GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 11:54:50 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-2F5Bh/C08HBa0064M21/C08HBa0064M21.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0064M21.1, from 1 to 93492, both strands analyzed. ... started at: Tue Jul 25 12:20:50 2006 EST library file: /tmp/cxgn-bacpublish-resources-nuBx0a/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 8 HitsTableSize = 79 EST library file: /tmp/cxgn-bacpublish-resources-nuBx0a/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 57 ******************************************************************************** EST sequence 61 +strand 596 n (File: SGN-E320441+) 1 CCAAAATGAA GAAGTTTGTT GTATGTTTTT TGGTGTTATT GGGTGTTGCT TCAGGTCATA 61 GTGGAGAGCA GCCTTTATCA AACATTGCAA TCCACAAAGC TACTGTTGCA CTTGATGCAT 121 CACTCACCAT TAAAGCTTAT CCATTTATTC TTGCTCGCAA GGGTGGTGAC ACTGAATGGG 181 TAACTCTACA TCTTGACAAC CCCAACCCAT CACATGATGA CTGGGTTGGA GTTTTCTCTC 241 CAGCAAAATT CAATGGATCT ACATGTTATT TGGAAAATGA TGGTAAACAA CAGCCTCCAT 301 ATATTTGTAC AGCCCCAATA AAGTATAACT TTGCAAATTT CTCCAATCCG GATTATGCAA 361 AAACGGGAAA CACTTCTCTC AAGTTCCAGT TAATCAATCA GCGGGCAGAT TTCTCCTTTG 421 CATTGCTTAC AGGCGGGCTG TCACATCCAA AGCTGGTAGG TGTTTCAAAT TACATATCAT 481 TTGCAAATCC TAAAGCACCA CTTTATCCAC GGCTTGCTTT GGGGGAAATC ATGGAATGAA 541 ATGACATTGA CCTGGACAAG CGGCTATAAT TTACTTGAAG CTGTTCCTTT CATTGA Predicted gene structure (within gDNA segment 1 to 1612): Exon 1 1 29 ( 29 n); cDNA 133 161 ( 29 n); score: 0.966 Intron 1 30 96 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 97 188 ( 92 n); cDNA 162 253 ( 92 n); score: 1.000 Intron 2 189 262 ( 74 n); Pd: 0.999 (s: 1.00), Pa: 0.863 (s: 1.00) Exon 3 263 332 ( 70 n); cDNA 254 323 ( 70 n); score: 1.000 Intron 3 333 410 ( 78 n); Pd: 0.880 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 4 411 533 ( 123 n); cDNA 324 446 ( 123 n); score: 0.976 Intron 4 534 707 ( 174 n); Pd: 0.949 (s: 0.94), Pa: 0.992 (s: 1.00) Exon 5 708 800 ( 93 n); cDNA 447 540 ( 94 n); score: 0.973 Intron 5 801 946 ( 146 n); Pd: 0.956 (s: 0.95), Pa: 0.851 (s: 1.00) Exon 6 947 1002 ( 56 n); cDNA 541 596 ( 56 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E320441+ 0.987 463 0.777 C PGS_C08HBa0064M21.1+_SGN-E320441+ (1 29,97 188,263 332,411 533,708 800,947 1002) Alignment (genomic DNA sequence = upper lines): AAGCTTATCC ATTTATTCTT GCTCCCAAGG TACTTGAATC CTTCTTGGCC TTTTTATTGA 60 |||||||||| |||||||||| |||| |||| AAGCTTATCC ATTTATTCTT GCTCGCAAG. .......... .......... .......... 161 AGCAATATCT TTAATTCACA TGACATGACA TGACAGGGTG GTGACACTGA ATGGGTAACT 120 |||| |||||||||| |||||||||| .......... .......... .......... ......GGTG GTGACACTGA ATGGGTAACT 185 CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 245 AAATTCAAGT ATGTACTAAT CTCTACTTCC TCGTTGTTGA ATAAATTTGG AATGTTTATT 240 |||||||| AAATTCAA.. .......... .......... .......... .......... .......... 253 TTGTACTCCT TTTGCATCTC AGTGGATCTA CATGTTATTT GGAAAATGAT GGTAAACAAC 300 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TGGATCTA CATGTTATTT GGAAAATGAT GGTAAACAAC 291 AGCCTCCATA TATTTGTACA GCCCCAATAA AGGCAGGTGA CTACAATTCA ACTATAATTA 360 |||||||||| |||||||||| |||||||||| || AGCCTCCATA TATTTGTACA GCCCCAATAA AG........ .......... .......... 323 GGAAAGGTGT TTGCAATTTC TAACCTAAAT AAATAATGTG TCTCTCGCAG TATAACTTTG 420 |||||||||| .......... .......... .......... .......... .......... TATAACTTTG 333 CAAATTTCTC CAATCCGGAT TATGCAAAAA CGGGAAACAC TTCTCTCAAG TTCCAGTTAA 480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTTCTC CAATCCGGAT TATGCAAAAA CGGGAAACAC TTCTCTCAAG TTCCAGTTAA 393 TCAATCAGCG GGCAGATTTC TCCTTTGCAT TGTTTACAGG CGGGTTGTCA AATGTCAGTT 540 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| || TCAATCAGCG GGCAGATTTC TCCTTTGCAT TGCTTACAGG CGGGCTGTCA CAT....... 446 ATATCTATGC TTAATCTTTT TCATTCTCCA CCCCAAATTT GTACTTGTAT TTGTTTTAAA 600 .......... .......... .......... .......... .......... .......... 446 GCAAATGCCT ACAAAAAATA AGACCTCCAT ACACCTTACC ATTCAAACTC CACCATTTGT 660 .......... .......... .......... .......... .......... .......... 446 TTGCTAGTCT TCGTCATGTT TCCTTAATAC CATTCTATTT GTTGCAGCCA AAGCTGGTAG 720 ||| |||||||||| .......... .......... .......... .......... .......CCA AAGCTGGTAG 459 GTGTTTCAAA TTACATATCA TTTGCAAATC CTAAAGCACC ACTTTATCCA CGGCTTGCTT 780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTCAAA TTACATATCA TTTGCAAATC CTAAAGCACC ACTTTATCCA CGGCTTGCTT 519 T-GGGGAAAT CATGGAATGA AGTAAGTTGG TGCTAGGCTA GCTAATCATC AGTTTTATTT 839 | |||||||| |||||||||| | TGGGGGAAAT CATGGAATGA A......... .......... .......... .......... 540 ATTTAGTCTA ATGTTAAGGA TGGCACTCTG TCCTCACTAG CTATGTCACC ATGAAGTAAA 899 .......... .......... .......... .......... .......... .......... 540 TCTTCAGTTT CTTTTAAGGT ACATTGATGA ATTTTCTCCT TCCATAGATG ACATTGACCT 959 ||| |||||||||| .......... .......... .......... .......... .......ATG ACATTGACCT 553 GGACAAGCGG CTATAATTTA CTTGAAGCTG TTCCTTTCAT TGA 1002 |||||||||| |||||||||| |||||||||| |||||||||| ||| GGACAAGCGG CTATAATTTA CTTGAAGCTG TTCCTTTCAT TGA 596 hqPGS_C08HBa0064M21.1+_SGN-E320441+ (1 29,97 188,263 332,411 533,708 800,947 1002) ******************************************************************************** EST sequence 8 +strand 746 n (File: SGN-E340270+) 1 TTTGTTGGAA TCAAAACGCA GAAGCACTAA GGCGGCAACT TTTGCCAAAA TGAAGAAGTT 61 TGTTGTATGT TTTTTGGTGT TATTGGGTGT TGCTTCAGGT CATAGTGGAG AGCAGCCTTT 121 ATCAAACATT GCAATCCACA AAGCTACTGT TGCACTTGAT GCATCACTCA CCATTAAAGC 181 TTATCCATTT ATTCTTGCTC CCAAGGTACT TGAATCCTTC TTGGCCTTTT TATTGAAGCA 241 ATATCTTTAA TTCACATGAC ATGACATGAC AGGGTGGTGA CACTGAATGG GTAACTCTAC 301 ATCTTGACAA CCCCAACCCA TCACATGATG ACTGGGTTGG AGTTTTCTCT CCAGCAAAAT 361 TCAAGTATGT ACTAATCTCT ACTTCCTCGT TGTTGAATAA ATTTGGAATG TTTATTTTGT 421 ACTCCTTTTG CATCTCAGTG GATCTACATG TTATTTGGAA AATGATGGTA AACAACAGCC 481 TCCATATATT TGTACAGCCC CAATAAAGTA TAACTTTGCA AATTTCTCCA ATCCGGATTA 541 TGCAAAAACG GGAAACACTT CTCTCAAGTT CCAGTTAATC AATCAGCGGG CAGATTTCTC 601 CTTTGCATTG TTTACGGCGG GTTGTCAAAT CCAAGCTGGT AGGTGTTTCA AATTACATAT 661 CATTTGCAAA TCCTAAAGCA CCACTTTATC CACGGCTTGC TTTGGGGAAA TCATGGAATG 721 AAATGACATT GACCTGGACA AGCGGC Predicted gene structure (within gDNA segment 1 to 1650): Exon 1 1 332 ( 332 n); cDNA 177 508 ( 332 n); score: 1.000 Intron 1 333 410 ( 78 n); Pd: 0.880 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 2 411 533 ( 123 n); cDNA 509 630 ( 122 n); score: 0.992 Intron 2 534 707 ( 174 n); Pd: 0.949 (s: 0.98), Pa: 0.992 (s: 0.98) Exon 3 708 800 ( 93 n); cDNA 631 722 ( 92 n); score: 0.989 Intron 3 801 946 ( 146 n); Pd: 0.956 (s: 1.00), Pa: 0.851 (s: 0) Exon 4 947 970 ( 24 n); cDNA 723 746 ( 24 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E340270+ 0.996 572 0.767 C PGS_C08HBa0064M21.1+_SGN-E340270+ (1 332,411 533,708 800,947 970) Alignment (genomic DNA sequence = upper lines): AAGCTTATCC ATTTATTCTT GCTCCCAAGG TACTTGAATC CTTCTTGGCC TTTTTATTGA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTATCC ATTTATTCTT GCTCCCAAGG TACTTGAATC CTTCTTGGCC TTTTTATTGA 236 AGCAATATCT TTAATTCACA TGACATGACA TGACAGGGTG GTGACACTGA ATGGGTAACT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATATCT TTAATTCACA TGACATGACA TGACAGGGTG GTGACACTGA ATGGGTAACT 296 CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 356 AAATTCAAGT ATGTACTAAT CTCTACTTCC TCGTTGTTGA ATAAATTTGG AATGTTTATT 240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCAAGT ATGTACTAAT CTCTACTTCC TCGTTGTTGA ATAAATTTGG AATGTTTATT 416 TTGTACTCCT TTTGCATCTC AGTGGATCTA CATGTTATTT GGAAAATGAT GGTAAACAAC 300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTACTCCT TTTGCATCTC AGTGGATCTA CATGTTATTT GGAAAATGAT GGTAAACAAC 476 AGCCTCCATA TATTTGTACA GCCCCAATAA AGGCAGGTGA CTACAATTCA ACTATAATTA 360 |||||||||| |||||||||| |||||||||| || AGCCTCCATA TATTTGTACA GCCCCAATAA AG........ .......... .......... 508 GGAAAGGTGT TTGCAATTTC TAACCTAAAT AAATAATGTG TCTCTCGCAG TATAACTTTG 420 |||||||||| .......... .......... .......... .......... .......... TATAACTTTG 518 CAAATTTCTC CAATCCGGAT TATGCAAAAA CGGGAAACAC TTCTCTCAAG TTCCAGTTAA 480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTTCTC CAATCCGGAT TATGCAAAAA CGGGAAACAC TTCTCTCAAG TTCCAGTTAA 578 TCAATCAGCG GGCAGATTTC TCCTTTGCAT TGTTTACAGG CGGGTTGTCA AATGTCAGTT 540 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||| TCAATCAGCG GGCAGATTTC TCCTTTGCAT TGTTTAC-GG CGGGTTGTCA AAT....... 630 ATATCTATGC TTAATCTTTT TCATTCTCCA CCCCAAATTT GTACTTGTAT TTGTTTTAAA 600 .......... .......... .......... .......... .......... .......... 630 GCAAATGCCT ACAAAAAATA AGACCTCCAT ACACCTTACC ATTCAAACTC CACCATTTGT 660 .......... .......... .......... .......... .......... .......... 630 TTGCTAGTCT TCGTCATGTT TCCTTAATAC CATTCTATTT GTTGCAGCCA AAGCTGGTAG 720 || |||||||||| .......... .......... .......... .......... .......CC- AAGCTGGTAG 642 GTGTTTCAAA TTACATATCA TTTGCAAATC CTAAAGCACC ACTTTATCCA CGGCTTGCTT 780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTCAAA TTACATATCA TTTGCAAATC CTAAAGCACC ACTTTATCCA CGGCTTGCTT 702 TGGGGAAATC ATGGAATGAA GTAAGTTGGT GCTAGGCTAG CTAATCATCA GTTTTATTTA 840 |||||||||| |||||||||| TGGGGAAATC ATGGAATGAA .......... .......... .......... .......... 722 TTTAGTCTAA TGTTAAGGAT GGCACTCTGT CCTCACTAGC TATGTCACCA TGAAGTAAAT 900 .......... .......... .......... .......... .......... .......... 722 CTTCAGTTTC TTTTAAGGTA CATTGATGAA TTTTCTCCTT CCATAGATGA CATTGACCTG 960 |||| |||||||||| .......... .......... .......... .......... ......ATGA CATTGACCTG 736 GACAAGCGGC 970 |||||||||| GACAAGCGGC 746 hqPGS_C08HBa0064M21.1+_SGN-E340270+ (1 332,411 533,708 800,947 970) ******************************************************************************** EST sequence 7 +strand 245 n (File: SGN-E268716+) 1 TTATCAAACA TTGCAATCCA CAAAGCTACT GTTGCACTTG ATGCATCACT CACCATTTAA 61 GCTTATCCAT TTATTCTTGC TCCCAAAGGT GGTGACACTG AATGGGTAAC TCTACATCTT 121 GACAACCCCA ACCCATCACA TGATGACTGG GTTGGAGTTT TCTCTCCAGC AAAATTCATT 181 GGATCTACAT GTTATTCTGG AAAATGATGG TAAACAACAG CCTCCATATA TTTGTACAGC 241 CCCAA Predicted gene structure (within gDNA segment 1 to 937): Exon 1 1 29 ( 29 n); cDNA 59 87 ( 29 n); score: 0.966 Intron 1 30 96 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 97 188 ( 92 n); cDNA 88 179 ( 92 n); score: 0.989 Intron 2 189 262 ( 74 n); Pd: 0.999 (s: 0.98), Pa: 0.863 (s: 0.95) Exon 3 263 327 ( 65 n); cDNA 180 245 ( 66 n); score: 0.962 MATCH C08HBa0064M21.1+ SGN-E268716+ 0.978 186 0.759 C PGS_C08HBa0064M21.1+_SGN-E268716+ (1 29,97 188,263 327) Alignment (genomic DNA sequence = upper lines): AAGCTTATCC ATTTATTCTT GCTCCCAAGG TACTTGAATC CTTCTTGGCC TTTTTATTGA 60 |||||||||| |||||||||| |||||||| AAGCTTATCC ATTTATTCTT GCTCCCAAA. .......... .......... .......... 87 AGCAATATCT TTAATTCACA TGACATGACA TGACAGGGTG GTGACACTGA ATGGGTAACT 120 |||| |||||||||| |||||||||| .......... .......... .......... ......GGTG GTGACACTGA ATGGGTAACT 111 CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATCTTG ACAACCCCAA CCCATCACAT GATGACTGGG TTGGAGTTTT CTCTCCAGCA 171 AAATTCAAGT ATGTACTAAT CTCTACTTCC TCGTTGTTGA ATAAATTTGG AATGTTTATT 240 ||||||| AAATTCAT.. .......... .......... .......... .......... .......... 179 TTGTACTCCT TTTGCATCTC AGTGGATCTA CATGTTATT- TGGAAAATGA TGGTAAACAA 299 |||||||| ||||||||| |||||||||| |||||||||| .......... .......... ..TGGATCTA CATGTTATTC TGGAAAATGA TGGTAAACAA 217 CAGCCTCCAT ATATTTGTAC AGCCCCAA 327 |||||||||| |||||||||| |||||||| CAGCCTCCAT ATATTTGTAC AGCCCCAA 245 hqPGS_C08HBa0064M21.1+_SGN-E268716+ (1 29,97 188,263 327) ******************************************************************************** EST sequence 70 +strand 616 n (File: SGN-E396727+) 1 TTATTTGGAA AATGATGGTA AACAACAGCC TCCATATATT TGTACAGCCC CAATAAAGTA 61 TAACTTTGCA AATTTCTCCA ATCCGGATTA TGCAAAAACG GGAAACACTT CTCTCAAGTT 121 CCAGTTAATC AATCAGCGGG CAGATTTCTC CTTTGCATTG TTTACAGGCG GGTTGTCAAA 181 TCCAAAGCTG GTAGGTGTTT CAAATTACAT ATCATTTGCA AATCCTAAAG CACCACTTTA 241 TCCACGGCTT GCTTTGGGGA AATCATGGAA TGAAATGACA TTGACCTGGA CAAGCGGCTA 301 TAATTTACTT GAAGCTGTTC CTTTCATTGA ATGGGGTCGG AAGGGTGATC CCCAACATCG 361 CTCACCAGCA GGAACATTGA CATTTGATAG AAATACAATG TGTGGTTCAC CTGCTCGAAC 421 AGTTGGCTGG CGTGATCCAG GGTTCATACA TACTAGCTTC ATGAAGGATC TTTGGCCAAG 481 CACCCTTGTA CACATACAAG ATGGGTCATA TGTTGTCAAA TGGTTCCTAC GTTTGGAGTT 541 AAGATGAATT CCTTTAGATC ATCACCCTAT TCCAGGACAA AACTTCATTT GCAACGTGTT 601 ATAATTTTTT GGAAAA Predicted gene structure (within gDNA segment 1 to 3132): Exon 1 275 332 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 333 410 ( 78 n); Pd: 0.880 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 2 411 533 ( 123 n); cDNA 59 181 ( 123 n); score: 1.000 Intron 2 534 707 ( 174 n); Pd: 0.949 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 708 800 ( 93 n); cDNA 182 274 ( 93 n); score: 1.000 Intron 3 801 946 ( 146 n); Pd: 0.956 (s: 1.00), Pa: 0.851 (s: 1.00) Exon 4 947 1076 ( 130 n); cDNA 275 404 ( 130 n); score: 1.000 Intron 4 1077 1764 ( 688 n); Pd: 0.755 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 5 1765 1846 ( 82 n); cDNA 405 487 ( 83 n); score: 0.970 Intron 5 1847 1944 ( 98 n); Pd: 0.961 (s: 0.95), Pa: 0.971 (s: 1.00) Exon 6 1945 2062 ( 118 n); cDNA 488 609 ( 122 n); score: 0.881 MATCH C08HBa0064M21.1+ SGN-E396727+ 0.973 604 0.981 C PGS_C08HBa0064M21.1+_SGN-E396727+ (275 332,411 533,708 800,947 1076,1765 1846,1945 2062) Alignment (genomic DNA sequence = upper lines): TTATTTGGAA AATGATGGTA AACAACAGCC TCCATATATT TGTACAGCCC CAATAAAGGC 334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTATTTGGAA AATGATGGTA AACAACAGCC TCCATATATT TGTACAGCCC CAATAAAG.. 58 AGGTGACTAC AATTCAACTA TAATTAGGAA AGGTGTTTGC AATTTCTAAC CTAAATAAAT 394 .......... .......... .......... .......... .......... .......... 58 AATGTGTCTC TCGCAGTATA ACTTTGCAAA TTTCTCCAAT CCGGATTATG CAAAAACGGG 454 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TATA ACTTTGCAAA TTTCTCCAAT CCGGATTATG CAAAAACGGG 102 AAACACTTCT CTCAAGTTCC AGTTAATCAA TCAGCGGGCA GATTTCTCCT TTGCATTGTT 514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTCT CTCAAGTTCC AGTTAATCAA TCAGCGGGCA GATTTCTCCT TTGCATTGTT 162 TACAGGCGGG TTGTCAAATG TCAGTTATAT CTATGCTTAA TCTTTTTCAT TCTCCACCCC 574 |||||||||| ||||||||| TACAGGCGGG TTGTCAAAT. .......... .......... .......... .......... 181 AAATTTGTAC TTGTATTTGT TTTAAAGCAA ATGCCTACAA AAAATAAGAC CTCCATACAC 634 .......... .......... .......... .......... .......... .......... 181 CTTACCATTC AAACTCCACC ATTTGTTTGC TAGTCTTCGT CATGTTTCCT TAATACCATT 694 .......... .......... .......... .......... .......... .......... 181 CTATTTGTTG CAGCCAAAGC TGGTAGGTGT TTCAAATTAC ATATCATTTG CAAATCCTAA 754 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...CCAAAGC TGGTAGGTGT TTCAAATTAC ATATCATTTG CAAATCCTAA 228 AGCACCACTT TATCCACGGC TTGCTTTGGG GAAATCATGG AATGAAGTAA GTTGGTGCTA 814 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGCACCACTT TATCCACGGC TTGCTTTGGG GAAATCATGG AATGAA.... .......... 274 GGCTAGCTAA TCATCAGTTT TATTTATTTA GTCTAATGTT AAGGATGGCA CTCTGTCCTC 874 .......... .......... .......... .......... .......... .......... 274 ACTAGCTATG TCACCATGAA GTAAATCTTC AGTTTCTTTT AAGGTACATT GATGAATTTT 934 .......... .......... .......... .......... .......... .......... 274 CTCCTTCCAT AGATGACATT GACCTGGACA AGCGGCTATA ATTTACTTGA AGCTGTTCCT 994 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ATGACATT GACCTGGACA AGCGGCTATA ATTTACTTGA AGCTGTTCCT 322 TTCATTGAAT GGGGTCGGAA GGGTGATCCC CAACATCGCT CACCAGCAGG AACATTGACA 1054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTGAAT GGGGTCGGAA GGGTGATCCC CAACATCGCT CACCAGCAGG AACATTGACA 382 TTTGATAGAA ATACAATGTG TGGTATGTTA CAATTTTTTA GTTTGAAGTT ATTTTTCAAA 1114 |||||||||| |||||||||| || TTTGATAGAA ATACAATGTG TG........ .......... .......... .......... 404 TTTAGAAAGT GGGGGAAAAA CAGTAAGTAT CATATCTACA AATTATTAGT TATGGAAGAC 1174 .......... .......... .......... .......... .......... .......... 404 GACTCATACT TAATTAGCTT TAGCATCAGG TGCTTCCCTG TTCTGTAATA ATCATTTGCA 1234 .......... .......... .......... .......... .......... .......... 404 AAAGCTCTCA AGTTAGATAA AGAGATTCTT CTATTTGCTA CCTGCAGCTT CAGCCTGTTT 1294 .......... .......... .......... .......... .......... .......... 404 TAAACATATT TAAGCATACA CAAAAGACTA CACTCCCTTT TAAAAGTATA TTACACACTA 1354 .......... .......... .......... .......... .......... .......... 404 TTTGGAGTTC AAGTTTTATC ATTTGTGCAT ATGCATAAAA AACTACAGTC CTTTTTCAAG 1414 .......... .......... .......... .......... .......... .......... 404 TGAACTGCAC ACTATTTGGG AGTTCGAGTT TTGTCATTTG TGGATATGCA TTTCCAATTT 1474 .......... .......... .......... .......... .......... .......... 404 CTAACACTAG AACTAGCATA GAACGCTGTC CCATATTCCT CTTACTGACT GATGCTGCAT 1534 .......... .......... .......... .......... .......... .......... 404 GTGGTTATGG TCTCTATATA AGACAGCCTA TTGGTGTCTA GTCCATCTTC TGTAAAGGAT 1594 .......... .......... .......... .......... .......... .......... 404 GTCTACAAAG GTTCTCAGTG AATGTTAAGA CATCAGAATT TCAATAAAAC TTTCAAGGGT 1654 .......... .......... .......... .......... .......... .......... 404 TAGAAATCAT GATATTTAAC CAACTGCTCT TTCATTATAT CTCGCGCCAT CATTTGCGAG 1714 .......... .......... .......... .......... .......... .......... 404 CCAATGAGAT ATATCAACAT GAAGTAATGC TTCTCTAATG TATGCTTCAG GTTCACCTGC 1774 |||||||||| .......... .......... .......... .......... .......... GTTCACCTGC 414 TCGAACAGTT GGCTGGCGTG ATCCAGGGTT CATACATACT AGCTTCATGA AGGATCTTTG 1834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAACAGTT GGCTGGCGTG ATCCAGGGTT CATACATACT AGCTTCATGA AGGATCTTTG 474 GCCAAGCA-C CTTGTAAGTT TGTTCTCCAA ATTGTATTGC GTCAGGGATA AAACTTTTAC 1893 |||||||| | ||| GCCAAGCACC CTT....... .......... .......... .......... .......... 487 TTGATATCAG TTCATGTATA ATTGTGTTCG ATGAAATGGT AAATACATCA GGTACACATA 1953 ||||||||| .......... .......... .......... .......... .......... .GTACACATA 496 CAAGATGGGT CATATGTTGT CAAATGGTTC CTACGTTTGG AG-TAAGATG TATTCCTTTA 2012 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ||||||||| CAAGATGGGT CATATGTTGT CAAATGGTTC CTACGTTTGG AGTTAAGATG AATTCCTTTA 556 GATCATCACC ATA-TCCAGG ACAAGAC-TC A-TTGCAGCG TGTTATAATT TTT 2062 |||||||||| || |||||| |||| || || | ||||| || |||||||||| ||| GATCATCACC CTATTCCAGG ACAAAACTTC ATTTGCAACG TGTTATAATT TTT 609 hqPGS_C08HBa0064M21.1+_SGN-E396727+ (275 332,411 533,708 800,947 1076,1765 1846,1945 2062) ******************************************************************************** EST sequence 59 +strand 453 n (File: SGN-E206957+) 1 TATTTGGAAA ATGATGGTAA ACAACAGCCT CCATATATTT GTACAGCCCC AATAAAGTAT 61 AACTTTGCAA ATTTCTCCAA TCCGGATTAT GCAAAAACGG GAAACACTTC TCTCAAGTTC 121 CAGTTAATCA ATCAGCGGGC AGATTTCTCC TTTGCATTGT TTACAGGCGG GTTGTCAAAT 181 CCAAAGCTGG TAGGTGTTTC AAATTACATA TCATTTGCAA ATCCTAAAGC ACCACTTTAT 241 CCACGGCTTG CTTTGGGGAA ATCATGGAAT GAAATGACAT TGACCTGGAC AAGCGGCTAT 301 AATTTACTTG AAGCTGTTCC TTTCATTGAA TGGGGTCGGA AGGGTGATCC CCAACATCGC 361 TCACCAGCAG GAACATTGAC ATTTGATAGA AATACAATGT GTGGTTCACC TGCTCGAACA 421 GTTGGCTGGC GTGATCCAGG GTTCATACAT ACT Predicted gene structure (within gDNA segment 1 to 2424): Exon 1 276 332 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 333 410 ( 78 n); Pd: 0.880 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 2 411 533 ( 123 n); cDNA 58 180 ( 123 n); score: 1.000 Intron 2 534 707 ( 174 n); Pd: 0.949 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 708 800 ( 93 n); cDNA 181 273 ( 93 n); score: 1.000 Intron 3 801 946 ( 146 n); Pd: 0.956 (s: 1.00), Pa: 0.851 (s: 1.00) Exon 4 947 1076 ( 130 n); cDNA 274 403 ( 130 n); score: 1.000 Intron 4 1077 1764 ( 688 n); Pd: 0.755 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 5 1765 1814 ( 50 n); cDNA 404 453 ( 50 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E206957+ 1.000 453 1.000 C PGS_C08HBa0064M21.1+_SGN-E206957+ (276 332,411 533,708 800,947 1076,1765 1814) Alignment (genomic DNA sequence = upper lines): TATTTGGAAA ATGATGGTAA ACAACAGCCT CCATATATTT GTACAGCCCC AATAAAGGCA 335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATTTGGAAA ATGATGGTAA ACAACAGCCT CCATATATTT GTACAGCCCC AATAAAG... 57 GGTGACTACA ATTCAACTAT AATTAGGAAA GGTGTTTGCA ATTTCTAACC TAAATAAATA 395 .......... .......... .......... .......... .......... .......... 57 ATGTGTCTCT CGCAGTATAA CTTTGCAAAT TTCTCCAATC CGGATTATGC AAAAACGGGA 455 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TATAA CTTTGCAAAT TTCTCCAATC CGGATTATGC AAAAACGGGA 102 AACACTTCTC TCAAGTTCCA GTTAATCAAT CAGCGGGCAG ATTTCTCCTT TGCATTGTTT 515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACTTCTC TCAAGTTCCA GTTAATCAAT CAGCGGGCAG ATTTCTCCTT TGCATTGTTT 162 ACAGGCGGGT TGTCAAATGT CAGTTATATC TATGCTTAAT CTTTTTCATT CTCCACCCCA 575 |||||||||| |||||||| ACAGGCGGGT TGTCAAAT.. .......... .......... .......... .......... 180 AATTTGTACT TGTATTTGTT TTAAAGCAAA TGCCTACAAA AAATAAGACC TCCATACACC 635 .......... .......... .......... .......... .......... .......... 180 TTACCATTCA AACTCCACCA TTTGTTTGCT AGTCTTCGTC ATGTTTCCTT AATACCATTC 695 .......... .......... .......... .......... .......... .......... 180 TATTTGTTGC AGCCAAAGCT GGTAGGTGTT TCAAATTACA TATCATTTGC AAATCCTAAA 755 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CCAAAGCT GGTAGGTGTT TCAAATTACA TATCATTTGC AAATCCTAAA 228 GCACCACTTT ATCCACGGCT TGCTTTGGGG AAATCATGGA ATGAAGTAAG TTGGTGCTAG 815 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCACCACTTT ATCCACGGCT TGCTTTGGGG AAATCATGGA ATGAA..... .......... 273 GCTAGCTAAT CATCAGTTTT ATTTATTTAG TCTAATGTTA AGGATGGCAC TCTGTCCTCA 875 .......... .......... .......... .......... .......... .......... 273 CTAGCTATGT CACCATGAAG TAAATCTTCA GTTTCTTTTA AGGTACATTG ATGAATTTTC 935 .......... .......... .......... .......... .......... .......... 273 TCCTTCCATA GATGACATTG ACCTGGACAA GCGGCTATAA TTTACTTGAA GCTGTTCCTT 995 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .ATGACATTG ACCTGGACAA GCGGCTATAA TTTACTTGAA GCTGTTCCTT 322 TCATTGAATG GGGTCGGAAG GGTGATCCCC AACATCGCTC ACCAGCAGGA ACATTGACAT 1055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTGAATG GGGTCGGAAG GGTGATCCCC AACATCGCTC ACCAGCAGGA ACATTGACAT 382 TTGATAGAAA TACAATGTGT GGTATGTTAC AATTTTTTAG TTTGAAGTTA TTTTTCAAAT 1115 |||||||||| |||||||||| | TTGATAGAAA TACAATGTGT G......... .......... .......... .......... 403 TTAGAAAGTG GGGGAAAAAC AGTAAGTATC ATATCTACAA ATTATTAGTT ATGGAAGACG 1175 .......... .......... .......... .......... .......... .......... 403 ACTCATACTT AATTAGCTTT AGCATCAGGT GCTTCCCTGT TCTGTAATAA TCATTTGCAA 1235 .......... .......... .......... .......... .......... .......... 403 AAGCTCTCAA GTTAGATAAA GAGATTCTTC TATTTGCTAC CTGCAGCTTC AGCCTGTTTT 1295 .......... .......... .......... .......... .......... .......... 403 AAACATATTT AAGCATACAC AAAAGACTAC ACTCCCTTTT AAAAGTATAT TACACACTAT 1355 .......... .......... .......... .......... .......... .......... 403 TTGGAGTTCA AGTTTTATCA TTTGTGCATA TGCATAAAAA ACTACAGTCC TTTTTCAAGT 1415 .......... .......... .......... .......... .......... .......... 403 GAACTGCACA CTATTTGGGA GTTCGAGTTT TGTCATTTGT GGATATGCAT TTCCAATTTC 1475 .......... .......... .......... .......... .......... .......... 403 TAACACTAGA ACTAGCATAG AACGCTGTCC CATATTCCTC TTACTGACTG ATGCTGCATG 1535 .......... .......... .......... .......... .......... .......... 403 TGGTTATGGT CTCTATATAA GACAGCCTAT TGGTGTCTAG TCCATCTTCT GTAAAGGATG 1595 .......... .......... .......... .......... .......... .......... 403 TCTACAAAGG TTCTCAGTGA ATGTTAAGAC ATCAGAATTT CAATAAAACT TTCAAGGGTT 1655 .......... .......... .......... .......... .......... .......... 403 AGAAATCATG ATATTTAACC AACTGCTCTT TCATTATATC TCGCGCCATC ATTTGCGAGC 1715 .......... .......... .......... .......... .......... .......... 403 CAATGAGATA TATCAACATG AAGTAATGCT TCTCTAATGT ATGCTTCAGG TTCACCTGCT 1775 | |||||||||| .......... .......... .......... .......... .........G TTCACCTGCT 414 CGAACAGTTG GCTGGCGTGA TCCAGGGTTC ATACATACT 1814 |||||||||| |||||||||| |||||||||| ||||||||| CGAACAGTTG GCTGGCGTGA TCCAGGGTTC ATACATACT 453 hqPGS_C08HBa0064M21.1+_SGN-E206957+ (276 332,411 533,708 800,947 1076,1765 1814) ******************************************************************************** EST sequence 13 +strand 532 n (File: SGN-E252913+) 1 TTACTTGAAG CTGTTCCTTT CATTGAATGG GGTCGGAAGG GTGATCCCCA ACATGGCTCA 61 CCAGCAGGAA CATTGACATT TGATAGAAAT ACAATGTGTG GTTCACCTGC TCGAACAGTT 121 GGCTGGCGTG ATCCAGGGTT CATACATACT AGCTTCATGA AGGATCTTTG GCCAAGCACC 181 TTGTACACAT ACAAGATGGG TCATATGTTG TCAAATGGTT CCTACGTTTG GAGTAAGATG 241 TATTCCTTTA GATCATCACC ATATCCAGGA CAAGACTCAT TGCAGCGTGT TATAATTTTT 301 GGAGACATGG GAAAGGCTGA GCGGGATGGT TCAAATGAGT ATAGTAATTA TCAGCCAGGC 361 TCACTGAATA CAACGGACCA ACTCATCAAT GACCTTAAAA ACATTGATAT AGTTTTCCAT 421 ATAGGAGACA TTACCTATGC CAATGGATAC ATATCACAGT GGGACCAATT TACTGCACAA 481 GTGGAACCTG TTGCATCAAC AGTACCCTAT ATGATTGCAA GTGGTAATCA TG Predicted gene structure (within gDNA segment 377 to 4037): Exon 1 977 1076 ( 100 n); cDNA 1 100 ( 100 n); score: 0.990 Intron 1 1077 1764 ( 688 n); Pd: 0.755 (s: 0.98), Pa: 0.985 (s: 1.00) Exon 2 1765 1846 ( 82 n); cDNA 101 182 ( 82 n); score: 1.000 Intron 2 1847 1944 ( 98 n); Pd: 0.961 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 1945 2077 ( 133 n); cDNA 183 315 ( 133 n); score: 1.000 Intron 3 2078 3111 (1034 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 4 3112 3317 ( 206 n); cDNA 316 521 ( 206 n); score: 1.000 Intron 4 3318 3417 ( 100 n); Pd: 0.945 (s: 1.00), Pa: 1.000 (s: 0) Exon 5 3418 3428 ( 11 n); cDNA 522 532 ( 11 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E252913+ 0.998 532 1.000 C PGS_C08HBa0064M21.1+_SGN-E252913+ (977 1076,1765 1846,1945 2077,3112 3317,3418 3428) Alignment (genomic DNA sequence = upper lines): TTACTTGAAG CTGTTCCTTT CATTGAATGG GGTCGGAAGG GTGATCCCCA ACATCGCTCA 1036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TTACTTGAAG CTGTTCCTTT CATTGAATGG GGTCGGAAGG GTGATCCCCA ACATGGCTCA 60 CCAGCAGGAA CATTGACATT TGATAGAAAT ACAATGTGTG GTATGTTACA ATTTTTTAGT 1096 |||||||||| |||||||||| |||||||||| |||||||||| CCAGCAGGAA CATTGACATT TGATAGAAAT ACAATGTGTG .......... .......... 100 TTGAAGTTAT TTTTCAAATT TAGAAAGTGG GGGAAAAACA GTAAGTATCA TATCTACAAA 1156 .......... .......... .......... .......... .......... .......... 100 TTATTAGTTA TGGAAGACGA CTCATACTTA ATTAGCTTTA GCATCAGGTG CTTCCCTGTT 1216 .......... .......... .......... .......... .......... .......... 100 CTGTAATAAT CATTTGCAAA AGCTCTCAAG TTAGATAAAG AGATTCTTCT ATTTGCTACC 1276 .......... .......... .......... .......... .......... .......... 100 TGCAGCTTCA GCCTGTTTTA AACATATTTA AGCATACACA AAAGACTACA CTCCCTTTTA 1336 .......... .......... .......... .......... .......... .......... 100 AAAGTATATT ACACACTATT TGGAGTTCAA GTTTTATCAT TTGTGCATAT GCATAAAAAA 1396 .......... .......... .......... .......... .......... .......... 100 CTACAGTCCT TTTTCAAGTG AACTGCACAC TATTTGGGAG TTCGAGTTTT GTCATTTGTG 1456 .......... .......... .......... .......... .......... .......... 100 GATATGCATT TCCAATTTCT AACACTAGAA CTAGCATAGA ACGCTGTCCC ATATTCCTCT 1516 .......... .......... .......... .......... .......... .......... 100 TACTGACTGA TGCTGCATGT GGTTATGGTC TCTATATAAG ACAGCCTATT GGTGTCTAGT 1576 .......... .......... .......... .......... .......... .......... 100 CCATCTTCTG TAAAGGATGT CTACAAAGGT TCTCAGTGAA TGTTAAGACA TCAGAATTTC 1636 .......... .......... .......... .......... .......... .......... 100 AATAAAACTT TCAAGGGTTA GAAATCATGA TATTTAACCA ACTGCTCTTT CATTATATCT 1696 .......... .......... .......... .......... .......... .......... 100 CGCGCCATCA TTTGCGAGCC AATGAGATAT ATCAACATGA AGTAATGCTT CTCTAATGTA 1756 .......... .......... .......... .......... .......... .......... 100 TGCTTCAGGT TCACCTGCTC GAACAGTTGG CTGGCGTGAT CCAGGGTTCA TACATACTAG 1816 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TCACCTGCTC GAACAGTTGG CTGGCGTGAT CCAGGGTTCA TACATACTAG 152 CTTCATGAAG GATCTTTGGC CAAGCACCTT GTAAGTTTGT TCTCCAAATT GTATTGCGTC 1876 |||||||||| |||||||||| |||||||||| CTTCATGAAG GATCTTTGGC CAAGCACCTT .......... .......... .......... 182 AGGGATAAAA CTTTTACTTG ATATCAGTTC ATGTATAATT GTGTTCGATG AAATGGTAAA 1936 .......... .......... .......... .......... .......... .......... 182 TACATCAGGT ACACATACAA GATGGGTCAT ATGTTGTCAA ATGGTTCCTA CGTTTGGAGT 1996 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT ACACATACAA GATGGGTCAT ATGTTGTCAA ATGGTTCCTA CGTTTGGAGT 234 AAGATGTATT CCTTTAGATC ATCACCATAT CCAGGACAAG ACTCATTGCA GCGTGTTATA 2056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGTATT CCTTTAGATC ATCACCATAT CCAGGACAAG ACTCATTGCA GCGTGTTATA 294 ATTTTTGGAG ACATGGGAAA GGTAACTTCA GTTGCCAATT ACTGATGGTC TGATAATCCA 2116 |||||||||| |||||||||| | ATTTTTGGAG ACATGGGAAA G......... .......... .......... .......... 315 TTTCTCTGCT CTTTCTGGAT ATAGTATCAA AACTAACAGC ATGTTTTCTT GTAAAAATGA 2176 .......... .......... .......... .......... .......... .......... 315 ATTTATAATA GTAAGTATAT CACGCTTGAT GTCCCGGGAG TGTCATTTAA ATTGTTATAT 2236 .......... .......... .......... .......... .......... .......... 315 TGGGAGGACT AATCTAATAT TCATTCAACT ATCATTCTTC CTACTCTGGA TATGAAAATT 2296 .......... .......... .......... .......... .......... .......... 315 CAGCTCATTA CATTCTCGTA TTAGTGAAGG TCCGACTTTT GGTCCTAAAC AGCTTGATTC 2356 .......... .......... .......... .......... .......... .......... 315 CACAGATTAA TGTGAAAGAA TGTTTTCTAG TTTAAAAAAA TGTTTTGTAG GCATAGATTT 2416 .......... .......... .......... .......... .......... .......... 315 TAAGCATCGT TTCAGTAGTA ACTCTTATAC CAGGTTCGTA CAAATTTCTC TGCAGCGCTT 2476 .......... .......... .......... .......... .......... .......... 315 CACTAAGTGC ATTGTAATTC AAGTTTAAGA TGTATGTGAG TAGTTTTTCG AGCCAACAAA 2536 .......... .......... .......... .......... .......... .......... 315 CTGTTCATTT ACTACTGCAT ATTTGAACAA CAGTCTCTTC ATTTACAATC ATATTTCCTT 2596 .......... .......... .......... .......... .......... .......... 315 TGGAATGTGT TTGATCGGAT AAACTACCAA CTCTATGCTT GTGTTACCAC TGATCCTATA 2656 .......... .......... .......... .......... .......... .......... 315 AAAATGTATA GCCACTTCAT GTGGCATCAG TCATTTACTT TTGAATAGAA ATTAAGTGCT 2716 .......... .......... .......... .......... .......... .......... 315 ACACTATATA TTGATGGCCA AAGACTAAGC TTGGTTTTTC TCCTTTGTTG AGCATTTAAC 2776 .......... .......... .......... .......... .......... .......... 315 GCCAATTGGA AATTCGCTTG TAGGATTTAC CTCTCACTGA CATAAGCTGA ATGTTGTGGT 2836 .......... .......... .......... .......... .......... .......... 315 AATCTTTTAT GTTCCCCTAT GCTGAGTCTC TGTCTGTTCT ACAATAACTC TGTGCATTTT 2896 .......... .......... .......... .......... .......... .......... 315 ACAAAAGCAT CACCAACCAT TTACCAACTT GAAGAAGTGT GCTTCATTGA ATAGTCTGGT 2956 .......... .......... .......... .......... .......... .......... 315 GAATATCAGA AGACCCTTTT GGTGTATTAT TCTTGTAGTT GTTTGTTTGA GCAGAAGACC 3016 .......... .......... .......... .......... .......... .......... 315 TGGATTCACA GAGTATTGTG TTTTTGTCCT GTTCCTCACC TCACTCTTTT TGTCAATACG 3076 .......... .......... .......... .......... .......... .......... 315 TAAATCACTA GACTAAACTG CATAGTGATT TTCAGGCTGA GCGGGATGGT TCAAATGAGT 3136 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCTGA GCGGGATGGT TCAAATGAGT 340 ATAGTAATTA TCAGCCAGGC TCACTGAATA CAACGGACCA ACTCATCAAT GACCTTAAAA 3196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTAATTA TCAGCCAGGC TCACTGAATA CAACGGACCA ACTCATCAAT GACCTTAAAA 400 ACATTGATAT AGTTTTCCAT ATAGGAGACA TTACCTATGC CAATGGATAC ATATCACAGT 3256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGATAT AGTTTTCCAT ATAGGAGACA TTACCTATGC CAATGGATAC ATATCACAGT 460 GGGACCAATT TACTGCACAA GTGGAACCTG TTGCATCAAC AGTACCCTAT ATGATTGCAA 3316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGACCAATT TACTGCACAA GTGGAACCTG TTGCATCAAC AGTACCCTAT ATGATTGCAA 520 GGTTCGCGCC CTTAACAATA TTTTCTGTGA TTAAGCTTCA ATCTTGGCTT TCTCTGTTTA 3376 | G......... .......... .......... .......... .......... .......... 521 TTCTTATATG ATATATATAT ATATATATGA TCTTCGTGCA GTGGTAATCA TG 3428 ||||||||| || .......... .......... .......... .......... .TGGTAATCA TG 532 hqPGS_C08HBa0064M21.1+_SGN-E252913+ (977 1076,1765 1846,1945 2077,3112 3317,3418 3428) ******************************************************************************** EST sequence 23 +strand 538 n (File: SGN-E264116+) 1 TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTGG 61 TTCACCTGCT CGAACAGTTG GCTGGCGTGA TCCAGGGTTC ATACATACTA GCTTCATGAA 121 GGATCTTTGG CCAAGCACCT TGTACACATA CAAGATGGGT CATATGTTGT CAAATGGTTC 181 CTACGTTTGG AGTAAGATGT ATTCCTTTAG ATCATCACCA TATCCAGGAC AAGACTCATT 241 GCAGCGTGTT ATAATTTTTG GAGACATGGG AAAGGCTGAG CGGGATGGTT CAAATGAGTA 301 TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA CTCATCAATG ACCTTAAAAA 361 CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC AATGGATACA TATCACAGTG 421 GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA GTACCCTATA TGATTGCAAG 481 TGGTAATCAT GAGCGTGATT GGCCTGGAAC TGGTTCCTTC TATGATGTTA TGGACTCT Predicted gene structure (within gDNA segment 418 to 4085): Exon 1 1018 1076 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 1077 1764 ( 688 n); Pd: 0.755 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 1765 1846 ( 82 n); cDNA 60 141 ( 82 n); score: 1.000 Intron 2 1847 1944 ( 98 n); Pd: 0.961 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 1945 2077 ( 133 n); cDNA 142 274 ( 133 n); score: 1.000 Intron 3 2078 3111 (1034 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 4 3112 3317 ( 206 n); cDNA 275 480 ( 206 n); score: 1.000 Intron 4 3318 3417 ( 100 n); Pd: 0.945 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 3418 3475 ( 58 n); cDNA 481 538 ( 58 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E264116+ 1.000 538 1.000 C PGS_C08HBa0064M21.1+_SGN-E264116+ (1018 1076,1765 1846,1945 2077,3112 3317,3418 3475) Alignment (genomic DNA sequence = upper lines): TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTGG 1077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTG. 59 TATGTTACAA TTTTTTAGTT TGAAGTTATT TTTCAAATTT AGAAAGTGGG GGAAAAACAG 1137 .......... .......... .......... .......... .......... .......... 59 TAAGTATCAT ATCTACAAAT TATTAGTTAT GGAAGACGAC TCATACTTAA TTAGCTTTAG 1197 .......... .......... .......... .......... .......... .......... 59 CATCAGGTGC TTCCCTGTTC TGTAATAATC ATTTGCAAAA GCTCTCAAGT TAGATAAAGA 1257 .......... .......... .......... .......... .......... .......... 59 GATTCTTCTA TTTGCTACCT GCAGCTTCAG CCTGTTTTAA ACATATTTAA GCATACACAA 1317 .......... .......... .......... .......... .......... .......... 59 AAGACTACAC TCCCTTTTAA AAGTATATTA CACACTATTT GGAGTTCAAG TTTTATCATT 1377 .......... .......... .......... .......... .......... .......... 59 TGTGCATATG CATAAAAAAC TACAGTCCTT TTTCAAGTGA ACTGCACACT ATTTGGGAGT 1437 .......... .......... .......... .......... .......... .......... 59 TCGAGTTTTG TCATTTGTGG ATATGCATTT CCAATTTCTA ACACTAGAAC TAGCATAGAA 1497 .......... .......... .......... .......... .......... .......... 59 CGCTGTCCCA TATTCCTCTT ACTGACTGAT GCTGCATGTG GTTATGGTCT CTATATAAGA 1557 .......... .......... .......... .......... .......... .......... 59 CAGCCTATTG GTGTCTAGTC CATCTTCTGT AAAGGATGTC TACAAAGGTT CTCAGTGAAT 1617 .......... .......... .......... .......... .......... .......... 59 GTTAAGACAT CAGAATTTCA ATAAAACTTT CAAGGGTTAG AAATCATGAT ATTTAACCAA 1677 .......... .......... .......... .......... .......... .......... 59 CTGCTCTTTC ATTATATCTC GCGCCATCAT TTGCGAGCCA ATGAGATATA TCAACATGAA 1737 .......... .......... .......... .......... .......... .......... 59 GTAATGCTTC TCTAATGTAT GCTTCAGGTT CACCTGCTCG AACAGTTGGC TGGCGTGATC 1797 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT CACCTGCTCG AACAGTTGGC TGGCGTGATC 92 CAGGGTTCAT ACATACTAGC TTCATGAAGG ATCTTTGGCC AAGCACCTTG TAAGTTTGTT 1857 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAGGGTTCAT ACATACTAGC TTCATGAAGG ATCTTTGGCC AAGCACCTT. .......... 141 CTCCAAATTG TATTGCGTCA GGGATAAAAC TTTTACTTGA TATCAGTTCA TGTATAATTG 1917 .......... .......... .......... .......... .......... .......... 141 TGTTCGATGA AATGGTAAAT ACATCAGGTA CACATACAAG ATGGGTCATA TGTTGTCAAA 1977 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTA CACATACAAG ATGGGTCATA TGTTGTCAAA 174 TGGTTCCTAC GTTTGGAGTA AGATGTATTC CTTTAGATCA TCACCATATC CAGGACAAGA 2037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCCTAC GTTTGGAGTA AGATGTATTC CTTTAGATCA TCACCATATC CAGGACAAGA 234 CTCATTGCAG CGTGTTATAA TTTTTGGAGA CATGGGAAAG GTAACTTCAG TTGCCAATTA 2097 |||||||||| |||||||||| |||||||||| |||||||||| CTCATTGCAG CGTGTTATAA TTTTTGGAGA CATGGGAAAG .......... .......... 274 CTGATGGTCT GATAATCCAT TTCTCTGCTC TTTCTGGATA TAGTATCAAA ACTAACAGCA 2157 .......... .......... .......... .......... .......... .......... 274 TGTTTTCTTG TAAAAATGAA TTTATAATAG TAAGTATATC ACGCTTGATG TCCCGGGAGT 2217 .......... .......... .......... .......... .......... .......... 274 GTCATTTAAA TTGTTATATT GGGAGGACTA ATCTAATATT CATTCAACTA TCATTCTTCC 2277 .......... .......... .......... .......... .......... .......... 274 TACTCTGGAT ATGAAAATTC AGCTCATTAC ATTCTCGTAT TAGTGAAGGT CCGACTTTTG 2337 .......... .......... .......... .......... .......... .......... 274 GTCCTAAACA GCTTGATTCC ACAGATTAAT GTGAAAGAAT GTTTTCTAGT TTAAAAAAAT 2397 .......... .......... .......... .......... .......... .......... 274 GTTTTGTAGG CATAGATTTT AAGCATCGTT TCAGTAGTAA CTCTTATACC AGGTTCGTAC 2457 .......... .......... .......... .......... .......... .......... 274 AAATTTCTCT GCAGCGCTTC ACTAAGTGCA TTGTAATTCA AGTTTAAGAT GTATGTGAGT 2517 .......... .......... .......... .......... .......... .......... 274 AGTTTTTCGA GCCAACAAAC TGTTCATTTA CTACTGCATA TTTGAACAAC AGTCTCTTCA 2577 .......... .......... .......... .......... .......... .......... 274 TTTACAATCA TATTTCCTTT GGAATGTGTT TGATCGGATA AACTACCAAC TCTATGCTTG 2637 .......... .......... .......... .......... .......... .......... 274 TGTTACCACT GATCCTATAA AAATGTATAG CCACTTCATG TGGCATCAGT CATTTACTTT 2697 .......... .......... .......... .......... .......... .......... 274 TGAATAGAAA TTAAGTGCTA CACTATATAT TGATGGCCAA AGACTAAGCT TGGTTTTTCT 2757 .......... .......... .......... .......... .......... .......... 274 CCTTTGTTGA GCATTTAACG CCAATTGGAA ATTCGCTTGT AGGATTTACC TCTCACTGAC 2817 .......... .......... .......... .......... .......... .......... 274 ATAAGCTGAA TGTTGTGGTA ATCTTTTATG TTCCCCTATG CTGAGTCTCT GTCTGTTCTA 2877 .......... .......... .......... .......... .......... .......... 274 CAATAACTCT GTGCATTTTA CAAAAGCATC ACCAACCATT TACCAACTTG AAGAAGTGTG 2937 .......... .......... .......... .......... .......... .......... 274 CTTCATTGAA TAGTCTGGTG AATATCAGAA GACCCTTTTG GTGTATTATT CTTGTAGTTG 2997 .......... .......... .......... .......... .......... .......... 274 TTTGTTTGAG CAGAAGACCT GGATTCACAG AGTATTGTGT TTTTGTCCTG TTCCTCACCT 3057 .......... .......... .......... .......... .......... .......... 274 CACTCTTTTT GTCAATACGT AAATCACTAG ACTAAACTGC ATAGTGATTT TCAGGCTGAG 3117 |||||| .......... .......... .......... .......... .......... ....GCTGAG 280 CGGGATGGTT CAAATGAGTA TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA 3177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGATGGTT CAAATGAGTA TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA 340 CTCATCAATG ACCTTAAAAA CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCAATG ACCTTAAAAA CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC 400 AATGGATACA TATCACAGTG GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGATACA TATCACAGTG GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA 460 GTACCCTATA TGATTGCAAG GTTCGCGCCC TTAACAATAT TTTCTGTGAT TAAGCTTCAA 3357 |||||||||| |||||||||| GTACCCTATA TGATTGCAAG .......... .......... .......... .......... 480 TCTTGGCTTT CTCTGTTTAT TCTTATATGA TATATATATA TATATATGAT CTTCGTGCAG 3417 .......... .......... .......... .......... .......... .......... 480 TGGTAATCAT GAGCGTGATT GGCCTGGAAC TGGTTCCTTC TATGATGTTA TGGACTCT 3475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGGTAATCAT GAGCGTGATT GGCCTGGAAC TGGTTCCTTC TATGATGTTA TGGACTCT 538 hqPGS_C08HBa0064M21.1+_SGN-E264116+ (1018 1076,1765 1846,1945 2077,3112 3317,3418 3475) ******************************************************************************** EST sequence 20 +strand 477 n (File: SGN-E263954+) 1 TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTGG 61 TTCACCTGCT CGAACAGTTG GCTGGCGTGA TCCAGGGTTC ATACATACTA GCTTCATGAA 121 GGATCTTTGG CCAAGCACCT TGTACACATA CAAGATGGGT CATATGTTGT CAAATGGTTC 181 CTACGTTTGG AGTAAGATGT ATTCCTTTAG ATCATCACCA TATCCAGGAC AAGACTCATT 241 GCAGCGTGTT ATAATTTTTG GAGACATGGG AAAGGCTGAG CGGGATGGTT CAAATGAGTA 301 TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA CTCATCAATG ACCTTAAAAA 361 CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC AATGGATACA TATCACAGTG 421 GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA GTACCCTATA TGATTGC Predicted gene structure (within gDNA segment 418 to 3924): Exon 1 1018 1076 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 1077 1764 ( 688 n); Pd: 0.755 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 1765 1846 ( 82 n); cDNA 60 141 ( 82 n); score: 1.000 Intron 2 1847 1944 ( 98 n); Pd: 0.961 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 1945 2077 ( 133 n); cDNA 142 274 ( 133 n); score: 1.000 Intron 3 2078 3111 (1034 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 4 3112 3314 ( 203 n); cDNA 275 477 ( 203 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E263954+ 1.000 477 1.000 C PGS_C08HBa0064M21.1+_SGN-E263954+ (1018 1076,1765 1846,1945 2077,3112 3314) Alignment (genomic DNA sequence = upper lines): TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTGG 1077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGATCCCCAA CATCGCTCAC CAGCAGGAAC ATTGACATTT GATAGAAATA CAATGTGTG. 59 TATGTTACAA TTTTTTAGTT TGAAGTTATT TTTCAAATTT AGAAAGTGGG GGAAAAACAG 1137 .......... .......... .......... .......... .......... .......... 59 TAAGTATCAT ATCTACAAAT TATTAGTTAT GGAAGACGAC TCATACTTAA TTAGCTTTAG 1197 .......... .......... .......... .......... .......... .......... 59 CATCAGGTGC TTCCCTGTTC TGTAATAATC ATTTGCAAAA GCTCTCAAGT TAGATAAAGA 1257 .......... .......... .......... .......... .......... .......... 59 GATTCTTCTA TTTGCTACCT GCAGCTTCAG CCTGTTTTAA ACATATTTAA GCATACACAA 1317 .......... .......... .......... .......... .......... .......... 59 AAGACTACAC TCCCTTTTAA AAGTATATTA CACACTATTT GGAGTTCAAG TTTTATCATT 1377 .......... .......... .......... .......... .......... .......... 59 TGTGCATATG CATAAAAAAC TACAGTCCTT TTTCAAGTGA ACTGCACACT ATTTGGGAGT 1437 .......... .......... .......... .......... .......... .......... 59 TCGAGTTTTG TCATTTGTGG ATATGCATTT CCAATTTCTA ACACTAGAAC TAGCATAGAA 1497 .......... .......... .......... .......... .......... .......... 59 CGCTGTCCCA TATTCCTCTT ACTGACTGAT GCTGCATGTG GTTATGGTCT CTATATAAGA 1557 .......... .......... .......... .......... .......... .......... 59 CAGCCTATTG GTGTCTAGTC CATCTTCTGT AAAGGATGTC TACAAAGGTT CTCAGTGAAT 1617 .......... .......... .......... .......... .......... .......... 59 GTTAAGACAT CAGAATTTCA ATAAAACTTT CAAGGGTTAG AAATCATGAT ATTTAACCAA 1677 .......... .......... .......... .......... .......... .......... 59 CTGCTCTTTC ATTATATCTC GCGCCATCAT TTGCGAGCCA ATGAGATATA TCAACATGAA 1737 .......... .......... .......... .......... .......... .......... 59 GTAATGCTTC TCTAATGTAT GCTTCAGGTT CACCTGCTCG AACAGTTGGC TGGCGTGATC 1797 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT CACCTGCTCG AACAGTTGGC TGGCGTGATC 92 CAGGGTTCAT ACATACTAGC TTCATGAAGG ATCTTTGGCC AAGCACCTTG TAAGTTTGTT 1857 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAGGGTTCAT ACATACTAGC TTCATGAAGG ATCTTTGGCC AAGCACCTT. .......... 141 CTCCAAATTG TATTGCGTCA GGGATAAAAC TTTTACTTGA TATCAGTTCA TGTATAATTG 1917 .......... .......... .......... .......... .......... .......... 141 TGTTCGATGA AATGGTAAAT ACATCAGGTA CACATACAAG ATGGGTCATA TGTTGTCAAA 1977 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTA CACATACAAG ATGGGTCATA TGTTGTCAAA 174 TGGTTCCTAC GTTTGGAGTA AGATGTATTC CTTTAGATCA TCACCATATC CAGGACAAGA 2037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCCTAC GTTTGGAGTA AGATGTATTC CTTTAGATCA TCACCATATC CAGGACAAGA 234 CTCATTGCAG CGTGTTATAA TTTTTGGAGA CATGGGAAAG GTAACTTCAG TTGCCAATTA 2097 |||||||||| |||||||||| |||||||||| |||||||||| CTCATTGCAG CGTGTTATAA TTTTTGGAGA CATGGGAAAG .......... .......... 274 CTGATGGTCT GATAATCCAT TTCTCTGCTC TTTCTGGATA TAGTATCAAA ACTAACAGCA 2157 .......... .......... .......... .......... .......... .......... 274 TGTTTTCTTG TAAAAATGAA TTTATAATAG TAAGTATATC ACGCTTGATG TCCCGGGAGT 2217 .......... .......... .......... .......... .......... .......... 274 GTCATTTAAA TTGTTATATT GGGAGGACTA ATCTAATATT CATTCAACTA TCATTCTTCC 2277 .......... .......... .......... .......... .......... .......... 274 TACTCTGGAT ATGAAAATTC AGCTCATTAC ATTCTCGTAT TAGTGAAGGT CCGACTTTTG 2337 .......... .......... .......... .......... .......... .......... 274 GTCCTAAACA GCTTGATTCC ACAGATTAAT GTGAAAGAAT GTTTTCTAGT TTAAAAAAAT 2397 .......... .......... .......... .......... .......... .......... 274 GTTTTGTAGG CATAGATTTT AAGCATCGTT TCAGTAGTAA CTCTTATACC AGGTTCGTAC 2457 .......... .......... .......... .......... .......... .......... 274 AAATTTCTCT GCAGCGCTTC ACTAAGTGCA TTGTAATTCA AGTTTAAGAT GTATGTGAGT 2517 .......... .......... .......... .......... .......... .......... 274 AGTTTTTCGA GCCAACAAAC TGTTCATTTA CTACTGCATA TTTGAACAAC AGTCTCTTCA 2577 .......... .......... .......... .......... .......... .......... 274 TTTACAATCA TATTTCCTTT GGAATGTGTT TGATCGGATA AACTACCAAC TCTATGCTTG 2637 .......... .......... .......... .......... .......... .......... 274 TGTTACCACT GATCCTATAA AAATGTATAG CCACTTCATG TGGCATCAGT CATTTACTTT 2697 .......... .......... .......... .......... .......... .......... 274 TGAATAGAAA TTAAGTGCTA CACTATATAT TGATGGCCAA AGACTAAGCT TGGTTTTTCT 2757 .......... .......... .......... .......... .......... .......... 274 CCTTTGTTGA GCATTTAACG CCAATTGGAA ATTCGCTTGT AGGATTTACC TCTCACTGAC 2817 .......... .......... .......... .......... .......... .......... 274 ATAAGCTGAA TGTTGTGGTA ATCTTTTATG TTCCCCTATG CTGAGTCTCT GTCTGTTCTA 2877 .......... .......... .......... .......... .......... .......... 274 CAATAACTCT GTGCATTTTA CAAAAGCATC ACCAACCATT TACCAACTTG AAGAAGTGTG 2937 .......... .......... .......... .......... .......... .......... 274 CTTCATTGAA TAGTCTGGTG AATATCAGAA GACCCTTTTG GTGTATTATT CTTGTAGTTG 2997 .......... .......... .......... .......... .......... .......... 274 TTTGTTTGAG CAGAAGACCT GGATTCACAG AGTATTGTGT TTTTGTCCTG TTCCTCACCT 3057 .......... .......... .......... .......... .......... .......... 274 CACTCTTTTT GTCAATACGT AAATCACTAG ACTAAACTGC ATAGTGATTT TCAGGCTGAG 3117 |||||| .......... .......... .......... .......... .......... ....GCTGAG 280 CGGGATGGTT CAAATGAGTA TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA 3177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGATGGTT CAAATGAGTA TAGTAATTAT CAGCCAGGCT CACTGAATAC AACGGACCAA 340 CTCATCAATG ACCTTAAAAA CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCAATG ACCTTAAAAA CATTGATATA GTTTTCCATA TAGGAGACAT TACCTATGCC 400 AATGGATACA TATCACAGTG GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGATACA TATCACAGTG GGACCAATTT ACTGCACAAG TGGAACCTGT TGCATCAACA 460 GTACCCTATA TGATTGC 3314 |||||||||| ||||||| GTACCCTATA TGATTGC 477 hqPGS_C08HBa0064M21.1+_SGN-E263954+ (1018 1076,1765 1846,1945 2077,3112 3314) ******************************************************************************** EST sequence 14 +strand 353 n (File: SGN-E316184+) 1 CCAGGCTCAC TGAATACAAC GGACCAACTC ATCAATGACC TTAAAAACAT TGATATAGTT 61 TTCCATATAG GAGACATTAC CTATGCCAAT GGATACATAT CACAGTGGGA CCAATTTACT 121 GCACAAGTGG AACCTGTTGC ATCAACAGTA CCCTATATGA TTGCAAGTGG TAATCATGAG 181 CGTGATTGGC CTGGAACTGG TTCCTTCTAT GATGTTATGG ACTCTGGTGG AGAATGTGGA 241 GTGCTAGCTC AGACCATGTT TTATGTTCCT GCTGATAATA GAGCTAACTT TTGGTATTCC 301 ACAGATTATG GCATGTTTCA CTTCTGCATA ACAGACAGTG AGCATGATTG GAG Predicted gene structure (within gDNA segment 2551 to 5050): Exon 1 3151 3317 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 3318 3417 ( 100 n); Pd: 0.945 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 3418 3543 ( 126 n); cDNA 168 293 ( 126 n); score: 1.000 Intron 2 3544 4380 ( 837 n); Pd: 0.542 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 3 4381 4440 ( 60 n); cDNA 294 353 ( 60 n); score: 0.983 MATCH C08HBa0064M21.1+ SGN-E316184+ 0.997 353 1.000 C PGS_C08HBa0064M21.1+_SGN-E316184+ (3151 3317,3418 3543,4381 4440) Alignment (genomic DNA sequence = upper lines): CCAGGCTCAC TGAATACAAC GGACCAACTC ATCAATGACC TTAAAAACAT TGATATAGTT 3210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGCTCAC TGAATACAAC GGACCAACTC ATCAATGACC TTAAAAACAT TGATATAGTT 60 TTCCATATAG GAGACATTAC CTATGCCAAT GGATACATAT CACAGTGGGA CCAATTTACT 3270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATATAG GAGACATTAC CTATGCCAAT GGATACATAT CACAGTGGGA CCAATTTACT 120 GCACAAGTGG AACCTGTTGC ATCAACAGTA CCCTATATGA TTGCAAGGTT CGCGCCCTTA 3330 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCACAAGTGG AACCTGTTGC ATCAACAGTA CCCTATATGA TTGCAAG... .......... 167 ACAATATTTT CTGTGATTAA GCTTCAATCT TGGCTTTCTC TGTTTATTCT TATATGATAT 3390 .......... .......... .......... .......... .......... .......... 167 ATATATATAT ATATGATCTT CGTGCAGTGG TAATCATGAG CGTGATTGGC CTGGAACTGG 3450 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TGG TAATCATGAG CGTGATTGGC CTGGAACTGG 200 TTCCTTCTAT GATGTTATGG ACTCTGGTGG AGAATGTGGA GTGCTAGCTC AGACCATGTT 3510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTCTAT GATGTTATGG ACTCTGGTGG AGAATGTGGA GTGCTAGCTC AGACCATGTT 260 TTATGTTCCT GCTGATAATA GAGCTAACTT TTGGTAATAA ACTATTCTGT GTTTTTCGTT 3570 |||||||||| |||||||||| |||||||||| ||| TTATGTTCCT GCTGATAATA GAGCTAACTT TTG....... .......... .......... 293 ATATGTGACA TGAAGGTCTG GAGAATTATC TGTTTTGAGT GTCCTCTCTC CATCTCCCAA 3630 .......... .......... .......... .......... .......... .......... 293 CACCCCCACC CCCAACAAGA AAAAGAGAAT CTACGTTCAG TTGTGACAAG TACAAAATGG 3690 .......... .......... .......... .......... .......... .......... 293 GTGCATAACT TTTCTGTATT GGGCAAAAGA GGGGACTTTG AGGATTCTTT AAGTGCTTAT 3750 .......... .......... .......... .......... .......... .......... 293 ACTGAAATAC TCAAAACAGA TCAAGTTTAT GCACATTGAA ACAATTCAAC AGATCAAGTT 3810 .......... .......... .......... .......... .......... .......... 293 CCTTTTTAGT GCAAGGAACA GTTTGTTAAT GATGCAGAAT CAATTCTTAG CATCTTAGAA 3870 .......... .......... .......... .......... .......... .......... 293 TCCCTGTAAG ATTAGAAAGT GGTTCATTTT TGGTTTTTGC TCAACCTGTA ATTACTTCAG 3930 .......... .......... .......... .......... .......... .......... 293 CACTTCGTTA GTGCTGTTTT TATAATACGA TTGCCTTCCT CTCAGAAAAA AATGTTCAAG 3990 .......... .......... .......... .......... .......... .......... 293 TGCTTGTGCT GAAGAATCAT ATTTTCGAGT CATCTCATGA TTCAGAGGTC TTGCTTGGTT 4050 .......... .......... .......... .......... .......... .......... 293 TTAATTTGTC CAGTCTCTAT AGTGAATGAA ATGAGTTGAT TGTTTTTAGT TCATTTTGCA 4110 .......... .......... .......... .......... .......... .......... 293 CTTTTCACAT GTTTGAAATA CTTCAGAAGC TATAGACGAA TATGTTGAAG TTTGGTTTTT 4170 .......... .......... .......... .......... .......... .......... 293 CAGAAACAAA TTGAGAAGCT AGAAATGAGC AAGTTACAAT CCAAAAGGAA GCTTATTTTC 4230 .......... .......... .......... .......... .......... .......... 293 CCTCTCTTTT CAATGCAACT GTGTCTTATA TATTGGGAAT GTGCTTTCAG CAAATATTAT 4290 .......... .......... .......... .......... .......... .......... 293 AGAACACACT CATCCTCAAG AAAATATTAT GGAACACCCT CTTCGATAGC TTCTTACATT 4350 .......... .......... .......... .......... .......... .......... 293 TTGATATGAC CTTGTGTATC CAAACTGCAG GTATTCCACA GATTATGGCA TGTTTCACTT 4410 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTATTCCACA GATTATGGCA TGTTTCACTT 323 CTGCATAGCA GACAGTGAGC ATGATTGGAG 4440 ||||||| || |||||||||| |||||||||| CTGCATAACA GACAGTGAGC ATGATTGGAG 353 hqPGS_C08HBa0064M21.1+_SGN-E316184+ (3151 3317,3418 3543,4381 4440) ******************************************************************************** EST sequence 80 -strand 730 n (File: SGN-E578171-) 1 GCTAACTTTT GGTATTCCAC AGATTATGGC ATGTTTCACT TCTGCATAGC AGACAGTGAG 61 CATGATTGGA GAGAGGGGTC TGAGCAATAC AGATTTATTG AACATTGTCT TGCATCAGTA 121 GACAGACAGA AGCAGCCTTG GCTGATATTT GCTGCTCATC GGGTTCTTGG TTACTCTTCA 181 GACAAATGGT ATGGCTTAGA AGGCTCATTT GAGGAGCCCA TGGGAAGGGA AAGCTTGCAG 241 AAGCTTTGGC AGAAGTATAA AGTGGATATT GCATTTTATG GTCATGTCCA TAACTATGAA 301 AGAACTTGTC CCATTTATCA GAACCAATGT GTTAACTCGG AAAGATCACA CTATTCTGGT 361 ATTGTTAATG GAACAATCCA TGTTGTTGTG GGTGGCGGAG GAAGCCACTT ATCAGAGTTC 421 ACCCCAATTA ATACCACTTG GAGTCTTCAC AGGGATTACG ATTGGGGATT TGTCAAGCTT 481 ACAGCATTTA ATCATTCATC ACTACTTTTT GAATACAAAA AGAGTAGGGA CGGCAAAGTT 541 TATGATTCTT TCACCATCTC AAGAGACTAT AAAGACGTCT TAGCTTGTGT TCACGATGGT 601 TGTGAGCCAA CCACTTTTGC ATCTTAAATC AAACTGTACA TGTATACTAG GGAAAAGAAT 661 TCAGCTACAG AATTTGTTGA AATTGGTTCC AATACAATAC AAGAAGCCAT AATGTAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 3670 to 5939): Exon 1 4373 4690 ( 318 n); cDNA 4 321 ( 318 n); score: 0.991 Intron 1 4691 4804 ( 114 n); Pd: 0.970 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 4805 5196 ( 392 n); cDNA 322 713 ( 392 n); score: 1.000 PPA cDNA 716 730 MATCH C08HBa0064M21.1+ SGN-E578171- 0.996 710 0.973 C PGS_C08HBa0064M21.1+_SGN-E578171- (4373 4690,4805 5196) Alignment (genomic DNA sequence = upper lines): AACTGCAGGT ATTCCACAGA TTATGGCATG TTTCACTTCT GCATAGCAGA CAGTGAGCAT 4432 |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTTGGT ATTCCACAGA TTATGGCATG TTTCACTTCT GCATAGCAGA CAGTGAGCAT 63 GATTGGAGAG AGGGGTCTGA GCAATACAGA TTTATTGAAC ATTGTCTTGC ATCAGTAGAC 4492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGGAGAG AGGGGTCTGA GCAATACAGA TTTATTGAAC ATTGTCTTGC ATCAGTAGAC 123 AGACAGAAGC AGCCTTGGCT GATATTTGCT GCTCATCGGG TTCTTGGTTA CTCTTCAGAC 4552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAGAAGC AGCCTTGGCT GATATTTGCT GCTCATCGGG TTCTTGGTTA CTCTTCAGAC 183 AAATGGTATG GCTTAGAAGG CTCATTTGAG GAGCCCATGG GAAGGGAAAG CTTGCAGAAG 4612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTATG GCTTAGAAGG CTCATTTGAG GAGCCCATGG GAAGGGAAAG CTTGCAGAAG 243 CTTTGGCAGA AGTATAAAGT GGATATTGCA TTTTATGGTC ATGTCCATAA CTATGAAAGA 4672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGCAGA AGTATAAAGT GGATATTGCA TTTTATGGTC ATGTCCATAA CTATGAAAGA 303 ACTTGTCCCA TTTATCAGGT AACCAGTGCT AATTCATTTC AATGTTGAAT CATGCAATTC 4732 |||||||||| |||||||| ACTTGTCCCA TTTATCAG.. .......... .......... .......... .......... 321 TTTTCTCAAG TTCACAGAAC TCAGTACTAC AAATAACATC CATTCTCATT GTTTCACTTT 4792 .......... .......... .......... .......... .......... .......... 321 TCTATGATGC AGAACCAATG TGTTAACTCG GAAAGATCAC ACTATTCTGG TATTGTTAAT 4852 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..AACCAATG TGTTAACTCG GAAAGATCAC ACTATTCTGG TATTGTTAAT 369 GGAACAATCC ATGTTGTTGT GGGTGGCGGA GGAAGCCACT TATCAGAGTT CACCCCAATT 4912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACAATCC ATGTTGTTGT GGGTGGCGGA GGAAGCCACT TATCAGAGTT CACCCCAATT 429 AATACCACTT GGAGTCTTCA CAGGGATTAC GATTGGGGAT TTGTCAAGCT TACAGCATTT 4972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACCACTT GGAGTCTTCA CAGGGATTAC GATTGGGGAT TTGTCAAGCT TACAGCATTT 489 AATCATTCAT CACTACTTTT TGAATACAAA AAGAGTAGGG ACGGCAAAGT TTATGATTCT 5032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCATTCAT CACTACTTTT TGAATACAAA AAGAGTAGGG ACGGCAAAGT TTATGATTCT 549 TTCACCATCT CAAGAGACTA TAAAGACGTC TTAGCTTGTG TTCACGATGG TTGTGAGCCA 5092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCATCT CAAGAGACTA TAAAGACGTC TTAGCTTGTG TTCACGATGG TTGTGAGCCA 609 ACCACTTTTG CATCTTAAAT CAAACTGTAC ATGTATACTA GGGAAAAGAA TTCAGCTACA 5152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACTTTTG CATCTTAAAT CAAACTGTAC ATGTATACTA GGGAAAAGAA TTCAGCTACA 669 GAATTTGTTG AAATTGGTTC CAATACAATA CAAGAAGCCA TAAT 5196 |||||||||| |||||||||| |||||||||| |||||||||| |||| GAATTTGTTG AAATTGGTTC CAATACAATA CAAGAAGCCA TAAT 713 hqPGS_C08HBa0064M21.1+_SGN-E578171- (4373 4690,4805 5196) ******************************************************************************** EST sequence 55 +strand 700 n (File: SGN-E345218+) 1 TGCATAGCAG ACAGTGAGCA TGATTGGAGA GAGGGGTCTG AGCAATACAG ATTTATTGAA 61 CATTGTCTTG CATCAGTAGA CAGACAGAAG CAGCCTTGGC TGATATTTGC TGCTCATCGG 121 GTTCTTGGTT ACTCTTCAGA CAAATGGTAT GGCTTAGAAG GCTCATTTGA GGAGCCCATG 181 GGAAGGGAAA GCTTGCAGAA GCTTTGGCAG AAGTATAAAG TGGATATTGC ATTTTATGGT 241 CATGTCCATA ACTATGAAAG AACTTGTCCC ATTTATCAGA ACCAATGTGT TAACTCGGAA 301 AGATCACACT ATTCTGGTAT TGTTAATGGA ACAATCCATG TTGTTGTGGG TGGCGGAGGA 361 AGCCACTTAT CAGAGTTCAC CCCAATTAAT ACCACTTGGA GTCTTCACAG GGATTACGAT 421 TGGGGATTTG TCAAGCTTAC AGCATTTAAT CATTCATCAC TACTTTTTGA ATACAAAAAG 481 AGTAGGGACG GCAAAGTTTA TGATTCTTTC ACCATCTCAA GAGACTATAA AGACGTCTTA 541 GCTTGTGTTC ACGATGGTTG TGAGCCAACC ACTTTTGCAT CTTAAATCAA ACTGTACATG 601 TATACTAGGG AAAAGAATTC AGCTACAGAA TTTGTTGAAA TTGGTTCCAA TACAATACAA 661 GAAGCCANTA TGTACATTTT CTTTGGTTTT AGCAAAAAAA Predicted gene structure (within gDNA segment 3812 to 5871): Exon 1 4412 4690 ( 279 n); cDNA 1 279 ( 279 n); score: 1.000 Intron 1 4691 4804 ( 114 n); Pd: 0.970 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 4805 5221 ( 417 n); cDNA 280 696 ( 417 n); score: 0.995 MATCH C08HBa0064M21.1+ SGN-E345218+ 0.997 696 0.994 C PGS_C08HBa0064M21.1+_SGN-E345218+ (4412 4690,4805 5221) Alignment (genomic DNA sequence = upper lines): TGCATAGCAG ACAGTGAGCA TGATTGGAGA GAGGGGTCTG AGCAATACAG ATTTATTGAA 4471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATAGCAG ACAGTGAGCA TGATTGGAGA GAGGGGTCTG AGCAATACAG ATTTATTGAA 60 CATTGTCTTG CATCAGTAGA CAGACAGAAG CAGCCTTGGC TGATATTTGC TGCTCATCGG 4531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTCTTG CATCAGTAGA CAGACAGAAG CAGCCTTGGC TGATATTTGC TGCTCATCGG 120 GTTCTTGGTT ACTCTTCAGA CAAATGGTAT GGCTTAGAAG GCTCATTTGA GGAGCCCATG 4591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTGGTT ACTCTTCAGA CAAATGGTAT GGCTTAGAAG GCTCATTTGA GGAGCCCATG 180 GGAAGGGAAA GCTTGCAGAA GCTTTGGCAG AAGTATAAAG TGGATATTGC ATTTTATGGT 4651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGGGAAA GCTTGCAGAA GCTTTGGCAG AAGTATAAAG TGGATATTGC ATTTTATGGT 240 CATGTCCATA ACTATGAAAG AACTTGTCCC ATTTATCAGG TAACCAGTGC TAATTCATTT 4711 |||||||||| |||||||||| |||||||||| ||||||||| CATGTCCATA ACTATGAAAG AACTTGTCCC ATTTATCAG. .......... .......... 279 CAATGTTGAA TCATGCAATT CTTTTCTCAA GTTCACAGAA CTCAGTACTA CAAATAACAT 4771 .......... .......... .......... .......... .......... .......... 279 CCATTCTCAT TGTTTCACTT TTCTATGATG CAGAACCAAT GTGTTAACTC GGAAAGATCA 4831 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AACCAAT GTGTTAACTC GGAAAGATCA 306 CACTATTCTG GTATTGTTAA TGGAACAATC CATGTTGTTG TGGGTGGCGG AGGAAGCCAC 4891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTATTCTG GTATTGTTAA TGGAACAATC CATGTTGTTG TGGGTGGCGG AGGAAGCCAC 366 TTATCAGAGT TCACCCCAAT TAATACCACT TGGAGTCTTC ACAGGGATTA CGATTGGGGA 4951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAGAGT TCACCCCAAT TAATACCACT TGGAGTCTTC ACAGGGATTA CGATTGGGGA 426 TTTGTCAAGC TTACAGCATT TAATCATTCA TCACTACTTT TTGAATACAA AAAGAGTAGG 5011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTCAAGC TTACAGCATT TAATCATTCA TCACTACTTT TTGAATACAA AAAGAGTAGG 486 GACGGCAAAG TTTATGATTC TTTCACCATC TCAAGAGACT ATAAAGACGT CTTAGCTTGT 5071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGGCAAAG TTTATGATTC TTTCACCATC TCAAGAGACT ATAAAGACGT CTTAGCTTGT 546 GTTCACGATG GTTGTGAGCC AACCACTTTT GCATCTTAAA TCAAACTGTA CATGTATACT 5131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCACGATG GTTGTGAGCC AACCACTTTT GCATCTTAAA TCAAACTGTA CATGTATACT 606 AGGGAAAAGA ATTCAGCTAC AGAATTTGTT GAAATTGGTT CCAATACAAT ACAAGAAGCC 5191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAAAAGA ATTCAGCTAC AGAATTTGTT GAAATTGGTT CCAATACAAT ACAAGAAGCC 666 ATAATGTACA TTTTCTTTGG TTTTAGCAAA 5221 | ||||||| |||||||||| |||||||||| ANTATGTACA TTTTCTTTGG TTTTAGCAAA 696 hqPGS_C08HBa0064M21.1+_SGN-E345218+ (4412 4690,4805 5221) ******************************************************************************** EST sequence 71 +strand 615 n (File: SGN-E249303+) 1 TTTTTTTTTG TTGAAATTGG TTCCAATACA ATACAAGAAG CCATAATGTA CATTTTCTTT 61 GGTTTTAGCA AATCTATTTT CACTCATGAC TGAATACAGT TTTCGAGCTC TCATGTGATG 121 CTCTAAAATC TATCCCAAAA TCAGAAATTA GACGCAGCTA TCTCACCTGG GACTGATAAT 181 CTCCTTCTCA GGGAAAAAAT TGGAAAAAGA ATTGGAGCAG TTCACAAAGA AACAATAGCA 241 AATTCCGAAA AATTCTGTAG CAGACTAATT ATGCAAAGAA TAAACAGGAA AGCCATGTGC 301 ATTTCTTTTT TATCCACTGA TGTTACCTTC AACACTGCCT TAATATAATT TCAGCCCTGT 361 TTGAACAATA TTACGTCAAT GATGAATTGT TGGACACCGG AGCAAAAGTT AAGCTGTGGG 421 CCTGCATTCA GAAGCTAAGG ATTTTCAGAG CCCGTTAATC TTCTTCATGT AAAAGTTTAG 481 TGTGCCCAAA TTATGAATAA AGGGTNGACA AGATGAGGAG AAAAGCAGTG AAAGCCCCTT 541 GTTGGATGAA GTCAAAACAC TGTATTCTTT CGCACCATTA TCCTCATCTT ACATGACACA 601 AAAATGTTAC TTTCA Predicted gene structure (within gDNA segment 4496 to 6374): Exon 1 5156 5764 ( 609 n); cDNA 7 615 ( 609 n); score: 0.998 MATCH C08HBa0064M21.1+ SGN-E249303+ 0.998 609 0.990 C PGS_C08HBa0064M21.1+_SGN-E249303+ (5156 5764) Alignment (genomic DNA sequence = upper lines): TTTGTTGAAA TTGGTTCCAA TACAATACAA GAAGCCATAA TGTACATTTT CTTTGGTTTT 5215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGAAA TTGGTTCCAA TACAATACAA GAAGCCATAA TGTACATTTT CTTTGGTTTT 66 AGCAAATCTA TTTTCACTCA TGACTGAATA CAGTTTTCGA GCTCTCATGT GATGCTCTAA 5275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAATCTA TTTTCACTCA TGACTGAATA CAGTTTTCGA GCTCTCATGT GATGCTCTAA 126 AATCTATCCC AAAATCAGAA ATTAGACGCA GCTATCTCAC CTGGGACTGA TAATCTCCTT 5335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTATCCC AAAATCAGAA ATTAGACGCA GCTATCTCAC CTGGGACTGA TAATCTCCTT 186 CTCAGGGAAA AAATTGGAAA AAGAATTGGA GCAGTTCACA AAGAAACAAT AGCAAATTCC 5395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAAA AAATTGGAAA AAGAATTGGA GCAGTTCACA AAGAAACAAT AGCAAATTCC 246 GAAAAATTCT GTAGCAGACT AATTATGCAA AGAATAAACA GGAAAGCCAT GTGCATTTCT 5455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATTCT GTAGCAGACT AATTATGCAA AGAATAAACA GGAAAGCCAT GTGCATTTCT 306 TTTTTATCCA CTGATGTTAC CTTCAACACT GCCTTAATAT AATTTCAGCC CTGTTTGAAC 5515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTATCCA CTGATGTTAC CTTCAACACT GCCTTAATAT AATTTCAGCC CTGTTTGAAC 366 AATATTACGT CAATGATGAA TTGTTGGACA CCGGAGCAAA AGTTAAGCTG TGGGCCTGCA 5575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTACGT CAATGATGAA TTGTTGGACA CCGGAGCAAA AGTTAAGCTG TGGGCCTGCA 426 TTCAGAAGCT AAGGATTTTC AGAGCCCGTT AATCTTCTTC ATGTAAAAGT TTAGTGTGCC 5635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAAGCT AAGGATTTTC AGAGCCCGTT AATCTTCTTC ATGTAAAAGT TTAGTGTGCC 486 CAAATTATGA ATAAAGGGTA GACAAGATGA GGAGAAAAGC AGTGAAAGCC CCTTGTTGGA 5695 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTATGA ATAAAGGGTN GACAAGATGA GGAGAAAAGC AGTGAAAGCC CCTTGTTGGA 546 TGAAGTCAAA ACACTGTATT CTTTCGCACC ATTATCCTCA TCTTACATGA CACAAAAATG 5755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTCAAA ACACTGTATT CTTTCGCACC ATTATCCTCA TCTTACATGA CACAAAAATG 606 TTACTTTCA 5764 ||||||||| TTACTTTCA 615 hqPGS_C08HBa0064M21.1+_SGN-E249303+ (5156 5764) ******************************************************************************** EST sequence 88 +strand 606 n (File: SGN-E325378+) 1 TTTAGCGTCA TACAGGATGA GTTCACACGA CATACGCCGT CCATTTAAAC GCCCGGCGAT 61 CTCCGACCAA CAAAGACGAC GAGAACTTTC ATTGCTCCGC CAGTCCCAAA ACCGCCACGA 121 CGCTCAGCTA CAAGCCCGTC GTTTAGCTTC CACTGTCCTC TCTCTTCAAT CTGACTACAA 181 CTCCTCTTCC CAAGAACAGC AGGTCGACTT AGAAGTTACA GACGAACTTG AATCCTGTCC 241 CGAAGAAGTC GAAGACGATT ATGGACATCA TAAGGACGCA CATGATCTTC GTCAAGCTAC 301 CAAGCTGAGA GGACCTGACG CTCGGTTATG GTTTGCCAAG CAGCTTATGC TTCCTGAGTG 361 GATGATTGAT GTTCCCGATA AATTGAATAC CGATTGGTAT GTATTTGCTA GGCCTGCTGG 421 AAAACGATGT TTCGTTGTTT CTTCAAATGG AACAACAATC AGTAGACTGC GCAATGGAGT 481 TCTCTTGCAC CGTTTTCCTT CTGCTCTACC CAATGGTGCC AGGACTAATA ACAGTAAAGC 541 TGCTCAATCA TACTGTATTC TTGATTGCAT ATTTCACGAG TCTGATGAGA CTTATTATGT 601 CATTGA Predicted gene structure (within gDNA segment 10857 to 8404): Exon 1 10257 9862 ( 396 n); cDNA 1 396 ( 396 n); score: 1.000 Intron 1 9861 9458 ( 404 n); Pd: 0.996 (s: 1.00), Pa: 0.897 (s: 1.00) Exon 2 9457 9274 ( 184 n); cDNA 397 580 ( 184 n); score: 1.000 Intron 2 9273 9192 ( 82 n); Pd: 0.992 (s: 1.00), Pa: 0.991 (s: 0) Exon 3 9191 9166 ( 26 n); cDNA 581 606 ( 26 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E325378+ 1.000 606 1.000 C PGS_C08HBa0064M21.1-_SGN-E325378+ (10257 9862,9457 9274,9191 9166) Alignment (genomic DNA sequence = upper lines): TTTAGCGTCA TACAGGATGA GTTCACACGA CATACGCCGT CCATTTAAAC GCCCGGCGAT 10198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGCGTCA TACAGGATGA GTTCACACGA CATACGCCGT CCATTTAAAC GCCCGGCGAT 60 CTCCGACCAA CAAAGACGAC GAGAACTTTC ATTGCTCCGC CAGTCCCAAA ACCGCCACGA 10138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGACCAA CAAAGACGAC GAGAACTTTC ATTGCTCCGC CAGTCCCAAA ACCGCCACGA 120 CGCTCAGCTA CAAGCCCGTC GTTTAGCTTC CACTGTCCTC TCTCTTCAAT CTGACTACAA 10078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCAGCTA CAAGCCCGTC GTTTAGCTTC CACTGTCCTC TCTCTTCAAT CTGACTACAA 180 CTCCTCTTCC CAAGAACAGC AGGTCGACTT AGAAGTTACA GACGAACTTG AATCCTGTCC 10018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTCTTCC CAAGAACAGC AGGTCGACTT AGAAGTTACA GACGAACTTG AATCCTGTCC 240 CGAAGAAGTC GAAGACGATT ATGGACATCA TAAGGACGCA CATGATCTTC GTCAAGCTAC 9958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGAAGTC GAAGACGATT ATGGACATCA TAAGGACGCA CATGATCTTC GTCAAGCTAC 300 CAAGCTGAGA GGACCTGACG CTCGGTTATG GTTTGCCAAG CAGCTTATGC TTCCTGAGTG 9898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCTGAGA GGACCTGACG CTCGGTTATG GTTTGCCAAG CAGCTTATGC TTCCTGAGTG 360 GATGATTGAT GTTCCCGATA AATTGAATAC CGATTGGTGA TATTTCAATA GCATCTCCAT 9838 |||||||||| |||||||||| |||||||||| |||||| GATGATTGAT GTTCCCGATA AATTGAATAC CGATTG.... .......... .......... 396 ATTTATATAT TCAATTTTTA TATTCTAATT TCACTTAATA AGTCTCCAAA TGTTGATGCT 9778 .......... .......... .......... .......... .......... .......... 396 TGTAGAATGT TTGATGTTAA ATATTCACAG AGATTGAGGT CATAATGGCA TTTCAACTTT 9718 .......... .......... .......... .......... .......... .......... 396 GTTTGGACAT AGTGGAGGTT CAACTTTTGT AGAGACTAGG TTAAAATTAA ATGCTTTTTG 9658 .......... .......... .......... .......... .......... .......... 396 CTTGAACTAT AAAATACTTC ATACTTGGTT TGTTCTACTT TGATGCCATG GTTATCTGCA 9598 .......... .......... .......... .......... .......... .......... 396 CCTTAGCCTA CCACAAAAAC TTCACTTACT TGTCGGACGA GTAGTCAGAA CTGTATATTT 9538 .......... .......... .......... .......... .......... .......... 396 TCTGTGGATG TCTTGCTTGA TTCAAACTAA ACAAACACAA TCAAGCACAT TATTAATCTT 9478 .......... .......... .......... .......... .......... .......... 396 GGGTTGAATT TGTCGGGCAG GTATGTATTT GCTAGGCCTG CTGGAAAACG ATGTTTCGTT 9418 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTATGTATTT GCTAGGCCTG CTGGAAAACG ATGTTTCGTT 436 GTTTCTTCAA ATGGAACAAC AATCAGTAGA CTGCGCAATG GAGTTCTCTT GCACCGTTTT 9358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTTCAA ATGGAACAAC AATCAGTAGA CTGCGCAATG GAGTTCTCTT GCACCGTTTT 496 CCTTCTGCTC TACCCAATGG TGCCAGGACT AATAACAGTA AAGCTGCTCA ATCATACTGT 9298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTGCTC TACCCAATGG TGCCAGGACT AATAACAGTA AAGCTGCTCA ATCATACTGT 556 ATTCTTGATT GCATATTTCA CGAGGTAACA ATTGAAACAT GTAACATTGT TGCTCATATT 9238 |||||||||| |||||||||| |||| ATTCTTGATT GCATATTTCA CGAG...... .......... .......... .......... 580 TTGTTCTGTA TATCTGAAAT ATTCTGCACT GCCTTTGTTG TGGCAGTCTG ATGAGACTTA 9178 |||| |||||||||| .......... .......... .......... .......... ......TCTG ATGAGACTTA 594 TTATGTCATT GA 9166 |||||||||| || TTATGTCATT GA 606 hqPGS_C08HBa0064M21.1-_SGN-E325378+ (10257 9862,9457 9274,9191 9166) ******************************************************************************** EST sequence 9 +strand 630 n (File: SGN-E304303+) 1 AGAAATTGAC TAGGAAAGAA ACCAAAATTG AAACATGGCT CCAAAGGGCA AGGTCATCAG 61 TTGCAGAGCT GCTGTAGCGT ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT 121 AGATCCACCT CAGAAAATGG AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC 181 GGATCTCAGT GCTTGGAAAG GCGAGAGCGA AGCTCAACGA GCTTATCCTC GAATTCTGGG 241 ACATGAAGCA TCGGGAGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 301 AGATCAAGTC GTAACGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 361 AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 421 TGACGGAAAA TGCAGGTTCA GGAACAAGGA TGGCATACCC ATTTATCATT TTCTTAGTAC 481 TTCAACATTC ACCGAATACA CTGTTGGTGA TTCTGCTTGC TTAGTCAAAA TTGACCCTCA 541 TGCCTCACTT GACAAGATGA CCTTGCTTAG CTGCGGCGTA TCCACTGGTC TAGGGGCTGC 601 GTGGAACACG GCTGACGTTC AAACAGGGGA Predicted gene structure (within gDNA segment 19631 to 21973): Exon 1 20231 20298 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 69 205 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 20595 20644 ( 50 n); cDNA 206 255 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 20726 21057 ( 332 n); cDNA 256 587 ( 332 n); score: 0.994 Intron 4 21058 21320 ( 263 n); Pd: 1.000 (s: 1.00), Pa: 0.349 (s: 1.00) Exon 5 21321 21363 ( 43 n); cDNA 588 630 ( 43 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E304303+ 0.997 630 1.000 C PGS_C08HBa0064M21.1+_SGN-E304303+ (20231 20298,20370 20506,20595 20644,20726 21057,21321 21363) Alignment (genomic DNA sequence = upper lines): AGAAATTGAC TAGGAAAGAA ACCAAAATTG AAACATGGCT CCAAAGGGCA AGGTCATCAG 20290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATTGAC TAGGAAAGAA ACCAAAATTG AAACATGGCT CCAAAGGGCA AGGTCATCAG 60 TTGCAGAGGT AATAAATTTC TTCTTCTTCT TCTTGTGAAT AATAATAATA ATAAATTAAA 20350 |||||||| TTGCAGAG.. .......... .......... .......... .......... .......... 68 CGTTTTGTTG TTGTTGCAGC TGCTGTAGCG TATGGTCCAG GGCAGCCGTT GGTGGTAGAA 20410 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........C TGCTGTAGCG TATGGTCCAG GGCAGCCGTT GGTGGTAGAA 109 CAAGTGCAGG TAGATCCACC TCAGAAAATG GAGGTCCGAA TTAAGATTCT CTTTACTTCC 20470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGCAGG TAGATCCACC TCAGAAAATG GAGGTCCGAA TTAAGATTCT CTTTACTTCC 169 ATCTGTCACA CGGATCTCAG TGCTTGGAAA GGCGAGGTAC AACATATATG TTAAGATTGT 20530 |||||||||| |||||||||| |||||||||| |||||| ATCTGTCACA CGGATCTCAG TGCTTGGAAA GGCGAG.... .......... .......... 205 GATGGATCGA TCCATGATAT ATGATCTAAT TTGATTTTTT ATTTTTTATT TTCATAATAT 20590 .......... .......... .......... .......... .......... .......... 205 AAAGAGCGAA GCTCAACGAG CTTATCCTCG AATTCTGGGA CATGAAGCAT CGGGGTAAGT 20650 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ....AGCGAA GCTCAACGAG CTTATCCTCG AATTCTGGGA CATGAAGCAT CGGG...... 255 TTAATACTTG TAGAGTAGTT ATTATTAGTA ATGTAAAGTA AAGTAAATAA GTAATTATTA 20710 .......... .......... .......... .......... .......... .......... 255 AGAAACACAT TACAGAGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 20770 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....AGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 300 AGATCAAGTC GTAGCGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 20830 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCAAGTC GTAACGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 360 AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 20890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 420 TGACGGAAAA TGCAGGTTCA GGAACAAGGA TGGCATACCC ATTTATCATT TTCTTAGTAC 20950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGGAAAA TGCAGGTTCA GGAACAAGGA TGGCATACCC ATTTATCATT TTCTTAGTAC 480 TTCAACATTC ACCGAATACA CTGTTGTTGA TTCTGCTTGC TTAGTCAAAA TTGACCCTCA 21010 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTCAACATTC ACCGAATACA CTGTTGGTGA TTCTGCTTGC TTAGTCAAAA TTGACCCTCA 540 TGCCTCACTT GACAAGATGA CCTTGCTTAG CTGCGGCGTA TCCACTGGTA ATTAATTAAT 21070 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGCCTCACTT GACAAGATGA CCTTGCTTAG CTGCGGCGTA TCCACTG... .......... 587 TCTCTTTTCT TTTTTTCAAC TTTTACATAA ATTTATAATC ATGAATATTT TTAATTAGAA 21130 .......... .......... .......... .......... .......... .......... 587 CTAGATCCAC ACATTAATTT TTTCTAATAT TAAAATACTT GGATATGACC GAGACCACTT 21190 .......... .......... .......... .......... .......... .......... 587 TCTAAAACAA AACAAAACAA AAAAAAAAAA AAGCAATGGA ACATGATATT TATTGATTAG 21250 .......... .......... .......... .......... .......... .......... 587 TGGGTAAGAC TTTGTTTTTT GATTATAAAG GCAAGTAGGG CATAGGAATT AAATGGGATG 21310 .......... .......... .......... .......... .......... .......... 587 GATGATGCAG GTCTAGGGGC TGCGTGGAAC ACGGCTGACG TTCAAACAGG GGA 21363 |||||||||| |||||||||| |||||||||| |||||||||| ||| .......... GTCTAGGGGC TGCGTGGAAC ACGGCTGACG TTCAAACAGG GGA 630 hqPGS_C08HBa0064M21.1+_SGN-E304303+ (20231 20298,20370 20506,20595 20644,20726 21057,21321 21363) ******************************************************************************** EST sequence 4 +strand 523 n (File: SGN-E325181+) 1 AAATTGACTA GGAAAGAAAC CAAAATTGAA ACCATGGCTC CAAAGGGCAA GGTCATCAGT 61 TGCAGAGCTG CTGTAGCGTA TGGTCCAGGG CAGCCGTTGG TGGTAGAACA AGTGCAGGTA 121 GATCCACCTC AGAAAATGGA GGTCCGAATT AAGATTCTCT TTACTTCCAT CTGTCACACG 181 GATCTCAGTG CTTGGAAAGG CGAGAGCGAA GCTCAACGAG CTTATCCTCG AATTCTGGGA 241 CCATGAAGCA TCGGGAGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 301 AGATCAAGTC GTAGCGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 361 AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 421 TGACGGAAAA TGCAGGTTCA GGAACCAAGG ATGGCATACC CATTTATCAT TTTCTTAGTA 481 CTTCAACATT CACCGAATAC ACTGTTGTTG ATTCTGCTTG CTT Predicted gene structure (within gDNA segment 19633 to 21602): Exon 1 20233 20298 ( 66 n); cDNA 1 67 ( 67 n); score: 0.962 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 0.95), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 68 204 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 0.95) Exon 3 20595 20644 ( 50 n); cDNA 205 255 ( 51 n); score: 0.950 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 0.95), Pa: 0.986 (s: 1.00) Exon 4 20726 20992 ( 267 n); cDNA 256 523 ( 268 n); score: 0.991 MATCH C08HBa0064M21.1+ SGN-E325181+ 0.986 520 0.994 C PGS_C08HBa0064M21.1+_SGN-E325181+ (20233 20298,20370 20506,20595 20644,20726 20992) Alignment (genomic DNA sequence = upper lines): AAATTGACTA GGAAAGAAAC CAAAATTGAA A-CATGGCTC CAAAGGGCAA GGTCATCAGT 20291 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AAATTGACTA GGAAAGAAAC CAAAATTGAA ACCATGGCTC CAAAGGGCAA GGTCATCAGT 60 TGCAGAGGTA ATAAATTTCT TCTTCTTCTT CTTGTGAATA ATAATAATAA TAAATTAAAC 20351 ||||||| TGCAGAG... .......... .......... .......... .......... .......... 67 GTTTTGTTGT TGTTGCAGCT GCTGTAGCGT ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC 20411 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CT GCTGTAGCGT ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC 109 AAGTGCAGGT AGATCCACCT CAGAAAATGG AGGTCCGAAT TAAGATTCTC TTTACTTCCA 20471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGCAGGT AGATCCACCT CAGAAAATGG AGGTCCGAAT TAAGATTCTC TTTACTTCCA 169 TCTGTCACAC GGATCTCAGT GCTTGGAAAG GCGAGGTACA ACATATATGT TAAGATTGTG 20531 |||||||||| |||||||||| |||||||||| ||||| TCTGTCACAC GGATCTCAGT GCTTGGAAAG GCGAG..... .......... .......... 204 ATGGATCGAT CCATGATATA TGATCTAATT TGATTTTTTA TTTTTTATTT TCATAATATA 20591 .......... .......... .......... .......... .......... .......... 204 AAGAGCGAAG CTCAACGAGC TTATCCTCGA ATTCTGGGA- CATGAAGCAT CGGGGTAAGT 20650 ||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||| ...AGCGAAG CTCAACGAGC TTATCCTCGA ATTCTGGGAC CATGAAGCAT CGGG...... 255 TTAATACTTG TAGAGTAGTT ATTATTAGTA ATGTAAAGTA AAGTAAATAA GTAATTATTA 20710 .......... .......... .......... .......... .......... .......... 255 AGAAACACAT TACAGAGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 20770 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....AGTGG TGGAGAGCGT GGGAGAAGGT GTAATTGACA TGAAAGAGGG 300 AGATCAAGTC GTAGCGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 20830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCAAGTC GTAGCGATTT TCAATGGTGA ATGCGGAGAG TGCATATATT GCAAATCATC 360 AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 20890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA TTCAAAAGTG TGATGGAAAG 420 TGACGGAAAA TGCAGGTTCA GGAA-CAAGG ATGGCATACC CATTTATCAT TTTCTTAGTA 20949 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TGACGGAAAA TGCAGGTTCA GGAACCAAGG ATGGCATACC CATTTATCAT TTTCTTAGTA 480 CTTCAACATT CACCGAATAC ACTGTTGTTG ATTCTGCTTG CTT 20992 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTCAACATT CACCGAATAC ACTGTTGTTG ATTCTGCTTG CTT 523 hqPGS_C08HBa0064M21.1+_SGN-E325181+ (20233 20298,20370 20506,20595 20644,20726 20992) ******************************************************************************** EST sequence 73 +strand 568 n (File: SGN-E301096+) 1 AAAATTGAAA CATGGCTCCA AAGGGCAAGG TCATCAGTTG CAGAGCTGCT GTAGCGTATG 61 GTCCAGGGCA GCCGTTGGTG GTAGAACAAG TGCAGGTAGA TCCACCTCAG AAAATGGAGG 121 TCCGAATTAA GATTCTCTTT ACTTCCATCT GTCACACGGA TCTCAGTGCT TGGAAAGGCG 181 AGAGCGAAGC TCAACGAGCT TATCCTCGAA TTCTGGGACA TGAAGCATCG GGAGTGGTGG 241 AGAGCGTGGG AGAAGGTGTA ATTGACATGA AAGAGGGAGA TCAAGTCGTA GCGATTTTCA 301 ATGGTGAATG CGGAGAGTGC ATATATTGCA AATCATCAAA GAAAACCAAC TTGTGTGGCA 361 AGTTCCGCGT CAATCCATTC AAAAGTGTGA TGGAAAGTGA CGGAAAATGC AGGTTCAGGA 421 ACAAGGATGG CATACCCATT TATCATTTTC TTAGTACTTC AACATTCACC GAATACACTG 481 TTGTTGATTC TGCTTGCTTA GTCAAAATTG ACCCTCATGC CTCACTTGAC AAGATGACCT 541 TGCTTAGCTG CGGCGTATCC ACTGGTCT Predicted gene structure (within gDNA segment 19654 to 21689): Exon 1 20254 20298 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 46 182 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 20595 20644 ( 50 n); cDNA 183 232 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 20726 21057 ( 332 n); cDNA 233 564 ( 332 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E301096+ 1.000 564 0.993 C PGS_C08HBa0064M21.1+_SGN-E301096+ (20254 20298,20370 20506,20595 20644,20726 21057) Alignment (genomic DNA sequence = upper lines): AAAATTGAAA CATGGCTCCA AAGGGCAAGG TCATCAGTTG CAGAGGTAAT AAATTTCTTC 20313 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAAATTGAAA CATGGCTCCA AAGGGCAAGG TCATCAGTTG CAGAG..... .......... 45 TTCTTCTTCT TGTGAATAAT AATAATAATA AATTAAACGT TTTGTTGTTG TTGCAGCTGC 20373 |||| .......... .......... .......... .......... .......... ......CTGC 49 TGTAGCGTAT GGTCCAGGGC AGCCGTTGGT GGTAGAACAA GTGCAGGTAG ATCCACCTCA 20433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCGTAT GGTCCAGGGC AGCCGTTGGT GGTAGAACAA GTGCAGGTAG ATCCACCTCA 109 GAAAATGGAG GTCCGAATTA AGATTCTCTT TACTTCCATC TGTCACACGG ATCTCAGTGC 20493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGGAG GTCCGAATTA AGATTCTCTT TACTTCCATC TGTCACACGG ATCTCAGTGC 169 TTGGAAAGGC GAGGTACAAC ATATATGTTA AGATTGTGAT GGATCGATCC ATGATATATG 20553 |||||||||| ||| TTGGAAAGGC GAG....... .......... .......... .......... .......... 182 ATCTAATTTG ATTTTTTATT TTTTATTTTC ATAATATAAA GAGCGAAGCT CAACGAGCTT 20613 ||||||||| |||||||||| .......... .......... .......... .......... .AGCGAAGCT CAACGAGCTT 201 ATCCTCGAAT TCTGGGACAT GAAGCATCGG GGTAAGTTTA ATACTTGTAG AGTAGTTATT 20673 |||||||||| |||||||||| |||||||||| | ATCCTCGAAT TCTGGGACAT GAAGCATCGG G......... .......... .......... 232 ATTAGTAATG TAAAGTAAAG TAAATAAGTA ATTATTAAGA AACACATTAC AGAGTGGTGG 20733 |||||||| .......... .......... .......... .......... .......... ..AGTGGTGG 240 AGAGCGTGGG AGAAGGTGTA ATTGACATGA AAGAGGGAGA TCAAGTCGTA GCGATTTTCA 20793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCGTGGG AGAAGGTGTA ATTGACATGA AAGAGGGAGA TCAAGTCGTA GCGATTTTCA 300 ATGGTGAATG CGGAGAGTGC ATATATTGCA AATCATCAAA GAAAACCAAC TTGTGTGGCA 20853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGAATG CGGAGAGTGC ATATATTGCA AATCATCAAA GAAAACCAAC TTGTGTGGCA 360 AGTTCCGCGT CAATCCATTC AAAAGTGTGA TGGAAAGTGA CGGAAAATGC AGGTTCAGGA 20913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCGCGT CAATCCATTC AAAAGTGTGA TGGAAAGTGA CGGAAAATGC AGGTTCAGGA 420 ACAAGGATGG CATACCCATT TATCATTTTC TTAGTACTTC AACATTCACC GAATACACTG 20973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGATGG CATACCCATT TATCATTTTC TTAGTACTTC AACATTCACC GAATACACTG 480 TTGTTGATTC TGCTTGCTTA GTCAAAATTG ACCCTCATGC CTCACTTGAC AAGATGACCT 21033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGATTC TGCTTGCTTA GTCAAAATTG ACCCTCATGC CTCACTTGAC AAGATGACCT 540 TGCTTAGCTG CGGCGTATCC ACTG 21057 |||||||||| |||||||||| |||| TGCTTAGCTG CGGCGTATCC ACTG 564 hqPGS_C08HBa0064M21.1+_SGN-E301096+ (20254 20298,20370 20506,20595 20644,20726 21057) ******************************************************************************** EST sequence 64 +strand 239 n (File: SGN-E394663+) 1 AAACATGGCT CCAAAGGGCA AGGTCATCAG TTGCAGAGCT GCTGTAGCGT ATGGTCCAGG 61 GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG AGGTCCGAAT 121 TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG GCGAGAGCGA 181 AGCTCAACGA GCTTATCCTC GAATTCTGGG ACATGAAACA TCGGGAGTGG TGGAGAGAT Predicted gene structure (within gDNA segment 19661 to 21466): Exon 1 20261 20298 ( 38 n); cDNA 1 38 ( 38 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 39 175 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 3 20595 20644 ( 50 n); cDNA 176 225 ( 50 n); score: 0.980 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 0.98), Pa: 0.986 (s: 0) Exon 4 20726 20737 ( 12 n); cDNA 226 237 ( 12 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E394663+ 0.995 237 0.992 C PGS_C08HBa0064M21.1+_SGN-E394663+ (20261 20298,20370 20506,20595 20644,20726 20737) Alignment (genomic DNA sequence = upper lines): AAACATGGCT CCAAAGGGCA AGGTCATCAG TTGCAGAGGT AATAAATTTC TTCTTCTTCT 20320 |||||||||| |||||||||| |||||||||| |||||||| AAACATGGCT CCAAAGGGCA AGGTCATCAG TTGCAGAG.. .......... .......... 38 TCTTGTGAAT AATAATAATA ATAAATTAAA CGTTTTGTTG TTGTTGCAGC TGCTGTAGCG 20380 | |||||||||| .......... .......... .......... .......... .........C TGCTGTAGCG 49 TATGGTCCAG GGCAGCCGTT GGTGGTAGAA CAAGTGCAGG TAGATCCACC TCAGAAAATG 20440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTCCAG GGCAGCCGTT GGTGGTAGAA CAAGTGCAGG TAGATCCACC TCAGAAAATG 109 GAGGTCCGAA TTAAGATTCT CTTTACTTCC ATCTGTCACA CGGATCTCAG TGCTTGGAAA 20500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTCCGAA TTAAGATTCT CTTTACTTCC ATCTGTCACA CGGATCTCAG TGCTTGGAAA 169 GGCGAGGTAC AACATATATG TTAAGATTGT GATGGATCGA TCCATGATAT ATGATCTAAT 20560 |||||| GGCGAG.... .......... .......... .......... .......... .......... 175 TTGATTTTTT ATTTTTTATT TTCATAATAT AAAGAGCGAA GCTCAACGAG CTTATCCTCG 20620 |||||| |||||||||| |||||||||| .......... .......... .......... ....AGCGAA GCTCAACGAG CTTATCCTCG 201 AATTCTGGGA CATGAAGCAT CGGGGTAAGT TTAATACTTG TAGAGTAGTT ATTATTAGTA 20680 |||||||||| |||||| ||| |||| AATTCTGGGA CATGAAACAT CGGG...... .......... .......... .......... 225 ATGTAAAGTA AAGTAAATAA GTAATTATTA AGAAACACAT TACAGAGTGG TGGAGAG 20737 ||||| ||||||| .......... .......... .......... .......... .....AGTGG TGGAGAG 237 hqPGS_C08HBa0064M21.1+_SGN-E394663+ (20261 20298,20370 20506,20595 20644,20726 20737) ******************************************************************************** EST sequence 21 +strand 657 n (File: SGN-E373433+) 1 AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGCTG CTGTAGCGTA TGGTCCAGGG 61 CAGCCGTTGG TGGTAGAACA AGTGCAGGTA GATCCACCTC AGAAAATGGA GGTCCGAATT 121 AAGATTCTCT TTACTTCCAT CTGTCACACG GATCTCAGTG CTTGGAAAGG CGAGAGCGAA 181 GCTCAACGAG CTTATCCTCG AATTCTGGGA CATGAAGCAT CGGGAGTGGT GGAGAGCGTG 241 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 301 TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 361 GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 421 GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 481 TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 541 TGCGGCGTAT CCACTGGTCT AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA 601 ACGGTGGCAG TCTTTGGATT AGGAGCTGTT GGTTTGGCCG TTGTTTAAGG GGCACGG Predicted gene structure (within gDNA segment 19662 to 22175): Exon 1 20262 20298 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 38 174 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 20595 20644 ( 50 n); cDNA 175 224 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 20726 21057 ( 332 n); cDNA 225 556 ( 332 n); score: 1.000 Intron 4 21058 21320 ( 263 n); Pd: 1.000 (s: 1.00), Pa: 0.349 (s: 1.00) Exon 5 21321 21403 ( 83 n); cDNA 557 639 ( 83 n); score: 1.000 Intron 5 21404 21556 ( 153 n); Pd: 0.976 (s: 1.00), Pa: 0.999 (s: 0) Exon 6 21557 21574 ( 18 n); cDNA 640 657 ( 18 n); score: 0.944 MATCH C08HBa0064M21.1+ SGN-E373433+ 1.000 657 1.000 C PGS_C08HBa0064M21.1+_SGN-E373433+ (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21574) Alignment (genomic DNA sequence = upper lines): AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGGTA ATAAATTTCT TCTTCTTCTT 20321 |||||||||| |||||||||| |||||||||| ||||||| AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAG... .......... .......... 37 CTTGTGAATA ATAATAATAA TAAATTAAAC GTTTTGTTGT TGTTGCAGCT GCTGTAGCGT 20381 || |||||||||| .......... .......... .......... .......... ........CT GCTGTAGCGT 49 ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 20441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 109 AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 20501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 169 GCGAGGTACA ACATATATGT TAAGATTGTG ATGGATCGAT CCATGATATA TGATCTAATT 20561 ||||| GCGAG..... .......... .......... .......... .......... .......... 174 TGATTTTTTA TTTTTTATTT TCATAATATA AAGAGCGAAG CTCAACGAGC TTATCCTCGA 20621 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AGCGAAG CTCAACGAGC TTATCCTCGA 201 ATTCTGGGAC ATGAAGCATC GGGGTAAGTT TAATACTTGT AGAGTAGTTA TTATTAGTAA 20681 |||||||||| |||||||||| ||| ATTCTGGGAC ATGAAGCATC GGG....... .......... .......... .......... 224 TGTAAAGTAA AGTAAATAAG TAATTATTAA GAAACACATT ACAGAGTGGT GGAGAGCGTG 20741 |||||| |||||||||| .......... .......... .......... .......... ....AGTGGT GGAGAGCGTG 240 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 20801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 300 TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 20861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 360 GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 20921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 420 GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 20981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 480 TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 21041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 540 TGCGGCGTAT CCACTGGTAA TTAATTAATT CTCTTTTCTT TTTTTCAACT TTTACATAAA 21101 |||||||||| |||||| TGCGGCGTAT CCACTG.... .......... .......... .......... .......... 556 TTTATAATCA TGAATATTTT TAATTAGAAC TAGATCCACA CATTAATTTT TTCTAATATT 21161 .......... .......... .......... .......... .......... .......... 556 AAAATACTTG GATATGACCG AGACCACTTT CTAAAACAAA ACAAAACAAA AAAAAAAAAA 21221 .......... .......... .......... .......... .......... .......... 556 AGCAATGGAA CATGATATTT ATTGATTAGT GGGTAAGACT TTGTTTTTTG ATTATAAAGG 21281 .......... .......... .......... .......... .......... .......... 556 CAAGTAGGGC ATAGGAATTA AATGGGATGG ATGATGCAGG TCTAGGGGCT GCGTGGAACA 21341 | |||||||||| |||||||||| .......... .......... .......... .........G TCTAGGGGCT GCGTGGAACA 577 CGGCTGACGT TCAAACAGGG GAAACGGTGG CAGTCTTTGG ATTAGGAGCT GTTGGTTTGG 21401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCTGACGT TCAAACAGGG GAAACGGTGG CAGTCTTTGG ATTAGGAGCT GTTGGTTTGG 637 CCGTAAGCTT TTCTCTAATA AATAAAAACA ATTGTTTTGT CTCCATCAAT TAAATACCCT 21461 || CC........ .......... .......... .......... .......... .......... 639 CACATGGATT AGTACCTTAC CCAATTTATT TTACTTATAA TAATAAAGTC AACAATATAT 21521 .......... .......... .......... .......... .......... .......... 639 TTCTGGTCCT AATTAAAAAA TTCAATTTGC TGCAGGTTGT TGAAGGGGCA CGG 21574 ||||| | |||||||| ||| .......... .......... .......... .....GTTGT TTAAGGGGCA CGG 657 hqPGS_C08HBa0064M21.1+_SGN-E373433+ (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21574) ******************************************************************************** EST sequence 22 +strand 644 n (File: SGN-E373345+) 1 AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGCTG CTGTAGCGTA TGGTCCAGGG 61 CAGCCGTTGG TGGTAGAACA AGTGCAGGTA GATCCACCTC AGAAAATGGA GGTCCGAATT 121 AAGATTCTCT TTACTTCCAT CTGTCACACG GATCTCAGTG CTTGGAAAGG CGAGAGCGAA 181 GCTCAACGAG CTTATCCTCG AATTCTGGGA CATGAAGCAT CGGGAGTGGT GGAGAGCGTG 241 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 301 TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 361 GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 421 GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 481 TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 541 TGCGGCGTAT CCACTGGTCT AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA 601 ACGGTGGCAG TCTTTGGATT ATGAGCTGTT GGTTTGGCCG TTGT Predicted gene structure (within gDNA segment 19662 to 22045): Exon 1 20262 20298 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 38 174 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 20595 20644 ( 50 n); cDNA 175 224 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 20726 21057 ( 332 n); cDNA 225 556 ( 332 n); score: 1.000 Intron 4 21058 21320 ( 263 n); Pd: 1.000 (s: 1.00), Pa: 0.349 (s: 1.00) Exon 5 21321 21403 ( 83 n); cDNA 557 639 ( 83 n); score: 0.988 Intron 5 21404 21556 ( 153 n); Pd: 0.976 (s: 0.98), Pa: 0.999 (s: 0) Exon 6 21557 21561 ( 5 n); cDNA 640 644 ( 5 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E373345+ 0.998 644 1.000 C PGS_C08HBa0064M21.1+_SGN-E373345+ (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21561) Alignment (genomic DNA sequence = upper lines): AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGGTA ATAAATTTCT TCTTCTTCTT 20321 |||||||||| |||||||||| |||||||||| ||||||| AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAG... .......... .......... 37 CTTGTGAATA ATAATAATAA TAAATTAAAC GTTTTGTTGT TGTTGCAGCT GCTGTAGCGT 20381 || |||||||||| .......... .......... .......... .......... ........CT GCTGTAGCGT 49 ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 20441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 109 AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 20501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 169 GCGAGGTACA ACATATATGT TAAGATTGTG ATGGATCGAT CCATGATATA TGATCTAATT 20561 ||||| GCGAG..... .......... .......... .......... .......... .......... 174 TGATTTTTTA TTTTTTATTT TCATAATATA AAGAGCGAAG CTCAACGAGC TTATCCTCGA 20621 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AGCGAAG CTCAACGAGC TTATCCTCGA 201 ATTCTGGGAC ATGAAGCATC GGGGTAAGTT TAATACTTGT AGAGTAGTTA TTATTAGTAA 20681 |||||||||| |||||||||| ||| ATTCTGGGAC ATGAAGCATC GGG....... .......... .......... .......... 224 TGTAAAGTAA AGTAAATAAG TAATTATTAA GAAACACATT ACAGAGTGGT GGAGAGCGTG 20741 |||||| |||||||||| .......... .......... .......... .......... ....AGTGGT GGAGAGCGTG 240 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 20801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAATGGTGAA 300 TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 20861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGGAGAGT GCATATATTG CAAATCATCA AAGAAAACCA ACTTGTGTGG CAAGTTCCGC 360 GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 20921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATCCAT TCAAAAGTGT GATGGAAAGT GACGGAAAAT GCAGGTTCAG GAACAAGGAT 420 GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 20981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATACCCA TTTATCATTT TCTTAGTACT TCAACATTCA CCGAATACAC TGTTGTTGAT 480 TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 21041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTTGCT TAGTCAAAAT TGACCCTCAT GCCTCACTTG ACAAGATGAC CTTGCTTAGC 540 TGCGGCGTAT CCACTGGTAA TTAATTAATT CTCTTTTCTT TTTTTCAACT TTTACATAAA 21101 |||||||||| |||||| TGCGGCGTAT CCACTG.... .......... .......... .......... .......... 556 TTTATAATCA TGAATATTTT TAATTAGAAC TAGATCCACA CATTAATTTT TTCTAATATT 21161 .......... .......... .......... .......... .......... .......... 556 AAAATACTTG GATATGACCG AGACCACTTT CTAAAACAAA ACAAAACAAA AAAAAAAAAA 21221 .......... .......... .......... .......... .......... .......... 556 AGCAATGGAA CATGATATTT ATTGATTAGT GGGTAAGACT TTGTTTTTTG ATTATAAAGG 21281 .......... .......... .......... .......... .......... .......... 556 CAAGTAGGGC ATAGGAATTA AATGGGATGG ATGATGCAGG TCTAGGGGCT GCGTGGAACA 21341 | |||||||||| |||||||||| .......... .......... .......... .........G TCTAGGGGCT GCGTGGAACA 577 CGGCTGACGT TCAAACAGGG GAAACGGTGG CAGTCTTTGG ATTAGGAGCT GTTGGTTTGG 21401 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CGGCTGACGT TCAAACAGGG GAAACGGTGG CAGTCTTTGG ATTATGAGCT GTTGGTTTGG 637 CCGTAAGCTT TTCTCTAATA AATAAAAACA ATTGTTTTGT CTCCATCAAT TAAATACCCT 21461 || CC........ .......... .......... .......... .......... .......... 639 CACATGGATT AGTACCTTAC CCAATTTATT TTACTTATAA TAATAAAGTC AACAATATAT 21521 .......... .......... .......... .......... .......... .......... 639 TTCTGGTCCT AATTAAAAAA TTCAATTTGC TGCAGGTTGT 21561 ||||| .......... .......... .......... .....GTTGT 644 hqPGS_C08HBa0064M21.1+_SGN-E373345+ (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21561) ******************************************************************************** EST sequence 58 +strand 294 n (File: SGN-E290590+) 1 AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGCTG CTGTAGCGTA TGGTCCAGGG 61 CAGCCGTTGG TGGTAGAACA AGTGCAGGTA GATCCACCTC AGAAAATGGA GGTCCGAATT 121 AAGATTCTCT TTACTTCCAT CTGTCACACG GATCTCAGTG CTTGGAAAGG CGAGAGCGAA 181 GCTCAACGAG CTTATCCTCG AATTCTGGGA CATGAAGCAT CGGGAGTGGT GGAGAGCGTG 241 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAAT Predicted gene structure (within gDNA segment 19662 to 21405): Exon 1 20262 20298 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 20370 20506 ( 137 n); cDNA 38 174 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 20595 20644 ( 50 n); cDNA 175 224 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 20726 20795 ( 70 n); cDNA 225 294 ( 70 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E290590+ 1.000 294 1.000 C PGS_C08HBa0064M21.1+_SGN-E290590+ (20262 20298,20370 20506,20595 20644,20726 20795) Alignment (genomic DNA sequence = upper lines): AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAGGTA ATAAATTTCT TCTTCTTCTT 20321 |||||||||| |||||||||| |||||||||| ||||||| AACATGGCTC CAAAGGGCAA GGTCATCAGT TGCAGAG... .......... .......... 37 CTTGTGAATA ATAATAATAA TAAATTAAAC GTTTTGTTGT TGTTGCAGCT GCTGTAGCGT 20381 || |||||||||| .......... .......... .......... .......... ........CT GCTGTAGCGT 49 ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 20441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAGG GCAGCCGTTG GTGGTAGAAC AAGTGCAGGT AGATCCACCT CAGAAAATGG 109 AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 20501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCCGAAT TAAGATTCTC TTTACTTCCA TCTGTCACAC GGATCTCAGT GCTTGGAAAG 169 GCGAGGTACA ACATATATGT TAAGATTGTG ATGGATCGAT CCATGATATA TGATCTAATT 20561 ||||| GCGAG..... .......... .......... .......... .......... .......... 174 TGATTTTTTA TTTTTTATTT TCATAATATA AAGAGCGAAG CTCAACGAGC TTATCCTCGA 20621 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AGCGAAG CTCAACGAGC TTATCCTCGA 201 ATTCTGGGAC ATGAAGCATC GGGGTAAGTT TAATACTTGT AGAGTAGTTA TTATTAGTAA 20681 |||||||||| |||||||||| ||| ATTCTGGGAC ATGAAGCATC GGG....... .......... .......... .......... 224 TGTAAAGTAA AGTAAATAAG TAATTATTAA GAAACACATT ACAGAGTGGT GGAGAGCGTG 20741 |||||| |||||||||| .......... .......... .......... .......... ....AGTGGT GGAGAGCGTG 240 GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAAT 20795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GGAGAAGGTG TAATTGACAT GAAAGAGGGA GATCAAGTCG TAGCGATTTT CAAT 294 hqPGS_C08HBa0064M21.1+_SGN-E290590+ (20262 20298,20370 20506,20595 20644,20726 20795) ******************************************************************************** EST sequence 34 +strand 584 n (File: SGN-E306038+) 1 CGAGCTTATC CTCGAATTCT GGGACATGAA GCATCGGGAG TGGTGGAGAG CGTGGGAGAA 61 GGTGTAATTG ACATGAAAGA GGGAGATCAA GTCGTAGCGA TTTTCAATGG TGAATGCGGA 121 GAGTGCATAT ATTGCAAATC ATCAAAGAAA ACCAACTTGT GTGGCAAGTT CCGCGTCAAT 181 CCATTCAAAA GTGTGATGGA AAGTGACGGA AAATGCAGGT TCAGGAACAA GGATGGCATA 241 CCCATTTATC ATTTTCTTAG TACTTCAACA TTCACCGAAT ACACTGTTGT TGATTCTGCT 301 TGCTTAGTCA AAATTGACCC TCATGCCTCA CTTGACAAGA TGACCTTGCT TAGCTGCGGC 361 GTATCCACTG GTCTAGGGGC TGCGTGGAAC ACGGCTGACG TTCAAACAGG GGAAACGGTG 421 GCAGTCTTTG GATTAGGAGC TGTTGGTTTG GCCGTTGTTG AAGGGGCACG GACCATAGGC 481 GCCTCAAAGA TCATAGGGGT GGATATTAAC CCTGAAAAAC GTATTAAAGG TGAAGCAATT 541 GGAATTACTG ACTTCATCAA TCCCAAAGAA ATCGATGTGC CCGT Predicted gene structure (within gDNA segment 20007 to 22383): Exon 1 20607 20644 ( 38 n); cDNA 1 38 ( 38 n); score: 1.000 Intron 1 20645 20725 ( 81 n); Pd: 0.997 (s: 0), Pa: 0.986 (s: 1.00) Exon 2 20726 21057 ( 332 n); cDNA 39 370 ( 332 n); score: 1.000 Intron 2 21058 21320 ( 263 n); Pd: 1.000 (s: 1.00), Pa: 0.349 (s: 1.00) Exon 3 21321 21403 ( 83 n); cDNA 371 453 ( 83 n); score: 1.000 Intron 3 21404 21556 ( 153 n); Pd: 0.976 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 4 21557 21632 ( 76 n); cDNA 454 529 ( 76 n); score: 0.987 Intron 4 21633 21718 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 5 21719 21773 ( 55 n); cDNA 530 584 ( 55 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E306038+ 0.998 584 1.000 C PGS_C08HBa0064M21.1+_SGN-E306038+ (20607 20644,20726 21057,21321 21403,21557 21632,21719 21773) Alignment (genomic DNA sequence = upper lines): CGAGCTTATC CTCGAATTCT GGGACATGAA GCATCGGGGT AAGTTTAATA CTTGTAGAGT 20666 |||||||||| |||||||||| |||||||||| |||||||| CGAGCTTATC CTCGAATTCT GGGACATGAA GCATCGGG.. .......... .......... 38 AGTTATTATT AGTAATGTAA AGTAAAGTAA ATAAGTAATT ATTAAGAAAC ACATTACAGA 20726 | .......... .......... .......... .......... .......... .........A 39 GTGGTGGAGA GCGTGGGAGA AGGTGTAATT GACATGAAAG AGGGAGATCA AGTCGTAGCG 20786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGGAGA GCGTGGGAGA AGGTGTAATT GACATGAAAG AGGGAGATCA AGTCGTAGCG 99 ATTTTCAATG GTGAATGCGG AGAGTGCATA TATTGCAAAT CATCAAAGAA AACCAACTTG 20846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCAATG GTGAATGCGG AGAGTGCATA TATTGCAAAT CATCAAAGAA AACCAACTTG 159 TGTGGCAAGT TCCGCGTCAA TCCATTCAAA AGTGTGATGG AAAGTGACGG AAAATGCAGG 20906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGCAAGT TCCGCGTCAA TCCATTCAAA AGTGTGATGG AAAGTGACGG AAAATGCAGG 219 TTCAGGAACA AGGATGGCAT ACCCATTTAT CATTTTCTTA GTACTTCAAC ATTCACCGAA 20966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGGAACA AGGATGGCAT ACCCATTTAT CATTTTCTTA GTACTTCAAC ATTCACCGAA 279 TACACTGTTG TTGATTCTGC TTGCTTAGTC AAAATTGACC CTCATGCCTC ACTTGACAAG 21026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACTGTTG TTGATTCTGC TTGCTTAGTC AAAATTGACC CTCATGCCTC ACTTGACAAG 339 ATGACCTTGC TTAGCTGCGG CGTATCCACT GGTAATTAAT TAATTCTCTT TTCTTTTTTT 21086 |||||||||| |||||||||| |||||||||| | ATGACCTTGC TTAGCTGCGG CGTATCCACT G......... .......... .......... 370 CAACTTTTAC ATAAATTTAT AATCATGAAT ATTTTTAATT AGAACTAGAT CCACACATTA 21146 .......... .......... .......... .......... .......... .......... 370 ATTTTTTCTA ATATTAAAAT ACTTGGATAT GACCGAGACC ACTTTCTAAA ACAAAACAAA 21206 .......... .......... .......... .......... .......... .......... 370 ACAAAAAAAA AAAAAAGCAA TGGAACATGA TATTTATTGA TTAGTGGGTA AGACTTTGTT 21266 .......... .......... .......... .......... .......... .......... 370 TTTTGATTAT AAAGGCAAGT AGGGCATAGG AATTAAATGG GATGGATGAT GCAGGTCTAG 21326 |||||| .......... .......... .......... .......... .......... ....GTCTAG 376 GGGCTGCGTG GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC TTTGGATTAG 21386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGCGTG GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC TTTGGATTAG 436 GAGCTGTTGG TTTGGCCGTA AGCTTTTCTC TAATAAATAA AAACAATTGT TTTGTCTCCA 21446 |||||||||| ||||||| GAGCTGTTGG TTTGGCC... .......... .......... .......... .......... 453 TCAATTAAAT ACCCTCACAT GGATTAGTAC CTTACCCAAT TTATTTTACT TATAATAATA 21506 .......... .......... .......... .......... .......... .......... 453 AAGTCAACAA TATATTTCTG GTCCTAATTA AAAAATTCAA TTTGCTGCAG GTTGTTGAAG 21566 |||||||||| .......... .......... .......... .......... .......... GTTGTTGAAG 463 GGGCACGGAC CAGAGGCGCC TCAAAGATCA TAGGGGTGGA TATTAACCCT GAAAAACGTA 21626 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCACGGAC CATAGGCGCC TCAAAGATCA TAGGGGTGGA TATTAACCCT GAAAAACGTA 523 TTAAAGGTAA ACATAGAATA ATATATGTAA TTTAATTAAG TTACGGATAA TATATATACT 21686 |||||| TTAAAG.... .......... .......... .......... .......... .......... 529 GTTTTTTTTA TATATATATA TATATAATTA AGGTGAAGCA ATTGGAATTA CTGACTTCAT 21746 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTGAAGCA ATTGGAATTA CTGACTTCAT 557 CAATCCCAAA GAAATCGATG TGCCCGT 21773 |||||||||| |||||||||| ||||||| CAATCCCAAA GAAATCGATG TGCCCGT 584 hqPGS_C08HBa0064M21.1+_SGN-E306038+ (20607 20644,20726 21057,21321 21403,21557 21632,21719 21773) ******************************************************************************** EST sequence 36 +strand 430 n (File: SGN-E306039+) 1 GCTTTTCCTC GAATTTTGGG ACATGAAGCA TCGGGAGTGG TGGAGAGCGT GTGAGAAGGT 61 GTAATGGACA TGAAAGAGGG AGATCAAGTC GTAGCGATTT TCAATGGTGA ATGCGGAGAG 121 TGCATATATT GCAAATCATC AAAGAAAACC AACTTGTGTG GCAAGTTCCG CGTCAATCCA 181 TTCAAAAGTG TGATGGAAAG TGACGGAAAA TGCAAGTTCA GGAGCAAGGA TGGCATACCC 241 ATTTATCATT GTCTTAGTAC TTCAACATTC ACCGAATACA CTGTTGTTGA TTCTGCTTGC 301 TGAGTCAAAA TTGACCCTGA TGCCTCACTT GACAAGATGA CCTTGCTTAG CTGCGGCGTA 361 TCCACTGGTC TAGGGGCTGC GTGGAACACG GGTGACGTTC AAACAGGGGA AACGGTGGCA 421 GTCTTTGGAT Predicted gene structure (within gDNA segment 19785 to 21993): Exon 1 20610 20644 ( 35 n); cDNA 1 35 ( 35 n); score: 0.943 Intron 1 20645 20725 ( 81 n); Pd: 0.997 (s: 0), Pa: 0.986 (s: 0.96) Exon 2 20726 21057 ( 332 n); cDNA 36 367 ( 332 n); score: 0.979 Intron 2 21058 21320 ( 263 n); Pd: 1.000 (s: 0.98), Pa: 0.349 (s: 0.98) Exon 3 21321 21383 ( 63 n); cDNA 368 430 ( 63 n); score: 0.984 MATCH C08HBa0064M21.1+ SGN-E306039+ 0.980 430 1.000 C PGS_C08HBa0064M21.1+_SGN-E306039+ (20610 20644,20726 21057,21321 21383) Alignment (genomic DNA sequence = upper lines): GCTTATCCTC GAATTCTGGG ACATGAAGCA TCGGGGTAAG TTTAATACTT GTAGAGTAGT 20669 |||| ||||| ||||| |||| |||||||||| ||||| GCTTTTCCTC GAATTTTGGG ACATGAAGCA TCGGG..... .......... .......... 35 TATTATTAGT AATGTAAAGT AAAGTAAATA AGTAATTATT AAGAAACACA TTACAGAGTG 20729 |||| .......... .......... .......... .......... .......... ......AGTG 39 GTGGAGAGCG TGGGAGAAGG TGTAATTGAC ATGAAAGAGG GAGATCAAGT CGTAGCGATT 20789 |||||||||| || ||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GTGGAGAGCG TGTGAGAAGG TGTAATGGAC ATGAAAGAGG GAGATCAAGT CGTAGCGATT 99 TTCAATGGTG AATGCGGAGA GTGCATATAT TGCAAATCAT CAAAGAAAAC CAACTTGTGT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATGGTG AATGCGGAGA GTGCATATAT TGCAAATCAT CAAAGAAAAC CAACTTGTGT 159 GGCAAGTTCC GCGTCAATCC ATTCAAAAGT GTGATGGAAA GTGACGGAAA ATGCAGGTTC 20909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GGCAAGTTCC GCGTCAATCC ATTCAAAAGT GTGATGGAAA GTGACGGAAA ATGCAAGTTC 219 AGGAACAAGG ATGGCATACC CATTTATCAT TTTCTTAGTA CTTCAACATT CACCGAATAC 20969 |||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGGAGCAAGG ATGGCATACC CATTTATCAT TGTCTTAGTA CTTCAACATT CACCGAATAC 279 ACTGTTGTTG ATTCTGCTTG CTTAGTCAAA ATTGACCCTC ATGCCTCACT TGACAAGATG 21029 |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| ACTGTTGTTG ATTCTGCTTG CTGAGTCAAA ATTGACCCTG ATGCCTCACT TGACAAGATG 339 ACCTTGCTTA GCTGCGGCGT ATCCACTGGT AATTAATTAA TTCTCTTTTC TTTTTTTCAA 21089 |||||||||| |||||||||| |||||||| ACCTTGCTTA GCTGCGGCGT ATCCACTG.. .......... .......... .......... 367 CTTTTACATA AATTTATAAT CATGAATATT TTTAATTAGA ACTAGATCCA CACATTAATT 21149 .......... .......... .......... .......... .......... .......... 367 TTTTCTAATA TTAAAATACT TGGATATGAC CGAGACCACT TTCTAAAACA AAACAAAACA 21209 .......... .......... .......... .......... .......... .......... 367 AAAAAAAAAA AAAGCAATGG AACATGATAT TTATTGATTA GTGGGTAAGA CTTTGTTTTT 21269 .......... .......... .......... .......... .......... .......... 367 TGATTATAAA GGCAAGTAGG GCATAGGAAT TAAATGGGAT GGATGATGCA GGTCTAGGGG 21329 ||||||||| .......... .......... .......... .......... .......... .GTCTAGGGG 376 CTGCGTGGAA CACGGCTGAC GTTCAAACAG GGGAAACGGT GGCAGTCTTT GGAT 21383 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||| CTGCGTGGAA CACGGGTGAC GTTCAAACAG GGGAAACGGT GGCAGTCTTT GGAT 430 hqPGS_C08HBa0064M21.1+_SGN-E306039+ (20610 20644,20726 21057,21321 21383) ******************************************************************************** EST sequence 91 -strand 708 n (File: SGN-E373432-) 1 AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 61 AGGAGCTGTT GGTTTGGCCG TTGTTGAAGG GGCACGGACC AGAGGCGCCT CAAAGATCAT 121 AGGGGTGGAT ATTAACCCTG AAAAACGTAT TAAAGGTGAA GCAATTGGAA TTACTGACTT 181 CATCAATCCC AAAGAAATCG ATGTGCCCGT CCATGAGAAA ATAAGGGAAA TGAGCGAGGG 241 GGGCGTGGAC TATAGCTTTG AGTGTGCTGG AAATATGCAA GTTCTTCGAG AGGCATTTTT 301 ATCCACACAT GATGGATGGG GCATGGCAAT CGTTTTAGGA ATTCATCCGA CACCAAAATT 361 GCTATCACTC CATCCAATGG AACTGTTCGA TGGCAGAAGG ATTGTGGCTT CTGTCTTTGG 421 TGACTTCAAA GGAAAATCCC AACTCCCTTT TTTAGCTGAA CAATGCATGG CTGGGGTGGT 481 CAAATTAGAC GAGTTTATTA CTCACAGACT ACCATTTGAG AAGATCAATG AAGCTTTTCA 541 ACTGCTTCTC GATGGCAAAT CCTTGAGATG CCTTCTTCAT CTTTCCTAAT AGTAACAAAT 601 TTATTAAAGC AATTCCTCCT ATCCTGTATT CTATTATTCT GCACTTTCAA ATATATTGTA 661 TTTACTTTCT ACATGTTTTA TCAATGGAGT AAATTTTATA AAAAAAAA Predicted gene structure (within gDNA segment 20715 to 23160): Exon 1 21325 21403 ( 79 n); cDNA 1 79 ( 79 n); score: 1.000 Intron 1 21404 21556 ( 153 n); Pd: 0.976 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 21557 21632 ( 76 n); cDNA 80 155 ( 76 n); score: 1.000 Intron 2 21633 21718 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 21719 21780 ( 62 n); cDNA 156 217 ( 62 n); score: 1.000 Intron 3 21781 21860 ( 80 n); Pd: 0.956 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 21861 21956 ( 96 n); cDNA 218 313 ( 96 n); score: 1.000 Intron 4 21957 22050 ( 94 n); Pd: 1.000 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 5 22051 22212 ( 162 n); cDNA 314 475 ( 162 n); score: 1.000 Intron 5 22213 22291 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 22292 22520 ( 229 n); cDNA 476 704 ( 229 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E373432- 1.000 704 0.994 C PGS_C08HBa0064M21.1+_SGN-E373432- (21325 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) Alignment (genomic DNA sequence = upper lines): AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 21384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 60 AGGAGCTGTT GGTTTGGCCG TAAGCTTTTC TCTAATAAAT AAAAACAATT GTTTTGTCTC 21444 |||||||||| ||||||||| AGGAGCTGTT GGTTTGGCC. .......... .......... .......... .......... 79 CATCAATTAA ATACCCTCAC ATGGATTAGT ACCTTACCCA ATTTATTTTA CTTATAATAA 21504 .......... .......... .......... .......... .......... .......... 79 TAAAGTCAAC AATATATTTC TGGTCCTAAT TAAAAAATTC AATTTGCTGC AGGTTGTTGA 21564 |||||||| .......... .......... .......... .......... .......... ..GTTGTTGA 87 AGGGGCACGG ACCAGAGGCG CCTCAAAGAT CATAGGGGTG GATATTAACC CTGAAAAACG 21624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGCACGG ACCAGAGGCG CCTCAAAGAT CATAGGGGTG GATATTAACC CTGAAAAACG 147 TATTAAAGGT AAACATAGAA TAATATATGT AATTTAATTA AGTTACGGAT AATATATATA 21684 |||||||| TATTAAAG.. .......... .......... .......... .......... .......... 155 CTGTTTTTTT TATATATATA TATATATAAT TAAGGTGAAG CAATTGGAAT TACTGACTTC 21744 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGAAG CAATTGGAAT TACTGACTTC 181 ATCAATCCCA AAGAAATCGA TGTGCCCGTC CATGAGGTGA GAGAGGAGTG AGTGACTGTT 21804 |||||||||| |||||||||| |||||||||| |||||| ATCAATCCCA AAGAAATCGA TGTGCCCGTC CATGAG.... .......... .......... 217 GATTTCTAAT TTTTTTTTTA CTGCAAGTAA AATAAGGAAT TTGATATTGG GTGCAGAAAA 21864 |||| .......... .......... .......... .......... .......... ......AAAA 221 TAAGGGAAAT GAGCGAGGGG GGCGTGGACT ATAGCTTTGA GTGTGCTGGA AATATGCAAG 21924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGGAAAT GAGCGAGGGG GGCGTGGACT ATAGCTTTGA GTGTGCTGGA AATATGCAAG 281 TTCTTCGAGA GGCATTTTTA TCCACACATG ATGCAAGTTT TTTTTTTCTT TTTTTTTTTG 21984 |||||||||| |||||||||| |||||||||| || TTCTTCGAGA GGCATTTTTA TCCACACATG AT........ .......... .......... 313 TACTATTTAT TTATCTACAG AATTATAGAA GATTTAAAAA GAAACCCCTC TTTCTACTTA 22044 .......... .......... .......... .......... .......... .......... 313 TTATAGGGAT GGGGCATGGC AATCGTTTTA GGAATTCATC CGACACCAAA ATTGCTATCA 22104 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GGAT GGGGCATGGC AATCGTTTTA GGAATTCATC CGACACCAAA ATTGCTATCA 367 CTCCATCCAA TGGAACTGTT CGATGGCAGA AGGATTGTGG CTTCTGTCTT TGGTGACTTC 22164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATCCAA TGGAACTGTT CGATGGCAGA AGGATTGTGG CTTCTGTCTT TGGTGACTTC 427 AAAGGAAAAT CCCAACTCCC TTTTTTAGCT GAACAATGCA TGGCTGGGGT AACTTCATTT 22224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAAGGAAAAT CCCAACTCCC TTTTTTAGCT GAACAATGCA TGGCTGGG.. .......... 475 CTACTTATAA TATATAGTCC ACTTTTTTTT TCTTCTTCTT CTGATGACTT TTCAATTGCA 22284 .......... .......... .......... .......... .......... .......... 475 TGTATAGGTG GTCAAATTAG ACGAGTTTAT TACTCACAGA CTACCATTTG AGAAGATCAA 22344 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG GTCAAATTAG ACGAGTTTAT TACTCACAGA CTACCATTTG AGAAGATCAA 528 TGAAGCTTTT CAACTGCTTC TCGATGGCAA ATCCTTGAGA TGCCTTCTTC ATCTTTCCTA 22404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTTTT CAACTGCTTC TCGATGGCAA ATCCTTGAGA TGCCTTCTTC ATCTTTCCTA 588 ATAGTAACAA ATTTATTAAA GCAATTCCTC CTATCCTGTA TTCTATTATT CTGCACTTTC 22464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTAACAA ATTTATTAAA GCAATTCCTC CTATCCTGTA TTCTATTATT CTGCACTTTC 648 AAATATATTG TATTTACTTT CTACATGTTT TATCAATGGA GTAAATTTTA TAAAAA 22520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAATATATTG TATTTACTTT CTACATGTTT TATCAATGGA GTAAATTTTA TAAAAA 704 hqPGS_C08HBa0064M21.1+_SGN-E373432- (21325 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) ******************************************************************************** EST sequence 100 -strand 814 n (File: SGN-E540404-) 1 AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 61 AGGAGCTGTT GGTTTGGCCG TTGTTGAAGG GGCACGGACC AGAGGCGCCT CAAAGATCAT 121 AGGGGTGGAT ATTAACCCTG AAAAACGTAT TAAAGGTGAA GCAATTGGAA TTACTGACTT 181 CATCAATCCC AAAGAAATCG ATGTGCCCGT CCATGAGAAA ATAAGGGAAA TGAGCGAGGG 241 GGGCGTGGAC TATAGCTTTG AGTGTGCTGG AAATATGCAA GTTCTTCGAG AGGCATTTTT 301 ATCCACACAT GATGCAAGTT TTTTTTTTTC TTTTTTTTTT TGTACTATTT ATTTATCTAC 361 AGAATTATAG AAGATTTAAA AAGAAACCCC TCTTTCTACT TATTATAGGG ATGGGGCATG 421 GCAATCGTTT TAGGAATTCA TCCGACACCA AAATTGCTAT CACTCCATCC AATGGAACTG 481 TTCGATGGCA GAAGGATTGT GGCTTCTGTC TTTGGTGACT TCAAAGGAAA ATCCCAACTC 541 CCTTTTTTAG CTGAACAATG CATGGCTGGG GTGGTCAAAT TAGACGAGTT TATTACTCAC 601 AGACTACCAT TTGAGAAGAT CAATGAAGCT TTTCAACTGC TTCTCGATGG CAAATCCTTG 661 AGATGCCTTC TTCATCTTTC CTAATAGTAA CAAATTTATT AAAGCAATTC CTCCTATCCT 721 GTATTCTATT ATTCTGCACT TTCAAAATAT ATTGTATTTA CTTTCTACAT GTTTTATCAA 781 TGGAGTAAAT TTTATAAAAA AAAAAAAAAA GAAA Predicted gene structure (within gDNA segment 20715 to 23260): Exon 1 21325 21403 ( 79 n); cDNA 1 79 ( 79 n); score: 1.000 Intron 1 21404 21556 ( 153 n); Pd: 0.976 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 21557 21632 ( 76 n); cDNA 80 155 ( 76 n); score: 1.000 Intron 2 21633 21718 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 21719 21780 ( 62 n); cDNA 156 217 ( 62 n); score: 1.000 Intron 3 21781 21860 ( 80 n); Pd: 0.956 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 21861 22212 ( 352 n); cDNA 218 570 ( 353 n); score: 0.993 Intron 4 22213 22291 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 22292 22519 ( 228 n); cDNA 571 799 ( 229 n); score: 0.989 PPA cDNA 800 814 MATCH C08HBa0064M21.1+ SGN-E540404- 0.994 797 0.979 C PGS_C08HBa0064M21.1+_SGN-E540404- (21325 21403,21557 21632,21719 21780,21861 22212,22292 22519) Alignment (genomic DNA sequence = upper lines): AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 21384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGCTGCG TGGAACACGG CTGACGTTCA AACAGGGGAA ACGGTGGCAG TCTTTGGATT 60 AGGAGCTGTT GGTTTGGCCG TAAGCTTTTC TCTAATAAAT AAAAACAATT GTTTTGTCTC 21444 |||||||||| ||||||||| AGGAGCTGTT GGTTTGGCC. .......... .......... .......... .......... 79 CATCAATTAA ATACCCTCAC ATGGATTAGT ACCTTACCCA ATTTATTTTA CTTATAATAA 21504 .......... .......... .......... .......... .......... .......... 79 TAAAGTCAAC AATATATTTC TGGTCCTAAT TAAAAAATTC AATTTGCTGC AGGTTGTTGA 21564 |||||||| .......... .......... .......... .......... .......... ..GTTGTTGA 87 AGGGGCACGG ACCAGAGGCG CCTCAAAGAT CATAGGGGTG GATATTAACC CTGAAAAACG 21624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGCACGG ACCAGAGGCG CCTCAAAGAT CATAGGGGTG GATATTAACC CTGAAAAACG 147 TATTAAAGGT AAACATAGAA TAATATATGT AATTTAATTA AGTTACGGAT AATATATATA 21684 |||||||| TATTAAAG.. .......... .......... .......... .......... .......... 155 CTGTTTTTTT TATATATATA TATATATAAT TAAGGTGAAG CAATTGGAAT TACTGACTTC 21744 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGAAG CAATTGGAAT TACTGACTTC 181 ATCAATCCCA AAGAAATCGA TGTGCCCGTC CATGAGGTGA GAGAGGAGTG AGTGACTGTT 21804 |||||||||| |||||||||| |||||||||| |||||| ATCAATCCCA AAGAAATCGA TGTGCCCGTC CATGAG.... .......... .......... 217 GATTTCTAAT TTTTTTTTTA CTGCAAGTAA AATAAGGAAT TTGATATTGG GTGCAGAAAA 21864 |||| .......... .......... .......... .......... .......... ......AAAA 221 TAAGGGAAAT GAGCGAGGGG GGCGTGGACT ATAGCTTTGA GTGTGCTGGA AATATGCAAG 21924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGGAAAT GAGCGAGGGG GGCGTGGACT ATAGCTTTGA GTGTGCTGGA AATATGCAAG 281 TTCTTCGAGA GGCATTTTTA TCCACACATG ATGCAAG-TT TTTTTTTTCT TTTTTTTTTT 21983 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTCTTCGAGA GGCATTTTTA TCCACACATG ATGCAAGTTT TTTTTTTTCT TTTTTTTTTT 341 GTACTATTTA TTTATCTACA GAATTATAGA AGATTTAAAA AGAAACCCCT CTTTCTACTT 22043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTATTTA TTTATCTACA GAATTATAGA AGATTTAAAA AGAAACCCCT CTTTCTACTT 401 ATTATAGGGA TGGGGCATGG CAATCGTTTT AGGAATTCAT CCGACACCAA AATTGCTATC 22103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAGGGA TGGGGCATGG CAATCGTTTT AGGAATTCAT CCGACACCAA AATTGCTATC 461 ACTCCATCCA ATGGAACTGT TCGATGGCAG AAGGATTGTG GCTTCTGTCT TTGGTGACTT 22163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCATCCA ATGGAACTGT TCGATGGCAG AAGGATTGTG GCTTCTGTCT TTGGTGACTT 521 CAAAGGAAAA TCCCAACTCC CTTTTTTAGC TGAACAATGC ATGGCTGGGG TAACTTCATT 22223 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAAAGGAAAA TCCCAACTCC CTTTTTTAGC TGAACAATGC ATGGCTGGG. .......... 570 TCTACTTATA ATATATAGTC CACTTTTTTT TTCTTCTTCT TCTGATGACT TTTCAATTGC 22283 .......... .......... .......... .......... .......... .......... 570 ATGTATAGGT GGTCAAATTA GACGAGTTTA TTACTCACAG ACTACCATTT GAGAAGATCA 22343 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT GGTCAAATTA GACGAGTTTA TTACTCACAG ACTACCATTT GAGAAGATCA 622 ATGAAGCTTT TCAACTGCTT CTCGATGGCA AATCCTTGAG ATGCCTTCTT CATCTTTCCT 22403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCTTT TCAACTGCTT CTCGATGGCA AATCCTTGAG ATGCCTTCTT CATCTTTCCT 682 AATAGTAACA AATTTATTAA AGCAATTCCT CCTATCCTGT ATTCTATTAT TCTGCACTTT 22463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGTAACA AATTTATTAA AGCAATTCCT CCTATCCTGT ATTCTATTAT TCTGCACTTT 742 C-AAATATAT TGTATTTACT TTCTACATGT TTTATCAATG GAGTAAATTT TATAAAA 22519 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAAAATATAT TGTATTTACT TTCTACATGT TTTATCAATG GAGTAAATTT TATAAAA 799 hqPGS_C08HBa0064M21.1+_SGN-E540404- (21325 21403,21557 21632,21719 21780,21861 22212,22292 22519) ******************************************************************************** EST sequence 92 -strand 696 n (File: SGN-E373344-) 1 GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC TTTGGATTAG GAGCTGTTGG 61 TTTGGCCGTT GTTGAAGGGG CACGGACCAG AGGCGCCTCA AAGATCATAG GGGTGGATAT 121 TAACCCTGAA AAACGTATTA AAGGTGAAGC AATTGGAATT ACTGACTTCA TCAATCCCAA 181 AGAAATCGAT GTGCCCGTCC ATGAGAAAAT AAGGGAAATG AGCGAGGGGG GCGTGGACTA 241 TAGCTTTGAG TGTGCTGGAA ATATGCAAGT TCTTCGAGAG GCATTTTTAT CCACACATGA 301 TGGATGGGGC ATGGCAATCG TTTTAGGAAT TCATCCGACA CCAAAATTGC TATCACTCCA 361 TCCAATGGAA CTGTTCGATG GCAGAAGGAT TGTGGCTTCT GTCTTTGGTG ACTTCAAAGG 421 AAAATCCCAA CTCCCTTTTT TAGCTGAACA ATGCATGGCT GGGGTGGTCA AATTAGACGA 481 GTTTATTACT CACAGACTAC CATTTGAGAA GATCAATGAA GCTTTTCAAC TGCTTCTCGA 541 TGGCAAATCC TTGAGATGCC TTCTTCATCT TTCCTAATAG TAACAAATTT ATTAAAGCAA 601 TTCCTCCTAT CCTGTATTCT ATTATTCTGC ACTTTCAAAT ATATTGTATT TACTTTCTAC 661 ATGTTTTATC AATGGAGTAA ATTTTATAAA AAAAAA Predicted gene structure (within gDNA segment 20727 to 23160): Exon 1 21337 21403 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 21404 21556 ( 153 n); Pd: 0.976 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 21557 21632 ( 76 n); cDNA 68 143 ( 76 n); score: 1.000 Intron 2 21633 21718 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 21719 21780 ( 62 n); cDNA 144 205 ( 62 n); score: 1.000 Intron 3 21781 21860 ( 80 n); Pd: 0.956 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 21861 21956 ( 96 n); cDNA 206 301 ( 96 n); score: 1.000 Intron 4 21957 22050 ( 94 n); Pd: 1.000 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 5 22051 22212 ( 162 n); cDNA 302 463 ( 162 n); score: 1.000 Intron 5 22213 22291 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 22292 22520 ( 229 n); cDNA 464 692 ( 229 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E373344- 1.000 692 0.994 C PGS_C08HBa0064M21.1+_SGN-E373344- (21337 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) Alignment (genomic DNA sequence = upper lines): GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC TTTGGATTAG GAGCTGTTGG 21396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC TTTGGATTAG GAGCTGTTGG 60 TTTGGCCGTA AGCTTTTCTC TAATAAATAA AAACAATTGT TTTGTCTCCA TCAATTAAAT 21456 ||||||| TTTGGCC... .......... .......... .......... .......... .......... 67 ACCCTCACAT GGATTAGTAC CTTACCCAAT TTATTTTACT TATAATAATA AAGTCAACAA 21516 .......... .......... .......... .......... .......... .......... 67 TATATTTCTG GTCCTAATTA AAAAATTCAA TTTGCTGCAG GTTGTTGAAG GGGCACGGAC 21576 |||||||||| |||||||||| .......... .......... .......... .......... GTTGTTGAAG GGGCACGGAC 87 CAGAGGCGCC TCAAAGATCA TAGGGGTGGA TATTAACCCT GAAAAACGTA TTAAAGGTAA 21636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CAGAGGCGCC TCAAAGATCA TAGGGGTGGA TATTAACCCT GAAAAACGTA TTAAAG.... 143 ACATAGAATA ATATATGTAA TTTAATTAAG TTACGGATAA TATATATACT GTTTTTTTTA 21696 .......... .......... .......... .......... .......... .......... 143 TATATATATA TATATAATTA AGGTGAAGCA ATTGGAATTA CTGACTTCAT CAATCCCAAA 21756 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTGAAGCA ATTGGAATTA CTGACTTCAT CAATCCCAAA 181 GAAATCGATG TGCCCGTCCA TGAGGTGAGA GAGGAGTGAG TGACTGTTGA TTTCTAATTT 21816 |||||||||| |||||||||| |||| GAAATCGATG TGCCCGTCCA TGAG...... .......... .......... .......... 205 TTTTTTTACT GCAAGTAAAA TAAGGAATTT GATATTGGGT GCAGAAAATA AGGGAAATGA 21876 |||||| |||||||||| .......... .......... .......... .......... ....AAAATA AGGGAAATGA 221 GCGAGGGGGG CGTGGACTAT AGCTTTGAGT GTGCTGGAAA TATGCAAGTT CTTCGAGAGG 21936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGGGGG CGTGGACTAT AGCTTTGAGT GTGCTGGAAA TATGCAAGTT CTTCGAGAGG 281 CATTTTTATC CACACATGAT GCAAGTTTTT TTTTTCTTTT TTTTTTTGTA CTATTTATTT 21996 |||||||||| |||||||||| CATTTTTATC CACACATGAT .......... .......... .......... .......... 301 ATCTACAGAA TTATAGAAGA TTTAAAAAGA AACCCCTCTT TCTACTTATT ATAGGGATGG 22056 |||||| .......... .......... .......... .......... .......... ....GGATGG 307 GGCATGGCAA TCGTTTTAGG AATTCATCCG ACACCAAAAT TGCTATCACT CCATCCAATG 22116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGCAA TCGTTTTAGG AATTCATCCG ACACCAAAAT TGCTATCACT CCATCCAATG 367 GAACTGTTCG ATGGCAGAAG GATTGTGGCT TCTGTCTTTG GTGACTTCAA AGGAAAATCC 22176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTCG ATGGCAGAAG GATTGTGGCT TCTGTCTTTG GTGACTTCAA AGGAAAATCC 427 CAACTCCCTT TTTTAGCTGA ACAATGCATG GCTGGGGTAA CTTCATTTCT ACTTATAATA 22236 |||||||||| |||||||||| |||||||||| |||||| CAACTCCCTT TTTTAGCTGA ACAATGCATG GCTGGG.... .......... .......... 463 TATAGTCCAC TTTTTTTTTC TTCTTCTTCT GATGACTTTT CAATTGCATG TATAGGTGGT 22296 ||||| .......... .......... .......... .......... .......... .....GTGGT 468 CAAATTAGAC GAGTTTATTA CTCACAGACT ACCATTTGAG AAGATCAATG AAGCTTTTCA 22356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTAGAC GAGTTTATTA CTCACAGACT ACCATTTGAG AAGATCAATG AAGCTTTTCA 528 ACTGCTTCTC GATGGCAAAT CCTTGAGATG CCTTCTTCAT CTTTCCTAAT AGTAACAAAT 22416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCTTCTC GATGGCAAAT CCTTGAGATG CCTTCTTCAT CTTTCCTAAT AGTAACAAAT 588 TTATTAAAGC AATTCCTCCT ATCCTGTATT CTATTATTCT GCACTTTCAA ATATATTGTA 22476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTAAAGC AATTCCTCCT ATCCTGTATT CTATTATTCT GCACTTTCAA ATATATTGTA 648 TTTACTTTCT ACATGTTTTA TCAATGGAGT AAATTTTATA AAAA 22520 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTTACTTTCT ACATGTTTTA TCAATGGAGT AAATTTTATA AAAA 692 hqPGS_C08HBa0064M21.1+_SGN-E373344- (21337 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) ******************************************************************************** EST sequence 46 +strand 612 n (File: SGN-E299398+) 1 TCAAACAGGG GAAACGGTGG CAGTCTTTGT ATTAGGAGCT GTTGGTTTGG CCGTTGTTGA 61 AGGGGCACGG ACCAGAGGCG CCTCAAAGAT CATAGGGGTG GATATTAACC CTGAAAAACG 121 TATTAAAGGT GAAGCAATTG GAATTACTGA CTTCATCAAT CCCAAAGAAA TCGATGTGCC 181 CGTCCATGAG AAAATAAGGG AAATGAGCGA GGGGGGCGTG GACTATAGCT TTGAGTGTGC 241 TGGAAATATG CAAGTTCTTC GAGAGGCATT TTTATCCACA CATGATGGAT GGGGCATGGC 301 AATCGTTTTA GGAATTCATC CGACACCAAA ATTGCTATCA CTCCATCCAA TGGAACTGTT 361 CGATGGCAGA AGGATTGTGG CTTCTGTCTT TGGTGACTTC AAAGGAAAAT CCCAACTCCC 421 TTTTTTAGCT GAACAATGCA TGGCTGGGGT GGTCAAATTA GACGAGTTTA TTACTCACAG 481 ACTACCATTT GAGAAGATCA ATGAAGCTTT TCAACTGCTT CTCGATGGCA AATCCTTGAG 541 ATGCCTTCTT CATCTTTCCT AATAGTAACA AATTTATTAA AGCAATTCCT CCTATCCTGT 601 ATTCTATTAT TC Predicted gene structure (within gDNA segment 20752 to 23065): Exon 1 21352 21403 ( 52 n); cDNA 1 52 ( 52 n); score: 0.981 Intron 1 21404 21556 ( 153 n); Pd: 0.976 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 21557 21632 ( 76 n); cDNA 53 128 ( 76 n); score: 1.000 Intron 2 21633 21718 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 21719 21780 ( 62 n); cDNA 129 190 ( 62 n); score: 1.000 Intron 3 21781 21860 ( 80 n); Pd: 0.956 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 21861 21956 ( 96 n); cDNA 191 286 ( 96 n); score: 1.000 Intron 4 21957 22050 ( 94 n); Pd: 1.000 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 5 22051 22212 ( 162 n); cDNA 287 448 ( 162 n); score: 1.000 Intron 5 22213 22291 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 22292 22455 ( 164 n); cDNA 449 612 ( 164 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E299398+ 0.998 612 1.000 C PGS_C08HBa0064M21.1+_SGN-E299398+ (21352 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22455) Alignment (genomic DNA sequence = upper lines): TCAAACAGGG GAAACGGTGG CAGTCTTTGG ATTAGGAGCT GTTGGTTTGG CCGTAAGCTT 21411 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| || TCAAACAGGG GAAACGGTGG CAGTCTTTGT ATTAGGAGCT GTTGGTTTGG CC........ 52 TTCTCTAATA AATAAAAACA ATTGTTTTGT CTCCATCAAT TAAATACCCT CACATGGATT 21471 .......... .......... .......... .......... .......... .......... 52 AGTACCTTAC CCAATTTATT TTACTTATAA TAATAAAGTC AACAATATAT TTCTGGTCCT 21531 .......... .......... .......... .......... .......... .......... 52 AATTAAAAAA TTCAATTTGC TGCAGGTTGT TGAAGGGGCA CGGACCAGAG GCGCCTCAAA 21591 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTGT TGAAGGGGCA CGGACCAGAG GCGCCTCAAA 87 GATCATAGGG GTGGATATTA ACCCTGAAAA ACGTATTAAA GGTAAACATA GAATAATATA 21651 |||||||||| |||||||||| |||||||||| |||||||||| | GATCATAGGG GTGGATATTA ACCCTGAAAA ACGTATTAAA G......... .......... 128 TGTAATTTAA TTAAGTTACG GATAATATAT ATACTGTTTT TTTTATATAT ATATATATAT 21711 .......... .......... .......... .......... .......... .......... 128 AATTAAGGTG AAGCAATTGG AATTACTGAC TTCATCAATC CCAAAGAAAT CGATGTGCCC 21771 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG AAGCAATTGG AATTACTGAC TTCATCAATC CCAAAGAAAT CGATGTGCCC 181 GTCCATGAGG TGAGAGAGGA GTGAGTGACT GTTGATTTCT AATTTTTTTT TTACTGCAAG 21831 ||||||||| GTCCATGAG. .......... .......... .......... .......... .......... 190 TAAAATAAGG AATTTGATAT TGGGTGCAGA AAATAAGGGA AATGAGCGAG GGGGGCGTGG 21891 | |||||||||| |||||||||| |||||||||| .......... .......... .........A AAATAAGGGA AATGAGCGAG GGGGGCGTGG 221 ACTATAGCTT TGAGTGTGCT GGAAATATGC AAGTTCTTCG AGAGGCATTT TTATCCACAC 21951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATAGCTT TGAGTGTGCT GGAAATATGC AAGTTCTTCG AGAGGCATTT TTATCCACAC 281 ATGATGCAAG TTTTTTTTTT CTTTTTTTTT TTGTACTATT TATTTATCTA CAGAATTATA 22011 ||||| ATGAT..... .......... .......... .......... .......... .......... 286 GAAGATTTAA AAAGAAACCC CTCTTTCTAC TTATTATAGG GATGGGGCAT GGCAATCGTT 22071 | |||||||||| |||||||||| .......... .......... .......... .........G GATGGGGCAT GGCAATCGTT 307 TTAGGAATTC ATCCGACACC AAAATTGCTA TCACTCCATC CAATGGAACT GTTCGATGGC 22131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGAATTC ATCCGACACC AAAATTGCTA TCACTCCATC CAATGGAACT GTTCGATGGC 367 AGAAGGATTG TGGCTTCTGT CTTTGGTGAC TTCAAAGGAA AATCCCAACT CCCTTTTTTA 22191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG TGGCTTCTGT CTTTGGTGAC TTCAAAGGAA AATCCCAACT CCCTTTTTTA 427 GCTGAACAAT GCATGGCTGG GGTAACTTCA TTTCTACTTA TAATATATAG TCCACTTTTT 22251 |||||||||| |||||||||| | GCTGAACAAT GCATGGCTGG G......... .......... .......... .......... 448 TTTTCTTCTT CTTCTGATGA CTTTTCAATT GCATGTATAG GTGGTCAAAT TAGACGAGTT 22311 |||||||||| |||||||||| .......... .......... .......... .......... GTGGTCAAAT TAGACGAGTT 468 TATTACTCAC AGACTACCAT TTGAGAAGAT CAATGAAGCT TTTCAACTGC TTCTCGATGG 22371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTACTCAC AGACTACCAT TTGAGAAGAT CAATGAAGCT TTTCAACTGC TTCTCGATGG 528 CAAATCCTTG AGATGCCTTC TTCATCTTTC CTAATAGTAA CAAATTTATT AAAGCAATTC 22431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCCTTG AGATGCCTTC TTCATCTTTC CTAATAGTAA CAAATTTATT AAAGCAATTC 588 CTCCTATCCT GTATTCTATT ATTC 22455 |||||||||| |||||||||| |||| CTCCTATCCT GTATTCTATT ATTC 612 hqPGS_C08HBa0064M21.1+_SGN-E299398+ (21352 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22455) ******************************************************************************** EST sequence 74 +strand 242 n (File: SGN-E312092+) 1 AGACTTTGTT TTTTGATTAT AAAGGCAAGT AGGGCATAGG AATTAAATGG GATGGATGAT 61 GCAGGTCTAG GGGCTGCGTG GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC 121 TTTGGATTAG GAGCTGTTGG TTTGGCCGTA AGCTTTTCTC TAATAAATAA AAACAATTGT 181 TTTGTCTCCA TCAGTTAAAT ACCCTCACAT GGATTAGTAC CTTACCCAAT TTATTTTACT 241 TA Predicted gene structure (within gDNA segment 20657 to 22108): Exon 1 21257 21498 ( 242 n); cDNA 1 242 ( 242 n); score: 0.996 MATCH C08HBa0064M21.1+ SGN-E312092+ 0.996 242 1.000 C PGS_C08HBa0064M21.1+_SGN-E312092+ (21257 21498) Alignment (genomic DNA sequence = upper lines): AGACTTTGTT TTTTGATTAT AAAGGCAAGT AGGGCATAGG AATTAAATGG GATGGATGAT 21316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTTGTT TTTTGATTAT AAAGGCAAGT AGGGCATAGG AATTAAATGG GATGGATGAT 60 GCAGGTCTAG GGGCTGCGTG GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC 21376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGGTCTAG GGGCTGCGTG GAACACGGCT GACGTTCAAA CAGGGGAAAC GGTGGCAGTC 120 TTTGGATTAG GAGCTGTTGG TTTGGCCGTA AGCTTTTCTC TAATAAATAA AAACAATTGT 21436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGATTAG GAGCTGTTGG TTTGGCCGTA AGCTTTTCTC TAATAAATAA AAACAATTGT 180 TTTGTCTCCA TCAATTAAAT ACCCTCACAT GGATTAGTAC CTTACCCAAT TTATTTTACT 21496 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTCTCCA TCAGTTAAAT ACCCTCACAT GGATTAGTAC CTTACCCAAT TTATTTTACT 240 TA 21498 || TA 242 hqPGS_C08HBa0064M21.1+_SGN-E312092+ (21257 21498) ******************************************************************************** EST sequence 125 -strand 249 n (File: SGN-E398252-) 1 CAATGCATGG GTGGGGTGGT CAAATTAGAC GAGTTTATTA CTCACAGACT ACCATTTGAG 61 AAGATCAATG AAGCTTTTCA ACTGCTTCTC GATGGCAAAT CCTTGAGATG CCTTCTTCAT 121 CTTTCCTAAT AGTAACAAAT TTATTAAAGC AATTCCTCCT ATCCTGTATT CTATTATTCT 181 GCACTTTCAA ATATCTTGTA TTTACTTTCT ACATGTTTTA TCAATGGAGT AAATTTTATA 241 AAAAAAAAA Predicted gene structure (within gDNA segment 21541 to 23170): Exon 1 22198 22212 ( 15 n); cDNA 1 15 ( 15 n); score: 0.933 Intron 1 22213 22291 ( 79 n); Pd: 0.998 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 22292 22520 ( 229 n); cDNA 16 244 ( 229 n); score: 0.996 MATCH C08HBa0064M21.1+ SGN-E398252- 0.996 244 0.980 C PGS_C08HBa0064M21.1+_SGN-E398252- (22198 22212,22292 22520) Alignment (genomic DNA sequence = upper lines): CAATGCATGG CTGGGGTAAC TTCATTTCTA CTTATAATAT ATAGTCCACT TTTTTTTTCT 22257 |||||||||| |||| CAATGCATGG GTGGG..... .......... .......... .......... .......... 15 TCTTCTTCTG ATGACTTTTC AATTGCATGT ATAGGTGGTC AAATTAGACG AGTTTATTAC 22317 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGGTC AAATTAGACG AGTTTATTAC 41 TCACAGACTA CCATTTGAGA AGATCAATGA AGCTTTTCAA CTGCTTCTCG ATGGCAAATC 22377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAGACTA CCATTTGAGA AGATCAATGA AGCTTTTCAA CTGCTTCTCG ATGGCAAATC 101 CTTGAGATGC CTTCTTCATC TTTCCTAATA GTAACAAATT TATTAAAGCA ATTCCTCCTA 22437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAGATGC CTTCTTCATC TTTCCTAATA GTAACAAATT TATTAAAGCA ATTCCTCCTA 161 TCCTGTATTC TATTATTCTG CACTTTCAAA TATATTGTAT TTACTTTCTA CATGTTTTAT 22497 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TCCTGTATTC TATTATTCTG CACTTTCAAA TATCTTGTAT TTACTTTCTA CATGTTTTAT 221 CAATGGAGTA AATTTTATAA AAA 22520 |||||||||| |||||||||| ||| CAATGGAGTA AATTTTATAA AAA 244 hqPGS_C08HBa0064M21.1+_SGN-E398252- (22198 22212,22292 22520) ******************************************************************************** EST sequence 3 -strand 654 n (File: SGN-E547448-) 1 GTAGAATAAA ATAGCCCAAA GTCATATGCG CCCACTCAAA CTTGTCCCGA TTATTCATTT 61 AGACACCTCA ACTAGACGTA CTACCTATTG AACACTTCAA CCATTCTGAA TTTGAATCAT 121 TTGAACATTT TTTCGAGAAT AAACAAAAAA TAGAGAATGT GTGAAATACA CTCGCGCTGA 181 CATGTCAATT TGACCAATCA AATAATGACA TGTGTTATTT TTTAATCCAA AAAATTATTT 241 AAACATTATA TTATAAAGTA AAAAAAATAA AAATTATTTT AAAGTAAAAA AAATTTAAAA 301 AAAAAGTAAA ACCTAAACAC CTCCCTGCCT TCAACTGGAA CAAAACATAC ATTTTCTTTA 361 ACTCCATTAA TGGCGACCCC CCCTCCCTGT ACAGTTCTAT CTTTAACCCT ACAAATTTTT 421 TTTTCATCAG CTTTTATTAA TTATAACTTT TTACTTCATC TCGTTTTTTA GGTAGAGAAA 481 GATGGGGAAA AGAATCTCTT CGAAAAATTT ATAAATGAAA CAAAATGCTA AGAATTTTGA 541 AACCATTAGA ATGGTGGGGG AAGAAGATAA CCACTGATAC TAAGAATTTT GAAATCATTA 601 GAATGATGGG GAAGAAGATA ACCACTGGTG TATGGGGATA GGGGTTGGGG TGGG Predicted gene structure (within gDNA segment 27143 to 24547): Exon 1 26239 25587 ( 653 n); cDNA 16 654 ( 639 n); score: 0.913 MATCH C08HBa0064M21.1- SGN-E547448- 0.913 653 0.998 C PGS_C08HBa0064M21.1-_SGN-E547448- (26239 25587) Alignment (genomic DNA sequence = upper lines): CCAAAGTCAT ATGCGGCCAC TCAAACTTGT CCCGATTATT CATTTAGACA CCTCAACTAG 26180 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAGTCAT ATGCGCCCAC TCAAACTTGT CCCGATTATT CATTTAGACA CCTCAACTAG 75 ACGTACTACC TATTGAACAC TTCAACCATT CTGAATTTGA ACCATTTGAA CATTTTTTCG 26120 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ACGTACTACC TATTGAACAC TTCAACCATT CTGAATTTGA ATCATTTGAA CATTTTTTCG 135 AGAATAAACA AAAAA-AGAG GGTGTGTGAA ATACACTCGC GCTGACATGT CAATTTGACC 26061 |||||||||| ||||| |||| |||||||| |||||||||| |||||||||| |||||||||| AGAATAAACA AAAAATAGAG AATGTGTGAA ATACACTCGC GCTGACATGT CAATTTGACC 195 AATTAAATAA TGACATGTGT TATTTTTTAA TCCAAAAAAT TATTTAAACA TTATATTATA 26001 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAAATAA TGACATGTGT TATTTTTTAA TCCAAAAAAT TATTTAAACA TTATATTATA 255 AAGTAAAAAA ATTTAAGAAA TTATTTTAAA GTAAAAAAAA -TGAAAAAAA AAACAAAACT 25942 |||||||||| | ||| ||| |||||||||| |||||||||| | ||||||| || ||||| AAGTAAAAAA A-ATAA-AAA TTATTTTAAA GTAAAAAAAA TTTAAAAAAA AAGTAAAACC 313 TAAACACCAC TTCCCTGCCC CTTCAACCGG AACAAAAAAT ACATTTCCTC TAACTCCATT 25882 |||||| | | |||||| | ||||||| || ||||||| || |||||| || |||||||||| TAAACA-C-C -TCCCTG--C CTTCAACTGG AACAAAACAT ACATTTTCTT TAACTCCATT 368 AATGGTGACC CTCCCCTCCC CTCCTTGTAC AGTTCCATCT TTAACCCAAC -AATTTTTTT 25823 ||||| |||| | ||||| | || ||||| ||||| |||| ||||||| || ||||||||| AATGGCGACC C-CCCCT--- C-CC-TGTAC AGTTCTATCT TTAACCCTAC AAATTTTTTT 422 TTCATCAGTT TTTTTATTAA TTATAACTTT TTATTTCATC TCGTTTTTTA GGTAGAGAAA 25763 |||||||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TTCATCAG-- CTTTTATTAA TTATAACTTT TTACTTCATC TCGTTTTTTA GGTAGAGAAA 480 GATGGGCAAA AAAATCTCTC CGAAAAAATT TATAAATGAA ACAAAATGTT AAGAATTTTA 25703 |||||| ||| | ||||||| || ||||||| |||||||||| |||||||| | ||||||||| GATGGGGAAA AGAATCTCTT CG-AAAAATT TATAAATGAA ACAAAATGCT AAGAATTTTG 539 AAACCATTAG AATGGTGGGG GAAGAAGATA AACACTAAGA CTAAGAATTT TGAAATCATT 25643 |||||||||| |||||||||| |||||||||| | |||| | | |||||||||| |||||||||| AAACCATTAG AATGGTGGGG GAAGAAGATA ACCACTGATA CTAAGAATTT TGAAATCATT 599 AGAATGGTGG GGGAAGAAGA TAACCATTGG TGTATGGGTA TGGGGGTTGG GTTGGG 25587 |||||| | | |||||||||| |||||| ||| |||||||| | | |||||||| | |||| AGAATGAT-G GGGAAGAAGA TAACCACTGG TGTATGGGGA TAGGGGTTGG GGTGGG 654 hqPGS_C08HBa0064M21.1-_SGN-E547448- (26239 25587) ******************************************************************************** EST sequence 50 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 26967 to 32402): Exon 1 27710 28076 ( 367 n); cDNA 1 365 ( 365 n); score: 0.879 Intron 1 28077 28124 ( 48 n); Pd: 0.000 (s: 0.83), Pa: 0.888 (s: 0) Exon 2 28125 28157 ( 33 n); cDNA 366 397 ( 32 n); score: 0.697 Intron 2 28158 28231 ( 74 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 3 28232 28287 ( 56 n); cDNA 398 452 ( 55 n); score: 0.714 Intron 3 28288 29043 ( 756 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0) Exon 4 29044 29057 ( 14 n); cDNA 453 466 ( 14 n); score: 0.643 Intron 4 29058 29628 ( 571 n); Pd: 0.990 (s: 0), Pa: 0.891 (s: 0) Exon 5 29629 29667 ( 39 n); cDNA 467 503 ( 37 n); score: 0.564 Intron 5 29668 30747 (1080 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 6 30748 30760 ( 13 n); cDNA 504 516 ( 13 n); score: 0.692 Intron 6 30761 31191 ( 431 n); Pd: 0.000 (s: 0), Pa: 0.189 (s: 0) Exon 7 31192 31211 ( 20 n); cDNA 517 535 ( 19 n); score: 0.800 MATCH C08HBa0064M21.1+ SGN-E542827+ 0.857 542 0.869 C PGS_C08HBa0064M21.1+_SGN-E542827+ (27710 28076,28125 28157,28232 28287,29044 29057,29629 29667,30748 30760,31192 31211) Alignment (genomic DNA sequence = upper lines): TTGACTTTTT CTTTGTTTTA ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 27769 || |||||| |||| | || |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTTTT TTTTGGT-TA ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 59 TTATGTTACA CTAATATTCT TGTAAAACTT ATTATAGATG ACCAATTTTT TTCTTCGAAT 27829 |||| || || |||||||||| |||||||||| ||| |||||| ||||| ||| ||||| |||| TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAC ACAAAAAAAA AATAGTTTGA ATTTTTTTC- CTTTAAACTA 27888 || ||||||| |||||||||| ||| |||||| |||||||| |||||||| |||||||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTTTTTCT CTTTAAACTA 179 AGGAATGAAA GAAAAAACAA AATAAGAATA AAAAACTCAA ATAATTATAA TAAAAGAAGT 27948 |||||||||| | |||| || ||| |||||| | |||||||| |||||||||| |||||||||| AGGAATGAAA G--AAAA-AA AATTAGAATA ACAAACTCAA ATAATTATAA TAAAAGAAGT 236 CAAAAATTAA TTTATATATG AAAAAAATTA AA-ATATACC TTGAACTATG ATAGAAGAAT 28007 |||| | ||| ||||| ||| |||||||||| || ||| ||| | ||||| || |||||||||| CAAACAATAA TTTATGTATA AAAAAAATTA AATATA-ACC TCGAACTTTG ATAGAAGAAT 295 CATATATACC CCTAAATAAT TTTTTTTAAA A-AATTAGAA GTAACAAATA TAAATTTAAA 28066 ||||||||| |||||||| |||||| ||| | ||| | || |||| ||||| |||||||||| AATATATACC TTTAAATAAT TTTTTTAAAA ACAATCAAAA GTAATAAATA TAAATTTAAA 355 ACTGATTTTT TAATTTCCGT TAAATGAAAG GTATATGTAA GCCATTTTGT AACGGCAGTG 28126 | | |||||| | ATTAATTTTT .......... .......... .......... .......... ........TA 367 GTATATGTGA GCCGTTTGTA TAACGATAAG GGCATATATG TGCCACTTTT ATAATAAGGG 28186 ||||| | | ||| ||| | |||||| | | ATATATATTA GCCATTT-TG TAACGACAGT G......... .......... .......... 397 GTATATCAGC TCTAAATGCC ACTTTTATAA TAAGGGGTAT ATCAGCTCTA AATGACAAAG 28246 || | ||||||||| .......... .......... .......... .......... .....CTGCA AATGACAAAA 412 TTGAGGGGTA TATCAGACCC TTTTCCCTTT ATTAAAAATA CATTCAAATT CAAAAGCACT 28306 ||||| || ||||| | | |||||| | | || | | | | TTGAGAAATA TATCA-AACT TTTTCCGTAA AATAGATAAA C......... .......... 452 CGAACTAGAA AGCCAAATAG TTATACTGAC AATTTGAAAT CGAGCCTTCA AAGTTTGCAT 28366 .......... .......... .......... .......... .......... .......... 452 TTGATCCCCT ATCGGAATAG CACCAAGACA CTTTCCTTTT ATTTTTTTAA AAGTGCTTAA 28426 .......... .......... .......... .......... .......... .......... 452 AAATAAAATT AAGACTTCAT TGCATTGAGA ATGTTAATTA GACTATTATT ATTTTATTTA 28486 .......... .......... .......... .......... .......... .......... 452 TATACTAATT TCTATTATTT TAAAATTAAA AAAAAAGTCC AAATCATCAA TTTTGTAATG 28546 .......... .......... .......... .......... .......... .......... 452 ATTATTACTT TAAATGAAAT TTAAATTTAA GACATTGCAT TTTATTAAAT TTATTTGTTC 28606 .......... .......... .......... .......... .......... .......... 452 AATAATTTAA ACATGAAATG TCTAAGAAGA CATTAATGTT GGAAAGTTAA TATAAGTAAA 28666 .......... .......... .......... .......... .......... .......... 452 TTAGACAGAT AAAAAAATAA TTGCAAATTT ATGGAGTGAG TATGTACTAC TTTAAATCAT 28726 .......... .......... .......... .......... .......... .......... 452 ACAGTAATAT ATTTTTAAAG AGTAATAAAA TTTTAATAAA GTATATTCAG CAAGGGTATT 28786 .......... .......... .......... .......... .......... .......... 452 CTGGTCTTTA CAAGCGGTGG CGTTTATTCT GCTTTGGGTG CTTCTCACAT TGGAACGCCA 28846 .......... .......... .......... .......... .......... .......... 452 TTAACATGGG ATTCGTCAGA TTTGTTGAGC TCTCTTGTTT ATCTCTTTCT CATGTATGTA 28906 .......... .......... .......... .......... .......... .......... 452 TAAATGGATT TCCTTCATCT TTATACTCGG TCCTTGCTAT GCTTTTGGGT GTGATTTCGA 28966 .......... .......... .......... .......... .......... .......... 452 CTTGTGCTTC TTCGTTTAAT CGAATTTATT TGTTTTCTGT GCTTCGGATT TGTATATATA 29026 .......... .......... .......... .......... .......... .......... 452 TGCGCCTTTG ATTCTCATTC ATTCATGATA TATATCCTTG CGTTTTTTTT TAAAACTGAA 29086 || | | |||| | .......... .......TTA AAAGAGGATA T......... .......... .......... 466 TTTGAATTTG GGGCTTTTTG CTTCTTTCGT AGATTTGTAA TTGTTGTTTT AGGCCTAAAG 29146 .......... .......... .......... .......... .......... .......... 466 CCACTGCTTG CTTAGGGTTG AGCCAACCTT GCAACCATGA AGAGCCGGTC TCACCGGCTT 29206 .......... .......... .......... .......... .......... .......... 466 CCTGTTGCGA ACCCACAGGA TGACTGGATT GATGGTTCAT GGACAGTGGA TTGTGTGTGT 29266 .......... .......... .......... .......... .......... .......... 466 GGTGTCAATT TTGATGATGG AGAGGAAATG GTGAATTGCG ACGAGTGCAG TGTGTGGGTA 29326 .......... .......... .......... .......... .......... .......... 466 CATACACGTT GTGTGCGGTA TGTCAAGAGT GAGAAATTAT TTGCATGTGA TAAGTGTAAG 29386 .......... .......... .......... .......... .......... .......... 466 AATAAAGCCA CCACAAATAA TAGCGAAGAA ACTGAGGTTG CTCAGCTGCT TGTTGAGTTG 29446 .......... .......... .......... .......... .......... .......... 466 CCCACCAAGA CTTTGACCAT GAATTCTCCA TATCCTAATA CTCTCCCTAT CCGTAGCCCC 29506 .......... .......... .......... .......... .......... .......... 466 TTTAGACTTT GGACTGATTT GCCAGTGGAA GAAAGGGTTC ACATGCAAGG TGTCCCTGGT 29566 .......... .......... .......... .......... .......... .......... 466 GGTGATCCAG CTTTGTTTTC TGGGTTATCA TCTGTATTTG GTCGTGAATT GTGGAAATGC 29626 .......... .......... .......... .......... .......... .......... 466 AGGGGTTATG TTCCCAAAAT GTTTAATTTT AAATATAGCG AATTTCCTTG TTGGGATAAT 29686 || | | |||||| || || | ||||| | | ..TTGTAAAC AACACAAAAT CTTCAA--TC AAATACAAAG T......... .......... 503 GAAACAAGGG ACGCCCATGA TAATACCAGT GACAAAGGCA ATGAGATGAT TAATGGTAAT 29746 .......... .......... .......... .......... .......... .......... 503 GGTGCTGGTG CTTTATTCTC ATCGTCAAAG GAAAACTGCT TGTTTGCACA TGTGGTTAAC 29806 .......... .......... .......... .......... .......... .......... 503 CCTGTTTCTG AGAAGCATGT TCTTGAGTCC CAAAATGCTA TGGATTCAGA TGCTACTACT 29866 .......... .......... .......... .......... .......... .......... 503 CGCTCAACCA ATGATATGAA GGACACAGGT TTATTGGGTT CTAGCATGAT ACAAGGCAAC 29926 .......... .......... .......... .......... .......... .......... 503 AAGGGTACCA AAGAAGACTG TGGGATATCC AATGATCAAA GTGGTAAGAA GAAGTCTAAG 29986 .......... .......... .......... .......... .......... .......... 503 ATCCTTGAAA AGGAAGACTA TCTTAAGAAA GATGCACATG CTTCTAGACC AGGTGATTAA 30046 .......... .......... .......... .......... .......... .......... 503 GCTACTACCC TTTTGTTAAA AGGAACTAAT TTTTGCATGT CTAATGCTTT CTTGACATTC 30106 .......... .......... .......... .......... .......... .......... 503 AAATTTGGTT TGTGTTACTG ATGCTTTATC TACTATTTGA ATTGTTACTA GCACTACCAT 30166 .......... .......... .......... .......... .......... .......... 503 GATTGTTGAT AATGGTACTA GTATTCCTTT TCAAGTTATG AGGGAATTGA CTCAAAGCAA 30226 .......... .......... .......... .......... .......... .......... 503 TTGCAATTTT TTTAAAGACA GAAGCCCCAT GTCTGTCAAG ACAGATATTC AGAGAACAAA 30286 .......... .......... .......... .......... .......... .......... 503 ATTTGGAAAT TCAGGGGAAG TTTTGGCTGC TGTTGACCAT TTGGAAGGAC CTGGTGTACT 30346 .......... .......... .......... .......... .......... .......... 503 GGACCATGAC AATACAAGCT ATTCTGACAT TCCAACTTCA AATGAGCGCT ATTCAAAAGC 30406 .......... .......... .......... .......... .......... .......... 503 TGCATCTTAT GATGTATCTA AACGCTGCTC AACAAGTGAA GCACATCCCC GAGAAGACAA 30466 .......... .......... .......... .......... .......... .......... 503 GATTAGAAAC CACATTTCTG CTAGGATTGA GGATTCTCCC ATGGAGAATG ATGGAGCAAC 30526 .......... .......... .......... .......... .......... .......... 503 ATCAAATTTA GAGCGGAGTG ACTCTGCTAG TTTACCTATG ACAGAAGAGG TAAGTGATCG 30586 .......... .......... .......... .......... .......... .......... 503 GTTTTCATGC TATAGTTTCC TGTGACTGTG GTGACTTCTC TTTGTTTCAT TTCTCACAGA 30646 .......... .......... .......... .......... .......... .......... 503 TTGCCAAATT TATGACCAAT TATGTCCAGT TCTGCATTTA TTAAGTGGTA GAGTAACTTT 30706 .......... .......... .......... .......... .......... .......... 503 ATGTACTATT AAGTATTATC CTTTTTTATA CTTCAACTTT GTAAAACAGT AGGGGCTGGA 30766 | ||||| | || .......... .......... .......... .......... .TCAAACACT AGCA...... 516 AGACCAAAAC TTTATAGGAG GGTCGAGATC GTCTATTCCA GTGTTATTTA CTCTTTCCCT 30826 .......... .......... .......... .......... .......... .......... 516 TCCCTTCGTT AGAGAGGTAA AATGGATGGG CATATTTGGA ATAGAAGCCA GGCGCTTTAA 30886 .......... .......... .......... .......... .......... .......... 516 CCTCGATGGA TTTACGAATA TTCCTATTAG AAAATGAAGA GGAGATGAAA TCTCTCTTAT 30946 .......... .......... .......... .......... .......... .......... 516 TATGGTATTA GCCAATGTCA CCAAAGCTTT CCAACATTCA AAGCTAGTGA ACCTTCTCTG 31006 .......... .......... .......... .......... .......... .......... 516 GTGCTCTAAA TATTCTAGCC ACTGTTATTT TTGCATCAGT TCCTTCTGCT TTGGAAAAAA 31066 .......... .......... .......... .......... .......... .......... 516 TTCACACTTA GTGAGGAAGT ACCTTGAGGG TAACCATGCA ATTATTCAGA TTGCCATAAC 31126 .......... .......... .......... .......... .......... .......... 516 TCATCTCCTT GATGAGATCG GAGTTGAATT ACAGTTACAT ATTTCATGTT TTGTGTTGGT 31186 .......... .......... .......... .......... .......... .......... 516 GTAAGGTTAA CCATATCTAT AGAAA 31211 || || ||| ||| || |||| .....GTGAA CCAAATC-AT CGAAA 535 hqPGS_C08HBa0064M21.1+_SGN-E542827+ (27710 28076,28125 28157,28232 28287) ******************************************************************************** EST sequence 44 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 27144 to 29074): Exon 1 27798 28184 ( 387 n); cDNA 1 387 ( 387 n); score: 0.908 Intron 1 28185 28220 ( 36 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 28221 28274 ( 54 n); cDNA 388 441 ( 54 n); score: 0.963 MATCH C08HBa0064M21.1+ SGN-E243215+ 0.915 441 0.959 C PGS_C08HBa0064M21.1+_SGN-E243215+ (27798 28184,28221 28274) Alignment (genomic DNA sequence = upper lines): TTATTATAGA TGACCAATTT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACAAAAAA 27857 ||||| |||| ||||||| || |||||||||| |||||||||| |||||||||| ||||| |||| TTATTGTAGA TGACCAA-TT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT GAATTTTTTT CCTTTAAACT AAGGAATGAA AG-AAAAAAC AAAATAAGAA 27916 |||||| ||| |||||||||| |||||||| |||||||||| || ||||||| |||||||||| AAAATA-TTT GAATTTTTTT TATTTAAACT AAGGAATGAA AGAAAAAAAC AAAATAAGAA 118 TAAAAAACTC AAATAATTAT AATAAAAGAA GTCAAAAATT AATTTATATA TGAAAAAAAT 27976 ||| |||||| |||| ||||| |||||||||| |||||||| | ||||| | || || ||||||| TAAGAAACTC AAATTATTAT AATAAAAGAA GTCAAAAAAT AATTTTTGTA TG-AAAAAAT 177 TAAAATATAC CTTGAACTAT GATAGAAGAA TCATATATAC CCCTAAATAA TTTTTTT--T 28034 |||||||||| |||||||| | |||||||||| ||||||||| ||||||||| ||||||| TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAT CCCTAAATAT TTTTTTTAAA 237 AAAAAATTAG AAGTAACAAA TATAAATTTA AAACTGATTT TTTAATTTCC GTTAAATGAA 28094 |||||||||| |||||||||| |||||||||| ||||| |||| ||||| || | |||||||||| AAAAAATTAG AAGTAACAAA TATAAATTTA AAACTAATTT TTTAACTTTC GTTAAATGAA 297 AGGTATATGT AAGCCATTTT GTAACGGCAG TGGTATATGT GAGCCGTTTG TATAACGATA 28154 ||||||||| ||||||||| ||||||||| ||||||||| |||||||||| |||||||||| GGGTATATGT GAGCCATTTT CTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGATA 357 AGGGCATATA TGTGCCACTT TTATAATAAG GGGTATATCA GCTCTAAATG CCACTTTTAT 28214 |||||||||| || |||||| |||| | || AGGGCATATA TGAACCACTT TTATTACGAG .......... .......... .......... 387 AATAAGGGGT ATATCAGCTC TAAATGACAA AGTTGAGGGG TATATCAGAC CCTTTTCCCT 28274 || | |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ......GGAT ATATCAGCTC TAAATGACAA AGTTGAGAGG TATATCAGAC CCTTTTCCCT 441 hqPGS_C08HBa0064M21.1+_SGN-E243215+ (27798 28184,28221 28274) ******************************************************************************** EST sequence 109 +strand 696 n (File: SGN-E376578+) 1 TTTTAGTTTG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTC CAAGTGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA GAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATTTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTTTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCCTTTTG ATTTCTGCTT 541 TCTTTTGACA AGTAAAAGAA TTTCATTACA TTGGCTACAT TAGCACCAAG TACCTCTTCA 601 AAGTGGATAC AAAATACACC AGCTCCCTAT ACTTCCTGCA AGGAGCTAAA GAGTACAAAT 661 TAATTAGGGA TAATACATAT ATTGGACCCT AAACTT Predicted gene structure (within gDNA segment 34533 to 27211): Exon 1 33213 33081 ( 133 n); cDNA 73 205 ( 133 n); score: 0.853 MATCH C08HBa0064M21.1- SGN-E376578+ 0.853 133 0.191 C PGS_C08HBa0064M21.1-_SGN-E376578+ (33213 33081) Alignment (genomic DNA sequence = upper lines): ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACAA GATTAAAAAG TTTCTTTCTT 33154 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | | ||||| ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACAA AATTAAAAAG TCTTCTTCTT 132 TTCTTAAACT CC-TTCCAAG TCAAACTAGG TCATCCTTTT TGAAACGGAG GAAGTATATA 33095 |||||||||| || ||||||| |||||||||| |||| ||||| | ||| | || | |||| || TTCTTAAACT CCGTTCCAAG TCAAACTAGG TCATTCTTTT TTAAATGAAG GGAGTA-CTA 191 TTAATTAATT ATAG 33081 || || | ||| TTTTGGAAAT TTAG 205 hqPGS_C08HBa0064M21.1-_SGN-E376578+ (33213 33081) ******************************************************************************** EST sequence 118 +strand 429 n (File: SGN-E393272+) 1 TTTTTAGTTT GTTTAAAAAT GAATGACTCC TTTCATTTTG TTTTAACTTT CCAAGTGACA 61 TGTTTAAGAC GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA 121 AAGTCTTCTT CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG 181 AAGGGAGTAC TATTTTGGAA ATTTAGAGTT GGTTTTGTTT TCTCAATGAG ATGGTGAAAG 241 TGTACACCAT AGAATTATGA GATCTTTTTT TCTTGTCCAA CTTGAAATGG TTGCCGAATC 301 ATTATCTTGG TATTATGCTG GGGAAGCTTT TCAGAATTTT CACCTTAGTG TATTCTAATA 361 TTTCTAATAT ATCTAGTTGT ACGAAAGATC TTGCATCCTA TAGTGATGCT TACCTTTTTT 421 ACAATATTC Predicted gene structure (within gDNA segment 34543 to 29891): Exon 1 33213 33081 ( 133 n); cDNA 74 206 ( 133 n); score: 0.853 MATCH C08HBa0064M21.1- SGN-E393272+ 0.853 133 0.310 C PGS_C08HBa0064M21.1-_SGN-E393272+ (33213 33081) Alignment (genomic DNA sequence = upper lines): ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACAA GATTAAAAAG TTTCTTTCTT 33154 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | | ||||| ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACAA AATTAAAAAG TCTTCTTCTT 133 TTCTTAAACT CC-TTCCAAG TCAAACTAGG TCATCCTTTT TGAAACGGAG GAAGTATATA 33095 |||||||||| || ||||||| |||||||||| |||| ||||| | ||| | || | |||| || TTCTTAAACT CCGTTCCAAG TCAAACTAGG TCATTCTTTT TTAAATGAAG GGAGTA-CTA 192 TTAATTAATT ATAG 33081 || || | ||| TTTTGGAAAT TTAG 206 hqPGS_C08HBa0064M21.1-_SGN-E393272+ (33213 33081) ******************************************************************************** EST sequence 130 +strand 525 n (File: SGN-E210228+) 1 TTTTAGTTCG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTG CAAGGGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC CCAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA CAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATCTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTGTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCC Predicted gene structure (within gDNA segment 34533 to 28921): Exon 1 33213 33081 ( 133 n); cDNA 73 205 ( 133 n); score: 0.838 MATCH C08HBa0064M21.1- SGN-E210228+ 0.838 133 0.253 C PGS_C08HBa0064M21.1-_SGN-E210228+ (33213 33081) Alignment (genomic DNA sequence = upper lines): ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACAA GATTAAAAAG TTTCTTTCTT 33154 |||||||||| |||||||||| |||||||||| |||||||| ||||||||| | | ||||| ATTTTGGTAC ATTTGACATA ACTTTAATTT AGAACCACCC AATTAAAAAG TCTTCTTCTT 132 TTCTTAAACT CC-TTCCAAG TCAAACTAGG TCATCCTTTT TGAAACGGAG GAAGTATATA 33095 |||||||||| || ||||||| |||||||||| |||| ||||| | ||| | || | |||| || TTCTTAAACT CCGTTCCAAG TCAAACTAGG TCATTCTTTT TTAAATGAAG GGAGTA-CTA 191 TTAATTAATT ATAG 33081 || || | ||| TTTTGGAAAT TTAG 205 hqPGS_C08HBa0064M21.1-_SGN-E210228+ (33213 33081) ******************************************************************************** EST sequence 51 -strand 580 n (File: SGN-E318957-) 1 TTCCACGTGT CATATTTAAG ACCACAAGAT TAAAGAGCAT TTTGGTACAT TTGACATAAC 61 TTTAATTTAG AACCACAAGA TTAGAGTTTT CTTTCTTTTC TTACACTCTG TTCCAAGTCA 121 AACTAGGTCA TCCTTTTGAA ACGAAGGGAG TAATAAATTA CTATGTTTGT ATATTGACAA 181 GCACAATAGT TCTGAAAATT TCTTATATGT ATAAATGCAG AATTTGTATA TACTTACCTT 241 GTTTGTATAT TTGCAAACAA AATATACAAA CGGATGTCAC GAACCAAAAA TGGACTTGAT 301 GGCACTCGTC TTATCTTGCC AAGACAATTC AGCCTAAAAC TCAACTTCTT CGGGGCAGCG 361 AGCTGGAGAC GAAACGAGCA AGGGGATGAC CTTCCACTAC ACAACTTCGA GTTCAAATGA 421 TAATCAAAAA CCCCGCAATC CTTTTGTTTT TAATTCAACT TCAATAGATA TATAGGTGTG 481 CTTAAACTAT TGTAAAATCT TCTTATGACT AAACTCTTTC AATAATTCTT TTCTATCACA 541 AGATGTAAAA AAAAAAAATT CTCTCCAAAA ACCATCCCTT Predicted gene structure (within gDNA segment 34203 to 27485): Exon 1 33251 33096 ( 156 n); cDNA 1 154 ( 154 n); score: 0.888 Intron 1 33095 32498 ( 598 n); Pd: 0.000 (s: 0.85), Pa: 0.848 (s: 0.52) Exon 2 32497 32453 ( 45 n); cDNA 155 198 ( 44 n); score: 0.522 Intron 2 32452 32305 ( 148 n); Pd: 0.959 (s: 0.52), Pa: 0.960 (s: 0) Exon 3 32304 32296 ( 9 n); cDNA 199 207 ( 9 n); score: 0.667 Intron 3 32295 28375 (3921 n); Pd: 0.000 (s: 0), Pa: 0.299 (s: 0) Exon 4 28374 28355 ( 20 n); cDNA 208 226 ( 19 n); score: 0.750 PPA cDNA 547 559 MATCH C08HBa0064M21.1- SGN-E318957- 0.888 230 0.397 C PGS_C08HBa0064M21.1-_SGN-E318957- (33251 33096,32497 32453,32304 32296,28374 28355) Alignment (genomic DNA sequence = upper lines): TTCCACGTGG CATGTTTAAG ACCAGAAGAT TAAAGGGAAT TTTGGTACAT TTGACATAAC 33192 ||||||||| ||| |||||| |||| ||||| ||||| | || |||||||||| |||||||||| TTCCACGTGT CATATTTAAG ACCACAAGAT TAAAGAGCAT TTTGGTACAT TTGACATAAC 60 TTTAATTTAG AACCACAAGA TTAAAAAGTT TCTTTCTTTT CTTAAACTC- CTTCCAAGTC 33133 |||||||||| |||||||||| ||| | || |||||||||| |||| |||| ||||||||| TTTAATTTAG AACCACAAGA TTAGAGT-TT TCTTTCTTTT CTTACACTCT GTTCCAAGTC 119 AAACTAGGTC ATCCTTTTTG AAACGGAGGA AGTATATATT AATTAATTAT AGATGAGTCT 33073 |||||||||| |||| ||||| ||||| ||| |||| || AAACTAGGTC ATCC-TTTTG AAACGAAGGG AGTA-AT... .......... .......... 154 TTGTGGCCGT GATGCTGAAG TAAAGCTGCA AAATATTGTA CAGAAGTTGA GGATTTATTG 33013 .......... .......... .......... .......... .......... .......... 154 TAAAAATTGC CGTGAATGAG AGATCTTTCT TACTCCATTA TTCCAAAATT CTCTCGTATC 32953 .......... .......... .......... .......... .......... .......... 154 TCATAAACCA ATCCCGAAGG AAGCTAATTA GAAATTTATG GTGTTTATTT ATTCACCTAG 32893 .......... .......... .......... .......... .......... .......... 154 TATGTATTGT TAATTTATGC TTATTTCTAT ATCATTACTT CAGGCTTTAA TGGTCATGCC 32833 .......... .......... .......... .......... .......... .......... 154 ACCGTGGAAA GTATACATGG GTGATTTTTC CCGGAAAAGG TTAGTAAATT ACTAGATACT 32773 .......... .......... .......... .......... .......... .......... 154 TGTGAACAAG ATCGAAATCA CAACAGTAGA AAATTCTAAT TATGATCAAT AATGGTTTTA 32713 .......... .......... .......... .......... .......... .......... 154 CTTACTATTA TACTAATAAA CATTATATTT CACAATAGAG TTGATGGTAA AAGATGCACC 32653 .......... .......... .......... .......... .......... .......... 154 TCAAGTATCC CTGATTTTCG AATTTCATAC CTAAACTACC AAGTGTATGA GTTTCCTACC 32593 .......... .......... .......... .......... .......... .......... 154 TAAACTATTG CTAACTATTT ATCAAAATAC AATGCAACTA CCAATTTTTA CCTTTTCCTG 32533 .......... .......... .......... .......... .......... .......... 154 AACTATAAGT GTGTTTTTGA CCCTTAATTT TACAGTAATG AATAT-TGTG TTTATGAACA 32474 ||| | ||| | || | ||| ||| .......... .......... .......... .....AAATT ACTATGTTTG TATATTGACA 179 ACATTTAACT AGGATAGGAA GGCAAGAGTT TGTGATATAT AATTTGTTAT CAAGTTGAAA 32414 | || | || | || A-GCACAA-T AGTTCTGAAA A......... .......... .......... .......... 198 ATGTTGATTA GAATATAGTC TTATAAAACT ACAAAAGGAA GTCATGCTTT ATTTATATAA 32354 .......... .......... .......... .......... .......... .......... 198 ATTCATCTGC TATTTATTTT TTCCAAAGAC AATTTATATA TAATTTTAGT TTATAAGAGC 32294 | || | | | .......... .......... .......... .......... .........T TTCTTATA.. 207 CGTCAAAATT GACTTAGCCC ATGGGGCCGG CCCAACCCAA CCCGTTATTG GGTAGGGTTG 32234 .......... .......... .......... .......... .......... .......... 207 GGATATGATA TTTTTAGCCC ATTTAAAACT AGGGCTTATA AGCTCGGCCA ATATAAGCCC 32174 .......... .......... .......... .......... .......... .......... 207 TTGACCCTTG AGGCTTGATT GGGGTCGGGC CGGGGTCGGC CCATGGCCAA AAATATTTTA 32114 .......... .......... .......... .......... .......... .......... 207 TTTATACCAT AGATAGCTAA TTACTTAAAA GGCACGCTAT ATTGTAATAT TACGAATCTT 32054 .......... .......... .......... .......... .......... .......... 207 ATTGGGATAC ATAGACTCAA AATTAGGTTA ATTTGTTCTA GATACATTTT CACTGTGCAT 31994 .......... .......... .......... .......... .......... .......... 207 TCATATGTAT CTAGGATACA TAGAGAAATA TTGCGCCCTT GCCTTCCTTC TATCTGACTC 31934 .......... .......... .......... .......... .......... .......... 207 GCGCATTTGG GATGCATCAC ACCATATACA ATGATACATA TATCTAGTAT CCTTGATACA 31874 .......... .......... .......... .......... .......... .......... 207 TGCTAATCAC ACTAGAGTTT TTGCTAGTGT TGTTGAAACA ACACCATTAT TTGTCATATT 31814 .......... .......... .......... .......... .......... .......... 207 TGATTTGAAA AAGAAAAAAA TAAAAAAAGA AGGGCTAGCC CGCGGCCCTT CTAGGGTTAG 31754 .......... .......... .......... .......... .......... .......... 207 GTTGGGTTGG ACATTTTCAG GCCTTTCCAA ATGAAGGGCT GGCCTTCCCT AGATCAAATT 31694 .......... .......... .......... .......... .......... .......... 207 TCTGGCCCAC GAGGCTTGGA CCAGGTGGGG CTAGGTTGGC CCTTTTTGAC AACTTCACTC 31634 .......... .......... .......... .......... .......... .......... 207 ACTTTATATA TATTTATTAT TTGCTTGGAA TTGCAATATA AAATTGTATG ACTTATAATA 31574 .......... .......... .......... .......... .......... .......... 207 TATAATTGAT TTTTGTATTT TAATATTATT ATCTTTTACC TAGAGTAGAT GTTTCCCCGC 31514 .......... .......... .......... .......... .......... .......... 207 GCAAAGCGCG GGCGGGTTTA TTAACTAGCG ACAATGGAGA ACAAAAGAAA CACAATCCAC 31454 .......... .......... .......... .......... .......... .......... 207 CTTTATCCCA CTCCCATTCA ATCTCAGATG AAAGCCAATA AATATACCTT CTTTTTAGTC 31394 .......... .......... .......... .......... .......... .......... 207 TCAGATGAAA GCCAATAAAA TATACCTTCT CTTTCTTTAT CAAATCCCAA CCAGTAGCGC 31334 .......... .......... .......... .......... .......... .......... 207 TACTAGAATA GTTGATCCAT GTGCTTCACC ATAATGGCTA GACTTAAATA TTTCCACTCA 31274 .......... .......... .......... .......... .......... .......... 207 CTTAGCAAAT ACCACAGCTC CAGTTCAAAC ATGTTTCAAC ATACTCATAA ATGTTCTCGC 31214 .......... .......... .......... .......... .......... .......... 207 ATTTTCTATA GATATGGTTA ACCTTACACC AACACAAAAC ATGAAATATG TAACTGTAAT 31154 .......... .......... .......... .......... .......... .......... 207 TCAACTCCGA TCTCATCAAG GAGATGAGTT ATGGCAATCT GAATAATTGC ATGGTTACCC 31094 .......... .......... .......... .......... .......... .......... 207 TCAAGGTACT TCCTCACTAA GTGTGAATTT TTTCCAAAGC AGAAGGAACT GATGCAAAAA 31034 .......... .......... .......... .......... .......... .......... 207 TAACAGTGGC TAGAATATTT AGAGCACCAG AGAAGGTTCA CTAGCTTTGA ATGTTGGAAA 30974 .......... .......... .......... .......... .......... .......... 207 GCTTTGGTGA CATTGGCTAA TACCATAATA AGAGAGATTT CATCTCCTCT TCATTTTCTA 30914 .......... .......... .......... .......... .......... .......... 207 ATAGGAATAT TCGTAAATCC ATCGAGGTTA AAGCGCCTGG CTTCTATTCC AAATATGCCC 30854 .......... .......... .......... .......... .......... .......... 207 ATCCATTTTA CCTCTCTAAC GAAGGGAAGG GAAAGAGTAA ATAACACTGG AATAGACGAT 30794 .......... .......... .......... .......... .......... .......... 207 CTCGACCCTC CTATAAAGTT TTGGTCTTCC AGCCCCTACT GTTTTACAAA GTTGAAGTAT 30734 .......... .......... .......... .......... .......... .......... 207 AAAAAAGGAT AATACTTAAT AGTACATAAA GTTACTCTAC CACTTAATAA ATGCAGAACT 30674 .......... .......... .......... .......... .......... .......... 207 GGACATAATT GGTCATAAAT TTGGCAATCT GTGAGAAATG AAACAAAGAG AAGTCACCAC 30614 .......... .......... .......... .......... .......... .......... 207 AGTCACAGGA AACTATAGCA TGAAAACCGA TCACTTACCT CTTCTGTCAT AGGTAAACTA 30554 .......... .......... .......... .......... .......... .......... 207 GCAGAGTCAC TCCGCTCTAA ATTTGATGTT GCTCCATCAT TCTCCATGGG AGAATCCTCA 30494 .......... .......... .......... .......... .......... .......... 207 ATCCTAGCAG AAATGTGGTT TCTAATCTTG TCTTCTCGGG GATGTGCTTC ACTTGTTGAG 30434 .......... .......... .......... .......... .......... .......... 207 CAGCGTTTAG ATACATCATA AGATGCAGCT TTTGAATAGC GCTCATTTGA AGTTGGAATG 30374 .......... .......... .......... .......... .......... .......... 207 TCAGAATAGC TTGTATTGTC ATGGTCCAGT ACACCAGGTC CTTCCAAATG GTCAACAGCA 30314 .......... .......... .......... .......... .......... .......... 207 GCCAAAACTT CCCCTGAATT TCCAAATTTT GTTCTCTGAA TATCTGTCTT GACAGACATG 30254 .......... .......... .......... .......... .......... .......... 207 GGGCTTCTGT CTTTAAAAAA ATTGCAATTG CTTTGAGTCA ATTCCCTCAT AACTTGAAAA 30194 .......... .......... .......... .......... .......... .......... 207 GGAATACTAG TACCATTATC AACAATCATG GTAGTGCTAG TAACAATTCA AATAGTAGAT 30134 .......... .......... .......... .......... .......... .......... 207 AAAGCATCAG TAACACAAAC CAAATTTGAA TGTCAAGAAA GCATTAGACA TGCAAAAATT 30074 .......... .......... .......... .......... .......... .......... 207 AGTTCCTTTT AACAAAAGGG TAGTAGCTTA ATCACCTGGT CTAGAAGCAT GTGCATCTTT 30014 .......... .......... .......... .......... .......... .......... 207 CTTAAGATAG TCTTCCTTTT CAAGGATCTT AGACTTCTTC TTACCACTTT GATCATTGGA 29954 .......... .......... .......... .......... .......... .......... 207 TATCCCACAG TCTTCTTTGG TACCCTTGTT GCCTTGTATC ATGCTAGAAC CCAATAAACC 29894 .......... .......... .......... .......... .......... .......... 207 TGTGTCCTTC ATATCATTGG TTGAGCGAGT AGTAGCATCT GAATCCATAG CATTTTGGGA 29834 .......... .......... .......... .......... .......... .......... 207 CTCAAGAACA TGCTTCTCAG AAACAGGGTT AACCACATGT GCAAACAAGC AGTTTTCCTT 29774 .......... .......... .......... .......... .......... .......... 207 TGACGATGAG AATAAAGCAC CAGCACCATT ACCATTAATC ATCTCATTGC CTTTGTCACT 29714 .......... .......... .......... .......... .......... .......... 207 GGTATTATCA TGGGCGTCCC TTGTTTCATT ATCCCAACAA GGAAATTCGC TATATTTAAA 29654 .......... .......... .......... .......... .......... .......... 207 ATTAAACATT TTGGGAACAT AACCCCTGCA TTTCCACAAT TCACGACCAA ATACAGATGA 29594 .......... .......... .......... .......... .......... .......... 207 TAACCCAGAA AACAAAGCTG GATCACCACC AGGGACACCT TGCATGTGAA CCCTTTCTTC 29534 .......... .......... .......... .......... .......... .......... 207 CACTGGCAAA TCAGTCCAAA GTCTAAAGGG GCTACGGATA GGGAGAGTAT TAGGATATGG 29474 .......... .......... .......... .......... .......... .......... 207 AGAATTCATG GTCAAAGTCT TGGTGGGCAA CTCAACAAGC AGCTGAGCAA CCTCAGTTTC 29414 .......... .......... .......... .......... .......... .......... 207 TTCGCTATTA TTTGTGGTGG CTTTATTCTT ACACTTATCA CATGCAAATA ATTTCTCACT 29354 .......... .......... .......... .......... .......... .......... 207 CTTGACATAC CGCACACAAC GTGTATGTAC CCACACACTG CACTCGTCGC AATTCACCAT 29294 .......... .......... .......... .......... .......... .......... 207 TTCCTCTCCA TCATCAAAAT TGACACCACA CACACAATCC ACTGTCCATG AACCATCAAT 29234 .......... .......... .......... .......... .......... .......... 207 CCAGTCATCC TGTGGGTTCG CAACAGGAAG CCGGTGAGAC CGGCTCTTCA TGGTTGCAAG 29174 .......... .......... .......... .......... .......... .......... 207 GTTGGCTCAA CCCTAAGCAA GCAGTGGCTT TAGGCCTAAA ACAACAATTA CAAATCTACG 29114 .......... .......... .......... .......... .......... .......... 207 AAAGAAGCAA AAAGCCCCAA ATTCAAATTC AGTTTTAAAA AAAAACGCAA GGATATATAT 29054 .......... .......... .......... .......... .......... .......... 207 CATGAATGAA TGAGAATCAA AGGCGCATAT ATATACAAAT CCGAAGCACA GAAAACAAAT 28994 .......... .......... .......... .......... .......... .......... 207 AAATTCGATT AAACGAAGAA GCACAAGTCG AAATCACACC CAAAAGCATA GCAAGGACCG 28934 .......... .......... .......... .......... .......... .......... 207 AGTATAAAGA TGAAGGAAAT CCATTTATAC ATACATGAGA AAGAGATAAA CAAGAGAGCT 28874 .......... .......... .......... .......... .......... .......... 207 CAACAAATCT GACGAATCCC ATGTTAATGG CGTTCCAATG TGAGAAGCAC CCAAAGCAGA 28814 .......... .......... .......... .......... .......... .......... 207 ATAAACGCCA CCGCTTGTAA AGACCAGAAT ACCCTTGCTG AATATACTTT ATTAAAATTT 28754 .......... .......... .......... .......... .......... .......... 207 TATTACTCTT TAAAAATATA TTACTGTATG ATTTAAAGTA GTACATACTC ACTCCATAAA 28694 .......... .......... .......... .......... .......... .......... 207 TTTGCAATTA TTTTTTTATC TGTCTAATTT ACTTATATTA ACTTTCCAAC ATTAATGTCT 28634 .......... .......... .......... .......... .......... .......... 207 TCTTAGACAT TTCATGTTTA AATTATTGAA CAAATAAATT TAATAAAATG CAATGTCTTA 28574 .......... .......... .......... .......... .......... .......... 207 AATTTAAATT TCATTTAAAG TAATAATCAT TACAAAATTG ATGATTTGGA CTTTTTTTTT 28514 .......... .......... .......... .......... .......... .......... 207 AATTTTAAAA TAATAGAAAT TAGTATATAA ATAAAATAAT AATAGTCTAA TTAACATTCT 28454 .......... .......... .......... .......... .......... .......... 207 CAATGCAATG AAGTCTTAAT TTTATTTTTA AGCACTTTTA AAAAAATAAA AGGAAAGTGT 28394 .......... .......... .......... .......... .......... .......... 207 CTTGGTGCTA TTCCGATAGG GGATCAAATG CAAACTTTG 28355 | || ||||| || | |||| .......... .........T GTAT-AAATG CAGAATTTG 226 hqPGS_C08HBa0064M21.1-_SGN-E318957- (33251 33096) ******************************************************************************** EST sequence 82 +strand 621 n (File: SGN-E326311+) 1 TTTTGTTTTC AGTGTAGTGA CAATTCTGTG AGTTATGAAT TCAGTGAACC TAGGTTGATC 61 AACCTTTTGT GTTGTTAGGA GCTCATTTGA ATTCAAACTG ATAACATTAA CCTCCTCGGC 121 ATCATCTTTT ATATTATACT CCCTCCGTTT AAAAAAGAAT GTCCCTATTT CCTTTTTAGT 181 TTGTTTAAAA AAGAATGTCC CCTTTCCTTT TTTGGCAACA CTTTAACTTT AACTTTCCAC 241 GTGACATGTT TAAGAACACA AGATTAAAGG ACGTTTTGGT ACATTTTACA TAACTTTAAT 301 TTAGAGCTTA TTTTCTTAAA CTCTGTTCCA AGTCAAACTA GGCCATCCTT TTTGAAACGG 361 AGGGAGAAAT AATTTACATG CTGGATAACT GTATGGAGCC GAGTCTCTTG CATCTGGACG 421 CTTTCCCATT CTTCGTGAAT TATTAACTGT ATAACCTTCC TTTGAAACTT AAAGCTAATG 481 GAACTCCCTA CTGATTAGTT GTACAAAATA AGGAAATTTG TTTCACTGTC CCAATATAAA 541 AAGAGACCAC TCTAGTACCT TAGATTTTAG TATCACAGTC AACCTCTATT TGATTGCTGT 601 TCCCTTTCTC AATACTATAA C Predicted gene structure (within gDNA segment 35867 to 29914): Exon 1 33351 33104 ( 248 n); cDNA 136 363 ( 228 n); score: 0.841 MATCH C08HBa0064M21.1- SGN-E326311+ 0.841 248 0.399 C PGS_C08HBa0064M21.1-_SGN-E326311+ (33351 33104) Alignment (genomic DNA sequence = upper lines): ATACTCTCTC CGTTTCAAAA AGAATGTCCC TATTTTCTTT TTAGTCCGTT TCAAAAAAGA 33292 |||||| ||| ||||| |||| |||||||||| ||||| |||| ||||| ||| | |||||||| ATACTCCCTC CGTTTAAAAA AGAATGTCCC TATTTCCTTT TTAGTTTGTT T-AAAAAAGA 194 ATGACCCCTT TCCTTTTTTG GCAACACTTT AACTTTAACT TTCCACGTGG CATGTTTAAG 33232 ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATGTCCCCTT TCCTTTTTTG GCAACACTTT AACTTTAACT TTCCACGTGA CATGTTTAAG 254 ACCAGAAGAT TAAAGGGAAT TTTGGTACAT TTGACATAAC TTTAATTTAG AACCACAAGA 33172 | || ||||| |||||| | |||||||||| || ||||||| |||||||| || AACACAAGAT TAAAGGACGT TTTGGTACAT TTTACATAAC TTTAATTT-- -------AG- 304 TTAAAAAGTT TCTTTCTTTT CTTAAACTC- CTTCCAAGTC AAACTAGGTC ATCCTTTTTG 33113 || | || |||| ||||||||| ||||||||| |||||||| | |||||||||| ------AG-- -C-TTATTTT CTTAAACTCT GTTCCAAGTC AAACTAGGCC ATCCTTTTTG 354 AAACGGAGG 33104 ||||||||| AAACGGAGG 363 hqPGS_C08HBa0064M21.1-_SGN-E326311+ (33351 33104) ******************************************************************************** EST sequence 49 +strand 604 n (File: SGN-E269095+) 1 AGGTACAACA AAGTCTTCTG CTCCTGAGAG TCGAATATTC TCGAAAGCTC ACCATCATGA 61 TTCTAATGGT AAACTGAGGG GAATTTCTGG GAGCAATCTG AGTAATAAAA GAGAGAGTTC 121 GTCAATGGAT GCTGGTAGGG ATGAAGAGAG GCGTGAAAGA CCAAAGAAAA TGTTGAAAGA 181 GCTCCCAAAG TCATCAGTTG GTTCAGCATC GAAGATATTG CAGTCGACCA AGCTCTCTCA 241 TGCTCCAGTG AAGAAAACAG TATCAGAAGC CAAGGATTCA GTCCCCAATT CTTCTGCTAA 301 AGCATCAACT GTGCGTAGTA ACCCTGCTAG TGCACGCTCT GCAGAGTCTT CTAGCTCACT 361 GCAAAGTGAG AGTGCGGCAC ACATTCAGAA TAAAGCTGCA GGTACACATT TGACACAAAA 421 ATGCGAGAAG ACAAACCAGC CAAGTTGCCA GCCATCTTCT AAACTGAATG CACACCTGAT 481 GCATCCTCCG TCTTCATCAT CCCCTGCAGC ACTAAGTGAT GAAGAGCTTG CTCTACTGCT 541 TCATCAAGAA CTTAATAGTT CTCCTAGAGT TCCTCGAGTG CCACGGATGC GCCATGCTGG 601 TAGC Predicted gene structure (within gDNA segment 35937 to 37831): Exon 1 36537 37062 ( 526 n); cDNA 1 526 ( 526 n); score: 1.000 Intron 1 37063 37143 ( 81 n); Pd: 0.977 (s: 1.00), Pa: 0.896 (s: 1.00) Exon 2 37144 37221 ( 78 n); cDNA 527 604 ( 78 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E269095+ 1.000 604 1.000 C PGS_C08HBa0064M21.1+_SGN-E269095+ (36537 37062,37144 37221) Alignment (genomic DNA sequence = upper lines): AGGTACAACA AAGTCTTCTG CTCCTGAGAG TCGAATATTC TCGAAAGCTC ACCATCATGA 36596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTACAACA AAGTCTTCTG CTCCTGAGAG TCGAATATTC TCGAAAGCTC ACCATCATGA 60 TTCTAATGGT AAACTGAGGG GAATTTCTGG GAGCAATCTG AGTAATAAAA GAGAGAGTTC 36656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAATGGT AAACTGAGGG GAATTTCTGG GAGCAATCTG AGTAATAAAA GAGAGAGTTC 120 GTCAATGGAT GCTGGTAGGG ATGAAGAGAG GCGTGAAAGA CCAAAGAAAA TGTTGAAAGA 36716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATGGAT GCTGGTAGGG ATGAAGAGAG GCGTGAAAGA CCAAAGAAAA TGTTGAAAGA 180 GCTCCCAAAG TCATCAGTTG GTTCAGCATC GAAGATATTG CAGTCGACCA AGCTCTCTCA 36776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCCAAAG TCATCAGTTG GTTCAGCATC GAAGATATTG CAGTCGACCA AGCTCTCTCA 240 TGCTCCAGTG AAGAAAACAG TATCAGAAGC CAAGGATTCA GTCCCCAATT CTTCTGCTAA 36836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCCAGTG AAGAAAACAG TATCAGAAGC CAAGGATTCA GTCCCCAATT CTTCTGCTAA 300 AGCATCAACT GTGCGTAGTA ACCCTGCTAG TGCACGCTCT GCAGAGTCTT CTAGCTCACT 36896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATCAACT GTGCGTAGTA ACCCTGCTAG TGCACGCTCT GCAGAGTCTT CTAGCTCACT 360 GCAAAGTGAG AGTGCGGCAC ACATTCAGAA TAAAGCTGCA GGTACACATT TGACACAAAA 36956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGTGAG AGTGCGGCAC ACATTCAGAA TAAAGCTGCA GGTACACATT TGACACAAAA 420 ATGCGAGAAG ACAAACCAGC CAAGTTGCCA GCCATCTTCT AAACTGAATG CACACCTGAT 37016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCGAGAAG ACAAACCAGC CAAGTTGCCA GCCATCTTCT AAACTGAATG CACACCTGAT 480 GCATCCTCCG TCTTCATCAT CCCCTGCAGC ACTAAGTGAT GAAGAGGTAG AAGTTGAATT 37076 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCATCCTCCG TCTTCATCAT CCCCTGCAGC ACTAAGTGAT GAAGAG.... .......... 526 AATGAATGTT TAAAGTTCAA TATTTTCCTC TTAGCTTACG CTTGTGCGGC TGGTCATTTT 37136 .......... .......... .......... .......... .......... .......... 526 TATGTAGCTT GCTCTACTGC TTCATCAAGA ACTTAATAGT TCTCCTAGAG TTCCTCGAGT 37196 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CTT GCTCTACTGC TTCATCAAGA ACTTAATAGT TCTCCTAGAG TTCCTCGAGT 579 GCCACGGATG CGCCATGCTG GTAGC 37221 |||||||||| |||||||||| ||||| GCCACGGATG CGCCATGCTG GTAGC 604 hqPGS_C08HBa0064M21.1+_SGN-E269095+ (36537 37062,37144 37221) ******************************************************************************** EST sequence 54 +strand 632 n (File: SGN-E332392+) 1 AGAGACGCTT CGTGTATTTG TGCAGATCAA AACTCGAATC GGGGAATTTG GGTTTCTCCT 61 GTAATCTAGG GTTCATAACT CCCCCCTTTC GGATCTGCTA GGGTATTGTG TGGATCATGA 121 CGATTCCGGA TTCAACCTAC ATGATGGAAA ACGGATCTAT TGAATTGCCG TGCACCTCTG 181 AAGAAGAGGC AAGGATCATT CAAGAGCTTA TGAGCAAAGC TGAGTCCAAT TTGAAACAAG 241 GCAATCTTTT TTATGTTGTT TCTAACAGGT GGTTCATGGA TTGGCAGAGG TACATTAGGA 301 AGCCTCTTGG TGCTTATCCA TTTAACGAGC ATGCTACCGA ATCTCTGCAT TCTCTTTTAC 361 CAAATTCAGC TAATAGACCT GGACCAATTG ATAATAGCGA TATAATAATT AGAGAAGCTG 421 ACAGTGGAGA TGATGATCCA CAGCTTCTCA GAACTTTGGA AGAAGGGCGT GATTATGTGT 481 TGGTCCCACA AGAAGTATGG GAGAAGCTCT CTGAGTGGTA TAAAGGAGGA CCAGCATTAC 541 CTCGGAAAAT GATATCTGTG GGAGATGCCA AGCAACTTAG TGTGGAGGTG TTCCCGTTGT 601 GTCTCAATTT ATTTGATACT AGAGATAAAA GC Predicted gene structure (within gDNA segment 40216 to 45566): Exon 1 40816 40917 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 40918 41022 ( 105 n); Pd: 0.997 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 41023 41188 ( 166 n); cDNA 103 268 ( 166 n); score: 1.000 Intron 2 41189 43808 (2620 n); Pd: 0.228 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 43809 44057 ( 249 n); cDNA 269 517 ( 249 n); score: 1.000 Intron 3 44058 44841 ( 784 n); Pd: 0.995 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 44842 44956 ( 115 n); cDNA 518 632 ( 115 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E332392+ 1.000 632 1.000 C PGS_C08HBa0064M21.1+_SGN-E332392+ (40816 40917,41023 41188,43809 44057,44842 44956) Alignment (genomic DNA sequence = upper lines): AGAGACGCTT CGTGTATTTG TGCAGATCAA AACTCGAATC GGGGAATTTG GGTTTCTCCT 40875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGACGCTT CGTGTATTTG TGCAGATCAA AACTCGAATC GGGGAATTTG GGTTTCTCCT 60 GTAATCTAGG GTTCATAACT CCCCCCTTTC GGATCTGCTA GGGTTCGTCT ATTCCTTTTC 40935 |||||||||| |||||||||| |||||||||| |||||||||| || GTAATCTAGG GTTCATAACT CCCCCCTTTC GGATCTGCTA GG........ .......... 102 TCATATTCCT GTTACTTTTC TTTTTTGTAA ATTCAATTTT GAACTGGAAT CTCTCTTCTT 40995 .......... .......... .......... .......... .......... .......... 102 ATTGTTTTTT ATTATCATTA TTACTAGGTA TTGTGTGGAT CATGACGATT CCGGATTCAA 41055 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTA TTGTGTGGAT CATGACGATT CCGGATTCAA 135 CCTACATGAT GGAAAACGGA TCTATTGAAT TGCCGTGCAC CTCTGAAGAA GAGGCAAGGA 41115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACATGAT GGAAAACGGA TCTATTGAAT TGCCGTGCAC CTCTGAAGAA GAGGCAAGGA 195 TCATTCAAGA GCTTATGAGC AAAGCTGAGT CCAATTTGAA ACAAGGCAAT CTTTTTTATG 41175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCAAGA GCTTATGAGC AAAGCTGAGT CCAATTTGAA ACAAGGCAAT CTTTTTTATG 255 TTGTTTCTAA CAGGTCTGCT TTTTATTTTG ATGTTCCATT CTAGCAAGCA TTGCACCGCG 41235 |||||||||| ||| TTGTTTCTAA CAG....... .......... .......... .......... .......... 268 CCATTTTGTG TTTCTTTCTT TCTTTCCTGT TTTTATTTTT GATTACCTAC AAATTCCCAT 41295 .......... .......... .......... .......... .......... .......... 268 AGGCGCTCTT CTCTTGCCAT TAGACCAATG CCTTGGGGAC AAATTTCTTT TGCTGCTCAC 41355 .......... .......... .......... .......... .......... .......... 268 TCACATCTAT CAGCTAAATA ATTAGGGCTT CTGCCACCAT GTTATGTTTG TAGTAAATGA 41415 .......... .......... .......... .......... .......... .......... 268 GTTAATGTGC TAGTTTTCGA TAACTTATCA CTACAAGGTA TTTCTTTTTA TCAGGTAAAA 41475 .......... .......... .......... .......... .......... .......... 268 TATATCATTA ATACTAACAA GGTATTTGAA TATTAATTTA AAGAGATTAA CCTGATATGA 41535 .......... .......... .......... .......... .......... .......... 268 ACTGTTTCGG AAGTAATTGG GTTATGATAT GACTCATTCT AGTCCATGAA TTTTGGTTTT 41595 .......... .......... .......... .......... .......... .......... 268 GAAACATTAA AAATTTGCTC AAGTTTCCAA GCAGCATATT TTTTTTTTTT TGAAACTAGT 41655 .......... .......... .......... .......... .......... .......... 268 AACTTTAGTC TGTATATCCA CAGGTATACT ACAACAAAAG TGTATTTCCC CTTTAGAAGT 41715 .......... .......... .......... .......... .......... .......... 268 GTTACAACTT ACAGAATAAA ATAGTCTTAG TCTAAACTGT TACCTATAAC TAGGACATCA 41775 .......... .......... .......... .......... .......... .......... 268 AAGATATCTT CTGTCCTAGT TAATATATCT TGTTCACACC AAAAATAGAA AAGAGCTAAG 41835 .......... .......... .......... .......... .......... .......... 268 CAGTCCATCT TGATCTTCTG TAAGCTATTC TGCCAATTTT CAAAACTCCT GCTGTTTCTC 41895 .......... .......... .......... .......... .......... .......... 268 TCTTTCCAGA TTGTCCACCA AATACATGCC GAGACAAGTT TCAACCTCTT CTCCTTGTCA 41955 .......... .......... .......... .......... .......... .......... 268 GAAGCATTGC CATCTCTATT CCAGCTGCTC AAGATTCTTT TGATGCTCCC TGGTTTCACC 42015 .......... .......... .......... .......... .......... .......... 268 CATCTTATCC CCTTTAGACA GATGAACATT TTCCATAATT GTTCTGTCCA TGTACAATGC 42075 .......... .......... .......... .......... .......... .......... 268 AAAAAAATAT GGTTAATTTG TCTCAGCATG TTCTCCTCAT AAATTACATC TCGAAGCCAA 42135 .......... .......... .......... .......... .......... .......... 268 CTAATAGCCT CTTTGCTTTA AATTTTCATG AGTCAAAACT GCTTCTTTTG TTAATAGCCA 42195 .......... .......... .......... .......... .......... .......... 268 CATGAAGCAA TTTACTCTGT AGGGTACTTT TGGTTTCTAG ATGATCTTCC ATGGCCATTC 42255 .......... .......... .......... .......... .......... .......... 268 CATCTCCTGT CCAGCATTCT TGTTGAGTTC CTTGTACACT GTATTTACTG ATTGACCTTT 42315 .......... .......... .......... .......... .......... .......... 268 GGTATCATTC TGCCAAACTA ATAAGTCCTT CTTTCCAGTG AGGTTGCTGA AAGAGCCTAC 42375 .......... .......... .......... .......... .......... .......... 268 TGAATTTTGA AATTCTGCCA CTTTGTCAAT CTCCCAATCC TAAGGTTCCT CCTTAAGAAC 42435 .......... .......... .......... .......... .......... .......... 268 AAAGGCCATC CTTGTCCAGT CCACATTGTA TCCACAGTGG CCTGTTGATG TTGGCATAAA 42495 .......... .......... .......... .......... .......... .......... 268 GTGAATAATT CAGGATGTAA CTGTTTCATA GGTACAGACC CATTCCATTT ATCCTCCCAA 42555 .......... .......... .......... .......... .......... .......... 268 AAGGATGTCT TTGACCCATC TCCCACTTCT ACCTTGGTTC TGTGATATAG CACTGGCCAT 42615 .......... .......... .......... .......... .......... .......... 268 AGATTTGTGT AGTGCATTTA TATGGAGTAC TTATCATTTT ACTCATCCAC TTATCTTCCA 42675 .......... .......... .......... .......... .......... .......... 268 TGCCATATTT TGCTATGATG ACCTCTTTCC AGAGCATGTT ATCTCATTTG CAAACTTCCA 42735 .......... .......... .......... .......... .......... .......... 268 CAACCACTTC ATCATTAGGC TCTGGTTTTG TTCCTAAGAT TCTTATGCCT TGGCATCTTG 42795 .......... .......... .......... .......... .......... .......... 268 TGTTTTTACT CACCATCAGT TCTTTCCATT TAACAAGATG AAACTTCTTC TTATCTTCAC 42855 .......... .......... .......... .......... .......... .......... 268 TGCCTTGCCA TAAGAAATTT CTTCTAAGTG CATCAATGCT ATTAGATACA CTAACAGGCA 42915 .......... .......... .......... .......... .......... .......... 268 TAGGGAAGAC TGACATCATA TAAGATGGTA ATGTATCCAT CACACTGTTA ATTAAAGTCA 42975 .......... .......... .......... .......... .......... .......... 268 ATCTTCCTCC CAAGGACAAG TACTGACTCT TCCAGCTGGT GAGTCTCTTT TCATTATTTC 43035 .......... .......... .......... .......... .......... .......... 268 TCCAGTATCC GTTTCCATGT GCCTTTGGAC TTGCTTTTAG CTCCCAAAGG CATACCTAGG 43095 .......... .......... .......... .......... .......... .......... 268 TAAGTAGTTG GAAGCTCCCC AATCTTGCCT CCTAGTTTTC TGCTCAAAAC TTCTGTATTC 43155 .......... .......... .......... .......... .......... .......... 268 AGCAAACTGT TGATTGGATA GATGATAAGT GCTGTTTTCT CACCTATATT ATATGTAAGA 43215 .......... .......... .......... .......... .......... .......... 268 AAAGGAAGCT ACTTGAGAAA GACTCTCTTT GTTCTTCCTC TAGGCAGAAT CTACAACATG 43275 .......... .......... .......... .......... .......... .......... 268 ATTAAGCACT AAGCATATAG AGTTGATAGT TATGTACCAA GTAAAATCAT CAATGTGAAC 43335 .......... .......... .......... .......... .......... .......... 268 CTGAATGGGC TGTACTGGTA AAGAAAGTTT GAGAGCTGAA GTACTACGTT GACTATGATT 43395 .......... .......... .......... .......... .......... .......... 268 CATTGGATCT GTGAAACATT ACCTTAATAT TTGTAGAGAC CAGGACTGTG ATCTTACTAG 43455 .......... .......... .......... .......... .......... .......... 268 AGGCAAATAA TGCCTGGTGG TTTCTTCTTA TCTAAGTCAT ATGACGCTTC AGCTATTCAG 43515 .......... .......... .......... .......... .......... .......... 268 ATCCTCCCCT TTGTTGCGGT GGCCATTTTG CAATTTCATT TTACCTTAAA GATTGGTGCT 43575 .......... .......... .......... .......... .......... .......... 268 CCATAATATG GTTACAGATG GACACTTCAA CCAGTTCCAG ATAAGAAATT GATTTGTTGA 43635 .......... .......... .......... .......... .......... .......... 268 CTACTCTGCT GACTTCGTAG CTGTTTGATT ATTTCTTCTT TTTTCTGGTC TGACCTTATG 43695 .......... .......... .......... .......... .......... .......... 268 GTATTTAGGT AGTTAAGTGT TTTTCCAGTT GCTAAAAAAA TAAAAATAAA TTAGAACATG 43755 .......... .......... .......... .......... .......... .......... 268 TCATAAAGGA ATAAACTTGA AAATTCATGC TCTAATTTTG TCTGTATGTT TAGGTGGTTC 43815 ||||||| .......... .......... .......... .......... .......... ...GTGGTTC 275 ATGGATTGGC AGAGGTACAT TAGGAAGCCT CTTGGTGCTT ATCCATTTAA CGAGCATGCT 43875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATTGGC AGAGGTACAT TAGGAAGCCT CTTGGTGCTT ATCCATTTAA CGAGCATGCT 335 ACCGAATCTC TGCATTCTCT TTTACCAAAT TCAGCTAATA GACCTGGACC AATTGATAAT 43935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGAATCTC TGCATTCTCT TTTACCAAAT TCAGCTAATA GACCTGGACC AATTGATAAT 395 AGCGATATAA TAATTAGAGA AGCTGACAGT GGAGATGATG ATCCACAGCT TCTCAGAACT 43995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGATATAA TAATTAGAGA AGCTGACAGT GGAGATGATG ATCCACAGCT TCTCAGAACT 455 TTGGAAGAAG GGCGTGATTA TGTGTTGGTC CCACAAGAAG TATGGGAGAA GCTCTCTGAG 44055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAAGAAG GGCGTGATTA TGTGTTGGTC CCACAAGAAG TATGGGAGAA GCTCTCTGAG 515 TGGTAAGGCT TTCTTGCTTA TTTCTCATTC ATCTTTCTTT ATCAGACAGT GCAGTGGAAC 44115 || TG........ .......... .......... .......... .......... .......... 517 TTAACTTGGC AACACAGCTT ATGGTTTCTG GAAAATACTC CCATTGTTTG TTCATGAGTA 44175 .......... .......... .......... .......... .......... .......... 517 GAAGATACTC GATGTTTTGA AGGCATTTTT TGTCGAACAA CAGCTATGCA AAATTCCCCA 44235 .......... .......... .......... .......... .......... .......... 517 TGATTTTCTT TTGTGAACTT CACTGTTCAG ACAGAGTTGT CTGTGGATGG TTATGGTCGA 44295 .......... .......... .......... .......... .......... .......... 517 CTGTCGTGAT TAGAAGTACT ATGCTGTTAC TTAATGCCCC CTTTGTTTTA ATTGAAGTAT 44355 .......... .......... .......... .......... .......... .......... 517 ATTACTTTTC TTTTTTTGTC CGGTTTCAAA ATGAATGTCT CTTTCTATGT TTGGTCTTCA 44415 .......... .......... .......... .......... .......... .......... 517 ATTCCAACTT TCTACATGAT TAAGTAAATG TTGGTCTCTC TTTTTTGACC ATAAGATTCG 44475 .......... .......... .......... .......... .......... .......... 517 TAGGCTATTT TGGTCATTAT ACACTACATG ATTAAAAAAT CTCCTTTTCT TAAATTCCAT 44535 .......... .......... .......... .......... .......... .......... 517 GCCTAGTCAA ACTTAGACTC TTAAACTAAA ATGGAGTGAG TATTTTTTTT CTTTATCAGT 44595 .......... .......... .......... .......... .......... .......... 517 GGAAGGGGAG CTGGATTGGA TCAGTAGCTC CCCTTCTTTC TATTTTAGTT AGGGTCTTAA 44655 .......... .......... .......... .......... .......... .......... 517 AAAACCCTTT AAGAGCTGAT TGTCAAAAAC ATTTACTCTT CCCTGGGATT CACATGCTAT 44715 .......... .......... .......... .......... .......... .......... 517 TCTTTTCCCA GGTACTAGCG TACATGTTAG TGATCTGCTA AAATTGTGAG GGATTTACCA 44775 .......... .......... .......... .......... .......... .......... 517 GGGTTTTTCA CATGCTTTCC ATTTCTAATT TTTTTTGGTC TTGCGGTAAA CACGCACTGC 44835 .......... .......... .......... .......... .......... .......... 517 CTTTAGGTAT AAAGGAGGAC CAGCATTACC TCGGAAAATG ATATCTGTGG GAGATGCCAA 44895 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTAT AAAGGAGGAC CAGCATTACC TCGGAAAATG ATATCTGTGG GAGATGCCAA 571 GCAACTTAGT GTGGAGGTGT TCCCGTTGTG TCTCAATTTA TTTGATACTA GAGATAAAAG 44955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACTTAGT GTGGAGGTGT TCCCGTTGTG TCTCAATTTA TTTGATACTA GAGATAAAAG 631 C 44956 | C 632 hqPGS_C08HBa0064M21.1+_SGN-E332392+ (40816 40917,41023 41188,43809 44057,44842 44956) ******************************************************************************** EST sequence 5 +strand 591 n (File: SGN-E326036+) 1 TACTTTTCTT TTTTGTAAAT TCAATTTTGA ACTGGAATCT CTCTTCTTAT TGTTTTTTAT 61 TATCATTATT ACTATGTATT GTGTGGATCA TGACGATTCC GGATTCTACC TACATGATGG 121 AAAACGGATC TATTGAATTG CCGTGCACCT CTGAAGAACA GGCAAGGATC ATTCAAGAGC 181 TTATGAGCAA AGCTGAGTCC AATTTGAAAC AACGCAATCT TTTTTATGTT GTTTCTAACA 241 GGTGGTTCAT GGATTGGCAT AGGTACATTA AGAAGCCTCT TGGAGCTTAT CCATTTAACG 301 AGCATGCTAC CGAATCTCTG CATTCTCTTT TACCAAATTC AGCTAATAGA CCTGGACCAA 361 TTGATAATAG CGATATAATA ATTATAGAAG CTGACAGTGG AGATGATGAT CCACAGCTTC 421 TCAGAACTTT GGAAGAACGG CGTGATTATG TGTTGGTCCC ACAAGAAGTA TGGGAGAAGC 481 TCTCTGATTG GTATAAAGGA GGACCAGCAT TACCTCGGAA AATGATATCT GTGGGAGATG 541 CCAAGCAACT TACTGTGGAG GTGTTCCCGA TGTGTCTCAA TTTATTTGAT A Predicted gene structure (within gDNA segment 40348 to 45552): Exon 1 40948 41188 ( 241 n); cDNA 1 241 ( 241 n); score: 0.983 Intron 1 41189 43808 (2620 n); Pd: 0.228 (s: 0.98), Pa: 0.998 (s: 0.94) Exon 2 43809 44057 ( 249 n); cDNA 242 490 ( 249 n); score: 0.976 Intron 2 44058 44841 ( 784 n); Pd: 0.995 (s: 0.98), Pa: 0.982 (s: 1.00) Exon 3 44842 44942 ( 101 n); cDNA 491 591 ( 101 n); score: 0.980 MATCH C08HBa0064M21.1+ SGN-E326036+ 0.980 591 1.000 C PGS_C08HBa0064M21.1+_SGN-E326036+ (40948 41188,43809 44057,44842 44942) Alignment (genomic DNA sequence = upper lines): TACTTTTCTT TTTTGTAAAT TCAATTTTGA ACTGGAATCT CTCTTCTTAT TGTTTTTTAT 41007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTTCTT TTTTGTAAAT TCAATTTTGA ACTGGAATCT CTCTTCTTAT TGTTTTTTAT 60 TATCATTATT ACTAGGTATT GTGTGGATCA TGACGATTCC GGATTCAACC TACATGATGG 41067 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| |||||||||| TATCATTATT ACTATGTATT GTGTGGATCA TGACGATTCC GGATTCTACC TACATGATGG 120 AAAACGGATC TATTGAATTG CCGTGCACCT CTGAAGAAGA GGCAAGGATC ATTCAAGAGC 41127 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AAAACGGATC TATTGAATTG CCGTGCACCT CTGAAGAACA GGCAAGGATC ATTCAAGAGC 180 TTATGAGCAA AGCTGAGTCC AATTTGAAAC AAGGCAATCT TTTTTATGTT GTTTCTAACA 41187 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TTATGAGCAA AGCTGAGTCC AATTTGAAAC AACGCAATCT TTTTTATGTT GTTTCTAACA 240 GGTCTGCTTT TTATTTTGAT GTTCCATTCT AGCAAGCATT GCACCGCGCC ATTTTGTGTT 41247 | G......... .......... .......... .......... .......... .......... 241 TCTTTCTTTC TTTCCTGTTT TTATTTTTGA TTACCTACAA ATTCCCATAG GCGCTCTTCT 41307 .......... .......... .......... .......... .......... .......... 241 CTTGCCATTA GACCAATGCC TTGGGGACAA ATTTCTTTTG CTGCTCACTC ACATCTATCA 41367 .......... .......... .......... .......... .......... .......... 241 GCTAAATAAT TAGGGCTTCT GCCACCATGT TATGTTTGTA GTAAATGAGT TAATGTGCTA 41427 .......... .......... .......... .......... .......... .......... 241 GTTTTCGATA ACTTATCACT ACAAGGTATT TCTTTTTATC AGGTAAAATA TATCATTAAT 41487 .......... .......... .......... .......... .......... .......... 241 ACTAACAAGG TATTTGAATA TTAATTTAAA GAGATTAACC TGATATGAAC TGTTTCGGAA 41547 .......... .......... .......... .......... .......... .......... 241 GTAATTGGGT TATGATATGA CTCATTCTAG TCCATGAATT TTGGTTTTGA AACATTAAAA 41607 .......... .......... .......... .......... .......... .......... 241 ATTTGCTCAA GTTTCCAAGC AGCATATTTT TTTTTTTTTG AAACTAGTAA CTTTAGTCTG 41667 .......... .......... .......... .......... .......... .......... 241 TATATCCACA GGTATACTAC AACAAAAGTG TATTTCCCCT TTAGAAGTGT TACAACTTAC 41727 .......... .......... .......... .......... .......... .......... 241 AGAATAAAAT AGTCTTAGTC TAAACTGTTA CCTATAACTA GGACATCAAA GATATCTTCT 41787 .......... .......... .......... .......... .......... .......... 241 GTCCTAGTTA ATATATCTTG TTCACACCAA AAATAGAAAA GAGCTAAGCA GTCCATCTTG 41847 .......... .......... .......... .......... .......... .......... 241 ATCTTCTGTA AGCTATTCTG CCAATTTTCA AAACTCCTGC TGTTTCTCTC TTTCCAGATT 41907 .......... .......... .......... .......... .......... .......... 241 GTCCACCAAA TACATGCCGA GACAAGTTTC AACCTCTTCT CCTTGTCAGA AGCATTGCCA 41967 .......... .......... .......... .......... .......... .......... 241 TCTCTATTCC AGCTGCTCAA GATTCTTTTG ATGCTCCCTG GTTTCACCCA TCTTATCCCC 42027 .......... .......... .......... .......... .......... .......... 241 TTTAGACAGA TGAACATTTT CCATAATTGT TCTGTCCATG TACAATGCAA AAAAATATGG 42087 .......... .......... .......... .......... .......... .......... 241 TTAATTTGTC TCAGCATGTT CTCCTCATAA ATTACATCTC GAAGCCAACT AATAGCCTCT 42147 .......... .......... .......... .......... .......... .......... 241 TTGCTTTAAA TTTTCATGAG TCAAAACTGC TTCTTTTGTT AATAGCCACA TGAAGCAATT 42207 .......... .......... .......... .......... .......... .......... 241 TACTCTGTAG GGTACTTTTG GTTTCTAGAT GATCTTCCAT GGCCATTCCA TCTCCTGTCC 42267 .......... .......... .......... .......... .......... .......... 241 AGCATTCTTG TTGAGTTCCT TGTACACTGT ATTTACTGAT TGACCTTTGG TATCATTCTG 42327 .......... .......... .......... .......... .......... .......... 241 CCAAACTAAT AAGTCCTTCT TTCCAGTGAG GTTGCTGAAA GAGCCTACTG AATTTTGAAA 42387 .......... .......... .......... .......... .......... .......... 241 TTCTGCCACT TTGTCAATCT CCCAATCCTA AGGTTCCTCC TTAAGAACAA AGGCCATCCT 42447 .......... .......... .......... .......... .......... .......... 241 TGTCCAGTCC ACATTGTATC CACAGTGGCC TGTTGATGTT GGCATAAAGT GAATAATTCA 42507 .......... .......... .......... .......... .......... .......... 241 GGATGTAACT GTTTCATAGG TACAGACCCA TTCCATTTAT CCTCCCAAAA GGATGTCTTT 42567 .......... .......... .......... .......... .......... .......... 241 GACCCATCTC CCACTTCTAC CTTGGTTCTG TGATATAGCA CTGGCCATAG ATTTGTGTAG 42627 .......... .......... .......... .......... .......... .......... 241 TGCATTTATA TGGAGTACTT ATCATTTTAC TCATCCACTT ATCTTCCATG CCATATTTTG 42687 .......... .......... .......... .......... .......... .......... 241 CTATGATGAC CTCTTTCCAG AGCATGTTAT CTCATTTGCA AACTTCCACA ACCACTTCAT 42747 .......... .......... .......... .......... .......... .......... 241 CATTAGGCTC TGGTTTTGTT CCTAAGATTC TTATGCCTTG GCATCTTGTG TTTTTACTCA 42807 .......... .......... .......... .......... .......... .......... 241 CCATCAGTTC TTTCCATTTA ACAAGATGAA ACTTCTTCTT ATCTTCACTG CCTTGCCATA 42867 .......... .......... .......... .......... .......... .......... 241 AGAAATTTCT TCTAAGTGCA TCAATGCTAT TAGATACACT AACAGGCATA GGGAAGACTG 42927 .......... .......... .......... .......... .......... .......... 241 ACATCATATA AGATGGTAAT GTATCCATCA CACTGTTAAT TAAAGTCAAT CTTCCTCCCA 42987 .......... .......... .......... .......... .......... .......... 241 AGGACAAGTA CTGACTCTTC CAGCTGGTGA GTCTCTTTTC ATTATTTCTC CAGTATCCGT 43047 .......... .......... .......... .......... .......... .......... 241 TTCCATGTGC CTTTGGACTT GCTTTTAGCT CCCAAAGGCA TACCTAGGTA AGTAGTTGGA 43107 .......... .......... .......... .......... .......... .......... 241 AGCTCCCCAA TCTTGCCTCC TAGTTTTCTG CTCAAAACTT CTGTATTCAG CAAACTGTTG 43167 .......... .......... .......... .......... .......... .......... 241 ATTGGATAGA TGATAAGTGC TGTTTTCTCA CCTATATTAT ATGTAAGAAA AGGAAGCTAC 43227 .......... .......... .......... .......... .......... .......... 241 TTGAGAAAGA CTCTCTTTGT TCTTCCTCTA GGCAGAATCT ACAACATGAT TAAGCACTAA 43287 .......... .......... .......... .......... .......... .......... 241 GCATATAGAG TTGATAGTTA TGTACCAAGT AAAATCATCA ATGTGAACCT GAATGGGCTG 43347 .......... .......... .......... .......... .......... .......... 241 TACTGGTAAA GAAAGTTTGA GAGCTGAAGT ACTACGTTGA CTATGATTCA TTGGATCTGT 43407 .......... .......... .......... .......... .......... .......... 241 GAAACATTAC CTTAATATTT GTAGAGACCA GGACTGTGAT CTTACTAGAG GCAAATAATG 43467 .......... .......... .......... .......... .......... .......... 241 CCTGGTGGTT TCTTCTTATC TAAGTCATAT GACGCTTCAG CTATTCAGAT CCTCCCCTTT 43527 .......... .......... .......... .......... .......... .......... 241 GTTGCGGTGG CCATTTTGCA ATTTCATTTT ACCTTAAAGA TTGGTGCTCC ATAATATGGT 43587 .......... .......... .......... .......... .......... .......... 241 TACAGATGGA CACTTCAACC AGTTCCAGAT AAGAAATTGA TTTGTTGACT ACTCTGCTGA 43647 .......... .......... .......... .......... .......... .......... 241 CTTCGTAGCT GTTTGATTAT TTCTTCTTTT TTCTGGTCTG ACCTTATGGT ATTTAGGTAG 43707 .......... .......... .......... .......... .......... .......... 241 TTAAGTGTTT TTCCAGTTGC TAAAAAAATA AAAATAAATT AGAACATGTC ATAAAGGAAT 43767 .......... .......... .......... .......... .......... .......... 241 AAACTTGAAA ATTCATGCTC TAATTTTGTC TGTATGTTTA GGTGGTTCAT GGATTGGCAG 43827 ||||||||| ||||||||| .......... .......... .......... .......... .GTGGTTCAT GGATTGGCAT 260 AGGTACATTA GGAAGCCTCT TGGTGCTTAT CCATTTAACG AGCATGCTAC CGAATCTCTG 43887 |||||||||| ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGGTACATTA AGAAGCCTCT TGGAGCTTAT CCATTTAACG AGCATGCTAC CGAATCTCTG 320 CATTCTCTTT TACCAAATTC AGCTAATAGA CCTGGACCAA TTGATAATAG CGATATAATA 43947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCTCTTT TACCAAATTC AGCTAATAGA CCTGGACCAA TTGATAATAG CGATATAATA 380 ATTAGAGAAG CTGACAGTGG AGATGATGAT CCACAGCTTC TCAGAACTTT GGAAGAAGGG 44007 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ATTATAGAAG CTGACAGTGG AGATGATGAT CCACAGCTTC TCAGAACTTT GGAAGAACGG 440 CGTGATTATG TGTTGGTCCC ACAAGAAGTA TGGGAGAAGC TCTCTGAGTG GTAAGGCTTT 44067 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CGTGATTATG TGTTGGTCCC ACAAGAAGTA TGGGAGAAGC TCTCTGATTG .......... 490 CTTGCTTATT TCTCATTCAT CTTTCTTTAT CAGACAGTGC AGTGGAACTT AACTTGGCAA 44127 .......... .......... .......... .......... .......... .......... 490 CACAGCTTAT GGTTTCTGGA AAATACTCCC ATTGTTTGTT CATGAGTAGA AGATACTCGA 44187 .......... .......... .......... .......... .......... .......... 490 TGTTTTGAAG GCATTTTTTG TCGAACAACA GCTATGCAAA ATTCCCCATG ATTTTCTTTT 44247 .......... .......... .......... .......... .......... .......... 490 GTGAACTTCA CTGTTCAGAC AGAGTTGTCT GTGGATGGTT ATGGTCGACT GTCGTGATTA 44307 .......... .......... .......... .......... .......... .......... 490 GAAGTACTAT GCTGTTACTT AATGCCCCCT TTGTTTTAAT TGAAGTATAT TACTTTTCTT 44367 .......... .......... .......... .......... .......... .......... 490 TTTTTGTCCG GTTTCAAAAT GAATGTCTCT TTCTATGTTT GGTCTTCAAT TCCAACTTTC 44427 .......... .......... .......... .......... .......... .......... 490 TACATGATTA AGTAAATGTT GGTCTCTCTT TTTTGACCAT AAGATTCGTA GGCTATTTTG 44487 .......... .......... .......... .......... .......... .......... 490 GTCATTATAC ACTACATGAT TAAAAAATCT CCTTTTCTTA AATTCCATGC CTAGTCAAAC 44547 .......... .......... .......... .......... .......... .......... 490 TTAGACTCTT AAACTAAAAT GGAGTGAGTA TTTTTTTTCT TTATCAGTGG AAGGGGAGCT 44607 .......... .......... .......... .......... .......... .......... 490 GGATTGGATC AGTAGCTCCC CTTCTTTCTA TTTTAGTTAG GGTCTTAAAA AACCCTTTAA 44667 .......... .......... .......... .......... .......... .......... 490 GAGCTGATTG TCAAAAACAT TTACTCTTCC CTGGGATTCA CATGCTATTC TTTTCCCAGG 44727 .......... .......... .......... .......... .......... .......... 490 TACTAGCGTA CATGTTAGTG ATCTGCTAAA ATTGTGAGGG ATTTACCAGG GTTTTTCACA 44787 .......... .......... .......... .......... .......... .......... 490 TGCTTTCCAT TTCTAATTTT TTTTGGTCTT GCGGTAAACA CGCACTGCCT TTAGGTATAA 44847 |||||| .......... .......... .......... .......... .......... ....GTATAA 496 AGGAGGACCA GCATTACCTC GGAAAATGAT ATCTGTGGGA GATGCCAAGC AACTTAGTGT 44907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGGAGGACCA GCATTACCTC GGAAAATGAT ATCTGTGGGA GATGCCAAGC AACTTACTGT 556 GGAGGTGTTC CCGTTGTGTC TCAATTTATT TGATA 44942 |||||||||| ||| |||||| |||||||||| ||||| GGAGGTGTTC CCGATGTGTC TCAATTTATT TGATA 591 hqPGS_C08HBa0064M21.1+_SGN-E326036+ (40948 41188,43809 44057,44842 44942) ******************************************************************************** EST sequence 39 +strand 592 n (File: SGN-E308205+) 1 TGGATATTTC TTCAATGCAT ATCAAGGGAG TTCTTTGAGC TCTACTTATG GGGATATGGA 61 GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 121 ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 181 TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 241 GGGGATGCAT GGTGAGCTTG CACTTGCATT TGGTGAACTA TTGAGGAAAC TATGGTCCTC 301 TGGTCGAACA CCCGTGGCAC CCCGTGCATT CAAGGGAAAA CTTGGTCGAT TTGCTCCCCA 361 GTTTAACGGA TATAACCAGC ATGACTCTCA GGAACTACTC GCCTTCCTCT TGGATGGATT 421 ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG ACTCAGACGG 481 TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAAATAC CACANANCCA GAAATGACTC 541 TGTTATAGTT GATATTTGCC AGGGCCAATA TAAATCTACG CTGGTTTGCC CT Predicted gene structure (within gDNA segment 45511 to 48051): Exon 1 46219 46468 ( 250 n); cDNA 1 250 ( 250 n); score: 0.976 Intron 1 46469 46556 ( 88 n); Pd: 0.950 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 2 46557 46697 ( 141 n); cDNA 251 391 ( 141 n); score: 0.993 Intron 2 46698 46979 ( 282 n); Pd: 0.346 (s: 0.98), Pa: 0.899 (s: 1.00) Exon 3 46980 47150 ( 171 n); cDNA 392 562 ( 171 n); score: 0.982 Intron 3 47151 47467 ( 317 n); Pd: 0.946 (s: 0.94), Pa: 0.014 (s: 0) Exon 4 47468 47497 ( 30 n); cDNA 563 592 ( 30 n); score: 0.967 MATCH C08HBa0064M21.1+ SGN-E308205+ 0.982 592 1.000 C PGS_C08HBa0064M21.1+_SGN-E308205+ (46219 46468,46557 46697,46980 47150,47468 47497) Alignment (genomic DNA sequence = upper lines): TGGATATAGC TCCAATGCAT ATCAAGGGAG TTCTTTGAAC TCTAGTTATG GCGATATGGA 46278 ||||||| | | |||||||| |||||||||| |||||||| | |||| ||||| | |||||||| TGGATATTTC TTCAATGCAT ATCAAGGGAG TTCTTTGAGC TCTACTTATG GGGATATGGA 60 GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 46338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 120 ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 46398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 180 TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 46458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 240 GGGGATGCAT GTAATGTTGC TTCTTTTGTC TATGTTGTGA ACTTTTCGTA TGGAAGAGAT 46518 |||||||||| GGGGATGCAT .......... .......... .......... .......... .......... 250 TTATATTCAA GTTTCTAATA TCTGTTGTAG TTTTACAGGG TGAGCTTGCA CTTGCATTTG 46578 || |||||||||| |||||||||| .......... .......... .......... ........GG TGAGCTTGCA CTTGCATTTG 272 GTGAACTATT GAGGAAACTA TGGTCCTCTG GTCGAACACC CGTGGCACCC CGTGCATTCA 46638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACTATT GAGGAAACTA TGGTCCTCTG GTCGAACACC CGTGGCACCC CGTGCATTCA 332 AGGGAAAACT TGGTCGATTT GCTCCCCAGT TTAGCGGATA TAACCAGCAT GACTCTCAGG 46698 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| AGGGAAAACT TGGTCGATTT GCTCCCCAGT TTAACGGATA TAACCAGCAT GACTCTCAG. 391 TTGGTTTGGC TCGTCTTGGC TGAGATTGTC ATATTTTCCA CAGGGTTTGC TCAATGCTAA 46758 .......... .......... .......... .......... .......... .......... 391 TTTTGGTCTT TAGGAATGCT TCTGTATCAT CTGATAATAA ATGTACCATG TATTAGCTAC 46818 .......... .......... .......... .......... .......... .......... 391 TTGTAGAGCC TGTTGTTTTT TGTTGCTAGA ATATTGCGGG TAGTTTTTCC CACTATAGGC 46878 .......... .......... .......... .......... .......... .......... 391 AGGGCCTTAA GTTCATATGT TTCCTTTACC TATATGTTCG GAAACACATT TCTCTTGAAA 46938 .......... .......... .......... .......... .......... .......... 391 TGCTGCTAGA TTTTCAGTAA GTGATATGCT TCTATTTATA GGAACTACTC GCCTTCCTCT 46998 ||||||||| |||||||||| .......... .......... .......... .......... .GAACTACTC GCCTTCCTCT 410 TGGATGGATT ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG 47058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGGATT ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG 470 ACTCAGACGG TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAGATAC CACAGAGCCA 47118 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||| | ||| ACTCAGACGG TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAAATAC CACANANCCA 530 GAAATGACTC TGTTATAGTT GATATTTGCC AGGTTCTTAG CTTTTTGTCA TTTTCTTTCT 47178 |||||||||| |||||||||| |||||||||| || GAAATGACTC TGTTATAGTT GATATTTGCC AG........ .......... .......... 562 TTATCGACTG GGACTGTCTT GATTGACCTT TATGCAAGTG GTTTTATATT TTTAGTCCTG 47238 .......... .......... .......... .......... .......... .......... 562 GGAATTGTTA TTATCTTTTT CTTTTTCTCT TCCCTATGTC AGCTTGAGTT CGACACTTAC 47298 .......... .......... .......... .......... .......... .......... 562 TGGAGGCTGA TAGTCACTTT TTTTTTCTTT CTGGTGACAA AGGCTATTTC ACTTCCAGTA 47358 .......... .......... .......... .......... .......... .......... 562 ATGTTTGGAT AGAACTTTGT TGGGATATAA CGCATCTGAA ATTGATGTTT GTTTTCTTGT 47418 .......... .......... .......... .......... .......... .......... 562 TAGTGCATAT GGCCATCAAG TTCACTCATA CTGAAGCTAT TTATTTCAGG GCCAATATAA 47478 | |||||||||| .......... .......... .......... .......... .........G GCCAATATAA 573 GTCTACGCTG GTTTGCCCT 47497 ||||||||| ||||||||| ATCTACGCTG GTTTGCCCT 592 hqPGS_C08HBa0064M21.1+_SGN-E308205+ (46219 46468,46557 46697,46980 47150,47468 47497) ******************************************************************************** EST sequence 38 +strand 559 n (File: SGN-E308065+) 1 TGGATATAGC TCCAATGCAT ATCAAGGGAG TTCTTTGAAC TCTAGTTATG GCGATATGGA 61 GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 121 ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 181 TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 241 GGGGATGCAT GGTGAGCTTG CACTTGCATT TGGTGAACTA TTGAGGAAAC TATGGTCCTC 301 TGGTCGAACA CCCGTGGCAC CCCGTGCATT CAAGGGAAAA CTTGGTCGAT TTGCTCCCCA 361 GTTTAGCGGA TATAACCAGC ATGACTCTCA GGAACTACTC GCCTTCCTCT TGGATGGATT 421 ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG ACTCAGACGG 481 TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAGATAC CACAGAGCCA GAAATGACTC 541 TGTTATAGTT GATATTTGC Predicted gene structure (within gDNA segment 45619 to 47757): Exon 1 46219 46468 ( 250 n); cDNA 1 250 ( 250 n); score: 1.000 Intron 1 46469 46556 ( 88 n); Pd: 0.950 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 2 46557 46697 ( 141 n); cDNA 251 391 ( 141 n); score: 1.000 Intron 2 46698 46979 ( 282 n); Pd: 0.346 (s: 1.00), Pa: 0.899 (s: 1.00) Exon 3 46980 47147 ( 168 n); cDNA 392 559 ( 168 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E308065+ 1.000 559 1.000 C PGS_C08HBa0064M21.1+_SGN-E308065+ (46219 46468,46557 46697,46980 47147) Alignment (genomic DNA sequence = upper lines): TGGATATAGC TCCAATGCAT ATCAAGGGAG TTCTTTGAAC TCTAGTTATG GCGATATGGA 46278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATATAGC TCCAATGCAT ATCAAGGGAG TTCTTTGAAC TCTAGTTATG GCGATATGGA 60 GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 46338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGGATAT GATAGTCTGA GGCCTGCAAG TAAAGGCGAA AGGGGAGGGT TGGCAGGATT 120 ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 46398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAATCTG GGAAACACAT GCTTCATGAA TAGTGCACTT CAGTGTCTGG TTCATACACC 180 TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 46458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCTCGTC GAATACTTCT TGCAAGATTA CACTGATGAG ATTAACAGAC AGAATCCTTT 240 GGGGATGCAT GTAATGTTGC TTCTTTTGTC TATGTTGTGA ACTTTTCGTA TGGAAGAGAT 46518 |||||||||| GGGGATGCAT .......... .......... .......... .......... .......... 250 TTATATTCAA GTTTCTAATA TCTGTTGTAG TTTTACAGGG TGAGCTTGCA CTTGCATTTG 46578 || |||||||||| |||||||||| .......... .......... .......... ........GG TGAGCTTGCA CTTGCATTTG 272 GTGAACTATT GAGGAAACTA TGGTCCTCTG GTCGAACACC CGTGGCACCC CGTGCATTCA 46638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACTATT GAGGAAACTA TGGTCCTCTG GTCGAACACC CGTGGCACCC CGTGCATTCA 332 AGGGAAAACT TGGTCGATTT GCTCCCCAGT TTAGCGGATA TAACCAGCAT GACTCTCAGG 46698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGGGAAAACT TGGTCGATTT GCTCCCCAGT TTAGCGGATA TAACCAGCAT GACTCTCAG. 391 TTGGTTTGGC TCGTCTTGGC TGAGATTGTC ATATTTTCCA CAGGGTTTGC TCAATGCTAA 46758 .......... .......... .......... .......... .......... .......... 391 TTTTGGTCTT TAGGAATGCT TCTGTATCAT CTGATAATAA ATGTACCATG TATTAGCTAC 46818 .......... .......... .......... .......... .......... .......... 391 TTGTAGAGCC TGTTGTTTTT TGTTGCTAGA ATATTGCGGG TAGTTTTTCC CACTATAGGC 46878 .......... .......... .......... .......... .......... .......... 391 AGGGCCTTAA GTTCATATGT TTCCTTTACC TATATGTTCG GAAACACATT TCTCTTGAAA 46938 .......... .......... .......... .......... .......... .......... 391 TGCTGCTAGA TTTTCAGTAA GTGATATGCT TCTATTTATA GGAACTACTC GCCTTCCTCT 46998 ||||||||| |||||||||| .......... .......... .......... .......... .GAACTACTC GCCTTCCTCT 410 TGGATGGATT ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG 47058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGGATT ACATGAAGAT TTAAATCGCG TCAAGCAAAA GCCGTATTTT GAGACAAAGG 470 ACTCAGACGG TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAGATAC CACAGAGCCA 47118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCAGACGG TCGTCCAGAT GAAGAAGTTG CTAACGAGCT TTGGAGATAC CACAGAGCCA 530 GAAATGACTC TGTTATAGTT GATATTTGC 47147 |||||||||| |||||||||| ||||||||| GAAATGACTC TGTTATAGTT GATATTTGC 559 hqPGS_C08HBa0064M21.1+_SGN-E308065+ (46219 46468,46557 46697,46980 47147) ******************************************************************************** EST sequence 77 +strand 725 n (File: SGN-E260989+) 1 GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 61 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 121 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 181 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 241 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 301 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 361 GAGGAACCTT TAGGACCAGA TGATATGTGG TACTGTCCTC GCTGCAAGGA GCATAGACAA 421 GCCTCCAAGA AGTTAGATCT ATGGAGATTA CCGGACATAC TTGTTTTCCA CTTAAAGCGG 481 TTCTCTTATA GCCGATGGCT GAAGAACAAG CTTGATACGT TTGTGAATTT TCCCATACAT 541 AATCTGGATT TAAGCAAGTA TGTGAAAAGT ACGGATTTAT CTGAGAGCTC CCATGTGTAT 601 GAGCTATATG CAATAAGCAA CCATTATGGT GGACTAGGTG GTGGGCATTA CACAGCTTAC 661 TGTAAGTTGA TTGATGACGA CAGATGGTAT CATTTTGATG ATTCCCATGT TTCACCTGTT 721 GCTGA Predicted gene structure (within gDNA segment 48048 to 50268): Exon 1 48648 49036 ( 389 n); cDNA 1 389 ( 389 n); score: 1.000 Intron 1 49037 49114 ( 78 n); Pd: 0.938 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49115 49391 ( 277 n); cDNA 390 666 ( 277 n); score: 1.000 Intron 2 49392 49599 ( 208 n); Pd: 0.997 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 49600 49658 ( 59 n); cDNA 667 725 ( 59 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E260989+ 1.000 725 1.000 C PGS_C08HBa0064M21.1+_SGN-E260989+ (48648 49036,49115 49391,49600 49658) Alignment (genomic DNA sequence = upper lines): GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 48707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 60 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 48767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 120 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 48827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 180 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 48887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 240 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 48947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 300 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 49007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 360 GAGGAACCTT TAGGACCAGA TGATATGTGG TATGTCATGA GATGTTTTCT TTTAAGTTTT 49067 |||||||||| |||||||||| ||||||||| GAGGAACCTT TAGGACCAGA TGATATGTG. .......... .......... .......... 389 GTCCACTTGA TGTGGATTTT AAGTGTATGT TTATGATTTT AATTCAGGTA CTGTCCTCGC 49127 ||| |||||||||| .......... .......... .......... .......... .......GTA CTGTCCTCGC 402 TGCAAGGAGC ATAGACAAGC CTCCAAGAAG TTAGATCTAT GGAGATTACC GGACATACTT 49187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAGGAGC ATAGACAAGC CTCCAAGAAG TTAGATCTAT GGAGATTACC GGACATACTT 462 GTTTTCCACT TAAAGCGGTT CTCTTATAGC CGATGGCTGA AGAACAAGCT TGATACGTTT 49247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCCACT TAAAGCGGTT CTCTTATAGC CGATGGCTGA AGAACAAGCT TGATACGTTT 522 GTGAATTTTC CCATACATAA TCTGGATTTA AGCAAGTATG TGAAAAGTAC GGATTTATCT 49307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATTTTC CCATACATAA TCTGGATTTA AGCAAGTATG TGAAAAGTAC GGATTTATCT 582 GAGAGCTCCC ATGTGTATGA GCTATATGCA ATAAGCAACC ATTATGGTGG ACTAGGTGGT 49367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCTCCC ATGTGTATGA GCTATATGCA ATAAGCAACC ATTATGGTGG ACTAGGTGGT 642 GGGCATTACA CAGCTTACTG TAAGGTACTT TTTATTTTGT CTTGTTCTCT TGTTGAATAT 49427 |||||||||| |||||||||| |||| GGGCATTACA CAGCTTACTG TAAG...... .......... .......... .......... 666 TGTAATTGCT AACTAGAATA TATTCTTCTT GAGATAGCAA GAAATCAGGA GCTGTTAATA 49487 .......... .......... .......... .......... .......... .......... 666 TACTATAGTG AGAATATTGA ACTGAATCTC GGCCAAGGGG GTCGTATGGT CTTGGTTGAC 49547 .......... .......... .......... .......... .......... .......... 666 TGTAGGTTCA TTGTATACTT GCAAACAACT GATGGGTTCT TTTAATTGGC AGTTGATTGA 49607 |||||||| .......... .......... .......... .......... .......... ..TTGATTGA 674 TGACGACAGA TGGTATCATT TTGATGATTC CCATGTTTCA CCTGTTGCTG A 49658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGACGACAGA TGGTATCATT TTGATGATTC CCATGTTTCA CCTGTTGCTG A 725 hqPGS_C08HBa0064M21.1+_SGN-E260989+ (48648 49036,49115 49391,49600 49658) ******************************************************************************** EST sequence 30 +strand 569 n (File: SGN-E253980+) 1 GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGGTGCAC TATCCAATTT 61 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 121 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 181 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 241 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 301 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 361 GAGGAACCTT TAGGACCAGA TGATATGTGG TACTGTCCTC GCTGCAAGGA GCATAGACAA 421 GCCTCCAAGA AGTTAGATCT ATGGAGATTA CCGGACATAC TTGTTTTCCA CTTAAAGCGG 481 TTCTCTTATA GCCGATGGCT GAAGAACAAG CTTGATACGT TTGTGAATTT TCCCATACAT 541 AATCTGGATT TAAGCAAGTA TGTGAAAAG Predicted gene structure (within gDNA segment 48048 to 49904): Exon 1 48648 49036 ( 389 n); cDNA 1 389 ( 389 n); score: 0.997 Intron 1 49037 49114 ( 78 n); Pd: 0.938 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49115 49294 ( 180 n); cDNA 390 569 ( 180 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E253980+ 0.998 569 1.000 C PGS_C08HBa0064M21.1+_SGN-E253980+ (48648 49036,49115 49294) Alignment (genomic DNA sequence = upper lines): GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 48707 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGGTGCAC TATCCAATTT 60 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 48767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 120 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 48827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 180 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 48887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 240 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 48947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 300 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 49007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 360 GAGGAACCTT TAGGACCAGA TGATATGTGG TATGTCATGA GATGTTTTCT TTTAAGTTTT 49067 |||||||||| |||||||||| ||||||||| GAGGAACCTT TAGGACCAGA TGATATGTG. .......... .......... .......... 389 GTCCACTTGA TGTGGATTTT AAGTGTATGT TTATGATTTT AATTCAGGTA CTGTCCTCGC 49127 ||| |||||||||| .......... .......... .......... .......... .......GTA CTGTCCTCGC 402 TGCAAGGAGC ATAGACAAGC CTCCAAGAAG TTAGATCTAT GGAGATTACC GGACATACTT 49187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAGGAGC ATAGACAAGC CTCCAAGAAG TTAGATCTAT GGAGATTACC GGACATACTT 462 GTTTTCCACT TAAAGCGGTT CTCTTATAGC CGATGGCTGA AGAACAAGCT TGATACGTTT 49247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCCACT TAAAGCGGTT CTCTTATAGC CGATGGCTGA AGAACAAGCT TGATACGTTT 522 GTGAATTTTC CCATACATAA TCTGGATTTA AGCAAGTATG TGAAAAG 49294 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTGAATTTTC CCATACATAA TCTGGATTTA AGCAAGTATG TGAAAAG 569 hqPGS_C08HBa0064M21.1+_SGN-E253980+ (48648 49036,49115 49294) ******************************************************************************** EST sequence 57 +strand 459 n (File: SGN-E259162+) 1 GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 61 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 121 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 181 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 241 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 301 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 361 GAGGAACCTT TANGACCAGA TGATATGTGG TACTGTCCTC GCTGCAAGGA GCATAGACAA 421 GCCTCCAAGA AGTAGATCTA TGGAGATTAC CGGACATAC Predicted gene structure (within gDNA segment 48048 to 49795): Exon 1 48648 49036 ( 389 n); cDNA 1 389 ( 389 n); score: 0.997 Intron 1 49037 49114 ( 78 n); Pd: 0.938 (s: 0.98), Pa: 0.999 (s: 0.98) Exon 2 49115 49185 ( 71 n); cDNA 390 459 ( 70 n); score: 0.986 MATCH C08HBa0064M21.1+ SGN-E259162+ 0.996 460 1.002 C PGS_C08HBa0064M21.1+_SGN-E259162+ (48648 49036,49115 49185) Alignment (genomic DNA sequence = upper lines): GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 48707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 60 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 48767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 120 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 48827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 180 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 48887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 240 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 48947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACAAAAG TGGACTTACA 300 GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 49007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGAAAA CCAAGCAAGA AGCTATATCC TTATTTTCGT GTTTGGAGGC CTTCCTAAAG 360 GAGGAACCTT TAGGACCAGA TGATATGTGG TATGTCATGA GATGTTTTCT TTTAAGTTTT 49067 |||||||||| || ||||||| ||||||||| GAGGAACCTT TANGACCAGA TGATATGTG. .......... .......... .......... 389 GTCCACTTGA TGTGGATTTT AAGTGTATGT TTATGATTTT AATTCAGGTA CTGTCCTCGC 49127 ||| |||||||||| .......... .......... .......... .......... .......GTA CTGTCCTCGC 402 TGCAAGGAGC ATAGACAAGC CTCCAAGAAG TTAGATCTAT GGAGATTACC GGACATAC 49185 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||| TGCAAGGAGC ATAGACAAGC CTCCAAGAAG -TAGATCTAT GGAGATTACC GGACATAC 459 hqPGS_C08HBa0064M21.1+_SGN-E259162+ (48648 49036,49115 49185) ******************************************************************************** EST sequence 52 +strand 444 n (File: SGN-E207184+) 1 CAGCATGGAG CTGACATTTC ATCTTTGTTT AACTGATGAA CGGGGTACTA ACTGCAGGCC 61 CGTTGCAAAA GATACGGTGA TTGAACCAGT TAGAATGCAA AAGGTTATAT TGGATTGGAC 121 TGAGAAGGAA TATGAGCTAT ATGATGCGAG CTACCTCAAA GACCTTCCAG AGGTTCACAA 181 AAGTGGACTT ACAGTGAAGA AAACCAAGCA AGAAGCTATA TCCTTATTTT CGTGTTTGGA 241 GGCCTTCCTA AAGGAGGAAC CTTTAGGACC AGATGATATG TGGTACTGTC CTCGCTGCAA 301 GGAGCATAGA CAAGCCTCCA AGAAGTTAGA TCTATGGAGA TTACCGGACA TACTTGTTTT 361 CCACTTAAAG CGGTTCTCTT ATAGCCGATG GCTGAAGAAC AAGCTTGATA CGTTTGTGAA 421 TTTTCCCATA CATAATCTGG ATTT Predicted gene structure (within gDNA segment 48155 to 49886): Exon 1 48755 49036 ( 282 n); cDNA 1 282 ( 282 n); score: 1.000 Intron 1 49037 49114 ( 78 n); Pd: 0.938 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49115 49276 ( 162 n); cDNA 283 444 ( 162 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E207184+ 1.000 444 1.000 C PGS_C08HBa0064M21.1+_SGN-E207184+ (48755 49036,49115 49276) Alignment (genomic DNA sequence = upper lines): CAGCATGGAG CTGACATTTC ATCTTTGTTT AACTGATGAA CGGGGTACTA ACTGCAGGCC 48814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCATGGAG CTGACATTTC ATCTTTGTTT AACTGATGAA CGGGGTACTA ACTGCAGGCC 60 CGTTGCAAAA GATACGGTGA TTGAACCAGT TAGAATGCAA AAGGTTATAT TGGATTGGAC 48874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTGCAAAA GATACGGTGA TTGAACCAGT TAGAATGCAA AAGGTTATAT TGGATTGGAC 120 TGAGAAGGAA TATGAGCTAT ATGATGCGAG CTACCTCAAA GACCTTCCAG AGGTTCACAA 48934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAAGGAA TATGAGCTAT ATGATGCGAG CTACCTCAAA GACCTTCCAG AGGTTCACAA 180 AAGTGGACTT ACAGTGAAGA AAACCAAGCA AGAAGCTATA TCCTTATTTT CGTGTTTGGA 48994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGACTT ACAGTGAAGA AAACCAAGCA AGAAGCTATA TCCTTATTTT CGTGTTTGGA 240 GGCCTTCCTA AAGGAGGAAC CTTTAGGACC AGATGATATG TGGTATGTCA TGAGATGTTT 49054 |||||||||| |||||||||| |||||||||| |||||||||| || GGCCTTCCTA AAGGAGGAAC CTTTAGGACC AGATGATATG TG........ .......... 282 TCTTTTAAGT TTTGTCCACT TGATGTGGAT TTTAAGTGTA TGTTTATGAT TTTAATTCAG 49114 .......... .......... .......... .......... .......... .......... 282 GTACTGTCCT CGCTGCAAGG AGCATAGACA AGCCTCCAAG AAGTTAGATC TATGGAGATT 49174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTGTCCT CGCTGCAAGG AGCATAGACA AGCCTCCAAG AAGTTAGATC TATGGAGATT 342 ACCGGACATA CTTGTTTTCC ACTTAAAGCG GTTCTCTTAT AGCCGATGGC TGAAGAACAA 49234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGACATA CTTGTTTTCC ACTTAAAGCG GTTCTCTTAT AGCCGATGGC TGAAGAACAA 402 GCTTGATACG TTTGTGAATT TTCCCATACA TAATCTGGAT TT 49276 |||||||||| |||||||||| |||||||||| |||||||||| || GCTTGATACG TTTGTGAATT TTCCCATACA TAATCTGGAT TT 444 hqPGS_C08HBa0064M21.1+_SGN-E207184+ (48755 49036,49115 49276) ******************************************************************************** EST sequence 19 +strand 681 n (File: SGN-E339860+) 1 AAAAGGTTAT ATTGGATTGG ACTGAGAAGG AATATGAGCT ATATGATGCG AGCTACCTCA 61 AAGACCTTCC AGAGGTTCAC AAAAGTGGAC TTACAGTGAA GAAAACCAAG CAAGAAGCTA 121 TATCCTTATT TTCGTGTTTG GAGGCCTTCC TAAAGGAGGA ACCTTTAGGA CCAGATGATA 181 TGTGGTACTG TCCTCGCTGC AAGGAGCATA GACAAGCCTC CAAGAAGTTA GATCTATGGA 241 GATTACCGGA CATACTTGTT TTCCACTTAA AGCGGTTCTC TTATAGCCGA TGGCTGAAGA 301 ACAAGCTTGA TACGTTTGTG AATTTTCCCA TACATAATCT GGATTTAAGC AAGTATGTGA 361 AAAGTACGGA TTTATCTGAG AGCTCCCATG TGTATGAGCT ATATGCAATA AGCAACCATT 421 ATGGTGGACT AGGTGGTGGG CATTACACAG CTTACTGTAA GTTGATTGAT GACGACAGAT 481 GGTATCATTT TGATGATTCC CATGTTTCAC CTGTTGCTGA ATCGGATATC AAAACATCAG 541 CTGCCTACGT GTTGTTCTAT CGAAGAGTTA AAGCTCAACA AGATGGAGTT GTGGGGAGGG 601 TCCTATCAGT GCCATAGAAG CTCTTGAAAA TGCTCGACTG GTATCTCTTA TCCCCACTTG 661 ATAAGGTCTG AATTCTTGGC T Predicted gene structure (within gDNA segment 48253 to 50428): Exon 1 48853 49036 ( 184 n); cDNA 1 184 ( 184 n); score: 1.000 Intron 1 49037 49114 ( 78 n); Pd: 0.938 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49115 49391 ( 277 n); cDNA 185 461 ( 277 n); score: 1.000 Intron 2 49392 49599 ( 208 n); Pd: 0.997 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 49600 49818 ( 219 n); cDNA 462 681 ( 220 n); score: 0.989 MATCH C08HBa0064M21.1+ SGN-E339860+ 0.996 680 0.999 C PGS_C08HBa0064M21.1+_SGN-E339860+ (48853 49036,49115 49391,49600 49818) Alignment (genomic DNA sequence = upper lines): AAAAGGTTAT ATTGGATTGG ACTGAGAAGG AATATGAGCT ATATGATGCG AGCTACCTCA 48912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGTTAT ATTGGATTGG ACTGAGAAGG AATATGAGCT ATATGATGCG AGCTACCTCA 60 AAGACCTTCC AGAGGTTCAC AAAAGTGGAC TTACAGTGAA GAAAACCAAG CAAGAAGCTA 48972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACCTTCC AGAGGTTCAC AAAAGTGGAC TTACAGTGAA GAAAACCAAG CAAGAAGCTA 120 TATCCTTATT TTCGTGTTTG GAGGCCTTCC TAAAGGAGGA ACCTTTAGGA CCAGATGATA 49032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTTATT TTCGTGTTTG GAGGCCTTCC TAAAGGAGGA ACCTTTAGGA CCAGATGATA 180 TGTGGTATGT CATGAGATGT TTTCTTTTAA GTTTTGTCCA CTTGATGTGG ATTTTAAGTG 49092 |||| TGTG...... .......... .......... .......... .......... .......... 184 TATGTTTATG ATTTTAATTC AGGTACTGTC CTCGCTGCAA GGAGCATAGA CAAGCCTCCA 49152 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTACTGTC CTCGCTGCAA GGAGCATAGA CAAGCCTCCA 222 AGAAGTTAGA TCTATGGAGA TTACCGGACA TACTTGTTTT CCACTTAAAG CGGTTCTCTT 49212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTAGA TCTATGGAGA TTACCGGACA TACTTGTTTT CCACTTAAAG CGGTTCTCTT 282 ATAGCCGATG GCTGAAGAAC AAGCTTGATA CGTTTGTGAA TTTTCCCATA CATAATCTGG 49272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCCGATG GCTGAAGAAC AAGCTTGATA CGTTTGTGAA TTTTCCCATA CATAATCTGG 342 ATTTAAGCAA GTATGTGAAA AGTACGGATT TATCTGAGAG CTCCCATGTG TATGAGCTAT 49332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAAGCAA GTATGTGAAA AGTACGGATT TATCTGAGAG CTCCCATGTG TATGAGCTAT 402 ATGCAATAAG CAACCATTAT GGTGGACTAG GTGGTGGGCA TTACACAGCT TACTGTAAGG 49392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATGCAATAAG CAACCATTAT GGTGGACTAG GTGGTGGGCA TTACACAGCT TACTGTAAG. 461 TACTTTTTAT TTTGTCTTGT TCTCTTGTTG AATATTGTAA TTGCTAACTA GAATATATTC 49452 .......... .......... .......... .......... .......... .......... 461 TTCTTGAGAT AGCAAGAAAT CAGGAGCTGT TAATATACTA TAGTGAGAAT ATTGAACTGA 49512 .......... .......... .......... .......... .......... .......... 461 ATCTCGGCCA AGGGGGTCGT ATGGTCTTGG TTGACTGTAG GTTCATTGTA TACTTGCAAA 49572 .......... .......... .......... .......... .......... .......... 461 CAACTGATGG GTTCTTTTAA TTGGCAGTTG ATTGATGACG ACAGATGGTA TCATTTTGAT 49632 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TTG ATTGATGACG ACAGATGGTA TCATTTTGAT 494 GATTCCCATG TTTCACCTGT TGCTGAATCG GATATCAAAA CATCAGCTGC CTACGTGTTG 49692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCCATG TTTCACCTGT TGCTGAATCG GATATCAAAA CATCAGCTGC CTACGTGTTG 554 TTCTATCGAA GAGTTAAAGC TCAACAAGAT GGAGTTGT-G GGAGGGTCCT ATCAGTGCCA 49751 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTCTATCGAA GAGTTAAAGC TCAACAAGAT GGAGTTGTGG GGAGGGTCCT ATCAGTGCCA 614 TAGAAGCTCT TGAAAATGCT CGACTGGTAT CTCTTATCCC CACTTGATAA GGTCTGAATT 49811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGCTCT TGAAAATGCT CGACTGGTAT CTCTTATCCC CACTTGATAA GGTCTGAATT 674 CTTGGCT 49818 ||||||| CTTGGCT 681 hqPGS_C08HBa0064M21.1+_SGN-E339860+ (48853 49036,49115 49391,49600 49818) ******************************************************************************** EST sequence 75 +strand 286 n (File: SGN-E370110+) 1 GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 61 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 121 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 181 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA TAATGTATAT 241 GAGCTATATT ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG ATCACA Predicted gene structure (within gDNA segment 48048 to 49597): Exon 1 48648 48933 ( 286 n); cDNA 1 286 ( 286 n); score: 0.983 MATCH C08HBa0064M21.1+ SGN-E370110+ 0.983 286 1.000 C PGS_C08HBa0064M21.1+_SGN-E370110+ (48648 48933) Alignment (genomic DNA sequence = upper lines): GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 48707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGGTT CTCCCTCGGA AACAATTGAA GTACCAATGA ACAGCTGCAC TATCCAATTT 60 GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 48767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTGAAG GTCAATCAAC AGAGTGCATA GATCCAGTGG GGAATTCCAG CATGGAGCTG 120 ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 48827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTCATC TTTGTTTAAC TGATGAACGG GGTACTAACT GCAGGCCCGT TGCAAAAGAT 180 ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA GAAGGAATAT 48887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || | |||| ACGGTGATTG AACCAGTTAG AATGCAAAAG GTTATATTGG ATTGGACTGA TAATGTATAT 240 GAGCTATATG ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG TTCACA 48933 ||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGCTATATT ATGCGAGCTA CCTCAAAGAC CTTCCAGAGG ATCACA 286 hqPGS_C08HBa0064M21.1+_SGN-E370110+ (48648 48933) ******************************************************************************** EST sequence 37 +strand 315 n (File: SGN-E251540+) 1 TTGTGAAGGT CAATCAACAG ACTGCATAGA TCCAGTGGGG AATTCCAGCA TGGAGCTGAC 61 ATTTCATCTT TGTTTAACTG ATGAACGGGG TACTAACTGC AGGCCCTTAG CAAAAGATAC 121 GGTGATTGAA CCAGTTAGAA TGCAAAAGGT TATATTGGAT TGGACTGAGA AGGAATATGA 181 GCTATATGAT GCGAGCTACC TCAAAGACCT TCCAGAGGTT CACAAAAGTG GACTTACAGT 241 GAAGAAAACC AAGCAAGAAG CTATATCCTT ATTTTCGTGT TTGGAGGTCT TCCTAAAGGA 301 GGAACCTTTA GGACC Predicted gene structure (within gDNA segment 48110 to 49634): Exon 1 48710 49024 ( 315 n); cDNA 1 315 ( 315 n); score: 0.987 MATCH C08HBa0064M21.1+ SGN-E251540+ 0.987 315 1.000 C PGS_C08HBa0064M21.1+_SGN-E251540+ (48710 49024) Alignment (genomic DNA sequence = upper lines): TTGTGAAGGT CAATCAACAG AGTGCATAGA TCCAGTGGGG AATTCCAGCA TGGAGCTGAC 48769 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTGTGAAGGT CAATCAACAG ACTGCATAGA TCCAGTGGGG AATTCCAGCA TGGAGCTGAC 60 ATTTCATCTT TGTTTAACTG ATGAACGGGG TACTAACTGC AGGCCCGTTG CAAAAGATAC 48829 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | |||||||||| ATTTCATCTT TGTTTAACTG ATGAACGGGG TACTAACTGC AGGCCCTTAG CAAAAGATAC 120 GGTGATTGAA CCAGTTAGAA TGCAAAAGGT TATATTGGAT TGGACTGAGA AGGAATATGA 48889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATTGAA CCAGTTAGAA TGCAAAAGGT TATATTGGAT TGGACTGAGA AGGAATATGA 180 GCTATATGAT GCGAGCTACC TCAAAGACCT TCCAGAGGTT CACAAAAGTG GACTTACAGT 48949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATATGAT GCGAGCTACC TCAAAGACCT TCCAGAGGTT CACAAAAGTG GACTTACAGT 240 GAAGAAAACC AAGCAAGAAG CTATATCCTT ATTTTCGTGT TTGGAGGCCT TCCTAAAGGA 49009 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GAAGAAAACC AAGCAAGAAG CTATATCCTT ATTTTCGTGT TTGGAGGTCT TCCTAAAGGA 300 GGAACCTTTA GGACC 49024 |||||||||| ||||| GGAACCTTTA GGACC 315 hqPGS_C08HBa0064M21.1+_SGN-E251540+ (48710 49024) ******************************************************************************** EST sequence 56 +strand 516 n (File: SGN-E354502+) 1 CACAGCTTAC TGTAAGTTGA TTGATGACGA CAGATGGTAT CATTTTGATG ATTCCCATGT 61 TTCACCTGTT GCTGAATCGG ATATCAAAAC ATCAGCTGCC TACGTGTTGT TCTATCGAAG 121 AGTTAAAGCT CAACAAGATG GAGTTGTGGG AGGGTCCTAT CAGTGCCATA GAAGCTCTTG 181 AAAATGCTCG ACTGGTATCT CTTATCCCCA CTTGATAAGG TCTGAATTCT TGGCTGTCCG 241 GCAGGGGGCT AACGTGGTTG GGGCTCATCT TATCCCTAGG TAAATTAGAA GTAGGTGCTC 301 TATCAGTAAG AGGCGCACCA AGAGGAAAAC AGAAATTGGA TGAGGCTCTA GTGTCTTTTT 361 TTAAGAGAAA TTTTGTAAGT CTTGGGTATC CGTATTAGGC ATTATACTCT TGTAGAGTAG 421 TAGTGTTCTT ATCATTTTTT AGTGAAGAAG TTGTACTCAA GGACCAGGCC TTCTTTTTTT 481 AAATCTAATT ACATATAGCA GCATGAGAGT TTGATG Predicted gene structure (within gDNA segment 48858 to 50709): Exon 1 49376 49391 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 49392 49599 ( 208 n); Pd: 0.997 (s: 0), Pa: 0.994 (s: 1.00) Exon 2 49600 50099 ( 500 n); cDNA 17 516 ( 500 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E354502+ 1.000 516 1.000 C PGS_C08HBa0064M21.1+_SGN-E354502+ (49376 49391,49600 50099) Alignment (genomic DNA sequence = upper lines): CACAGCTTAC TGTAAGGTAC TTTTTATTTT GTCTTGTTCT CTTGTTGAAT ATTGTAATTG 49435 |||||||||| |||||| CACAGCTTAC TGTAAG.... .......... .......... .......... .......... 16 CTAACTAGAA TATATTCTTC TTGAGATAGC AAGAAATCAG GAGCTGTTAA TATACTATAG 49495 .......... .......... .......... .......... .......... .......... 16 TGAGAATATT GAACTGAATC TCGGCCAAGG GGGTCGTATG GTCTTGGTTG ACTGTAGGTT 49555 .......... .......... .......... .......... .......... .......... 16 CATTGTATAC TTGCAAACAA CTGATGGGTT CTTTTAATTG GCAGTTGATT GATGACGACA 49615 |||||| |||||||||| .......... .......... .......... .......... ....TTGATT GATGACGACA 32 GATGGTATCA TTTTGATGAT TCCCATGTTT CACCTGTTGC TGAATCGGAT ATCAAAACAT 49675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTATCA TTTTGATGAT TCCCATGTTT CACCTGTTGC TGAATCGGAT ATCAAAACAT 92 CAGCTGCCTA CGTGTTGTTC TATCGAAGAG TTAAAGCTCA ACAAGATGGA GTTGTGGGAG 49735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGCCTA CGTGTTGTTC TATCGAAGAG TTAAAGCTCA ACAAGATGGA GTTGTGGGAG 152 GGTCCTATCA GTGCCATAGA AGCTCTTGAA AATGCTCGAC TGGTATCTCT TATCCCCACT 49795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCTATCA GTGCCATAGA AGCTCTTGAA AATGCTCGAC TGGTATCTCT TATCCCCACT 212 TGATAAGGTC TGAATTCTTG GCTGTCCGGC AGGGGGCTAA CGTGGTTGGG GCTCATCTTA 49855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAGGTC TGAATTCTTG GCTGTCCGGC AGGGGGCTAA CGTGGTTGGG GCTCATCTTA 272 TCCCTAGGTA AATTAGAAGT AGGTGCTCTA TCAGTAAGAG GCGCACCAAG AGGAAAACAG 49915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTAGGTA AATTAGAAGT AGGTGCTCTA TCAGTAAGAG GCGCACCAAG AGGAAAACAG 332 AAATTGGATG AGGCTCTAGT GTCTTTTTTT AAGAGAAATT TTGTAAGTCT TGGGTATCCG 49975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGGATG AGGCTCTAGT GTCTTTTTTT AAGAGAAATT TTGTAAGTCT TGGGTATCCG 392 TATTAGGCAT TATACTCTTG TAGAGTAGTA GTGTTCTTAT CATTTTTTAG TGAAGAAGTT 50035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGGCAT TATACTCTTG TAGAGTAGTA GTGTTCTTAT CATTTTTTAG TGAAGAAGTT 452 GTACTCAAGG ACCAGGCCTT CTTTTTTTAA ATCTAATTAC ATATAGCAGC ATGAGAGTTT 50095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTCAAGG ACCAGGCCTT CTTTTTTTAA ATCTAATTAC ATATAGCAGC ATGAGAGTTT 512 GATG 50099 |||| GATG 516 hqPGS_C08HBa0064M21.1+_SGN-E354502+ (49376 49391,49600 50099) ******************************************************************************** EST sequence 60 +strand 516 n (File: SGN-E355273+) 1 CACAGCTTAC TGTAAGTTGA TTGATGACGA CAGATGGTAT CATTTTGATG ATTCCCATGT 61 TTCACCTGTT GCTGAATCGG ATATCAAAAC ATCAGCTGCC TACGTGTTGT TCTATCGAAG 121 AGTTAAAGCT CAACAAGATG GAGTTGTGGG AGGGTCCTAT CAGTGCCATA GAAGCTCTTG 181 AAAATGCTCG ACTGGTATCT CTTATCCCCA CTTGATAAGG TCTGAATTCT TGGCTGTCCG 241 GCAGGGGGCT AACGTGGTTG GGGCTCATCT TATCCCTAGG TAAATTAGAA GTAGGTGCTC 301 TATCAGTAAG AGGCGCACCA AGAGGAAAAC AGAAATTGGA TGAGGCTCTA GTGTCTTTTT 361 TTAAGAGAAA TTTTGTAAGT CTTGGGTATC CGTATTAGGC ATTATACTCT TGTAGAGTAG 421 TAGTGTTCTT ATCATTTTTT AGTGAAGAAG TTGTACTCAA GGACCAGGCC TTCTTTTTTT 481 AAATCTAATT ACATATAGCA GCATGAGAGT TTGATG Predicted gene structure (within gDNA segment 48858 to 50709): Exon 1 49376 49391 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 49392 49599 ( 208 n); Pd: 0.997 (s: 0), Pa: 0.994 (s: 1.00) Exon 2 49600 50099 ( 500 n); cDNA 17 516 ( 500 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E355273+ 1.000 516 1.000 C PGS_C08HBa0064M21.1+_SGN-E355273+ (49376 49391,49600 50099) Alignment (genomic DNA sequence = upper lines): CACAGCTTAC TGTAAGGTAC TTTTTATTTT GTCTTGTTCT CTTGTTGAAT ATTGTAATTG 49435 |||||||||| |||||| CACAGCTTAC TGTAAG.... .......... .......... .......... .......... 16 CTAACTAGAA TATATTCTTC TTGAGATAGC AAGAAATCAG GAGCTGTTAA TATACTATAG 49495 .......... .......... .......... .......... .......... .......... 16 TGAGAATATT GAACTGAATC TCGGCCAAGG GGGTCGTATG GTCTTGGTTG ACTGTAGGTT 49555 .......... .......... .......... .......... .......... .......... 16 CATTGTATAC TTGCAAACAA CTGATGGGTT CTTTTAATTG GCAGTTGATT GATGACGACA 49615 |||||| |||||||||| .......... .......... .......... .......... ....TTGATT GATGACGACA 32 GATGGTATCA TTTTGATGAT TCCCATGTTT CACCTGTTGC TGAATCGGAT ATCAAAACAT 49675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTATCA TTTTGATGAT TCCCATGTTT CACCTGTTGC TGAATCGGAT ATCAAAACAT 92 CAGCTGCCTA CGTGTTGTTC TATCGAAGAG TTAAAGCTCA ACAAGATGGA GTTGTGGGAG 49735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGCCTA CGTGTTGTTC TATCGAAGAG TTAAAGCTCA ACAAGATGGA GTTGTGGGAG 152 GGTCCTATCA GTGCCATAGA AGCTCTTGAA AATGCTCGAC TGGTATCTCT TATCCCCACT 49795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCTATCA GTGCCATAGA AGCTCTTGAA AATGCTCGAC TGGTATCTCT TATCCCCACT 212 TGATAAGGTC TGAATTCTTG GCTGTCCGGC AGGGGGCTAA CGTGGTTGGG GCTCATCTTA 49855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAGGTC TGAATTCTTG GCTGTCCGGC AGGGGGCTAA CGTGGTTGGG GCTCATCTTA 272 TCCCTAGGTA AATTAGAAGT AGGTGCTCTA TCAGTAAGAG GCGCACCAAG AGGAAAACAG 49915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTAGGTA AATTAGAAGT AGGTGCTCTA TCAGTAAGAG GCGCACCAAG AGGAAAACAG 332 AAATTGGATG AGGCTCTAGT GTCTTTTTTT AAGAGAAATT TTGTAAGTCT TGGGTATCCG 49975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGGATG AGGCTCTAGT GTCTTTTTTT AAGAGAAATT TTGTAAGTCT TGGGTATCCG 392 TATTAGGCAT TATACTCTTG TAGAGTAGTA GTGTTCTTAT CATTTTTTAG TGAAGAAGTT 50035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGGCAT TATACTCTTG TAGAGTAGTA GTGTTCTTAT CATTTTTTAG TGAAGAAGTT 452 GTACTCAAGG ACCAGGCCTT CTTTTTTTAA ATCTAATTAC ATATAGCAGC ATGAGAGTTT 50095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTCAAGG ACCAGGCCTT CTTTTTTTAA ATCTAATTAC ATATAGCAGC ATGAGAGTTT 512 GATG 50099 |||| GATG 516 hqPGS_C08HBa0064M21.1+_SGN-E355273+ (49376 49391,49600 50099) ******************************************************************************** EST sequence 18 -strand 390 n (File: SGN-E217003-) 1 CCTAATGAGC TTTGGTCTTA TCCTTGTTTC AACAATAAGG TCATTAATTA TGTAGAACCC 61 TAATATGGGG TCTCAGTCAT CTATAAAATG AATGGTTTTT GCTGGGGAGC AGCAGGTTAA 121 TGTTTTTGTA GGGAAGGGTC AATAGAAAAT AGTTATTACT AATGTTTGCG ACTAAATGCT 181 TAGTAATGTT AGCATAAATA ATACTAGTAG CTAATATGCG TGAATTTGTT TTACTTTTTC 241 TTGCATAATT ATTTGCAGTA CATATATATA AATTACCCAA GGAATCAATG TTTGTGGCTC 301 CGTCCTTTGA TGAATACAGA GCTAGTGTGG CAAGTTATAA ATTTTGTTTA AAAGAAGCAA 361 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 53135 to 51248): Exon 1 52499 52135 ( 365 n); cDNA 1 364 ( 364 n); score: 0.992 Intron 1 52134 51716 ( 419 n); Pd: 0.000 (s: 0.96), Pa: 0.971 (s: 0) Exon 2 51715 51693 ( 23 n); cDNA 365 387 ( 23 n); score: 0.783 MATCH C08HBa0064M21.1- SGN-E217003- 0.992 388 0.995 C PGS_C08HBa0064M21.1-_SGN-E217003- (52499 52135,51715 51693) Alignment (genomic DNA sequence = upper lines): CCTAAATGAG CTTTGGTCTT ATCCTTGTTT CAACAATAAG GTCATTAATT ATGTAGAACC 52440 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAA-TGAG CTTTGGTCTT ATCCTTGTTT CAACAATAAG GTCATTAATT ATGTAGAACC 59 CTAATATGGG GTCTCAGTCA TCTATAAAAT GAATGGTTTT TGCTGGGGAG CAGCAGGTTA 52380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATGGG GTCTCAGTCA TCTATAAAAT GAATGGTTTT TGCTGGGGAG CAGCAGGTTA 119 ATGTTTTTGT AGGGAAGGGT CAATAGAAAA TAGTTATTAC TAATGTTTGC GACTAAATGC 52320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTTTGT AGGGAAGGGT CAATAGAAAA TAGTTATTAC TAATGTTTGC GACTAAATGC 179 TTAGTAATGT TAGCATAAAT AATACTAGTA GCTAATATGC GTGAATTTGT TTTACTTTTT 52260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTAATGT TAGCATAAAT AATACTAGTA GCTAATATGC GTGAATTTGT TTTACTTTTT 239 CTTGCATAAT TATTTGCAGT ACATATATAT AAATTACCCA AGGAATCAAT GTTTGTGGCT 52200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCATAAT TATTTGCAGT ACATATATAT AAATTACCCA AGGAATCAAT GTTTGTGGCT 299 CCGTCCTTTG ATGAATACAG AGCTAGTGTG GCAAGTTATA AATTTTGTTT AAAAGAAGCA 52140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTCCTTTG ATGAATACAG AGCTAGTGTG GCAAGTTATA AATTTTGTTT AAAAGAAGCA 359 AACTAGTTGG TTGGTCATAT GAAAGAAAGA AGCTGGCTAA CTTTGAGGAG ATGGCTGTTG 52080 || | AAAAA..... .......... .......... .......... .......... .......... 364 AATTTCAAAG TGAAAACAAT GCAACATCGA AACCAAGTAT GTCAATGAAC ACTTTTAAAT 52020 .......... .......... .......... .......... .......... .......... 364 TAGAAAAGAG AGATATTTTT GAGCCCATGA CACATTATTA ATTCATAAAG TAAGGTAGCA 51960 .......... .......... .......... .......... .......... .......... 364 TGATTGAATG GACTACAGCT CAATCAAAGC AAAGCATCTC CTTTACATAA CGGCACCTGT 51900 .......... .......... .......... .......... .......... .......... 364 CTCTTTGTCT ACTACTCTAT TGCTAGTACA ACTAGTAGTA GTAATGAATG CTACAATCCA 51840 .......... .......... .......... .......... .......... .......... 364 AATTGAATAG TAGTAAAAAG ATGCTCTCTA TTTACTAAAG TAAGTATTAT TCTTTCGTCA 51780 .......... .......... .......... .......... .......... .......... 364 CTCTAAAGCA ATTAAACTTA AAATGCTACT TTTAGCACTA AGATTGTTGA TGGTATTTTT 51720 .......... .......... .......... .......... .......... .......... 364 ATAGTAAAGA GAAGATAAAA AAAAAAA 51693 ||| | || | |||| ||||||| ....AAAAAA AAAAAAAAAA AAAAAAA 387 hqPGS_C08HBa0064M21.1-_SGN-E217003- (52499 52135,51715 51693) ******************************************************************************** EST sequence 106 +strand 416 n (File: SGN-E271757+) 1 TCTAGGTATC AACTACGGGC AAATTGCCAA CAATCTGCCC TTACCGGAAA ACGTGGTACC 61 ATTAGTCAAA TCCATCGGAG CTACCAGAAT CAAGCTCTAT GATGCTGACC CACATGTCCT 121 CAAAGCCTTT GCTAACACCG GCGTTGAGTT CATCGTCAGT CTTGGCAATG AGTACCTTGC 181 CAAGATGAAA GATCCTTCTA AAGCTCAATC ATGGGTTAAA AATAATGTCC AACCTTACTT 241 ACCTGCTACT AAAATCACCT GCATCGCTGC CGGTAATGAA GTTCTCACCT TTAACGATAC 301 CATCCTCACC GACAACCTCC TCCCTGCAAT GCAAAGTGTC CACACTGCTC TTGTTAATCT 361 CAAATTGGAC AAGCAAGTCA CTGTCACCAC CGCACATTCT CTTGCTATTC TACAAA Predicted gene structure (within gDNA segment 52108 to 50483): Exon 1 51508 51093 ( 416 n); cDNA 1 416 ( 416 n); score: 0.998 MATCH C08HBa0064M21.1- SGN-E271757+ 0.998 416 1.000 C PGS_C08HBa0064M21.1-_SGN-E271757+ (51508 51093) Alignment (genomic DNA sequence = upper lines): TCTAGGTATC AACTACGGGC AAATTGCCAA CAATCTGCCC TTACCGGAAA ACGTGGTACC 51449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGGTATC AACTACGGGC AAATTGCCAA CAATCTGCCC TTACCGGAAA ACGTGGTACC 60 ATTAGTCAAA TCCATCGGAG CTACCAGAAT CAAGCTCTAT GATGCTGACC CACATGTCCT 51389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTCAAA TCCATCGGAG CTACCAGAAT CAAGCTCTAT GATGCTGACC CACATGTCCT 120 CAAAGCCTTT GCTAACACCG GCGTTGAGTT CATCGTCAGT CTTGGCAATG AGTACCTTGC 51329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCCTTT GCTAACACCG GCGTTGAGTT CATCGTCAGT CTTGGCAATG AGTACCTTGC 180 CAAGATGAAA GATCCTTCTA AAGCTCAATC ATGGGTTAAA AATAATGTCC AACCTTACTT 51269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATGAAA GATCCTTCTA AAGCTCAATC ATGGGTTAAA AATAATGTCC AACCTTACTT 240 ACCTGCTACT AAAATCACCT GCATCGCTGT CGGTAATGAA GTTCTCACCT TTAACGATAC 51209 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACCTGCTACT AAAATCACCT GCATCGCTGC CGGTAATGAA GTTCTCACCT TTAACGATAC 300 CATCCTCACC GACAACCTCC TCCCTGCAAT GCAAAGTGTC CACACTGCTC TTGTTAATCT 51149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCTCACC GACAACCTCC TCCCTGCAAT GCAAAGTGTC CACACTGCTC TTGTTAATCT 360 CAAATTGGAC AAGCAAGTCA CTGTCACCAC CGCACATTCT CTTGCTATTC TACAAA 51093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CAAATTGGAC AAGCAAGTCA CTGTCACCAC CGCACATTCT CTTGCTATTC TACAAA 416 hqPGS_C08HBa0064M21.1-_SGN-E271757+ (51508 51093) ******************************************************************************** EST sequence 128 +strand 547 n (File: SGN-E298282+) 1 TACTTTTAGC ACTAAGATTG TTGATGGGAT TTTTATAGTA GAGAGAAGAT AAAAAAAAAA 61 AGCAGGCAGG CGCTACGTTA CTTATAACCA CCACCACTCG GCGGCACTTT AGTTGCTTTT 121 ACTCTGTTCT TTCTCCTTTA GCTCCTTCCT TCCTTGAGTC ATTTGATGAT GGAATCCAAT 181 CCCAATCCCA TCTCCTCTTC TCTTCTCCTT TTTCTGCTGT TTTTTACTCC AACTATGGTG 241 GCTCCTCTAG GTATCAACTA CGGGCAAATT GCCAACAATC TGCCCTTACC GGAAAACGTG 301 GTACCATTAG TCAAATCCAT CGGAGCTACC AGAATCAAGC TCTATGATGC TGACCCACAT 361 GTCCTCAAAG CCTTTGCTAA CACCGGCGTT GAGTTCATCG TCAGTCTTGG CAATGAGTAC 421 CTTGCCAAGA TGAAAGATCC TTCTAAAGCT CAATCATGGG TTAAAAATAA TGTCCAACCT 481 TACTTACCTG CTACTAAAAT CACCTGCATC GCTGTCGGTA ATGAAGTTCT CACCTTTAAC 541 GATACCA Predicted gene structure (within gDNA segment 52353 to 50597): Exon 1 51753 51207 ( 547 n); cDNA 1 547 ( 547 n); score: 0.996 MATCH C08HBa0064M21.1- SGN-E298282+ 0.996 547 1.000 C PGS_C08HBa0064M21.1-_SGN-E298282+ (51753 51207) Alignment (genomic DNA sequence = upper lines): TACTTTTAGC ACTAAGATTG TTGATGGTAT TTTTATAGTA AAGAGAAGAT AAAAAAAAAA 51694 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| TACTTTTAGC ACTAAGATTG TTGATGGGAT TTTTATAGTA GAGAGAAGAT AAAAAAAAAA 60 AGCAGGCAGG CGCTACGTTA CTTATAACCA CCACCACTCG GCGGCACTTT AGTTGCTTTT 51634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGGCAGG CGCTACGTTA CTTATAACCA CCACCACTCG GCGGCACTTT AGTTGCTTTT 120 ACTCTGTTCT TTCTCCTTTA GCTCCTTCCT TCCTTGAGTC ATTTGATGAT GGAATCCAAT 51574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTGTTCT TTCTCCTTTA GCTCCTTCCT TCCTTGAGTC ATTTGATGAT GGAATCCAAT 180 CCCAATCCCA TCTCCTCTTC TCTTCTCCTT TTTCTGCTGT TTTTTACTCC AACTATGGTG 51514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAATCCCA TCTCCTCTTC TCTTCTCCTT TTTCTGCTGT TTTTTACTCC AACTATGGTG 240 GCTCCTCTAG GTATCAACTA CGGGCAAATT GCCAACAATC TGCCCTTACC GGAAAACGTG 51454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCTCTAG GTATCAACTA CGGGCAAATT GCCAACAATC TGCCCTTACC GGAAAACGTG 300 GTACCATTAG TCAAATCCAT CGGAGCTACC AGAATCAAGC TCTATGATGC TGACCCACAT 51394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCATTAG TCAAATCCAT CGGAGCTACC AGAATCAAGC TCTATGATGC TGACCCACAT 360 GTCCTCAAAG CCTTTGCTAA CACCGGCGTT GAGTTCATCG TCAGTCTTGG CAATGAGTAC 51334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTCAAAG CCTTTGCTAA CACCGGCGTT GAGTTCATCG TCAGTCTTGG CAATGAGTAC 420 CTTGCCAAGA TGAAAGATCC TTCTAAAGCT CAATCATGGG TTAAAAATAA TGTCCAACCT 51274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCCAAGA TGAAAGATCC TTCTAAAGCT CAATCATGGG TTAAAAATAA TGTCCAACCT 480 TACTTACCTG CTACTAAAAT CACCTGCATC GCTGTCGGTA ATGAAGTTCT CACCTTTAAC 51214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTACCTG CTACTAAAAT CACCTGCATC GCTGTCGGTA ATGAAGTTCT CACCTTTAAC 540 GATACCA 51207 ||||||| GATACCA 547 hqPGS_C08HBa0064M21.1-_SGN-E298282+ (51753 51207) ******************************************************************************** EST sequence 95 +strand 576 n (File: SGN-E539599+) 1 CTGGATTCCA TATGGGAGCC TTCAATGTTG AATGCGATGT TGTTGACCCA GATGATGTGC 61 TTAAGATAGT AACAACAGTG TCAAGAGCTC TTGCAGTCTA TGGCACCCTT GCGTTTGCTG 121 AGATGATAAA AAATTGCATG TCAGAGGAGC TCTCTTGGAA GGAACCTGCC AAGAAATGGG 181 AGACGTTGCT ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA 241 TCGCTCCACT TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG 301 TTTCAACAAT AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA 361 AATGAATGGT TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA 421 AAATAGTTAT TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA 481 GTAGCTAATA TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA 541 TATAAATTAC CCAAGGAATC AATGTTAAAA AAAAAA Predicted gene structure (within gDNA segment 53542 to 51497): Exon 1 52942 52911 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 52910 52827 ( 84 n); Pd: 0.980 (s: 0), Pa: 0.975 (s: 1.00) Exon 2 52826 52698 ( 129 n); cDNA 33 161 ( 129 n); score: 1.000 Intron 2 52697 52612 ( 86 n); Pd: 0.982 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 3 52611 52206 ( 406 n); cDNA 162 567 ( 406 n); score: 0.998 Intron 3 52205 51716 ( 490 n); Pd: 0.000 (s: 0.98), Pa: 0.971 (s: 0) Exon 4 51715 51707 ( 9 n); cDNA 568 576 ( 9 n); score: 0.667 MATCH C08HBa0064M21.1- SGN-E539599+ 0.998 576 1.000 C PGS_C08HBa0064M21.1-_SGN-E539599+ (52942 52911,52826 52698,52611 52206,51715 51707) Alignment (genomic DNA sequence = upper lines): CTGGATTCCA TATGGGAGCC TTCAATGTTG AAGTATGTGA TTTTACATCA ATTGTGTACT 52883 |||||||||| |||||||||| |||||||||| || CTGGATTCCA TATGGGAGCC TTCAATGTTG AA........ .......... .......... 32 TGTACATGGT TCATTCTCGT CTTGACATTA ACTAATTGCT TCTTGAATAT GGTTAGTGCG 52823 |||| .......... .......... .......... .......... .......... ......TGCG 36 ATGTTGTTGA CCCAGATGAT GTGCTTAAGA TAGTAACAAC AGTGTCAAGA GCTCTTGCAG 52763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGTTGA CCCAGATGAT GTGCTTAAGA TAGTAACAAC AGTGTCAAGA GCTCTTGCAG 96 TCTATGGCAC CCTTGCGTTT GCTGAGATGA TAAAAAATTG CATGTCAGAG GAGCTCTCTT 52703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATGGCAC CCTTGCGTTT GCTGAGATGA TAAAAAATTG CATGTCAGAG GAGCTCTCTT 156 GGAAGGTAGG TGTCAAATTG ATAATTTGTA TAGGCACTTC AGTTTTGTTG TTCTCGTCAG 52643 ||||| GGAAG..... .......... .......... .......... .......... .......... 161 CACTGATGGA TGCCAACTGG TGTTCATGCA GGAACCTGCC AAGAAATGGG AGACGTTGCT 52583 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAACCTGCC AAGAAATGGG AGACGTTGCT 190 ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA TCGCTCCACT 52523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA TCGCTCCACT 250 TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG TTTCAACAAT 52463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG TTTCAACAAT 310 AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA AATGAATGGT 52403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA AATGAATGGT 370 TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA AAATAGTTAT 52343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA AAATAGTTAT 430 TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA GTAGCTAATA 52283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA GTAGCTAATA 490 TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA TATAAATTAC 52223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA TATAAATTAC 550 CCAAGGAATC AATGTTTGTG GCTCCGTCCT TTGATGAATA CAGAGCTAGT GTGGCAAGTT 52163 |||||||||| |||||| CCAAGGAATC AATGTTA... .......... .......... .......... .......... 567 ATAAATTTTG TTTAAAAGAA GCAAACTAGT TGGTTGGTCA TATGAAAGAA AGAAGCTGGC 52103 .......... .......... .......... .......... .......... .......... 567 TAACTTTGAG GAGATGGCTG TTGAATTTCA AAGTGAAAAC AATGCAACAT CGAAACCAAG 52043 .......... .......... .......... .......... .......... .......... 567 TATGTCAATG AACACTTTTA AATTAGAAAA GAGAGATATT TTTGAGCCCA TGACACATTA 51983 .......... .......... .......... .......... .......... .......... 567 TTAATTCATA AAGTAAGGTA GCATGATTGA ATGGACTACA GCTCAATCAA AGCAAAGCAT 51923 .......... .......... .......... .......... .......... .......... 567 CTCCTTTACA TAACGGCACC TGTCTCTTTG TCTACTACTC TATTGCTAGT ACAACTAGTA 51863 .......... .......... .......... .......... .......... .......... 567 GTAGTAATGA ATGCTACAAT CCAAATTGAA TAGTAGTAAA AAGATGCTCT CTATTTACTA 51803 .......... .......... .......... .......... .......... .......... 567 AAGTAAGTAT TATTCTTTCG TCACTCTAAA GCAATTAAAC TTAAAATGCT ACTTTTAGCA 51743 .......... .......... .......... .......... .......... .......... 567 CTAAGATTGT TGATGGTATT TTTATAGTAA AGAGAA 51707 || | | || .......... .......... .......AAA AAAAAA 576 hqPGS_C08HBa0064M21.1-_SGN-E539599+ (52942 52911,52826 52698,52611 52206) ******************************************************************************** EST sequence 26 -strand 577 n (File: SGN-E539597-) 1 CTGGATTCCA TATGGGAGCC TTCAATGTTG AATGCGATGT TGTTGACCCA GATGATGTGC 61 TTAAGATAGT AACAACAGTG TCAAGAGCTC TTGCAGTCTA TGGCACCCTT GCGTTTGCTG 121 AGATGATAAA AAATTGCATG TCAGAGGAGC TCTCTTGGAA GGAACCTGCC AAGAAATGGG 181 AGACGTTGCT ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA 241 TCGCTCCACT TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG 301 TTTCAACAAT AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA 361 AATGAATGGT TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA 421 AAATAGTTAT TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA 481 GTAGCTAATA TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA 541 TATAAATTAC CCANAGGAAT CAATGTTAAA AGAAAAA Predicted gene structure (within gDNA segment 53552 to 51380): Exon 1 52942 52911 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 52910 52827 ( 84 n); Pd: 0.980 (s: 0), Pa: 0.975 (s: 1.00) Exon 2 52826 52698 ( 129 n); cDNA 33 161 ( 129 n); score: 1.000 Intron 2 52697 52612 ( 86 n); Pd: 0.982 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 3 52611 52206 ( 406 n); cDNA 162 568 ( 407 n); score: 0.991 Intron 3 52205 52115 ( 91 n); Pd: 0.000 (s: 0.93), Pa: 0.473 (s: 0) Exon 4 52114 52109 ( 6 n); cDNA 569 574 ( 6 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E539597- 0.993 573 0.993 C PGS_C08HBa0064M21.1-_SGN-E539597- (52942 52911,52826 52698,52611 52206,52114 52109) Alignment (genomic DNA sequence = upper lines): CTGGATTCCA TATGGGAGCC TTCAATGTTG AAGTATGTGA TTTTACATCA ATTGTGTACT 52883 |||||||||| |||||||||| |||||||||| || CTGGATTCCA TATGGGAGCC TTCAATGTTG AA........ .......... .......... 32 TGTACATGGT TCATTCTCGT CTTGACATTA ACTAATTGCT TCTTGAATAT GGTTAGTGCG 52823 |||| .......... .......... .......... .......... .......... ......TGCG 36 ATGTTGTTGA CCCAGATGAT GTGCTTAAGA TAGTAACAAC AGTGTCAAGA GCTCTTGCAG 52763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGTTGA CCCAGATGAT GTGCTTAAGA TAGTAACAAC AGTGTCAAGA GCTCTTGCAG 96 TCTATGGCAC CCTTGCGTTT GCTGAGATGA TAAAAAATTG CATGTCAGAG GAGCTCTCTT 52703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATGGCAC CCTTGCGTTT GCTGAGATGA TAAAAAATTG CATGTCAGAG GAGCTCTCTT 156 GGAAGGTAGG TGTCAAATTG ATAATTTGTA TAGGCACTTC AGTTTTGTTG TTCTCGTCAG 52643 ||||| GGAAG..... .......... .......... .......... .......... .......... 161 CACTGATGGA TGCCAACTGG TGTTCATGCA GGAACCTGCC AAGAAATGGG AGACGTTGCT 52583 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAACCTGCC AAGAAATGGG AGACGTTGCT 190 ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA TCGCTCCACT 52523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGCTTA GGAGCTTCTG GCAGTGAACC CGGTGTCGAA GGGGAAGAAA TCGCTCCACT 250 TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG TTTCAACAAT 52463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAGGAA AATGTAGCCA CTCCCTAAAT GAGCTTTGGT CTTATCCTTG TTTCAACAAT 310 AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA AATGAATGGT 52403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTCATTA ATTATGTAGA ACCCTAATAT GGGGTCTCAG TCATCTATAA AATGAATGGT 370 TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA AAATAGTTAT 52343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTGGG GAGCAGCAGG TTAATGTTTT TGTAGGGAAG GGTCAATAGA AAATAGTTAT 430 TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA GTAGCTAATA 52283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAATGTT TGCGACTAAA TGCTTAGTAA TGTTAGCATA AATAATACTA GTAGCTAATA 490 TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA TATAAATTAC 52223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTGAATT TGTTTTACTT TTTCTTGCAT AATTATTTGC AGTACATATA TATAAATTAC 550 CCA-AGGAAT CAATGTTTGT GGCTCCGTCC TTTGATGAAT ACAGAGCTAG TGTGGCAAGT 52164 ||| |||||| ||||||| CCANAGGAAT CAATGTTA.. .......... .......... .......... .......... 568 TATAAATTTT GTTTAAAAGA AGCAAACTAG TTGGTTGGTC ATATGAAAGA AAGAA 52109 | ||||| .......... .......... .......... .......... .........A AAGAA 574 hqPGS_C08HBa0064M21.1-_SGN-E539597- (52942 52911,52826 52698,52611 52206) ******************************************************************************** EST sequence 85 +strand 550 n (File: SGN-E285142+) 1 TGGATTCCAT ATGGGAGCCT TCAATGTTGA ATGCGATGTT GTTGACCCAG ATGATGTGCT 61 TAAGATAGTA ACAACAGTGT CAAGAGCTCT TGCAGTCTAT GGCACCCTTG CGTTTGCTGA 121 GATGATAAAA AATTGCATGT CAGAGGAGCT CTCTTGGAAG GAACCTGCCA AGAAATGGGA 181 GACGTTGCTA TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG GGGAAGAAAT 241 CGCTCCACTT GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC TTATCCTTGT 301 TTCAACAATA AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT CATCTATAAA 361 ATGAATGGTT TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG GTCAATAGAA 421 AATAGTTATT ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA ATAATACTAG 481 TAGCTAATAT GCGTGAATTT GTTTTACTTT TTCTTGCATA ATTATTTGCA GTACATATAT 541 ATAAATTACC Predicted gene structure (within gDNA segment 53541 to 51612): Exon 1 52941 52911 ( 31 n); cDNA 1 31 ( 31 n); score: 1.000 Intron 1 52910 52827 ( 84 n); Pd: 0.980 (s: 0), Pa: 0.975 (s: 1.00) Exon 2 52826 52698 ( 129 n); cDNA 32 160 ( 129 n); score: 1.000 Intron 2 52697 52612 ( 86 n); Pd: 0.982 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 3 52611 52222 ( 390 n); cDNA 161 550 ( 390 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E285142+ 1.000 550 1.000 C PGS_C08HBa0064M21.1-_SGN-E285142+ (52941 52911,52826 52698,52611 52222) Alignment (genomic DNA sequence = upper lines): TGGATTCCAT ATGGGAGCCT TCAATGTTGA AGTATGTGAT TTTACATCAA TTGTGTACTT 52882 |||||||||| |||||||||| |||||||||| | TGGATTCCAT ATGGGAGCCT TCAATGTTGA A......... .......... .......... 31 GTACATGGTT CATTCTCGTC TTGACATTAA CTAATTGCTT CTTGAATATG GTTAGTGCGA 52822 ||||| .......... .......... .......... .......... .......... .....TGCGA 36 TGTTGTTGAC CCAGATGATG TGCTTAAGAT AGTAACAACA GTGTCAAGAG CTCTTGCAGT 52762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTTGAC CCAGATGATG TGCTTAAGAT AGTAACAACA GTGTCAAGAG CTCTTGCAGT 96 CTATGGCACC CTTGCGTTTG CTGAGATGAT AAAAAATTGC ATGTCAGAGG AGCTCTCTTG 52702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGGCACC CTTGCGTTTG CTGAGATGAT AAAAAATTGC ATGTCAGAGG AGCTCTCTTG 156 GAAGGTAGGT GTCAAATTGA TAATTTGTAT AGGCACTTCA GTTTTGTTGT TCTCGTCAGC 52642 |||| GAAG...... .......... .......... .......... .......... .......... 160 ACTGATGGAT GCCAACTGGT GTTCATGCAG GAACCTGCCA AGAAATGGGA GACGTTGCTA 52582 |||||||||| |||||||||| |||||||||| .......... .......... .......... GAACCTGCCA AGAAATGGGA GACGTTGCTA 190 TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG GGGAAGAAAT CGCTCCACTT 52522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG GGGAAGAAAT CGCTCCACTT 250 GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC TTATCCTTGT TTCAACAATA 52462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC TTATCCTTGT TTCAACAATA 310 AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT CATCTATAAA ATGAATGGTT 52402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT CATCTATAAA ATGAATGGTT 370 TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG GTCAATAGAA AATAGTTATT 52342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG GTCAATAGAA AATAGTTATT 430 ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA ATAATACTAG TAGCTAATAT 52282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA ATAATACTAG TAGCTAATAT 490 GCGTGAATTT GTTTTACTTT TTCTTGCATA ATTATTTGCA GTACATATAT ATAAATTACC 52222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGAATTT GTTTTACTTT TTCTTGCATA ATTATTTGCA GTACATATAT ATAAATTACC 550 hqPGS_C08HBa0064M21.1-_SGN-E285142+ (52941 52911,52826 52698,52611 52222) ******************************************************************************** EST sequence 101 +strand 790 n (File: SGN-E553650+) 1 CAATTCACAA GTTTATCGAA TTGGATGTTC AAATTGTAGT CCTTGGAACT GGCAAAAAGG 61 AGTTTGAGCA GGAGATTGAA CAGCTCGAAG TGTTGTACCC TAATAAAGCT AAAGGAGTGG 121 CAAAATTCAA TGTCCCTTTG GCTCACATGA TCACTGCTGG TGCTGATTTT ATGTTGGTCC 181 CAAGCAGATT TGAACCTTGT GGTCTCATTC AGTTACATGC TATGCGATAT GGAACAGTGC 241 CAATCTGTGC CTCAACTGGT GGACTTGTTG ACACTGTGAA AGAAGGCTAT ACTGGATTCC 301 ATATGGGAGC CTTCAATGTT GAATGCGATG TTGTTGACCC AGATGATGTG CTTAAGATAG 361 TAACAACAGT GTCAAGAGCT CTTGCAGTCT ATGGCACCCT TGCGTTTGCT GAGATGATAA 421 AAAATTGCAT GTCAGAGGAG CTCTCTTGGA AGGAACCTGC CAAGAAATGG GAGACGTTGC 481 TATTGGGCTT AGGAGCTTCT GGCAGTGAAC CCGGTGTCGA AGGGGAAGAA ATCGCTCCAC 541 TTGCCAAGGA AAATGTAGCC ACTCCCTAAA TGAGCTTTGG TCTTATCCTT GTTTCAACAA 601 TAAGGTCATT AATTATGTAG AACCCTAATA TGGGGTCTCA GTCATCTATA AAATGAATGG 661 TTTTTGCTGG GGAGCAGCAG GTTAATGTTT TTGTAGGGAA GGGTCAATAG AAAATAGTTA 721 TTACTAATGT TTGCGACTAA ATGCTTAGTA ATGTTAGCAT AAATAATACT AGTAGCTAAA 781 AAAAAAAAAA Predicted gene structure (within gDNA segment 54093 to 51565): Exon 1 53493 53450 ( 44 n); cDNA 1 44 ( 44 n); score: 1.000 Intron 1 53449 53361 ( 89 n); Pd: 0.972 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 2 53360 53169 ( 192 n); cDNA 45 236 ( 192 n); score: 1.000 Intron 2 53168 52998 ( 171 n); Pd: 0.941 (s: 1.00), Pa: 0.683 (s: 1.00) Exon 3 52997 52911 ( 87 n); cDNA 237 323 ( 87 n); score: 1.000 Intron 3 52910 52827 ( 84 n); Pd: 0.980 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 52826 52698 ( 129 n); cDNA 324 452 ( 129 n); score: 1.000 Intron 4 52697 52612 ( 86 n); Pd: 0.982 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 5 52611 52275 ( 337 n); cDNA 453 789 ( 337 n); score: 0.979 MATCH C08HBa0064M21.1- SGN-E553650+ 0.991 789 0.999 C PGS_C08HBa0064M21.1-_SGN-E553650+ (53493 53450,53360 53169,52997 52911,52826 52698,52611 52275) Alignment (genomic DNA sequence = upper lines): CAATTCACAA GTTTATCGAA TTGGATGTTC AAATTGTAGT CCTTGTAAGT ACCAAATGGA 53434 |||||||||| |||||||||| |||||||||| |||||||||| |||| CAATTCACAA GTTTATCGAA TTGGATGTTC AAATTGTAGT CCTT...... .......... 44 ATCATTCTAT CTTTCTTGTT GAGTTTACTT GTGCTGAAAC TGAAATTGAC CTGCTGCTCA 53374 .......... .......... .......... .......... .......... .......... 44 TCCTATGCAT CAGGGAACTG GCAAAAAGGA GTTTGAGCAG GAGATTGAAC AGCTCGAAGT 53314 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGAACTG GCAAAAAGGA GTTTGAGCAG GAGATTGAAC AGCTCGAAGT 91 GTTGTACCCT AATAAAGCTA AAGGAGTGGC AAAATTCAAT GTCCCTTTGG CTCACATGAT 53254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTACCCT AATAAAGCTA AAGGAGTGGC AAAATTCAAT GTCCCTTTGG CTCACATGAT 151 CACTGCTGGT GCTGATTTTA TGTTGGTCCC AAGCAGATTT GAACCTTGTG GTCTCATTCA 53194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGCTGGT GCTGATTTTA TGTTGGTCCC AAGCAGATTT GAACCTTGTG GTCTCATTCA 211 GTTACATGCT ATGCGATATG GAACAGTAAG AACCATAAGA GCTTGTACCC TTTTACTGAG 53134 |||||||||| |||||||||| ||||| GTTACATGCT ATGCGATATG GAACA..... .......... .......... .......... 236 TTTTAAAAAA AAGAATCACA AGACCTTGTT TTTCGTCTAA ATTATAAATG CCAACTAAAT 53074 .......... .......... .......... .......... .......... .......... 236 GTTACTGCAG CAAGCTTTTC ATTTCTGAAA ACTAGTTATA TCTTATTTTA ACATAATCAC 53014 .......... .......... .......... .......... .......... .......... 236 ACGTGACGTG AGTCAGGTGC CAATCTGTGC CTCAACTGGT GGACTTGTTG ACACTGTGAA 52954 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTGC CAATCTGTGC CTCAACTGGT GGACTTGTTG ACACTGTGAA 280 AGAAGGCTAT ACTGGATTCC ATATGGGAGC CTTCAATGTT GAAGTATGTG ATTTTACATC 52894 |||||||||| |||||||||| |||||||||| |||||||||| ||| AGAAGGCTAT ACTGGATTCC ATATGGGAGC CTTCAATGTT GAA....... .......... 323 AATTGTGTAC TTGTACATGG TTCATTCTCG TCTTGACATT AACTAATTGC TTCTTGAATA 52834 .......... .......... .......... .......... .......... .......... 323 TGGTTAGTGC GATGTTGTTG ACCCAGATGA TGTGCTTAAG ATAGTAACAA CAGTGTCAAG 52774 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TGC GATGTTGTTG ACCCAGATGA TGTGCTTAAG ATAGTAACAA CAGTGTCAAG 376 AGCTCTTGCA GTCTATGGCA CCCTTGCGTT TGCTGAGATG ATAAAAAATT GCATGTCAGA 52714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCTTGCA GTCTATGGCA CCCTTGCGTT TGCTGAGATG ATAAAAAATT GCATGTCAGA 436 GGAGCTCTCT TGGAAGGTAG GTGTCAAATT GATAATTTGT ATAGGCACTT CAGTTTTGTT 52654 |||||||||| |||||| GGAGCTCTCT TGGAAG.... .......... .......... .......... .......... 452 GTTCTCGTCA GCACTGATGG ATGCCAACTG GTGTTCATGC AGGAACCTGC CAAGAAATGG 52594 |||||||| |||||||||| .......... .......... .......... .......... ..GAACCTGC CAAGAAATGG 470 GAGACGTTGC TATTGGGCTT AGGAGCTTCT GGCAGTGAAC CCGGTGTCGA AGGGGAAGAA 52534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACGTTGC TATTGGGCTT AGGAGCTTCT GGCAGTGAAC CCGGTGTCGA AGGGGAAGAA 530 ATCGCTCCAC TTGCCAAGGA AAATGTAGCC ACTCCCTAAA TGAGCTTTGG TCTTATCCTT 52474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCTCCAC TTGCCAAGGA AAATGTAGCC ACTCCCTAAA TGAGCTTTGG TCTTATCCTT 590 GTTTCAACAA TAAGGTCATT AATTATGTAG AACCCTAATA TGGGGTCTCA GTCATCTATA 52414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAACAA TAAGGTCATT AATTATGTAG AACCCTAATA TGGGGTCTCA GTCATCTATA 650 AAATGAATGG TTTTTGCTGG GGAGCAGCAG GTTAATGTTT TTGTAGGGAA GGGTCAATAG 52354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAATGG TTTTTGCTGG GGAGCAGCAG GTTAATGTTT TTGTAGGGAA GGGTCAATAG 710 AAAATAGTTA TTACTAATGT TTGCGACTAA ATGCTTAGTA ATGTTAGCAT AAATAATACT 52294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAGTTA TTACTAATGT TTGCGACTAA ATGCTTAGTA ATGTTAGCAT AAATAATACT 770 AGTAGCTAAT ATGCGTGAA 52275 ||||||||| | || AGTAGCTAAA AAAAAAAAA 789 hqPGS_C08HBa0064M21.1-_SGN-E553650+ (53493 53450,53360 53169,52997 52911,52826 52698,52611 52275) ******************************************************************************** EST sequence 31 -strand 908 n (File: SGN-E553441-) 1 GACAAATACA CAGATGTCAA ATACGATATA ACCACTGTCA TGGACGCAAA ACCTTTACTA 61 AAGGAGGCTC TTCAAGCAGC AGTTGGCTTG CCTGTTGACA AGAAGATCGC CCCGATTGGC 121 TTCATCGGCA GACTTGAGGA GCAGAAAGGT TCAGATATTC TTGTTGCTGC AATTCACAAG 181 TTTATAGAAT TGGATGTTCA ACTTGTAGTC CTTGGAACTG GCAAAAAGGA GTTTGAGCAG 241 GAGATTGAAC AGCTCGAAGT GTTGTACTCT AATTAAGCTA AAGGAGTGGC AAAATTCAAT 301 GTCCCTTTGG CTCACATGAT CACTGATGGT GCTGATTTTA TGTTGGTCCC AAGCAGATTT 361 GAACCTGGTG GTCTCATTCA GTTACTTGAT ATGCGATATG GAACAGTGCC AATTTGTGCC 421 TCAACTGGTG GACTTGTTGA CACTGTGAAA GAAGGTTATA CTTGATTCCA TATGGGAGCC 481 TTCAATGTTG AATGCGATGT TGTTGATCCT GATGATGTGC TTAAGATAGT AACAACAGTG 541 TCAAGAGCTC TTGCAGTATA TGGCACCCTT GCGTTTGCTG AGATGATACA AAATTGCATG 601 TCAGAGGAGC TGTCTTGGAA GGAACGTGCC AAGAAATGGG AGACGTTGCT ATTGGGCTTA 661 GGAGCTTCTG GCAGTGAACC CGGTGTCGCA AGGGGAAGAA ATTGCTCCAC TTGCCAAGGA 721 AAATGTAGCC ACTCCCTAAA TGAGTTTGGG TGTTATCCTT GTTTCAACAA TAAGTTCATT 781 AATTATGTAG AACCCTAATA TGGGGTCTCA GTCATCTATA TAATGAATGG TTTTTGTTGG 841 GGAGCAGCAG GTTAATGTTT TTGTAGGGAA GGGTCAATAG AAAATAGTTA TTAGCTAATG 901 TATGCGAC Predicted gene structure (within gDNA segment 54367 to 51591): Exon 1 53757 53722 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 53721 53627 ( 95 n); Pd: 1.000 (s: 0), Pa: 0.993 (s: 1.00) Exon 2 53626 53450 ( 177 n); cDNA 37 213 ( 177 n); score: 0.972 Intron 2 53449 53361 ( 89 n); Pd: 0.972 (s: 0.96), Pa: 0.976 (s: 1.00) Exon 3 53360 53169 ( 192 n); cDNA 214 405 ( 192 n); score: 0.969 Intron 3 53168 52998 ( 171 n); Pd: 0.941 (s: 0.94), Pa: 0.683 (s: 0.98) Exon 4 52997 52911 ( 87 n); cDNA 406 492 ( 87 n); score: 0.966 Intron 4 52910 52827 ( 84 n); Pd: 0.980 (s: 0.96), Pa: 0.975 (s: 0.96) Exon 5 52826 52698 ( 129 n); cDNA 493 621 ( 129 n); score: 0.961 Intron 5 52697 52612 ( 86 n); Pd: 0.982 (s: 0.96), Pa: 0.943 (s: 0.98) Exon 6 52611 52327 ( 285 n); cDNA 622 908 ( 287 n); score: 0.951 MATCH C08HBa0064M21.1- SGN-E553441- 0.962 906 0.998 C PGS_C08HBa0064M21.1-_SGN-E553441- (53757 53722,53626 53450,53360 53169,52997 52911,52826 52698,52611 52327) Alignment (genomic DNA sequence = upper lines): GACAAATACA CAGATGTCAA ATACGATATA ACCACTGTAA GATAAGATTT TTCCCCACTC 53698 |||||||||| |||||||||| |||||||||| |||||| GACAAATACA CAGATGTCAA ATACGATATA ACCACT.... .......... .......... 36 CAGTATATAC TAAATTATTT TGTATGTTTA TGAAATTAAA GAGTTTCTTG CTGATCAAAA 53638 .......... .......... .......... .......... .......... .......... 36 TCTCCATACA GGTCATGGAC GCAAAACCTT TACTAAAGGA GGCTCTTCAA GCAGCAGTTG 53578 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTCATGGAC GCAAAACCTT TACTAAAGGA GGCTCTTCAA GCAGCAGTTG 85 GCTTGCCTGT TGACAAGAAG ATCCCCTTGA TTGGCTTCAT CGGCAGACTT GAGGAGCAGA 53518 |||||||||| |||||||||| ||| || || |||||||||| |||||||||| |||||||||| GCTTGCCTGT TGACAAGAAG ATCGCCCCGA TTGGCTTCAT CGGCAGACTT GAGGAGCAGA 145 AAGGTTCAGA TATTCTTGTT GCTGCAATTC ACAAGTTTAT CGAATTGGAT GTTCAAATTG 53458 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| AAGGTTCAGA TATTCTTGTT GCTGCAATTC ACAAGTTTAT AGAATTGGAT GTTCAACTTG 205 TAGTCCTTGT AAGTACCAAA TGGAATCATT CTATCTTTCT TGTTGAGTTT ACTTGTGCTG 53398 |||||||| TAGTCCTT.. .......... .......... .......... .......... .......... 213 AAACTGAAAT TGACCTGCTG CTCATCCTAT GCATCAGGGA ACTGGCAAAA AGGAGTTTGA 53338 ||| |||||||||| |||||||||| .......... .......... .......... .......GGA ACTGGCAAAA AGGAGTTTGA 236 GCAGGAGATT GAACAGCTCG AAGTGTTGTA CCCTAATAAA GCTAAAGGAG TGGCAAAATT 53278 |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| GCAGGAGATT GAACAGCTCG AAGTGTTGTA CTCTAATTAA GCTAAAGGAG TGGCAAAATT 296 CAATGTCCCT TTGGCTCACA TGATCACTGC TGGTGCTGAT TTTATGTTGG TCCCAAGCAG 53218 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAATGTCCCT TTGGCTCACA TGATCACTGA TGGTGCTGAT TTTATGTTGG TCCCAAGCAG 356 ATTTGAACCT TGTGGTCTCA TTCAGTTACA TGCTATGCGA TATGGAACAG TAAGAACCAT 53158 |||||||||| ||||||||| ||||||||| || ||||||| ||||||||| ATTTGAACCT GGTGGTCTCA TTCAGTTACT TGATATGCGA TATGGAACA. .......... 405 AAGAGCTTGT ACCCTTTTAC TGAGTTTTAA AAAAAAGAAT CACAAGACCT TGTTTTTCGT 53098 .......... .......... .......... .......... .......... .......... 405 CTAAATTATA AATGCCAACT AAATGTTACT GCAGCAAGCT TTTCATTTCT GAAAACTAGT 53038 .......... .......... .......... .......... .......... .......... 405 TATATCTTAT TTTAACATAA TCACACGTGA CGTGAGTCAG GTGCCAATCT GTGCCTCAAC 52978 |||||||| | |||||||||| .......... .......... .......... .......... GTGCCAATTT GTGCCTCAAC 425 TGGTGGACTT GTTGACACTG TGAAAGAAGG CTATACTGGA TTCCATATGG GAGCCTTCAA 52918 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| TGGTGGACTT GTTGACACTG TGAAAGAAGG TTATACTTGA TTCCATATGG GAGCCTTCAA 485 TGTTGAAGTA TGTGATTTTA CATCAATTGT GTACTTGTAC ATGGTTCATT CTCGTCTTGA 52858 ||||||| TGTTGAA... .......... .......... .......... .......... .......... 492 CATTAACTAA TTGCTTCTTG AATATGGTTA GTGCGATGTT GTTGACCCAG ATGATGTGCT 52798 ||||||||| ||||| || | |||||||||| .......... .......... .......... .TGCGATGTT GTTGATCCTG ATGATGTGCT 521 TAAGATAGTA ACAACAGTGT CAAGAGCTCT TGCAGTCTAT GGCACCCTTG CGTTTGCTGA 52738 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TAAGATAGTA ACAACAGTGT CAAGAGCTCT TGCAGTATAT GGCACCCTTG CGTTTGCTGA 581 GATGATAAAA AATTGCATGT CAGAGGAGCT CTCTTGGAAG GTAGGTGTCA AATTGATAAT 52678 ||||||| || |||||||||| |||||||||| ||||||||| GATGATACAA AATTGCATGT CAGAGGAGCT GTCTTGGAAG .......... .......... 621 TTGTATAGGC ACTTCAGTTT TGTTGTTCTC GTCAGCACTG ATGGATGCCA ACTGGTGTTC 52618 .......... .......... .......... .......... .......... .......... 621 ATGCAGGAAC CTGCCAAGAA ATGGGAGACG TTGCTATTGG GCTTAGGAGC TTCTGGCAGT 52558 |||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAC GTGCCAAGAA ATGGGAGACG TTGCTATTGG GCTTAGGAGC TTCTGGCAGT 675 GAACCCGGTG TCG-AAGGGG AAGAAATCGC TCCACTTGCC AAGGAAAATG TAGCCACTCC 52499 |||||||||| ||| |||||| ||||||| || |||||||||| |||||||||| |||||||||| GAACCCGGTG TCGCAAGGGG AAGAAATTGC TCCACTTGCC AAGGAAAATG TAGCCACTCC 735 CTAAATGAGC TTTGGTCTTA TCCTTGTTTC AACAATAAGG TCATTAATTA TGTAGAACCC 52439 ||||||||| || ||| ||| |||||||||| ||||||||| |||||||||| |||||||||| CTAAATGAGT TTGGGTGTTA TCCTTGTTTC AACAATAAGT TCATTAATTA TGTAGAACCC 795 TAATATGGGG TCTCAGTCAT CTATAAAATG AATGGTTTTT GCTGGGGAGC AGCAGGTTAA 52379 |||||||||| |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| TAATATGGGG TCTCAGTCAT CTATATAATG AATGGTTTTT GTTGGGGAGC AGCAGGTTAA 855 TGTTTTTGTA GGGAAGGGTC AATAGAAAAT AGTTATTA-C TAATGTTTGC GAC 52327 |||||||||| |||||||||| |||||||||| |||||||| | |||||| ||| ||| TGTTTTTGTA GGGAAGGGTC AATAGAAAAT AGTTATTAGC TAATGTATGC GAC 908 hqPGS_C08HBa0064M21.1-_SGN-E553441- (53757 53722,53626 53450,53360 53169,52997 52911,52826 52698,52611 52327) ******************************************************************************** EST sequence 96 +strand 505 n (File: SGN-E253363+) 1 TCAAATTGTA GTCCTTGGAA CTGGCTAAAA GGAGTTTGAG CAGGAGATTG AACAGGTCGA 61 AGTGTTGTAC CCTAATAAAG CTAAAGGAGT GGCAAAATTC AATGTCCCTT TGGCTCACAT 121 GATCACTGCT GGTGCTGATT TTATGTTGGT CCCAAGCAGA TTTGAACCTT GTGGTCTCAT 181 TCAGTTACAT GCTATGCGAT ATGGAACAGT GCCAATCTGT GCCTCAACTG GTGGACTTGG 241 ATACACTGTT AAAGAAGGCT CTACTGGATT CCATATGGGA GCCTTCAATG TTGAATGCGA 301 TGTTGTTGAC CCAGATGATG TGCTTAAGAT AGTAACAACA GTGTCAAGAG CTCTTGCAGT 361 CTATGGCACC CTTGCGTTTG CTGAGATGAT AAAAAATTGC ATGTCAGAGG AGCTCTCTTG 421 GAAGGAACCT GCCAAGAAAT GGGAGACGTT GCTATTGGGC TTATGAGCTT CTGGCAGTGA 481 ACCCGGTGTC GAATGGGAAG AAATT Predicted gene structure (within gDNA segment 54210 to 51813): Exon 1 53465 53450 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 53449 53361 ( 89 n); Pd: 0.972 (s: 0), Pa: 0.976 (s: 0.96) Exon 2 53360 53169 ( 192 n); cDNA 17 208 ( 192 n); score: 0.990 Intron 2 53168 52998 ( 171 n); Pd: 0.941 (s: 1.00), Pa: 0.683 (s: 0.92) Exon 3 52997 52911 ( 87 n); cDNA 209 295 ( 87 n); score: 0.943 Intron 3 52910 52827 ( 84 n); Pd: 0.980 (s: 0.96), Pa: 0.975 (s: 1.00) Exon 4 52826 52698 ( 129 n); cDNA 296 424 ( 129 n); score: 1.000 Intron 4 52697 52612 ( 86 n); Pd: 0.982 (s: 1.00), Pa: 0.943 (s: 0.98) Exon 5 52611 52532 ( 80 n); cDNA 425 504 ( 80 n); score: 0.975 MATCH C08HBa0064M21.1- SGN-E253363+ 0.982 504 0.998 C PGS_C08HBa0064M21.1-_SGN-E253363+ (53465 53450,53360 53169,52997 52911,52826 52698,52611 52532) Alignment (genomic DNA sequence = upper lines): TCAAATTGTA GTCCTTGTAA GTACCAAATG GAATCATTCT ATCTTTCTTG TTGAGTTTAC 53406 |||||||||| |||||| TCAAATTGTA GTCCTT.... .......... .......... .......... .......... 16 TTGTGCTGAA ACTGAAATTG ACCTGCTGCT CATCCTATGC ATCAGGGAAC TGGCAAAAAG 53346 ||||| |||| ||||| .......... .......... .......... .......... .....GGAAC TGGCTAAAAG 31 GAGTTTGAGC AGGAGATTGA ACAGCTCGAA GTGTTGTACC CTAATAAAGC TAAAGGAGTG 53286 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GAGTTTGAGC AGGAGATTGA ACAGGTCGAA GTGTTGTACC CTAATAAAGC TAAAGGAGTG 91 GCAAAATTCA ATGTCCCTTT GGCTCACATG ATCACTGCTG GTGCTGATTT TATGTTGGTC 53226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAATTCA ATGTCCCTTT GGCTCACATG ATCACTGCTG GTGCTGATTT TATGTTGGTC 151 CCAAGCAGAT TTGAACCTTG TGGTCTCATT CAGTTACATG CTATGCGATA TGGAACAGTA 53166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CCAAGCAGAT TTGAACCTTG TGGTCTCATT CAGTTACATG CTATGCGATA TGGAACA... 208 AGAACCATAA GAGCTTGTAC CCTTTTACTG AGTTTTAAAA AAAAGAATCA CAAGACCTTG 53106 .......... .......... .......... .......... .......... .......... 208 TTTTTCGTCT AAATTATAAA TGCCAACTAA ATGTTACTGC AGCAAGCTTT TCATTTCTGA 53046 .......... .......... .......... .......... .......... .......... 208 AAACTAGTTA TATCTTATTT TAACATAATC ACACGTGACG TGAGTCAGGT GCCAATCTGT 52986 || |||||||||| .......... .......... .......... .......... ........GT GCCAATCTGT 220 GCCTCAACTG GTGGACTTGT TGACACTGTG AAAGAAGGCT ATACTGGATT CCATATGGGA 52926 |||||||||| ||||||||| ||||||| |||||||||| ||||||||| |||||||||| GCCTCAACTG GTGGACTTGG ATACACTGTT AAAGAAGGCT CTACTGGATT CCATATGGGA 280 GCCTTCAATG TTGAAGTATG TGATTTTACA TCAATTGTGT ACTTGTACAT GGTTCATTCT 52866 |||||||||| ||||| GCCTTCAATG TTGAA..... .......... .......... .......... .......... 295 CGTCTTGACA TTAACTAATT GCTTCTTGAA TATGGTTAGT GCGATGTTGT TGACCCAGAT 52806 | |||||||||| |||||||||| .......... .......... .......... .........T GCGATGTTGT TGACCCAGAT 316 GATGTGCTTA AGATAGTAAC AACAGTGTCA AGAGCTCTTG CAGTCTATGG CACCCTTGCG 52746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTGCTTA AGATAGTAAC AACAGTGTCA AGAGCTCTTG CAGTCTATGG CACCCTTGCG 376 TTTGCTGAGA TGATAAAAAA TTGCATGTCA GAGGAGCTCT CTTGGAAGGT AGGTGTCAAA 52686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGCTGAGA TGATAAAAAA TTGCATGTCA GAGGAGCTCT CTTGGAAG.. .......... 424 TTGATAATTT GTATAGGCAC TTCAGTTTTG TTGTTCTCGT CAGCACTGAT GGATGCCAAC 52626 .......... .......... .......... .......... .......... .......... 424 TGGTGTTCAT GCAGGAACCT GCCAAGAAAT GGGAGACGTT GCTATTGGGC TTAGGAGCTT 52566 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| .......... ....GAACCT GCCAAGAAAT GGGAGACGTT GCTATTGGGC TTATGAGCTT 470 CTGGCAGTGA ACCCGGTGTC GAAGGGGAAG AAAT 52532 |||||||||| |||||||||| ||| |||||| |||| CTGGCAGTGA ACCCGGTGTC GAATGGGAAG AAAT 504 hqPGS_C08HBa0064M21.1-_SGN-E253363+ (53465 53450,53360 53169,52997 52911,52826 52698,52611 52532) ******************************************************************************** EST sequence 66 -strand 339 n (File: SGN-E229472-) 1 AACCTGCCAA GAAATGGGAG ACGTTGCTAT TGGGCTTAGG AGCTTCTGGC AGTGAACCCG 61 GTGTCGAAGG GGAAGAAATC GCTCCACTTG CCAAGGAAAA TGTAGCCACT CCCTAAATGA 121 GCTTTGGTCT TATCCTTGTT TCAACAATAA GGTCATTAAT TATGTAGAAC CCTAATATGG 181 GGTCTCAGTC ATCTATAAAA TGAATGGTTT TTGCTGGGGA GCAGCAGGTT AATGTTTTTG 241 TAGGGAAGGG TCAATAGAAA ATAGTTATTA CTAATGTTTG CGACTAAATG CTTAGTAATG 301 TTAGCATAAA TAATACTAGT AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 53220 to 51510): Exon 1 52610 52290 ( 321 n); cDNA 1 321 ( 321 n); score: 1.000 Intron 1 52289 51711 ( 579 n); Pd: 0.000 (s: 1.00), Pa: 0.331 (s: 0) Exon 2 51710 51693 ( 18 n); cDNA 322 339 ( 18 n); score: 0.833 MATCH C08HBa0064M21.1- SGN-E229472- 1.000 339 1.000 C PGS_C08HBa0064M21.1-_SGN-E229472- (52610 52290,51710 51693) Alignment (genomic DNA sequence = upper lines): AACCTGCCAA GAAATGGGAG ACGTTGCTAT TGGGCTTAGG AGCTTCTGGC AGTGAACCCG 52551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGCCAA GAAATGGGAG ACGTTGCTAT TGGGCTTAGG AGCTTCTGGC AGTGAACCCG 60 GTGTCGAAGG GGAAGAAATC GCTCCACTTG CCAAGGAAAA TGTAGCCACT CCCTAAATGA 52491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCGAAGG GGAAGAAATC GCTCCACTTG CCAAGGAAAA TGTAGCCACT CCCTAAATGA 120 GCTTTGGTCT TATCCTTGTT TCAACAATAA GGTCATTAAT TATGTAGAAC CCTAATATGG 52431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGGTCT TATCCTTGTT TCAACAATAA GGTCATTAAT TATGTAGAAC CCTAATATGG 180 GGTCTCAGTC ATCTATAAAA TGAATGGTTT TTGCTGGGGA GCAGCAGGTT AATGTTTTTG 52371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTCAGTC ATCTATAAAA TGAATGGTTT TTGCTGGGGA GCAGCAGGTT AATGTTTTTG 240 TAGGGAAGGG TCAATAGAAA ATAGTTATTA CTAATGTTTG CGACTAAATG CTTAGTAATG 52311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGAAGGG TCAATAGAAA ATAGTTATTA CTAATGTTTG CGACTAAATG CTTAGTAATG 300 TTAGCATAAA TAATACTAGT AGCTAATATG CGTGAATTTG TTTTACTTTT TCTTGCATAA 52251 |||||||||| |||||||||| | TTAGCATAAA TAATACTAGT A......... .......... .......... .......... 321 TTATTTGCAG TACATATATA TAAATTACCC AAGGAATCAA TGTTTGTGGC TCCGTCCTTT 52191 .......... .......... .......... .......... .......... .......... 321 GATGAATACA GAGCTAGTGT GGCAAGTTAT AAATTTTGTT TAAAAGAAGC AAACTAGTTG 52131 .......... .......... .......... .......... .......... .......... 321 GTTGGTCATA TGAAAGAAAG AAGCTGGCTA ACTTTGAGGA GATGGCTGTT GAATTTCAAA 52071 .......... .......... .......... .......... .......... .......... 321 GTGAAAACAA TGCAACATCG AAACCAAGTA TGTCAATGAA CACTTTTAAA TTAGAAAAGA 52011 .......... .......... .......... .......... .......... .......... 321 GAGATATTTT TGAGCCCATG ACACATTATT AATTCATAAA GTAAGGTAGC ATGATTGAAT 51951 .......... .......... .......... .......... .......... .......... 321 GGACTACAGC TCAATCAAAG CAAAGCATCT CCTTTACATA ACGGCACCTG TCTCTTTGTC 51891 .......... .......... .......... .......... .......... .......... 321 TACTACTCTA TTGCTAGTAC AACTAGTAGT AGTAATGAAT GCTACAATCC AAATTGAATA 51831 .......... .......... .......... .......... .......... .......... 321 GTAGTAAAAA GATGCTCTCT ATTTACTAAA GTAAGTATTA TTCTTTCGTC ACTCTAAAGC 51771 .......... .......... .......... .......... .......... .......... 321 AATTAAACTT AAAATGCTAC TTTTAGCACT AAGATTGTTG ATGGTATTTT TATAGTAAAG 51711 .......... .......... .......... .......... .......... .......... 321 AGAAGATAAA AAAAAAAA 51693 | || | ||| |||||||| AAAAAAAAAA AAAAAAAA 339 hqPGS_C08HBa0064M21.1-_SGN-E229472- (52610 52290) ******************************************************************************** EST sequence 67 -strand 330 n (File: SGN-E229589-) 1 AGAAATGGGA GACGTTGCTA TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG 61 GGGAAGAAAT CGCTCCACTT GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC 121 TTATCCTTGT TTCAACAATA AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT 181 CATCTATAAA ATGAATGGTT TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG 241 GTCAATAGAA AATAGTTATT ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA 301 ATAATACTAG TAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 53211 to 51510): Exon 1 52601 52290 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 52289 51711 ( 579 n); Pd: 0.000 (s: 1.00), Pa: 0.331 (s: 0) Exon 2 51710 51693 ( 18 n); cDNA 313 330 ( 18 n); score: 0.833 MATCH C08HBa0064M21.1- SGN-E229589- 1.000 330 1.000 C PGS_C08HBa0064M21.1-_SGN-E229589- (52601 52290,51710 51693) Alignment (genomic DNA sequence = upper lines): AGAAATGGGA GACGTTGCTA TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG 52542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGGGA GACGTTGCTA TTGGGCTTAG GAGCTTCTGG CAGTGAACCC GGTGTCGAAG 60 GGGAAGAAAT CGCTCCACTT GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC 52482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGAAAT CGCTCCACTT GCCAAGGAAA ATGTAGCCAC TCCCTAAATG AGCTTTGGTC 120 TTATCCTTGT TTCAACAATA AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT 52422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCCTTGT TTCAACAATA AGGTCATTAA TTATGTAGAA CCCTAATATG GGGTCTCAGT 180 CATCTATAAA ATGAATGGTT TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG 52362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTATAAA ATGAATGGTT TTTGCTGGGG AGCAGCAGGT TAATGTTTTT GTAGGGAAGG 240 GTCAATAGAA AATAGTTATT ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA 52302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATAGAA AATAGTTATT ACTAATGTTT GCGACTAAAT GCTTAGTAAT GTTAGCATAA 300 ATAATACTAG TAGCTAATAT GCGTGAATTT GTTTTACTTT TTCTTGCATA ATTATTTGCA 52242 |||||||||| || ATAATACTAG TA........ .......... .......... .......... .......... 312 GTACATATAT ATAAATTACC CAAGGAATCA ATGTTTGTGG CTCCGTCCTT TGATGAATAC 52182 .......... .......... .......... .......... .......... .......... 312 AGAGCTAGTG TGGCAAGTTA TAAATTTTGT TTAAAAGAAG CAAACTAGTT GGTTGGTCAT 52122 .......... .......... .......... .......... .......... .......... 312 ATGAAAGAAA GAAGCTGGCT AACTTTGAGG AGATGGCTGT TGAATTTCAA AGTGAAAACA 52062 .......... .......... .......... .......... .......... .......... 312 ATGCAACATC GAAACCAAGT ATGTCAATGA ACACTTTTAA ATTAGAAAAG AGAGATATTT 52002 .......... .......... .......... .......... .......... .......... 312 TTGAGCCCAT GACACATTAT TAATTCATAA AGTAAGGTAG CATGATTGAA TGGACTACAG 51942 .......... .......... .......... .......... .......... .......... 312 CTCAATCAAA GCAAAGCATC TCCTTTACAT AACGGCACCT GTCTCTTTGT CTACTACTCT 51882 .......... .......... .......... .......... .......... .......... 312 ATTGCTAGTA CAACTAGTAG TAGTAATGAA TGCTACAATC CAAATTGAAT AGTAGTAAAA 51822 .......... .......... .......... .......... .......... .......... 312 AGATGCTCTC TATTTACTAA AGTAAGTATT ATTCTTTCGT CACTCTAAAG CAATTAAACT 51762 .......... .......... .......... .......... .......... .......... 312 TAAAATGCTA CTTTTAGCAC TAAGATTGTT GATGGTATTT TTATAGTAAA GAGAAGATAA 51702 | || | || .......... .......... .......... .......... .......... .AAAAAAAAA 321 AAAAAAAAA 51693 ||||||||| AAAAAAAAA 330 hqPGS_C08HBa0064M21.1-_SGN-E229589- (52601 52290) ******************************************************************************** EST sequence 87 +strand 491 n (File: SGN-E216528+) 1 TACAGTAAGC CCATACTATG CCCAAGAACT TGTCTCTGCT GTTGACAAGG GTGTTGAATT 61 GGACAGTGTC CTTCGTAAGA CTTGCATAAC TGGGATTGTG AATGGCATGG ATACACAAGA 121 GTGGAACCCA GCGACTGACA AATACACAGA TGTCAAATAC GATATAACCA CTGTCATGGA 181 CGCAAAACCT TTACTAAAGG AGGCTCTTCA AGCAGCAGTT GGCTTGCCTG TTGACAAGAA 241 GATCCCCTTG ATTGGCTTCA TCGGCAGACT TGAGGAGCAG AAAGGTTCAG ATATTCTTGT 301 TGCTGCAATT CACAAGTTTA TCGAATTGGA TGTTCAAATT GTAGTCCTTG GAACTGGCAA 361 AAAGGAGTTT GAGCAGGAGA TTGAACAGCT CGAAGTGTTG TACCCTAATA AAGCTAAAGG 421 AGTGGCAAAA TTTAATGTCC CTATGGCTCA CATGATCACT GCTGGTGCTG ATTTTATGTT 481 GGTCCCAAGC A Predicted gene structure (within gDNA segment 54493 to 52609): Exon 1 53893 53722 ( 172 n); cDNA 1 172 ( 172 n); score: 1.000 Intron 1 53721 53627 ( 95 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 53626 53450 ( 177 n); cDNA 173 349 ( 177 n); score: 1.000 Intron 2 53449 53361 ( 89 n); Pd: 0.972 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 53360 53219 ( 142 n); cDNA 350 491 ( 142 n); score: 0.986 MATCH C08HBa0064M21.1- SGN-E216528+ 0.996 491 1.000 C PGS_C08HBa0064M21.1-_SGN-E216528+ (53893 53722,53626 53450,53360 53219) Alignment (genomic DNA sequence = upper lines): TACAGTAAGC CCATACTATG CCCAAGAACT TGTCTCTGCT GTTGACAAGG GTGTTGAATT 53834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGTAAGC CCATACTATG CCCAAGAACT TGTCTCTGCT GTTGACAAGG GTGTTGAATT 60 GGACAGTGTC CTTCGTAAGA CTTGCATAAC TGGGATTGTG AATGGCATGG ATACACAAGA 53774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAGTGTC CTTCGTAAGA CTTGCATAAC TGGGATTGTG AATGGCATGG ATACACAAGA 120 GTGGAACCCA GCGACTGACA AATACACAGA TGTCAAATAC GATATAACCA CTGTAAGATA 53714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTGGAACCCA GCGACTGACA AATACACAGA TGTCAAATAC GATATAACCA CT........ 172 AGATTTTTCC CCACTCCAGT ATATACTAAA TTATTTTGTA TGTTTATGAA ATTAAAGAGT 53654 .......... .......... .......... .......... .......... .......... 172 TTCTTGCTGA TCAAAATCTC CATACAGGTC ATGGACGCAA AACCTTTACT AAAGGAGGCT 53594 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTC ATGGACGCAA AACCTTTACT AAAGGAGGCT 205 CTTCAAGCAG CAGTTGGCTT GCCTGTTGAC AAGAAGATCC CCTTGATTGG CTTCATCGGC 53534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAGCAG CAGTTGGCTT GCCTGTTGAC AAGAAGATCC CCTTGATTGG CTTCATCGGC 265 AGACTTGAGG AGCAGAAAGG TTCAGATATT CTTGTTGCTG CAATTCACAA GTTTATCGAA 53474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTGAGG AGCAGAAAGG TTCAGATATT CTTGTTGCTG CAATTCACAA GTTTATCGAA 325 TTGGATGTTC AAATTGTAGT CCTTGTAAGT ACCAAATGGA ATCATTCTAT CTTTCTTGTT 53414 |||||||||| |||||||||| |||| TTGGATGTTC AAATTGTAGT CCTT...... .......... .......... .......... 349 GAGTTTACTT GTGCTGAAAC TGAAATTGAC CTGCTGCTCA TCCTATGCAT CAGGGAACTG 53354 ||||||| .......... .......... .......... .......... .......... ...GGAACTG 356 GCAAAAAGGA GTTTGAGCAG GAGATTGAAC AGCTCGAAGT GTTGTACCCT AATAAAGCTA 53294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAAGGA GTTTGAGCAG GAGATTGAAC AGCTCGAAGT GTTGTACCCT AATAAAGCTA 416 AAGGAGTGGC AAAATTCAAT GTCCCTTTGG CTCACATGAT CACTGCTGGT GCTGATTTTA 53234 |||||||||| |||||| ||| |||||| ||| |||||||||| |||||||||| |||||||||| AAGGAGTGGC AAAATTTAAT GTCCCTATGG CTCACATGAT CACTGCTGGT GCTGATTTTA 476 TGTTGGTCCC AAGCA 53219 |||||||||| ||||| TGTTGGTCCC AAGCA 491 hqPGS_C08HBa0064M21.1-_SGN-E216528+ (53893 53722,53626 53450,53360 53219) ******************************************************************************** EST sequence 103 +strand 432 n (File: SGN-E271435+) 1 GAAGGCTGGG ATATTACAAT CACATAGGGT GGTTACAGTA AGCCCATACT ATGCCCAAGA 61 ACTTGTCTCT GCTGTTGACA AGGGTGTTGA ATTGGACAGT GTCCTTCGTA AGACTTGCAT 121 AACTGGGATT GTGAATGGCA TGGATACACA AGAGTGGAAC CCAGCGACTG ACAAATACAC 181 AGATGTCAAA TACGATATAA CCACTGTCAT GGACGCAAAA CCTTTACTAA AGGAGGCTCT 241 TCAAGCAGCA GTTGGCTTGC CTGTTGACAA GAAGATCCCC TTGATTGGCT TCATCGGCAG 301 ACTTGAGGAG CAGAAAGGTT CAGATATTCT TGTTGCTGCA ATTCACAAGT TTATCGAATT 361 GGATGTTCAA ATTGTAGTCC TTGGAACTGG CAAAAAGGAG TTTGAGCAGG AGATTGAACA 421 GCTCGAAGTG TT Predicted gene structure (within gDNA segment 54526 to 52701): Exon 1 53926 53722 ( 205 n); cDNA 1 205 ( 205 n); score: 0.995 Intron 1 53721 53627 ( 95 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 53626 53450 ( 177 n); cDNA 206 382 ( 177 n); score: 1.000 Intron 2 53449 53361 ( 89 n); Pd: 0.972 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 53360 53311 ( 50 n); cDNA 383 432 ( 50 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E271435+ 0.998 432 1.000 C PGS_C08HBa0064M21.1-_SGN-E271435+ (53926 53722,53626 53450,53360 53311) Alignment (genomic DNA sequence = upper lines): GAAGGCTGGG ATATTAGAAT CACATAGGGT GGTTACAGTA AGCCCATACT ATGCCCAAGA 53867 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTGGG ATATTACAAT CACATAGGGT GGTTACAGTA AGCCCATACT ATGCCCAAGA 60 ACTTGTCTCT GCTGTTGACA AGGGTGTTGA ATTGGACAGT GTCCTTCGTA AGACTTGCAT 53807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGTCTCT GCTGTTGACA AGGGTGTTGA ATTGGACAGT GTCCTTCGTA AGACTTGCAT 120 AACTGGGATT GTGAATGGCA TGGATACACA AGAGTGGAAC CCAGCGACTG ACAAATACAC 53747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGGGATT GTGAATGGCA TGGATACACA AGAGTGGAAC CCAGCGACTG ACAAATACAC 180 AGATGTCAAA TACGATATAA CCACTGTAAG ATAAGATTTT TCCCCACTCC AGTATATACT 53687 |||||||||| |||||||||| ||||| AGATGTCAAA TACGATATAA CCACT..... .......... .......... .......... 205 AAATTATTTT GTATGTTTAT GAAATTAAAG AGTTTCTTGC TGATCAAAAT CTCCATACAG 53627 .......... .......... .......... .......... .......... .......... 205 GTCATGGACG CAAAACCTTT ACTAAAGGAG GCTCTTCAAG CAGCAGTTGG CTTGCCTGTT 53567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGGACG CAAAACCTTT ACTAAAGGAG GCTCTTCAAG CAGCAGTTGG CTTGCCTGTT 265 GACAAGAAGA TCCCCTTGAT TGGCTTCATC GGCAGACTTG AGGAGCAGAA AGGTTCAGAT 53507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGAAGA TCCCCTTGAT TGGCTTCATC GGCAGACTTG AGGAGCAGAA AGGTTCAGAT 325 ATTCTTGTTG CTGCAATTCA CAAGTTTATC GAATTGGATG TTCAAATTGT AGTCCTTGTA 53447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTCTTGTTG CTGCAATTCA CAAGTTTATC GAATTGGATG TTCAAATTGT AGTCCTT... 382 AGTACCAAAT GGAATCATTC TATCTTTCTT GTTGAGTTTA CTTGTGCTGA AACTGAAATT 53387 .......... .......... .......... .......... .......... .......... 382 GACCTGCTGC TCATCCTATG CATCAGGGAA CTGGCAAAAA GGAGTTTGAG CAGGAGATTG 53327 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGAA CTGGCAAAAA GGAGTTTGAG CAGGAGATTG 416 AACAGCTCGA AGTGTT 53311 |||||||||| |||||| AACAGCTCGA AGTGTT 432 hqPGS_C08HBa0064M21.1-_SGN-E271435+ (53926 53722,53626 53450,53360 53311) ******************************************************************************** EST sequence 131 +strand 724 n (File: SGN-E344703+) 1 ATAGATTTCG ACCACACATG GCAAGCATCA CAGCTTCACA CTTTGTGTCA AGAAGCTCAA 61 ATGTCCAAAC TTCACTAGAC ACCAAATCAA CCTTGTCACA GATAGGACTC AGGAACCATA 121 CTCTGACACA CAATGGGTTA AGGGCTGTTA ACAAGCTTGA TGGGCTCCAA TCAAGAACTA 181 ATACTAAGGT AACACCCAAG ATGAGATCCA CCAAGTCAGC TACCATTGTT TGTGGAAAGG 241 GAATGAACTT GATCTTTGTG GGTACTGAGG TTGGTCCTTG GAGCAAAACT GGTGGACTAG 301 GTGATGTTCT TGGTGGACTA CCACCAGCCC TTGCAGCCCG CGGACATCGG GTAATGACAA 361 TATCCCCCCG TTATGACCAA TACAAAGATG CTTGGGATAC TAGCGTTGCC CTTGAGGTCA 421 AAGTTGGAGA CAGCATTGAA ATTGTTCGCT TCTTTCACTG CTATAAACGT GGGGTTGATC 481 GTGTTTTTGT TGACCACCCA ATGTTCTTGG AGAAAGTTTG GGGCAAAACT GGTTCAAAAA 541 TCTACGGCCC CAAAGCTGGA CTGGATTATC TGGACAATGA ACTTAGGTTC AGCTTGGTTG 601 TGTCAAGCAG CCCTAGAGGC ACCTAGAGTT TTGAATTTGA ACAGTAGCAA CTACTTCTCA 661 GGACCATATG GAGAAGGATG TTCTCTTCAT TGCCAATGAT TGGCACACAG CTCTAATTCC 721 CTGC Predicted gene structure (within gDNA segment 55965 to 53676): Exon 1 55365 55031 ( 335 n); cDNA 1 335 ( 335 n); score: 1.000 Intron 1 55030 54960 ( 71 n); Pd: 1.000 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 54959 54879 ( 81 n); cDNA 336 416 ( 81 n); score: 1.000 Intron 2 54878 54814 ( 65 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 54813 54715 ( 99 n); cDNA 417 515 ( 99 n); score: 1.000 Intron 3 54714 54649 ( 66 n); Pd: 0.985 (s: 1.00), Pa: 0.973 (s: 1.00) Exon 4 54648 54559 ( 90 n); cDNA 516 606 ( 91 n); score: 0.972 Intron 4 54558 54471 ( 88 n); Pd: 0.915 (s: 0.95), Pa: 0.989 (s: 1.00) Exon 5 54470 54407 ( 64 n); cDNA 607 670 ( 64 n); score: 1.000 Intron 5 54406 54339 ( 68 n); Pd: 0.824 (s: 1.00), Pa: 0.531 (s: 0.95) Exon 6 54338 54286 ( 53 n); cDNA 671 724 ( 54 n); score: 0.953 MATCH C08HBa0064M21.1- SGN-E344703+ 0.993 722 0.997 C PGS_C08HBa0064M21.1-_SGN-E344703+ (55365 55031,54959 54879,54813 54715,54648 54559,54470 54407,54338 54286) Alignment (genomic DNA sequence = upper lines): ATAGATTTCG ACCACACATG GCAAGCATCA CAGCTTCACA CTTTGTGTCA AGAAGCTCAA 55306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATTTCG ACCACACATG GCAAGCATCA CAGCTTCACA CTTTGTGTCA AGAAGCTCAA 60 ATGTCCAAAC TTCACTAGAC ACCAAATCAA CCTTGTCACA GATAGGACTC AGGAACCATA 55246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCCAAAC TTCACTAGAC ACCAAATCAA CCTTGTCACA GATAGGACTC AGGAACCATA 120 CTCTGACACA CAATGGGTTA AGGGCTGTTA ACAAGCTTGA TGGGCTCCAA TCAAGAACTA 55186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGACACA CAATGGGTTA AGGGCTGTTA ACAAGCTTGA TGGGCTCCAA TCAAGAACTA 180 ATACTAAGGT AACACCCAAG ATGAGATCCA CCAAGTCAGC TACCATTGTT TGTGGAAAGG 55126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTAAGGT AACACCCAAG ATGAGATCCA CCAAGTCAGC TACCATTGTT TGTGGAAAGG 240 GAATGAACTT GATCTTTGTG GGTACTGAGG TTGGTCCTTG GAGCAAAACT GGTGGACTAG 55066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGAACTT GATCTTTGTG GGTACTGAGG TTGGTCCTTG GAGCAAAACT GGTGGACTAG 300 GTGATGTTCT TGGTGGACTA CCACCAGCCC TTGCAGTAAG TCTTACCTAC TCATGATTCA 55006 |||||||||| |||||||||| |||||||||| ||||| GTGATGTTCT TGGTGGACTA CCACCAGCCC TTGCA..... .......... .......... 335 TTCTTTTGTT TCTAATGCAC CAATTACAGC TTCATTATCA TTTTAGGCCC GCGGACATCG 54946 |||| |||||||||| .......... .......... .......... .......... ......GCCC GCGGACATCG 349 GGTAATGACA ATATCCCCCC GTTATGACCA ATACAAAGAT GCTTGGGATA CTAGCGTTGC 54886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATGACA ATATCCCCCC GTTATGACCA ATACAAAGAT GCTTGGGATA CTAGCGTTGC 409 CCTTGAGGTA CTCCTTCCTA TATATACTTT TCATACATAC AACAATATAT ATTCAACAAT 54826 ||||||| CCTTGAG... .......... .......... .......... .......... .......... 416 GTTTATCTGC AGGTCAAAGT TGGAGACAGC ATTGAAATTG TTCGCTTCTT TCACTGCTAT 54766 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTCAAAGT TGGAGACAGC ATTGAAATTG TTCGCTTCTT TCACTGCTAT 464 AAACGTGGGG TTGATCGTGT TTTTGTTGAC CACCCAATGT TCTTGGAGAA AGTAAGCAAG 54706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAACGTGGGG TTGATCGTGT TTTTGTTGAC CACCCAATGT TCTTGGAGAA A......... 515 CATATTATGA TTATGAATAC ATTTTGAACA TCTTTTAACT CTACTGGTGC TTTTAAGGTT 54646 ||| .......... .......... .......... .......... .......... .......GTT 518 TGGGGCAAAA CTGGTTCAAA AATCTACGGC CCCAAAGCTG GACTGGATTA TCTGGACAAT 54586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGCAAAA CTGGTTCAAA AATCTACGGC CCCAAAGCTG GACTGGATTA TCTGGACAAT 578 GAACTTAGGT TCAGCTT-GT TGTGTCAAGT AAGTTACTTG TTATACTGTT GTCTTGGAAT 54527 |||||||||| ||||||| || |||||||| GAACTTAGGT TCAGCTTGGT TGTGTCAA.. .......... .......... .......... 606 TTTATGTGGC ATTTTACTTT TTGTCTTTAA TCGTTTTCTC AACCTTATTT TCTCAGGCAG 54467 |||| .......... .......... .......... .......... .......... ......GCAG 610 CCCTAGAGGC ACCTAGAGTT TTGAATTTGA ACAGTAGCAA CTACTTCTCA GGACCATATG 54407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTAGAGGC ACCTAGAGTT TTGAATTTGA ACAGTAGCAA CTACTTCTCA GGACCATATG 670 GTAACACATC CTAGTTTCAC TAGCAACCAT AGTATATCAT TGTAGGTAAT CAACGCCTAT 54347 .......... .......... .......... .......... .......... .......... 670 TCCTGCAGGA G-AGGATGTT CTCTTCATTG CCAATGATTG GCACACAGCT CTAATTCCCT 54288 || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA GAAGGATGTT CTCTTCATTG CCAATGATTG GCACACAGCT CTAATTCCCT 722 GC 54286 || GC 724 hqPGS_C08HBa0064M21.1-_SGN-E344703+ (55365 55031,54959 54879,54813 54715,54648 54559,54470 54407,54338 54286) ******************************************************************************** EST sequence 99 +strand 264 n (File: SGN-E264326+) 1 CAGCCCTTGC AGCCCGCGGA CATCGGGTAA TGACAATATC CCCCCGTTAT GACCAATACA 61 AAGATGCTTG GGATACTAGC GTTGCCCTTG AGGTCAAAGT TGGAGACAGC ATTGAAATTG 121 TTCGCTTCTT TCACTGCTAT AAACGTGGGG TTGATCGTGT TTTTGTTGAC CACCCAATGT 181 TCTTGGAGAA AGTTTGGGGC AAAACTGGTT CAAAAATCTA CGGCCCCAAA GCTGGACTGG 241 ATTATCTGGA CAATGAACTT AGGT Predicted gene structure (within gDNA segment 55669 to 53966): Exon 1 55041 55031 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 55030 54960 ( 71 n); Pd: 1.000 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 54959 54879 ( 81 n); cDNA 12 92 ( 81 n); score: 1.000 Intron 2 54878 54814 ( 65 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 54813 54715 ( 99 n); cDNA 93 191 ( 99 n); score: 1.000 Intron 3 54714 54649 ( 66 n); Pd: 0.985 (s: 1.00), Pa: 0.973 (s: 1.00) Exon 4 54648 54576 ( 73 n); cDNA 192 264 ( 73 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E264326+ 1.000 264 1.000 C PGS_C08HBa0064M21.1-_SGN-E264326+ (55041 55031,54959 54879,54813 54715,54648 54576) Alignment (genomic DNA sequence = upper lines): CAGCCCTTGC AGTAAGTCTT ACCTACTCAT GATTCATTCT TTTGTTTCTA ATGCACCAAT 54982 |||||||||| | CAGCCCTTGC A......... .......... .......... .......... .......... 11 TACAGCTTCA TTATCATTTT AGGCCCGCGG ACATCGGGTA ATGACAATAT CCCCCCGTTA 54922 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GCCCGCGG ACATCGGGTA ATGACAATAT CCCCCCGTTA 49 TGACCAATAC AAAGATGCTT GGGATACTAG CGTTGCCCTT GAGGTACTCC TTCCTATATA 54862 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGACCAATAC AAAGATGCTT GGGATACTAG CGTTGCCCTT GAG....... .......... 92 TACTTTTCAT ACATACAACA ATATATATTC AACAATGTTT ATCTGCAGGT CAAAGTTGGA 54802 || |||||||||| .......... .......... .......... .......... ........GT CAAAGTTGGA 104 GACAGCATTG AAATTGTTCG CTTCTTTCAC TGCTATAAAC GTGGGGTTGA TCGTGTTTTT 54742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAGCATTG AAATTGTTCG CTTCTTTCAC TGCTATAAAC GTGGGGTTGA TCGTGTTTTT 164 GTTGACCACC CAATGTTCTT GGAGAAAGTA AGCAAGCATA TTATGATTAT GAATACATTT 54682 |||||||||| |||||||||| ||||||| GTTGACCACC CAATGTTCTT GGAGAAA... .......... .......... .......... 191 TGAACATCTT TTAACTCTAC TGGTGCTTTT AAGGTTTGGG GCAAAACTGG TTCAAAAATC 54622 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTTTGGG GCAAAACTGG TTCAAAAATC 218 TACGGCCCCA AAGCTGGACT GGATTATCTG GACAATGAAC TTAGGT 54576 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TACGGCCCCA AAGCTGGACT GGATTATCTG GACAATGAAC TTAGGT 264 hqPGS_C08HBa0064M21.1-_SGN-E264326+ (55041 55031,54959 54879,54813 54715,54648 54576) ******************************************************************************** EST sequence 124 +strand 567 n (File: SGN-E334369+) 1 ACATGGCAAG CATCACAGCT TCACACTTTG TGTCAAGAAG CTCAAATGTC CAAACTTCAC 61 TAGACACCAA ATCAACCTTG TCACAGATAG GACTCAGGAA CCATACTCTG ACACACAATG 121 GGTTAAGGGC TGTTAACAAG CTTGATGGGC TCCAATCAAG AACTAATACT AAGGTAACAC 181 CCAAGATGAG ATCCACCAAG TCAGCTACCA TTGTTTGTGG AAAGGGAATG AACTTGATCT 241 TTGTGGGTAC TGAGGTTGGT CCTTGGAGCA AAACTGGTGG ACTAGGTGAT GTTCTTGGTG 301 GACTACCACC AGCCCTTGCA GCCCGCGGAC ATCGGGTAAT GACAATATCC CCCCGTTATG 361 ACCAATACAA AGATGCTTGG GATACTAGCG TTGCCCTTGA GGTCAAAGTT GGAGACAGCA 421 TTGAAATTGT TCGCTTCTTT CACTGCTATA AACGTGGGGT TGATCGTGTT TTTGTTGACC 481 ACCCAATGTT CTTGGAGAAA GTTTGGGGCA AAACTGGTTC AAAAATCTAC GGCCCCAAAG 541 CTGGACTGGA TTATCTGGAC AATGAAC Predicted gene structure (within gDNA segment 55950 to 53972): Exon 1 55350 55031 ( 320 n); cDNA 1 320 ( 320 n); score: 1.000 Intron 1 55030 54960 ( 71 n); Pd: 1.000 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 54959 54879 ( 81 n); cDNA 321 401 ( 81 n); score: 1.000 Intron 2 54878 54814 ( 65 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 54813 54715 ( 99 n); cDNA 402 500 ( 99 n); score: 1.000 Intron 3 54714 54649 ( 66 n); Pd: 0.985 (s: 1.00), Pa: 0.973 (s: 1.00) Exon 4 54648 54582 ( 67 n); cDNA 501 567 ( 67 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E334369+ 1.000 567 1.000 C PGS_C08HBa0064M21.1-_SGN-E334369+ (55350 55031,54959 54879,54813 54715,54648 54582) Alignment (genomic DNA sequence = upper lines): ACATGGCAAG CATCACAGCT TCACACTTTG TGTCAAGAAG CTCAAATGTC CAAACTTCAC 55291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGGCAAG CATCACAGCT TCACACTTTG TGTCAAGAAG CTCAAATGTC CAAACTTCAC 60 TAGACACCAA ATCAACCTTG TCACAGATAG GACTCAGGAA CCATACTCTG ACACACAATG 55231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACACCAA ATCAACCTTG TCACAGATAG GACTCAGGAA CCATACTCTG ACACACAATG 120 GGTTAAGGGC TGTTAACAAG CTTGATGGGC TCCAATCAAG AACTAATACT AAGGTAACAC 55171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTAAGGGC TGTTAACAAG CTTGATGGGC TCCAATCAAG AACTAATACT AAGGTAACAC 180 CCAAGATGAG ATCCACCAAG TCAGCTACCA TTGTTTGTGG AAAGGGAATG AACTTGATCT 55111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGATGAG ATCCACCAAG TCAGCTACCA TTGTTTGTGG AAAGGGAATG AACTTGATCT 240 TTGTGGGTAC TGAGGTTGGT CCTTGGAGCA AAACTGGTGG ACTAGGTGAT GTTCTTGGTG 55051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGGTAC TGAGGTTGGT CCTTGGAGCA AAACTGGTGG ACTAGGTGAT GTTCTTGGTG 300 GACTACCACC AGCCCTTGCA GTAAGTCTTA CCTACTCATG ATTCATTCTT TTGTTTCTAA 54991 |||||||||| |||||||||| GACTACCACC AGCCCTTGCA .......... .......... .......... .......... 320 TGCACCAATT ACAGCTTCAT TATCATTTTA GGCCCGCGGA CATCGGGTAA TGACAATATC 54931 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GCCCGCGGA CATCGGGTAA TGACAATATC 349 CCCCCGTTAT GACCAATACA AAGATGCTTG GGATACTAGC GTTGCCCTTG AGGTACTCCT 54871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CCCCCGTTAT GACCAATACA AAGATGCTTG GGATACTAGC GTTGCCCTTG AG........ 401 TCCTATATAT ACTTTTCATA CATACAACAA TATATATTCA ACAATGTTTA TCTGCAGGTC 54811 ||| .......... .......... .......... .......... .......... .......GTC 404 AAAGTTGGAG ACAGCATTGA AATTGTTCGC TTCTTTCACT GCTATAAACG TGGGGTTGAT 54751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTGGAG ACAGCATTGA AATTGTTCGC TTCTTTCACT GCTATAAACG TGGGGTTGAT 464 CGTGTTTTTG TTGACCACCC AATGTTCTTG GAGAAAGTAA GCAAGCATAT TATGATTATG 54691 |||||||||| |||||||||| |||||||||| |||||| CGTGTTTTTG TTGACCACCC AATGTTCTTG GAGAAA.... .......... .......... 500 AATACATTTT GAACATCTTT TAACTCTACT GGTGCTTTTA AGGTTTGGGG CAAAACTGGT 54631 |||||||| |||||||||| .......... .......... .......... .......... ..GTTTGGGG CAAAACTGGT 518 TCAAAAATCT ACGGCCCCAA AGCTGGACTG GATTATCTGG ACAATGAAC 54582 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCAAAAATCT ACGGCCCCAA AGCTGGACTG GATTATCTGG ACAATGAAC 567 hqPGS_C08HBa0064M21.1-_SGN-E334369+ (55350 55031,54959 54879,54813 54715,54648 54582) ******************************************************************************** EST sequence 126 -strand 439 n (File: SGN-E334525-) 1 TGCTCTTCTC TTCTGTCTCC TAGTATATCT AAAACTAAAC AACTCCTTGA CAAATAATAT 61 ATATAGAATT TTCTATTTGT AACGCCCATA TTAAGATTGA GGTTTGTTAT GGATTTCTCA 121 TTCTCTGAGC GTCCCTGTTA CTTAAATAAG GGATCAGCAC AACAAGTTTC CATGATAACA 181 AACAGGTTAT ATGCATAATT CTCTTATTTA AACATAACAT TTATATTTGG GAAAACAAAT 241 ATTATTCTCA TTCCTCTCTT CTATATTTAT TTGAAGAACC CTTCATTTAC CGGCTGGTGC 301 ATTGGGGCGC AAGGATTAAG GTCAGCGCTT CCATGCAGAA GAAACACAAA TATATATCCA 361 AGGTTAATTA ATTGCTGCTC ACAACTATAT ATTCAGCCAA CAACTATATA GTATATTAAA 421 TAGAATTGCA TTGCAAACA Predicted gene structure (within gDNA segment 55089 to 56737): Exon 1 55699 56137 ( 439 n); cDNA 1 439 ( 439 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E334525- 1.000 439 1.000 C PGS_C08HBa0064M21.1+_SGN-E334525- (55699 56137) Alignment (genomic DNA sequence = upper lines): TGCTCTTCTC TTCTGTCTCC TAGTATATCT AAAACTAAAC AACTCCTTGA CAAATAATAT 55758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCTC TTCTGTCTCC TAGTATATCT AAAACTAAAC AACTCCTTGA CAAATAATAT 60 ATATAGAATT TTCTATTTGT AACGCCCATA TTAAGATTGA GGTTTGTTAT GGATTTCTCA 55818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAGAATT TTCTATTTGT AACGCCCATA TTAAGATTGA GGTTTGTTAT GGATTTCTCA 120 TTCTCTGAGC GTCCCTGTTA CTTAAATAAG GGATCAGCAC AACAAGTTTC CATGATAACA 55878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTGAGC GTCCCTGTTA CTTAAATAAG GGATCAGCAC AACAAGTTTC CATGATAACA 180 AACAGGTTAT ATGCATAATT CTCTTATTTA AACATAACAT TTATATTTGG GAAAACAAAT 55938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGGTTAT ATGCATAATT CTCTTATTTA AACATAACAT TTATATTTGG GAAAACAAAT 240 ATTATTCTCA TTCCTCTCTT CTATATTTAT TTGAAGAACC CTTCATTTAC CGGCTGGTGC 55998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTCTCA TTCCTCTCTT CTATATTTAT TTGAAGAACC CTTCATTTAC CGGCTGGTGC 300 ATTGGGGCGC AAGGATTAAG GTCAGCGCTT CCATGCAGAA GAAACACAAA TATATATCCA 56058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGGCGC AAGGATTAAG GTCAGCGCTT CCATGCAGAA GAAACACAAA TATATATCCA 360 AGGTTAATTA ATTGCTGCTC ACAACTATAT ATTCAGCCAA CAACTATATA GTATATTAAA 56118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTAATTA ATTGCTGCTC ACAACTATAT ATTCAGCCAA CAACTATATA GTATATTAAA 420 TAGAATTGCA TTGCAAACA 56137 |||||||||| ||||||||| TAGAATTGCA TTGCAAACA 439 hqPGS_C08HBa0064M21.1+_SGN-E334525- (55699 56137) ******************************************************************************** EST sequence 114 +strand 686 n (File: SGN-E376806+) 1 ACATACTACT GCGTCACTAA GGGTGTACCA TGCCCTTCTG TGCCCCGTCG CAACAAACCA 61 AGACGTGTTG ATCTCTACTA TTCAAGTTGG TTCATCCGCG CAGCTGAATC CAAGAGAGAT 121 GGTCGGATGA CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG 181 GAAATTGCCA AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT 241 GGTTTACGTG CATACCAGAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC 301 ATGGCGCAAG TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC 361 TATCTTTCTG AGATTGAGCG TGAGGATTCA CCTGAGAAGC CTGCAGGGAG GATCATACCG 421 CGGTTCTTAG TTGTTGGTGG GGCAATTGCC CTTGCTTGTA GTCTTGATCG TGGACTCCTG 481 ACAAAAGCGG TTATATTTGG AGTTGCTAGA AGGTTTGCAG GGATTGGGAA AAGGTTGTGA 541 AACTGCTCTA GTATGGGTCG AGGCATTTTT ATATACATCA TTTGATCGAT AAGAGAACAT 601 ACTTTGGCAG CAAGGTAGCC ACTGTGAAGA GCTAGGTCCT CCTCCATAGT TATATTATGT 661 TGTCTTCTGT CAAGCTGCAA GGCAGC Predicted gene structure (within gDNA segment 58331 to 56072): Exon 1 57539 57458 ( 82 n); cDNA 22 103 ( 82 n); score: 1.000 Intron 1 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 57264 56682 ( 583 n); cDNA 104 686 ( 583 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E376806+ 1.000 665 0.969 C PGS_C08HBa0064M21.1-_SGN-E376806+ (57539 57458,57264 56682) Alignment (genomic DNA sequence = upper lines): GGTGTACCAT GCCCTTCTGT GCCCCGTCGC AACAAACCAA GACGTGTTGA TCTCTACTAT 57480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTACCAT GCCCTTCTGT GCCCCGTCGC AACAAACCAA GACGTGTTGA TCTCTACTAT 81 TCAAGTTGGT TCATCCGCGC AGGTAATTTG AAGTGATATT GCTAGCTTGA TTGCTATACT 57420 |||||||||| |||||||||| || TCAAGTTGGT TCATCCGCGC AG........ .......... .......... .......... 103 TCCAATAAAA TTATGGAATC TACTGAACCA ATTATGATGA TCAACCATCA AATGTAGTCT 57360 .......... .......... .......... .......... .......... .......... 103 TAAGACTGAA ACTGGAGATG TTTCATTTGA ATCACTGAGA AGAGTTATTT TATGACTATA 57300 .......... .......... .......... .......... .......... .......... 103 CATCTGACTG CCTTTTAATT CTTTTGCATG AACAGCTGAA TCCAAGAGAG ATGGTCGGAT 57240 ||||| |||||||||| |||||||||| .......... .......... .......... .....CTGAA TCCAAGAGAG ATGGTCGGAT 128 GACTGCCTGT GAAGTATTAC TCTTTCATTA TGAAGACATG GGTATACCTT GGGAAATTGC 57180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGCCTGT GAAGTATTAC TCTTTCATTA TGAAGACATG GGTATACCTT GGGAAATTGC 188 CAAACTCGGG GTAAGGCAAG GTATGTGGGG AGCTGTGAGG AAGATTGACC CTGGTTTACG 57120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCGGG GTAAGGCAAG GTATGTGGGG AGCTGTGAGG AAGATTGACC CTGGTTTACG 248 TGCATACCAG AGACATAGAG CGTCTGGAGA CCCAATTTCA CGATGTGCTT TCATGGCGCA 57060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATACCAG AGACATAGAG CGTCTGGAGA CCCAATTTCA CGATGTGCTT TCATGGCGCA 308 AGTCAACACC AAAGTTGATA TTGAGAATCT CAGATCAATG GGGAGCGAAA CCTATCTTTC 57000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAACACC AAAGTTGATA TTGAGAATCT CAGATCAATG GGGAGCGAAA CCTATCTTTC 368 TGAGATTGAG CGTGAGGATT CACCTGAGAA GCCTGCAGGG AGGATCATAC CGCGGTTCTT 56940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATTGAG CGTGAGGATT CACCTGAGAA GCCTGCAGGG AGGATCATAC CGCGGTTCTT 428 AGTTGTTGGT GGGGCAATTG CCCTTGCTTG TAGTCTTGAT CGTGGACTCC TGACAAAAGC 56880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTTGGT GGGGCAATTG CCCTTGCTTG TAGTCTTGAT CGTGGACTCC TGACAAAAGC 488 GGTTATATTT GGAGTTGCTA GAAGGTTTGC AGGGATTGGG AAAAGGTTGT GAAACTGCTC 56820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTATATTT GGAGTTGCTA GAAGGTTTGC AGGGATTGGG AAAAGGTTGT GAAACTGCTC 548 TAGTATGGGT CGAGGCATTT TTATATACAT CATTTGATCG ATAAGAGAAC ATACTTTGGC 56760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATGGGT CGAGGCATTT TTATATACAT CATTTGATCG ATAAGAGAAC ATACTTTGGC 608 AGCAAGGTAG CCACTGTGAA GAGCTAGGTC CTCCTCCATA GTTATATTAT GTTGTCTTCT 56700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAGGTAG CCACTGTGAA GAGCTAGGTC CTCCTCCATA GTTATATTAT GTTGTCTTCT 668 GTCAAGCTGC AAGGCAGC 56682 |||||||||| |||||||| GTCAAGCTGC AAGGCAGC 686 hqPGS_C08HBa0064M21.1-_SGN-E376806+ (57539 57458,57264 56682) ******************************************************************************** EST sequence 127 +strand 585 n (File: SGN-E288015+) 1 TCTACTATTC AAGTTGGTTC AGCCGCGCAG CTGAATCCAA GAGAGATGGT CGGATGACTG 61 CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT ACCTTGGGAA ATTGCCAAAC 121 TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT TGACCCTGGT TTACGTGCAT 181 ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG TGCTTTCATG GCGCAAGTCA 241 ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG CGAAACCTAT CTTTCTGAGA 301 TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT CATACCGCGG TTCTTAGTTG 361 TTGGTGGGGC AATTGCCCTT GCTTGTAGTC TTGATCGTGG ACTCCTGACA AAAGCGGTTA 421 TATTTGGAGT TGCTAGAAGG TTTGCAGGGA TTGGGAAAAG GTTGTGAAAC TGCTCTAGTA 481 TGGGTCGAGG CATTTTTATA TACATCATTT GATCGATAAG AGAACATACT TTGGCAGCAA 541 GGTAGCCACT GTGAAGAGCT AGGTCCTCCT CCATAGNTAT ATTAT Predicted gene structure (within gDNA segment 58137 to 56019): Exon 1 57487 57458 ( 30 n); cDNA 1 30 ( 30 n); score: 0.967 Intron 1 57457 57265 ( 193 n); Pd: 0.983 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 57264 56710 ( 555 n); cDNA 31 585 ( 555 n); score: 0.998 MATCH C08HBa0064M21.1- SGN-E288015+ 0.998 585 1.000 C PGS_C08HBa0064M21.1-_SGN-E288015+ (57487 57458,57264 56710) Alignment (genomic DNA sequence = upper lines): TCTACTATTC AAGTTGGTTC ATCCGCGCAG GTAATTTGAA GTGATATTGC TAGCTTGATT 57428 |||||||||| |||||||||| | |||||||| TCTACTATTC AAGTTGGTTC AGCCGCGCAG .......... .......... .......... 30 GCTATACTTC CAATAAAATT ATGGAATCTA CTGAACCAAT TATGATGATC AACCATCAAA 57368 .......... .......... .......... .......... .......... .......... 30 TGTAGTCTTA AGACTGAAAC TGGAGATGTT TCATTTGAAT CACTGAGAAG AGTTATTTTA 57308 .......... .......... .......... .......... .......... .......... 30 TGACTATACA TCTGACTGCC TTTTAATTCT TTTGCATGAA CAGCTGAATC CAAGAGAGAT 57248 ||||||| |||||||||| .......... .......... .......... .......... ...CTGAATC CAAGAGAGAT 47 GGTCGGATGA CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG 57188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCGGATGA CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG 107 GAAATTGCCA AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT 57128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTGCCA AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT 167 GGTTTACGTG CATACCAGAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC 57068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTACGTG CATACCAGAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC 227 ATGGCGCAAG TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC 57008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGCAAG TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC 287 TATCTTTCTG AGATTGAGCG TGAGGATTCA CCTGAGAAGC CTGCAGGGAG GATCATACCG 56948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTTTCTG AGATTGAGCG TGAGGATTCA CCTGAGAAGC CTGCAGGGAG GATCATACCG 347 CGGTTCTTAG TTGTTGGTGG GGCAATTGCC CTTGCTTGTA GTCTTGATCG TGGACTCCTG 56888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTCTTAG TTGTTGGTGG GGCAATTGCC CTTGCTTGTA GTCTTGATCG TGGACTCCTG 407 ACAAAAGCGG TTATATTTGG AGTTGCTAGA AGGTTTGCAG GGATTGGGAA AAGGTTGTGA 56828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAGCGG TTATATTTGG AGTTGCTAGA AGGTTTGCAG GGATTGGGAA AAGGTTGTGA 467 AACTGCTCTA GTATGGGTCG AGGCATTTTT ATATACATCA TTTGATCGAT AAGAGAACAT 56768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCTCTA GTATGGGTCG AGGCATTTTT ATATACATCA TTTGATCGAT AAGAGAACAT 527 ACTTTGGCAG CAAGGTAGCC ACTGTGAAGA GCTAGGTCCT CCTCCATAGT TATATTAT 56710 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||| ACTTTGGCAG CAAGGTAGCC ACTGTGAAGA GCTAGGTCCT CCTCCATAGN TATATTAT 585 hqPGS_C08HBa0064M21.1-_SGN-E288015+ (57487 57458,57264 56710) ******************************************************************************** EST sequence 94 +strand 442 n (File: SGN-E277528+) 1 TCGAATTTGG GAGTCAGGGC GGACATACTA CTGCGTCACT AAGGGTGTAC CATGCCCTTC 61 TGTGCCCCGT CGCAACAAAC CAAGACGTGT TGATCTCTAC TATTCAAGTT GGTTCATCCG 121 CGCAGCTGAA TCCAAGAGAG ATGGTCGGAT GACTGCCTGT GAAGTATTAC TCTTTCATTA 181 TGAAGACATG GGTATACCTT GGGAAATTGC CAAACTCGGG GTAAGGCAAG GTATGTGGGG 241 AGCTGTGAGG AAGATTGACC CTGGTTTACG TGCATACCAT AGACATAGAG CGTCTGGAGA 301 CCCAATTTCA CGATGTGCTT TCATGGCGCA AGTCAACACC AAAGTTGATA TTGAGAATCT 361 CAGATCAATG GGGAGCGAAA CCTATCTTTC TGAGATTGAG CGTGAGGATT CACCTGAGAA 421 GCCTGCAGGG AGGATCATAC CG Predicted gene structure (within gDNA segment 59517 to 56338): Exon 1 58917 58875 ( 43 n); cDNA 1 43 ( 43 n); score: 1.000 Intron 1 58874 57540 (1335 n); Pd: 0.979 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 57539 57458 ( 82 n); cDNA 44 125 ( 82 n); score: 1.000 Intron 2 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 57264 56948 ( 317 n); cDNA 126 442 ( 317 n); score: 0.997 MATCH C08HBa0064M21.1- SGN-E277528+ 0.997 442 1.000 C PGS_C08HBa0064M21.1-_SGN-E277528+ (58917 58875,57539 57458,57264 56948) Alignment (genomic DNA sequence = upper lines): TCGAATTTGG GAGTCAGGGC GGACATACTA CTGCGTCACT AAGGTAAGAG AATGAAGGCT 58858 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCGAATTTGG GAGTCAGGGC GGACATACTA CTGCGTCACT AAG....... .......... 43 TGTCATAAGT GCACAAGTAG TATGTGCCAA TTGTGGATGT CAAACAAGCA TACACTTTAC 58798 .......... .......... .......... .......... .......... .......... 43 TGTTAGAATC ATCTTCTCTT TTTTTTTTGT TATGGCAAAC AATGTTTTTC AATATGGCAT 58738 .......... .......... .......... .......... .......... .......... 43 GCCATTTGTT ATCTAACTCG ATATCTCTTA TATGAGTGAA AGCCAGATAA TAAGAGATAG 58678 .......... .......... .......... .......... .......... .......... 43 AAATTGATGA ATAGCTTTTA AGTGTGTCAT ACAGTTTCAT ACTTTTAGAC ATTGTAGGTT 58618 .......... .......... .......... .......... .......... .......... 43 AGTTGTGAAC CTGATGAGCT ATTTTAAATT TTTCATTATC TGAGTAGAAC TCAAAGAAGT 58558 .......... .......... .......... .......... .......... .......... 43 GGAGTTAGTT GTATCAAATC AGCTTAAGAG GGTCCTCCTC TTTCTGATGT GTTTCTTTTG 58498 .......... .......... .......... .......... .......... .......... 43 CACTTAGTAT ATTAGTTGTG AACTGAAGAA CGATAAGCAA AGTTATGTTT TCTGTTATCT 58438 .......... .......... .......... .......... .......... .......... 43 AAGTAAATAC AGAGAAATTG GTGTACAAGT ATGCAATTGA AATTGAAGAG AGTGCAGTAA 58378 .......... .......... .......... .......... .......... .......... 43 CTTCTTGCCA AACCATTTTC CTCCCCTGCT TTTGGCATCT TTTTTTTTTT GAGATTTTTG 58318 .......... .......... .......... .......... .......... .......... 43 GGATAGACTA TGCTGTGCAT GTGTTAATCT GCACTCATTA ACGGTCAGAA AGGCAAAAAT 58258 .......... .......... .......... .......... .......... .......... 43 GGATTTGATG GTGTGTTCCC TTCAAAGGTA GCAGTGAACA AGACTGCAGC GAGCAGTCTA 58198 .......... .......... .......... .......... .......... .......... 43 AGGCTCCATT ACCCTAGTAA CTTGTGGAGA TAAACGGATG AACCTTCCCC CTCAATGAAA 58138 .......... .......... .......... .......... .......... .......... 43 CTTTCTTCAT CCTTGTCACT TCCGATAGTT GTCCATGGGG GCTGTGTGAA ATACTTAAAT 58078 .......... .......... .......... .......... .......... .......... 43 AGGGATTCTA TGGTGATGAT GAGGAATCAC TCATACCTTG TACATATTGC ATACAAGACC 58018 .......... .......... .......... .......... .......... .......... 43 TATTCCTTCC TACCTTCGTG GTTATCATCA GGATCTAACA AATAAATTGT TTATATGATA 57958 .......... .......... .......... .......... .......... .......... 43 TACCAATGTT TATCTCAATC AACCATTTCA TACTACTTAT GGTGACCATC TGAGTCAAGC 57898 .......... .......... .......... .......... .......... .......... 43 CTCCGCTCTT TGATACTTAC TGTCTTCAAA GTGAAGCCTC TCCTACTTAC TATTAGTTGA 57838 .......... .......... .......... .......... .......... .......... 43 CTGGAGTTGG ATATTTCCTG TCAGATTTGC ATTTGAATAG TTAAGATACT TCATAATTAG 57778 .......... .......... .......... .......... .......... .......... 43 CATTCAAAGG AGGAATGTTT ATACCTGTAG GAGAGGGGAA GACCCAAGAT TAAATTGCAG 57718 .......... .......... .......... .......... .......... .......... 43 GTATCCTAAT AGGAGATCCT ACCTCATGTT TTTCATTGTC TGGGTTGACT TGATATTGGT 57658 .......... .......... .......... .......... .......... .......... 43 TGACACCTGA CGGTGCTTCC TGTTTTATTT TTTTTAGCTG CCGTCACTCA CTTCATACTC 57598 .......... .......... .......... .......... .......... .......... 43 TCCAATGTTA CATCATTTTG CTGAAATCTT GAATAATCTT GATTTTTACA TGGTTCAGGG 57538 || .......... .......... .......... .......... .......... ........GG 45 TGTACCATGC CCTTCTGTGC CCCGTCGCAA CAAACCAAGA CGTGTTGATC TCTACTATTC 57478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCATGC CCTTCTGTGC CCCGTCGCAA CAAACCAAGA CGTGTTGATC TCTACTATTC 105 AAGTTGGTTC ATCCGCGCAG GTAATTTGAA GTGATATTGC TAGCTTGATT GCTATACTTC 57418 |||||||||| |||||||||| AAGTTGGTTC ATCCGCGCAG .......... .......... .......... .......... 125 CAATAAAATT ATGGAATCTA CTGAACCAAT TATGATGATC AACCATCAAA TGTAGTCTTA 57358 .......... .......... .......... .......... .......... .......... 125 AGACTGAAAC TGGAGATGTT TCATTTGAAT CACTGAGAAG AGTTATTTTA TGACTATACA 57298 .......... .......... .......... .......... .......... .......... 125 TCTGACTGCC TTTTAATTCT TTTGCATGAA CAGCTGAATC CAAGAGAGAT GGTCGGATGA 57238 ||||||| |||||||||| |||||||||| .......... .......... .......... ...CTGAATC CAAGAGAGAT GGTCGGATGA 152 CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG GAAATTGCCA 57178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG GAAATTGCCA 212 AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT GGTTTACGTG 57118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT GGTTTACGTG 272 CATACCAGAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC ATGGCGCAAG 57058 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCATAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC ATGGCGCAAG 332 TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC TATCTTTCTG 56998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC TATCTTTCTG 392 AGATTGAGCG TGAGGATTCA CCTGAGAAGC CTGCAGGGAG GATCATACCG 56948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGAGCG TGAGGATTCA CCTGAGAAGC CTGCAGGGAG GATCATACCG 442 hqPGS_C08HBa0064M21.1-_SGN-E277528+ (58917 58875,57539 57458,57264 56948) ******************************************************************************** EST sequence 98 +strand 370 n (File: SGN-E231069+) 1 ACATACTACT GCGTCACTAA GGGTGTACCA TGCCCTTCTG TGCCCCGTCG CAACAAACCA 61 AGACGTGTTG ATCTCTACTA TTCAAGTTGG TTCATCCGCG CAGCTGAATC CAAGAGAGAT 121 GGTCGGATGA CTGCCTGTGA AGTATTACTC TTTCATTATG AAGACATGGG TATACCTTGG 181 GAAATTGCCA AACTCGGGGT AAGGCAAGGT ATGTGGGGAG CTGTGAGGAA GATTGACCCT 241 GGTTTACGTG CATACCAGAG ACATAGAGCG TCTGGAGACC CAATTTCACG ATGTGCTTTC 301 ATGGCGCAAG TCAACACCAA AGTTGATATT GAGAATCTCA GATCAATGGG GAGCGAAACC 361 TATCTTTCTG Predicted gene structure (within gDNA segment 58331 to 56388): Exon 1 57539 57458 ( 82 n); cDNA 22 103 ( 82 n); score: 1.000 Intron 1 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 57264 56998 ( 267 n); cDNA 104 370 ( 267 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E231069+ 1.000 349 0.943 C PGS_C08HBa0064M21.1-_SGN-E231069+ (57539 57458,57264 56998) Alignment (genomic DNA sequence = upper lines): GGTGTACCAT GCCCTTCTGT GCCCCGTCGC AACAAACCAA GACGTGTTGA TCTCTACTAT 57480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTACCAT GCCCTTCTGT GCCCCGTCGC AACAAACCAA GACGTGTTGA TCTCTACTAT 81 TCAAGTTGGT TCATCCGCGC AGGTAATTTG AAGTGATATT GCTAGCTTGA TTGCTATACT 57420 |||||||||| |||||||||| || TCAAGTTGGT TCATCCGCGC AG........ .......... .......... .......... 103 TCCAATAAAA TTATGGAATC TACTGAACCA ATTATGATGA TCAACCATCA AATGTAGTCT 57360 .......... .......... .......... .......... .......... .......... 103 TAAGACTGAA ACTGGAGATG TTTCATTTGA ATCACTGAGA AGAGTTATTT TATGACTATA 57300 .......... .......... .......... .......... .......... .......... 103 CATCTGACTG CCTTTTAATT CTTTTGCATG AACAGCTGAA TCCAAGAGAG ATGGTCGGAT 57240 ||||| |||||||||| |||||||||| .......... .......... .......... .....CTGAA TCCAAGAGAG ATGGTCGGAT 128 GACTGCCTGT GAAGTATTAC TCTTTCATTA TGAAGACATG GGTATACCTT GGGAAATTGC 57180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGCCTGT GAAGTATTAC TCTTTCATTA TGAAGACATG GGTATACCTT GGGAAATTGC 188 CAAACTCGGG GTAAGGCAAG GTATGTGGGG AGCTGTGAGG AAGATTGACC CTGGTTTACG 57120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCGGG GTAAGGCAAG GTATGTGGGG AGCTGTGAGG AAGATTGACC CTGGTTTACG 248 TGCATACCAG AGACATAGAG CGTCTGGAGA CCCAATTTCA CGATGTGCTT TCATGGCGCA 57060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATACCAG AGACATAGAG CGTCTGGAGA CCCAATTTCA CGATGTGCTT TCATGGCGCA 308 AGTCAACACC AAAGTTGATA TTGAGAATCT CAGATCAATG GGGAGCGAAA CCTATCTTTC 57000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAACACC AAAGTTGATA TTGAGAATCT CAGATCAATG GGGAGCGAAA CCTATCTTTC 368 TG 56998 || TG 370 hqPGS_C08HBa0064M21.1-_SGN-E231069+ (57539 57458,57264 56998) ******************************************************************************** EST sequence 121 +strand 626 n (File: SGN-E238374+) 1 TTCTACACCA AATATGTCCT ATCAGGCTTG GCGTAGAGAT CCCGAGACGG GACCTCCACA 61 ATATCGTAGC AGAACTGTAT ATGAGGATGC CACTCCAGAA ATGTTGAGGG ATTTCTTCTG 121 GGAAGATGAA TTTCGATTGA AGTGGGATGA CATGCTTATA CATGCTGAAA CATTAGAAGA 181 GTGTCCTACC ACTGGAACCA TGGTGGTTCA GTGGGTGCGT AAGTTTCCCT TCTTTTGCAG 241 TGATAGAGAG TACATTATAG GCCGTCGAAT TTGGGAGTCA GGGCGGACAT ACTACTGCGT 301 CACTAAGGGT GTACCATGCC CTTCTGTGCC CCGTCGCAAC AAACCAAGAC GTGTTGATCT 361 CTACTATTCA AGTTGGTTCA TCCGCGCAGC TGAATCCAAG AGAGATGGTC GGATGACTGC 421 CTGTGAAGTA TTACTCTTTC ATTATGAAGA CATGGGTATA CCTTGGGAAA TTGCCAAACT 481 CGGGGTAAGG CAAGGTATGT GGGGAGCTGT GAGGAAGATT GACCCTGGTT TACGTGCATA 541 CCATAGACAT AGAGCGTCTG GAGACCCAAT TTCACGATGT GCTTTCATGG CGCATGTCAA 601 CACCAAAGTT GATATTGAGA ATCTCA Predicted gene structure (within gDNA segment 59965 to 56418): Exon 1 59365 59320 ( 46 n); cDNA 1 46 ( 46 n); score: 1.000 Intron 1 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 2 59218 59042 ( 177 n); cDNA 47 223 ( 177 n); score: 1.000 Intron 2 59041 58959 ( 83 n); Pd: 0.869 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 3 58958 58875 ( 84 n); cDNA 224 307 ( 84 n); score: 1.000 Intron 3 58874 57540 (1335 n); Pd: 0.979 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 57539 57458 ( 82 n); cDNA 308 389 ( 82 n); score: 1.000 Intron 4 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 57264 57028 ( 237 n); cDNA 390 626 ( 237 n); score: 0.992 MATCH C08HBa0064M21.1- SGN-E238374+ 0.997 626 1.000 C PGS_C08HBa0064M21.1-_SGN-E238374+ (59365 59320,59218 59042,58958 58875,57539 57458,57264 57028) Alignment (genomic DNA sequence = upper lines): TTCTACACCA AATATGTCCT ATCAGGCTTG GCGTAGAGAT CCCGAGGTAG CTTTCTCTCC 59306 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCTACACCA AATATGTCCT ATCAGGCTTG GCGTAGAGAT CCCGAG.... .......... 46 CCTGGCCTTA TAGTATGTGT AATGATAGGA GGGATTTAAT TAGTTTGCAC TTTCCTTTAA 59246 .......... .......... .......... .......... .......... .......... 46 TTGGATTACA TTTTAATGTC ATGCTAGACG GGACCTCCAC AATATCGTAG CAGAACTGTA 59186 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......ACG GGACCTCCAC AATATCGTAG CAGAACTGTA 79 TATGAGGATG CCACTCCAGA AATGTTGAGG GATTTCTTCT GGGAAGATGA ATTTCGATTG 59126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAGGATG CCACTCCAGA AATGTTGAGG GATTTCTTCT GGGAAGATGA ATTTCGATTG 139 AAGTGGGATG ACATGCTTAT ACATGCTGAA ACATTAGAAG AGTGTCCTAC CACTGGAACC 59066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGGATG ACATGCTTAT ACATGCTGAA ACATTAGAAG AGTGTCCTAC CACTGGAACC 199 ATGGTGGTTC AGTGGGTGCG TAAGGTATTA TAGTGGTCTG TCTTCACTTG TGCATACTCT 59006 |||||||||| |||||||||| |||| ATGGTGGTTC AGTGGGTGCG TAAG...... .......... .......... .......... 223 TGGATAGCCT AATTGAAGTA TGACTAACCA AAATCATTCT GGTCCAGTTT CCCTTCTTTT 58946 ||| |||||||||| .......... .......... .......... .......... .......TTT CCCTTCTTTT 236 GCAGTGATAG AGAGTACATT ATAGGCCGTC GAATTTGGGA GTCAGGGCGG ACATACTACT 58886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTGATAG AGAGTACATT ATAGGCCGTC GAATTTGGGA GTCAGGGCGG ACATACTACT 296 GCGTCACTAA GGTAAGAGAA TGAAGGCTTG TCATAAGTGC ACAAGTAGTA TGTGCCAATT 58826 |||||||||| | GCGTCACTAA G......... .......... .......... .......... .......... 307 GTGGATGTCA AACAAGCATA CACTTTACTG TTAGAATCAT CTTCTCTTTT TTTTTTGTTA 58766 .......... .......... .......... .......... .......... .......... 307 TGGCAAACAA TGTTTTTCAA TATGGCATGC CATTTGTTAT CTAACTCGAT ATCTCTTATA 58706 .......... .......... .......... .......... .......... .......... 307 TGAGTGAAAG CCAGATAATA AGAGATAGAA ATTGATGAAT AGCTTTTAAG TGTGTCATAC 58646 .......... .......... .......... .......... .......... .......... 307 AGTTTCATAC TTTTAGACAT TGTAGGTTAG TTGTGAACCT GATGAGCTAT TTTAAATTTT 58586 .......... .......... .......... .......... .......... .......... 307 TCATTATCTG AGTAGAACTC AAAGAAGTGG AGTTAGTTGT ATCAAATCAG CTTAAGAGGG 58526 .......... .......... .......... .......... .......... .......... 307 TCCTCCTCTT TCTGATGTGT TTCTTTTGCA CTTAGTATAT TAGTTGTGAA CTGAAGAACG 58466 .......... .......... .......... .......... .......... .......... 307 ATAAGCAAAG TTATGTTTTC TGTTATCTAA GTAAATACAG AGAAATTGGT GTACAAGTAT 58406 .......... .......... .......... .......... .......... .......... 307 GCAATTGAAA TTGAAGAGAG TGCAGTAACT TCTTGCCAAA CCATTTTCCT CCCCTGCTTT 58346 .......... .......... .......... .......... .......... .......... 307 TGGCATCTTT TTTTTTTTGA GATTTTTGGG ATAGACTATG CTGTGCATGT GTTAATCTGC 58286 .......... .......... .......... .......... .......... .......... 307 ACTCATTAAC GGTCAGAAAG GCAAAAATGG ATTTGATGGT GTGTTCCCTT CAAAGGTAGC 58226 .......... .......... .......... .......... .......... .......... 307 AGTGAACAAG ACTGCAGCGA GCAGTCTAAG GCTCCATTAC CCTAGTAACT TGTGGAGATA 58166 .......... .......... .......... .......... .......... .......... 307 AACGGATGAA CCTTCCCCCT CAATGAAACT TTCTTCATCC TTGTCACTTC CGATAGTTGT 58106 .......... .......... .......... .......... .......... .......... 307 CCATGGGGGC TGTGTGAAAT ACTTAAATAG GGATTCTATG GTGATGATGA GGAATCACTC 58046 .......... .......... .......... .......... .......... .......... 307 ATACCTTGTA CATATTGCAT ACAAGACCTA TTCCTTCCTA CCTTCGTGGT TATCATCAGG 57986 .......... .......... .......... .......... .......... .......... 307 ATCTAACAAA TAAATTGTTT ATATGATATA CCAATGTTTA TCTCAATCAA CCATTTCATA 57926 .......... .......... .......... .......... .......... .......... 307 CTACTTATGG TGACCATCTG AGTCAAGCCT CCGCTCTTTG ATACTTACTG TCTTCAAAGT 57866 .......... .......... .......... .......... .......... .......... 307 GAAGCCTCTC CTACTTACTA TTAGTTGACT GGAGTTGGAT ATTTCCTGTC AGATTTGCAT 57806 .......... .......... .......... .......... .......... .......... 307 TTGAATAGTT AAGATACTTC ATAATTAGCA TTCAAAGGAG GAATGTTTAT ACCTGTAGGA 57746 .......... .......... .......... .......... .......... .......... 307 GAGGGGAAGA CCCAAGATTA AATTGCAGGT ATCCTAATAG GAGATCCTAC CTCATGTTTT 57686 .......... .......... .......... .......... .......... .......... 307 TCATTGTCTG GGTTGACTTG ATATTGGTTG ACACCTGACG GTGCTTCCTG TTTTATTTTT 57626 .......... .......... .......... .......... .......... .......... 307 TTTAGCTGCC GTCACTCACT TCATACTCTC CAATGTTACA TCATTTTGCT GAAATCTTGA 57566 .......... .......... .......... .......... .......... .......... 307 ATAATCTTGA TTTTTACATG GTTCAGGGTG TACCATGCCC TTCTGTGCCC CGTCGCAACA 57506 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGTG TACCATGCCC TTCTGTGCCC CGTCGCAACA 341 AACCAAGACG TGTTGATCTC TACTATTCAA GTTGGTTCAT CCGCGCAGGT AATTTGAAGT 57446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AACCAAGACG TGTTGATCTC TACTATTCAA GTTGGTTCAT CCGCGCAG.. .......... 389 GATATTGCTA GCTTGATTGC TATACTTCCA ATAAAATTAT GGAATCTACT GAACCAATTA 57386 .......... .......... .......... .......... .......... .......... 389 TGATGATCAA CCATCAAATG TAGTCTTAAG ACTGAAACTG GAGATGTTTC ATTTGAATCA 57326 .......... .......... .......... .......... .......... .......... 389 CTGAGAAGAG TTATTTTATG ACTATACATC TGACTGCCTT TTAATTCTTT TGCATGAACA 57266 .......... .......... .......... .......... .......... .......... 389 GCTGAATCCA AGAGAGATGG TCGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA 57206 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .CTGAATCCA AGAGAGATGG TCGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA 448 GACATGGGTA TACCTTGGGA AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT 57146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATGGGTA TACCTTGGGA AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT 508 GTGAGGAAGA TTGACCCTGG TTTACGTGCA TACCAGAGAC ATAGAGCGTC TGGAGACCCA 57086 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GTGAGGAAGA TTGACCCTGG TTTACGTGCA TACCATAGAC ATAGAGCGTC TGGAGACCCA 568 ATTTCACGAT GTGCTTTCAT GGCGCAAGTC AACACCAAAG TTGATATTGA GAATCTCA 57028 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||| ATTTCACGAT GTGCTTTCAT GGCGCATGTC AACACCAAAG TTGATATTGA GAATCTCA 626 hqPGS_C08HBa0064M21.1-_SGN-E238374+ (59365 59320,59218 59042,58958 58875,57539 57458,57264 57028) ******************************************************************************** EST sequence 105 +strand 553 n (File: SGN-E233406+) 1 TCCCGAGACG GGACCTCCAC AATATCGTAG CAGAACTGTA TATGAGGATG CCACTCCAGA 61 AATGTTGAGG GATTTCTTCT GGGAAGATGA ATTTCGATTG AAGTGGGATG ACATGCTTAT 121 ACATGCTGAA ACATTAGAAG AGTGTCCTAC CACTGGAACC ATGGTGGTTC AGTGGGTGCG 181 TAAGTTTCCC TTCTTTTGCA GTGATAGAGA GTACATTATA GGCCGTCGAA TTTGGGAGTC 241 AGGGCGGACA TACTACTGCG TCACTAAGGG TGTACCATGC CCTTCTGTGC CCCGTCGCAA 301 CAAACCAAGA CGTGTTGATC TCTACTATTC AAGTTGGTTC ATCCGCGCAG CTGAATCCAA 361 GAGAGATGGT CGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 421 ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 481 TGACCCTGGT TTACGTGCAT ACCATAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 541 TGCTTTCATG GCG Predicted gene structure (within gDNA segment 59870 to 56452): Exon 1 59326 59320 ( 7 n); cDNA 1 7 ( 7 n); score: 1.000 Intron 1 59319 59219 ( 101 n); Pd: 0.976 (s: 0), Pa: 0.987 (s: 1.00) Exon 2 59218 59042 ( 177 n); cDNA 8 184 ( 177 n); score: 1.000 Intron 2 59041 58959 ( 83 n); Pd: 0.869 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 3 58958 58875 ( 84 n); cDNA 185 268 ( 84 n); score: 1.000 Intron 3 58874 57540 (1335 n); Pd: 0.979 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 57539 57458 ( 82 n); cDNA 269 350 ( 82 n); score: 1.000 Intron 4 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 57264 57062 ( 203 n); cDNA 351 553 ( 203 n); score: 0.995 MATCH C08HBa0064M21.1- SGN-E233406+ 0.998 553 1.000 C PGS_C08HBa0064M21.1-_SGN-E233406+ (59326 59320,59218 59042,58958 58875,57539 57458,57264 57062) Alignment (genomic DNA sequence = upper lines): TCCCGAGGTA GCTTTCTCTC CCCTGGCCTT ATAGTATGTG TAATGATAGG AGGGATTTAA 59267 ||||||| TCCCGAG... .......... .......... .......... .......... .......... 7 TTAGTTTGCA CTTTCCTTTA ATTGGATTAC ATTTTAATGT CATGCTAGAC GGGACCTCCA 59207 || |||||||||| .......... .......... .......... .......... ........AC GGGACCTCCA 19 CAATATCGTA GCAGAACTGT ATATGAGGAT GCCACTCCAG AAATGTTGAG GGATTTCTTC 59147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCGTA GCAGAACTGT ATATGAGGAT GCCACTCCAG AAATGTTGAG GGATTTCTTC 79 TGGGAAGATG AATTTCGATT GAAGTGGGAT GACATGCTTA TACATGCTGA AACATTAGAA 59087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAAGATG AATTTCGATT GAAGTGGGAT GACATGCTTA TACATGCTGA AACATTAGAA 139 GAGTGTCCTA CCACTGGAAC CATGGTGGTT CAGTGGGTGC GTAAGGTATT ATAGTGGTCT 59027 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGTGTCCTA CCACTGGAAC CATGGTGGTT CAGTGGGTGC GTAAG..... .......... 184 GTCTTCACTT GTGCATACTC TTGGATAGCC TAATTGAAGT ATGACTAACC AAAATCATTC 58967 .......... .......... .......... .......... .......... .......... 184 TGGTCCAGTT TCCCTTCTTT TGCAGTGATA GAGAGTACAT TATAGGCCGT CGAATTTGGG 58907 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TT TCCCTTCTTT TGCAGTGATA GAGAGTACAT TATAGGCCGT CGAATTTGGG 236 AGTCAGGGCG GACATACTAC TGCGTCACTA AGGTAAGAGA ATGAAGGCTT GTCATAAGTG 58847 |||||||||| |||||||||| |||||||||| || AGTCAGGGCG GACATACTAC TGCGTCACTA AG........ .......... .......... 268 CACAAGTAGT ATGTGCCAAT TGTGGATGTC AAACAAGCAT ACACTTTACT GTTAGAATCA 58787 .......... .......... .......... .......... .......... .......... 268 TCTTCTCTTT TTTTTTTGTT ATGGCAAACA ATGTTTTTCA ATATGGCATG CCATTTGTTA 58727 .......... .......... .......... .......... .......... .......... 268 TCTAACTCGA TATCTCTTAT ATGAGTGAAA GCCAGATAAT AAGAGATAGA AATTGATGAA 58667 .......... .......... .......... .......... .......... .......... 268 TAGCTTTTAA GTGTGTCATA CAGTTTCATA CTTTTAGACA TTGTAGGTTA GTTGTGAACC 58607 .......... .......... .......... .......... .......... .......... 268 TGATGAGCTA TTTTAAATTT TTCATTATCT GAGTAGAACT CAAAGAAGTG GAGTTAGTTG 58547 .......... .......... .......... .......... .......... .......... 268 TATCAAATCA GCTTAAGAGG GTCCTCCTCT TTCTGATGTG TTTCTTTTGC ACTTAGTATA 58487 .......... .......... .......... .......... .......... .......... 268 TTAGTTGTGA ACTGAAGAAC GATAAGCAAA GTTATGTTTT CTGTTATCTA AGTAAATACA 58427 .......... .......... .......... .......... .......... .......... 268 GAGAAATTGG TGTACAAGTA TGCAATTGAA ATTGAAGAGA GTGCAGTAAC TTCTTGCCAA 58367 .......... .......... .......... .......... .......... .......... 268 ACCATTTTCC TCCCCTGCTT TTGGCATCTT TTTTTTTTTG AGATTTTTGG GATAGACTAT 58307 .......... .......... .......... .......... .......... .......... 268 GCTGTGCATG TGTTAATCTG CACTCATTAA CGGTCAGAAA GGCAAAAATG GATTTGATGG 58247 .......... .......... .......... .......... .......... .......... 268 TGTGTTCCCT TCAAAGGTAG CAGTGAACAA GACTGCAGCG AGCAGTCTAA GGCTCCATTA 58187 .......... .......... .......... .......... .......... .......... 268 CCCTAGTAAC TTGTGGAGAT AAACGGATGA ACCTTCCCCC TCAATGAAAC TTTCTTCATC 58127 .......... .......... .......... .......... .......... .......... 268 CTTGTCACTT CCGATAGTTG TCCATGGGGG CTGTGTGAAA TACTTAAATA GGGATTCTAT 58067 .......... .......... .......... .......... .......... .......... 268 GGTGATGATG AGGAATCACT CATACCTTGT ACATATTGCA TACAAGACCT ATTCCTTCCT 58007 .......... .......... .......... .......... .......... .......... 268 ACCTTCGTGG TTATCATCAG GATCTAACAA ATAAATTGTT TATATGATAT ACCAATGTTT 57947 .......... .......... .......... .......... .......... .......... 268 ATCTCAATCA ACCATTTCAT ACTACTTATG GTGACCATCT GAGTCAAGCC TCCGCTCTTT 57887 .......... .......... .......... .......... .......... .......... 268 GATACTTACT GTCTTCAAAG TGAAGCCTCT CCTACTTACT ATTAGTTGAC TGGAGTTGGA 57827 .......... .......... .......... .......... .......... .......... 268 TATTTCCTGT CAGATTTGCA TTTGAATAGT TAAGATACTT CATAATTAGC ATTCAAAGGA 57767 .......... .......... .......... .......... .......... .......... 268 GGAATGTTTA TACCTGTAGG AGAGGGGAAG ACCCAAGATT AAATTGCAGG TATCCTAATA 57707 .......... .......... .......... .......... .......... .......... 268 GGAGATCCTA CCTCATGTTT TTCATTGTCT GGGTTGACTT GATATTGGTT GACACCTGAC 57647 .......... .......... .......... .......... .......... .......... 268 GGTGCTTCCT GTTTTATTTT TTTTAGCTGC CGTCACTCAC TTCATACTCT CCAATGTTAC 57587 .......... .......... .......... .......... .......... .......... 268 ATCATTTTGC TGAAATCTTG AATAATCTTG ATTTTTACAT GGTTCAGGGT GTACCATGCC 57527 ||| |||||||||| .......... .......... .......... .......... .......GGT GTACCATGCC 281 CTTCTGTGCC CCGTCGCAAC AAACCAAGAC GTGTTGATCT CTACTATTCA AGTTGGTTCA 57467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTGCC CCGTCGCAAC AAACCAAGAC GTGTTGATCT CTACTATTCA AGTTGGTTCA 341 TCCGCGCAGG TAATTTGAAG TGATATTGCT AGCTTGATTG CTATACTTCC AATAAAATTA 57407 ||||||||| TCCGCGCAG. .......... .......... .......... .......... .......... 350 TGGAATCTAC TGAACCAATT ATGATGATCA ACCATCAAAT GTAGTCTTAA GACTGAAACT 57347 .......... .......... .......... .......... .......... .......... 350 GGAGATGTTT CATTTGAATC ACTGAGAAGA GTTATTTTAT GACTATACAT CTGACTGCCT 57287 .......... .......... .......... .......... .......... .......... 350 TTTAATTCTT TTGCATGAAC AGCTGAATCC AAGAGAGATG GTCGGATGAC TGCCTGTGAA 57227 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CTGAATCC AAGAGAGATG GTCGGATGAC TGCCTGTGAA 388 GTATTACTCT TTCATTATGA AGACATGGGT ATACCTTGGG AAATTGCCAA ACTCGGGGTA 57167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTACTCT TTCATTATGA AGACATGGGT ATACCTTGGG AAATTGCCAA ACTCGGGGTA 448 AGGCAAGGTA TGTGGGGAGC TGTGAGGAAG ATTGACCCTG GTTTACGTGC ATACCAGAGA 57107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGGCAAGGTA TGTGGGGAGC TGTGAGGAAG ATTGACCCTG GTTTACGTGC ATACCATAGA 508 CATAGAGCGT CTGGAGACCC AATTTCACGA TGTGCTTTCA TGGCG 57062 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CATAGAGCGT CTGGAGACCC AATTTCACGA TGTGCTTTCA TGGCG 553 hqPGS_C08HBa0064M21.1-_SGN-E233406+ (59326 59320,59218 59042,58958 58875,57539 57458,57264 57062) ******************************************************************************** EST sequence 15 -strand 378 n (File: SGN-E223732-) 1 GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC AAAAGCGGTT 61 ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA CTGCTCTAGT 121 ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC TTTGGCAGCA 181 AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGTTA TATTATGTTG TCTTCTGTCA 241 AGCTGCAAGG CAGCCACTGT TCAGGAGAAT CCAGATTATA CTATACATGT ATTCGTTGAA 301 ATTCTGGTGT CACTGAATAT GTCATGCTTC AAATAAAAAG CAAAGCTGAT TCTTTTATGA 361 AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 57545 to 55805): Exon 1 56935 56576 ( 360 n); cDNA 1 360 ( 360 n); score: 1.000 Intron 1 56575 56309 ( 267 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 56308 56296 ( 13 n); cDNA 361 373 ( 13 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E223732- 1.000 373 0.987 C PGS_C08HBa0064M21.1-_SGN-E223732- (56935 56576,56308 56296) Alignment (genomic DNA sequence = upper lines): GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC AAAAGCGGTT 56876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC AAAAGCGGTT 60 ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA CTGCTCTAGT 56816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA CTGCTCTAGT 120 ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC TTTGGCAGCA 56756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC TTTGGCAGCA 180 AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGTTA TATTATGTTG TCTTCTGTCA 56696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGTTA TATTATGTTG TCTTCTGTCA 240 AGCTGCAAGG CAGCCACTGT TCAGGAGAAT CCAGATTATA CTATACATGT ATTCGTTGAA 56636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCAAGG CAGCCACTGT TCAGGAGAAT CCAGATTATA CTATACATGT ATTCGTTGAA 300 ATTCTGGTGT CACTGAATAT GTCATGCTTC AAATAAAAAG CAAAGCTGAT TCTTTTATGA 56576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTGGTGT CACTGAATAT GTCATGCTTC AAATAAAAAG CAAAGCTGAT TCTTTTATGA 360 ACTTTTTGTC CGTCTTTACT TTAATGAGTA ATTATTTTTC TTTAGTAGTT TGAGGAAGTT 56516 .......... .......... .......... .......... .......... .......... 360 GTTTTGTTTA TTTATTTATT TATGGAGTGA GCGTTCTGTG AAACAAGTTT ATCCTGAAAA 56456 .......... .......... .......... .......... .......... .......... 360 GAGTGGCTCA TAATTGGAAT GGCGACCGGC CTTTCTCACC AAATGTGTGG TGAGTTAGTT 56396 .......... .......... .......... .......... .......... .......... 360 GAGAATTGCT ACCTTTCAAA TTAAAATCCT AGAATTTGTT ATCTAATACC TAATAGAATT 56336 .......... .......... .......... .......... .......... .......... 360 ACCGGTATCA TAAAATAATT TTTTTTTAAA AAAAAAAAAA 56296 ||| |||||||||| .......... .......... .......AAA AAAAAAAAAA 373 hqPGS_C08HBa0064M21.1-_SGN-E223732- (56935 56576) ******************************************************************************** EST sequence 1 -strand 337 n (File: SGN-E215767-) 1 GGTTATATTT GGAGTTGCTA TAAGGTTTGC AGGGATTGGG AAAAGGTTGT GAAACTGCTC 61 TAGTATGGGT CCAGGCATTT TTATATACAT CATTTGATCG ATAAGAGAAC ATACTTTGGC 121 AACAAGGTAA CCCCTGTTAA AAACTAGGTC CCCCCCCAAA GTTATATTAT GGTGTCTTCT 181 GGCAAACTGC AAGGCAGCCC CTGTTCAGGA GAATCCAGAT TAAACTATAC ATGTATTCGT 241 TGAAATTCTG GTGTCACTGA ATATGTCATG CTTCCAATAA AAAGCAAAGC TGCCCCTTTT 301 TTGAAAAAGG AAAAAAAAAA AAATAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 57489 to 55538): Exon 1 56879 56588 ( 292 n); cDNA 1 292 ( 292 n); score: 0.942 PPA cDNA 311 337 MATCH C08HBa0064M21.1- SGN-E215767- 0.942 292 0.866 C PGS_C08HBa0064M21.1-_SGN-E215767- (56879 56588) Alignment (genomic DNA sequence = upper lines): GGTTATATTT GGAGTTGCTA GAAGGTTTGC AGGGATTGGG AAAAGGTTGT GAAACTGCTC 56820 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTTATATTT GGAGTTGCTA TAAGGTTTGC AGGGATTGGG AAAAGGTTGT GAAACTGCTC 60 TAGTATGGGT CGAGGCATTT TTATATACAT CATTTGATCG ATAAGAGAAC ATACTTTGGC 56760 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATGGGT CCAGGCATTT TTATATACAT CATTTGATCG ATAAGAGAAC ATACTTTGGC 120 AGCAAGGTAG CCACTGTGAA GAGCTAGGTC CTCCTCCATA GTTATATTAT GTTGTCTTCT 56700 | ||||||| || |||| || | ||||||| | || ||| | |||||||||| | |||||||| AACAAGGTAA CCCCTGTTAA AAACTAGGTC CCCCCCCAAA GTTATATTAT GGTGTCTTCT 180 GTCAAGCTGC AAGGCAGCCA CTGTTCAGGA GAATCCAGAT TATACTATAC ATGTATTCGT 56640 | ||| |||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGCAAACTGC AAGGCAGCCC CTGTTCAGGA GAATCCAGAT TAAACTATAC ATGTATTCGT 240 TGAAATTCTG GTGTCACTGA ATATGTCATG CTTCAAATAA AAAGCAAAGC TG 56588 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| || TGAAATTCTG GTGTCACTGA ATATGTCATG CTTCCAATAA AAAGCAAAGC TG 292 hqPGS_C08HBa0064M21.1-_SGN-E215767- (56879 56588) ******************************************************************************** EST sequence 104 +strand 496 n (File: SGN-E202669+) 1 CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG GACCTGCGTG 61 GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC GTAGAGATCC 121 CGAGACGGGA CCTCCACAAT ATCGTAGCAG AACTGTATAT GAGGATGCCA CTCCAGAAAT 181 GTTGAGGGAT TTCTTCTGGG AAGATGAATT TCGATTGAAG TGGGATGACA TGCTTATACA 241 TGCTGAAACA TTAGAAGAGT GTCCTACCAC TGGAACCATG GTGGTTCAGT GGGTGCGTAA 301 GTTTCCCTTC TTTTGCAGTG ATAGAGAGTA CATTATAGGC CGTCGAATTT GGGAGTCAGG 361 GCGGACATAC TACTGCGTCA CTAAGGGTGT ACCATGCCCT TCTGTGCCCC GTCGCAACAA 421 ACCAAGACGT GTTGATCTCT ACTATTCAAG TTGGTTCATC CGCGCAGCTG AATCCAAGAG 481 AGATGGTCGG ATGACT Predicted gene structure (within gDNA segment 60043 to 56626): Exon 1 59443 59320 ( 124 n); cDNA 1 124 ( 124 n); score: 1.000 Intron 1 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 2 59218 59042 ( 177 n); cDNA 125 301 ( 177 n); score: 1.000 Intron 2 59041 58959 ( 83 n); Pd: 0.869 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 3 58958 58875 ( 84 n); cDNA 302 385 ( 84 n); score: 1.000 Intron 3 58874 57540 (1335 n); Pd: 0.979 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 57539 57458 ( 82 n); cDNA 386 467 ( 82 n); score: 1.000 Intron 4 57457 57265 ( 193 n); Pd: 0.983 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 57264 57236 ( 29 n); cDNA 468 496 ( 29 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E202669+ 1.000 496 1.000 C PGS_C08HBa0064M21.1-_SGN-E202669+ (59443 59320,59218 59042,58958 58875,57539 57458,57264 57236) Alignment (genomic DNA sequence = upper lines): CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG GACCTGCGTG 59384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG GACCTGCGTG 60 GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC GTAGAGATCC 59324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC GTAGAGATCC 120 CGAGGTAGCT TTCTCTCCCC TGGCCTTATA GTATGTGTAA TGATAGGAGG GATTTAATTA 59264 |||| CGAG...... .......... .......... .......... .......... .......... 124 GTTTGCACTT TCCTTTAATT GGATTACATT TTAATGTCAT GCTAGACGGG ACCTCCACAA 59204 ||||| |||||||||| .......... .......... .......... .......... .....ACGGG ACCTCCACAA 139 TATCGTAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA TTTCTTCTGG 59144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGTAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA TTTCTTCTGG 199 GAAGATGAAT TTCGATTGAA GTGGGATGAC ATGCTTATAC ATGCTGAAAC ATTAGAAGAG 59084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATGAAT TTCGATTGAA GTGGGATGAC ATGCTTATAC ATGCTGAAAC ATTAGAAGAG 259 TGTCCTACCA CTGGAACCAT GGTGGTTCAG TGGGTGCGTA AGGTATTATA GTGGTCTGTC 59024 |||||||||| |||||||||| |||||||||| |||||||||| || TGTCCTACCA CTGGAACCAT GGTGGTTCAG TGGGTGCGTA AG........ .......... 301 TTCACTTGTG CATACTCTTG GATAGCCTAA TTGAAGTATG ACTAACCAAA ATCATTCTGG 58964 .......... .......... .......... .......... .......... .......... 301 TCCAGTTTCC CTTCTTTTGC AGTGATAGAG AGTACATTAT AGGCCGTCGA ATTTGGGAGT 58904 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TTTCC CTTCTTTTGC AGTGATAGAG AGTACATTAT AGGCCGTCGA ATTTGGGAGT 356 CAGGGCGGAC ATACTACTGC GTCACTAAGG TAAGAGAATG AAGGCTTGTC ATAAGTGCAC 58844 |||||||||| |||||||||| ||||||||| CAGGGCGGAC ATACTACTGC GTCACTAAG. .......... .......... .......... 385 AAGTAGTATG TGCCAATTGT GGATGTCAAA CAAGCATACA CTTTACTGTT AGAATCATCT 58784 .......... .......... .......... .......... .......... .......... 385 TCTCTTTTTT TTTTGTTATG GCAAACAATG TTTTTCAATA TGGCATGCCA TTTGTTATCT 58724 .......... .......... .......... .......... .......... .......... 385 AACTCGATAT CTCTTATATG AGTGAAAGCC AGATAATAAG AGATAGAAAT TGATGAATAG 58664 .......... .......... .......... .......... .......... .......... 385 CTTTTAAGTG TGTCATACAG TTTCATACTT TTAGACATTG TAGGTTAGTT GTGAACCTGA 58604 .......... .......... .......... .......... .......... .......... 385 TGAGCTATTT TAAATTTTTC ATTATCTGAG TAGAACTCAA AGAAGTGGAG TTAGTTGTAT 58544 .......... .......... .......... .......... .......... .......... 385 CAAATCAGCT TAAGAGGGTC CTCCTCTTTC TGATGTGTTT CTTTTGCACT TAGTATATTA 58484 .......... .......... .......... .......... .......... .......... 385 GTTGTGAACT GAAGAACGAT AAGCAAAGTT ATGTTTTCTG TTATCTAAGT AAATACAGAG 58424 .......... .......... .......... .......... .......... .......... 385 AAATTGGTGT ACAAGTATGC AATTGAAATT GAAGAGAGTG CAGTAACTTC TTGCCAAACC 58364 .......... .......... .......... .......... .......... .......... 385 ATTTTCCTCC CCTGCTTTTG GCATCTTTTT TTTTTTGAGA TTTTTGGGAT AGACTATGCT 58304 .......... .......... .......... .......... .......... .......... 385 GTGCATGTGT TAATCTGCAC TCATTAACGG TCAGAAAGGC AAAAATGGAT TTGATGGTGT 58244 .......... .......... .......... .......... .......... .......... 385 GTTCCCTTCA AAGGTAGCAG TGAACAAGAC TGCAGCGAGC AGTCTAAGGC TCCATTACCC 58184 .......... .......... .......... .......... .......... .......... 385 TAGTAACTTG TGGAGATAAA CGGATGAACC TTCCCCCTCA ATGAAACTTT CTTCATCCTT 58124 .......... .......... .......... .......... .......... .......... 385 GTCACTTCCG ATAGTTGTCC ATGGGGGCTG TGTGAAATAC TTAAATAGGG ATTCTATGGT 58064 .......... .......... .......... .......... .......... .......... 385 GATGATGAGG AATCACTCAT ACCTTGTACA TATTGCATAC AAGACCTATT CCTTCCTACC 58004 .......... .......... .......... .......... .......... .......... 385 TTCGTGGTTA TCATCAGGAT CTAACAAATA AATTGTTTAT ATGATATACC AATGTTTATC 57944 .......... .......... .......... .......... .......... .......... 385 TCAATCAACC ATTTCATACT ACTTATGGTG ACCATCTGAG TCAAGCCTCC GCTCTTTGAT 57884 .......... .......... .......... .......... .......... .......... 385 ACTTACTGTC TTCAAAGTGA AGCCTCTCCT ACTTACTATT AGTTGACTGG AGTTGGATAT 57824 .......... .......... .......... .......... .......... .......... 385 TTCCTGTCAG ATTTGCATTT GAATAGTTAA GATACTTCAT AATTAGCATT CAAAGGAGGA 57764 .......... .......... .......... .......... .......... .......... 385 ATGTTTATAC CTGTAGGAGA GGGGAAGACC CAAGATTAAA TTGCAGGTAT CCTAATAGGA 57704 .......... .......... .......... .......... .......... .......... 385 GATCCTACCT CATGTTTTTC ATTGTCTGGG TTGACTTGAT ATTGGTTGAC ACCTGACGGT 57644 .......... .......... .......... .......... .......... .......... 385 GCTTCCTGTT TTATTTTTTT TAGCTGCCGT CACTCACTTC ATACTCTCCA ATGTTACATC 57584 .......... .......... .......... .......... .......... .......... 385 ATTTTGCTGA AATCTTGAAT AATCTTGATT TTTACATGGT TCAGGGTGTA CCATGCCCTT 57524 |||||| |||||||||| .......... .......... .......... .......... ....GGTGTA CCATGCCCTT 401 CTGTGCCCCG TCGCAACAAA CCAAGACGTG TTGATCTCTA CTATTCAAGT TGGTTCATCC 57464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGCCCCG TCGCAACAAA CCAAGACGTG TTGATCTCTA CTATTCAAGT TGGTTCATCC 461 GCGCAGGTAA TTTGAAGTGA TATTGCTAGC TTGATTGCTA TACTTCCAAT AAAATTATGG 57404 |||||| GCGCAG.... .......... .......... .......... .......... .......... 467 AATCTACTGA ACCAATTATG ATGATCAACC ATCAAATGTA GTCTTAAGAC TGAAACTGGA 57344 .......... .......... .......... .......... .......... .......... 467 GATGTTTCAT TTGAATCACT GAGAAGAGTT ATTTTATGAC TATACATCTG ACTGCCTTTT 57284 .......... .......... .......... .......... .......... .......... 467 AATTCTTTTG CATGAACAGC TGAATCCAAG AGAGATGGTC GGATGACT 57236 | |||||||||| |||||||||| |||||||| .......... .........C TGAATCCAAG AGAGATGGTC GGATGACT 496 hqPGS_C08HBa0064M21.1-_SGN-E202669+ (59443 59320,59218 59042,58958 58875,57539 57458,57264 57236) ******************************************************************************** EST sequence 53 -strand 710 n (File: SGN-E393366-) 1 GGAGAGATGG TTGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA GACATGGGTA 61 TACCTTGGGA AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT GTGAGGAAGA 121 TTGACCCTGG TTTACGTGCA TACCAGAGAC ATAGAGCGTC TGGAGACCCA ATTTCACGAT 181 GTGCTTTCAT GGCGCAAGTC AACACCAAAG TTGATATTGA GAATCTCAGA TCAATGGGGA 241 GCGAAACCTA TCTTTCTGAG ATTGAGCGTG AGGATTCACC TGAGAAGCCT GCAGGGAGGA 301 TCATACCGCG GTTCTTAGTT GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG 361 GACTCCTGAC AAAAGCGGTT ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA 421 GGTTGTGAAA CTGCTCTAGT ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA 481 GAGAACATAC TTTGGCAGCA AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGTTA 541 TATTATGTTG TCTTCTGTCA AGCTGCAAGG CAGCCACTGT TCAGGAGAAT CCAGATTATA 601 CTATACATGT ATTCGTTGAA ATTCTGGTGT CACTGAATAT GTCATGCTTC AAATAAAAAG 661 CAAAGCTGAT TCTTTTATGA ACTTTTTGTC CGTCTTTAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 57973 to 55838): Exon 1 57254 56552 ( 703 n); cDNA 2 704 ( 703 n); score: 0.993 MATCH C08HBa0064M21.1- SGN-E393366- 0.993 703 0.990 C PGS_C08HBa0064M21.1-_SGN-E393366- (57254 56552) Alignment (genomic DNA sequence = upper lines): GAGAGATGGT CGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 57195 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGATGGT TGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 61 ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 57135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 121 TGACCCTGGT TTACGTGCAT ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 57075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCCTGGT TTACGTGCAT ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 181 TGCTTTCATG GCGCAAGTCA ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG 57015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTCATG GCGCAAGTCA ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG 241 CGAAACCTAT CTTTCTGAGA TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT 56955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAACCTAT CTTTCTGAGA TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT 301 CATACCGCGG TTCTTAGTTG TTGGTGGGGC AATTGCCCTT GCTTGTAGTC TTGATCGTGG 56895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCGCGG TTCTTAGTTG TTGGTGGGGC AATTGCCCTT GCTTGTAGTC TTGATCGTGG 361 ACTCCTGACA AAAGCGGTTA TATTTGGAGT TGCTAGAAGG TTTGCAGGGA TTGGGAAAAG 56835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCTGACA AAAGCGGTTA TATTTGGAGT TGCTAGAAGG TTTGCAGGGA TTGGGAAAAG 421 GTTGTGAAAC TGCTCTAGTA TGGGTCGAGG CATTTTTATA TACATCATTT GATCGATAAG 56775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGAAAC TGCTCTAGTA TGGGTCGAGG CATTTTTATA TACATCATTT GATCGATAAG 481 AGAACATACT TTGGCAGCAA GGTAGCCACT GTGAAGAGCT AGGTCCTCCT CCATAGTTAT 56715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACATACT TTGGCAGCAA GGTAGCCACT GTGAAGAGCT AGGTCCTCCT CCATAGTTAT 541 ATTATGTTGT CTTCTGTCAA GCTGCAAGGC AGCCACTGTT CAGGAGAATC CAGATTATAC 56655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGTTGT CTTCTGTCAA GCTGCAAGGC AGCCACTGTT CAGGAGAATC CAGATTATAC 601 TATACATGTA TTCGTTGAAA TTCTGGTGTC ACTGAATATG TCATGCTTCA AATAAAAAGC 56595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACATGTA TTCGTTGAAA TTCTGGTGTC ACTGAATATG TCATGCTTCA AATAAAAAGC 661 AAAGCTGATT CTTTTATGAA CTTTTTGTCC GTCTTTACTT TAA 56552 |||||||||| |||||||||| |||||||||| ||||||| || AAAGCTGATT CTTTTATGAA CTTTTTGTCC GTCTTTAAAA AAA 704 hqPGS_C08HBa0064M21.1-_SGN-E393366- (57254 56552) ******************************************************************************** EST sequence 24 -strand 393 n (File: SGN-E216855-) 1 GGTTCTTAGT TGTTGGTGGG GCAATTGCCC TTGCTTGTAG TCTTGATCGT GGACTCCTGA 61 CAAAAGCGGT TATATTTGGA GTTGCTAGAA GGTTTGCAGG GATTGGGAAA AGGTTGTGAA 121 ACTGCTCTAG TATGGGTCGA GGCATTTTTA TATACATCAT TTGATCGATA AGAGAACATA 181 CTTTGGCAGC AAGGTAGCCA CTGTGAAGAG CTAGGTCCTC CCCCATAGTT ATATTATGTT 241 GTCTTCTGTC AAGCTGCAAG GCAGCCCCTG TTCAGGAGAA TCCAGATTAT ACTATACATG 301 TATTCGTTGA AATTCTGGTG CCCCTGAATA TGTCATGCTC CCCCCAAAAA GCAAAGCTGA 361 TTCTTTTATG AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 57556 to 55765): Exon 1 56946 56575 ( 372 n); cDNA 1 372 ( 372 n); score: 0.976 PPA cDNA 373 393 MATCH C08HBa0064M21.1- SGN-E216855- 0.976 372 0.947 C PGS_C08HBa0064M21.1-_SGN-E216855- (56946 56575) Alignment (genomic DNA sequence = upper lines): GGTTCTTAGT TGTTGGTGGG GCAATTGCCC TTGCTTGTAG TCTTGATCGT GGACTCCTGA 56887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCTTAGT TGTTGGTGGG GCAATTGCCC TTGCTTGTAG TCTTGATCGT GGACTCCTGA 60 CAAAAGCGGT TATATTTGGA GTTGCTAGAA GGTTTGCAGG GATTGGGAAA AGGTTGTGAA 56827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGCGGT TATATTTGGA GTTGCTAGAA GGTTTGCAGG GATTGGGAAA AGGTTGTGAA 120 ACTGCTCTAG TATGGGTCGA GGCATTTTTA TATACATCAT TTGATCGATA AGAGAACATA 56767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCTCTAG TATGGGTCGA GGCATTTTTA TATACATCAT TTGATCGATA AGAGAACATA 180 CTTTGGCAGC AAGGTAGCCA CTGTGAAGAG CTAGGTCCTC CTCCATAGTT ATATTATGTT 56707 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CTTTGGCAGC AAGGTAGCCA CTGTGAAGAG CTAGGTCCTC CCCCATAGTT ATATTATGTT 240 GTCTTCTGTC AAGCTGCAAG GCAGCCACTG TTCAGGAGAA TCCAGATTAT ACTATACATG 56647 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GTCTTCTGTC AAGCTGCAAG GCAGCCCCTG TTCAGGAGAA TCCAGATTAT ACTATACATG 300 TATTCGTTGA AATTCTGGTG TCACTGAATA TGTCATGCTT CAAATAAAAA GCAAAGCTGA 56587 |||||||||| |||||||||| | ||||||| ||||||||| | ||||| |||||||||| TATTCGTTGA AATTCTGGTG CCCCTGAATA TGTCATGCTC CCCCCAAAAA GCAAAGCTGA 360 TTCTTTTATG AA 56575 |||||||||| || TTCTTTTATG AA 372 hqPGS_C08HBa0064M21.1-_SGN-E216855- (56946 56575) ******************************************************************************** EST sequence 16 -strand 385 n (File: SGN-E224135-) 1 CTTAGTTGTT GGTGGGGCAA TTCCCCTTGC TTGTAGTCTT GATCGTGGAC TCCTGACAAA 61 AGCGGTTATA TTTGGAGTTG CTAGAAGGTT TGCAGGGATT GGGAAAAGGT TGTGAAACTG 121 CTCTAGTATG GGTCGAGGCA TTTTTATATA CATCATTTGA TCGATAAGAG AACATACTTT 181 GGCAGCAAGG TAGCCCCTGT GAAGAGCTAG GTCCTCCTCC ATAGTTATAT TATGTTGTCT 241 TCTGTCAAGC TGCAAGGCAG CCACTGTTCA GGAGAATCCA GATTATACTA TACATGTATT 301 CGTTGAAATT CTGGTGCCAC TGAATATGTC ATGCTTCAAA TAAAAAGCAA AGCTGATTCT 361 TTTATGCCAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 57552 to 55787): Exon 1 56942 56580 ( 363 n); cDNA 1 363 ( 363 n); score: 0.992 PPA cDNA 369 385 MATCH C08HBa0064M21.1- SGN-E224135- 0.992 363 0.943 C PGS_C08HBa0064M21.1-_SGN-E224135- (56942 56580) Alignment (genomic DNA sequence = upper lines): CTTAGTTGTT GGTGGGGCAA TTGCCCTTGC TTGTAGTCTT GATCGTGGAC TCCTGACAAA 56883 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CTTAGTTGTT GGTGGGGCAA TTCCCCTTGC TTGTAGTCTT GATCGTGGAC TCCTGACAAA 60 AGCGGTTATA TTTGGAGTTG CTAGAAGGTT TGCAGGGATT GGGAAAAGGT TGTGAAACTG 56823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGGTTATA TTTGGAGTTG CTAGAAGGTT TGCAGGGATT GGGAAAAGGT TGTGAAACTG 120 CTCTAGTATG GGTCGAGGCA TTTTTATATA CATCATTTGA TCGATAAGAG AACATACTTT 56763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTAGTATG GGTCGAGGCA TTTTTATATA CATCATTTGA TCGATAAGAG AACATACTTT 180 GGCAGCAAGG TAGCCACTGT GAAGAGCTAG GTCCTCCTCC ATAGTTATAT TATGTTGTCT 56703 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGCAAGG TAGCCCCTGT GAAGAGCTAG GTCCTCCTCC ATAGTTATAT TATGTTGTCT 240 TCTGTCAAGC TGCAAGGCAG CCACTGTTCA GGAGAATCCA GATTATACTA TACATGTATT 56643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTCAAGC TGCAAGGCAG CCACTGTTCA GGAGAATCCA GATTATACTA TACATGTATT 300 CGTTGAAATT CTGGTGTCAC TGAATATGTC ATGCTTCAAA TAAAAAGCAA AGCTGATTCT 56583 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTGAAATT CTGGTGCCAC TGAATATGTC ATGCTTCAAA TAAAAAGCAA AGCTGATTCT 360 TTT 56580 ||| TTT 363 hqPGS_C08HBa0064M21.1-_SGN-E224135- (56942 56580) ******************************************************************************** EST sequence 107 +strand 536 n (File: SGN-E287246+) 1 TCGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA GACATGGGTA TACCTTGGGA 61 AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT GTGAGGAAGA TTGACCCTGG 121 TTTACGTGCA TACCAGAGAC ATAGAGCGTC TGGAGACCCA ATTTCACGAT GTGCTTTCAT 181 GGCGCAAGTC AACACCAAAG TTGATATTGA GAATCTCAGA TCAATGGGGA GCGAAACCTA 241 TCTTTCTGAG ATTGAGCGTG AGGATTCACC TGAGAAGCCT GCAGGGAGGA TCATACCGCG 301 GTTCTTAGTT GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC 361 AAAAGCGGTT ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA 421 CTGCTCTAGT ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC 481 TTTGGCAGCA AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGNTA TATTAT Predicted gene structure (within gDNA segment 57845 to 56019): Exon 1 57245 56710 ( 536 n); cDNA 1 536 ( 536 n); score: 0.998 MATCH C08HBa0064M21.1- SGN-E287246+ 0.998 536 1.000 C PGS_C08HBa0064M21.1-_SGN-E287246+ (57245 56710) Alignment (genomic DNA sequence = upper lines): TCGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA GACATGGGTA TACCTTGGGA 57186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGATGACT GCCTGTGAAG TATTACTCTT TCATTATGAA GACATGGGTA TACCTTGGGA 60 AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT GTGAGGAAGA TTGACCCTGG 57126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCCAAA CTCGGGGTAA GGCAAGGTAT GTGGGGAGCT GTGAGGAAGA TTGACCCTGG 120 TTTACGTGCA TACCAGAGAC ATAGAGCGTC TGGAGACCCA ATTTCACGAT GTGCTTTCAT 57066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACGTGCA TACCAGAGAC ATAGAGCGTC TGGAGACCCA ATTTCACGAT GTGCTTTCAT 180 GGCGCAAGTC AACACCAAAG TTGATATTGA GAATCTCAGA TCAATGGGGA GCGAAACCTA 57006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGCAAGTC AACACCAAAG TTGATATTGA GAATCTCAGA TCAATGGGGA GCGAAACCTA 240 TCTTTCTGAG ATTGAGCGTG AGGATTCACC TGAGAAGCCT GCAGGGAGGA TCATACCGCG 56946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCTGAG ATTGAGCGTG AGGATTCACC TGAGAAGCCT GCAGGGAGGA TCATACCGCG 300 GTTCTTAGTT GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC 56886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTAGTT GTTGGTGGGG CAATTGCCCT TGCTTGTAGT CTTGATCGTG GACTCCTGAC 360 AAAAGCGGTT ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA 56826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCGGTT ATATTTGGAG TTGCTAGAAG GTTTGCAGGG ATTGGGAAAA GGTTGTGAAA 420 CTGCTCTAGT ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC 56766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTCTAGT ATGGGTCGAG GCATTTTTAT ATACATCATT TGATCGATAA GAGAACATAC 480 TTTGGCAGCA AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGTTA TATTAT 56710 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||| TTTGGCAGCA AGGTAGCCAC TGTGAAGAGC TAGGTCCTCC TCCATAGNTA TATTAT 536 hqPGS_C08HBa0064M21.1-_SGN-E287246+ (57245 56710) ******************************************************************************** EST sequence 116 +strand 344 n (File: SGN-E393117+) 1 GAGAGATGGT CGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 61 ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 121 TGACCCTGGT TTACGTGCAT ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 181 TGCTTTCATG GCGCAAGTCA ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG 241 CGAAACCTAT CTTTCTGAGA TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT 301 CATACCGCGG TTCTTATTTG TTGGTGGGGC AATTGCCCTT GCTT Predicted gene structure (within gDNA segment 57854 to 56301): Exon 1 57254 56911 ( 344 n); cDNA 1 344 ( 344 n); score: 0.997 MATCH C08HBa0064M21.1- SGN-E393117+ 0.997 344 1.000 C PGS_C08HBa0064M21.1-_SGN-E393117+ (57254 56911) Alignment (genomic DNA sequence = upper lines): GAGAGATGGT CGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 57195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGATGGT CGGATGACTG CCTGTGAAGT ATTACTCTTT CATTATGAAG ACATGGGTAT 60 ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 57135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGGGAA ATTGCCAAAC TCGGGGTAAG GCAAGGTATG TGGGGAGCTG TGAGGAAGAT 120 TGACCCTGGT TTACGTGCAT ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 57075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCCTGGT TTACGTGCAT ACCAGAGACA TAGAGCGTCT GGAGACCCAA TTTCACGATG 180 TGCTTTCATG GCGCAAGTCA ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG 57015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTCATG GCGCAAGTCA ACACCAAAGT TGATATTGAG AATCTCAGAT CAATGGGGAG 240 CGAAACCTAT CTTTCTGAGA TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT 56955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAACCTAT CTTTCTGAGA TTGAGCGTGA GGATTCACCT GAGAAGCCTG CAGGGAGGAT 300 CATACCGCGG TTCTTAGTTG TTGGTGGGGC AATTGCCCTT GCTT 56911 |||||||||| |||||| ||| |||||||||| |||||||||| |||| CATACCGCGG TTCTTATTTG TTGGTGGGGC AATTGCCCTT GCTT 344 hqPGS_C08HBa0064M21.1-_SGN-E393117+ (57254 56911) ******************************************************************************** EST sequence 111 +strand 554 n (File: SGN-E275964+) 1 AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT GTTTATGGCA CCCATCTGGA 61 TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA GCCCAATTGG GCCAATCTTG 121 CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA AAACTTGTCT TCTGGCTTTT 181 CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCATTT 241 CATCCTCTAC CTCCAGTTCA TTGCATCTGG AAGCCGAAAA ATTGGTAGTA ACCGATGCAG 301 ACCTTCGTTA CTTAGATGGA TTAGTTGAAG AGAAAGATGG AGGACCTGCG TGGATTCAGA 361 TGATGGATCG TTCTACACCA AATATGTCCT ATCAGGCTTG GCGTAGAGAT CCCTAGACGG 421 GACCTCCACA ATATCGTAGC AGAACTGTAT ATGAGGATGC CACTCCAGAA ATGTTGAGGG 481 ATTTCTTCTG GGAAGATGAA TTTCGATTGA AGTGGGATGA CATGCTTATA CATGCTGAAA 541 CATTAGAAGA GTGT Predicted gene structure (within gDNA segment 61969 to 58471): Exon 1 61369 61114 ( 256 n); cDNA 1 256 ( 256 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 257 416 ( 160 n); score: 0.994 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 0.98), Pa: 0.987 (s: 1.00) Exon 3 59218 59081 ( 138 n); cDNA 417 554 ( 138 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E275964+ 0.998 554 1.000 C PGS_C08HBa0064M21.1-_SGN-E275964+ (61369 61114,59479 59320,59218 59081) Alignment (genomic DNA sequence = upper lines): AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT GTTTATGGCA CCCATCTGGA 61310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT GTTTATGGCA CCCATCTGGA 60 TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA GCCCAATTGG GCCAATCTTG 61250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA GCCCAATTGG GCCAATCTTG 120 CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA AAACTTGTCT TCTGGCTTTT 61190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA AAACTTGTCT TCTGGCTTTT 180 CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCATTT 61130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCATTT 240 CATCCTCTAC CTCCAGGTTT CTTCCAAAGT CTCTCTCTTT AATTTCTCAT TTTCTGTATT 61070 |||||||||| |||||| CATCCTCTAC CTCCAG.... .......... .......... .......... .......... 256 TCTCCTTTAC ATACCCGATT TCTAAAACTA ACTTTTAAAA ATGCGATCCC AGTTGACTGA 61010 .......... .......... .......... .......... .......... .......... 256 TGGATTAAAA ATTTGGCTAA CTTTATTAAA GAAAATGAAT TGTGTTGGTT TTAAAAATCT 60950 .......... .......... .......... .......... .......... .......... 256 TTAGAAAAAT GAATAGATAT TAATTTGTAC TATCAAGTAA TGAAAAATTA AAAGTTCAAG 60890 .......... .......... .......... .......... .......... .......... 256 CGTCTGGAAA TGTTTTTAAC TTAATAATAA TCTATATCCA AGTTAAAGAT TTGAACCAAA 60830 .......... .......... .......... .......... .......... .......... 256 TGGTTAGCTC AAATTCATTA ACGTGAATTA AAGCTTTTTA ATAACTATGA AACAGCTGGT 60770 .......... .......... .......... .......... .......... .......... 256 TCTTAAGTTA TTCTACAAGC TTAAGTCTGC CTTAACTAAA TTGGGCTTTG AAAATTGAAA 60710 .......... .......... .......... .......... .......... .......... 256 TACTTGTCAC AAAATAGTGA AAGAAAGGTC ATTAAAAAAT CTCCCGGGAA ATCATCTAAG 60650 .......... .......... .......... .......... .......... .......... 256 TTAGATAATA AGTTGAGTAA TCACAGTAAA CAATGAGTTC CTCTGGGACT GCCGCTACCT 60590 .......... .......... .......... .......... .......... .......... 256 GTTTCAGCTG CTGCTGGTTT TTGAGTTTTA ACCCAATAGT ATTTGCTTCC CTTTAGCGAC 60530 .......... .......... .......... .......... .......... .......... 256 TTGGTGGAGG TTGACTCGAA GAGAGGAATA TGCAAGAGTC CAATGGACTC AAATGGAAGA 60470 .......... .......... .......... .......... .......... .......... 256 GTGCATGCAA AGAAAACAAA GAAAAAGAAT TAATAACTAA TAAAGAAGGG GCTGATACTA 60410 .......... .......... .......... .......... .......... .......... 256 ATTTAACATG TAAACAAACT CAATCAACAT TTGATGATGC AAATTAAGTC TGCCAGCGTA 60350 .......... .......... .......... .......... .......... .......... 256 AAGAGGAAAA AAAGGAAACA AGGAGTACAA CTTCCAATCC TAACACATAA TAGAAGTCAA 60290 .......... .......... .......... .......... .......... .......... 256 CATAATCGCA ATTTTAGTCA GCAAATAAGT GTGGAAGGCA TAGTTAAAAG CATTCTTGCA 60230 .......... .......... .......... .......... .......... .......... 256 CCAACTTTAA CCAACAAGAG CTATATCATG TAGGGGTCTG TTGGTTGGAA GCTTCTAGGC 60170 .......... .......... .......... .......... .......... .......... 256 GTCCTCGAGT CGTGCTAAGC ACGCGGAGTG TACGAATTGA AGGAAAAAAG AGGAAATTGA 60110 .......... .......... .......... .......... .......... .......... 256 GGCGGCAAAA TGAGGATTTA GGGCTGGGTC CATCTGGTTG AGCATTGTTG GCGTTGTGCT 60050 .......... .......... .......... .......... .......... .......... 256 TGTTGTGAGC GAGAAGAAAG AGTGAGGGGT CTGGGTTGAA TTGGAGTTGG GCCGGGTGTT 59990 .......... .......... .......... .......... .......... .......... 256 TCATAATGGG CCAAATGTAT GGTCTTAAAA GGAAGAAAGA AAGGAACAGG TTGTTTGGTT 59930 .......... .......... .......... .......... .......... .......... 256 TCTATATTTT ATCAAATTAA ACCGAATTTG ATAAAACGGG AAGGAGATAA ATCATAAATT 59870 .......... .......... .......... .......... .......... .......... 256 TAACTAATTA TTAAGCTTCT TAACTTCAAC AAGATAAAAG TAATTATTTT GAAATAAAAG 59810 .......... .......... .......... .......... .......... .......... 256 ATCAACTATA CCAATCAAAT CACAAATTAT TTTAGGGAAA TAAAACACAG ACTAAAACAC 59750 .......... .......... .......... .......... .......... .......... 256 AATTTTTGGT AAAACAAATT TTCCTAATCT TTATTAAAAG TAGCAAGTAT ATGAATCTAA 59690 .......... .......... .......... .......... .......... .......... 256 TATATATTGA GATGTATTTT ATAGGGAAAT GGCAAAATGG CCTTGAAAAT GATTTCAAAA 59630 .......... .......... .......... .......... .......... .......... 256 GTATTTTTTT ATTTTCGAAA ACAATTATTT CAAATTGTTT GAAATTGAAG AAGCTTGAAA 59570 .......... .......... .......... .......... .......... .......... 256 ATTAATTAAA TTGTGGAGGA TCAGAATTGA GTCTCAACAG TAGATACACA AATCCTTGAC 59510 .......... .......... .......... .......... .......... .......... 256 CCCAATAATT ATTTAATCTG CTGTTATCAG TTCATTGCAT CTGGAAGCCG AAAAATTGGT 59450 |||||||||| |||||||||| |||||||||| .......... .......... .......... TTCATTGCAT CTGGAAGCCG AAAAATTGGT 286 AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT GAAGAGAAAG ATGGAGGACC 59390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT GAAGAGAAAG ATGGAGGACC 346 TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG TCCTATCAGG CTTGGCGTAG 59330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG TCCTATCAGG CTTGGCGTAG 406 AGATCCCGAG GTAGCTTTCT CTCCCCTGGC CTTATAGTAT GTGTAATGAT AGGAGGGATT 59270 ||||||| || AGATCCCTAG .......... .......... .......... .......... .......... 416 TAATTAGTTT GCACTTTCCT TTAATTGGAT TACATTTTAA TGTCATGCTA GACGGGACCT 59210 ||||||||| .......... .......... .......... .......... .......... .ACGGGACCT 425 CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC CAGAAATGTT GAGGGATTTC 59150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC CAGAAATGTT GAGGGATTTC 485 TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC TTATACATGC TGAAACATTA 59090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC TTATACATGC TGAAACATTA 545 GAAGAGTGT 59081 ||||||||| GAAGAGTGT 554 hqPGS_C08HBa0064M21.1-_SGN-E275964+ (61369 61114,59479 59320,59218 59081) ******************************************************************************** EST sequence 117 +strand 552 n (File: SGN-E276838+) 1 TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 61 TGGATTGCTG TTCTTGCTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 121 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GACTTCTGGC 181 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 241 ATTTGATCCT CTACCTCCAG TTCATTGCAT CTGGAAGCCG AAAAATTGGT AGTAACCGAT 301 GCAGACCTTC GTTACTTAGA TGGATTAGTT GATGAGAAAG ATGGAGGACC TGCGTGGATT 361 CAGATGATGG ATCGTCCTAC ACCAAATATG TCCTATCAGG CTAGGCGTAT AGATCCCGAG 421 ACGGGACCTC CACAATATCG GAGCAGAACT GTATATGAGG ATGCCACTCC AGAAATGTTG 481 AGGGATTTCT TCTGGGAAGA TGAATTTCCA TTGAAGTGGG ATGACATGCT TATACATGCT 541 GAAACATTAG AA Predicted gene structure (within gDNA segment 61973 to 58477): Exon 1 61373 61114 ( 260 n); cDNA 1 260 ( 260 n); score: 0.988 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 0.98), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 261 420 ( 160 n); score: 0.975 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 0.94), Pa: 0.987 (s: 0.98) Exon 3 59218 59087 ( 132 n); cDNA 421 552 ( 132 n); score: 0.985 MATCH C08HBa0064M21.1- SGN-E276838+ 0.984 552 1.000 C PGS_C08HBa0064M21.1-_SGN-E276838+ (61373 61114,59479 59320,59218 59087) Alignment (genomic DNA sequence = upper lines): TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 61314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 60 TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 61254 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTGCTG TTCTTGCTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 120 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GTCTTCTGGC 61194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GACTTCTGGC 180 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 61134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 240 ATTTCATCCT CTACCTCCAG GTTTCTTCCA AAGTCTCTCT CTTTAATTTC TCATTTTCTG 61074 |||| ||||| |||||||||| ATTTGATCCT CTACCTCCAG .......... .......... .......... .......... 260 TATTTCTCCT TTACATACCC GATTTCTAAA ACTAACTTTT AAAAATGCGA TCCCAGTTGA 61014 .......... .......... .......... .......... .......... .......... 260 CTGATGGATT AAAAATTTGG CTAACTTTAT TAAAGAAAAT GAATTGTGTT GGTTTTAAAA 60954 .......... .......... .......... .......... .......... .......... 260 ATCTTTAGAA AAATGAATAG ATATTAATTT GTACTATCAA GTAATGAAAA ATTAAAAGTT 60894 .......... .......... .......... .......... .......... .......... 260 CAAGCGTCTG GAAATGTTTT TAACTTAATA ATAATCTATA TCCAAGTTAA AGATTTGAAC 60834 .......... .......... .......... .......... .......... .......... 260 CAAATGGTTA GCTCAAATTC ATTAACGTGA ATTAAAGCTT TTTAATAACT ATGAAACAGC 60774 .......... .......... .......... .......... .......... .......... 260 TGGTTCTTAA GTTATTCTAC AAGCTTAAGT CTGCCTTAAC TAAATTGGGC TTTGAAAATT 60714 .......... .......... .......... .......... .......... .......... 260 GAAATACTTG TCACAAAATA GTGAAAGAAA GGTCATTAAA AAATCTCCCG GGAAATCATC 60654 .......... .......... .......... .......... .......... .......... 260 TAAGTTAGAT AATAAGTTGA GTAATCACAG TAAACAATGA GTTCCTCTGG GACTGCCGCT 60594 .......... .......... .......... .......... .......... .......... 260 ACCTGTTTCA GCTGCTGCTG GTTTTTGAGT TTTAACCCAA TAGTATTTGC TTCCCTTTAG 60534 .......... .......... .......... .......... .......... .......... 260 CGACTTGGTG GAGGTTGACT CGAAGAGAGG AATATGCAAG AGTCCAATGG ACTCAAATGG 60474 .......... .......... .......... .......... .......... .......... 260 AAGAGTGCAT GCAAAGAAAA CAAAGAAAAA GAATTAATAA CTAATAAAGA AGGGGCTGAT 60414 .......... .......... .......... .......... .......... .......... 260 ACTAATTTAA CATGTAAACA AACTCAATCA ACATTTGATG ATGCAAATTA AGTCTGCCAG 60354 .......... .......... .......... .......... .......... .......... 260 CGTAAAGAGG AAAAAAAGGA AACAAGGAGT ACAACTTCCA ATCCTAACAC ATAATAGAAG 60294 .......... .......... .......... .......... .......... .......... 260 TCAACATAAT CGCAATTTTA GTCAGCAAAT AAGTGTGGAA GGCATAGTTA AAAGCATTCT 60234 .......... .......... .......... .......... .......... .......... 260 TGCACCAACT TTAACCAACA AGAGCTATAT CATGTAGGGG TCTGTTGGTT GGAAGCTTCT 60174 .......... .......... .......... .......... .......... .......... 260 AGGCGTCCTC GAGTCGTGCT AAGCACGCGG AGTGTACGAA TTGAAGGAAA AAAGAGGAAA 60114 .......... .......... .......... .......... .......... .......... 260 TTGAGGCGGC AAAATGAGGA TTTAGGGCTG GGTCCATCTG GTTGAGCATT GTTGGCGTTG 60054 .......... .......... .......... .......... .......... .......... 260 TGCTTGTTGT GAGCGAGAAG AAAGAGTGAG GGGTCTGGGT TGAATTGGAG TTGGGCCGGG 59994 .......... .......... .......... .......... .......... .......... 260 TGTTTCATAA TGGGCCAAAT GTATGGTCTT AAAAGGAAGA AAGAAAGGAA CAGGTTGTTT 59934 .......... .......... .......... .......... .......... .......... 260 GGTTTCTATA TTTTATCAAA TTAAACCGAA TTTGATAAAA CGGGAAGGAG ATAAATCATA 59874 .......... .......... .......... .......... .......... .......... 260 AATTTAACTA ATTATTAAGC TTCTTAACTT CAACAAGATA AAAGTAATTA TTTTGAAATA 59814 .......... .......... .......... .......... .......... .......... 260 AAAGATCAAC TATACCAATC AAATCACAAA TTATTTTAGG GAAATAAAAC ACAGACTAAA 59754 .......... .......... .......... .......... .......... .......... 260 ACACAATTTT TGGTAAAACA AATTTTCCTA ATCTTTATTA AAAGTAGCAA GTATATGAAT 59694 .......... .......... .......... .......... .......... .......... 260 CTAATATATA TTGAGATGTA TTTTATAGGG AAATGGCAAA ATGGCCTTGA AAATGATTTC 59634 .......... .......... .......... .......... .......... .......... 260 AAAAGTATTT TTTTATTTTC GAAAACAATT ATTTCAAATT GTTTGAAATT GAAGAAGCTT 59574 .......... .......... .......... .......... .......... .......... 260 GAAAATTAAT TAAATTGTGG AGGATCAGAA TTGAGTCTCA ACAGTAGATA CACAAATCCT 59514 .......... .......... .......... .......... .......... .......... 260 TGACCCCAAT AATTATTTAA TCTGCTGTTA TCAGTTCATT GCATCTGGAA GCCGAAAAAT 59454 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTCATT GCATCTGGAA GCCGAAAAAT 286 TGGTAGTAAC CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG 59394 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TGGTAGTAAC CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGATGAG AAAGATGGAG 346 GACCTGCGTG GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC 59334 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| GACCTGCGTG GATTCAGATG ATGGATCGTC CTACACCAAA TATGTCCTAT CAGGCTAGGC 406 GTAGAGATCC CGAGGTAGCT TTCTCTCCCC TGGCCTTATA GTATGTGTAA TGATAGGAGG 59274 ||| |||||| |||| GTATAGATCC CGAG...... .......... .......... .......... .......... 420 GATTTAATTA GTTTGCACTT TCCTTTAATT GGATTACATT TTAATGTCAT GCTAGACGGG 59214 ||||| .......... .......... .......... .......... .......... .....ACGGG 425 ACCTCCACAA TATCGTAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA 59154 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCCACAA TATCGGAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA 485 TTTCTTCTGG GAAGATGAAT TTCGATTGAA GTGGGATGAC ATGCTTATAC ATGCTGAAAC 59094 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTTCTTCTGG GAAGATGAAT TTCCATTGAA GTGGGATGAC ATGCTTATAC ATGCTGAAAC 545 ATTAGAA 59087 ||||||| ATTAGAA 552 hqPGS_C08HBa0064M21.1-_SGN-E276838+ (61373 61114,59479 59320,59218 59087) ******************************************************************************** EST sequence 108 +strand 563 n (File: SGN-E299372+) 1 GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 61 GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 121 GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 181 AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 241 TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAGTTCA TTGCATCTGG AAGCCGAAAA 301 ATTGGTAGTA ACCGATGCAG ACCTTCGTTA CTTAGATGGA TTAGTTGAAG AGAAAGATGG 361 AGGACCTGCG TGGATTCAGA TGATGGATCG TTCTACACCA AATATGTCCT ATCAGGCTTG 421 GCGTAGAGAT CCCGAGACGG GACCTCCACA ATATCGTAGC AGAACTGTAT ATGAGGATGC 481 CACTCCAGAA ATGTTGAGGG ATTTCTTCTG GGAAGATGAA TTTCGATTGA AGTGGGATGA 541 CATGCTTATA CATGCTGAAA CAT Predicted gene structure (within gDNA segment 61989 to 58482): Exon 1 61389 61114 ( 276 n); cDNA 1 276 ( 276 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 277 436 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 59218 59092 ( 127 n); cDNA 437 563 ( 127 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E299372+ 1.000 563 1.000 C PGS_C08HBa0064M21.1-_SGN-E299372+ (61389 61114,59479 59320,59218 59092) Alignment (genomic DNA sequence = upper lines): GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 61330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 60 GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 61270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 120 GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 61210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 180 AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 61150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 240 TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAGGTTT CTTCCAAAGT CTCTCTCTTT 61090 |||||||||| |||||||||| |||||||||| |||||| TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAG.... .......... .......... 276 AATTTCTCAT TTTCTGTATT TCTCCTTTAC ATACCCGATT TCTAAAACTA ACTTTTAAAA 61030 .......... .......... .......... .......... .......... .......... 276 ATGCGATCCC AGTTGACTGA TGGATTAAAA ATTTGGCTAA CTTTATTAAA GAAAATGAAT 60970 .......... .......... .......... .......... .......... .......... 276 TGTGTTGGTT TTAAAAATCT TTAGAAAAAT GAATAGATAT TAATTTGTAC TATCAAGTAA 60910 .......... .......... .......... .......... .......... .......... 276 TGAAAAATTA AAAGTTCAAG CGTCTGGAAA TGTTTTTAAC TTAATAATAA TCTATATCCA 60850 .......... .......... .......... .......... .......... .......... 276 AGTTAAAGAT TTGAACCAAA TGGTTAGCTC AAATTCATTA ACGTGAATTA AAGCTTTTTA 60790 .......... .......... .......... .......... .......... .......... 276 ATAACTATGA AACAGCTGGT TCTTAAGTTA TTCTACAAGC TTAAGTCTGC CTTAACTAAA 60730 .......... .......... .......... .......... .......... .......... 276 TTGGGCTTTG AAAATTGAAA TACTTGTCAC AAAATAGTGA AAGAAAGGTC ATTAAAAAAT 60670 .......... .......... .......... .......... .......... .......... 276 CTCCCGGGAA ATCATCTAAG TTAGATAATA AGTTGAGTAA TCACAGTAAA CAATGAGTTC 60610 .......... .......... .......... .......... .......... .......... 276 CTCTGGGACT GCCGCTACCT GTTTCAGCTG CTGCTGGTTT TTGAGTTTTA ACCCAATAGT 60550 .......... .......... .......... .......... .......... .......... 276 ATTTGCTTCC CTTTAGCGAC TTGGTGGAGG TTGACTCGAA GAGAGGAATA TGCAAGAGTC 60490 .......... .......... .......... .......... .......... .......... 276 CAATGGACTC AAATGGAAGA GTGCATGCAA AGAAAACAAA GAAAAAGAAT TAATAACTAA 60430 .......... .......... .......... .......... .......... .......... 276 TAAAGAAGGG GCTGATACTA ATTTAACATG TAAACAAACT CAATCAACAT TTGATGATGC 60370 .......... .......... .......... .......... .......... .......... 276 AAATTAAGTC TGCCAGCGTA AAGAGGAAAA AAAGGAAACA AGGAGTACAA CTTCCAATCC 60310 .......... .......... .......... .......... .......... .......... 276 TAACACATAA TAGAAGTCAA CATAATCGCA ATTTTAGTCA GCAAATAAGT GTGGAAGGCA 60250 .......... .......... .......... .......... .......... .......... 276 TAGTTAAAAG CATTCTTGCA CCAACTTTAA CCAACAAGAG CTATATCATG TAGGGGTCTG 60190 .......... .......... .......... .......... .......... .......... 276 TTGGTTGGAA GCTTCTAGGC GTCCTCGAGT CGTGCTAAGC ACGCGGAGTG TACGAATTGA 60130 .......... .......... .......... .......... .......... .......... 276 AGGAAAAAAG AGGAAATTGA GGCGGCAAAA TGAGGATTTA GGGCTGGGTC CATCTGGTTG 60070 .......... .......... .......... .......... .......... .......... 276 AGCATTGTTG GCGTTGTGCT TGTTGTGAGC GAGAAGAAAG AGTGAGGGGT CTGGGTTGAA 60010 .......... .......... .......... .......... .......... .......... 276 TTGGAGTTGG GCCGGGTGTT TCATAATGGG CCAAATGTAT GGTCTTAAAA GGAAGAAAGA 59950 .......... .......... .......... .......... .......... .......... 276 AAGGAACAGG TTGTTTGGTT TCTATATTTT ATCAAATTAA ACCGAATTTG ATAAAACGGG 59890 .......... .......... .......... .......... .......... .......... 276 AAGGAGATAA ATCATAAATT TAACTAATTA TTAAGCTTCT TAACTTCAAC AAGATAAAAG 59830 .......... .......... .......... .......... .......... .......... 276 TAATTATTTT GAAATAAAAG ATCAACTATA CCAATCAAAT CACAAATTAT TTTAGGGAAA 59770 .......... .......... .......... .......... .......... .......... 276 TAAAACACAG ACTAAAACAC AATTTTTGGT AAAACAAATT TTCCTAATCT TTATTAAAAG 59710 .......... .......... .......... .......... .......... .......... 276 TAGCAAGTAT ATGAATCTAA TATATATTGA GATGTATTTT ATAGGGAAAT GGCAAAATGG 59650 .......... .......... .......... .......... .......... .......... 276 CCTTGAAAAT GATTTCAAAA GTATTTTTTT ATTTTCGAAA ACAATTATTT CAAATTGTTT 59590 .......... .......... .......... .......... .......... .......... 276 GAAATTGAAG AAGCTTGAAA ATTAATTAAA TTGTGGAGGA TCAGAATTGA GTCTCAACAG 59530 .......... .......... .......... .......... .......... .......... 276 TAGATACACA AATCCTTGAC CCCAATAATT ATTTAATCTG CTGTTATCAG TTCATTGCAT 59470 |||||||||| .......... .......... .......... .......... .......... TTCATTGCAT 286 CTGGAAGCCG AAAAATTGGT AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT 59410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAAGCCG AAAAATTGGT AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT 346 GAAGAGAAAG ATGGAGGACC TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG 59350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAAAG ATGGAGGACC TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG 406 TCCTATCAGG CTTGGCGTAG AGATCCCGAG GTAGCTTTCT CTCCCCTGGC CTTATAGTAT 59290 |||||||||| |||||||||| |||||||||| TCCTATCAGG CTTGGCGTAG AGATCCCGAG .......... .......... .......... 436 GTGTAATGAT AGGAGGGATT TAATTAGTTT GCACTTTCCT TTAATTGGAT TACATTTTAA 59230 .......... .......... .......... .......... .......... .......... 436 TGTCATGCTA GACGGGACCT CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC 59170 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .ACGGGACCT CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC 485 CAGAAATGTT GAGGGATTTC TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC 59110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATGTT GAGGGATTTC TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC 545 TTATACATGC TGAAACAT 59092 |||||||||| |||||||| TTATACATGC TGAAACAT 563 hqPGS_C08HBa0064M21.1-_SGN-E299372+ (61389 61114,59479 59320,59218 59092) ******************************************************************************** EST sequence 120 +strand 561 n (File: SGN-E276622+) 1 GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 61 GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 121 GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 181 AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 241 TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAGTTCA TTGCATCTGG AAGCCGAAAA 301 ATTGGTAGTA ACCGATGCAG ACCTTCGTTA CTTAGATGGA TTAGTTGAAG AGAAAGATGG 361 AGGACCTGCG TGGATTCAGA TGATGGATCG TTCTACACCA AATATGTCCT ATCAGGCTTG 421 GCGTAGAGAT CCCGAGACGG GACCTCCACA ATATCGTAGC AGAACTGTAT ATGAGGATGC 481 CACTCCAGAA ATGTTGAGGG ATTTCTTCTG GGAAGATGAA TTTCGATTGA AGTGGGATGA 541 CATGCTTATA CATGCTGAAA C Predicted gene structure (within gDNA segment 61989 to 58484): Exon 1 61389 61114 ( 276 n); cDNA 1 276 ( 276 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 277 436 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 59218 59094 ( 125 n); cDNA 437 561 ( 125 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E276622+ 1.000 561 1.000 C PGS_C08HBa0064M21.1-_SGN-E276622+ (61389 61114,59479 59320,59218 59094) Alignment (genomic DNA sequence = upper lines): GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 61330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGCTT GAGATTTTAC AAAGACCAAC TTTTGGGGAG GTAATATTAG AGCTGGGGAT 60 GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 61270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATGGCA CCCATCTGGA TTGCTGTTCT TGTTGGGGTC TTGGTTGGAT GGTCATGGAA 120 GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 61210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAATTGG GCCAATCTTG CCATTGATTC TGTTCCTACA ACACATGTTC CTTCTCTCCA 180 AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 61150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTGTCT TCTGGCTTTT CAACTCTCAA ATTGCAAATT CCCTCTTGGA TCAAGGAAAC 240 TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAGGTTT CTTCCAAAGT CTCTCTCTTT 61090 |||||||||| |||||||||| |||||||||| |||||| TCACTCCCCA CCCTCCATTT CATCCTCTAC CTCCAG.... .......... .......... 276 AATTTCTCAT TTTCTGTATT TCTCCTTTAC ATACCCGATT TCTAAAACTA ACTTTTAAAA 61030 .......... .......... .......... .......... .......... .......... 276 ATGCGATCCC AGTTGACTGA TGGATTAAAA ATTTGGCTAA CTTTATTAAA GAAAATGAAT 60970 .......... .......... .......... .......... .......... .......... 276 TGTGTTGGTT TTAAAAATCT TTAGAAAAAT GAATAGATAT TAATTTGTAC TATCAAGTAA 60910 .......... .......... .......... .......... .......... .......... 276 TGAAAAATTA AAAGTTCAAG CGTCTGGAAA TGTTTTTAAC TTAATAATAA TCTATATCCA 60850 .......... .......... .......... .......... .......... .......... 276 AGTTAAAGAT TTGAACCAAA TGGTTAGCTC AAATTCATTA ACGTGAATTA AAGCTTTTTA 60790 .......... .......... .......... .......... .......... .......... 276 ATAACTATGA AACAGCTGGT TCTTAAGTTA TTCTACAAGC TTAAGTCTGC CTTAACTAAA 60730 .......... .......... .......... .......... .......... .......... 276 TTGGGCTTTG AAAATTGAAA TACTTGTCAC AAAATAGTGA AAGAAAGGTC ATTAAAAAAT 60670 .......... .......... .......... .......... .......... .......... 276 CTCCCGGGAA ATCATCTAAG TTAGATAATA AGTTGAGTAA TCACAGTAAA CAATGAGTTC 60610 .......... .......... .......... .......... .......... .......... 276 CTCTGGGACT GCCGCTACCT GTTTCAGCTG CTGCTGGTTT TTGAGTTTTA ACCCAATAGT 60550 .......... .......... .......... .......... .......... .......... 276 ATTTGCTTCC CTTTAGCGAC TTGGTGGAGG TTGACTCGAA GAGAGGAATA TGCAAGAGTC 60490 .......... .......... .......... .......... .......... .......... 276 CAATGGACTC AAATGGAAGA GTGCATGCAA AGAAAACAAA GAAAAAGAAT TAATAACTAA 60430 .......... .......... .......... .......... .......... .......... 276 TAAAGAAGGG GCTGATACTA ATTTAACATG TAAACAAACT CAATCAACAT TTGATGATGC 60370 .......... .......... .......... .......... .......... .......... 276 AAATTAAGTC TGCCAGCGTA AAGAGGAAAA AAAGGAAACA AGGAGTACAA CTTCCAATCC 60310 .......... .......... .......... .......... .......... .......... 276 TAACACATAA TAGAAGTCAA CATAATCGCA ATTTTAGTCA GCAAATAAGT GTGGAAGGCA 60250 .......... .......... .......... .......... .......... .......... 276 TAGTTAAAAG CATTCTTGCA CCAACTTTAA CCAACAAGAG CTATATCATG TAGGGGTCTG 60190 .......... .......... .......... .......... .......... .......... 276 TTGGTTGGAA GCTTCTAGGC GTCCTCGAGT CGTGCTAAGC ACGCGGAGTG TACGAATTGA 60130 .......... .......... .......... .......... .......... .......... 276 AGGAAAAAAG AGGAAATTGA GGCGGCAAAA TGAGGATTTA GGGCTGGGTC CATCTGGTTG 60070 .......... .......... .......... .......... .......... .......... 276 AGCATTGTTG GCGTTGTGCT TGTTGTGAGC GAGAAGAAAG AGTGAGGGGT CTGGGTTGAA 60010 .......... .......... .......... .......... .......... .......... 276 TTGGAGTTGG GCCGGGTGTT TCATAATGGG CCAAATGTAT GGTCTTAAAA GGAAGAAAGA 59950 .......... .......... .......... .......... .......... .......... 276 AAGGAACAGG TTGTTTGGTT TCTATATTTT ATCAAATTAA ACCGAATTTG ATAAAACGGG 59890 .......... .......... .......... .......... .......... .......... 276 AAGGAGATAA ATCATAAATT TAACTAATTA TTAAGCTTCT TAACTTCAAC AAGATAAAAG 59830 .......... .......... .......... .......... .......... .......... 276 TAATTATTTT GAAATAAAAG ATCAACTATA CCAATCAAAT CACAAATTAT TTTAGGGAAA 59770 .......... .......... .......... .......... .......... .......... 276 TAAAACACAG ACTAAAACAC AATTTTTGGT AAAACAAATT TTCCTAATCT TTATTAAAAG 59710 .......... .......... .......... .......... .......... .......... 276 TAGCAAGTAT ATGAATCTAA TATATATTGA GATGTATTTT ATAGGGAAAT GGCAAAATGG 59650 .......... .......... .......... .......... .......... .......... 276 CCTTGAAAAT GATTTCAAAA GTATTTTTTT ATTTTCGAAA ACAATTATTT CAAATTGTTT 59590 .......... .......... .......... .......... .......... .......... 276 GAAATTGAAG AAGCTTGAAA ATTAATTAAA TTGTGGAGGA TCAGAATTGA GTCTCAACAG 59530 .......... .......... .......... .......... .......... .......... 276 TAGATACACA AATCCTTGAC CCCAATAATT ATTTAATCTG CTGTTATCAG TTCATTGCAT 59470 |||||||||| .......... .......... .......... .......... .......... TTCATTGCAT 286 CTGGAAGCCG AAAAATTGGT AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT 59410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAAGCCG AAAAATTGGT AGTAACCGAT GCAGACCTTC GTTACTTAGA TGGATTAGTT 346 GAAGAGAAAG ATGGAGGACC TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG 59350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAAAG ATGGAGGACC TGCGTGGATT CAGATGATGG ATCGTTCTAC ACCAAATATG 406 TCCTATCAGG CTTGGCGTAG AGATCCCGAG GTAGCTTTCT CTCCCCTGGC CTTATAGTAT 59290 |||||||||| |||||||||| |||||||||| TCCTATCAGG CTTGGCGTAG AGATCCCGAG .......... .......... .......... 436 GTGTAATGAT AGGAGGGATT TAATTAGTTT GCACTTTCCT TTAATTGGAT TACATTTTAA 59230 .......... .......... .......... .......... .......... .......... 436 TGTCATGCTA GACGGGACCT CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC 59170 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .ACGGGACCT CCACAATATC GTAGCAGAAC TGTATATGAG GATGCCACTC 485 CAGAAATGTT GAGGGATTTC TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC 59110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATGTT GAGGGATTTC TTCTGGGAAG ATGAATTTCG ATTGAAGTGG GATGACATGC 545 TTATACATGC TGAAAC 59094 |||||||||| |||||| TTATACATGC TGAAAC 561 hqPGS_C08HBa0064M21.1-_SGN-E276622+ (61389 61114,59479 59320,59218 59094) ******************************************************************************** EST sequence 81 +strand 601 n (File: SGN-E292510+) 1 TCGGGGGTGG CTTCTTCTTC TTTTTTTATT ATGGGTTTGG TAGCGGCTTT GCTTGAGATT 61 TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 121 TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 181 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GTCTTCTGGC 241 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 301 ATTTCATCCT CTACCTCCAG TTCATTGCAT CTGGAAGCCG AAAAATTGGT AGTAACCGAT 361 GCAGACCTTC GTTACTTAGA TGGATTAGTT GAAGAGAAAG ATGGAGGACC TGCGTGGATT 421 CAGATGATGG ATCGTTCTAC ACCAAATATG TCCTATCAGG CTTGGCGTAC AGATCCCGAG 481 ACGGGACCTC CACAATATCG TAGCAGAACT GTATATGAGG ATGCCACTCC AGAAATGTTG 541 AGGGATTTCT TCTGGGAAGA TGAATTTCGA TTGAAGTGGG ATGACATGCT TATACATGCT 601 G Predicted gene structure (within gDNA segment 62114 to 58488): Exon 1 61433 61114 ( 320 n); cDNA 1 320 ( 320 n); score: 0.997 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 321 480 ( 160 n); score: 0.994 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 0.98), Pa: 0.987 (s: 1.00) Exon 3 59218 59098 ( 121 n); cDNA 481 601 ( 121 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E292510+ 0.997 601 1.000 C PGS_C08HBa0064M21.1-_SGN-E292510+ (61433 61114,59479 59320,59218 59098) Alignment (genomic DNA sequence = upper lines): TCGGGGGTTG CTTCTTCTTC TTTTTTTATT ATGGGTTTGG TAGCGGCTTT GCTTGAGATT 61374 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGGGGTGG CTTCTTCTTC TTTTTTTATT ATGGGTTTGG TAGCGGCTTT GCTTGAGATT 60 TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 61314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 120 TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 61254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 180 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GTCTTCTGGC 61194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GTCTTCTGGC 240 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 61134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 300 ATTTCATCCT CTACCTCCAG GTTTCTTCCA AAGTCTCTCT CTTTAATTTC TCATTTTCTG 61074 |||||||||| |||||||||| ATTTCATCCT CTACCTCCAG .......... .......... .......... .......... 320 TATTTCTCCT TTACATACCC GATTTCTAAA ACTAACTTTT AAAAATGCGA TCCCAGTTGA 61014 .......... .......... .......... .......... .......... .......... 320 CTGATGGATT AAAAATTTGG CTAACTTTAT TAAAGAAAAT GAATTGTGTT GGTTTTAAAA 60954 .......... .......... .......... .......... .......... .......... 320 ATCTTTAGAA AAATGAATAG ATATTAATTT GTACTATCAA GTAATGAAAA ATTAAAAGTT 60894 .......... .......... .......... .......... .......... .......... 320 CAAGCGTCTG GAAATGTTTT TAACTTAATA ATAATCTATA TCCAAGTTAA AGATTTGAAC 60834 .......... .......... .......... .......... .......... .......... 320 CAAATGGTTA GCTCAAATTC ATTAACGTGA ATTAAAGCTT TTTAATAACT ATGAAACAGC 60774 .......... .......... .......... .......... .......... .......... 320 TGGTTCTTAA GTTATTCTAC AAGCTTAAGT CTGCCTTAAC TAAATTGGGC TTTGAAAATT 60714 .......... .......... .......... .......... .......... .......... 320 GAAATACTTG TCACAAAATA GTGAAAGAAA GGTCATTAAA AAATCTCCCG GGAAATCATC 60654 .......... .......... .......... .......... .......... .......... 320 TAAGTTAGAT AATAAGTTGA GTAATCACAG TAAACAATGA GTTCCTCTGG GACTGCCGCT 60594 .......... .......... .......... .......... .......... .......... 320 ACCTGTTTCA GCTGCTGCTG GTTTTTGAGT TTTAACCCAA TAGTATTTGC TTCCCTTTAG 60534 .......... .......... .......... .......... .......... .......... 320 CGACTTGGTG GAGGTTGACT CGAAGAGAGG AATATGCAAG AGTCCAATGG ACTCAAATGG 60474 .......... .......... .......... .......... .......... .......... 320 AAGAGTGCAT GCAAAGAAAA CAAAGAAAAA GAATTAATAA CTAATAAAGA AGGGGCTGAT 60414 .......... .......... .......... .......... .......... .......... 320 ACTAATTTAA CATGTAAACA AACTCAATCA ACATTTGATG ATGCAAATTA AGTCTGCCAG 60354 .......... .......... .......... .......... .......... .......... 320 CGTAAAGAGG AAAAAAAGGA AACAAGGAGT ACAACTTCCA ATCCTAACAC ATAATAGAAG 60294 .......... .......... .......... .......... .......... .......... 320 TCAACATAAT CGCAATTTTA GTCAGCAAAT AAGTGTGGAA GGCATAGTTA AAAGCATTCT 60234 .......... .......... .......... .......... .......... .......... 320 TGCACCAACT TTAACCAACA AGAGCTATAT CATGTAGGGG TCTGTTGGTT GGAAGCTTCT 60174 .......... .......... .......... .......... .......... .......... 320 AGGCGTCCTC GAGTCGTGCT AAGCACGCGG AGTGTACGAA TTGAAGGAAA AAAGAGGAAA 60114 .......... .......... .......... .......... .......... .......... 320 TTGAGGCGGC AAAATGAGGA TTTAGGGCTG GGTCCATCTG GTTGAGCATT GTTGGCGTTG 60054 .......... .......... .......... .......... .......... .......... 320 TGCTTGTTGT GAGCGAGAAG AAAGAGTGAG GGGTCTGGGT TGAATTGGAG TTGGGCCGGG 59994 .......... .......... .......... .......... .......... .......... 320 TGTTTCATAA TGGGCCAAAT GTATGGTCTT AAAAGGAAGA AAGAAAGGAA CAGGTTGTTT 59934 .......... .......... .......... .......... .......... .......... 320 GGTTTCTATA TTTTATCAAA TTAAACCGAA TTTGATAAAA CGGGAAGGAG ATAAATCATA 59874 .......... .......... .......... .......... .......... .......... 320 AATTTAACTA ATTATTAAGC TTCTTAACTT CAACAAGATA AAAGTAATTA TTTTGAAATA 59814 .......... .......... .......... .......... .......... .......... 320 AAAGATCAAC TATACCAATC AAATCACAAA TTATTTTAGG GAAATAAAAC ACAGACTAAA 59754 .......... .......... .......... .......... .......... .......... 320 ACACAATTTT TGGTAAAACA AATTTTCCTA ATCTTTATTA AAAGTAGCAA GTATATGAAT 59694 .......... .......... .......... .......... .......... .......... 320 CTAATATATA TTGAGATGTA TTTTATAGGG AAATGGCAAA ATGGCCTTGA AAATGATTTC 59634 .......... .......... .......... .......... .......... .......... 320 AAAAGTATTT TTTTATTTTC GAAAACAATT ATTTCAAATT GTTTGAAATT GAAGAAGCTT 59574 .......... .......... .......... .......... .......... .......... 320 GAAAATTAAT TAAATTGTGG AGGATCAGAA TTGAGTCTCA ACAGTAGATA CACAAATCCT 59514 .......... .......... .......... .......... .......... .......... 320 TGACCCCAAT AATTATTTAA TCTGCTGTTA TCAGTTCATT GCATCTGGAA GCCGAAAAAT 59454 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTCATT GCATCTGGAA GCCGAAAAAT 346 TGGTAGTAAC CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG 59394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTAGTAAC CGATGCAGAC CTTCGTTACT TAGATGGATT AGTTGAAGAG AAAGATGGAG 406 GACCTGCGTG GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC 59334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCTGCGTG GATTCAGATG ATGGATCGTT CTACACCAAA TATGTCCTAT CAGGCTTGGC 466 GTAGAGATCC CGAGGTAGCT TTCTCTCCCC TGGCCTTATA GTATGTGTAA TGATAGGAGG 59274 ||| |||||| |||| GTACAGATCC CGAG...... .......... .......... .......... .......... 480 GATTTAATTA GTTTGCACTT TCCTTTAATT GGATTACATT TTAATGTCAT GCTAGACGGG 59214 ||||| .......... .......... .......... .......... .......... .....ACGGG 485 ACCTCCACAA TATCGTAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA 59154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCCACAA TATCGTAGCA GAACTGTATA TGAGGATGCC ACTCCAGAAA TGTTGAGGGA 545 TTTCTTCTGG GAAGATGAAT TTCGATTGAA GTGGGATGAC ATGCTTATAC ATGCTG 59098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTTCTTCTGG GAAGATGAAT TTCGATTGAA GTGGGATGAC ATGCTTATAC ATGCTG 601 hqPGS_C08HBa0064M21.1-_SGN-E292510+ (61433 61114,59479 59320,59218 59098) ******************************************************************************** EST sequence 133 +strand 530 n (File: SGN-E201544+) 1 TTTTACAAAG ACCAACTTTT GGGGAGGTAA TATTAGAGCT GGGGATGTTT ATGGCACCCA 61 TCTGGATTGC TGTTCTTGTT GGGGTCTTGG TTGGATGGTC ATGGAAGCCC AATTGGGCCA 121 ATCTTGCCAT TGATTCTGTT CCTACAACAC ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG 181 GCTTTTCAAC TCTCAAATTG CAAATTCCCT CTTGGATCAA GGAAACTCAC TCCCCACCCT 241 CCATTTCATC CTCTACCTCC AGTTCATTGC ATCTGGAAGC CGAAAAATTG GTAGTAACCG 301 ATGCAGACCT TCGTTACTTA GATGGATTAG TTGAAGAGAA AGATGGAGGA CCTGCGTGGA 361 TTCAGATGAT GGATCGTTCT ACACCAAATA TGTCCTATCA GGCTTGGCGT AGAGATCCCG 421 AGACGGGACC TCCACAATAT CGTAGCAGAA CTGTATATGA GGATGCCACT CCAGAAATGT 481 TGAGGGATTT CTTCTGGGAA GATGAATTTC GATTGAAGTG GGATGACATG Predicted gene structure (within gDNA segment 61975 to 58501): Exon 1 61375 61114 ( 262 n); cDNA 1 262 ( 262 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 263 422 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 59218 59111 ( 108 n); cDNA 423 530 ( 108 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E201544+ 1.000 530 1.000 C PGS_C08HBa0064M21.1-_SGN-E201544+ (61375 61114,59479 59320,59218 59111) Alignment (genomic DNA sequence = upper lines): TTTTACAAAG ACCAACTTTT GGGGAGGTAA TATTAGAGCT GGGGATGTTT ATGGCACCCA 61316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTACAAAG ACCAACTTTT GGGGAGGTAA TATTAGAGCT GGGGATGTTT ATGGCACCCA 60 TCTGGATTGC TGTTCTTGTT GGGGTCTTGG TTGGATGGTC ATGGAAGCCC AATTGGGCCA 61256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGATTGC TGTTCTTGTT GGGGTCTTGG TTGGATGGTC ATGGAAGCCC AATTGGGCCA 120 ATCTTGCCAT TGATTCTGTT CCTACAACAC ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG 61196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGCCAT TGATTCTGTT CCTACAACAC ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG 180 GCTTTTCAAC TCTCAAATTG CAAATTCCCT CTTGGATCAA GGAAACTCAC TCCCCACCCT 61136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTCAAC TCTCAAATTG CAAATTCCCT CTTGGATCAA GGAAACTCAC TCCCCACCCT 240 CCATTTCATC CTCTACCTCC AGGTTTCTTC CAAAGTCTCT CTCTTTAATT TCTCATTTTC 61076 |||||||||| |||||||||| || CCATTTCATC CTCTACCTCC AG........ .......... .......... .......... 262 TGTATTTCTC CTTTACATAC CCGATTTCTA AAACTAACTT TTAAAAATGC GATCCCAGTT 61016 .......... .......... .......... .......... .......... .......... 262 GACTGATGGA TTAAAAATTT GGCTAACTTT ATTAAAGAAA ATGAATTGTG TTGGTTTTAA 60956 .......... .......... .......... .......... .......... .......... 262 AAATCTTTAG AAAAATGAAT AGATATTAAT TTGTACTATC AAGTAATGAA AAATTAAAAG 60896 .......... .......... .......... .......... .......... .......... 262 TTCAAGCGTC TGGAAATGTT TTTAACTTAA TAATAATCTA TATCCAAGTT AAAGATTTGA 60836 .......... .......... .......... .......... .......... .......... 262 ACCAAATGGT TAGCTCAAAT TCATTAACGT GAATTAAAGC TTTTTAATAA CTATGAAACA 60776 .......... .......... .......... .......... .......... .......... 262 GCTGGTTCTT AAGTTATTCT ACAAGCTTAA GTCTGCCTTA ACTAAATTGG GCTTTGAAAA 60716 .......... .......... .......... .......... .......... .......... 262 TTGAAATACT TGTCACAAAA TAGTGAAAGA AAGGTCATTA AAAAATCTCC CGGGAAATCA 60656 .......... .......... .......... .......... .......... .......... 262 TCTAAGTTAG ATAATAAGTT GAGTAATCAC AGTAAACAAT GAGTTCCTCT GGGACTGCCG 60596 .......... .......... .......... .......... .......... .......... 262 CTACCTGTTT CAGCTGCTGC TGGTTTTTGA GTTTTAACCC AATAGTATTT GCTTCCCTTT 60536 .......... .......... .......... .......... .......... .......... 262 AGCGACTTGG TGGAGGTTGA CTCGAAGAGA GGAATATGCA AGAGTCCAAT GGACTCAAAT 60476 .......... .......... .......... .......... .......... .......... 262 GGAAGAGTGC ATGCAAAGAA AACAAAGAAA AAGAATTAAT AACTAATAAA GAAGGGGCTG 60416 .......... .......... .......... .......... .......... .......... 262 ATACTAATTT AACATGTAAA CAAACTCAAT CAACATTTGA TGATGCAAAT TAAGTCTGCC 60356 .......... .......... .......... .......... .......... .......... 262 AGCGTAAAGA GGAAAAAAAG GAAACAAGGA GTACAACTTC CAATCCTAAC ACATAATAGA 60296 .......... .......... .......... .......... .......... .......... 262 AGTCAACATA ATCGCAATTT TAGTCAGCAA ATAAGTGTGG AAGGCATAGT TAAAAGCATT 60236 .......... .......... .......... .......... .......... .......... 262 CTTGCACCAA CTTTAACCAA CAAGAGCTAT ATCATGTAGG GGTCTGTTGG TTGGAAGCTT 60176 .......... .......... .......... .......... .......... .......... 262 CTAGGCGTCC TCGAGTCGTG CTAAGCACGC GGAGTGTACG AATTGAAGGA AAAAAGAGGA 60116 .......... .......... .......... .......... .......... .......... 262 AATTGAGGCG GCAAAATGAG GATTTAGGGC TGGGTCCATC TGGTTGAGCA TTGTTGGCGT 60056 .......... .......... .......... .......... .......... .......... 262 TGTGCTTGTT GTGAGCGAGA AGAAAGAGTG AGGGGTCTGG GTTGAATTGG AGTTGGGCCG 59996 .......... .......... .......... .......... .......... .......... 262 GGTGTTTCAT AATGGGCCAA ATGTATGGTC TTAAAAGGAA GAAAGAAAGG AACAGGTTGT 59936 .......... .......... .......... .......... .......... .......... 262 TTGGTTTCTA TATTTTATCA AATTAAACCG AATTTGATAA AACGGGAAGG AGATAAATCA 59876 .......... .......... .......... .......... .......... .......... 262 TAAATTTAAC TAATTATTAA GCTTCTTAAC TTCAACAAGA TAAAAGTAAT TATTTTGAAA 59816 .......... .......... .......... .......... .......... .......... 262 TAAAAGATCA ACTATACCAA TCAAATCACA AATTATTTTA GGGAAATAAA ACACAGACTA 59756 .......... .......... .......... .......... .......... .......... 262 AAACACAATT TTTGGTAAAA CAAATTTTCC TAATCTTTAT TAAAAGTAGC AAGTATATGA 59696 .......... .......... .......... .......... .......... .......... 262 ATCTAATATA TATTGAGATG TATTTTATAG GGAAATGGCA AAATGGCCTT GAAAATGATT 59636 .......... .......... .......... .......... .......... .......... 262 TCAAAAGTAT TTTTTTATTT TCGAAAACAA TTATTTCAAA TTGTTTGAAA TTGAAGAAGC 59576 .......... .......... .......... .......... .......... .......... 262 TTGAAAATTA ATTAAATTGT GGAGGATCAG AATTGAGTCT CAACAGTAGA TACACAAATC 59516 .......... .......... .......... .......... .......... .......... 262 CTTGACCCCA ATAATTATTT AATCTGCTGT TATCAGTTCA TTGCATCTGG AAGCCGAAAA 59456 |||| |||||||||| |||||||||| .......... .......... .......... ......TTCA TTGCATCTGG AAGCCGAAAA 286 ATTGGTAGTA ACCGATGCAG ACCTTCGTTA CTTAGATGGA TTAGTTGAAG AGAAAGATGG 59396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTAGTA ACCGATGCAG ACCTTCGTTA CTTAGATGGA TTAGTTGAAG AGAAAGATGG 346 AGGACCTGCG TGGATTCAGA TGATGGATCG TTCTACACCA AATATGTCCT ATCAGGCTTG 59336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACCTGCG TGGATTCAGA TGATGGATCG TTCTACACCA AATATGTCCT ATCAGGCTTG 406 GCGTAGAGAT CCCGAGGTAG CTTTCTCTCC CCTGGCCTTA TAGTATGTGT AATGATAGGA 59276 |||||||||| |||||| GCGTAGAGAT CCCGAG.... .......... .......... .......... .......... 422 GGGATTTAAT TAGTTTGCAC TTTCCTTTAA TTGGATTACA TTTTAATGTC ATGCTAGACG 59216 ||| .......... .......... .......... .......... .......... .......ACG 425 GGACCTCCAC AATATCGTAG CAGAACTGTA TATGAGGATG CCACTCCAGA AATGTTGAGG 59156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTCCAC AATATCGTAG CAGAACTGTA TATGAGGATG CCACTCCAGA AATGTTGAGG 485 GATTTCTTCT GGGAAGATGA ATTTCGATTG AAGTGGGATG ACATG 59111 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATTTCTTCT GGGAAGATGA ATTTCGATTG AAGTGGGATG ACATG 530 hqPGS_C08HBa0064M21.1-_SGN-E201544+ (61375 61114,59479 59320,59218 59111) ******************************************************************************** EST sequence 112 +strand 581 n (File: SGN-E269100+) 1 TTTATATTTA CGATTGAATC GGGGGTTGCT TCTTCTTCTT TTTTTATTAT GGGTTTGGTA 61 GCGGCTTTGC TTGAGATTTT ACAAAGACCA ACTTTTGGGG AGGTAATATT AGAGCTGGGG 121 ATGTTTATGG CACCCATCTG GATTGCTGTT CTTGTTGGGG TCTTGGTTGG ATGGTCATGG 181 AAGCCCAATT GGGCCAATCT TGCCATTGAT TCTGTTCCTA CAACACATGT TCCTTCTCTC 241 CAAAACTTGT CTTCTGGCTT TTCAACTATC AAATTGCAAA TTCCCTCTTG GATCAAGGAA 301 ACTCACTCCC CACCCTCCAT TTCATCCTCT ACCTCCAGTT CATTGCATCT GGAAGCCGAA 361 AAATTGGTAG TAACCGATGC AGACCTTCGT TACTTAGATG GATTATTTGA AGAGAAAGAT 421 GGAGGACCTG CGTGGATTCA TATGATGGAT CGTTCTACAC CAAATATGTC CTATCAGGCT 481 TGGCGTAAAG ATCCCGAGAC GGGACCTCCA CAATATCGTA GCACAACTGT ATATGAGGAT 541 GCCACTCCAA AAATGTTGAG GGATTTCTTC TGGGAAGATG A Predicted gene structure (within gDNA segment 62051 to 58526): Exon 1 61451 61114 ( 338 n); cDNA 1 338 ( 338 n); score: 0.997 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 339 498 ( 160 n); score: 0.981 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 0.98), Pa: 0.987 (s: 0.98) Exon 3 59218 59136 ( 83 n); cDNA 499 581 ( 83 n); score: 0.976 MATCH C08HBa0064M21.1- SGN-E269100+ 0.990 581 1.000 C PGS_C08HBa0064M21.1-_SGN-E269100+ (61451 61114,59479 59320,59218 59136) Alignment (genomic DNA sequence = upper lines): TTTATATTTA CGATTGAATC GGGGGTTGCT TCTTCTTCTT TTTTTATTAT GGGTTTGGTA 61392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATATTTA CGATTGAATC GGGGGTTGCT TCTTCTTCTT TTTTTATTAT GGGTTTGGTA 60 GCGGCTTTGC TTGAGATTTT ACAAAGACCA ACTTTTGGGG AGGTAATATT AGAGCTGGGG 61332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGCTTTGC TTGAGATTTT ACAAAGACCA ACTTTTGGGG AGGTAATATT AGAGCTGGGG 120 ATGTTTATGG CACCCATCTG GATTGCTGTT CTTGTTGGGG TCTTGGTTGG ATGGTCATGG 61272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTATGG CACCCATCTG GATTGCTGTT CTTGTTGGGG TCTTGGTTGG ATGGTCATGG 180 AAGCCCAATT GGGCCAATCT TGCCATTGAT TCTGTTCCTA CAACACATGT TCCTTCTCTC 61212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCAATT GGGCCAATCT TGCCATTGAT TCTGTTCCTA CAACACATGT TCCTTCTCTC 240 CAAAACTTGT CTTCTGGCTT TTCAACTCTC AAATTGCAAA TTCCCTCTTG GATCAAGGAA 61152 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CAAAACTTGT CTTCTGGCTT TTCAACTATC AAATTGCAAA TTCCCTCTTG GATCAAGGAA 300 ACTCACTCCC CACCCTCCAT TTCATCCTCT ACCTCCAGGT TTCTTCCAAA GTCTCTCTCT 61092 |||||||||| |||||||||| |||||||||| |||||||| ACTCACTCCC CACCCTCCAT TTCATCCTCT ACCTCCAG.. .......... .......... 338 TTAATTTCTC ATTTTCTGTA TTTCTCCTTT ACATACCCGA TTTCTAAAAC TAACTTTTAA 61032 .......... .......... .......... .......... .......... .......... 338 AAATGCGATC CCAGTTGACT GATGGATTAA AAATTTGGCT AACTTTATTA AAGAAAATGA 60972 .......... .......... .......... .......... .......... .......... 338 ATTGTGTTGG TTTTAAAAAT CTTTAGAAAA ATGAATAGAT ATTAATTTGT ACTATCAAGT 60912 .......... .......... .......... .......... .......... .......... 338 AATGAAAAAT TAAAAGTTCA AGCGTCTGGA AATGTTTTTA ACTTAATAAT AATCTATATC 60852 .......... .......... .......... .......... .......... .......... 338 CAAGTTAAAG ATTTGAACCA AATGGTTAGC TCAAATTCAT TAACGTGAAT TAAAGCTTTT 60792 .......... .......... .......... .......... .......... .......... 338 TAATAACTAT GAAACAGCTG GTTCTTAAGT TATTCTACAA GCTTAAGTCT GCCTTAACTA 60732 .......... .......... .......... .......... .......... .......... 338 AATTGGGCTT TGAAAATTGA AATACTTGTC ACAAAATAGT GAAAGAAAGG TCATTAAAAA 60672 .......... .......... .......... .......... .......... .......... 338 ATCTCCCGGG AAATCATCTA AGTTAGATAA TAAGTTGAGT AATCACAGTA AACAATGAGT 60612 .......... .......... .......... .......... .......... .......... 338 TCCTCTGGGA CTGCCGCTAC CTGTTTCAGC TGCTGCTGGT TTTTGAGTTT TAACCCAATA 60552 .......... .......... .......... .......... .......... .......... 338 GTATTTGCTT CCCTTTAGCG ACTTGGTGGA GGTTGACTCG AAGAGAGGAA TATGCAAGAG 60492 .......... .......... .......... .......... .......... .......... 338 TCCAATGGAC TCAAATGGAA GAGTGCATGC AAAGAAAACA AAGAAAAAGA ATTAATAACT 60432 .......... .......... .......... .......... .......... .......... 338 AATAAAGAAG GGGCTGATAC TAATTTAACA TGTAAACAAA CTCAATCAAC ATTTGATGAT 60372 .......... .......... .......... .......... .......... .......... 338 GCAAATTAAG TCTGCCAGCG TAAAGAGGAA AAAAAGGAAA CAAGGAGTAC AACTTCCAAT 60312 .......... .......... .......... .......... .......... .......... 338 CCTAACACAT AATAGAAGTC AACATAATCG CAATTTTAGT CAGCAAATAA GTGTGGAAGG 60252 .......... .......... .......... .......... .......... .......... 338 CATAGTTAAA AGCATTCTTG CACCAACTTT AACCAACAAG AGCTATATCA TGTAGGGGTC 60192 .......... .......... .......... .......... .......... .......... 338 TGTTGGTTGG AAGCTTCTAG GCGTCCTCGA GTCGTGCTAA GCACGCGGAG TGTACGAATT 60132 .......... .......... .......... .......... .......... .......... 338 GAAGGAAAAA AGAGGAAATT GAGGCGGCAA AATGAGGATT TAGGGCTGGG TCCATCTGGT 60072 .......... .......... .......... .......... .......... .......... 338 TGAGCATTGT TGGCGTTGTG CTTGTTGTGA GCGAGAAGAA AGAGTGAGGG GTCTGGGTTG 60012 .......... .......... .......... .......... .......... .......... 338 AATTGGAGTT GGGCCGGGTG TTTCATAATG GGCCAAATGT ATGGTCTTAA AAGGAAGAAA 59952 .......... .......... .......... .......... .......... .......... 338 GAAAGGAACA GGTTGTTTGG TTTCTATATT TTATCAAATT AAACCGAATT TGATAAAACG 59892 .......... .......... .......... .......... .......... .......... 338 GGAAGGAGAT AAATCATAAA TTTAACTAAT TATTAAGCTT CTTAACTTCA ACAAGATAAA 59832 .......... .......... .......... .......... .......... .......... 338 AGTAATTATT TTGAAATAAA AGATCAACTA TACCAATCAA ATCACAAATT ATTTTAGGGA 59772 .......... .......... .......... .......... .......... .......... 338 AATAAAACAC AGACTAAAAC ACAATTTTTG GTAAAACAAA TTTTCCTAAT CTTTATTAAA 59712 .......... .......... .......... .......... .......... .......... 338 AGTAGCAAGT ATATGAATCT AATATATATT GAGATGTATT TTATAGGGAA ATGGCAAAAT 59652 .......... .......... .......... .......... .......... .......... 338 GGCCTTGAAA ATGATTTCAA AAGTATTTTT TTATTTTCGA AAACAATTAT TTCAAATTGT 59592 .......... .......... .......... .......... .......... .......... 338 TTGAAATTGA AGAAGCTTGA AAATTAATTA AATTGTGGAG GATCAGAATT GAGTCTCAAC 59532 .......... .......... .......... .......... .......... .......... 338 AGTAGATACA CAAATCCTTG ACCCCAATAA TTATTTAATC TGCTGTTATC AGTTCATTGC 59472 |||||||| .......... .......... .......... .......... .......... ..TTCATTGC 346 ATCTGGAAGC CGAAAAATTG GTAGTAACCG ATGCAGACCT TCGTTACTTA GATGGATTAG 59412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATCTGGAAGC CGAAAAATTG GTAGTAACCG ATGCAGACCT TCGTTACTTA GATGGATTAT 406 TTGAAGAGAA AGATGGAGGA CCTGCGTGGA TTCAGATGAT GGATCGTTCT ACACCAAATA 59352 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTGAAGAGAA AGATGGAGGA CCTGCGTGGA TTCATATGAT GGATCGTTCT ACACCAAATA 466 TGTCCTATCA GGCTTGGCGT AGAGATCCCG AGGTAGCTTT CTCTCCCCTG GCCTTATAGT 59292 |||||||||| |||||||||| | |||||||| || TGTCCTATCA GGCTTGGCGT AAAGATCCCG AG........ .......... .......... 498 ATGTGTAATG ATAGGAGGGA TTTAATTAGT TTGCACTTTC CTTTAATTGG ATTACATTTT 59232 .......... .......... .......... .......... .......... .......... 498 AATGTCATGC TAGACGGGAC CTCCACAATA TCGTAGCAGA ACTGTATATG AGGATGCCAC 59172 ||||||| |||||||||| |||||||| | |||||||||| |||||||||| .......... ...ACGGGAC CTCCACAATA TCGTAGCACA ACTGTATATG AGGATGCCAC 545 TCCAGAAATG TTGAGGGATT TCTTCTGGGA AGATGA 59136 |||| ||||| |||||||||| |||||||||| |||||| TCCAAAAATG TTGAGGGATT TCTTCTGGGA AGATGA 581 hqPGS_C08HBa0064M21.1-_SGN-E269100+ (61451 61114,59479 59320,59218 59136) ******************************************************************************** EST sequence 83 +strand 588 n (File: SGN-E296472+) 1 TCTTTATCTT TCTCTATCTT CTTCTTCTTC TTCTTTTTTT TGAAACCCTC GACTCGTCGC 61 CGTGTTCAAA GTTTATATTT ACGATTGAAT CGGGGGTTGC TTCTTCTTCT TTTTTTATTA 121 TGGGTTTGGT AGCGGCTTTG CTTGAGATTT TACAAAGACC AACTTTTGGG GAGGTAATAT 181 TAGAGCTGGG GATGTTTATG GCACCCATCT GGATTGCTGT TCTTGTTGGG GTCTTGGTTG 241 GATGGTCATG GAAGCCCAAT TGGGCCAATC TTGCCATTGA TTCTGTTCCT ACAACACATG 301 TTCCTTCTCT CCAAAACTTG TCTTCTGGCT TTTCAACTCT CAAATTGCAA ATTCCCTCTT 361 GGATCAAGGA AACTCACTCC CCACCCTCCA TTTCATCCTC TACCTCCAGT TCATTGCATC 421 TGGAAGCCGA AAAATTGGTA GTAACCGATG CAGACCTTCG TTACTTAGAT GGATTAGTTG 481 AAGAGAAAGA TGGAGGACCT GCGTGGATTC AGATGATGGA TCGTTCTACA CCAAATATGT 541 CCTATCAGGC TTGGCGTAGA GATCCCGAGA CGGGACCTCC ACAATATC Predicted gene structure (within gDNA segment 62122 to 58520): Exon 1 61522 61114 ( 409 n); cDNA 1 409 ( 409 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 410 569 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 0) Exon 3 59218 59200 ( 19 n); cDNA 570 588 ( 19 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E296472+ 1.000 588 1.000 C PGS_C08HBa0064M21.1-_SGN-E296472+ (61522 61114,59479 59320,59218 59200) Alignment (genomic DNA sequence = upper lines): TCTTTATCTT TCTCTATCTT CTTCTTCTTC TTCTTTTTTT TGAAACCCTC GACTCGTCGC 61463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTATCTT TCTCTATCTT CTTCTTCTTC TTCTTTTTTT TGAAACCCTC GACTCGTCGC 60 CGTGTTCAAA GTTTATATTT ACGATTGAAT CGGGGGTTGC TTCTTCTTCT TTTTTTATTA 61403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGTTCAAA GTTTATATTT ACGATTGAAT CGGGGGTTGC TTCTTCTTCT TTTTTTATTA 120 TGGGTTTGGT AGCGGCTTTG CTTGAGATTT TACAAAGACC AACTTTTGGG GAGGTAATAT 61343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTTGGT AGCGGCTTTG CTTGAGATTT TACAAAGACC AACTTTTGGG GAGGTAATAT 180 TAGAGCTGGG GATGTTTATG GCACCCATCT GGATTGCTGT TCTTGTTGGG GTCTTGGTTG 61283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGCTGGG GATGTTTATG GCACCCATCT GGATTGCTGT TCTTGTTGGG GTCTTGGTTG 240 GATGGTCATG GAAGCCCAAT TGGGCCAATC TTGCCATTGA TTCTGTTCCT ACAACACATG 61223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTCATG GAAGCCCAAT TGGGCCAATC TTGCCATTGA TTCTGTTCCT ACAACACATG 300 TTCCTTCTCT CCAAAACTTG TCTTCTGGCT TTTCAACTCT CAAATTGCAA ATTCCCTCTT 61163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTCTCT CCAAAACTTG TCTTCTGGCT TTTCAACTCT CAAATTGCAA ATTCCCTCTT 360 GGATCAAGGA AACTCACTCC CCACCCTCCA TTTCATCCTC TACCTCCAGG TTTCTTCCAA 61103 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGATCAAGGA AACTCACTCC CCACCCTCCA TTTCATCCTC TACCTCCAG. .......... 409 AGTCTCTCTC TTTAATTTCT CATTTTCTGT ATTTCTCCTT TACATACCCG ATTTCTAAAA 61043 .......... .......... .......... .......... .......... .......... 409 CTAACTTTTA AAAATGCGAT CCCAGTTGAC TGATGGATTA AAAATTTGGC TAACTTTATT 60983 .......... .......... .......... .......... .......... .......... 409 AAAGAAAATG AATTGTGTTG GTTTTAAAAA TCTTTAGAAA AATGAATAGA TATTAATTTG 60923 .......... .......... .......... .......... .......... .......... 409 TACTATCAAG TAATGAAAAA TTAAAAGTTC AAGCGTCTGG AAATGTTTTT AACTTAATAA 60863 .......... .......... .......... .......... .......... .......... 409 TAATCTATAT CCAAGTTAAA GATTTGAACC AAATGGTTAG CTCAAATTCA TTAACGTGAA 60803 .......... .......... .......... .......... .......... .......... 409 TTAAAGCTTT TTAATAACTA TGAAACAGCT GGTTCTTAAG TTATTCTACA AGCTTAAGTC 60743 .......... .......... .......... .......... .......... .......... 409 TGCCTTAACT AAATTGGGCT TTGAAAATTG AAATACTTGT CACAAAATAG TGAAAGAAAG 60683 .......... .......... .......... .......... .......... .......... 409 GTCATTAAAA AATCTCCCGG GAAATCATCT AAGTTAGATA ATAAGTTGAG TAATCACAGT 60623 .......... .......... .......... .......... .......... .......... 409 AAACAATGAG TTCCTCTGGG ACTGCCGCTA CCTGTTTCAG CTGCTGCTGG TTTTTGAGTT 60563 .......... .......... .......... .......... .......... .......... 409 TTAACCCAAT AGTATTTGCT TCCCTTTAGC GACTTGGTGG AGGTTGACTC GAAGAGAGGA 60503 .......... .......... .......... .......... .......... .......... 409 ATATGCAAGA GTCCAATGGA CTCAAATGGA AGAGTGCATG CAAAGAAAAC AAAGAAAAAG 60443 .......... .......... .......... .......... .......... .......... 409 AATTAATAAC TAATAAAGAA GGGGCTGATA CTAATTTAAC ATGTAAACAA ACTCAATCAA 60383 .......... .......... .......... .......... .......... .......... 409 CATTTGATGA TGCAAATTAA GTCTGCCAGC GTAAAGAGGA AAAAAAGGAA ACAAGGAGTA 60323 .......... .......... .......... .......... .......... .......... 409 CAACTTCCAA TCCTAACACA TAATAGAAGT CAACATAATC GCAATTTTAG TCAGCAAATA 60263 .......... .......... .......... .......... .......... .......... 409 AGTGTGGAAG GCATAGTTAA AAGCATTCTT GCACCAACTT TAACCAACAA GAGCTATATC 60203 .......... .......... .......... .......... .......... .......... 409 ATGTAGGGGT CTGTTGGTTG GAAGCTTCTA GGCGTCCTCG AGTCGTGCTA AGCACGCGGA 60143 .......... .......... .......... .......... .......... .......... 409 GTGTACGAAT TGAAGGAAAA AAGAGGAAAT TGAGGCGGCA AAATGAGGAT TTAGGGCTGG 60083 .......... .......... .......... .......... .......... .......... 409 GTCCATCTGG TTGAGCATTG TTGGCGTTGT GCTTGTTGTG AGCGAGAAGA AAGAGTGAGG 60023 .......... .......... .......... .......... .......... .......... 409 GGTCTGGGTT GAATTGGAGT TGGGCCGGGT GTTTCATAAT GGGCCAAATG TATGGTCTTA 59963 .......... .......... .......... .......... .......... .......... 409 AAAGGAAGAA AGAAAGGAAC AGGTTGTTTG GTTTCTATAT TTTATCAAAT TAAACCGAAT 59903 .......... .......... .......... .......... .......... .......... 409 TTGATAAAAC GGGAAGGAGA TAAATCATAA ATTTAACTAA TTATTAAGCT TCTTAACTTC 59843 .......... .......... .......... .......... .......... .......... 409 AACAAGATAA AAGTAATTAT TTTGAAATAA AAGATCAACT ATACCAATCA AATCACAAAT 59783 .......... .......... .......... .......... .......... .......... 409 TATTTTAGGG AAATAAAACA CAGACTAAAA CACAATTTTT GGTAAAACAA ATTTTCCTAA 59723 .......... .......... .......... .......... .......... .......... 409 TCTTTATTAA AAGTAGCAAG TATATGAATC TAATATATAT TGAGATGTAT TTTATAGGGA 59663 .......... .......... .......... .......... .......... .......... 409 AATGGCAAAA TGGCCTTGAA AATGATTTCA AAAGTATTTT TTTATTTTCG AAAACAATTA 59603 .......... .......... .......... .......... .......... .......... 409 TTTCAAATTG TTTGAAATTG AAGAAGCTTG AAAATTAATT AAATTGTGGA GGATCAGAAT 59543 .......... .......... .......... .......... .......... .......... 409 TGAGTCTCAA CAGTAGATAC ACAAATCCTT GACCCCAATA ATTATTTAAT CTGCTGTTAT 59483 .......... .......... .......... .......... .......... .......... 409 CAGTTCATTG CATCTGGAAG CCGAAAAATT GGTAGTAACC GATGCAGACC TTCGTTACTT 59423 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TTCATTG CATCTGGAAG CCGAAAAATT GGTAGTAACC GATGCAGACC TTCGTTACTT 466 AGATGGATTA GTTGAAGAGA AAGATGGAGG ACCTGCGTGG ATTCAGATGA TGGATCGTTC 59363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGATTA GTTGAAGAGA AAGATGGAGG ACCTGCGTGG ATTCAGATGA TGGATCGTTC 526 TACACCAAAT ATGTCCTATC AGGCTTGGCG TAGAGATCCC GAGGTAGCTT TCTCTCCCCT 59303 |||||||||| |||||||||| |||||||||| |||||||||| ||| TACACCAAAT ATGTCCTATC AGGCTTGGCG TAGAGATCCC GAG....... .......... 569 GGCCTTATAG TATGTGTAAT GATAGGAGGG ATTTAATTAG TTTGCACTTT CCTTTAATTG 59243 .......... .......... .......... .......... .......... .......... 569 GATTACATTT TAATGTCATG CTAGACGGGA CCTCCACAAT ATC 59200 |||||| |||||||||| ||| .......... .......... ....ACGGGA CCTCCACAAT ATC 588 hqPGS_C08HBa0064M21.1-_SGN-E296472+ (61522 61114,59479 59320,59218 59200) ******************************************************************************** EST sequence 90 +strand 552 n (File: SGN-E278755+) 1 TTTTTTGAAA CCCTCGACTC GTCGCCGTGT TCAAAGTTTA TATTTACGAT TGAATCGGGG 61 GTTGCTTCTT CTTCTTTTTT TATTATGGGT TTGGTAGCGG CTTTGCTTGA GATTTTACAA 121 AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT TTATGGCACC CATCGGATTG 181 CTGTTCTTGT TGGGGTCTTG GTTGGATGGT CATGGAAGCC CAATTGGGCC AATCTTGCCA 241 TTGATTCTGT ACCTACAACA CATGTTCCTT CTCTCCAAAA CTTGTCTTCT GGCTTTTCAA 301 CTCTCAAATT GCAAATTCCC TCTTGGATCA AGGAAACTCA CTCCCCACAC TCCATTTCAT 361 CCTCTACCTC CAGTTCATTG CATCTGGAAG CCGAAAAATT GGTAGTAACC GATGCAGACC 421 TTCGTTACTT AGATGGATTA GTTGAAGAGA AAGATGGAGG ACCTGCGTGG ATTCAGATGA 481 TGGATCGTTC TACACCAAAT ATGTCCTATC AGGCTTGGCG TAGAGATCCC GAGACGGGAC 541 CTTCACAATA TC Predicted gene structure (within gDNA segment 62087 to 58520): Exon 1 61487 61114 ( 374 n); cDNA 1 373 ( 373 n); score: 0.992 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 0.98), Pa: 0.854 (s: 1.00) Exon 2 59479 59320 ( 160 n); cDNA 374 533 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 (s: 1.00), Pa: 0.987 (s: 0) Exon 3 59218 59200 ( 19 n); cDNA 534 552 ( 19 n); score: 0.947 MATCH C08HBa0064M21.1- SGN-E278755+ 0.994 553 1.002 C PGS_C08HBa0064M21.1-_SGN-E278755+ (61487 61114,59479 59320,59218 59200) Alignment (genomic DNA sequence = upper lines): TTTTTTGAAA CCCTCGACTC GTCGCCGTGT TCAAAGTTTA TATTTACGAT TGAATCGGGG 61428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTGAAA CCCTCGACTC GTCGCCGTGT TCAAAGTTTA TATTTACGAT TGAATCGGGG 60 GTTGCTTCTT CTTCTTTTTT TATTATGGGT TTGGTAGCGG CTTTGCTTGA GATTTTACAA 61368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTTCTT CTTCTTTTTT TATTATGGGT TTGGTAGCGG CTTTGCTTGA GATTTTACAA 120 AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT TTATGGCACC CATCTGGATT 61308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT TTATGGCACC CATC-GGATT 179 GCTGTTCTTG TTGGGGTCTT GGTTGGATGG TCATGGAAGC CCAATTGGGC CAATCTTGCC 61248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTCTTG TTGGGGTCTT GGTTGGATGG TCATGGAAGC CCAATTGGGC CAATCTTGCC 239 ATTGATTCTG TTCCTACAAC ACATGTTCCT TCTCTCCAAA ACTTGTCTTC TGGCTTTTCA 61188 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATTCTG TACCTACAAC ACATGTTCCT TCTCTCCAAA ACTTGTCTTC TGGCTTTTCA 299 ACTCTCAAAT TGCAAATTCC CTCTTGGATC AAGGAAACTC ACTCCCCACC CTCCATTTCA 61128 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACTCTCAAAT TGCAAATTCC CTCTTGGATC AAGGAAACTC ACTCCCCACA CTCCATTTCA 359 TCCTCTACCT CCAGGTTTCT TCCAAAGTCT CTCTCTTTAA TTTCTCATTT TCTGTATTTC 61068 |||||||||| |||| TCCTCTACCT CCAG...... .......... .......... .......... .......... 373 TCCTTTACAT ACCCGATTTC TAAAACTAAC TTTTAAAAAT GCGATCCCAG TTGACTGATG 61008 .......... .......... .......... .......... .......... .......... 373 GATTAAAAAT TTGGCTAACT TTATTAAAGA AAATGAATTG TGTTGGTTTT AAAAATCTTT 60948 .......... .......... .......... .......... .......... .......... 373 AGAAAAATGA ATAGATATTA ATTTGTACTA TCAAGTAATG AAAAATTAAA AGTTCAAGCG 60888 .......... .......... .......... .......... .......... .......... 373 TCTGGAAATG TTTTTAACTT AATAATAATC TATATCCAAG TTAAAGATTT GAACCAAATG 60828 .......... .......... .......... .......... .......... .......... 373 GTTAGCTCAA ATTCATTAAC GTGAATTAAA GCTTTTTAAT AACTATGAAA CAGCTGGTTC 60768 .......... .......... .......... .......... .......... .......... 373 TTAAGTTATT CTACAAGCTT AAGTCTGCCT TAACTAAATT GGGCTTTGAA AATTGAAATA 60708 .......... .......... .......... .......... .......... .......... 373 CTTGTCACAA AATAGTGAAA GAAAGGTCAT TAAAAAATCT CCCGGGAAAT CATCTAAGTT 60648 .......... .......... .......... .......... .......... .......... 373 AGATAATAAG TTGAGTAATC ACAGTAAACA ATGAGTTCCT CTGGGACTGC CGCTACCTGT 60588 .......... .......... .......... .......... .......... .......... 373 TTCAGCTGCT GCTGGTTTTT GAGTTTTAAC CCAATAGTAT TTGCTTCCCT TTAGCGACTT 60528 .......... .......... .......... .......... .......... .......... 373 GGTGGAGGTT GACTCGAAGA GAGGAATATG CAAGAGTCCA ATGGACTCAA ATGGAAGAGT 60468 .......... .......... .......... .......... .......... .......... 373 GCATGCAAAG AAAACAAAGA AAAAGAATTA ATAACTAATA AAGAAGGGGC TGATACTAAT 60408 .......... .......... .......... .......... .......... .......... 373 TTAACATGTA AACAAACTCA ATCAACATTT GATGATGCAA ATTAAGTCTG CCAGCGTAAA 60348 .......... .......... .......... .......... .......... .......... 373 GAGGAAAAAA AGGAAACAAG GAGTACAACT TCCAATCCTA ACACATAATA GAAGTCAACA 60288 .......... .......... .......... .......... .......... .......... 373 TAATCGCAAT TTTAGTCAGC AAATAAGTGT GGAAGGCATA GTTAAAAGCA TTCTTGCACC 60228 .......... .......... .......... .......... .......... .......... 373 AACTTTAACC AACAAGAGCT ATATCATGTA GGGGTCTGTT GGTTGGAAGC TTCTAGGCGT 60168 .......... .......... .......... .......... .......... .......... 373 CCTCGAGTCG TGCTAAGCAC GCGGAGTGTA CGAATTGAAG GAAAAAAGAG GAAATTGAGG 60108 .......... .......... .......... .......... .......... .......... 373 CGGCAAAATG AGGATTTAGG GCTGGGTCCA TCTGGTTGAG CATTGTTGGC GTTGTGCTTG 60048 .......... .......... .......... .......... .......... .......... 373 TTGTGAGCGA GAAGAAAGAG TGAGGGGTCT GGGTTGAATT GGAGTTGGGC CGGGTGTTTC 59988 .......... .......... .......... .......... .......... .......... 373 ATAATGGGCC AAATGTATGG TCTTAAAAGG AAGAAAGAAA GGAACAGGTT GTTTGGTTTC 59928 .......... .......... .......... .......... .......... .......... 373 TATATTTTAT CAAATTAAAC CGAATTTGAT AAAACGGGAA GGAGATAAAT CATAAATTTA 59868 .......... .......... .......... .......... .......... .......... 373 ACTAATTATT AAGCTTCTTA ACTTCAACAA GATAAAAGTA ATTATTTTGA AATAAAAGAT 59808 .......... .......... .......... .......... .......... .......... 373 CAACTATACC AATCAAATCA CAAATTATTT TAGGGAAATA AAACACAGAC TAAAACACAA 59748 .......... .......... .......... .......... .......... .......... 373 TTTTTGGTAA AACAAATTTT CCTAATCTTT ATTAAAAGTA GCAAGTATAT GAATCTAATA 59688 .......... .......... .......... .......... .......... .......... 373 TATATTGAGA TGTATTTTAT AGGGAAATGG CAAAATGGCC TTGAAAATGA TTTCAAAAGT 59628 .......... .......... .......... .......... .......... .......... 373 ATTTTTTTAT TTTCGAAAAC AATTATTTCA AATTGTTTGA AATTGAAGAA GCTTGAAAAT 59568 .......... .......... .......... .......... .......... .......... 373 TAATTAAATT GTGGAGGATC AGAATTGAGT CTCAACAGTA GATACACAAA TCCTTGACCC 59508 .......... .......... .......... .......... .......... .......... 373 CAATAATTAT TTAATCTGCT GTTATCAGTT CATTGCATCT GGAAGCCGAA AAATTGGTAG 59448 || |||||||||| |||||||||| |||||||||| .......... .......... ........TT CATTGCATCT GGAAGCCGAA AAATTGGTAG 405 TAACCGATGC AGACCTTCGT TACTTAGATG GATTAGTTGA AGAGAAAGAT GGAGGACCTG 59388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACCGATGC AGACCTTCGT TACTTAGATG GATTAGTTGA AGAGAAAGAT GGAGGACCTG 465 CGTGGATTCA GATGATGGAT CGTTCTACAC CAAATATGTC CTATCAGGCT TGGCGTAGAG 59328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATTCA GATGATGGAT CGTTCTACAC CAAATATGTC CTATCAGGCT TGGCGTAGAG 525 ATCCCGAGGT AGCTTTCTCT CCCCTGGCCT TATAGTATGT GTAATGATAG GAGGGATTTA 59268 |||||||| ATCCCGAG.. .......... .......... .......... .......... .......... 533 ATTAGTTTGC ACTTTCCTTT AATTGGATTA CATTTTAATG TCATGCTAGA CGGGACCTCC 59208 | |||||||| | .......... .......... .......... .......... .........A CGGGACCTTC 544 ACAATATC 59200 |||||||| ACAATATC 552 hqPGS_C08HBa0064M21.1-_SGN-E278755+ (61487 61114,59479 59320,59218 59200) ******************************************************************************** EST sequence 119 +strand 495 n (File: SGN-E291516+) 1 TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT TTATTATGGG 61 TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 121 GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 181 GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 241 TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 301 CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAGTTCAT TGCATCTGGA 361 AGCCGAAAAA TTGGTAGTAA CCGATGCAGA CCTTCGTTAC TTAGATGGAT TAGTTGAAGA 421 GAAAGATGGA GGACCTGCGT GGATTCAGAT GATGGATCGT TCTACACCAA ATATGTCCTA 481 TCAGGCTTGG CGTAG Predicted gene structure (within gDNA segment 62058 to 58720): Exon 1 61458 61114 ( 345 n); cDNA 1 345 ( 345 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59330 ( 150 n); cDNA 346 495 ( 150 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E291516+ 1.000 495 1.000 C PGS_C08HBa0064M21.1-_SGN-E291516+ (61458 61114,59479 59330) Alignment (genomic DNA sequence = upper lines): TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT TTATTATGGG 61399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT TTATTATGGG 60 TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 61339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 120 GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 61279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 180 GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 61219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 240 TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 61159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 300 CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAGGTTTC TTCCAAAGTC 61099 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAG..... .......... 345 TCTCTCTTTA ATTTCTCATT TTCTGTATTT CTCCTTTACA TACCCGATTT CTAAAACTAA 61039 .......... .......... .......... .......... .......... .......... 345 CTTTTAAAAA TGCGATCCCA GTTGACTGAT GGATTAAAAA TTTGGCTAAC TTTATTAAAG 60979 .......... .......... .......... .......... .......... .......... 345 AAAATGAATT GTGTTGGTTT TAAAAATCTT TAGAAAAATG AATAGATATT AATTTGTACT 60919 .......... .......... .......... .......... .......... .......... 345 ATCAAGTAAT GAAAAATTAA AAGTTCAAGC GTCTGGAAAT GTTTTTAACT TAATAATAAT 60859 .......... .......... .......... .......... .......... .......... 345 CTATATCCAA GTTAAAGATT TGAACCAAAT GGTTAGCTCA AATTCATTAA CGTGAATTAA 60799 .......... .......... .......... .......... .......... .......... 345 AGCTTTTTAA TAACTATGAA ACAGCTGGTT CTTAAGTTAT TCTACAAGCT TAAGTCTGCC 60739 .......... .......... .......... .......... .......... .......... 345 TTAACTAAAT TGGGCTTTGA AAATTGAAAT ACTTGTCACA AAATAGTGAA AGAAAGGTCA 60679 .......... .......... .......... .......... .......... .......... 345 TTAAAAAATC TCCCGGGAAA TCATCTAAGT TAGATAATAA GTTGAGTAAT CACAGTAAAC 60619 .......... .......... .......... .......... .......... .......... 345 AATGAGTTCC TCTGGGACTG CCGCTACCTG TTTCAGCTGC TGCTGGTTTT TGAGTTTTAA 60559 .......... .......... .......... .......... .......... .......... 345 CCCAATAGTA TTTGCTTCCC TTTAGCGACT TGGTGGAGGT TGACTCGAAG AGAGGAATAT 60499 .......... .......... .......... .......... .......... .......... 345 GCAAGAGTCC AATGGACTCA AATGGAAGAG TGCATGCAAA GAAAACAAAG AAAAAGAATT 60439 .......... .......... .......... .......... .......... .......... 345 AATAACTAAT AAAGAAGGGG CTGATACTAA TTTAACATGT AAACAAACTC AATCAACATT 60379 .......... .......... .......... .......... .......... .......... 345 TGATGATGCA AATTAAGTCT GCCAGCGTAA AGAGGAAAAA AAGGAAACAA GGAGTACAAC 60319 .......... .......... .......... .......... .......... .......... 345 TTCCAATCCT AACACATAAT AGAAGTCAAC ATAATCGCAA TTTTAGTCAG CAAATAAGTG 60259 .......... .......... .......... .......... .......... .......... 345 TGGAAGGCAT AGTTAAAAGC ATTCTTGCAC CAACTTTAAC CAACAAGAGC TATATCATGT 60199 .......... .......... .......... .......... .......... .......... 345 AGGGGTCTGT TGGTTGGAAG CTTCTAGGCG TCCTCGAGTC GTGCTAAGCA CGCGGAGTGT 60139 .......... .......... .......... .......... .......... .......... 345 ACGAATTGAA GGAAAAAAGA GGAAATTGAG GCGGCAAAAT GAGGATTTAG GGCTGGGTCC 60079 .......... .......... .......... .......... .......... .......... 345 ATCTGGTTGA GCATTGTTGG CGTTGTGCTT GTTGTGAGCG AGAAGAAAGA GTGAGGGGTC 60019 .......... .......... .......... .......... .......... .......... 345 TGGGTTGAAT TGGAGTTGGG CCGGGTGTTT CATAATGGGC CAAATGTATG GTCTTAAAAG 59959 .......... .......... .......... .......... .......... .......... 345 GAAGAAAGAA AGGAACAGGT TGTTTGGTTT CTATATTTTA TCAAATTAAA CCGAATTTGA 59899 .......... .......... .......... .......... .......... .......... 345 TAAAACGGGA AGGAGATAAA TCATAAATTT AACTAATTAT TAAGCTTCTT AACTTCAACA 59839 .......... .......... .......... .......... .......... .......... 345 AGATAAAAGT AATTATTTTG AAATAAAAGA TCAACTATAC CAATCAAATC ACAAATTATT 59779 .......... .......... .......... .......... .......... .......... 345 TTAGGGAAAT AAAACACAGA CTAAAACACA ATTTTTGGTA AAACAAATTT TCCTAATCTT 59719 .......... .......... .......... .......... .......... .......... 345 TATTAAAAGT AGCAAGTATA TGAATCTAAT ATATATTGAG ATGTATTTTA TAGGGAAATG 59659 .......... .......... .......... .......... .......... .......... 345 GCAAAATGGC CTTGAAAATG ATTTCAAAAG TATTTTTTTA TTTTCGAAAA CAATTATTTC 59599 .......... .......... .......... .......... .......... .......... 345 AAATTGTTTG AAATTGAAGA AGCTTGAAAA TTAATTAAAT TGTGGAGGAT CAGAATTGAG 59539 .......... .......... .......... .......... .......... .......... 345 TCTCAACAGT AGATACACAA ATCCTTGACC CCAATAATTA TTTAATCTGC TGTTATCAGT 59479 | .......... .......... .......... .......... .......... .........T 346 TCATTGCATC TGGAAGCCGA AAAATTGGTA GTAACCGATG CAGACCTTCG TTACTTAGAT 59419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTGCATC TGGAAGCCGA AAAATTGGTA GTAACCGATG CAGACCTTCG TTACTTAGAT 406 GGATTAGTTG AAGAGAAAGA TGGAGGACCT GCGTGGATTC AGATGATGGA TCGTTCTACA 59359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTAGTTG AAGAGAAAGA TGGAGGACCT GCGTGGATTC AGATGATGGA TCGTTCTACA 466 CCAAATATGT CCTATCAGGC TTGGCGTAG 59330 |||||||||| |||||||||| ||||||||| CCAAATATGT CCTATCAGGC TTGGCGTAG 495 hqPGS_C08HBa0064M21.1-_SGN-E291516+ (61458 61114,59479 59330) ******************************************************************************** EST sequence 86 +strand 413 n (File: SGN-E201731+) 1 ATTTTACAGA GACCAACTTT TGGGGAGGTA ATATTAGAGC TGGGGATGTT TATGGCACCC 61 ATCTGGATTG CTGTTCTTGT TGGGGTCTTG GTTGGATGGT CATGGAAGCC CAATTGGGCC 121 AATCTTGCCA TTGATTCTGT TCCTACAACA CATGTTCCTT CTCTCCAAAA CTTGTCTTCT 181 GGCTTTTCAA CTCTCAAATT GCAAATTCCC TCTTGGATCA AGGAAACTCA CTCCCCACCC 241 TCCATTTCAT CCTCTACCTC CAGTTCATTG CATCTGGAAG CCGAAAAATT GGTAGTAACC 301 GATGCAGACC TTCGTTACTT AGATGGATTA GTTGAAGAGA AAGATGGAGG ACCTGCGTGG 361 ATTCAGATGA TGGATCGTTC TACACCAAAT ATGTCCTATC AGGCTTGGCG TAG Predicted gene structure (within gDNA segment 62057 to 58720): Exon 1 61376 61114 ( 263 n); cDNA 1 263 ( 263 n); score: 0.996 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59330 ( 150 n); cDNA 264 413 ( 150 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E201731+ 0.998 413 1.000 C PGS_C08HBa0064M21.1-_SGN-E201731+ (61376 61114,59479 59330) Alignment (genomic DNA sequence = upper lines): ATTTTACAAA GACCAACTTT TGGGGAGGTA ATATTAGAGC TGGGGATGTT TATGGCACCC 61317 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTACAGA GACCAACTTT TGGGGAGGTA ATATTAGAGC TGGGGATGTT TATGGCACCC 60 ATCTGGATTG CTGTTCTTGT TGGGGTCTTG GTTGGATGGT CATGGAAGCC CAATTGGGCC 61257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGATTG CTGTTCTTGT TGGGGTCTTG GTTGGATGGT CATGGAAGCC CAATTGGGCC 120 AATCTTGCCA TTGATTCTGT TCCTACAACA CATGTTCCTT CTCTCCAAAA CTTGTCTTCT 61197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTGCCA TTGATTCTGT TCCTACAACA CATGTTCCTT CTCTCCAAAA CTTGTCTTCT 180 GGCTTTTCAA CTCTCAAATT GCAAATTCCC TCTTGGATCA AGGAAACTCA CTCCCCACCC 61137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTTCAA CTCTCAAATT GCAAATTCCC TCTTGGATCA AGGAAACTCA CTCCCCACCC 240 TCCATTTCAT CCTCTACCTC CAGGTTTCTT CCAAAGTCTC TCTCTTTAAT TTCTCATTTT 61077 |||||||||| |||||||||| ||| TCCATTTCAT CCTCTACCTC CAG....... .......... .......... .......... 263 CTGTATTTCT CCTTTACATA CCCGATTTCT AAAACTAACT TTTAAAAATG CGATCCCAGT 61017 .......... .......... .......... .......... .......... .......... 263 TGACTGATGG ATTAAAAATT TGGCTAACTT TATTAAAGAA AATGAATTGT GTTGGTTTTA 60957 .......... .......... .......... .......... .......... .......... 263 AAAATCTTTA GAAAAATGAA TAGATATTAA TTTGTACTAT CAAGTAATGA AAAATTAAAA 60897 .......... .......... .......... .......... .......... .......... 263 GTTCAAGCGT CTGGAAATGT TTTTAACTTA ATAATAATCT ATATCCAAGT TAAAGATTTG 60837 .......... .......... .......... .......... .......... .......... 263 AACCAAATGG TTAGCTCAAA TTCATTAACG TGAATTAAAG CTTTTTAATA ACTATGAAAC 60777 .......... .......... .......... .......... .......... .......... 263 AGCTGGTTCT TAAGTTATTC TACAAGCTTA AGTCTGCCTT AACTAAATTG GGCTTTGAAA 60717 .......... .......... .......... .......... .......... .......... 263 ATTGAAATAC TTGTCACAAA ATAGTGAAAG AAAGGTCATT AAAAAATCTC CCGGGAAATC 60657 .......... .......... .......... .......... .......... .......... 263 ATCTAAGTTA GATAATAAGT TGAGTAATCA CAGTAAACAA TGAGTTCCTC TGGGACTGCC 60597 .......... .......... .......... .......... .......... .......... 263 GCTACCTGTT TCAGCTGCTG CTGGTTTTTG AGTTTTAACC CAATAGTATT TGCTTCCCTT 60537 .......... .......... .......... .......... .......... .......... 263 TAGCGACTTG GTGGAGGTTG ACTCGAAGAG AGGAATATGC AAGAGTCCAA TGGACTCAAA 60477 .......... .......... .......... .......... .......... .......... 263 TGGAAGAGTG CATGCAAAGA AAACAAAGAA AAAGAATTAA TAACTAATAA AGAAGGGGCT 60417 .......... .......... .......... .......... .......... .......... 263 GATACTAATT TAACATGTAA ACAAACTCAA TCAACATTTG ATGATGCAAA TTAAGTCTGC 60357 .......... .......... .......... .......... .......... .......... 263 CAGCGTAAAG AGGAAAAAAA GGAAACAAGG AGTACAACTT CCAATCCTAA CACATAATAG 60297 .......... .......... .......... .......... .......... .......... 263 AAGTCAACAT AATCGCAATT TTAGTCAGCA AATAAGTGTG GAAGGCATAG TTAAAAGCAT 60237 .......... .......... .......... .......... .......... .......... 263 TCTTGCACCA ACTTTAACCA ACAAGAGCTA TATCATGTAG GGGTCTGTTG GTTGGAAGCT 60177 .......... .......... .......... .......... .......... .......... 263 TCTAGGCGTC CTCGAGTCGT GCTAAGCACG CGGAGTGTAC GAATTGAAGG AAAAAAGAGG 60117 .......... .......... .......... .......... .......... .......... 263 AAATTGAGGC GGCAAAATGA GGATTTAGGG CTGGGTCCAT CTGGTTGAGC ATTGTTGGCG 60057 .......... .......... .......... .......... .......... .......... 263 TTGTGCTTGT TGTGAGCGAG AAGAAAGAGT GAGGGGTCTG GGTTGAATTG GAGTTGGGCC 59997 .......... .......... .......... .......... .......... .......... 263 GGGTGTTTCA TAATGGGCCA AATGTATGGT CTTAAAAGGA AGAAAGAAAG GAACAGGTTG 59937 .......... .......... .......... .......... .......... .......... 263 TTTGGTTTCT ATATTTTATC AAATTAAACC GAATTTGATA AAACGGGAAG GAGATAAATC 59877 .......... .......... .......... .......... .......... .......... 263 ATAAATTTAA CTAATTATTA AGCTTCTTAA CTTCAACAAG ATAAAAGTAA TTATTTTGAA 59817 .......... .......... .......... .......... .......... .......... 263 ATAAAAGATC AACTATACCA ATCAAATCAC AAATTATTTT AGGGAAATAA AACACAGACT 59757 .......... .......... .......... .......... .......... .......... 263 AAAACACAAT TTTTGGTAAA ACAAATTTTC CTAATCTTTA TTAAAAGTAG CAAGTATATG 59697 .......... .......... .......... .......... .......... .......... 263 AATCTAATAT ATATTGAGAT GTATTTTATA GGGAAATGGC AAAATGGCCT TGAAAATGAT 59637 .......... .......... .......... .......... .......... .......... 263 TTCAAAAGTA TTTTTTTATT TTCGAAAACA ATTATTTCAA ATTGTTTGAA ATTGAAGAAG 59577 .......... .......... .......... .......... .......... .......... 263 CTTGAAAATT AATTAAATTG TGGAGGATCA GAATTGAGTC TCAACAGTAG ATACACAAAT 59517 .......... .......... .......... .......... .......... .......... 263 CCTTGACCCC AATAATTATT TAATCTGCTG TTATCAGTTC ATTGCATCTG GAAGCCGAAA 59457 ||| |||||||||| |||||||||| .......... .......... .......... .......TTC ATTGCATCTG GAAGCCGAAA 286 AATTGGTAGT AACCGATGCA GACCTTCGTT ACTTAGATGG ATTAGTTGAA GAGAAAGATG 59397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGTAGT AACCGATGCA GACCTTCGTT ACTTAGATGG ATTAGTTGAA GAGAAAGATG 346 GAGGACCTGC GTGGATTCAG ATGATGGATC GTTCTACACC AAATATGTCC TATCAGGCTT 59337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACCTGC GTGGATTCAG ATGATGGATC GTTCTACACC AAATATGTCC TATCAGGCTT 406 GGCGTAG 59330 ||||||| GGCGTAG 413 hqPGS_C08HBa0064M21.1-_SGN-E201731+ (61376 61114,59479 59330) ******************************************************************************** EST sequence 132 +strand 516 n (File: SGN-E287655+) 1 TTTTTTTGAA ACCCTCGACT CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG 61 GGTTGCTTCT TCTTCTTTTT TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA 121 AAGACCAACT TTTGGGGAGG TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT 181 TGCTGTTCTT GTTGGGGTCT TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC 241 CATTGATTCT GTACCTACAA CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTTTTC 301 AACTCTCAAA TTGCAAATTC CCTCTTGGAT CAAGGAAACT CACTCCCCAC ACTCCATTTC 361 ATCCTCTACC TCCAGTTCAT TGCATCTGGA AGCCGAAAAA TTGGTAGTAA CCGATGCAGA 421 CCTTCGTTAC TTAGATGGAT GACTTGAAGA GAAAGATGGA AGACCTGCGT GGATTCAGAT 481 GATGGATCGT TCTACACCAA ATATGTCCTA TCAGGC Predicted gene structure (within gDNA segment 62088 to 58729): Exon 1 61488 61114 ( 375 n); cDNA 1 375 ( 375 n); score: 0.995 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 0.98), Pa: 0.854 (s: 1.00) Exon 2 59479 59339 ( 141 n); cDNA 376 516 ( 141 n); score: 0.979 MATCH C08HBa0064M21.1- SGN-E287655+ 0.990 516 1.000 C PGS_C08HBa0064M21.1-_SGN-E287655+ (61488 61114,59479 59339) Alignment (genomic DNA sequence = upper lines): TTTTTTTGAA ACCCTCGACT CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG 61429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTGAA ACCCTCGACT CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG 60 GGTTGCTTCT TCTTCTTTTT TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA 61369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGCTTCT TCTTCTTTTT TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA 120 AAGACCAACT TTTGGGGAGG TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT 61309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACCAACT TTTGGGGAGG TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT 180 TGCTGTTCTT GTTGGGGTCT TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC 61249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTCTT GTTGGGGTCT TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC 240 CATTGATTCT GTTCCTACAA CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTTTTC 61189 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGATTCT GTACCTACAA CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTTTTC 300 AACTCTCAAA TTGCAAATTC CCTCTTGGAT CAAGGAAACT CACTCCCCAC CCTCCATTTC 61129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AACTCTCAAA TTGCAAATTC CCTCTTGGAT CAAGGAAACT CACTCCCCAC ACTCCATTTC 360 ATCCTCTACC TCCAGGTTTC TTCCAAAGTC TCTCTCTTTA ATTTCTCATT TTCTGTATTT 61069 |||||||||| ||||| ATCCTCTACC TCCAG..... .......... .......... .......... .......... 375 CTCCTTTACA TACCCGATTT CTAAAACTAA CTTTTAAAAA TGCGATCCCA GTTGACTGAT 61009 .......... .......... .......... .......... .......... .......... 375 GGATTAAAAA TTTGGCTAAC TTTATTAAAG AAAATGAATT GTGTTGGTTT TAAAAATCTT 60949 .......... .......... .......... .......... .......... .......... 375 TAGAAAAATG AATAGATATT AATTTGTACT ATCAAGTAAT GAAAAATTAA AAGTTCAAGC 60889 .......... .......... .......... .......... .......... .......... 375 GTCTGGAAAT GTTTTTAACT TAATAATAAT CTATATCCAA GTTAAAGATT TGAACCAAAT 60829 .......... .......... .......... .......... .......... .......... 375 GGTTAGCTCA AATTCATTAA CGTGAATTAA AGCTTTTTAA TAACTATGAA ACAGCTGGTT 60769 .......... .......... .......... .......... .......... .......... 375 CTTAAGTTAT TCTACAAGCT TAAGTCTGCC TTAACTAAAT TGGGCTTTGA AAATTGAAAT 60709 .......... .......... .......... .......... .......... .......... 375 ACTTGTCACA AAATAGTGAA AGAAAGGTCA TTAAAAAATC TCCCGGGAAA TCATCTAAGT 60649 .......... .......... .......... .......... .......... .......... 375 TAGATAATAA GTTGAGTAAT CACAGTAAAC AATGAGTTCC TCTGGGACTG CCGCTACCTG 60589 .......... .......... .......... .......... .......... .......... 375 TTTCAGCTGC TGCTGGTTTT TGAGTTTTAA CCCAATAGTA TTTGCTTCCC TTTAGCGACT 60529 .......... .......... .......... .......... .......... .......... 375 TGGTGGAGGT TGACTCGAAG AGAGGAATAT GCAAGAGTCC AATGGACTCA AATGGAAGAG 60469 .......... .......... .......... .......... .......... .......... 375 TGCATGCAAA GAAAACAAAG AAAAAGAATT AATAACTAAT AAAGAAGGGG CTGATACTAA 60409 .......... .......... .......... .......... .......... .......... 375 TTTAACATGT AAACAAACTC AATCAACATT TGATGATGCA AATTAAGTCT GCCAGCGTAA 60349 .......... .......... .......... .......... .......... .......... 375 AGAGGAAAAA AAGGAAACAA GGAGTACAAC TTCCAATCCT AACACATAAT AGAAGTCAAC 60289 .......... .......... .......... .......... .......... .......... 375 ATAATCGCAA TTTTAGTCAG CAAATAAGTG TGGAAGGCAT AGTTAAAAGC ATTCTTGCAC 60229 .......... .......... .......... .......... .......... .......... 375 CAACTTTAAC CAACAAGAGC TATATCATGT AGGGGTCTGT TGGTTGGAAG CTTCTAGGCG 60169 .......... .......... .......... .......... .......... .......... 375 TCCTCGAGTC GTGCTAAGCA CGCGGAGTGT ACGAATTGAA GGAAAAAAGA GGAAATTGAG 60109 .......... .......... .......... .......... .......... .......... 375 GCGGCAAAAT GAGGATTTAG GGCTGGGTCC ATCTGGTTGA GCATTGTTGG CGTTGTGCTT 60049 .......... .......... .......... .......... .......... .......... 375 GTTGTGAGCG AGAAGAAAGA GTGAGGGGTC TGGGTTGAAT TGGAGTTGGG CCGGGTGTTT 59989 .......... .......... .......... .......... .......... .......... 375 CATAATGGGC CAAATGTATG GTCTTAAAAG GAAGAAAGAA AGGAACAGGT TGTTTGGTTT 59929 .......... .......... .......... .......... .......... .......... 375 CTATATTTTA TCAAATTAAA CCGAATTTGA TAAAACGGGA AGGAGATAAA TCATAAATTT 59869 .......... .......... .......... .......... .......... .......... 375 AACTAATTAT TAAGCTTCTT AACTTCAACA AGATAAAAGT AATTATTTTG AAATAAAAGA 59809 .......... .......... .......... .......... .......... .......... 375 TCAACTATAC CAATCAAATC ACAAATTATT TTAGGGAAAT AAAACACAGA CTAAAACACA 59749 .......... .......... .......... .......... .......... .......... 375 ATTTTTGGTA AAACAAATTT TCCTAATCTT TATTAAAAGT AGCAAGTATA TGAATCTAAT 59689 .......... .......... .......... .......... .......... .......... 375 ATATATTGAG ATGTATTTTA TAGGGAAATG GCAAAATGGC CTTGAAAATG ATTTCAAAAG 59629 .......... .......... .......... .......... .......... .......... 375 TATTTTTTTA TTTTCGAAAA CAATTATTTC AAATTGTTTG AAATTGAAGA AGCTTGAAAA 59569 .......... .......... .......... .......... .......... .......... 375 TTAATTAAAT TGTGGAGGAT CAGAATTGAG TCTCAACAGT AGATACACAA ATCCTTGACC 59509 .......... .......... .......... .......... .......... .......... 375 CCAATAATTA TTTAATCTGC TGTTATCAGT TCATTGCATC TGGAAGCCGA AAAATTGGTA 59449 | |||||||||| |||||||||| |||||||||| .......... .......... .........T TCATTGCATC TGGAAGCCGA AAAATTGGTA 406 GTAACCGATG CAGACCTTCG TTACTTAGAT GGATTAGTTG AAGAGAAAGA TGGAGGACCT 59389 |||||||||| |||||||||| |||||||||| |||| | ||| |||||||||| |||| ||||| GTAACCGATG CAGACCTTCG TTACTTAGAT GGATGACTTG AAGAGAAAGA TGGAAGACCT 466 GCGTGGATTC AGATGATGGA TCGTTCTACA CCAAATATGT CCTATCAGGC 59339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGATTC AGATGATGGA TCGTTCTACA CCAAATATGT CCTATCAGGC 516 hqPGS_C08HBa0064M21.1-_SGN-E287655+ (61488 61114,59479 59339) ******************************************************************************** EST sequence 129 +strand 420 n (File: SGN-E258278+) 1 TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 61 GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 121 GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 181 TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 241 CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAGTTCAT TGCATCTGGA 301 AGCCGAAAAA TTGGTAGTAA CCGATGCAGA CCTTCGTTAC TTAGATGGAT TAGTTGAAGA 361 GAAAGATGGA GGACCTGCGT GGATTCAGAT GATGGATCGT TCTACACCAA ATATGTCCTA Predicted gene structure (within gDNA segment 61998 to 58735): Exon 1 61398 61114 ( 285 n); cDNA 1 285 ( 285 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59345 ( 135 n); cDNA 286 420 ( 135 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E258278+ 1.000 420 1.000 C PGS_C08HBa0064M21.1-_SGN-E258278+ (61398 61114,59479 59345) Alignment (genomic DNA sequence = upper lines): TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 61339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG TAATATTAGA 60 GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 61279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT TGGTTGGATG 120 GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 61219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA CACATGTTCC 180 TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 61159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AACTCTCAAA TTGCAAATTC CCTCTTGGAT 240 CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAGGTTTC TTCCAAAGTC 61099 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAGGAAACT CACTCCCCAC CCTCCATTTC ATCCTCTACC TCCAG..... .......... 285 TCTCTCTTTA ATTTCTCATT TTCTGTATTT CTCCTTTACA TACCCGATTT CTAAAACTAA 61039 .......... .......... .......... .......... .......... .......... 285 CTTTTAAAAA TGCGATCCCA GTTGACTGAT GGATTAAAAA TTTGGCTAAC TTTATTAAAG 60979 .......... .......... .......... .......... .......... .......... 285 AAAATGAATT GTGTTGGTTT TAAAAATCTT TAGAAAAATG AATAGATATT AATTTGTACT 60919 .......... .......... .......... .......... .......... .......... 285 ATCAAGTAAT GAAAAATTAA AAGTTCAAGC GTCTGGAAAT GTTTTTAACT TAATAATAAT 60859 .......... .......... .......... .......... .......... .......... 285 CTATATCCAA GTTAAAGATT TGAACCAAAT GGTTAGCTCA AATTCATTAA CGTGAATTAA 60799 .......... .......... .......... .......... .......... .......... 285 AGCTTTTTAA TAACTATGAA ACAGCTGGTT CTTAAGTTAT TCTACAAGCT TAAGTCTGCC 60739 .......... .......... .......... .......... .......... .......... 285 TTAACTAAAT TGGGCTTTGA AAATTGAAAT ACTTGTCACA AAATAGTGAA AGAAAGGTCA 60679 .......... .......... .......... .......... .......... .......... 285 TTAAAAAATC TCCCGGGAAA TCATCTAAGT TAGATAATAA GTTGAGTAAT CACAGTAAAC 60619 .......... .......... .......... .......... .......... .......... 285 AATGAGTTCC TCTGGGACTG CCGCTACCTG TTTCAGCTGC TGCTGGTTTT TGAGTTTTAA 60559 .......... .......... .......... .......... .......... .......... 285 CCCAATAGTA TTTGCTTCCC TTTAGCGACT TGGTGGAGGT TGACTCGAAG AGAGGAATAT 60499 .......... .......... .......... .......... .......... .......... 285 GCAAGAGTCC AATGGACTCA AATGGAAGAG TGCATGCAAA GAAAACAAAG AAAAAGAATT 60439 .......... .......... .......... .......... .......... .......... 285 AATAACTAAT AAAGAAGGGG CTGATACTAA TTTAACATGT AAACAAACTC AATCAACATT 60379 .......... .......... .......... .......... .......... .......... 285 TGATGATGCA AATTAAGTCT GCCAGCGTAA AGAGGAAAAA AAGGAAACAA GGAGTACAAC 60319 .......... .......... .......... .......... .......... .......... 285 TTCCAATCCT AACACATAAT AGAAGTCAAC ATAATCGCAA TTTTAGTCAG CAAATAAGTG 60259 .......... .......... .......... .......... .......... .......... 285 TGGAAGGCAT AGTTAAAAGC ATTCTTGCAC CAACTTTAAC CAACAAGAGC TATATCATGT 60199 .......... .......... .......... .......... .......... .......... 285 AGGGGTCTGT TGGTTGGAAG CTTCTAGGCG TCCTCGAGTC GTGCTAAGCA CGCGGAGTGT 60139 .......... .......... .......... .......... .......... .......... 285 ACGAATTGAA GGAAAAAAGA GGAAATTGAG GCGGCAAAAT GAGGATTTAG GGCTGGGTCC 60079 .......... .......... .......... .......... .......... .......... 285 ATCTGGTTGA GCATTGTTGG CGTTGTGCTT GTTGTGAGCG AGAAGAAAGA GTGAGGGGTC 60019 .......... .......... .......... .......... .......... .......... 285 TGGGTTGAAT TGGAGTTGGG CCGGGTGTTT CATAATGGGC CAAATGTATG GTCTTAAAAG 59959 .......... .......... .......... .......... .......... .......... 285 GAAGAAAGAA AGGAACAGGT TGTTTGGTTT CTATATTTTA TCAAATTAAA CCGAATTTGA 59899 .......... .......... .......... .......... .......... .......... 285 TAAAACGGGA AGGAGATAAA TCATAAATTT AACTAATTAT TAAGCTTCTT AACTTCAACA 59839 .......... .......... .......... .......... .......... .......... 285 AGATAAAAGT AATTATTTTG AAATAAAAGA TCAACTATAC CAATCAAATC ACAAATTATT 59779 .......... .......... .......... .......... .......... .......... 285 TTAGGGAAAT AAAACACAGA CTAAAACACA ATTTTTGGTA AAACAAATTT TCCTAATCTT 59719 .......... .......... .......... .......... .......... .......... 285 TATTAAAAGT AGCAAGTATA TGAATCTAAT ATATATTGAG ATGTATTTTA TAGGGAAATG 59659 .......... .......... .......... .......... .......... .......... 285 GCAAAATGGC CTTGAAAATG ATTTCAAAAG TATTTTTTTA TTTTCGAAAA CAATTATTTC 59599 .......... .......... .......... .......... .......... .......... 285 AAATTGTTTG AAATTGAAGA AGCTTGAAAA TTAATTAAAT TGTGGAGGAT CAGAATTGAG 59539 .......... .......... .......... .......... .......... .......... 285 TCTCAACAGT AGATACACAA ATCCTTGACC CCAATAATTA TTTAATCTGC TGTTATCAGT 59479 | .......... .......... .......... .......... .......... .........T 286 TCATTGCATC TGGAAGCCGA AAAATTGGTA GTAACCGATG CAGACCTTCG TTACTTAGAT 59419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTGCATC TGGAAGCCGA AAAATTGGTA GTAACCGATG CAGACCTTCG TTACTTAGAT 346 GGATTAGTTG AAGAGAAAGA TGGAGGACCT GCGTGGATTC AGATGATGGA TCGTTCTACA 59359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTAGTTG AAGAGAAAGA TGGAGGACCT GCGTGGATTC AGATGATGGA TCGTTCTACA 406 CCAAATATGT CCTA 59345 |||||||||| |||| CCAAATATGT CCTA 420 hqPGS_C08HBa0064M21.1-_SGN-E258278+ (61398 61114,59479 59345) ******************************************************************************** EST sequence 93 +strand 489 n (File: SGN-E315915+) 1 TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 61 CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 121 TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 181 GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 241 CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 301 AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 361 TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAGTTC 421 ATTGCATCTG GAAGCCGAAA AATTGGTAGT AACCGATGCA GACCTTCGTT ACTTAGATGG 481 ATTAGTTGA Predicted gene structure (within gDNA segment 62130 to 58798): Exon 1 61530 61114 ( 417 n); cDNA 1 417 ( 417 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59408 ( 72 n); cDNA 418 489 ( 72 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E315915+ 1.000 489 1.000 C PGS_C08HBa0064M21.1-_SGN-E315915+ (61530 61114,59479 59408) Alignment (genomic DNA sequence = upper lines): TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 61471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 60 CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 61411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 120 TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 61351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 180 GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 61291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 240 CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 61231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 300 AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 61171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 360 TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAGGTT 61111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAG... 417 TCTTCCAAAG TCTCTCTCTT TAATTTCTCA TTTTCTGTAT TTCTCCTTTA CATACCCGAT 61051 .......... .......... .......... .......... .......... .......... 417 TTCTAAAACT AACTTTTAAA AATGCGATCC CAGTTGACTG ATGGATTAAA AATTTGGCTA 60991 .......... .......... .......... .......... .......... .......... 417 ACTTTATTAA AGAAAATGAA TTGTGTTGGT TTTAAAAATC TTTAGAAAAA TGAATAGATA 60931 .......... .......... .......... .......... .......... .......... 417 TTAATTTGTA CTATCAAGTA ATGAAAAATT AAAAGTTCAA GCGTCTGGAA ATGTTTTTAA 60871 .......... .......... .......... .......... .......... .......... 417 CTTAATAATA ATCTATATCC AAGTTAAAGA TTTGAACCAA ATGGTTAGCT CAAATTCATT 60811 .......... .......... .......... .......... .......... .......... 417 AACGTGAATT AAAGCTTTTT AATAACTATG AAACAGCTGG TTCTTAAGTT ATTCTACAAG 60751 .......... .......... .......... .......... .......... .......... 417 CTTAAGTCTG CCTTAACTAA ATTGGGCTTT GAAAATTGAA ATACTTGTCA CAAAATAGTG 60691 .......... .......... .......... .......... .......... .......... 417 AAAGAAAGGT CATTAAAAAA TCTCCCGGGA AATCATCTAA GTTAGATAAT AAGTTGAGTA 60631 .......... .......... .......... .......... .......... .......... 417 ATCACAGTAA ACAATGAGTT CCTCTGGGAC TGCCGCTACC TGTTTCAGCT GCTGCTGGTT 60571 .......... .......... .......... .......... .......... .......... 417 TTTGAGTTTT AACCCAATAG TATTTGCTTC CCTTTAGCGA CTTGGTGGAG GTTGACTCGA 60511 .......... .......... .......... .......... .......... .......... 417 AGAGAGGAAT ATGCAAGAGT CCAATGGACT CAAATGGAAG AGTGCATGCA AAGAAAACAA 60451 .......... .......... .......... .......... .......... .......... 417 AGAAAAAGAA TTAATAACTA ATAAAGAAGG GGCTGATACT AATTTAACAT GTAAACAAAC 60391 .......... .......... .......... .......... .......... .......... 417 TCAATCAACA TTTGATGATG CAAATTAAGT CTGCCAGCGT AAAGAGGAAA AAAAGGAAAC 60331 .......... .......... .......... .......... .......... .......... 417 AAGGAGTACA ACTTCCAATC CTAACACATA ATAGAAGTCA ACATAATCGC AATTTTAGTC 60271 .......... .......... .......... .......... .......... .......... 417 AGCAAATAAG TGTGGAAGGC ATAGTTAAAA GCATTCTTGC ACCAACTTTA ACCAACAAGA 60211 .......... .......... .......... .......... .......... .......... 417 GCTATATCAT GTAGGGGTCT GTTGGTTGGA AGCTTCTAGG CGTCCTCGAG TCGTGCTAAG 60151 .......... .......... .......... .......... .......... .......... 417 CACGCGGAGT GTACGAATTG AAGGAAAAAA GAGGAAATTG AGGCGGCAAA ATGAGGATTT 60091 .......... .......... .......... .......... .......... .......... 417 AGGGCTGGGT CCATCTGGTT GAGCATTGTT GGCGTTGTGC TTGTTGTGAG CGAGAAGAAA 60031 .......... .......... .......... .......... .......... .......... 417 GAGTGAGGGG TCTGGGTTGA ATTGGAGTTG GGCCGGGTGT TTCATAATGG GCCAAATGTA 59971 .......... .......... .......... .......... .......... .......... 417 TGGTCTTAAA AGGAAGAAAG AAAGGAACAG GTTGTTTGGT TTCTATATTT TATCAAATTA 59911 .......... .......... .......... .......... .......... .......... 417 AACCGAATTT GATAAAACGG GAAGGAGATA AATCATAAAT TTAACTAATT ATTAAGCTTC 59851 .......... .......... .......... .......... .......... .......... 417 TTAACTTCAA CAAGATAAAA GTAATTATTT TGAAATAAAA GATCAACTAT ACCAATCAAA 59791 .......... .......... .......... .......... .......... .......... 417 TCACAAATTA TTTTAGGGAA ATAAAACACA GACTAAAACA CAATTTTTGG TAAAACAAAT 59731 .......... .......... .......... .......... .......... .......... 417 TTTCCTAATC TTTATTAAAA GTAGCAAGTA TATGAATCTA ATATATATTG AGATGTATTT 59671 .......... .......... .......... .......... .......... .......... 417 TATAGGGAAA TGGCAAAATG GCCTTGAAAA TGATTTCAAA AGTATTTTTT TATTTTCGAA 59611 .......... .......... .......... .......... .......... .......... 417 AACAATTATT TCAAATTGTT TGAAATTGAA GAAGCTTGAA AATTAATTAA ATTGTGGAGG 59551 .......... .......... .......... .......... .......... .......... 417 ATCAGAATTG AGTCTCAACA GTAGATACAC AAATCCTTGA CCCCAATAAT TATTTAATCT 59491 .......... .......... .......... .......... .......... .......... 417 GCTGTTATCA GTTCATTGCA TCTGGAAGCC GAAAAATTGG TAGTAACCGA TGCAGACCTT 59431 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TTCATTGCA TCTGGAAGCC GAAAAATTGG TAGTAACCGA TGCAGACCTT 466 CGTTACTTAG ATGGATTAGT TGA 59408 |||||||||| |||||||||| ||| CGTTACTTAG ATGGATTAGT TGA 489 hqPGS_C08HBa0064M21.1-_SGN-E315915+ (61530 61114,59479 59408) ******************************************************************************** EST sequence 123 +strand 673 n (File: SGN-E334325+) 1 AAGCACTTGG TCGAACATAA AAACTAAAAT CCTGAGGAGC AAAAATGAAA GAGGGCCTAC 61 CAGCAATCGG CTAACACGTT TCTCTACCTC TACATCCTTA TCCTCTTTTC CCTAAATCGA 121 TTCCTTTCCT TTTTTTTTTT TTTTTAGTAA AATTTTACTC TTTCTTTCCT GCTATCTATC 181 TATCTATCTT TAGGGTTGTC TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT 241 CTTTTTTTTG AAACCCTCGA CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG 301 GGGGTTGCTT CTTCTTCTTT TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA 361 CAAAGACCAA CTTTTGGGGA GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG 421 ATTGCTGTTC TTGTTGGGGT CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT 481 GCCATTGATT CTGTTCCTAC AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT 541 TCAACTCTCA AATTGCAAAT TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT 601 TCATCCTCTA CCTCCAGTTC ATTGCATCTG GAAAGCGAAA ATTGGTAGTA ACCGATGCAG 661 ACCTTCGTTA CTT Predicted gene structure (within gDNA segment 62328 to 58813): Exon 1 61728 61114 ( 615 n); cDNA 1 617 ( 617 n); score: 0.992 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 0.94) Exon 2 59479 59423 ( 57 n); cDNA 618 673 ( 56 n); score: 0.947 MATCH C08HBa0064M21.1- SGN-E334325+ 0.988 672 0.999 C PGS_C08HBa0064M21.1-_SGN-E334325+ (61728 61114,59479 59423) Alignment (genomic DNA sequence = upper lines): AAGCACTTGG TCGAACATAA AAACTAAAAT CCTGAGGAGC AAAAATGAAA GAGGGCCTAC 61669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCACTTGG TCGAACATAA AAACTAAAAT CCTGAGGAGC AAAAATGAAA GAGGGCCTAC 60 CAGCAATCGG CTAACACGTT TCTCTACCTC TACATCCTTA TCCTCTTTTC CCTAAATCGA 61609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATCGG CTAACACGTT TCTCTACCTC TACATCCTTA TCCTCTTTTC CCTAAATCGA 120 TTCCTTTCC- -TTTTTTTTT TTTTTAGTAA AATTTTACTC TTTCTTTCCT GCTATCTATC 61551 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTTCCT TTTTTTTTTT TTTTTAGTAA AATTTTACTC TTTCTTTCCT GCTATCTATC 180 TATCTATCTT TAGGGTTGTC TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT 61491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTATCTT TAGGGTTGTC TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT 240 CTTTTTTTTG AAACCCTCGA CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG 61431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTTTG AAACCCTCGA CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG 300 GGGGTTGCTT CTTCTTCTTT TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA 61371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTGCTT CTTCTTCTTT TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA 360 CAAAGACCAA CTTTTGGGGA GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG 61311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACCAA CTTTTGGGGA GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG 420 ATTGCTGTTC TTGTTGGGGT CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT 61251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGTTC TTGTTGGGGT CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT 480 GCCATTGATT CTGTTCCTAC AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT 61191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTGATT CTGTTCCTAC AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT 540 TCAACTCTCA AATTGCAAAT TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT 61131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTCTCA AATTGCAAAT TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT 600 TCATCCTCTA CCTCCAGGTT TCTTCCAAAG TCTCTCTCTT TAATTTCTCA TTTTCTGTAT 61071 |||||||||| ||||||| TCATCCTCTA CCTCCAG... .......... .......... .......... .......... 617 TTCTCCTTTA CATACCCGAT TTCTAAAACT AACTTTTAAA AATGCGATCC CAGTTGACTG 61011 .......... .......... .......... .......... .......... .......... 617 ATGGATTAAA AATTTGGCTA ACTTTATTAA AGAAAATGAA TTGTGTTGGT TTTAAAAATC 60951 .......... .......... .......... .......... .......... .......... 617 TTTAGAAAAA TGAATAGATA TTAATTTGTA CTATCAAGTA ATGAAAAATT AAAAGTTCAA 60891 .......... .......... .......... .......... .......... .......... 617 GCGTCTGGAA ATGTTTTTAA CTTAATAATA ATCTATATCC AAGTTAAAGA TTTGAACCAA 60831 .......... .......... .......... .......... .......... .......... 617 ATGGTTAGCT CAAATTCATT AACGTGAATT AAAGCTTTTT AATAACTATG AAACAGCTGG 60771 .......... .......... .......... .......... .......... .......... 617 TTCTTAAGTT ATTCTACAAG CTTAAGTCTG CCTTAACTAA ATTGGGCTTT GAAAATTGAA 60711 .......... .......... .......... .......... .......... .......... 617 ATACTTGTCA CAAAATAGTG AAAGAAAGGT CATTAAAAAA TCTCCCGGGA AATCATCTAA 60651 .......... .......... .......... .......... .......... .......... 617 GTTAGATAAT AAGTTGAGTA ATCACAGTAA ACAATGAGTT CCTCTGGGAC TGCCGCTACC 60591 .......... .......... .......... .......... .......... .......... 617 TGTTTCAGCT GCTGCTGGTT TTTGAGTTTT AACCCAATAG TATTTGCTTC CCTTTAGCGA 60531 .......... .......... .......... .......... .......... .......... 617 CTTGGTGGAG GTTGACTCGA AGAGAGGAAT ATGCAAGAGT CCAATGGACT CAAATGGAAG 60471 .......... .......... .......... .......... .......... .......... 617 AGTGCATGCA AAGAAAACAA AGAAAAAGAA TTAATAACTA ATAAAGAAGG GGCTGATACT 60411 .......... .......... .......... .......... .......... .......... 617 AATTTAACAT GTAAACAAAC TCAATCAACA TTTGATGATG CAAATTAAGT CTGCCAGCGT 60351 .......... .......... .......... .......... .......... .......... 617 AAAGAGGAAA AAAAGGAAAC AAGGAGTACA ACTTCCAATC CTAACACATA ATAGAAGTCA 60291 .......... .......... .......... .......... .......... .......... 617 ACATAATCGC AATTTTAGTC AGCAAATAAG TGTGGAAGGC ATAGTTAAAA GCATTCTTGC 60231 .......... .......... .......... .......... .......... .......... 617 ACCAACTTTA ACCAACAAGA GCTATATCAT GTAGGGGTCT GTTGGTTGGA AGCTTCTAGG 60171 .......... .......... .......... .......... .......... .......... 617 CGTCCTCGAG TCGTGCTAAG CACGCGGAGT GTACGAATTG AAGGAAAAAA GAGGAAATTG 60111 .......... .......... .......... .......... .......... .......... 617 AGGCGGCAAA ATGAGGATTT AGGGCTGGGT CCATCTGGTT GAGCATTGTT GGCGTTGTGC 60051 .......... .......... .......... .......... .......... .......... 617 TTGTTGTGAG CGAGAAGAAA GAGTGAGGGG TCTGGGTTGA ATTGGAGTTG GGCCGGGTGT 59991 .......... .......... .......... .......... .......... .......... 617 TTCATAATGG GCCAAATGTA TGGTCTTAAA AGGAAGAAAG AAAGGAACAG GTTGTTTGGT 59931 .......... .......... .......... .......... .......... .......... 617 TTCTATATTT TATCAAATTA AACCGAATTT GATAAAACGG GAAGGAGATA AATCATAAAT 59871 .......... .......... .......... .......... .......... .......... 617 TTAACTAATT ATTAAGCTTC TTAACTTCAA CAAGATAAAA GTAATTATTT TGAAATAAAA 59811 .......... .......... .......... .......... .......... .......... 617 GATCAACTAT ACCAATCAAA TCACAAATTA TTTTAGGGAA ATAAAACACA GACTAAAACA 59751 .......... .......... .......... .......... .......... .......... 617 CAATTTTTGG TAAAACAAAT TTTCCTAATC TTTATTAAAA GTAGCAAGTA TATGAATCTA 59691 .......... .......... .......... .......... .......... .......... 617 ATATATATTG AGATGTATTT TATAGGGAAA TGGCAAAATG GCCTTGAAAA TGATTTCAAA 59631 .......... .......... .......... .......... .......... .......... 617 AGTATTTTTT TATTTTCGAA AACAATTATT TCAAATTGTT TGAAATTGAA GAAGCTTGAA 59571 .......... .......... .......... .......... .......... .......... 617 AATTAATTAA ATTGTGGAGG ATCAGAATTG AGTCTCAACA GTAGATACAC AAATCCTTGA 59511 .......... .......... .......... .......... .......... .......... 617 CCCCAATAAT TATTTAATCT GCTGTTATCA GTTCATTGCA TCTGGAAGCC GAAAAATTGG 59451 ||||||||| ||||||| | | |||||||| .......... .......... .......... .TTCATTGCA TCTGGAAAGC G-AAAATTGG 645 TAGTAACCGA TGCAGACCTT CGTTACTT 59423 |||||||||| |||||||||| |||||||| TAGTAACCGA TGCAGACCTT CGTTACTT 673 hqPGS_C08HBa0064M21.1-_SGN-E334325+ (61728 61114,59479 59423) ******************************************************************************** EST sequence 97 +strand 458 n (File: SGN-E303253+) 1 TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 61 CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 121 TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 181 GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 241 CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 301 AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 361 TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAGTTC 421 ATTGCATCTG GAAGCCGAAA AATTGGTAGT AACCGATG Predicted gene structure (within gDNA segment 62130 to 58829): Exon 1 61530 61114 ( 417 n); cDNA 1 417 ( 417 n); score: 1.000 Intron 1 61113 59480 (1634 n); Pd: 1.000 (s: 1.00), Pa: 0.854 (s: 1.00) Exon 2 59479 59439 ( 41 n); cDNA 418 458 ( 41 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E303253+ 1.000 458 1.000 C PGS_C08HBa0064M21.1-_SGN-E303253+ (61530 61114,59479 59439) Alignment (genomic DNA sequence = upper lines): TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 61471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTTATC TTTATCTTTC TCTATCTTCT TCTTCTTCTT CTTTTTTTTG AAACCCTCGA 60 CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 61411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTCGCCG TGTTCAAAGT TTATATTTAC GATTGAATCG GGGGTTGCTT CTTCTTCTTT 120 TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 61351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTATG GGTTTGGTAG CGGCTTTGCT TGAGATTTTA CAAAGACCAA CTTTTGGGGA 180 GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 61291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATATTA GAGCTGGGGA TGTTTATGGC ACCCATCTGG ATTGCTGTTC TTGTTGGGGT 240 CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 61231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGTTGGA TGGTCATGGA AGCCCAATTG GGCCAATCTT GCCATTGATT CTGTTCCTAC 300 AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 61171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACATGTT CCTTCTCTCC AAAACTTGTC TTCTGGCTTT TCAACTCTCA AATTGCAAAT 360 TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAGGTT 61111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCCCTCTTGG ATCAAGGAAA CTCACTCCCC ACCCTCCATT TCATCCTCTA CCTCCAG... 417 TCTTCCAAAG TCTCTCTCTT TAATTTCTCA TTTTCTGTAT TTCTCCTTTA CATACCCGAT 61051 .......... .......... .......... .......... .......... .......... 417 TTCTAAAACT AACTTTTAAA AATGCGATCC CAGTTGACTG ATGGATTAAA AATTTGGCTA 60991 .......... .......... .......... .......... .......... .......... 417 ACTTTATTAA AGAAAATGAA TTGTGTTGGT TTTAAAAATC TTTAGAAAAA TGAATAGATA 60931 .......... .......... .......... .......... .......... .......... 417 TTAATTTGTA CTATCAAGTA ATGAAAAATT AAAAGTTCAA GCGTCTGGAA ATGTTTTTAA 60871 .......... .......... .......... .......... .......... .......... 417 CTTAATAATA ATCTATATCC AAGTTAAAGA TTTGAACCAA ATGGTTAGCT CAAATTCATT 60811 .......... .......... .......... .......... .......... .......... 417 AACGTGAATT AAAGCTTTTT AATAACTATG AAACAGCTGG TTCTTAAGTT ATTCTACAAG 60751 .......... .......... .......... .......... .......... .......... 417 CTTAAGTCTG CCTTAACTAA ATTGGGCTTT GAAAATTGAA ATACTTGTCA CAAAATAGTG 60691 .......... .......... .......... .......... .......... .......... 417 AAAGAAAGGT CATTAAAAAA TCTCCCGGGA AATCATCTAA GTTAGATAAT AAGTTGAGTA 60631 .......... .......... .......... .......... .......... .......... 417 ATCACAGTAA ACAATGAGTT CCTCTGGGAC TGCCGCTACC TGTTTCAGCT GCTGCTGGTT 60571 .......... .......... .......... .......... .......... .......... 417 TTTGAGTTTT AACCCAATAG TATTTGCTTC CCTTTAGCGA CTTGGTGGAG GTTGACTCGA 60511 .......... .......... .......... .......... .......... .......... 417 AGAGAGGAAT ATGCAAGAGT CCAATGGACT CAAATGGAAG AGTGCATGCA AAGAAAACAA 60451 .......... .......... .......... .......... .......... .......... 417 AGAAAAAGAA TTAATAACTA ATAAAGAAGG GGCTGATACT AATTTAACAT GTAAACAAAC 60391 .......... .......... .......... .......... .......... .......... 417 TCAATCAACA TTTGATGATG CAAATTAAGT CTGCCAGCGT AAAGAGGAAA AAAAGGAAAC 60331 .......... .......... .......... .......... .......... .......... 417 AAGGAGTACA ACTTCCAATC CTAACACATA ATAGAAGTCA ACATAATCGC AATTTTAGTC 60271 .......... .......... .......... .......... .......... .......... 417 AGCAAATAAG TGTGGAAGGC ATAGTTAAAA GCATTCTTGC ACCAACTTTA ACCAACAAGA 60211 .......... .......... .......... .......... .......... .......... 417 GCTATATCAT GTAGGGGTCT GTTGGTTGGA AGCTTCTAGG CGTCCTCGAG TCGTGCTAAG 60151 .......... .......... .......... .......... .......... .......... 417 CACGCGGAGT GTACGAATTG AAGGAAAAAA GAGGAAATTG AGGCGGCAAA ATGAGGATTT 60091 .......... .......... .......... .......... .......... .......... 417 AGGGCTGGGT CCATCTGGTT GAGCATTGTT GGCGTTGTGC TTGTTGTGAG CGAGAAGAAA 60031 .......... .......... .......... .......... .......... .......... 417 GAGTGAGGGG TCTGGGTTGA ATTGGAGTTG GGCCGGGTGT TTCATAATGG GCCAAATGTA 59971 .......... .......... .......... .......... .......... .......... 417 TGGTCTTAAA AGGAAGAAAG AAAGGAACAG GTTGTTTGGT TTCTATATTT TATCAAATTA 59911 .......... .......... .......... .......... .......... .......... 417 AACCGAATTT GATAAAACGG GAAGGAGATA AATCATAAAT TTAACTAATT ATTAAGCTTC 59851 .......... .......... .......... .......... .......... .......... 417 TTAACTTCAA CAAGATAAAA GTAATTATTT TGAAATAAAA GATCAACTAT ACCAATCAAA 59791 .......... .......... .......... .......... .......... .......... 417 TCACAAATTA TTTTAGGGAA ATAAAACACA GACTAAAACA CAATTTTTGG TAAAACAAAT 59731 .......... .......... .......... .......... .......... .......... 417 TTTCCTAATC TTTATTAAAA GTAGCAAGTA TATGAATCTA ATATATATTG AGATGTATTT 59671 .......... .......... .......... .......... .......... .......... 417 TATAGGGAAA TGGCAAAATG GCCTTGAAAA TGATTTCAAA AGTATTTTTT TATTTTCGAA 59611 .......... .......... .......... .......... .......... .......... 417 AACAATTATT TCAAATTGTT TGAAATTGAA GAAGCTTGAA AATTAATTAA ATTGTGGAGG 59551 .......... .......... .......... .......... .......... .......... 417 ATCAGAATTG AGTCTCAACA GTAGATACAC AAATCCTTGA CCCCAATAAT TATTTAATCT 59491 .......... .......... .......... .......... .......... .......... 417 GCTGTTATCA GTTCATTGCA TCTGGAAGCC GAAAAATTGG TAGTAACCGA TG 59439 ||||||||| |||||||||| |||||||||| |||||||||| || .......... .TTCATTGCA TCTGGAAGCC GAAAAATTGG TAGTAACCGA TG 458 hqPGS_C08HBa0064M21.1-_SGN-E303253+ (61530 61114,59479 59439) ******************************************************************************** EST sequence 113 +strand 563 n (File: SGN-E332070+) 1 TTGGATGGTC ATGGAAGCCC AATTGGGCCA ATCTTGCCAT TGATTCTGTT CCTACAACAC 61 ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG GCTTTTCAAC TCTCAAATTG CAAATTCCCT 121 CTTGGATCAA GGAAACTCAC TCCCCACCCT CCATTTCATC CTCTACCTCC AGGTTTCTTC 181 CAAAGTCTCT CTCTTTAATT TCTCATTTTC TGTATTTCTC TTTTACATAC CCGATTTCTA 241 AAACTAACTT TTAAAAATGC GATCCCAGTT GACTGATGGA TTAAAAATTT GGCTAACTTT 301 ATTAAAGAAA ATGAATTGTG TTGGTTTTAA AAATCTTTAG AAAAATGAAT AGATATTAAT 361 TTGTACTATC AAGTAATGAA AAATTAAAAG TTCAAGCGTC TGGAAATGTT TTTAACTTAA 421 TAATAATCTA TATCCAAGTT AAGGATTTGA ACCAAATGGT TAGCTCAAAT TCATTAACGT 481 GAATTAAAGC TTTTTAATAC TATGAAACAG CTGGTTCTTA AGTTATTCTA CAAGCTTAAG 541 TCTGCCTTAA CTAAATTGGG CTT Predicted gene structure (within gDNA segment 61885 to 60112): Exon 1 61285 60722 ( 564 n); cDNA 1 563 ( 563 n); score: 0.995 MATCH C08HBa0064M21.1- SGN-E332070+ 0.995 564 1.002 C PGS_C08HBa0064M21.1-_SGN-E332070+ (61285 60722) Alignment (genomic DNA sequence = upper lines): TTGGATGGTC ATGGAAGCCC AATTGGGCCA ATCTTGCCAT TGATTCTGTT CCTACAACAC 61226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATGGTC ATGGAAGCCC AATTGGGCCA ATCTTGCCAT TGATTCTGTT CCTACAACAC 60 ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG GCTTTTCAAC TCTCAAATTG CAAATTCCCT 61166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCTTC TCTCCAAAAC TTGTCTTCTG GCTTTTCAAC TCTCAAATTG CAAATTCCCT 120 CTTGGATCAA GGAAACTCAC TCCCCACCCT CCATTTCATC CTCTACCTCC AGGTTTCTTC 61106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGATCAA GGAAACTCAC TCCCCACCCT CCATTTCATC CTCTACCTCC AGGTTTCTTC 180 CAAAGTCTCT CTCTTTAATT TCTCATTTTC TGTATTTCTC CTTTACATAC CCGATTTCTA 61046 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAAAGTCTCT CTCTTTAATT TCTCATTTTC TGTATTTCTC TTTTACATAC CCGATTTCTA 240 AAACTAACTT TTAAAAATGC GATCCCAGTT GACTGATGGA TTAAAAATTT GGCTAACTTT 60986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTAACTT TTAAAAATGC GATCCCAGTT GACTGATGGA TTAAAAATTT GGCTAACTTT 300 ATTAAAGAAA ATGAATTGTG TTGGTTTTAA AAATCTTTAG AAAAATGAAT AGATATTAAT 60926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAGAAA ATGAATTGTG TTGGTTTTAA AAATCTTTAG AAAAATGAAT AGATATTAAT 360 TTGTACTATC AAGTAATGAA AAATTAAAAG TTCAAGCGTC TGGAAATGTT TTTAACTTAA 60866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTACTATC AAGTAATGAA AAATTAAAAG TTCAAGCGTC TGGAAATGTT TTTAACTTAA 420 TAATAATCTA TATCCAAGTT AAAGATTTGA ACCAAATGGT TAGCTCAAAT TCATTAACGT 60806 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TAATAATCTA TATCCAAGTT AAGGATTTGA ACCAAATGGT TAGCTCAAAT TCATTAACGT 480 GAATTAAAGC TTTTTAATAA CTATGAAACA GCTGGTTCTT AAGTTATTCT ACAAGCTTAA 60746 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GAATTAAAGC TTTTTAAT-A CTATGAAACA GCTGGTTCTT AAGTTATTCT ACAAGCTTAA 539 GTCTGCCTTA ACTAAATTGG GCTT 60722 |||||||||| |||||||||| |||| GTCTGCCTTA ACTAAATTGG GCTT 563 hqPGS_C08HBa0064M21.1-_SGN-E332070+ (61285 60722) ******************************************************************************** EST sequence 115 +strand 275 n (File: SGN-E274700+) 1 TTACAAAGAC CATCTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 61 TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 121 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GACTTCTGGC 181 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 241 ATTTCATCCT CTACCTACAG TTCATTGCAT CTGGA Predicted gene structure (within gDNA segment 62090 to 60318): Exon 1 61373 61114 ( 260 n); cDNA 1 260 ( 260 n); score: 0.988 MATCH C08HBa0064M21.1- SGN-E274700+ 0.988 260 0.945 C PGS_C08HBa0064M21.1-_SGN-E274700+ (61373 61114) Alignment (genomic DNA sequence = upper lines): TTACAAAGAC CAACTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 61314 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAAGAC CATCTTTTGG GGAGGTAATA TTAGAGCTGG GGATGTTTAT GGCACCCATC 60 TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 61254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTGCTG TTCTTGTTGG GGTCTTGGTT GGATGGTCAT GGAAGCCCAA TTGGGCCAAT 120 CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GTCTTCTGGC 61194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CTTGCCATTG ATTCTGTTCC TACAACACAT GTTCCTTCTC TCCAAAACTT GACTTCTGGC 180 TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 61134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAACTC TCAAATTGCA AATTCCCTCT TGGATCAAGG AAACTCACTC CCCACCCTCC 240 ATTTCATCCT CTACCTCCAG 61114 |||||||||| |||||| ||| ATTTCATCCT CTACCTACAG 260 hqPGS_C08HBa0064M21.1-_SGN-E274700+ (61373 61114) ******************************************************************************** EST sequence 110 +strand 257 n (File: SGN-E329479+) 1 CTTTGCTTGA GATTTTACAA AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT 61 TTATGGCACC CATCTGGATT GCTGTTCTTG TTGGGGTCTT GGTTGGATGG TCATGGAAGC 121 CCAATTGGGC CAATCTTGCC ATTGATTCTG TTCCTACAAC ACATGTTCCT TCTCTTCAAA 181 ACTTGTCTTC TGGCTTTTCA ACTCTCAAAT TGCAAATTCC CTCTTGGATC AAGGAAACTC 241 ACTCCCCACC CTCCATT Predicted gene structure (within gDNA segment 61987 to 60521): Exon 1 61387 61131 ( 257 n); cDNA 1 257 ( 257 n); score: 0.996 MATCH C08HBa0064M21.1- SGN-E329479+ 0.996 257 1.000 C PGS_C08HBa0064M21.1-_SGN-E329479+ (61387 61131) Alignment (genomic DNA sequence = upper lines): CTTTGCTTGA GATTTTACAA AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT 61328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGCTTGA GATTTTACAA AGACCAACTT TTGGGGAGGT AATATTAGAG CTGGGGATGT 60 TTATGGCACC CATCTGGATT GCTGTTCTTG TTGGGGTCTT GGTTGGATGG TCATGGAAGC 61268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGGCACC CATCTGGATT GCTGTTCTTG TTGGGGTCTT GGTTGGATGG TCATGGAAGC 120 CCAATTGGGC CAATCTTGCC ATTGATTCTG TTCCTACAAC ACATGTTCCT TCTCTCCAAA 61208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CCAATTGGGC CAATCTTGCC ATTGATTCTG TTCCTACAAC ACATGTTCCT TCTCTTCAAA 180 ACTTGTCTTC TGGCTTTTCA ACTCTCAAAT TGCAAATTCC CTCTTGGATC AAGGAAACTC 61148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGTCTTC TGGCTTTTCA ACTCTCAAAT TGCAAATTCC CTCTTGGATC AAGGAAACTC 240 ACTCCCCACC CTCCATT 61131 |||||||||| ||||||| ACTCCCCACC CTCCATT 257 hqPGS_C08HBa0064M21.1-_SGN-E329479+ (61387 61131) ******************************************************************************** EST sequence 89 +strand 338 n (File: SGN-E295351+) 1 CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT 61 TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG 121 TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT 181 TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA 241 CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTGTTC AACATCTCAA ATTGCAAATT 301 CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCAT Predicted gene structure (within gDNA segment 62068 to 60522): Exon 1 61468 61132 ( 337 n); cDNA 1 338 ( 338 n); score: 0.990 MATCH C08HBa0064M21.1- SGN-E295351+ 0.990 337 0.997 C PGS_C08HBa0064M21.1-_SGN-E295351+ (61468 61132) Alignment (genomic DNA sequence = upper lines): CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT 61409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGCCGTG TTCAAAGTTT ATATTTACGA TTGAATCGGG GGTTGCTTCT TCTTCTTTTT 60 TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG 61349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTATGGG TTTGGTAGCG GCTTTGCTTG AGATTTTACA AAGACCAACT TTTGGGGAGG 120 TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT 61289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATTAGA GCTGGGGATG TTTATGGCAC CCATCTGGAT TGCTGTTCTT GTTGGGGTCT 180 TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA 61229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGGATG GTCATGGAAG CCCAATTGGG CCAATCTTGC CATTGATTCT GTTCCTACAA 240 CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTTTTC AAC-TCTCAA ATTGCAAATT 61170 |||||||||| |||||||||| |||||||||| |||||| ||| ||| |||||| |||||||||| CACATGTTCC TTCTCTCCAA AACTTGTCTT CTGGCTGTTC AACATCTCAA ATTGCAAATT 300 CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCAT 61132 |||||||||| |||||||||| |||||||||| |||||||| CCCTCTTGGA TCAAGGAAAC TCACTCCCCA CCCTCCAT 338 hqPGS_C08HBa0064M21.1-_SGN-E295351+ (61468 61132) ******************************************************************************** EST sequence 72 +strand 742 n (File: SGN-E345039+) 1 GAGATAGGAG AGGGTGCCGA GTTTTATCCA CTTCCTCTCT CGTTCGTCTT TCTTCTTCTA 61 TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG AAACTCTGTT 121 CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG GTTCAGTTCA 181 TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC ACTGTCATTT 241 CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AGTCACTGGT ATTATAAAGT 301 TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC TTGGGTTCCA 361 AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT GACAAAGCTG 421 GTTATGTTAT TCCTGTGGAA ATCACCGTCT ATGATGATAG AAGCTTCACT TTTATCTTGA 481 AGACCCCACC TGCTTCTGTT TTGCTGCTCA AGGCTGCAGG AGTGGAAAAG GGCTCGAAGG 541 ACCCACAGAG GGAGAAAGTG GGGAAAATAA CTATTGATCA ATTGAAGGTA ATTGCTCAAG 601 AGAAGTTGCC GGATCTTAAT TGTTCTACTA TTGAATGTGC AATGAGGATA ATAGCTGGCA 661 CTGCAGCAAA TATGGGAATT GACATTGACC CTNCGATTCT TGAACCTAAA AAGAAGAACT 721 TGTGTACTAG TTATGCCTTT TC Predicted gene structure (within gDNA segment 63575 to 67158): Exon 1 64175 64456 ( 282 n); cDNA 1 282 ( 282 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 283 455 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 456 519 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66548 ( 224 n); cDNA 520 742 ( 223 n); score: 0.987 MATCH C08HBa0064M21.1+ SGN-E345039+ 0.996 743 1.001 C PGS_C08HBa0064M21.1+_SGN-E345039+ (64175 64456,64532 64704,64779 64842,66325 66548) Alignment (genomic DNA sequence = upper lines): GAGATAGGAG AGGGTGCCGA GTTTTATCCA CTTCCTCTCT CGTTCGTCTT TCTTCTTCTA 64234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATAGGAG AGGGTGCCGA GTTTTATCCA CTTCCTCTCT CGTTCGTCTT TCTTCTTCTA 60 TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG AAACTCTGTT 64294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG AAACTCTGTT 120 CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG GTTCAGTTCA 64354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG GTTCAGTTCA 180 TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC ACTGTCATTT 64414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC ACTGTCATTT 240 CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AGGTATTATT TTCACTTTGC 64474 |||||||||| |||||||||| |||||||||| |||||||||| || CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AG........ .......... 282 TTTTTAAGTT TGGGGTTTGA ATATTTTTAC TGATGGGTTG CATTTTTTTT TGGTCAGTCA 64534 ||| .......... .......... .......... .......... .......... .......TCA 285 CTGGTATTAT AAAGTTAGCT CTCGAGGCAG GGAAGGCAAC CCCAGCTCCA CCCGTGGGGC 64594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTATTAT AAAGTTAGCT CTCGAGGCAG GGAAGGCAAC CCCAGCTCCA CCCGTGGGGC 345 CGGCCTTGGG TTCCAAAGGT GTTAACATCA TGGCATTCTG TAAGGATTAC AATGCCAGAA 64654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCCTTGGG TTCCAAAGGT GTTAACATCA TGGCATTCTG TAAGGATTAC AATGCCAGAA 405 CTGCTGACAA AGCTGGTTAT GTTATTCCTG TGGAAATCAC CGTCTATGAT GTCAGTTCTT 64714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGACAA AGCTGGTTAT GTTATTCCTG TGGAAATCAC CGTCTATGAT .......... 455 CATTTTTATT GCCAATTATT AAAACATGAT TAAAGTCTCA TTGTGCCTCT TCCTTCTCTT 64774 .......... .......... .......... .......... .......... .......... 455 CCAGGATAGA AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT TGCTGCTCAA 64834 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GATAGA AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT TGCTGCTCAA 511 GGCTGCAGGT ATTTAGAATT TTTCAGTAAA AATGTGAAGG TTTAGTTTAG AGGCAAGTCA 64894 |||||||| GGCTGCAG.. .......... .......... .......... .......... .......... 519 GGAAAACTAA ATGATTCATT TAGAGTTAGT TACCATTTAG CTTGAATATG AAGGACACAA 64954 .......... .......... .......... .......... .......... .......... 519 GAATGTATTT GATTTACTGA TTGATGTACG ATGCTCAACT TGGTGCTGAA TATATCAAGC 65014 .......... .......... .......... .......... .......... .......... 519 TAGTTTTGGA TGAGTACATC ATATCCTGGC CTATTACTAC CACACTCTTG CTTGTTGTTC 65074 .......... .......... .......... .......... .......... .......... 519 CAACATCAGT CACCACAGTT GTATGAGACA TATGGCCACT TCTCTGCCGG AATTCCATAA 65134 .......... .......... .......... .......... .......... .......... 519 ATATTTGCTT GTAGTTTGAG ATCAAGAAAT TCATAAAATC CTCTTTAGCT CTAGACTTAT 65194 .......... .......... .......... .......... .......... .......... 519 AGAGTACTTA TAAGGACATT AACATTTATG ACAGCAAGGA AGGTGAAGGG TTAAGCACTC 65254 .......... .......... .......... .......... .......... .......... 519 CCCTAAACAA TAGACACCCT TGAAGACTAC CACTTGATAT ACTACCCCAT GATCTTGGCT 65314 .......... .......... .......... .......... .......... .......... 519 TGAATCAGGA ACTAAAACTA GTTTATGCCT GATATTAGTT AACCACCTCA CCTGTGCACT 65374 .......... .......... .......... .......... .......... .......... 519 TTTTAAACAA AGGACGCCTG TGAAGACTAC AACTCGAAGC ACTATCCAAT GATCTTGGCT 65434 .......... .......... .......... .......... .......... .......... 519 TGAATTGGGT ATAAGAACAG GAAACTTTAG AGTCTTGTTT ATGAAAATTT TCCCGCCTTC 65494 .......... .......... .......... .......... .......... .......... 519 CATGATATTT TTCATAGTAG GACGTAGACA TGTAAAATTA CAGAAAAACT AGACTGAAAA 65554 .......... .......... .......... .......... .......... .......... 519 CTCCCTTTTT TTAAATTTTC CATGTTGCTC TGCTAGATGG TTGGACAAAA AGGGAGAACG 65614 .......... .......... .......... .......... .......... .......... 519 AAAAAAAAAG AAATATTGAA ATCCGAATTA GAAAAACAGT TGAGACTCTC TTTCTTTCTG 65674 .......... .......... .......... .......... .......... .......... 519 GGTGGAGAAT GATCATATAT ATAGATGCTC TGGCTGCGGT TTTCTACTCA TAGACTATAG 65734 .......... .......... .......... .......... .......... .......... 519 TTCTATGCTA ATCCAAAATA GGCAGTAGAT TTAAACATTT CGTGTTTGGA ATGGCAAAAT 65794 .......... .......... .......... .......... .......... .......... 519 CATTGGGCAT GCTGTCCTTG CTTCAACAAA CTATAGAACT AAAATGAACT CCTTCGTTAT 65854 .......... .......... .......... .......... .......... .......... 519 TGTATAAGCA CTGTTTTTTG GGTTACAGTT GATTATAATA ACATGAAAGG TAATTTTTGA 65914 .......... .......... .......... .......... .......... .......... 519 AGTAGATAAC AGTGAGTGAA ATAAATTTGC TCAAAAAGTT AGAATATTAG CTTGTTCTAC 65974 .......... .......... .......... .......... .......... .......... 519 TAGATGTTTA TGCATACTGC TGATATCCCC TTTCTTTGGT ATATGGGGTC AAACCCCCTG 66034 .......... .......... .......... .......... .......... .......... 519 TTTTATTCAG GGAAAAATGC CAGCACTGAC TTGGTGCTTG ATCATTTTGA TGAATAAGAT 66094 .......... .......... .......... .......... .......... .......... 519 CTTTGCTTAT CCCATAATAA AAAGTATAAT TTCACAATTT GGAAATCAGG CGTTCAATCA 66154 .......... .......... .......... .......... .......... .......... 519 AAATAATACA CCTTGTAGAT GTTAATGTGA ACTTGTGCTG GAGTTTAGCT TTTTATGGTG 66214 .......... .......... .......... .......... .......... .......... 519 CAGTTACTCT ATCTTTGCTA TAGCCTGGTT GTCATAAAGT TGTGGTGCAT ACAAAAGTTT 66274 .......... .......... .......... .......... .......... .......... 519 GGATAGTTTC CAAAGATGTG AAGATGATTA ACTATTTTAT CACTTTGTAG GAGTGGAAAA 66334 |||||||||| .......... .......... .......... .......... .......... GAGTGGAAAA 529 GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC AATTGAAGGT 66394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC AATTGAAGGT 589 AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG CAATGAGGAT 66454 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATGTG CAATGAGGAT 649 AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC TTGAACCTAA 66514 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTNCGATTC TTGAACCTAA 709 AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTC 66548 |||| ||||| |||||||||| |||||||||| |||| AAAG-AAGAA CTTGTGTACT AGTTATGCCT TTTC 742 hqPGS_C08HBa0064M21.1+_SGN-E345039+ (64175 64456,64532 64704,64779 64842,66325 66548) ******************************************************************************** EST sequence 45 +strand 450 n (File: SGN-E205315+) 1 GCCGAGTTTT ATCCACTTCC TCTCTCGTTC GTCTTTCTTC TTCTATCAGA AAGAAAAGAA 61 AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG GTTTCACCTT 121 CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC ACCCAAAACC 181 ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG GCCCCCCCTA 241 AGCCCGGTGG TGGTAAAGCG AACAAAGTCA CTGGTATTAT AAAGTTAGCT CTCGAGGCAG 301 GGAAGGCAAC CCCAGCTCCA CCCGTGGGGC CGGCCTTGGG TTCCAAAGGT GTTAACATCA 361 TGGCATTCTG TAAGGATTAC AATGCCAGAA CTGCTGACAA AGCTGGTTAT GCTATTCCTG 421 TGGAAATCAC CGTCTATGAT GATAGAAGCT Predicted gene structure (within gDNA segment 63590 to 65405): Exon 1 64190 64456 ( 267 n); cDNA 1 267 ( 267 n); score: 0.993 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 268 440 ( 173 n); score: 0.994 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 0.98), Pa: 0.816 (s: 0) Exon 3 64779 64788 ( 10 n); cDNA 441 450 ( 10 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E205315+ 0.993 450 1.000 C PGS_C08HBa0064M21.1+_SGN-E205315+ (64190 64456,64532 64704,64779 64788) Alignment (genomic DNA sequence = upper lines): GCCGAGTTTT ATCCACTTCC TCTCTCGTTC GTCTTTCTTC TTCTATCAGA AAGAAAAGAA 64249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGTTTT ATCCACTTCC TCTCTCGTTC GTCTTTCTTC TTCTATCAGA AAGAAAAGAA 60 AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG TTTTCACCTT 64309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG GTTTCACCTT 120 CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC ACCCAAAACC 64369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC ACCCAAAACC 180 ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG GCCCCCCCTA 64429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG GCCCCCCCTA 240 AGCCCGGTGG TGGTAAAGCG AAGAAAGGTA TTATTTTCAC TTTGCTTTTT AAGTTTGGGG 64489 |||||||||| |||||||||| || |||| AGCCCGGTGG TGGTAAAGCG AACAAAG... .......... .......... .......... 267 TTTGAATATT TTTACTGATG GGTTGCATTT TTTTTTGGTC AGTCACTGGT ATTATAAAGT 64549 |||||||| |||||||||| .......... .......... .......... .......... ..TCACTGGT ATTATAAAGT 285 TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC TTGGGTTCCA 64609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC TTGGGTTCCA 345 AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT GACAAAGCTG 64669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT GACAAAGCTG 405 GTTATGTTAT TCCTGTGGAA ATCACCGTCT ATGATGTCAG TTCTTCATTT TTATTGCCAA 64729 |||||| ||| |||||||||| |||||||||| ||||| GTTATGCTAT TCCTGTGGAA ATCACCGTCT ATGAT..... .......... .......... 440 TTATTAAAAC ATGATTAAAG TCTCATTGTG CCTCTTCCTT CTCTTCCAGG ATAGAAGCT 64788 | ||||||||| .......... .......... .......... .......... .........G ATAGAAGCT 450 hqPGS_C08HBa0064M21.1+_SGN-E205315+ (64190 64456,64532 64704,64779 64788) ******************************************************************************** EST sequence 35 +strand 652 n (File: SGN-E297759+) 1 TTTTATCCAC TTCCTCTCTC GTTCGTCTTT CTTCTTCTAT CAGAAAGAAA AGAAAAATGG 61 CGTCTTTATC GAGTTGTAAT CATCCAGGGA AACTCTGTTC CTCGTTTTCA CCTTCCTCCC 121 TTAAGTTGTC ATGGGTCCAA CGCGTGTCGG TTCAGTTCAT TCACACCCAA AACCACACTT 181 GTTCCCTTCC TTATGCTCCA AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG 241 GTGGTGGTAA AGCGAAGAAA GTCACTGGTA TTATAAAGTT AGCTCTCGAG GCAGGGAAGG 301 CAACCCCAGC TCCACCCGTG GGGCCGGCCT TGGGTTCCAA AGGTGTTAAC ATCATGGCAT 361 TCTGTAAGGA TTACAATGCC AGAACTGCTG ACAAAGCTGG TTATGTTATT CCTGTGGAAA 421 TCACCGTCTA TGATGATAGA AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT 481 TGCTGCTCAA GGCTGCAGGA GTGGAAAAGG GCTCGAAGGA CCCACAGAGG GAGAAAGTGG 541 GGAAAATAAC TATTGATCAA TTGAAGGTAA TTGCTCAAGA GAAGTTGCCG GATCTTAATT 601 GTTCTACTAT TGAATCTGCA ATGAGGATAA TAGCTGGCAC TGCAGCAAAT AT Predicted gene structure (within gDNA segment 63596 to 67088): Exon 1 64196 64456 ( 261 n); cDNA 1 261 ( 261 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 262 434 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 435 498 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66478 ( 154 n); cDNA 499 652 ( 154 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E297759+ 1.000 652 1.000 C PGS_C08HBa0064M21.1+_SGN-E297759+ (64196 64456,64532 64704,64779 64842,66325 66478) Alignment (genomic DNA sequence = upper lines): TTTTATCCAC TTCCTCTCTC GTTCGTCTTT CTTCTTCTAT CAGAAAGAAA AGAAAAATGG 64255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATCCAC TTCCTCTCTC GTTCGTCTTT CTTCTTCTAT CAGAAAGAAA AGAAAAATGG 60 CGTCTTTATC GAGTTGTAAT CATCCAGGGA AACTCTGTTC CTCGTTTTCA CCTTCCTCCC 64315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCTTTATC GAGTTGTAAT CATCCAGGGA AACTCTGTTC CTCGTTTTCA CCTTCCTCCC 120 TTAAGTTGTC ATGGGTCCAA CGCGTGTCGG TTCAGTTCAT TCACACCCAA AACCACACTT 64375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTTGTC ATGGGTCCAA CGCGTGTCGG TTCAGTTCAT TCACACCCAA AACCACACTT 180 GTTCCCTTCC TTATGCTCCA AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG 64435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCCTTCC TTATGCTCCA AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG 240 GTGGTGGTAA AGCGAAGAAA GGTATTATTT TCACTTTGCT TTTTAAGTTT GGGGTTTGAA 64495 |||||||||| |||||||||| | GTGGTGGTAA AGCGAAGAAA G......... .......... .......... .......... 261 TATTTTTACT GATGGGTTGC ATTTTTTTTT GGTCAGTCAC TGGTATTATA AAGTTAGCTC 64555 |||| |||||||||| |||||||||| .......... .......... .......... ......TCAC TGGTATTATA AAGTTAGCTC 285 TCGAGGCAGG GAAGGCAACC CCAGCTCCAC CCGTGGGGCC GGCCTTGGGT TCCAAAGGTG 64615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGGCAGG GAAGGCAACC CCAGCTCCAC CCGTGGGGCC GGCCTTGGGT TCCAAAGGTG 345 TTAACATCAT GGCATTCTGT AAGGATTACA ATGCCAGAAC TGCTGACAAA GCTGGTTATG 64675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACATCAT GGCATTCTGT AAGGATTACA ATGCCAGAAC TGCTGACAAA GCTGGTTATG 405 TTATTCCTGT GGAAATCACC GTCTATGATG TCAGTTCTTC ATTTTTATTG CCAATTATTA 64735 |||||||||| |||||||||| ||||||||| TTATTCCTGT GGAAATCACC GTCTATGAT. .......... .......... .......... 434 AAACATGATT AAAGTCTCAT TGTGCCTCTT CCTTCTCTTC CAGGATAGAA GCTTCACTTT 64795 ||||||| |||||||||| .......... .......... .......... .......... ...GATAGAA GCTTCACTTT 451 TATCTTGAAG ACCCCACCTG CTTCTGTTTT GCTGCTCAAG GCTGCAGGTA TTTAGAATTT 64855 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATCTTGAAG ACCCCACCTG CTTCTGTTTT GCTGCTCAAG GCTGCAG... .......... 498 TTCAGTAAAA ATGTGAAGGT TTAGTTTAGA GGCAAGTCAG GAAAACTAAA TGATTCATTT 64915 .......... .......... .......... .......... .......... .......... 498 AGAGTTAGTT ACCATTTAGC TTGAATATGA AGGACACAAG AATGTATTTG ATTTACTGAT 64975 .......... .......... .......... .......... .......... .......... 498 TGATGTACGA TGCTCAACTT GGTGCTGAAT ATATCAAGCT AGTTTTGGAT GAGTACATCA 65035 .......... .......... .......... .......... .......... .......... 498 TATCCTGGCC TATTACTACC ACACTCTTGC TTGTTGTTCC AACATCAGTC ACCACAGTTG 65095 .......... .......... .......... .......... .......... .......... 498 TATGAGACAT ATGGCCACTT CTCTGCCGGA ATTCCATAAA TATTTGCTTG TAGTTTGAGA 65155 .......... .......... .......... .......... .......... .......... 498 TCAAGAAATT CATAAAATCC TCTTTAGCTC TAGACTTATA GAGTACTTAT AAGGACATTA 65215 .......... .......... .......... .......... .......... .......... 498 ACATTTATGA CAGCAAGGAA GGTGAAGGGT TAAGCACTCC CCTAAACAAT AGACACCCTT 65275 .......... .......... .......... .......... .......... .......... 498 GAAGACTACC ACTTGATATA CTACCCCATG ATCTTGGCTT GAATCAGGAA CTAAAACTAG 65335 .......... .......... .......... .......... .......... .......... 498 TTTATGCCTG ATATTAGTTA ACCACCTCAC CTGTGCACTT TTTAAACAAA GGACGCCTGT 65395 .......... .......... .......... .......... .......... .......... 498 GAAGACTACA ACTCGAAGCA CTATCCAATG ATCTTGGCTT GAATTGGGTA TAAGAACAGG 65455 .......... .......... .......... .......... .......... .......... 498 AAACTTTAGA GTCTTGTTTA TGAAAATTTT CCCGCCTTCC ATGATATTTT TCATAGTAGG 65515 .......... .......... .......... .......... .......... .......... 498 ACGTAGACAT GTAAAATTAC AGAAAAACTA GACTGAAAAC TCCCTTTTTT TAAATTTTCC 65575 .......... .......... .......... .......... .......... .......... 498 ATGTTGCTCT GCTAGATGGT TGGACAAAAA GGGAGAACGA AAAAAAAAGA AATATTGAAA 65635 .......... .......... .......... .......... .......... .......... 498 TCCGAATTAG AAAAACAGTT GAGACTCTCT TTCTTTCTGG GTGGAGAATG ATCATATATA 65695 .......... .......... .......... .......... .......... .......... 498 TAGATGCTCT GGCTGCGGTT TTCTACTCAT AGACTATAGT TCTATGCTAA TCCAAAATAG 65755 .......... .......... .......... .......... .......... .......... 498 GCAGTAGATT TAAACATTTC GTGTTTGGAA TGGCAAAATC ATTGGGCATG CTGTCCTTGC 65815 .......... .......... .......... .......... .......... .......... 498 TTCAACAAAC TATAGAACTA AAATGAACTC CTTCGTTATT GTATAAGCAC TGTTTTTTGG 65875 .......... .......... .......... .......... .......... .......... 498 GTTACAGTTG ATTATAATAA CATGAAAGGT AATTTTTGAA GTAGATAACA GTGAGTGAAA 65935 .......... .......... .......... .......... .......... .......... 498 TAAATTTGCT CAAAAAGTTA GAATATTAGC TTGTTCTACT AGATGTTTAT GCATACTGCT 65995 .......... .......... .......... .......... .......... .......... 498 GATATCCCCT TTCTTTGGTA TATGGGGTCA AACCCCCTGT TTTATTCAGG GAAAAATGCC 66055 .......... .......... .......... .......... .......... .......... 498 AGCACTGACT TGGTGCTTGA TCATTTTGAT GAATAAGATC TTTGCTTATC CCATAATAAA 66115 .......... .......... .......... .......... .......... .......... 498 AAGTATAATT TCACAATTTG GAAATCAGGC GTTCAATCAA AATAATACAC CTTGTAGATG 66175 .......... .......... .......... .......... .......... .......... 498 TTAATGTGAA CTTGTGCTGG AGTTTAGCTT TTTATGGTGC AGTTACTCTA TCTTTGCTAT 66235 .......... .......... .......... .......... .......... .......... 498 AGCCTGGTTG TCATAAAGTT GTGGTGCATA CAAAAGTTTG GATAGTTTCC AAAGATGTGA 66295 .......... .......... .......... .......... .......... .......... 498 AGATGATTAA CTATTTTATC ACTTTGTAGG AGTGGAAAAG GGCTCGAAGG ACCCACAGAG 66355 | |||||||||| |||||||||| |||||||||| .......... .......... .........G AGTGGAAAAG GGCTCGAAGG ACCCACAGAG 529 GGAGAAAGTG GGGAAAATAA CTATTGATCA ATTGAAGGTA ATTGCTCAAG AGAAGTTGCC 66415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAAGTG GGGAAAATAA CTATTGATCA ATTGAAGGTA ATTGCTCAAG AGAAGTTGCC 589 GGATCTTAAT TGTTCTACTA TTGAATCTGC AATGAGGATA ATAGCTGGCA CTGCAGCAAA 66475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTTAAT TGTTCTACTA TTGAATCTGC AATGAGGATA ATAGCTGGCA CTGCAGCAAA 649 TAT 66478 ||| TAT 652 hqPGS_C08HBa0064M21.1+_SGN-E297759+ (64196 64456,64532 64704,64779 64842,66325 66478) ******************************************************************************** EST sequence 10 +strand 527 n (File: SGN-E285080+) 1 TTCTTCTTCT ATCAGAAAGA AAAGAAAAAT GGCGTCTTTA TCGAGTTGTA ATCATCCAGG 61 GAAACTCTGT TCCTCGTTTT CACCTTCCTC CCTTAAGTTG TCATGGGTCC AACGCGTGTC 121 GGTTCAGTTC ATTCACACCC AAAACCACAC TTGTTCCCTT CCTTATGCTC CAAGGGCTCT 181 CACTGTCATT TCCATGGCCC CCCCTAAGCC CGGTGGTGGT AAAGCGAAGA AAGTCACTGG 241 TATTATAAAG TTAGCTCTCG AGGCAGGGAA GGCAACCCCA GCTCCACCCG TGGGGCCGGC 301 CTTGGGTTCC AAAGGTGTTA ACATCATGGC ATTCTGTAAG GATTACAATG CCAGAACTGC 361 TGACAAAGCT GGTTATGTTA TTCCTGTGGA AATCACCGTC TATGATGATA GAAGCTTCAC 421 TTTTATCTTG AAGACCCCAC CTGCTTCTGT TTTGCTGCTC AAGGCTGCAG GAGTGGAAAA 481 GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTG Predicted gene structure (within gDNA segment 63624 to 66991): Exon 1 64224 64456 ( 233 n); cDNA 1 233 ( 233 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 234 406 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 407 470 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66381 ( 57 n); cDNA 471 527 ( 57 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E285080+ 1.000 527 1.000 C PGS_C08HBa0064M21.1+_SGN-E285080+ (64224 64456,64532 64704,64779 64842,66325 66381) Alignment (genomic DNA sequence = upper lines): TTCTTCTTCT ATCAGAAAGA AAAGAAAAAT GGCGTCTTTA TCGAGTTGTA ATCATCCAGG 64283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTTCT ATCAGAAAGA AAAGAAAAAT GGCGTCTTTA TCGAGTTGTA ATCATCCAGG 60 GAAACTCTGT TCCTCGTTTT CACCTTCCTC CCTTAAGTTG TCATGGGTCC AACGCGTGTC 64343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACTCTGT TCCTCGTTTT CACCTTCCTC CCTTAAGTTG TCATGGGTCC AACGCGTGTC 120 GGTTCAGTTC ATTCACACCC AAAACCACAC TTGTTCCCTT CCTTATGCTC CAAGGGCTCT 64403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCAGTTC ATTCACACCC AAAACCACAC TTGTTCCCTT CCTTATGCTC CAAGGGCTCT 180 CACTGTCATT TCCATGGCCC CCCCTAAGCC CGGTGGTGGT AAAGCGAAGA AAGGTATTAT 64463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CACTGTCATT TCCATGGCCC CCCCTAAGCC CGGTGGTGGT AAAGCGAAGA AAG....... 233 TTTCACTTTG CTTTTTAAGT TTGGGGTTTG AATATTTTTA CTGATGGGTT GCATTTTTTT 64523 .......... .......... .......... .......... .......... .......... 233 TTGGTCAGTC ACTGGTATTA TAAAGTTAGC TCTCGAGGCA GGGAAGGCAA CCCCAGCTCC 64583 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC ACTGGTATTA TAAAGTTAGC TCTCGAGGCA GGGAAGGCAA CCCCAGCTCC 285 ACCCGTGGGG CCGGCCTTGG GTTCCAAAGG TGTTAACATC ATGGCATTCT GTAAGGATTA 64643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCGTGGGG CCGGCCTTGG GTTCCAAAGG TGTTAACATC ATGGCATTCT GTAAGGATTA 345 CAATGCCAGA ACTGCTGACA AAGCTGGTTA TGTTATTCCT GTGGAAATCA CCGTCTATGA 64703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGCCAGA ACTGCTGACA AAGCTGGTTA TGTTATTCCT GTGGAAATCA CCGTCTATGA 405 TGTCAGTTCT TCATTTTTAT TGCCAATTAT TAAAACATGA TTAAAGTCTC ATTGTGCCTC 64763 | T......... .......... .......... .......... .......... .......... 406 TTCCTTCTCT TCCAGGATAG AAGCTTCACT TTTATCTTGA AGACCCCACC TGCTTCTGTT 64823 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATAG AAGCTTCACT TTTATCTTGA AGACCCCACC TGCTTCTGTT 451 TTGCTGCTCA AGGCTGCAGG TATTTAGAAT TTTTCAGTAA AAATGTGAAG GTTTAGTTTA 64883 |||||||||| ||||||||| TTGCTGCTCA AGGCTGCAG. .......... .......... .......... .......... 470 GAGGCAAGTC AGGAAAACTA AATGATTCAT TTAGAGTTAG TTACCATTTA GCTTGAATAT 64943 .......... .......... .......... .......... .......... .......... 470 GAAGGACACA AGAATGTATT TGATTTACTG ATTGATGTAC GATGCTCAAC TTGGTGCTGA 65003 .......... .......... .......... .......... .......... .......... 470 ATATATCAAG CTAGTTTTGG ATGAGTACAT CATATCCTGG CCTATTACTA CCACACTCTT 65063 .......... .......... .......... .......... .......... .......... 470 GCTTGTTGTT CCAACATCAG TCACCACAGT TGTATGAGAC ATATGGCCAC TTCTCTGCCG 65123 .......... .......... .......... .......... .......... .......... 470 GAATTCCATA AATATTTGCT TGTAGTTTGA GATCAAGAAA TTCATAAAAT CCTCTTTAGC 65183 .......... .......... .......... .......... .......... .......... 470 TCTAGACTTA TAGAGTACTT ATAAGGACAT TAACATTTAT GACAGCAAGG AAGGTGAAGG 65243 .......... .......... .......... .......... .......... .......... 470 GTTAAGCACT CCCCTAAACA ATAGACACCC TTGAAGACTA CCACTTGATA TACTACCCCA 65303 .......... .......... .......... .......... .......... .......... 470 TGATCTTGGC TTGAATCAGG AACTAAAACT AGTTTATGCC TGATATTAGT TAACCACCTC 65363 .......... .......... .......... .......... .......... .......... 470 ACCTGTGCAC TTTTTAAACA AAGGACGCCT GTGAAGACTA CAACTCGAAG CACTATCCAA 65423 .......... .......... .......... .......... .......... .......... 470 TGATCTTGGC TTGAATTGGG TATAAGAACA GGAAACTTTA GAGTCTTGTT TATGAAAATT 65483 .......... .......... .......... .......... .......... .......... 470 TTCCCGCCTT CCATGATATT TTTCATAGTA GGACGTAGAC ATGTAAAATT ACAGAAAAAC 65543 .......... .......... .......... .......... .......... .......... 470 TAGACTGAAA ACTCCCTTTT TTTAAATTTT CCATGTTGCT CTGCTAGATG GTTGGACAAA 65603 .......... .......... .......... .......... .......... .......... 470 AAGGGAGAAC GAAAAAAAAA GAAATATTGA AATCCGAATT AGAAAAACAG TTGAGACTCT 65663 .......... .......... .......... .......... .......... .......... 470 CTTTCTTTCT GGGTGGAGAA TGATCATATA TATAGATGCT CTGGCTGCGG TTTTCTACTC 65723 .......... .......... .......... .......... .......... .......... 470 ATAGACTATA GTTCTATGCT AATCCAAAAT AGGCAGTAGA TTTAAACATT TCGTGTTTGG 65783 .......... .......... .......... .......... .......... .......... 470 AATGGCAAAA TCATTGGGCA TGCTGTCCTT GCTTCAACAA ACTATAGAAC TAAAATGAAC 65843 .......... .......... .......... .......... .......... .......... 470 TCCTTCGTTA TTGTATAAGC ACTGTTTTTT GGGTTACAGT TGATTATAAT AACATGAAAG 65903 .......... .......... .......... .......... .......... .......... 470 GTAATTTTTG AAGTAGATAA CAGTGAGTGA AATAAATTTG CTCAAAAAGT TAGAATATTA 65963 .......... .......... .......... .......... .......... .......... 470 GCTTGTTCTA CTAGATGTTT ATGCATACTG CTGATATCCC CTTTCTTTGG TATATGGGGT 66023 .......... .......... .......... .......... .......... .......... 470 CAAACCCCCT GTTTTATTCA GGGAAAAATG CCAGCACTGA CTTGGTGCTT GATCATTTTG 66083 .......... .......... .......... .......... .......... .......... 470 ATGAATAAGA TCTTTGCTTA TCCCATAATA AAAAGTATAA TTTCACAATT TGGAAATCAG 66143 .......... .......... .......... .......... .......... .......... 470 GCGTTCAATC AAAATAATAC ACCTTGTAGA TGTTAATGTG AACTTGTGCT GGAGTTTAGC 66203 .......... .......... .......... .......... .......... .......... 470 TTTTTATGGT GCAGTTACTC TATCTTTGCT ATAGCCTGGT TGTCATAAAG TTGTGGTGCA 66263 .......... .......... .......... .......... .......... .......... 470 TACAAAAGTT TGGATAGTTT CCAAAGATGT GAAGATGATT AACTATTTTA TCACTTTGTA 66323 .......... .......... .......... .......... .......... .......... 470 GGAGTGGAAA AGGGCTCGAA GGACCCACAG AGGGAGAAAG TGGGGAAAAT AACTATTG 66381 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| .GAGTGGAAA AGGGCTCGAA GGACCCACAG AGGGAGAAAG TGGGGAAAAT AACTATTG 527 hqPGS_C08HBa0064M21.1+_SGN-E285080+ (64224 64456,64532 64704,64779 64842,66325 66381) ******************************************************************************** EST sequence 47 +strand 589 n (File: SGN-E288804+) 1 TCTTCTTCTA TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG 61 AAACTCTGTT CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG 121 GTTCAGTTCA TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC 181 ACTGTCATTT CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AGTCACTGGT 241 ATTATAAAGT TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC 301 TTGGGTTCCA AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT 361 GACAAAGCTG GTTATGTTAT TCCTGTGGAA ATCACCGTCT ATGATGATAG AAGCTTCACT 421 TTTATCTTGA AGACCCCACC TGCTTCTGTT TTGCTGCTCA AGGCTGCAGG AGTGGAAAAG 481 GGCTCGAAGG ACCCACAGAG GGAGAAAGTG GGGAAAATAA CTATTGATCA ATTGAAGGTA 541 ATTGCTCAAG AGAAGTTGCC GGATCTTAAT TGTTCTACTA TTGAATCTG Predicted gene structure (within gDNA segment 63625 to 67054): Exon 1 64225 64456 ( 232 n); cDNA 1 232 ( 232 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 233 405 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 406 469 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66444 ( 120 n); cDNA 470 589 ( 120 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E288804+ 1.000 589 1.000 C PGS_C08HBa0064M21.1+_SGN-E288804+ (64225 64456,64532 64704,64779 64842,66325 66444) Alignment (genomic DNA sequence = upper lines): TCTTCTTCTA TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG 64284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCTA TCAGAAAGAA AAGAAAAATG GCGTCTTTAT CGAGTTGTAA TCATCCAGGG 60 AAACTCTGTT CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG 64344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTCTGTT CCTCGTTTTC ACCTTCCTCC CTTAAGTTGT CATGGGTCCA ACGCGTGTCG 120 GTTCAGTTCA TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC 64404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAGTTCA TTCACACCCA AAACCACACT TGTTCCCTTC CTTATGCTCC AAGGGCTCTC 180 ACTGTCATTT CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AGGTATTATT 64464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ACTGTCATTT CCATGGCCCC CCCTAAGCCC GGTGGTGGTA AAGCGAAGAA AG........ 232 TTCACTTTGC TTTTTAAGTT TGGGGTTTGA ATATTTTTAC TGATGGGTTG CATTTTTTTT 64524 .......... .......... .......... .......... .......... .......... 232 TGGTCAGTCA CTGGTATTAT AAAGTTAGCT CTCGAGGCAG GGAAGGCAAC CCCAGCTCCA 64584 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TCA CTGGTATTAT AAAGTTAGCT CTCGAGGCAG GGAAGGCAAC CCCAGCTCCA 285 CCCGTGGGGC CGGCCTTGGG TTCCAAAGGT GTTAACATCA TGGCATTCTG TAAGGATTAC 64644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGTGGGGC CGGCCTTGGG TTCCAAAGGT GTTAACATCA TGGCATTCTG TAAGGATTAC 345 AATGCCAGAA CTGCTGACAA AGCTGGTTAT GTTATTCCTG TGGAAATCAC CGTCTATGAT 64704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCCAGAA CTGCTGACAA AGCTGGTTAT GTTATTCCTG TGGAAATCAC CGTCTATGAT 405 GTCAGTTCTT CATTTTTATT GCCAATTATT AAAACATGAT TAAAGTCTCA TTGTGCCTCT 64764 .......... .......... .......... .......... .......... .......... 405 TCCTTCTCTT CCAGGATAGA AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT 64824 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GATAGA AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT 451 TGCTGCTCAA GGCTGCAGGT ATTTAGAATT TTTCAGTAAA AATGTGAAGG TTTAGTTTAG 64884 |||||||||| |||||||| TGCTGCTCAA GGCTGCAG.. .......... .......... .......... .......... 469 AGGCAAGTCA GGAAAACTAA ATGATTCATT TAGAGTTAGT TACCATTTAG CTTGAATATG 64944 .......... .......... .......... .......... .......... .......... 469 AAGGACACAA GAATGTATTT GATTTACTGA TTGATGTACG ATGCTCAACT TGGTGCTGAA 65004 .......... .......... .......... .......... .......... .......... 469 TATATCAAGC TAGTTTTGGA TGAGTACATC ATATCCTGGC CTATTACTAC CACACTCTTG 65064 .......... .......... .......... .......... .......... .......... 469 CTTGTTGTTC CAACATCAGT CACCACAGTT GTATGAGACA TATGGCCACT TCTCTGCCGG 65124 .......... .......... .......... .......... .......... .......... 469 AATTCCATAA ATATTTGCTT GTAGTTTGAG ATCAAGAAAT TCATAAAATC CTCTTTAGCT 65184 .......... .......... .......... .......... .......... .......... 469 CTAGACTTAT AGAGTACTTA TAAGGACATT AACATTTATG ACAGCAAGGA AGGTGAAGGG 65244 .......... .......... .......... .......... .......... .......... 469 TTAAGCACTC CCCTAAACAA TAGACACCCT TGAAGACTAC CACTTGATAT ACTACCCCAT 65304 .......... .......... .......... .......... .......... .......... 469 GATCTTGGCT TGAATCAGGA ACTAAAACTA GTTTATGCCT GATATTAGTT AACCACCTCA 65364 .......... .......... .......... .......... .......... .......... 469 CCTGTGCACT TTTTAAACAA AGGACGCCTG TGAAGACTAC AACTCGAAGC ACTATCCAAT 65424 .......... .......... .......... .......... .......... .......... 469 GATCTTGGCT TGAATTGGGT ATAAGAACAG GAAACTTTAG AGTCTTGTTT ATGAAAATTT 65484 .......... .......... .......... .......... .......... .......... 469 TCCCGCCTTC CATGATATTT TTCATAGTAG GACGTAGACA TGTAAAATTA CAGAAAAACT 65544 .......... .......... .......... .......... .......... .......... 469 AGACTGAAAA CTCCCTTTTT TTAAATTTTC CATGTTGCTC TGCTAGATGG TTGGACAAAA 65604 .......... .......... .......... .......... .......... .......... 469 AGGGAGAACG AAAAAAAAAG AAATATTGAA ATCCGAATTA GAAAAACAGT TGAGACTCTC 65664 .......... .......... .......... .......... .......... .......... 469 TTTCTTTCTG GGTGGAGAAT GATCATATAT ATAGATGCTC TGGCTGCGGT TTTCTACTCA 65724 .......... .......... .......... .......... .......... .......... 469 TAGACTATAG TTCTATGCTA ATCCAAAATA GGCAGTAGAT TTAAACATTT CGTGTTTGGA 65784 .......... .......... .......... .......... .......... .......... 469 ATGGCAAAAT CATTGGGCAT GCTGTCCTTG CTTCAACAAA CTATAGAACT AAAATGAACT 65844 .......... .......... .......... .......... .......... .......... 469 CCTTCGTTAT TGTATAAGCA CTGTTTTTTG GGTTACAGTT GATTATAATA ACATGAAAGG 65904 .......... .......... .......... .......... .......... .......... 469 TAATTTTTGA AGTAGATAAC AGTGAGTGAA ATAAATTTGC TCAAAAAGTT AGAATATTAG 65964 .......... .......... .......... .......... .......... .......... 469 CTTGTTCTAC TAGATGTTTA TGCATACTGC TGATATCCCC TTTCTTTGGT ATATGGGGTC 66024 .......... .......... .......... .......... .......... .......... 469 AAACCCCCTG TTTTATTCAG GGAAAAATGC CAGCACTGAC TTGGTGCTTG ATCATTTTGA 66084 .......... .......... .......... .......... .......... .......... 469 TGAATAAGAT CTTTGCTTAT CCCATAATAA AAAGTATAAT TTCACAATTT GGAAATCAGG 66144 .......... .......... .......... .......... .......... .......... 469 CGTTCAATCA AAATAATACA CCTTGTAGAT GTTAATGTGA ACTTGTGCTG GAGTTTAGCT 66204 .......... .......... .......... .......... .......... .......... 469 TTTTATGGTG CAGTTACTCT ATCTTTGCTA TAGCCTGGTT GTCATAAAGT TGTGGTGCAT 66264 .......... .......... .......... .......... .......... .......... 469 ACAAAAGTTT GGATAGTTTC CAAAGATGTG AAGATGATTA ACTATTTTAT CACTTTGTAG 66324 .......... .......... .......... .......... .......... .......... 469 GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 66384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 529 AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 66444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 589 hqPGS_C08HBa0064M21.1+_SGN-E288804+ (64225 64456,64532 64704,64779 64842,66325 66444) ******************************************************************************** EST sequence 68 +strand 544 n (File: SGN-E287079+) 1 TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 61 CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 121 CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 181 GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAGT CACTGGTATT 241 ATAAAGTTAG CTCTCGAGGC AGGGAAGGCA ACCCCAGCTC CACCCGTGGG GCCGGCCTTG 301 GGTTCCAAAG GTGTTAACAT CATGGCATTC TGTAAGGATT ACAATGCCAG AACTGCTGAC 361 AAAGCTGGTT ATGTTATTCC TGTGGAAATC ACCGTCTATG ATGATAGAAG CTTCACTTTT 421 ATCTTGAAGA CCCCACCTGC TTCTGTTTTG CTGCTCAAGG CTGCAGGAGT GGAAAAAGGC 481 TCGAAAGACC CACAGAGGGA GAAAGTGGGG AAAATAACTA TTGATCAATT GAAGGTAATT 541 GCTC Predicted gene structure (within gDNA segment 63628 to 67012): Exon 1 64228 64456 ( 229 n); cDNA 1 229 ( 229 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 230 402 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 403 466 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 0.96) Exon 4 66325 66402 ( 78 n); cDNA 467 544 ( 78 n); score: 0.974 MATCH C08HBa0064M21.1+ SGN-E287079+ 0.996 544 1.000 C PGS_C08HBa0064M21.1+_SGN-E287079+ (64228 64456,64532 64704,64779 64842,66325 66402) Alignment (genomic DNA sequence = upper lines): TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 64287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 60 CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 64347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 120 CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 64407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 180 GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAGG TATTATTTTC 64467 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAG. .......... 229 ACTTTGCTTT TTAAGTTTGG GGTTTGAATA TTTTTACTGA TGGGTTGCAT TTTTTTTTGG 64527 .......... .......... .......... .......... .......... .......... 229 TCAGTCACTG GTATTATAAA GTTAGCTCTC GAGGCAGGGA AGGCAACCCC AGCTCCACCC 64587 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCACTG GTATTATAAA GTTAGCTCTC GAGGCAGGGA AGGCAACCCC AGCTCCACCC 285 GTGGGGCCGG CCTTGGGTTC CAAAGGTGTT AACATCATGG CATTCTGTAA GGATTACAAT 64647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGGCCGG CCTTGGGTTC CAAAGGTGTT AACATCATGG CATTCTGTAA GGATTACAAT 345 GCCAGAACTG CTGACAAAGC TGGTTATGTT ATTCCTGTGG AAATCACCGT CTATGATGTC 64707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCCAGAACTG CTGACAAAGC TGGTTATGTT ATTCCTGTGG AAATCACCGT CTATGAT... 402 AGTTCTTCAT TTTTATTGCC AATTATTAAA ACATGATTAA AGTCTCATTG TGCCTCTTCC 64767 .......... .......... .......... .......... .......... .......... 402 TTCTCTTCCA GGATAGAAGC TTCACTTTTA TCTTGAAGAC CCCACCTGCT TCTGTTTTGC 64827 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GATAGAAGC TTCACTTTTA TCTTGAAGAC CCCACCTGCT TCTGTTTTGC 451 TGCTCAAGGC TGCAGGTATT TAGAATTTTT CAGTAAAAAT GTGAAGGTTT AGTTTAGAGG 64887 |||||||||| ||||| TGCTCAAGGC TGCAG..... .......... .......... .......... .......... 466 CAAGTCAGGA AAACTAAATG ATTCATTTAG AGTTAGTTAC CATTTAGCTT GAATATGAAG 64947 .......... .......... .......... .......... .......... .......... 466 GACACAAGAA TGTATTTGAT TTACTGATTG ATGTACGATG CTCAACTTGG TGCTGAATAT 65007 .......... .......... .......... .......... .......... .......... 466 ATCAAGCTAG TTTTGGATGA GTACATCATA TCCTGGCCTA TTACTACCAC ACTCTTGCTT 65067 .......... .......... .......... .......... .......... .......... 466 GTTGTTCCAA CATCAGTCAC CACAGTTGTA TGAGACATAT GGCCACTTCT CTGCCGGAAT 65127 .......... .......... .......... .......... .......... .......... 466 TCCATAAATA TTTGCTTGTA GTTTGAGATC AAGAAATTCA TAAAATCCTC TTTAGCTCTA 65187 .......... .......... .......... .......... .......... .......... 466 GACTTATAGA GTACTTATAA GGACATTAAC ATTTATGACA GCAAGGAAGG TGAAGGGTTA 65247 .......... .......... .......... .......... .......... .......... 466 AGCACTCCCC TAAACAATAG ACACCCTTGA AGACTACCAC TTGATATACT ACCCCATGAT 65307 .......... .......... .......... .......... .......... .......... 466 CTTGGCTTGA ATCAGGAACT AAAACTAGTT TATGCCTGAT ATTAGTTAAC CACCTCACCT 65367 .......... .......... .......... .......... .......... .......... 466 GTGCACTTTT TAAACAAAGG ACGCCTGTGA AGACTACAAC TCGAAGCACT ATCCAATGAT 65427 .......... .......... .......... .......... .......... .......... 466 CTTGGCTTGA ATTGGGTATA AGAACAGGAA ACTTTAGAGT CTTGTTTATG AAAATTTTCC 65487 .......... .......... .......... .......... .......... .......... 466 CGCCTTCCAT GATATTTTTC ATAGTAGGAC GTAGACATGT AAAATTACAG AAAAACTAGA 65547 .......... .......... .......... .......... .......... .......... 466 CTGAAAACTC CCTTTTTTTA AATTTTCCAT GTTGCTCTGC TAGATGGTTG GACAAAAAGG 65607 .......... .......... .......... .......... .......... .......... 466 GAGAACGAAA AAAAAAGAAA TATTGAAATC CGAATTAGAA AAACAGTTGA GACTCTCTTT 65667 .......... .......... .......... .......... .......... .......... 466 CTTTCTGGGT GGAGAATGAT CATATATATA GATGCTCTGG CTGCGGTTTT CTACTCATAG 65727 .......... .......... .......... .......... .......... .......... 466 ACTATAGTTC TATGCTAATC CAAAATAGGC AGTAGATTTA AACATTTCGT GTTTGGAATG 65787 .......... .......... .......... .......... .......... .......... 466 GCAAAATCAT TGGGCATGCT GTCCTTGCTT CAACAAACTA TAGAACTAAA ATGAACTCCT 65847 .......... .......... .......... .......... .......... .......... 466 TCGTTATTGT ATAAGCACTG TTTTTTGGGT TACAGTTGAT TATAATAACA TGAAAGGTAA 65907 .......... .......... .......... .......... .......... .......... 466 TTTTTGAAGT AGATAACAGT GAGTGAAATA AATTTGCTCA AAAAGTTAGA ATATTAGCTT 65967 .......... .......... .......... .......... .......... .......... 466 GTTCTACTAG ATGTTTATGC ATACTGCTGA TATCCCCTTT CTTTGGTATA TGGGGTCAAA 66027 .......... .......... .......... .......... .......... .......... 466 CCCCCTGTTT TATTCAGGGA AAAATGCCAG CACTGACTTG GTGCTTGATC ATTTTGATGA 66087 .......... .......... .......... .......... .......... .......... 466 ATAAGATCTT TGCTTATCCC ATAATAAAAA GTATAATTTC ACAATTTGGA AATCAGGCGT 66147 .......... .......... .......... .......... .......... .......... 466 TCAATCAAAA TAATACACCT TGTAGATGTT AATGTGAACT TGTGCTGGAG TTTAGCTTTT 66207 .......... .......... .......... .......... .......... .......... 466 TATGGTGCAG TTACTCTATC TTTGCTATAG CCTGGTTGTC ATAAAGTTGT GGTGCATACA 66267 .......... .......... .......... .......... .......... .......... 466 AAAGTTTGGA TAGTTTCCAA AGATGTGAAG ATGATTAACT ATTTTATCAC TTTGTAGGAG 66327 ||| .......... .......... .......... .......... .......... .......GAG 469 TGGAAAAGGG CTCGAAGGAC CCACAGAGGG AGAAAGTGGG GAAAATAACT ATTGATCAAT 66387 ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAAAGG CTCGAAAGAC CCACAGAGGG AGAAAGTGGG GAAAATAACT ATTGATCAAT 529 TGAAGGTAAT TGCTC 66402 |||||||||| ||||| TGAAGGTAAT TGCTC 544 hqPGS_C08HBa0064M21.1+_SGN-E287079+ (64228 64456,64532 64704,64779 64842,66325 66402) ******************************************************************************** EST sequence 62 +strand 392 n (File: SGN-E284576+) 1 TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 61 CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 121 CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 181 GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAGT CACTGGTATT 241 ATAAAGTTAG CTCTCGAGGC AGGGAAGGCA ACCCCAGCTC CACCCGTGGG GCCGGCCTTG 301 GGTTCCAAAG GTGTTAACAT CATGGCATTC TGTAAGGATT ACAATGCCAG AACTGCTGAC 361 AAAGCTGGTT ATGTTATTCC TGTGGAAATC AC Predicted gene structure (within gDNA segment 63628 to 65304): Exon 1 64228 64456 ( 229 n); cDNA 1 229 ( 229 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64694 ( 163 n); cDNA 230 392 ( 163 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E284576+ 1.000 392 1.000 C PGS_C08HBa0064M21.1+_SGN-E284576+ (64228 64456,64532 64694) Alignment (genomic DNA sequence = upper lines): TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 64287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTATCA GAAAGAAAAG AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA 60 CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 64347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGTTCCT CGTTTTCACC TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT 120 CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 64407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTCATTC ACACCCAAAA CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT 180 GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAGG TATTATTTTC 64467 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTCATTTCCA TGGCCCCCCC TAAGCCCGGT GGTGGTAAAG CGAAGAAAG. .......... 229 ACTTTGCTTT TTAAGTTTGG GGTTTGAATA TTTTTACTGA TGGGTTGCAT TTTTTTTTGG 64527 .......... .......... .......... .......... .......... .......... 229 TCAGTCACTG GTATTATAAA GTTAGCTCTC GAGGCAGGGA AGGCAACCCC AGCTCCACCC 64587 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCACTG GTATTATAAA GTTAGCTCTC GAGGCAGGGA AGGCAACCCC AGCTCCACCC 285 GTGGGGCCGG CCTTGGGTTC CAAAGGTGTT AACATCATGG CATTCTGTAA GGATTACAAT 64647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGGCCGG CCTTGGGTTC CAAAGGTGTT AACATCATGG CATTCTGTAA GGATTACAAT 345 GCCAGAACTG CTGACAAAGC TGGTTATGTT ATTCCTGTGG AAATCAC 64694 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCCAGAACTG CTGACAAAGC TGGTTATGTT ATTCCTGTGG AAATCAC 392 hqPGS_C08HBa0064M21.1+_SGN-E284576+ (64228 64456,64532 64694) ******************************************************************************** EST sequence 6 +strand 623 n (File: SGN-E340144+) 1 AAGAAAAGAA AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG 61 TTTTCACCTT CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC 121 ACCCAAAACC ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG 181 GCCCCCCCTA AGCCCGGTGG TGGTAAAGCG AAGAAAGTCA CTGGTATTAT AAAGTTAGCT 241 CTCGAGGCAG GGAAGGCAAC CCCAGCTCCA CCCGTGGGGC CGGCCTTGGG TTCCAAAGGT 301 GTTAACATCA TGGCATTCTG TAAGGATTAC AATGCCAGAA CTGCTGACAA AGCTGGTTAT 361 GTTATTCCTG TGGAAATCAC CGTCTATGAT GATAGAAGCT TCACTTTTAT CTTGAAGACC 421 CCACCTGCTT CTGTTTTGCT GCTCAAGGCT GCAGGAGTGG AAAAGGGCTC GAAGGACCCA 481 CAGAGGGAGA AAGTGGGGAA AATAACTATT GATCAATTGA AGGTAATTGC TCAAGAGAAG 541 TTGCCGGATC TTAATTGTTC TACTATTGAA TCTGCAATGA GGATAATAGC TGGCACTGCA 601 GCAAATATGG GAATTGACAT TGA Predicted gene structure (within gDNA segment 63640 to 67103): Exon 1 64240 64456 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 218 390 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 391 454 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66493 ( 169 n); cDNA 455 623 ( 169 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E340144+ 1.000 623 1.000 C PGS_C08HBa0064M21.1+_SGN-E340144+ (64240 64456,64532 64704,64779 64842,66325 66493) Alignment (genomic DNA sequence = upper lines): AAGAAAAGAA AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG 64299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAAGAA AAATGGCGTC TTTATCGAGT TGTAATCATC CAGGGAAACT CTGTTCCTCG 60 TTTTCACCTT CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC 64359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCACCTT CCTCCCTTAA GTTGTCATGG GTCCAACGCG TGTCGGTTCA GTTCATTCAC 120 ACCCAAAACC ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG 64419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCAAAACC ACACTTGTTC CCTTCCTTAT GCTCCAAGGG CTCTCACTGT CATTTCCATG 180 GCCCCCCCTA AGCCCGGTGG TGGTAAAGCG AAGAAAGGTA TTATTTTCAC TTTGCTTTTT 64479 |||||||||| |||||||||| |||||||||| ||||||| GCCCCCCCTA AGCCCGGTGG TGGTAAAGCG AAGAAAG... .......... .......... 217 AAGTTTGGGG TTTGAATATT TTTACTGATG GGTTGCATTT TTTTTTGGTC AGTCACTGGT 64539 |||||||| .......... .......... .......... .......... .......... ..TCACTGGT 225 ATTATAAAGT TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC 64599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAAAGT TAGCTCTCGA GGCAGGGAAG GCAACCCCAG CTCCACCCGT GGGGCCGGCC 285 TTGGGTTCCA AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT 64659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGTTCCA AAGGTGTTAA CATCATGGCA TTCTGTAAGG ATTACAATGC CAGAACTGCT 345 GACAAAGCTG GTTATGTTAT TCCTGTGGAA ATCACCGTCT ATGATGTCAG TTCTTCATTT 64719 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACAAAGCTG GTTATGTTAT TCCTGTGGAA ATCACCGTCT ATGAT..... .......... 390 TTATTGCCAA TTATTAAAAC ATGATTAAAG TCTCATTGTG CCTCTTCCTT CTCTTCCAGG 64779 | .......... .......... .......... .......... .......... .........G 391 ATAGAAGCTT CACTTTTATC TTGAAGACCC CACCTGCTTC TGTTTTGCTG CTCAAGGCTG 64839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAGCTT CACTTTTATC TTGAAGACCC CACCTGCTTC TGTTTTGCTG CTCAAGGCTG 451 CAGGTATTTA GAATTTTTCA GTAAAAATGT GAAGGTTTAG TTTAGAGGCA AGTCAGGAAA 64899 ||| CAG....... .......... .......... .......... .......... .......... 454 ACTAAATGAT TCATTTAGAG TTAGTTACCA TTTAGCTTGA ATATGAAGGA CACAAGAATG 64959 .......... .......... .......... .......... .......... .......... 454 TATTTGATTT ACTGATTGAT GTACGATGCT CAACTTGGTG CTGAATATAT CAAGCTAGTT 65019 .......... .......... .......... .......... .......... .......... 454 TTGGATGAGT ACATCATATC CTGGCCTATT ACTACCACAC TCTTGCTTGT TGTTCCAACA 65079 .......... .......... .......... .......... .......... .......... 454 TCAGTCACCA CAGTTGTATG AGACATATGG CCACTTCTCT GCCGGAATTC CATAAATATT 65139 .......... .......... .......... .......... .......... .......... 454 TGCTTGTAGT TTGAGATCAA GAAATTCATA AAATCCTCTT TAGCTCTAGA CTTATAGAGT 65199 .......... .......... .......... .......... .......... .......... 454 ACTTATAAGG ACATTAACAT TTATGACAGC AAGGAAGGTG AAGGGTTAAG CACTCCCCTA 65259 .......... .......... .......... .......... .......... .......... 454 AACAATAGAC ACCCTTGAAG ACTACCACTT GATATACTAC CCCATGATCT TGGCTTGAAT 65319 .......... .......... .......... .......... .......... .......... 454 CAGGAACTAA AACTAGTTTA TGCCTGATAT TAGTTAACCA CCTCACCTGT GCACTTTTTA 65379 .......... .......... .......... .......... .......... .......... 454 AACAAAGGAC GCCTGTGAAG ACTACAACTC GAAGCACTAT CCAATGATCT TGGCTTGAAT 65439 .......... .......... .......... .......... .......... .......... 454 TGGGTATAAG AACAGGAAAC TTTAGAGTCT TGTTTATGAA AATTTTCCCG CCTTCCATGA 65499 .......... .......... .......... .......... .......... .......... 454 TATTTTTCAT AGTAGGACGT AGACATGTAA AATTACAGAA AAACTAGACT GAAAACTCCC 65559 .......... .......... .......... .......... .......... .......... 454 TTTTTTTAAA TTTTCCATGT TGCTCTGCTA GATGGTTGGA CAAAAAGGGA GAACGAAAAA 65619 .......... .......... .......... .......... .......... .......... 454 AAAAGAAATA TTGAAATCCG AATTAGAAAA ACAGTTGAGA CTCTCTTTCT TTCTGGGTGG 65679 .......... .......... .......... .......... .......... .......... 454 AGAATGATCA TATATATAGA TGCTCTGGCT GCGGTTTTCT ACTCATAGAC TATAGTTCTA 65739 .......... .......... .......... .......... .......... .......... 454 TGCTAATCCA AAATAGGCAG TAGATTTAAA CATTTCGTGT TTGGAATGGC AAAATCATTG 65799 .......... .......... .......... .......... .......... .......... 454 GGCATGCTGT CCTTGCTTCA ACAAACTATA GAACTAAAAT GAACTCCTTC GTTATTGTAT 65859 .......... .......... .......... .......... .......... .......... 454 AAGCACTGTT TTTTGGGTTA CAGTTGATTA TAATAACATG AAAGGTAATT TTTGAAGTAG 65919 .......... .......... .......... .......... .......... .......... 454 ATAACAGTGA GTGAAATAAA TTTGCTCAAA AAGTTAGAAT ATTAGCTTGT TCTACTAGAT 65979 .......... .......... .......... .......... .......... .......... 454 GTTTATGCAT ACTGCTGATA TCCCCTTTCT TTGGTATATG GGGTCAAACC CCCTGTTTTA 66039 .......... .......... .......... .......... .......... .......... 454 TTCAGGGAAA AATGCCAGCA CTGACTTGGT GCTTGATCAT TTTGATGAAT AAGATCTTTG 66099 .......... .......... .......... .......... .......... .......... 454 CTTATCCCAT AATAAAAAGT ATAATTTCAC AATTTGGAAA TCAGGCGTTC AATCAAAATA 66159 .......... .......... .......... .......... .......... .......... 454 ATACACCTTG TAGATGTTAA TGTGAACTTG TGCTGGAGTT TAGCTTTTTA TGGTGCAGTT 66219 .......... .......... .......... .......... .......... .......... 454 ACTCTATCTT TGCTATAGCC TGGTTGTCAT AAAGTTGTGG TGCATACAAA AGTTTGGATA 66279 .......... .......... .......... .......... .......... .......... 454 GTTTCCAAAG ATGTGAAGAT GATTAACTAT TTTATCACTT TGTAGGAGTG GAAAAGGGCT 66339 ||||| |||||||||| .......... .......... .......... .......... .....GAGTG GAAAAGGGCT 469 CGAAGGACCC ACAGAGGGAG AAAGTGGGGA AAATAACTAT TGATCAATTG AAGGTAATTG 66399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGACCC ACAGAGGGAG AAAGTGGGGA AAATAACTAT TGATCAATTG AAGGTAATTG 529 CTCAAGAGAA GTTGCCGGAT CTTAATTGTT CTACTATTGA ATCTGCAATG AGGATAATAG 66459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGAGAA GTTGCCGGAT CTTAATTGTT CTACTATTGA ATCTGCAATG AGGATAATAG 589 CTGGCACTGC AGCAAATATG GGAATTGACA TTGA 66493 |||||||||| |||||||||| |||||||||| |||| CTGGCACTGC AGCAAATATG GGAATTGACA TTGA 623 hqPGS_C08HBa0064M21.1+_SGN-E340144+ (64240 64456,64532 64704,64779 64842,66325 66493) ******************************************************************************** EST sequence 33 +strand 506 n (File: SGN-E254656+) 1 AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCACGGAAA CTCTGTTCCT CGTATTCACC 61 TTTCTCCCTT AAGACGTCAT GGGTCCAACG CGTGTCGGTT CACTTTATTC ACACCCAGAA 121 CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTGACT GTCATTTCCA TGGCCCCCCC 181 TAACCCCGGT GGTGGGGAAG CGAAAAAAGT GACTGGTATT ATAAAGTTAG CTCTCGAGGC 241 ATGGAAGGCA ACCCCAGCTC CACCCGTGGG GCCGGCCTTG GGTTCCAAAG GTGTTAACAT 301 CATGGGATTC TGTAAGGATT ACAATGCCAG AACTGCTGAC AAAGCTGGGT ATGCTATTCC 361 TGTGGAAATC ACCGTCTATG ATGATCGAAG CTTCACTTTT ATCTTGAACA CCCCACCTGC 421 TTCTGATTTG CTGCTCAAGG CTGCAAGAGT GGAAAAAGGC TCGAATGACC CACACAGGGA 481 GAAAGTGGGG AAAATAACTA TTGATC Predicted gene structure (within gDNA segment 63648 to 66994): Exon 1 64248 64456 ( 209 n); cDNA 1 209 ( 209 n); score: 0.938 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 0.92), Pa: 0.993 (s: 0.96) Exon 2 64532 64704 ( 173 n); cDNA 210 382 ( 173 n); score: 0.971 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 0.96), Pa: 0.816 (s: 0.94) Exon 3 64779 64842 ( 64 n); cDNA 383 446 ( 64 n); score: 0.938 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 0.94), Pa: 0.999 (s: 0.94) Exon 4 66325 66384 ( 60 n); cDNA 447 506 ( 60 n); score: 0.950 MATCH C08HBa0064M21.1+ SGN-E254656+ 0.951 506 1.000 C PGS_C08HBa0064M21.1+_SGN-E254656+ (64248 64456,64532 64704,64779 64842,66325 66384) Alignment (genomic DNA sequence = upper lines): AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCAGGGAAA CTCTGTTCCT CGTTTTCACC 64307 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ||| |||||| AAAAATGGCG TCTTTATCGA GTTGTAATCA TCCACGGAAA CTCTGTTCCT CGTATTCACC 60 TTCCTCCCTT AAGTTGTCAT GGGTCCAACG CGTGTCGGTT CAGTTCATTC ACACCCAAAA 64367 || ||||||| ||| ||||| |||||||||| |||||||||| || || |||| ||||||| || TTTCTCCCTT AAGACGTCAT GGGTCCAACG CGTGTCGGTT CACTTTATTC ACACCCAGAA 120 CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTCACT GTCATTTCCA TGGCCCCCCC 64427 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CCACACTTGT TCCCTTCCTT ATGCTCCAAG GGCTCTGACT GTCATTTCCA TGGCCCCCCC 180 TAAGCCCGGT GGTGGTAAAG CGAAGAAAGG TATTATTTTC ACTTTGCTTT TTAAGTTTGG 64487 ||| |||||| ||||| ||| |||| |||| TAACCCCGGT GGTGGGGAAG CGAAAAAAG. .......... .......... .......... 209 GGTTTGAATA TTTTTACTGA TGGGTTGCAT TTTTTTTTGG TCAGTCACTG GTATTATAAA 64547 | |||| |||||||||| .......... .......... .......... .......... ....TGACTG GTATTATAAA 225 GTTAGCTCTC GAGGCAGGGA AGGCAACCCC AGCTCCACCC GTGGGGCCGG CCTTGGGTTC 64607 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGCTCTC GAGGCATGGA AGGCAACCCC AGCTCCACCC GTGGGGCCGG CCTTGGGTTC 285 CAAAGGTGTT AACATCATGG CATTCTGTAA GGATTACAAT GCCAGAACTG CTGACAAAGC 64667 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAAAGGTGTT AACATCATGG GATTCTGTAA GGATTACAAT GCCAGAACTG CTGACAAAGC 345 TGGTTATGTT ATTCCTGTGG AAATCACCGT CTATGATGTC AGTTCTTCAT TTTTATTGCC 64727 ||| |||| | |||||||||| |||||||||| ||||||| TGGGTATGCT ATTCCTGTGG AAATCACCGT CTATGAT... .......... .......... 382 AATTATTAAA ACATGATTAA AGTCTCATTG TGCCTCTTCC TTCTCTTCCA GGATAGAAGC 64787 ||| ||||| .......... .......... .......... .......... .......... .GATCGAAGC 391 TTCACTTTTA TCTTGAAGAC CCCACCTGCT TCTGTTTTGC TGCTCAAGGC TGCAGGTATT 64847 |||||||||| ||||||| || |||||||||| |||| ||||| |||||||||| |||| TTCACTTTTA TCTTGAACAC CCCACCTGCT TCTGATTTGC TGCTCAAGGC TGCAA..... 446 TAGAATTTTT CAGTAAAAAT GTGAAGGTTT AGTTTAGAGG CAAGTCAGGA AAACTAAATG 64907 .......... .......... .......... .......... .......... .......... 446 ATTCATTTAG AGTTAGTTAC CATTTAGCTT GAATATGAAG GACACAAGAA TGTATTTGAT 64967 .......... .......... .......... .......... .......... .......... 446 TTACTGATTG ATGTACGATG CTCAACTTGG TGCTGAATAT ATCAAGCTAG TTTTGGATGA 65027 .......... .......... .......... .......... .......... .......... 446 GTACATCATA TCCTGGCCTA TTACTACCAC ACTCTTGCTT GTTGTTCCAA CATCAGTCAC 65087 .......... .......... .......... .......... .......... .......... 446 CACAGTTGTA TGAGACATAT GGCCACTTCT CTGCCGGAAT TCCATAAATA TTTGCTTGTA 65147 .......... .......... .......... .......... .......... .......... 446 GTTTGAGATC AAGAAATTCA TAAAATCCTC TTTAGCTCTA GACTTATAGA GTACTTATAA 65207 .......... .......... .......... .......... .......... .......... 446 GGACATTAAC ATTTATGACA GCAAGGAAGG TGAAGGGTTA AGCACTCCCC TAAACAATAG 65267 .......... .......... .......... .......... .......... .......... 446 ACACCCTTGA AGACTACCAC TTGATATACT ACCCCATGAT CTTGGCTTGA ATCAGGAACT 65327 .......... .......... .......... .......... .......... .......... 446 AAAACTAGTT TATGCCTGAT ATTAGTTAAC CACCTCACCT GTGCACTTTT TAAACAAAGG 65387 .......... .......... .......... .......... .......... .......... 446 ACGCCTGTGA AGACTACAAC TCGAAGCACT ATCCAATGAT CTTGGCTTGA ATTGGGTATA 65447 .......... .......... .......... .......... .......... .......... 446 AGAACAGGAA ACTTTAGAGT CTTGTTTATG AAAATTTTCC CGCCTTCCAT GATATTTTTC 65507 .......... .......... .......... .......... .......... .......... 446 ATAGTAGGAC GTAGACATGT AAAATTACAG AAAAACTAGA CTGAAAACTC CCTTTTTTTA 65567 .......... .......... .......... .......... .......... .......... 446 AATTTTCCAT GTTGCTCTGC TAGATGGTTG GACAAAAAGG GAGAACGAAA AAAAAAGAAA 65627 .......... .......... .......... .......... .......... .......... 446 TATTGAAATC CGAATTAGAA AAACAGTTGA GACTCTCTTT CTTTCTGGGT GGAGAATGAT 65687 .......... .......... .......... .......... .......... .......... 446 CATATATATA GATGCTCTGG CTGCGGTTTT CTACTCATAG ACTATAGTTC TATGCTAATC 65747 .......... .......... .......... .......... .......... .......... 446 CAAAATAGGC AGTAGATTTA AACATTTCGT GTTTGGAATG GCAAAATCAT TGGGCATGCT 65807 .......... .......... .......... .......... .......... .......... 446 GTCCTTGCTT CAACAAACTA TAGAACTAAA ATGAACTCCT TCGTTATTGT ATAAGCACTG 65867 .......... .......... .......... .......... .......... .......... 446 TTTTTTGGGT TACAGTTGAT TATAATAACA TGAAAGGTAA TTTTTGAAGT AGATAACAGT 65927 .......... .......... .......... .......... .......... .......... 446 GAGTGAAATA AATTTGCTCA AAAAGTTAGA ATATTAGCTT GTTCTACTAG ATGTTTATGC 65987 .......... .......... .......... .......... .......... .......... 446 ATACTGCTGA TATCCCCTTT CTTTGGTATA TGGGGTCAAA CCCCCTGTTT TATTCAGGGA 66047 .......... .......... .......... .......... .......... .......... 446 AAAATGCCAG CACTGACTTG GTGCTTGATC ATTTTGATGA ATAAGATCTT TGCTTATCCC 66107 .......... .......... .......... .......... .......... .......... 446 ATAATAAAAA GTATAATTTC ACAATTTGGA AATCAGGCGT TCAATCAAAA TAATACACCT 66167 .......... .......... .......... .......... .......... .......... 446 TGTAGATGTT AATGTGAACT TGTGCTGGAG TTTAGCTTTT TATGGTGCAG TTACTCTATC 66227 .......... .......... .......... .......... .......... .......... 446 TTTGCTATAG CCTGGTTGTC ATAAAGTTGT GGTGCATACA AAAGTTTGGA TAGTTTCCAA 66287 .......... .......... .......... .......... .......... .......... 446 AGATGTGAAG ATGATTAACT ATTTTATCAC TTTGTAGGAG TGGAAAAGGG CTCGAAGGAC 66347 ||| ||||||| || |||||| ||| .......... .......... .......... .......GAG TGGAAAAAGG CTCGAATGAC 469 CCACAGAGGG AGAAAGTGGG GAAAATAACT ATTGATC 66384 ||||| |||| |||||||||| |||||||||| ||||||| CCACACAGGG AGAAAGTGGG GAAAATAACT ATTGATC 506 hqPGS_C08HBa0064M21.1+_SGN-E254656+ (64248 64456,64532 64704,64779 64842,66325 66384) ******************************************************************************** EST sequence 76 +strand 736 n (File: SGN-E347053+) 1 GTCTTTATCG AGTTGTAATC ATCCAGGGAA ACTCTGTTCC TCGTTTTCAC CTTCCTCCCT 61 TAAGTTGTCA TGGGTCCAAC GCGTGTCGGT TCAGTTCATT CACACCCAAA ACCACACTTG 121 TTCCCTTCCT TATGCTCCAA GGGCTCTCAC TGTCATTTCC ATGGCCCCCC CTAAGCCCGG 181 TGGTGGTAAA GCGAAGAAAG TCACTGGTAT TATAAAGTTA GCTCTCGAGG CAGGGAAGGC 241 AACCCCAGCT CCACCCGTGG GGCCGGCCTT GGGTTCCAAA GGTGTTAACA TCATGGCATT 301 CTGTAAGGAT TACAATGCCA GAACTGCTGA CAAAGCTGGT TATGTTATTC CTGTGGAAAT 361 CACCGTCTAT GATGATAGAA GCTTCACTTT TATCTTGAAG ACCCCACCTG CTTCTGTTTT 421 GCTGCTCAAG GCTGCAGGAG TGGAAAAGGG CTCGAAGGAC CCACAGAGGG AGAAAGTGGG 481 GAAAATAACT ATTGATCAAT TGAAGGTAAT TGCTCAAGAG AAGTTGCCGG ATCTTAATTG 541 TTCTACTATT GAATCTGCAA TGAGGATAAT AGCTGGCACT GCAGCAAATA TGGGAATTGA 601 CATTGACCCT CCGATTCTTG GACCTAAAAA GAAAGAACTT GTGTACTAGT TATGCCTTTT 661 CTATTCCCAT GTAATGTATC CAAGTATTTA GAAGCAAAAA GATTGGAAGA GAAGTAGATT 721 GACTTGAGAT AACCTT Predicted gene structure (within gDNA segment 63657 to 67234): Exon 1 64257 64456 ( 200 n); cDNA 1 200 ( 200 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 201 373 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 374 437 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66624 ( 300 n); cDNA 438 736 ( 299 n); score: 0.982 MATCH C08HBa0064M21.1+ SGN-E347053+ 0.993 737 1.001 C PGS_C08HBa0064M21.1+_SGN-E347053+ (64257 64456,64532 64704,64779 64842,66325 66624) Alignment (genomic DNA sequence = upper lines): GTCTTTATCG AGTTGTAATC ATCCAGGGAA ACTCTGTTCC TCGTTTTCAC CTTCCTCCCT 64316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTTATCG AGTTGTAATC ATCCAGGGAA ACTCTGTTCC TCGTTTTCAC CTTCCTCCCT 60 TAAGTTGTCA TGGGTCCAAC GCGTGTCGGT TCAGTTCATT CACACCCAAA ACCACACTTG 64376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTGTCA TGGGTCCAAC GCGTGTCGGT TCAGTTCATT CACACCCAAA ACCACACTTG 120 TTCCCTTCCT TATGCTCCAA GGGCTCTCAC TGTCATTTCC ATGGCCCCCC CTAAGCCCGG 64436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCTTCCT TATGCTCCAA GGGCTCTCAC TGTCATTTCC ATGGCCCCCC CTAAGCCCGG 180 TGGTGGTAAA GCGAAGAAAG GTATTATTTT CACTTTGCTT TTTAAGTTTG GGGTTTGAAT 64496 |||||||||| |||||||||| TGGTGGTAAA GCGAAGAAAG .......... .......... .......... .......... 200 ATTTTTACTG ATGGGTTGCA TTTTTTTTTG GTCAGTCACT GGTATTATAA AGTTAGCTCT 64556 ||||| |||||||||| |||||||||| .......... .......... .......... .....TCACT GGTATTATAA AGTTAGCTCT 225 CGAGGCAGGG AAGGCAACCC CAGCTCCACC CGTGGGGCCG GCCTTGGGTT CCAAAGGTGT 64616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGCAGGG AAGGCAACCC CAGCTCCACC CGTGGGGCCG GCCTTGGGTT CCAAAGGTGT 285 TAACATCATG GCATTCTGTA AGGATTACAA TGCCAGAACT GCTGACAAAG CTGGTTATGT 64676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACATCATG GCATTCTGTA AGGATTACAA TGCCAGAACT GCTGACAAAG CTGGTTATGT 345 TATTCCTGTG GAAATCACCG TCTATGATGT CAGTTCTTCA TTTTTATTGC CAATTATTAA 64736 |||||||||| |||||||||| |||||||| TATTCCTGTG GAAATCACCG TCTATGAT.. .......... .......... .......... 373 AACATGATTA AAGTCTCATT GTGCCTCTTC CTTCTCTTCC AGGATAGAAG CTTCACTTTT 64796 |||||||| |||||||||| .......... .......... .......... .......... ..GATAGAAG CTTCACTTTT 391 ATCTTGAAGA CCCCACCTGC TTCTGTTTTG CTGCTCAAGG CTGCAGGTAT TTAGAATTTT 64856 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATCTTGAAGA CCCCACCTGC TTCTGTTTTG CTGCTCAAGG CTGCAG.... .......... 437 TCAGTAAAAA TGTGAAGGTT TAGTTTAGAG GCAAGTCAGG AAAACTAAAT GATTCATTTA 64916 .......... .......... .......... .......... .......... .......... 437 GAGTTAGTTA CCATTTAGCT TGAATATGAA GGACACAAGA ATGTATTTGA TTTACTGATT 64976 .......... .......... .......... .......... .......... .......... 437 GATGTACGAT GCTCAACTTG GTGCTGAATA TATCAAGCTA GTTTTGGATG AGTACATCAT 65036 .......... .......... .......... .......... .......... .......... 437 ATCCTGGCCT ATTACTACCA CACTCTTGCT TGTTGTTCCA ACATCAGTCA CCACAGTTGT 65096 .......... .......... .......... .......... .......... .......... 437 ATGAGACATA TGGCCACTTC TCTGCCGGAA TTCCATAAAT ATTTGCTTGT AGTTTGAGAT 65156 .......... .......... .......... .......... .......... .......... 437 CAAGAAATTC ATAAAATCCT CTTTAGCTCT AGACTTATAG AGTACTTATA AGGACATTAA 65216 .......... .......... .......... .......... .......... .......... 437 CATTTATGAC AGCAAGGAAG GTGAAGGGTT AAGCACTCCC CTAAACAATA GACACCCTTG 65276 .......... .......... .......... .......... .......... .......... 437 AAGACTACCA CTTGATATAC TACCCCATGA TCTTGGCTTG AATCAGGAAC TAAAACTAGT 65336 .......... .......... .......... .......... .......... .......... 437 TTATGCCTGA TATTAGTTAA CCACCTCACC TGTGCACTTT TTAAACAAAG GACGCCTGTG 65396 .......... .......... .......... .......... .......... .......... 437 AAGACTACAA CTCGAAGCAC TATCCAATGA TCTTGGCTTG AATTGGGTAT AAGAACAGGA 65456 .......... .......... .......... .......... .......... .......... 437 AACTTTAGAG TCTTGTTTAT GAAAATTTTC CCGCCTTCCA TGATATTTTT CATAGTAGGA 65516 .......... .......... .......... .......... .......... .......... 437 CGTAGACATG TAAAATTACA GAAAAACTAG ACTGAAAACT CCCTTTTTTT AAATTTTCCA 65576 .......... .......... .......... .......... .......... .......... 437 TGTTGCTCTG CTAGATGGTT GGACAAAAAG GGAGAACGAA AAAAAAAGAA ATATTGAAAT 65636 .......... .......... .......... .......... .......... .......... 437 CCGAATTAGA AAAACAGTTG AGACTCTCTT TCTTTCTGGG TGGAGAATGA TCATATATAT 65696 .......... .......... .......... .......... .......... .......... 437 AGATGCTCTG GCTGCGGTTT TCTACTCATA GACTATAGTT CTATGCTAAT CCAAAATAGG 65756 .......... .......... .......... .......... .......... .......... 437 CAGTAGATTT AAACATTTCG TGTTTGGAAT GGCAAAATCA TTGGGCATGC TGTCCTTGCT 65816 .......... .......... .......... .......... .......... .......... 437 TCAACAAACT ATAGAACTAA AATGAACTCC TTCGTTATTG TATAAGCACT GTTTTTTGGG 65876 .......... .......... .......... .......... .......... .......... 437 TTACAGTTGA TTATAATAAC ATGAAAGGTA ATTTTTGAAG TAGATAACAG TGAGTGAAAT 65936 .......... .......... .......... .......... .......... .......... 437 AAATTTGCTC AAAAAGTTAG AATATTAGCT TGTTCTACTA GATGTTTATG CATACTGCTG 65996 .......... .......... .......... .......... .......... .......... 437 ATATCCCCTT TCTTTGGTAT ATGGGGTCAA ACCCCCTGTT TTATTCAGGG AAAAATGCCA 66056 .......... .......... .......... .......... .......... .......... 437 GCACTGACTT GGTGCTTGAT CATTTTGATG AATAAGATCT TTGCTTATCC CATAATAAAA 66116 .......... .......... .......... .......... .......... .......... 437 AGTATAATTT CACAATTTGG AAATCAGGCG TTCAATCAAA ATAATACACC TTGTAGATGT 66176 .......... .......... .......... .......... .......... .......... 437 TAATGTGAAC TTGTGCTGGA GTTTAGCTTT TTATGGTGCA GTTACTCTAT CTTTGCTATA 66236 .......... .......... .......... .......... .......... .......... 437 GCCTGGTTGT CATAAAGTTG TGGTGCATAC AAAAGTTTGG ATAGTTTCCA AAGATGTGAA 66296 .......... .......... .......... .......... .......... .......... 437 GATGATTAAC TATTTTATCA CTTTGTAGGA GTGGAAAAGG GCTCGAAGGA CCCACAGAGG 66356 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GTGGAAAAGG GCTCGAAGGA CCCACAGAGG 469 GAGAAAGTGG GGAAAATAAC TATTGATCAA TTGAAGGTAA TTGCTCAAGA GAAGTTGCCG 66416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGTGG GGAAAATAAC TATTGATCAA TTGAAGGTAA TTGCTCAAGA GAAGTTGCCG 529 GATCTTAATT GTTCTACTAT TGAATCTGCA ATGAGGATAA TAGCTGGCAC TGCAGCAAAT 66476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTAATT GTTCTACTAT TGAATCTGCA ATGAGGATAA TAGCTGGCAC TGCAGCAAAT 589 ATGGGAATTG ACATTGACCC TCCGATTCTT GAACCTAAAA AGAAAGAACT TGTGTACTAG 66536 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATGGGAATTG ACATTGACCC TCCGATTCTT GGACCTAAAA AGAAAGAACT TGTGTACTAG 649 TTATGCCTTT TCTATTCCCA TGTAATGTAT CCAAGTA-TT AGAAGCAAAA AAGAATTGGA 66595 |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| ||| |||||| TTATGCCTTT TCTATTCCCA TGTAATGTAT CCAAGTATTT AGAAGC-AAA AAG-ATTGGA 707 AGAGAAGTAG ATTGACTTGA GATAACCTT 66624 |||||||||| |||||||||| ||||||||| AGAGAAGTAG ATTGACTTGA GATAACCTT 736 hqPGS_C08HBa0064M21.1+_SGN-E347053+ (64257 64456,64532 64704,64779 64842,66325 66624) ******************************************************************************** EST sequence 40 +strand 390 n (File: SGN-E289560+) 1 CTTTATCGAG TTGTAATCAT CCAGGGAAAC TCTGTTCCTC GTTTTCACCT TCCTCCCTTA 61 AGTTGTCATG GGTCCAACGC GTGTCGGTTC AGTTCATTCA CACCCAAAAC CACACTTGTT 121 CCCTTCCTTA TGCTCCAAGG GCTCTCACTG TCATTTCCAT GGCCCCCCCT AAGCCCGGTG 181 GTGGTAAAGC GAAGAAAGTC ACTGGTATTA TAAAGTTAGC TCTCGAGGCA GGGAAGGCAA 241 CCCCAGCTCC ACCCGTGGGG CCGGCCTTGG GTTCCAAAGG TGTTAACATC ATGGCATTCT 301 GTAAGGATTA CAATGCCAGA ACTGCTGACA AAGCTGGTTA TGTTATTCCT GTGGAAATCA 361 CCGTCTATGA TGATAGAAGC TTCACTTTTA Predicted gene structure (within gDNA segment 63659 to 65495): Exon 1 64259 64456 ( 198 n); cDNA 1 198 ( 198 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 199 371 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 0) Exon 3 64779 64797 ( 19 n); cDNA 372 390 ( 19 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E289560+ 1.000 390 1.000 C PGS_C08HBa0064M21.1+_SGN-E289560+ (64259 64456,64532 64704,64779 64797) Alignment (genomic DNA sequence = upper lines): CTTTATCGAG TTGTAATCAT CCAGGGAAAC TCTGTTCCTC GTTTTCACCT TCCTCCCTTA 64318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTATCGAG TTGTAATCAT CCAGGGAAAC TCTGTTCCTC GTTTTCACCT TCCTCCCTTA 60 AGTTGTCATG GGTCCAACGC GTGTCGGTTC AGTTCATTCA CACCCAAAAC CACACTTGTT 64378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTCATG GGTCCAACGC GTGTCGGTTC AGTTCATTCA CACCCAAAAC CACACTTGTT 120 CCCTTCCTTA TGCTCCAAGG GCTCTCACTG TCATTTCCAT GGCCCCCCCT AAGCCCGGTG 64438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTCCTTA TGCTCCAAGG GCTCTCACTG TCATTTCCAT GGCCCCCCCT AAGCCCGGTG 180 GTGGTAAAGC GAAGAAAGGT ATTATTTTCA CTTTGCTTTT TAAGTTTGGG GTTTGAATAT 64498 |||||||||| |||||||| GTGGTAAAGC GAAGAAAG.. .......... .......... .......... .......... 198 TTTTACTGAT GGGTTGCATT TTTTTTTGGT CAGTCACTGG TATTATAAAG TTAGCTCTCG 64558 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TCACTGG TATTATAAAG TTAGCTCTCG 225 AGGCAGGGAA GGCAACCCCA GCTCCACCCG TGGGGCCGGC CTTGGGTTCC AAAGGTGTTA 64618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAGGGAA GGCAACCCCA GCTCCACCCG TGGGGCCGGC CTTGGGTTCC AAAGGTGTTA 285 ACATCATGGC ATTCTGTAAG GATTACAATG CCAGAACTGC TGACAAAGCT GGTTATGTTA 64678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCATGGC ATTCTGTAAG GATTACAATG CCAGAACTGC TGACAAAGCT GGTTATGTTA 345 TTCCTGTGGA AATCACCGTC TATGATGTCA GTTCTTCATT TTTATTGCCA ATTATTAAAA 64738 |||||||||| |||||||||| |||||| TTCCTGTGGA AATCACCGTC TATGAT.... .......... .......... .......... 371 CATGATTAAA GTCTCATTGT GCCTCTTCCT TCTCTTCCAG GATAGAAGCT TCACTTTTA 64797 |||||||||| ||||||||| .......... .......... .......... .......... GATAGAAGCT TCACTTTTA 390 hqPGS_C08HBa0064M21.1+_SGN-E289560+ (64259 64456,64532 64704,64779 64797) ******************************************************************************** EST sequence 78 +strand 674 n (File: SGN-E347291+) 1 AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG GTGGTGGTAA AGCGAAGAAA 61 GTCACTGGTA TTATAAAGTT AGCTCTCGAG GCAGGGAAGG CAACCCCAGC TCCACCCGTG 121 GGGCCGGCCT TGGGTTCCAA AGGTGTTAAC ATCATGGCAT TCTGTAAGGA TTACAATGCC 181 AGAACTGCTG ACAAAGCTGG TTATGTTATT CCTGTGGAAA TCACCGTCTA TGATGATAGA 241 AGCTTCACTT TTATCTTGAA GACCCCACCT GCTTCTGTTT TGCTGCTCAA GGCTGCAGGA 301 GTGGAAAAGG GCTCGAAGGA CCCACAGAGG GAGAAAGTGG GGAAAATAAC TATTGATCAA 361 TTGAAGGTAA TTGCTCAAGA GAAGTTGCCG GATCTTAATT GTTCTACTAT TGAATCTGCA 421 ATGAGGATAA TAGCTGGCAC TGCAGCAAAT ATGGGAATTG ACATTGACCC TCCGATTCTT 481 GAACCTAAAA AGAAAGAACT TGTGTACTAG TTATGCCTTT TCTATTCCCA TGTAATGTAT 541 CCAAGTATTA GAAGCAAAAA AGAATTGGAA GAGAAGTAGA TTGACTTGAG ATAACCTTTT 601 ATCCGTTTGT TTCAATTCTT TGGACTCTTC ATTCTTTAAT TATGATGAAT ACACCATTCT 661 CTAGTGAAAA AAAA Predicted gene structure (within gDNA segment 63796 to 67382): Exon 1 64396 64456 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 64532 64704 ( 173 n); cDNA 62 234 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 (s: 1.00), Pa: 0.816 (s: 1.00) Exon 3 64779 64842 ( 64 n); cDNA 235 298 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 66325 66695 ( 371 n); cDNA 299 669 ( 371 n); score: 0.997 MATCH C08HBa0064M21.1+ SGN-E347291+ 0.999 669 0.993 C PGS_C08HBa0064M21.1+_SGN-E347291+ (64396 64456,64532 64704,64779 64842,66325 66695) Alignment (genomic DNA sequence = upper lines): AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG GTGGTGGTAA AGCGAAGAAA 64455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTCTCA CTGTCATTTC CATGGCCCCC CCTAAGCCCG GTGGTGGTAA AGCGAAGAAA 60 GGTATTATTT TCACTTTGCT TTTTAAGTTT GGGGTTTGAA TATTTTTACT GATGGGTTGC 64515 | G......... .......... .......... .......... .......... .......... 61 ATTTTTTTTT GGTCAGTCAC TGGTATTATA AAGTTAGCTC TCGAGGCAGG GAAGGCAACC 64575 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TCAC TGGTATTATA AAGTTAGCTC TCGAGGCAGG GAAGGCAACC 105 CCAGCTCCAC CCGTGGGGCC GGCCTTGGGT TCCAAAGGTG TTAACATCAT GGCATTCTGT 64635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTCCAC CCGTGGGGCC GGCCTTGGGT TCCAAAGGTG TTAACATCAT GGCATTCTGT 165 AAGGATTACA ATGCCAGAAC TGCTGACAAA GCTGGTTATG TTATTCCTGT GGAAATCACC 64695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGATTACA ATGCCAGAAC TGCTGACAAA GCTGGTTATG TTATTCCTGT GGAAATCACC 225 GTCTATGATG TCAGTTCTTC ATTTTTATTG CCAATTATTA AAACATGATT AAAGTCTCAT 64755 ||||||||| GTCTATGAT. .......... .......... .......... .......... .......... 234 TGTGCCTCTT CCTTCTCTTC CAGGATAGAA GCTTCACTTT TATCTTGAAG ACCCCACCTG 64815 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GATAGAA GCTTCACTTT TATCTTGAAG ACCCCACCTG 271 CTTCTGTTTT GCTGCTCAAG GCTGCAGGTA TTTAGAATTT TTCAGTAAAA ATGTGAAGGT 64875 |||||||||| |||||||||| ||||||| CTTCTGTTTT GCTGCTCAAG GCTGCAG... .......... .......... .......... 298 TTAGTTTAGA GGCAAGTCAG GAAAACTAAA TGATTCATTT AGAGTTAGTT ACCATTTAGC 64935 .......... .......... .......... .......... .......... .......... 298 TTGAATATGA AGGACACAAG AATGTATTTG ATTTACTGAT TGATGTACGA TGCTCAACTT 64995 .......... .......... .......... .......... .......... .......... 298 GGTGCTGAAT ATATCAAGCT AGTTTTGGAT GAGTACATCA TATCCTGGCC TATTACTACC 65055 .......... .......... .......... .......... .......... .......... 298 ACACTCTTGC TTGTTGTTCC AACATCAGTC ACCACAGTTG TATGAGACAT ATGGCCACTT 65115 .......... .......... .......... .......... .......... .......... 298 CTCTGCCGGA ATTCCATAAA TATTTGCTTG TAGTTTGAGA TCAAGAAATT CATAAAATCC 65175 .......... .......... .......... .......... .......... .......... 298 TCTTTAGCTC TAGACTTATA GAGTACTTAT AAGGACATTA ACATTTATGA CAGCAAGGAA 65235 .......... .......... .......... .......... .......... .......... 298 GGTGAAGGGT TAAGCACTCC CCTAAACAAT AGACACCCTT GAAGACTACC ACTTGATATA 65295 .......... .......... .......... .......... .......... .......... 298 CTACCCCATG ATCTTGGCTT GAATCAGGAA CTAAAACTAG TTTATGCCTG ATATTAGTTA 65355 .......... .......... .......... .......... .......... .......... 298 ACCACCTCAC CTGTGCACTT TTTAAACAAA GGACGCCTGT GAAGACTACA ACTCGAAGCA 65415 .......... .......... .......... .......... .......... .......... 298 CTATCCAATG ATCTTGGCTT GAATTGGGTA TAAGAACAGG AAACTTTAGA GTCTTGTTTA 65475 .......... .......... .......... .......... .......... .......... 298 TGAAAATTTT CCCGCCTTCC ATGATATTTT TCATAGTAGG ACGTAGACAT GTAAAATTAC 65535 .......... .......... .......... .......... .......... .......... 298 AGAAAAACTA GACTGAAAAC TCCCTTTTTT TAAATTTTCC ATGTTGCTCT GCTAGATGGT 65595 .......... .......... .......... .......... .......... .......... 298 TGGACAAAAA GGGAGAACGA AAAAAAAAGA AATATTGAAA TCCGAATTAG AAAAACAGTT 65655 .......... .......... .......... .......... .......... .......... 298 GAGACTCTCT TTCTTTCTGG GTGGAGAATG ATCATATATA TAGATGCTCT GGCTGCGGTT 65715 .......... .......... .......... .......... .......... .......... 298 TTCTACTCAT AGACTATAGT TCTATGCTAA TCCAAAATAG GCAGTAGATT TAAACATTTC 65775 .......... .......... .......... .......... .......... .......... 298 GTGTTTGGAA TGGCAAAATC ATTGGGCATG CTGTCCTTGC TTCAACAAAC TATAGAACTA 65835 .......... .......... .......... .......... .......... .......... 298 AAATGAACTC CTTCGTTATT GTATAAGCAC TGTTTTTTGG GTTACAGTTG ATTATAATAA 65895 .......... .......... .......... .......... .......... .......... 298 CATGAAAGGT AATTTTTGAA GTAGATAACA GTGAGTGAAA TAAATTTGCT CAAAAAGTTA 65955 .......... .......... .......... .......... .......... .......... 298 GAATATTAGC TTGTTCTACT AGATGTTTAT GCATACTGCT GATATCCCCT TTCTTTGGTA 66015 .......... .......... .......... .......... .......... .......... 298 TATGGGGTCA AACCCCCTGT TTTATTCAGG GAAAAATGCC AGCACTGACT TGGTGCTTGA 66075 .......... .......... .......... .......... .......... .......... 298 TCATTTTGAT GAATAAGATC TTTGCTTATC CCATAATAAA AAGTATAATT TCACAATTTG 66135 .......... .......... .......... .......... .......... .......... 298 GAAATCAGGC GTTCAATCAA AATAATACAC CTTGTAGATG TTAATGTGAA CTTGTGCTGG 66195 .......... .......... .......... .......... .......... .......... 298 AGTTTAGCTT TTTATGGTGC AGTTACTCTA TCTTTGCTAT AGCCTGGTTG TCATAAAGTT 66255 .......... .......... .......... .......... .......... .......... 298 GTGGTGCATA CAAAAGTTTG GATAGTTTCC AAAGATGTGA AGATGATTAA CTATTTTATC 66315 .......... .......... .......... .......... .......... .......... 298 ACTTTGTAGG AGTGGAAAAG GGCTCGAAGG ACCCACAGAG GGAGAAAGTG GGGAAAATAA 66375 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AGTGGAAAAG GGCTCGAAGG ACCCACAGAG GGAGAAAGTG GGGAAAATAA 349 CTATTGATCA ATTGAAGGTA ATTGCTCAAG AGAAGTTGCC GGATCTTAAT TGTTCTACTA 66435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGATCA ATTGAAGGTA ATTGCTCAAG AGAAGTTGCC GGATCTTAAT TGTTCTACTA 409 TTGAATCTGC AATGAGGATA ATAGCTGGCA CTGCAGCAAA TATGGGAATT GACATTGACC 66495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATCTGC AATGAGGATA ATAGCTGGCA CTGCAGCAAA TATGGGAATT GACATTGACC 469 CTCCGATTCT TGAACCTAAA AAGAAAGAAC TTGTGTACTA GTTATGCCTT TTCTATTCCC 66555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGATTCT TGAACCTAAA AAGAAAGAAC TTGTGTACTA GTTATGCCTT TTCTATTCCC 529 ATGTAATGTA TCCAAGTATT AGAAGCAAAA AAGAATTGGA AGAGAAGTAG ATTGACTTGA 66615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAATGTA TCCAAGTATT AGAAGCAAAA AAGAATTGGA AGAGAAGTAG ATTGACTTGA 589 GATAACCTTT TATCCGTTTG TTTCAATTCT TTGGACTCTT CATTCTTTAA TTATGATGAA 66675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACCTTT TATCCGTTTG TTTCAATTCT TTGGACTCTT CATTCTTTAA TTATGATGAA 649 TACACCATTC TCTAGTGCAA 66695 |||||||||| ||||||| || TACACCATTC TCTAGTGAAA 669 hqPGS_C08HBa0064M21.1+_SGN-E347291+ (64396 64456,64532 64704,64779 64842,66325 66695) ******************************************************************************** EST sequence 27 +strand 362 n (File: SGN-E552591+) 1 AGAAGCTTCA CTTTTATCTT GAAGACCCCA CCTGCTTCTG TTTTGCTGCT CAAGGCTGCA 61 GGAGTGGAAA AGGGCTCGAA GGACCCACAG AGGGAGAAAG TGGGGAAAAT AACTATTGAT 121 CAATTGAAGG TAATTGCTCA AGAGAAGTTG CCGGATCTTA ATTGTTCTAC TATTGAATCT 181 GCAATGAGGA TAATAGCTGG CACTGCAGCA AATATGGGAA TTGACATTGA CCCTCCGATT 241 CTTGAACCTA AAAAGAAAGA ACTTGTGTAC TAGTTATGCC TTTTCTATTC CCATGTAATG 301 TATCCAAGTA TTAGAAGCAA AAAAGAATTG GAAGAGAAAA AAAAAAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 64182 to 67451): Exon 1 64782 64842 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 64843 66324 (1482 n); Pd: 0.949 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 66325 66601 ( 277 n); cDNA 62 338 ( 277 n); score: 1.000 Intron 2 66602 66720 ( 119 n); Pd: 0.000 (s: 1.00), Pa: 0.852 (s: 0) Exon 3 66721 66742 ( 22 n); cDNA 339 360 ( 22 n); score: 0.500 MATCH C08HBa0064M21.1+ SGN-E552591+ 1.000 360 0.994 C PGS_C08HBa0064M21.1+_SGN-E552591+ (64782 64842,66325 66601,66721 66742) Alignment (genomic DNA sequence = upper lines): AGAAGCTTCA CTTTTATCTT GAAGACCCCA CCTGCTTCTG TTTTGCTGCT CAAGGCTGCA 64841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTTCA CTTTTATCTT GAAGACCCCA CCTGCTTCTG TTTTGCTGCT CAAGGCTGCA 60 GGTATTTAGA ATTTTTCAGT AAAAATGTGA AGGTTTAGTT TAGAGGCAAG TCAGGAAAAC 64901 | G......... .......... .......... .......... .......... .......... 61 TAAATGATTC ATTTAGAGTT AGTTACCATT TAGCTTGAAT ATGAAGGACA CAAGAATGTA 64961 .......... .......... .......... .......... .......... .......... 61 TTTGATTTAC TGATTGATGT ACGATGCTCA ACTTGGTGCT GAATATATCA AGCTAGTTTT 65021 .......... .......... .......... .......... .......... .......... 61 GGATGAGTAC ATCATATCCT GGCCTATTAC TACCACACTC TTGCTTGTTG TTCCAACATC 65081 .......... .......... .......... .......... .......... .......... 61 AGTCACCACA GTTGTATGAG ACATATGGCC ACTTCTCTGC CGGAATTCCA TAAATATTTG 65141 .......... .......... .......... .......... .......... .......... 61 CTTGTAGTTT GAGATCAAGA AATTCATAAA ATCCTCTTTA GCTCTAGACT TATAGAGTAC 65201 .......... .......... .......... .......... .......... .......... 61 TTATAAGGAC ATTAACATTT ATGACAGCAA GGAAGGTGAA GGGTTAAGCA CTCCCCTAAA 65261 .......... .......... .......... .......... .......... .......... 61 CAATAGACAC CCTTGAAGAC TACCACTTGA TATACTACCC CATGATCTTG GCTTGAATCA 65321 .......... .......... .......... .......... .......... .......... 61 GGAACTAAAA CTAGTTTATG CCTGATATTA GTTAACCACC TCACCTGTGC ACTTTTTAAA 65381 .......... .......... .......... .......... .......... .......... 61 CAAAGGACGC CTGTGAAGAC TACAACTCGA AGCACTATCC AATGATCTTG GCTTGAATTG 65441 .......... .......... .......... .......... .......... .......... 61 GGTATAAGAA CAGGAAACTT TAGAGTCTTG TTTATGAAAA TTTTCCCGCC TTCCATGATA 65501 .......... .......... .......... .......... .......... .......... 61 TTTTTCATAG TAGGACGTAG ACATGTAAAA TTACAGAAAA ACTAGACTGA AAACTCCCTT 65561 .......... .......... .......... .......... .......... .......... 61 TTTTTAAATT TTCCATGTTG CTCTGCTAGA TGGTTGGACA AAAAGGGAGA ACGAAAAAAA 65621 .......... .......... .......... .......... .......... .......... 61 AAGAAATATT GAAATCCGAA TTAGAAAAAC AGTTGAGACT CTCTTTCTTT CTGGGTGGAG 65681 .......... .......... .......... .......... .......... .......... 61 AATGATCATA TATATAGATG CTCTGGCTGC GGTTTTCTAC TCATAGACTA TAGTTCTATG 65741 .......... .......... .......... .......... .......... .......... 61 CTAATCCAAA ATAGGCAGTA GATTTAAACA TTTCGTGTTT GGAATGGCAA AATCATTGGG 65801 .......... .......... .......... .......... .......... .......... 61 CATGCTGTCC TTGCTTCAAC AAACTATAGA ACTAAAATGA ACTCCTTCGT TATTGTATAA 65861 .......... .......... .......... .......... .......... .......... 61 GCACTGTTTT TTGGGTTACA GTTGATTATA ATAACATGAA AGGTAATTTT TGAAGTAGAT 65921 .......... .......... .......... .......... .......... .......... 61 AACAGTGAGT GAAATAAATT TGCTCAAAAA GTTAGAATAT TAGCTTGTTC TACTAGATGT 65981 .......... .......... .......... .......... .......... .......... 61 TTATGCATAC TGCTGATATC CCCTTTCTTT GGTATATGGG GTCAAACCCC CTGTTTTATT 66041 .......... .......... .......... .......... .......... .......... 61 CAGGGAAAAA TGCCAGCACT GACTTGGTGC TTGATCATTT TGATGAATAA GATCTTTGCT 66101 .......... .......... .......... .......... .......... .......... 61 TATCCCATAA TAAAAAGTAT AATTTCACAA TTTGGAAATC AGGCGTTCAA TCAAAATAAT 66161 .......... .......... .......... .......... .......... .......... 61 ACACCTTGTA GATGTTAATG TGAACTTGTG CTGGAGTTTA GCTTTTTATG GTGCAGTTAC 66221 .......... .......... .......... .......... .......... .......... 61 TCTATCTTTG CTATAGCCTG GTTGTCATAA AGTTGTGGTG CATACAAAAG TTTGGATAGT 66281 .......... .......... .......... .......... .......... .......... 61 TTCCAAAGAT GTGAAGATGA TTAACTATTT TATCACTTTG TAGGAGTGGA AAAGGGCTCG 66341 ||||||| |||||||||| .......... .......... .......... .......... ...GAGTGGA AAAGGGCTCG 78 AAGGACCCAC AGAGGGAGAA AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTGCT 66401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGACCCAC AGAGGGAGAA AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTGCT 138 CAAGAGAAGT TGCCGGATCT TAATTGTTCT ACTATTGAAT CTGCAATGAG GATAATAGCT 66461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGAAGT TGCCGGATCT TAATTGTTCT ACTATTGAAT CTGCAATGAG GATAATAGCT 198 GGCACTGCAG CAAATATGGG AATTGACATT GACCCTCCGA TTCTTGAACC TAAAAAGAAA 66521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACTGCAG CAAATATGGG AATTGACATT GACCCTCCGA TTCTTGAACC TAAAAAGAAA 258 GAACTTGTGT ACTAGTTATG CCTTTTCTAT TCCCATGTAA TGTATCCAAG TATTAGAAGC 66581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTGTGT ACTAGTTATG CCTTTTCTAT TCCCATGTAA TGTATCCAAG TATTAGAAGC 318 AAAAAAGAAT TGGAAGAGAA GTAGATTGAC TTGAGATAAC CTTTTATCCG TTTGTTTCAA 66641 |||||||||| |||||||||| AAAAAAGAAT TGGAAGAGAA .......... .......... .......... .......... 338 TTCTTTGGAC TCTTCATTCT TTAATTATGA TGAATACACC ATTCTCTAGT GCAAGATGCC 66701 .......... .......... .......... .......... .......... .......... 338 AATCCAACTT TTTGTCCAGG TGCCATAAAT TGAAGAAGAA A 66742 | ||| || || || | .......... .........A AAAAAAAAAA AAAAAAAAAA A 360 hqPGS_C08HBa0064M21.1+_SGN-E552591+ (64782 64842,66325 66601,66721 66742) ******************************************************************************** EST sequence 28 +strand 767 n (File: SGN-E317365+) 1 AATGATCATA TATATAGATG CTCTGGCTGC GGTTTTCTAC TCATAGACTA TAGTTCTATG 61 CTAATCCAAA ATAGGCAGTA GATTTAAACA TTTCGTGTTT GGAATGGCAA AATCATTGGG 121 CATGCTGTCC TTGCTTCAAC AAACTATAGA ACTAAAATGA ACTCCTTCGT TATTGTATAA 181 GCACTGTTTT TTGGGTTACA GTTGATTATA ATAACATGAA AGGTAATTTT TGAAGTAGAT 241 AACAGTGAGT GAAATAAATT TGCTCAAAAA GTTAGAATAT TAGCTTGTTC TACTAGATGT 301 TTATGCATAC TGCTGATATC CCCTTTCTTT GGTATATGGG GTCAAACCCC CTGTTTTATT 361 CAGGGAAAAA TGCCAGCACT GACTTGGTGC TTGATCATTT TGATGAATAA GATCTTTGCT 421 TATCCCATAA TAAAAAGTAT AATTTCACAA TTTGGAAATC AGGCGTTCAA TCAAAATAAT 481 ACACCTTGTA GATGTTAATG TGAACTTGTG CTGGAGTTTA GCTTTTTATG GTGCAGTTAC 541 TCTATCTTTG CTATAGCCTG GTTGTCATAA AGTTGTGGTG CATACAAAAG TTTGGATAGT 601 TTCCAAAGAT GTGAAGATGA TTAACTATTT TATCACTTTG TAGGAGTGGA AAAGGGCTCG 661 AAGGACCCAC AGAGGGAGAA AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTTGC 721 TCAGAAAAGT TGCCNGGATC TTAATTGTTC TACTATTGAA TCTGCAA Predicted gene structure (within gDNA segment 65082 to 67057): Exon 1 65682 66447 ( 766 n); cDNA 1 767 ( 767 n); score: 0.991 MATCH C08HBa0064M21.1+ SGN-E317365+ 0.991 766 0.999 C PGS_C08HBa0064M21.1+_SGN-E317365+ (65682 66447) Alignment (genomic DNA sequence = upper lines): AATGATCATA TATATAGATG CTCTGGCTGC GGTTTTCTAC TCATAGACTA TAGTTCTATG 65741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGATCATA TATATAGATG CTCTGGCTGC GGTTTTCTAC TCATAGACTA TAGTTCTATG 60 CTAATCCAAA ATAGGCAGTA GATTTAAACA TTTCGTGTTT GGAATGGCAA AATCATTGGG 65801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATCCAAA ATAGGCAGTA GATTTAAACA TTTCGTGTTT GGAATGGCAA AATCATTGGG 120 CATGCTGTCC TTGCTTCAAC AAACTATAGA ACTAAAATGA ACTCCTTCGT TATTGTATAA 65861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCTGTCC TTGCTTCAAC AAACTATAGA ACTAAAATGA ACTCCTTCGT TATTGTATAA 180 GCACTGTTTT TTGGGTTACA GTTGATTATA ATAACATGAA AGGTAATTTT TGAAGTAGAT 65921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTGTTTT TTGGGTTACA GTTGATTATA ATAACATGAA AGGTAATTTT TGAAGTAGAT 240 AACAGTGAGT GAAATAAATT TGCTCAAAAA GTTAGAATAT TAGCTTGTTC TACTAGATGT 65981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGTGAGT GAAATAAATT TGCTCAAAAA GTTAGAATAT TAGCTTGTTC TACTAGATGT 300 TTATGCATAC TGCTGATATC CCCTTTCTTT GGTATATGGG GTCAAACCCC CTGTTTTATT 66041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGCATAC TGCTGATATC CCCTTTCTTT GGTATATGGG GTCAAACCCC CTGTTTTATT 360 CAGGGAAAAA TGCCAGCACT GACTTGGTGC TTGATCATTT TGATGAATAA GATCTTTGCT 66101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGAAAAA TGCCAGCACT GACTTGGTGC TTGATCATTT TGATGAATAA GATCTTTGCT 420 TATCCCATAA TAAAAAGTAT AATTTCACAA TTTGGAAATC AGGCGTTCAA TCAAAATAAT 66161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCCATAA TAAAAAGTAT AATTTCACAA TTTGGAAATC AGGCGTTCAA TCAAAATAAT 480 ACACCTTGTA GATGTTAATG TGAACTTGTG CTGGAGTTTA GCTTTTTATG GTGCAGTTAC 66221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCTTGTA GATGTTAATG TGAACTTGTG CTGGAGTTTA GCTTTTTATG GTGCAGTTAC 540 TCTATCTTTG CTATAGCCTG GTTGTCATAA AGTTGTGGTG CATACAAAAG TTTGGATAGT 66281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATCTTTG CTATAGCCTG GTTGTCATAA AGTTGTGGTG CATACAAAAG TTTGGATAGT 600 TTCCAAAGAT GTGAAGATGA TTAACTATTT TATCACTTTG TAGGAGTGGA AAAGGGCTCG 66341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAAGAT GTGAAGATGA TTAACTATTT TATCACTTTG TAGGAGTGGA AAAGGGCTCG 660 AAGGACCCAC AGAGGGAGAA AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAA-TTGC 66400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AAGGACCCAC AGAGGGAGAA AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTTGC 720 TCAAGAGAAG TTGCC-GGAT CTTAATTGTT CTACTATTGA ATCTGCAA 66447 || ||| ||| ||||| |||| |||||||||| |||||||||| |||||||| TC-AGAAAAG TTGCCNGGAT CTTAATTGTT CTACTATTGA ATCTGCAA 767 hqPGS_C08HBa0064M21.1+_SGN-E317365+ (65682 66447) ******************************************************************************** EST sequence 11 +strand 340 n (File: SGN-E371534+) 1 TGTTTTGCTG CTCAAGGCTG CAGGAGTGGA AAAGGGCTCG AAGGACCCAC AGAGGGAGAA 61 AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTGCT CAAGAGAAGT TGCCGGATCT 121 TAATTGTTCT ACTATTGAAT CTGCAATGAG GATAATAGCT GGCACTGCAG CAAATATGGG 181 AATTGACATT GACCCTCCGA TTCTTGAACC TAAAAAGAAA GAACTTGTGT ACTAGTTATG 241 CCTTTTCTAT TCCCATGTAA TGTATCCAAG TATTAGAAGC AAAAAAGAAT TGGAAGAGAA 301 GTAGATTGAC TTGAGATAAC CTTTTAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 65513 to 67377): Exon 1 66325 66630 ( 306 n); cDNA 24 329 ( 306 n); score: 0.990 Intron 1 66631 66720 ( 90 n); Pd: 0.070 (s: 0.94), Pa: 0.852 (s: 0) Exon 2 66721 66730 ( 10 n); cDNA 330 339 ( 10 n); score: 0.400 MATCH C08HBa0064M21.1+ SGN-E371534+ 0.990 316 0.929 C PGS_C08HBa0064M21.1+_SGN-E371534+ (66325 66630,66721 66730) Alignment (genomic DNA sequence = upper lines): GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 66384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 83 AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 66444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 143 CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 66504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 203 TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 66564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 263 ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 66624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 323 TTATCCGTTT GTTTCAATTC TTTGGACTCT TCATTCTTTA ATTATGATGA ATACACCATT 66684 ||| TTAAAA.... .......... .......... .......... .......... .......... 329 CTCTAGTGCA AGATGCCAAT CCAACTTTTT GTCCAGGTGC CATAAA 66730 | ||| .......... .......... .......... ......AAAA AAAAAA 339 hqPGS_C08HBa0064M21.1+_SGN-E371534+ (66325 66630) ******************************************************************************** EST sequence 79 +strand 340 n (File: SGN-E282797+) 1 TGTTTTGCTG CTCAAGGCTG CAGGAGTGGA AAAGGGCTCG AAGGACCCAC AGAGGGAGAA 61 AGTGGGGAAA ATAACTATTG ATCAATTGAA GGTAATTGCT CAAGAGAAGT TGCCGGATCT 121 TAATTGTTCT ACTATTGAAT CTGCAATGAG GATAATAGCT GGCACTGCAG CAAATATGGG 181 AATTGACATT GACCCTCCGA TTCTTGAACC TAAAAAGAAA GAACTTGTGT ACTAGTTATG 241 CCTTTTCTAT TCCCATGTAA TGTATCCAAG TATTAGAAGC AAAAAAGAAT TGGAAGAGAA 301 GTAGATTGAC TTGAGATAAC CTTTTAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 65513 to 67377): Exon 1 66325 66630 ( 306 n); cDNA 24 329 ( 306 n); score: 0.990 Intron 1 66631 66720 ( 90 n); Pd: 0.070 (s: 0.94), Pa: 0.852 (s: 0) Exon 2 66721 66730 ( 10 n); cDNA 330 339 ( 10 n); score: 0.400 MATCH C08HBa0064M21.1+ SGN-E282797+ 0.990 316 0.929 C PGS_C08HBa0064M21.1+_SGN-E282797+ (66325 66630,66721 66730) Alignment (genomic DNA sequence = upper lines): GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 66384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 83 AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 66444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 143 CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 66504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 203 TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 66564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 263 ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 66624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 323 TTATCCGTTT GTTTCAATTC TTTGGACTCT TCATTCTTTA ATTATGATGA ATACACCATT 66684 ||| TTAAAA.... .......... .......... .......... .......... .......... 329 CTCTAGTGCA AGATGCCAAT CCAACTTTTT GTCCAGGTGC CATAAA 66730 | ||| .......... .......... .......... ......AAAA AAAAAA 339 hqPGS_C08HBa0064M21.1+_SGN-E282797+ (66325 66630) ******************************************************************************** EST sequence 84 -strand 340 n (File: SGN-E371533-) 1 CTGTTTTGCT GCTCAAGGCT GCAGGAGTGG AAAAGGGCTC GAAGGACCCA CAGAGGGAGA 61 AAGTGGGGAA AATAACTATT GATCAATTGA AGGTAATTGC TCAAGAGAAG TTGCCGGATC 121 TTAATTGTTC TACTATTGAA TCTGCAATGA GGATAATAGC TGGCACTGCA GCAAATATGG 181 GAATTGACAT TGACCCTCCG ATTCTTGAAC CTAAAAAGAA AGAACTTGTG TACTAGTTAT 241 GCCTTTTCTA TTCCCATGTA ATGTATCCAA GTATTAGAAG CAAAAAAGAA TTGGAAGAGA 301 AGTAGATTGA CTTGAGATAA CCTTTTAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 65493 to 67357): Exon 1 66325 66630 ( 306 n); cDNA 25 330 ( 306 n); score: 0.990 Intron 1 66631 66720 ( 90 n); Pd: 0.070 (s: 0.94), Pa: 0.852 (s: 0) Exon 2 66721 66730 ( 10 n); cDNA 331 340 ( 10 n); score: 0.400 MATCH C08HBa0064M21.1+ SGN-E371533- 0.990 316 0.929 C PGS_C08HBa0064M21.1+_SGN-E371533- (66325 66630,66721 66730) Alignment (genomic DNA sequence = upper lines): GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 66384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGAAAA GGGCTCGAAG GACCCACAGA GGGAGAAAGT GGGGAAAATA ACTATTGATC 84 AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 66444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGAAGGT AATTGCTCAA GAGAAGTTGC CGGATCTTAA TTGTTCTACT ATTGAATCTG 144 CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 66504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGAGGAT AATAGCTGGC ACTGCAGCAA ATATGGGAAT TGACATTGAC CCTCCGATTC 204 TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 66564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACCTAA AAAGAAAGAA CTTGTGTACT AGTTATGCCT TTTCTATTCC CATGTAATGT 264 ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 66624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAAGTAT TAGAAGCAAA AAAGAATTGG AAGAGAAGTA GATTGACTTG AGATAACCTT 324 TTATCCGTTT GTTTCAATTC TTTGGACTCT TCATTCTTTA ATTATGATGA ATACACCATT 66684 ||| TTAAAA.... .......... .......... .......... .......... .......... 330 CTCTAGTGCA AGATGCCAAT CCAACTTTTT GTCCAGGTGC CATAAA 66730 | ||| .......... .......... .......... ......AAAA AAAAAA 340 hqPGS_C08HBa0064M21.1+_SGN-E371533- (66325 66630) ******************************************************************************** EST sequence 29 +strand 374 n (File: SGN-E277590+) 1 TAATAAGTAA AGATAAGGAA GGAGAGCCAC CCACACCATT TTATTTATAG AAAATATTGT 61 AAAGCTCCAT TGCTGGCAGT AGCAGTGAAA TGAGAGCAAT TGAAATATAC TGGTATGGGG 121 GCTTAGCCGC TTCCACTCTA TCACAATCAT CATTGTCGTG TATTTCCAAG GTTCATCAGA 181 GATGCCTGCG AACAAAAATC AAAGCAGTTG CAAGTAGTCA TGAGAAGGAA GAGGCTTGTG 241 TGAAGTTTGC CTTTGTCAGC TCAGTACTCC TACCAGATGG GACACCAGAT GTGCAGCTAA 301 GGAAAGCATG TGGCGGCCAA AAACTTAGGG ACATAATGCT CGATGCTAAT GTCGAGTTGT 361 ATGGACCTTA TGCA Predicted gene structure (within gDNA segment 66433 to 68114): Exon 1 67033 67292 ( 260 n); cDNA 1 260 ( 260 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 67373 67483 ( 111 n); cDNA 261 371 ( 111 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E277590+ 1.000 371 0.992 C PGS_C08HBa0064M21.1+_SGN-E277590+ (67033 67292,67373 67483) Alignment (genomic DNA sequence = upper lines): TAATAAGTAA AGATAAGGAA GGAGAGCCAC CCACACCATT TTATTTATAG AAAATATTGT 67092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGTAA AGATAAGGAA GGAGAGCCAC CCACACCATT TTATTTATAG AAAATATTGT 60 AAAGCTCCAT TGCTGGCAGT AGCAGTGAAA TGAGAGCAAT TGAAATATAC TGGTATGGGG 67152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTCCAT TGCTGGCAGT AGCAGTGAAA TGAGAGCAAT TGAAATATAC TGGTATGGGG 120 GCTTAGCCGC TTCCACTCTA TCACAATCAT CATTGTCGTG TATTTCCAAG GTTCATCAGA 67212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTAGCCGC TTCCACTCTA TCACAATCAT CATTGTCGTG TATTTCCAAG GTTCATCAGA 180 GATGCCTGCG AACAAAAATC AAAGCAGTTG CAAGTAGTCA TGAGAAGGAA GAGGCTTGTG 67272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCCTGCG AACAAAAATC AAAGCAGTTG CAAGTAGTCA TGAGAAGGAA GAGGCTTGTG 240 TGAAGTTTGC CTTTGTCAGC GTGAGTAGTC CAATTCGATC ATCATGAGTT AATTAGTAGT 67332 |||||||||| |||||||||| TGAAGTTTGC CTTTGTCAGC .......... .......... .......... .......... 260 CACATGATTA CCCATTAATA ACTGCTCGTA ATTCGTTCAG TCAGTACTCC TACCAGATGG 67392 |||||||||| |||||||||| .......... .......... .......... .......... TCAGTACTCC TACCAGATGG 280 GACACCAGAT GTGCAGCTAA GGAAAGCATG TGGCGGCCAA AAACTTAGGG ACATAATGCT 67452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACCAGAT GTGCAGCTAA GGAAAGCATG TGGCGGCCAA AAACTTAGGG ACATAATGCT 340 CGATGCTAAT GTCGAGTTGT ATGGACCTTA T 67483 |||||||||| |||||||||| |||||||||| | CGATGCTAAT GTCGAGTTGT ATGGACCTTA T 371 hqPGS_C08HBa0064M21.1+_SGN-E277590+ (67033 67292,67373 67483) ******************************************************************************** EST sequence 17 +strand 620 n (File: SGN-E295324+) 1 TGAAATGAGA GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA 61 ATCATCATTG TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC 121 AGTTGCAAGT AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGCTCAGT 181 ACTCCTACCA GATGGGACAC CAGATGTGCA GCTAAGGAAA GCATGTGGCG GCCAAAAACT 241 TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTATGCAA GACCTTTGCT 301 CAATTGTGGG GGAGGAGGAA CTTGTGCTAC ATGTTTGGTT GAGGTTGTTG AAGGAAAGGA 361 GCTACTCAAC CCTCGCACAG ACAAGGAGAA TGAAAATTTA AAACGGCATC CAAATAATTG 421 GAGGCTTGCT TGTCAGGCAA TAGTTGGTAA ACCTGATTCT AGAGGCATGA TGACCATTCA 481 GCAACTTCCG GAATGGAAAG CACACGAGTG GAATTATAGA GGATTACCGC CTAATGAAGA 541 GGAAGAAGAA GAAGCAGCAT CAATTTCTTC ATCTTCAGCC TGAGTTTTTA TCTTTACACA 601 ACAGCTTGAT CAATTATGTA Predicted gene structure (within gDNA segment 66518 to 68719): Exon 1 67118 67292 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 67373 67483 ( 111 n); cDNA 176 286 ( 111 n); score: 1.000 Intron 2 67484 67559 ( 76 n); Pd: 0.879 (s: 1.00), Pa: 0.732 (s: 1.00) Exon 3 67560 67616 ( 57 n); cDNA 287 343 ( 57 n); score: 1.000 Intron 3 67617 67685 ( 69 n); Pd: 0.913 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 67686 67748 ( 63 n); cDNA 344 406 ( 63 n); score: 1.000 Intron 4 67749 67825 ( 77 n); Pd: 0.986 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 5 67826 67888 ( 63 n); cDNA 407 469 ( 63 n); score: 1.000 Intron 5 67889 67958 ( 70 n); Pd: 0.978 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 6 67959 68109 ( 151 n); cDNA 470 620 ( 151 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E295324+ 1.000 620 1.000 C PGS_C08HBa0064M21.1+_SGN-E295324+ (67118 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68109) Alignment (genomic DNA sequence = upper lines): TGAAATGAGA GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA 67177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATGAGA GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA 60 ATCATCATTG TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC 67237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCATTG TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC 120 AGTTGCAAGT AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGCGTGAG 67297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGTTGCAAGT AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGC..... 175 TAGTCCAATT CGATCATCAT GAGTTAATTA GTAGTCACAT GATTACCCAT TAATAACTGC 67357 .......... .......... .......... .......... .......... .......... 175 TCGTAATTCG TTCAGTCAGT ACTCCTACCA GATGGGACAC CAGATGTGCA GCTAAGGAAA 67417 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TCAGT ACTCCTACCA GATGGGACAC CAGATGTGCA GCTAAGGAAA 220 GCATGTGGCG GCCAAAAACT TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA 67477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTGGCG GCCAAAAACT TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA 280 CCTTATGTAT GTACTACTAC TACTATATAT ATAATTCTTA TCATCCAGTC CAGCTACTTA 67537 |||||| CCTTAT.... .......... .......... .......... .......... .......... 286 TGTAAAATTA TTAATCTCCT AGGCAAGACC TTTGCTCAAT TGTGGGGGAG GAGGAACTTG 67597 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GCAAGACC TTTGCTCAAT TGTGGGGGAG GAGGAACTTG 324 TGCTACATGT TTGGTTGAGG TGAGTGTGAA CATTTGGTTT TGCTGCTCTA AATTAAACAT 67657 |||||||||| ||||||||| TGCTACATGT TTGGTTGAG. .......... .......... .......... .......... 343 ATCTCACACC GACAGACATC AATTATAGGT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG 67717 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG 375 CACAGACAAG GAGAATGAAA ATTTAAAACG GGTATACATA TATATATATA TACGAGCAAG 67777 |||||||||| |||||||||| |||||||||| | CACAGACAAG GAGAATGAAA ATTTAAAACG G......... .......... .......... 406 TGATGAATGT AGTACTGTTG TTAATTAATT TGTATATATA ATTTTCAGCA TCCAAATAAT 67837 || |||||||||| .......... .......... .......... .......... ........CA TCCAAATAAT 418 TGGAGGCTTG CTTGTCAGGC AATAGTTGGT AAACCTGATT CTAGAGGCAT GGTACGTATG 67897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGGAGGCTTG CTTGTCAGGC AATAGTTGGT AAACCTGATT CTAGAGGCAT G......... 469 GATCGAACGT CTTAATTAAT TTCCAACTGT TAGTCTATTG ACCAGTAATC AATTTGTACA 67957 .......... .......... .......... .......... .......... .......... 469 GATGACCATT CAGCAACTTC CGGAATGGAA AGCACACGAG TGGAATTATA GAGGATTACC 68017 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ATGACCATT CAGCAACTTC CGGAATGGAA AGCACACGAG TGGAATTATA GAGGATTACC 528 GCCTAATGAA GAGGAAGAAG AAGAAGCAGC ATCAATTTCT TCATCTTCAG CCTGAGTTTT 68077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTAATGAA GAGGAAGAAG AAGAAGCAGC ATCAATTTCT TCATCTTCAG CCTGAGTTTT 588 TATCTTTACA CAACAGCTTG ATCAATTATG TA 68109 |||||||||| |||||||||| |||||||||| || TATCTTTACA CAACAGCTTG ATCAATTATG TA 620 hqPGS_C08HBa0064M21.1+_SGN-E295324+ (67118 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68109) ******************************************************************************** EST sequence 63 +strand 734 n (File: SGN-E343278+) 1 ATGAGAGCAA TTGAAATATA CTGGTATGGG GGCTTAGCCG CTTCCACTCT ATCACAATCA 61 TCATTGTCGT GTATTTCCAA GGTTCATCAG AGATGCCTGC GAACAAAAAT CAAAGCAGTT 121 GCAAGTAGTC ATGAGAAGGA AGAGGCTTGT GTGAAGTTTG CCTTTGTCAG CTCAGTACTC 181 CTACCAGATG GGACACCAGA TGTGCAGCTA AGGAAAGCAT GTGGCGGCCA AAAACTTAGG 241 GACATAATGC TCGATGCTAA TGTCGAGTTG TATGGACCTT ATGCAAGACC TTTGCTCAAT 301 TGTGGGGGAG GAGGAACTTG TGCTACATGT TTGGTTGAGG TTGTTGAAGG AAAGGAGCTA 361 CTCAACCCTC GCACAGACAA GGAGAATGAA AATTTAAAAC GGCATCCAAA TAATTGGAGG 421 CTTGCTTGTC AGGCAATAGT TGGTAAACCT GATTCTAGAG GCATGATGAC CATTCAGCAA 481 CTTCCGGAAT GGAAAGCACA CGAGTGGAAT TATAGAGGAT TACCGCCTAA TGAAGAGGAA 541 GAAGAAGAAG CAGCATCAAT TTCTTCATCT TCAGCCTGAG TTTTTATCTT TACACAACAG 601 CTTGATCAAT TATGTATGTC ATGTCACAAT AACCAGCTCT TCTCTTTTTG AGTCCAATTA 661 TATATGAGCT TCATAAATTT CTAAAAGTAA AAGAAAATAC TTGGAATGGG AACCCATAAT 721 GATTAGTATG TCAT Predicted gene structure (within gDNA segment 66522 to 69026): Exon 1 67122 67292 ( 171 n); cDNA 1 171 ( 171 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 67373 67483 ( 111 n); cDNA 172 282 ( 111 n); score: 1.000 Intron 2 67484 67559 ( 76 n); Pd: 0.879 (s: 1.00), Pa: 0.732 (s: 1.00) Exon 3 67560 67616 ( 57 n); cDNA 283 339 ( 57 n); score: 1.000 Intron 3 67617 67685 ( 69 n); Pd: 0.913 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 67686 67748 ( 63 n); cDNA 340 402 ( 63 n); score: 1.000 Intron 4 67749 67825 ( 77 n); Pd: 0.986 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 5 67826 67888 ( 63 n); cDNA 403 465 ( 63 n); score: 1.000 Intron 5 67889 67958 ( 70 n); Pd: 0.978 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 6 67959 68227 ( 269 n); cDNA 466 734 ( 269 n); score: 0.981 MATCH C08HBa0064M21.1+ SGN-E343278+ 0.993 734 1.000 C PGS_C08HBa0064M21.1+_SGN-E343278+ (67122 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68227) Alignment (genomic DNA sequence = upper lines): ATGAGAGCAA TTGAAATATA CTGGTATGGG GGCTTAGCCG CTTCCACTCT ATCACAATCA 67181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGAGCAA TTGAAATATA CTGGTATGGG GGCTTAGCCG CTTCCACTCT ATCACAATCA 60 TCATTGTCGT GTATTTCCAA GGTTCATCAG AGATGCCTGC GAACAAAAAT CAAAGCAGTT 67241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTGTCGT GTATTTCCAA GGTTCATCAG AGATGCCTGC GAACAAAAAT CAAAGCAGTT 120 GCAAGTAGTC ATGAGAAGGA AGAGGCTTGT GTGAAGTTTG CCTTTGTCAG CGTGAGTAGT 67301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GCAAGTAGTC ATGAGAAGGA AGAGGCTTGT GTGAAGTTTG CCTTTGTCAG C......... 171 CCAATTCGAT CATCATGAGT TAATTAGTAG TCACATGATT ACCCATTAAT AACTGCTCGT 67361 .......... .......... .......... .......... .......... .......... 171 AATTCGTTCA GTCAGTACTC CTACCAGATG GGACACCAGA TGTGCAGCTA AGGAAAGCAT 67421 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TCAGTACTC CTACCAGATG GGACACCAGA TGTGCAGCTA AGGAAAGCAT 220 GTGGCGGCCA AAAACTTAGG GACATAATGC TCGATGCTAA TGTCGAGTTG TATGGACCTT 67481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCGGCCA AAAACTTAGG GACATAATGC TCGATGCTAA TGTCGAGTTG TATGGACCTT 280 ATGTATGTAC TACTACTACT ATATATATAA TTCTTATCAT CCAGTCCAGC TACTTATGTA 67541 || AT........ .......... .......... .......... .......... .......... 282 AAATTATTAA TCTCCTAGGC AAGACCTTTG CTCAATTGTG GGGGAGGAGG AACTTGTGCT 67601 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GC AAGACCTTTG CTCAATTGTG GGGGAGGAGG AACTTGTGCT 324 ACATGTTTGG TTGAGGTGAG TGTGAACATT TGGTTTTGCT GCTCTAAATT AAACATATCT 67661 |||||||||| ||||| ACATGTTTGG TTGAG..... .......... .......... .......... .......... 339 CACACCGACA GACATCAATT ATAGGTTGTT GAAGGAAAGG AGCTACTCAA CCCTCGCACA 67721 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGTT GAAGGAAAGG AGCTACTCAA CCCTCGCACA 375 GACAAGGAGA ATGAAAATTT AAAACGGGTA TACATATATA TATATATACG AGCAAGTGAT 67781 |||||||||| |||||||||| ||||||| GACAAGGAGA ATGAAAATTT AAAACGG... .......... .......... .......... 402 GAATGTAGTA CTGTTGTTAA TTAATTTGTA TATATAATTT TCAGCATCCA AATAATTGGA 67841 |||||| |||||||||| .......... .......... .......... .......... ....CATCCA AATAATTGGA 418 GGCTTGCTTG TCAGGCAATA GTTGGTAAAC CTGATTCTAG AGGCATGGTA CGTATGGATC 67901 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGCTTGCTTG TCAGGCAATA GTTGGTAAAC CTGATTCTAG AGGCATG... .......... 465 GAACGTCTTA ATTAATTTCC AACTGTTAGT CTATTGACCA GTAATCAATT TGTACAGATG 67961 ||| .......... .......... .......... .......... .......... .......ATG 468 ACCATTCAGC AACTTCCGGA ATGGAAAGCA CACGAGTGGA ATTATAGAGG ATTACCGCCT 68021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCATTCAGC AACTTCCGGA ATGGAAAGCA CACGAGTGGA ATTATAGAGG ATTACCGCCT 528 AATGAAGAGG AAGAAGAAGA AGCAGCATCA ATTTCTTCAT CTTCAGCCTG AGTTTTTATC 68081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAAGAGG AAGAAGAAGA AGCAGCATCA ATTTCTTCAT CTTCAGCCTG AGTTTTTATC 588 TTTACACAAC AGCTTGATCA ATTATGTATG TCATGTCACA ATAACCAGCT CTTCTCTTTT 68141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACACAAC AGCTTGATCA ATTATGTATG TCATGTCACA ATAACCAGCT CTTCTCTTTT 648 TGAGTCCAAT TATATATGAG CTTCATAAAT TTCTAAAAGT AAAAGAAAAT ACTTGGAATG 68201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTCCAAT TATATATGAG CTTCATAAAT TTCTAAAAGT AAAAGAAAAT ACTTGGAATG 708 GGAACAATAA TTGATTAGTA TGTCAT 68227 ||||| | ||||||||| |||||| GGAACCCATA ATGATTAGTA TGTCAT 734 hqPGS_C08HBa0064M21.1+_SGN-E343278+ (67122 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68227) ******************************************************************************** EST sequence 2 +strand 441 n (File: SGN-E324857+) 1 GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA ATCATCATTG 61 TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC AGTTGCAAGT 121 AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGCTCAGT ACTCCTACCA 181 GATGGGACAC CAGATGTGCA GCTAAGGAAA GCATGTGGCG GCCAAAAACT TAGGGACATA 241 ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTATGCAA GACCTTTGCT CAATTGTGGG 301 GGAGGAGGAA CTTGTGCTAC ATGTTTGGTT GAGGTTGTTG AAGGAAAGGA GCTACTCAAC 361 CCTCGCACAG ACAAGGAGAA TGAAAATTTA AAACGGGTAT ACATATATAT ATATATACGA 421 GCAAGTGATG AATGTAGTAC T Predicted gene structure (within gDNA segment 66528 to 68403): Exon 1 67128 67292 ( 165 n); cDNA 1 165 ( 165 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 67373 67483 ( 111 n); cDNA 166 276 ( 111 n); score: 1.000 Intron 2 67484 67559 ( 76 n); Pd: 0.879 (s: 1.00), Pa: 0.732 (s: 1.00) Exon 3 67560 67616 ( 57 n); cDNA 277 333 ( 57 n); score: 1.000 Intron 3 67617 67685 ( 69 n); Pd: 0.913 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 67686 67793 ( 108 n); cDNA 334 441 ( 108 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E324857+ 1.000 441 1.000 C PGS_C08HBa0064M21.1+_SGN-E324857+ (67128 67292,67373 67483,67560 67616,67686 67793) Alignment (genomic DNA sequence = upper lines): GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA ATCATCATTG 67187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATTGAAA TATACTGGTA TGGGGGCTTA GCCGCTTCCA CTCTATCACA ATCATCATTG 60 TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC AGTTGCAAGT 67247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGTATTT CCAAGGTTCA TCAGAGATGC CTGCGAACAA AAATCAAAGC AGTTGCAAGT 120 AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGCGTGAG TAGTCCAATT 67307 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGTCATGAGA AGGAAGAGGC TTGTGTGAAG TTTGCCTTTG TCAGC..... .......... 165 CGATCATCAT GAGTTAATTA GTAGTCACAT GATTACCCAT TAATAACTGC TCGTAATTCG 67367 .......... .......... .......... .......... .......... .......... 165 TTCAGTCAGT ACTCCTACCA GATGGGACAC CAGATGTGCA GCTAAGGAAA GCATGTGGCG 67427 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TCAGT ACTCCTACCA GATGGGACAC CAGATGTGCA GCTAAGGAAA GCATGTGGCG 220 GCCAAAAACT TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTATGTAT 67487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCCAAAAACT TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTAT.... 276 GTACTACTAC TACTATATAT ATAATTCTTA TCATCCAGTC CAGCTACTTA TGTAAAATTA 67547 .......... .......... .......... .......... .......... .......... 276 TTAATCTCCT AGGCAAGACC TTTGCTCAAT TGTGGGGGAG GAGGAACTTG TGCTACATGT 67607 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GCAAGACC TTTGCTCAAT TGTGGGGGAG GAGGAACTTG TGCTACATGT 324 TTGGTTGAGG TGAGTGTGAA CATTTGGTTT TGCTGCTCTA AATTAAACAT ATCTCACACC 67667 ||||||||| TTGGTTGAG. .......... .......... .......... .......... .......... 333 GACAGACATC AATTATAGGT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG CACAGACAAG 67727 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG CACAGACAAG 375 GAGAATGAAA ATTTAAAACG GGTATACATA TATATATATA TACGAGCAAG TGATGAATGT 67787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATGAAA ATTTAAAACG GGTATACATA TATATATATA TACGAGCAAG TGATGAATGT 435 AGTACT 67793 |||||| AGTACT 441 hqPGS_C08HBa0064M21.1+_SGN-E324857+ (67128 67292,67373 67483,67560 67616,67686 67793) ******************************************************************************** EST sequence 134 -strand 473 n (File: SGN-E279434-) 1 TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTATGCAA GACCTTTGCT 61 CAATTGTGGG GCAGAAGGAA CTTGTGCTAC ATGTTTGGTT CAGGTTGTTG AAGGAAAGGA 121 GCTACTCAAC CCTCGCACAG ACAAGGAGAA TGAAAATTTA AAACGGCATC CAAATAATTG 181 GAGGCTTGCT TGTCAGGCAA TAGTTGGTAA ACCTGATTCT AGAGGCATGA TGACCATTCA 241 GCAACTTCCG CAATGGAAAG CACACGAGTG GAATTATAGA GGATTCCCGC CTAATGAAGA 301 GGAAGAAGAA GAAGCAGCAT CAATTTCTTC ATCTTCAGCC TGAGTTTTTA TCTTTACACA 361 ACAGCTTGAT CAATTATGTA TGTCATGTCA CAATAACCAG CTCTTCTCTT TTTGAGTCCG 421 ATTATATATG AGCTTCATAA ATTTCTAAAA GTAGAACAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 66828 to 68982): Exon 1 67438 67483 ( 46 n); cDNA 1 46 ( 46 n); score: 1.000 Intron 1 67484 67559 ( 76 n); Pd: 0.879 (s: 1.00), Pa: 0.732 (s: 0.96) Exon 2 67560 67616 ( 57 n); cDNA 47 103 ( 57 n); score: 0.947 Intron 2 67617 67685 ( 69 n); Pd: 0.913 (s: 0.94), Pa: 0.989 (s: 1.00) Exon 3 67686 67748 ( 63 n); cDNA 104 166 ( 63 n); score: 1.000 Intron 3 67749 67825 ( 77 n); Pd: 0.986 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 67826 67888 ( 63 n); cDNA 167 229 ( 63 n); score: 1.000 Intron 4 67889 67958 ( 70 n); Pd: 0.978 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 5 67959 68199 ( 241 n); cDNA 230 470 ( 241 n); score: 0.954 MATCH C08HBa0064M21.1+ SGN-E279434- 0.967 470 0.994 C PGS_C08HBa0064M21.1+_SGN-E279434- (67438 67483,67560 67616,67686 67748,67826 67888,67959 68199) Alignment (genomic DNA sequence = upper lines): TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTATGTAT GTACTACTAC 67497 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAGGGACATA ATGCTCGATG CTAATGTCGA GTTGTATGGA CCTTAT.... .......... 46 TACTATATAT ATAATTCTTA TCATCCAGTC CAGCTACTTA TGTAAAATTA TTAATCTCCT 67557 .......... .......... .......... .......... .......... .......... 46 AGGCAAGACC TTTGCTCAAT TGTGGGGGAG GAGGAACTTG TGCTACATGT TTGGTTGAGG 67617 |||||||| |||||||||| ||||||| || ||||||||| |||||||||| |||||| || ..GCAAGACC TTTGCTCAAT TGTGGGGCAG AAGGAACTTG TGCTACATGT TTGGTTCAG. 103 TGAGTGTGAA CATTTGGTTT TGCTGCTCTA AATTAAACAT ATCTCACACC GACAGACATC 67677 .......... .......... .......... .......... .......... .......... 103 AATTATAGGT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG CACAGACAAG GAGAATGAAA 67737 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TGTTGAAGGA AAGGAGCTAC TCAACCCTCG CACAGACAAG GAGAATGAAA 155 ATTTAAAACG GGTATACATA TATATATATA TACGAGCAAG TGATGAATGT AGTACTGTTG 67797 |||||||||| | ATTTAAAACG G......... .......... .......... .......... .......... 166 TTAATTAATT TGTATATATA ATTTTCAGCA TCCAAATAAT TGGAGGCTTG CTTGTCAGGC 67857 || |||||||||| |||||||||| |||||||||| .......... .......... ........CA TCCAAATAAT TGGAGGCTTG CTTGTCAGGC 198 AATAGTTGGT AAACCTGATT CTAGAGGCAT GGTACGTATG GATCGAACGT CTTAATTAAT 67917 |||||||||| |||||||||| |||||||||| | AATAGTTGGT AAACCTGATT CTAGAGGCAT G......... .......... .......... 229 TTCCAACTGT TAGTCTATTG ACCAGTAATC AATTTGTACA GATGACCATT CAGCAACTTC 67977 ||||||||| |||||||||| .......... .......... .......... .......... .ATGACCATT CAGCAACTTC 248 CGGAATGGAA AGCACACGAG TGGAATTATA GAGGATTACC GCCTAATGAA GAGGAAGAAG 68037 || ||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CGCAATGGAA AGCACACGAG TGGAATTATA GAGGATTCCC GCCTAATGAA GAGGAAGAAG 308 AAGAAGCAGC ATCAATTTCT TCATCTTCAG CCTGAGTTTT TATCTTTACA CAACAGCTTG 68097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGCAGC ATCAATTTCT TCATCTTCAG CCTGAGTTTT TATCTTTACA CAACAGCTTG 368 ATCAATTATG TATGTCATGT CACAATAACC AGCTCTTCTC TTTTTGAGTC CAATTATATA 68157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ATCAATTATG TATGTCATGT CACAATAACC AGCTCTTCTC TTTTTGAGTC CGATTATATA 428 TGAGCTTCAT AAATTTCTAA AAGTAAAAGA AAATACTTGG AA 68199 |||||||||| |||||||||| ||||| || | ||| | || TGAGCTTCAT AAATTTCTAA AAGTAGAACA AAAAAAAAAA AA 470 hqPGS_C08HBa0064M21.1+_SGN-E279434- (67438 67483,67560 67616,67686 67748,67826 67888,67959 68199) ******************************************************************************** EST sequence 136 -strand 374 n (File: SGN-E223595-) 1 AAGGAGAATG ATAATTTAAA ACGGCATCCA AATAATTGGA GGCTTGCTTG TCAGGCAATA 61 GTTGGTAAAC CTGATTCTAG AGGCATGATG ACCATTCAGC AACTTCCGGA ATGGAAAGCA 121 CACGAGTGGA ATTATAAAGG ATTGCCGCCT AATGAAGAGG AAGAAGAAGA AGCAGCATCA 181 ATTTCTTCAT CTTCAGCCTG AGTTTTTATC TTTACACAAC AGCTTGATCA ATTATGTATG 241 TCATGTCACA ATAACCAGCT CTTCTCTTTT TGAGTCCAAT TATATATGAG CTTCATAAAT 301 TTCTAAAAGT AAAAGAAAAT ACTTGGAATG GGAACAATAA TTGATTAGTA TGTCATCAAA 361 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 66985 to 68962): Exon 1 67725 67748 ( 24 n); cDNA 1 24 ( 24 n); score: 0.958 Intron 1 67749 67825 ( 77 n); Pd: 0.986 (s: 0), Pa: 0.983 (s: 1.00) Exon 2 67826 67888 ( 63 n); cDNA 25 87 ( 63 n); score: 1.000 Intron 2 67889 67958 ( 70 n); Pd: 0.978 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 3 67959 68236 ( 278 n); cDNA 88 365 ( 278 n); score: 0.989 MATCH C08HBa0064M21.1+ SGN-E223595- 0.991 365 0.976 C PGS_C08HBa0064M21.1+_SGN-E223595- (67725 67748,67826 67888,67959 68236) Alignment (genomic DNA sequence = upper lines): AAGGAGAATG AAAATTTAAA ACGGGTATAC ATATATATAT ATATACGAGC AAGTGATGAA 67784 |||||||||| | |||||||| |||| AAGGAGAATG ATAATTTAAA ACGG...... .......... .......... .......... 24 TGTAGTACTG TTGTTAATTA ATTTGTATAT ATAATTTTCA GCATCCAAAT AATTGGAGGC 67844 ||||||||| |||||||||| .......... .......... .......... .......... .CATCCAAAT AATTGGAGGC 43 TTGCTTGTCA GGCAATAGTT GGTAAACCTG ATTCTAGAGG CATGGTACGT ATGGATCGAA 67904 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTGCTTGTCA GGCAATAGTT GGTAAACCTG ATTCTAGAGG CATG...... .......... 87 CGTCTTAATT AATTTCCAAC TGTTAGTCTA TTGACCAGTA ATCAATTTGT ACAGATGACC 67964 |||||| .......... .......... .......... .......... .......... ....ATGACC 93 ATTCAGCAAC TTCCGGAATG GAAAGCACAC GAGTGGAATT ATAGAGGATT ACCGCCTAAT 68024 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| ATTCAGCAAC TTCCGGAATG GAAAGCACAC GAGTGGAATT ATAAAGGATT GCCGCCTAAT 153 GAAGAGGAAG AAGAAGAAGC AGCATCAATT TCTTCATCTT CAGCCTGAGT TTTTATCTTT 68084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGGAAG AAGAAGAAGC AGCATCAATT TCTTCATCTT CAGCCTGAGT TTTTATCTTT 213 ACACAACAGC TTGATCAATT ATGTATGTCA TGTCACAATA ACCAGCTCTT CTCTTTTTGA 68144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAACAGC TTGATCAATT ATGTATGTCA TGTCACAATA ACCAGCTCTT CTCTTTTTGA 273 GTCCAATTAT ATATGAGCTT CATAAATTTC TAAAAGTAAA AGAAAATACT TGGAATGGGA 68204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAATTAT ATATGAGCTT CATAAATTTC TAAAAGTAAA AGAAAATACT TGGAATGGGA 333 ACAATAATTG ATTAGTATGT CATCAAAAGA AA 68236 |||||||||| |||||||||| |||||||| | || ACAATAATTG ATTAGTATGT CATCAAAAAA AA 365 hqPGS_C08HBa0064M21.1+_SGN-E223595- (67725 67748,67826 67888,67959 68236) ******************************************************************************** EST sequence 135 -strand 370 n (File: SGN-E223214-) 1 AGAATGAAAA TTTAAAACGG CATCCAAATA ATTGGAGGCT TGCTTGTCAG GCAATAGTTG 61 GTAAACCTGA TTCTAGAGGC ATGATGACCA TTCAGCAACT TCCGGAATGG AAAGCACACG 121 AGTGGAATTA TAGAGGATTA CCGCCTAATG AAGAGGAAGA AGAAGAAGCA GCATCAATTT 181 CTTCATCTTC AGCCTGAGTT TTTATCTTTA CACAACAGCT TGATCAATTA TGTATGTCAT 241 GTCACAATAA CCAGCTCTTC TCTTTTTGAG TCCAATTATA TATGAGCTTC ATAAATTTCT 301 AAAAGTAAAA GAAAATACTT GGAATGGGAA CAATAATTGA TTAGTATGTC CTCAAAAAAA 361 AAAAAAAAAA Predicted gene structure (within gDNA segment 67025 to 69025): Exon 1 67729 67748 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 67749 67825 ( 77 n); Pd: 0.986 (s: 0), Pa: 0.983 (s: 1.00) Exon 2 67826 67888 ( 63 n); cDNA 21 83 ( 63 n); score: 1.000 Intron 2 67889 67958 ( 70 n); Pd: 0.978 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 67959 68236 ( 278 n); cDNA 84 361 ( 278 n); score: 0.993 MATCH C08HBa0064M21.1+ SGN-E223214- 0.994 361 0.976 C PGS_C08HBa0064M21.1+_SGN-E223214- (67729 67748,67826 67888,67959 68236) Alignment (genomic DNA sequence = upper lines): AGAATGAAAA TTTAAAACGG GTATACATAT ATATATATAT ACGAGCAAGT GATGAATGTA 67788 |||||||||| |||||||||| AGAATGAAAA TTTAAAACGG .......... .......... .......... .......... 20 GTACTGTTGT TAATTAATTT GTATATATAA TTTTCAGCAT CCAAATAATT GGAGGCTTGC 67848 ||| |||||||||| |||||||||| .......... .......... .......... .......CAT CCAAATAATT GGAGGCTTGC 43 TTGTCAGGCA ATAGTTGGTA AACCTGATTC TAGAGGCATG GTACGTATGG ATCGAACGTC 67908 |||||||||| |||||||||| |||||||||| |||||||||| TTGTCAGGCA ATAGTTGGTA AACCTGATTC TAGAGGCATG .......... .......... 83 TTAATTAATT TCCAACTGTT AGTCTATTGA CCAGTAATCA ATTTGTACAG ATGACCATTC 67968 |||||||||| .......... .......... .......... .......... .......... ATGACCATTC 93 AGCAACTTCC GGAATGGAAA GCACACGAGT GGAATTATAG AGGATTACCG CCTAATGAAG 68028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACTTCC GGAATGGAAA GCACACGAGT GGAATTATAG AGGATTACCG CCTAATGAAG 153 AGGAAGAAGA AGAAGCAGCA TCAATTTCTT CATCTTCAGC CTGAGTTTTT ATCTTTACAC 68088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGAAGA AGAAGCAGCA TCAATTTCTT CATCTTCAGC CTGAGTTTTT ATCTTTACAC 213 AACAGCTTGA TCAATTATGT ATGTCATGTC ACAATAACCA GCTCTTCTCT TTTTGAGTCC 68148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGCTTGA TCAATTATGT ATGTCATGTC ACAATAACCA GCTCTTCTCT TTTTGAGTCC 273 AATTATATAT GAGCTTCATA AATTTCTAAA AGTAAAAGAA AATACTTGGA ATGGGAACAA 68208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATATAT GAGCTTCATA AATTTCTAAA AGTAAAAGAA AATACTTGGA ATGGGAACAA 333 TAATTGATTA GTATGTCATC AAAAGAAA 68236 |||||||||| ||||||| || |||| ||| TAATTGATTA GTATGTCCTC AAAAAAAA 361 hqPGS_C08HBa0064M21.1+_SGN-E223214- (67729 67748,67826 67888,67959 68236) ******************************************************************************** EST sequence 69 +strand 654 n (File: SGN-E322639+) 1 TTCAATCCAA AGGTTTACCA GAAATTGTAA AGATGAGCAA CGAGGATGGC GGTGATGATC 61 TGTCTCCACA AAGACGTGCC CCTCGTTTGA ATGAGAGGAT CCTATCATCT ATATCCAGGA 121 GGTCTGTTGC TGCTCATCCT TGGCATGACC TTGAGATAGG ACCTGAAGCT CCAAGCGTTT 181 TCAATGTTGT CATTGAGATT TCAAAAGGAA GCAAAGTCAA ATGAGCTGGA CAAGAAAACC 241 GGTCTTATTA AGGTTGATCG CATCCTATAT TCTTCAGTGG TTTACCCTCA GAACTATGGT 301 TTCATTCCCC GAACACTCTG TGAAGATAAT GACCCAATGG ATGTATTAGT CCTCATGCAG 361 GAACCTGTCC TTCCAGGTTG TTTCCTTCGA GCTAGGGCGA TAGGCCTGAT GCCTATGATT 421 GATCAGGGAG AGAAAGATGA CAAGATCATA GCAGTGTGTG CTGACGATCC AGAATATCGC 481 CACTACACTG ATATAAAACA GCTCCCCCCA CACCGCCTTG CTGAAATTCG CCGCTTTTTT 541 GAAGACTACA AGAAGAATGA ANACAAAGAC GTTGCTGTTG ACGATTTCCT GCCTCCAAGT 601 ACTGCTGTCG ATGCCATTCA GTACTCCATG GATCTGTATG CTGAATACAT ATTA Predicted gene structure (within gDNA segment 65433 to 72204): Exon 1 68954 69016 ( 63 n); cDNA 1 66 ( 66 n); score: 0.437 Intron 1 69017 69160 ( 144 n); Pd: 0.900 (s: 0.44), Pa: 0.000 (s: 0.82) Exon 2 69161 69253 ( 93 n); cDNA 67 159 ( 93 n); score: 0.828 Intron 2 69254 69339 ( 86 n); Pd: 1.000 (s: 0.78), Pa: 0.963 (s: 0) Exon 3 69340 69368 ( 29 n); cDNA 160 188 ( 29 n); score: 0.931 Intron 3 69369 69448 ( 80 n); Pd: 0.782 (s: 0), Pa: 0.993 (s: 0.86) Exon 4 69449 69514 ( 66 n); cDNA 189 252 ( 64 n); score: 0.864 Intron 4 69515 69600 ( 86 n); Pd: 1.000 (s: 0.86), Pa: 0.995 (s: 0.86) Exon 5 69601 69708 ( 108 n); cDNA 253 360 ( 108 n); score: 0.861 Intron 5 69709 69794 ( 86 n); Pd: 0.978 (s: 0.86), Pa: 0.601 (s: 0.84) Exon 6 69795 69860 ( 66 n); cDNA 361 426 ( 66 n); score: 0.879 Intron 6 69861 69926 ( 66 n); Pd: 0.980 (s: 0.90), Pa: 0.992 (s: 0.90) Exon 7 69927 70047 ( 121 n); cDNA 427 547 ( 121 n); score: 0.876 Intron 7 70048 70118 ( 71 n); Pd: 0.976 (s: 0.82), Pa: 0.997 (s: 0.80) Exon 8 70119 70200 ( 82 n); cDNA 548 629 ( 82 n); score: 0.793 Intron 8 70201 70279 ( 79 n); Pd: 0.903 (s: 0.80), Pa: 0.997 (s: 0) Exon 9 70280 70304 ( 25 n); cDNA 630 654 ( 25 n); score: 0.880 MATCH C08HBa0064M21.1+ SGN-E322639+ 0.807 653 0.998 C PGS_C08HBa0064M21.1+_SGN-E322639+ (68954 69016,69161 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70304) Alignment (genomic DNA sequence = upper lines): TTTAGTTTGT AGG-TTAGGT G-AATTAGAA AAATCAGGAA -AAGGAATCG GACAACAATA 69010 || | | ||| ||| | |||| || | || || || |||| | | || TTCAATCCAA AGGTTTACCA GAAATTGTAA AGATGAGCAA CGAGGATGGC GGTGATGATC 60 TTACTAGTTT CCTTGTCGCG TGGAAAGCTG TCTTGTTTCA CCTAATACCT AGGGCTCTGT 69070 | || TGTCTC.... .......... .......... .......... .......... .......... 66 GCTATTATTT ATATACACCC CACTCACCAT TTCTCCTCTA TTCATCTATA TATCTACAAG 69130 .......... .......... .......... .......... .......... .......... 66 TTGTCATTTT GCACGTAAAA ATGAGTGATG AACAAAGACA CGCCCCTCGT TTGAATGAGA 69190 |||||||| ||||||||| |||||||||| .......... .......... .......... CACAAAGACG TGCCCCTCGT TTGAATGAGA 96 GGATTCTCTC ATCATTGTCA AGGAGGTCTG TCGCCGCTCA CCCATGGCAC GATCTCGAGA 69250 |||| || || ||| | || |||||||||| | || ||||| || ||||| || || |||| GGATCCTATC ATCTATATCC AGGAGGTCTG TTGCTGCTCA TCCTTGGCAT GACCTTGAGA 156 TAGGTAGGTA GTTTAATTCT CTTTTTTCAT TCATAATACT ATCAATTATT AATGCTGCAT 69310 ||| TAG....... .......... .......... .......... .......... .......... 159 TCTCATCATT CCTAATTGTT GCTGTGTAGG ACCTGAAGCT CCAAATGTTT TCAATGTTGT 69370 | |||||||||| |||| |||| |||||||| .......... .......... .........G ACCTGAAGCT CCAAGCGTTT TCAATGTT.. 188 AAGTACAATT GTTTTACACT CCCCTGTGAT TGACATTGAT TATGATCCTA TCAGATTAAA 69430 .......... .......... .......... .......... .......... .......... 188 GTAGCATTAT CCTTACAGGT CATTGAGATA TCGAAAGGCA GTAAAGTCAA ATATGAGCTT 69490 || ||||||||| || ||||| | | |||||| | | ||||||| .......... ........GT CATTGAGATT TCAAAAGGAA GCAAAGTC-A A-ATGAGCTG 228 GACAAGAAAA CTGGTCTCAT TAAGGCATGA CCTCAACACT CCTAATTAAG CAATGTGAAT 69550 |||||||||| | ||||| || |||| GACAAGAAAA CCGGTCTTAT TAAG...... .......... .......... .......... 252 GAATCTCTTC TTGTGTACAT GTTGTGTCAA TCTCCAATAT CTATTTTCAG GTTGATCGCG 69610 ||||||||| .......... .......... .......... .......... .......... GTTGATCGCA 262 TCCTATACTC ATCAATGGTG TACCCCCAGA ACTATGGCTT CATTCCTCGG ACTTTATGTG 69670 ||||||| || ||| |||| ||||| |||| ||||||| || |||||| || || | |||| TCCTATATTC TTCAGTGGTT TACCCTCAGA ACTATGGTTT CATTCCCCGA ACACTCTGTG 322 AAGATAATGA CCCCATGGAT GTACTAGTGC TCATGCAGGT AACGGAATGC CCTATATCCT 69730 |||||||||| ||| |||||| ||| |||| | |||||||| AAGATAATGA CCCAATGGAT GTATTAGTCC TCATGCAG.. .......... .......... 360 ATACAATACA ATGAATAGCA TTTTCTCCGG TTCAATTGAA TTGAGAAAAT TGTTTCATCA 69790 .......... .......... .......... .......... .......... .......... 360 ACAGGAGCCT GTTCTCCCAG GCTGTTTCCT TCGAGCTAGG GCCATAGGTT TAATGCCTAT 69850 || ||| || || |||| | |||||||| |||||||||| || ||||| | |||||||| ....GAACCT GTCCTTCCAG GTTGTTTCCT TCGAGCTAGG GCGATAGGCC TGATGCCTAT 416 GATTGATCAG GTTAGGTTGA TTGCTGCCTG CAGGTTAAAC TTTATTTCCT ATCTGATAAA 69910 |||||||||| GATTGATCAG .......... .......... .......... .......... .......... 426 AGGATTTTTA ATCCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG CTGACGATCC 69970 || | |||| ||||| ||||| ||| ||||| |||| |||||||||| .......... ......GGAG AGAAAGATGA CAAGATCATA GCAGTGTGTG CTGACGATCC 470 AGAATATCGC CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG CAGAAATCCG 70030 |||||||||| |||||||||| |||| || || ||| | || ||||| || | | ||||| || AGAATATCGC CACTACACTG ATATAAAACA GCTCCCCCCA CACCGCCTTG CTGAAATTCG 530 CCGCTTTTTT GAAGACTGTA TCCTCATATC ATAATTTAAT TGATCTAGCA AATTCTCTAC 70090 |||||||||| ||||||| CCGCTTTTTT GAAGACT... .......... .......... .......... .......... 547 AAGTAAAATT TTCTTAATTT GTCAATAGAC AAGAAGCTTG AGAACAAGGA GGTTGCTGTC 70150 || |||||| || | |||| || |||||||| .......... .......... ........AC AAGAAGAATG AANACAAAGA CGTTGCTGTT 579 AATGAGTTCC TGCCTCCAAG CACTGCTGTC CAAGCCATAC AATATTCAAT GTACTTTTTT 70210 | || |||| |||||||||| ||||||||| | ||||| | | || || || GACGATTTCC TGCCTCCAAG TACTGCTGTC GATGCCATTC AGTACTCCAT .......... 629 GTGAATGCCT ATAGTAATTT GAGCTTGTGG TTGAAAGATT TTAACATTTG CATTTTTACT 70270 .......... .......... .......... .......... .......... .......... 629 TCCGTGCAGG GACCTTTATG CCGAATACAT ATTA 70304 | || || |||| | |||||||| |||| .........G GATCTGTATG CTGAATACAT ATTA 654 hqPGS_C08HBa0064M21.1+_SGN-E322639+ (68954 69016,69161 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70304) ******************************************************************************** EST sequence 48 +strand 530 n (File: SGN-E307804+) 1 TTGAATGAGA GGATTCTCTC ATCATTGTCA AGGAGGTCTG GCGCCGCTCA CCCATGGCAC 61 GATCTCNAGA TAGGACCTGA AGCTCCAAAT GTTTTCAATG TTGTCATTGA GATATCGAAA 121 GGCAGTAAAG TCAAATATGA GCTTGACAAG AAAACTGGTC TCATTAAGGT TGATCGCGTC 181 CTATACTCAT CAATGGTGTA CCCCCAGAAC TATGGCTTCA TTCCTCGGAC TTTATGTGAA 241 GATAATGACC CCATGGATGT ACTAGTGCTC ATGCAGGAGC CTGTTCTCCC AGGCTGTTTC 301 CTTCGAGCTA GGGCCATAGG TTTAATGCCT ATGATTGATC AGGTTAGGTT GATTGCTGCC 361 TGCAGGTTAA ACTTTATTTC CTATCTGATA AAAGGATTTT TAATCCAGGG TGAGAAGGAT 421 GATAAGATAA TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC 481 CAGCTTGCTC CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACTA Predicted gene structure (within gDNA segment 68581 to 70667): Exon 1 69181 69253 ( 73 n); cDNA 1 73 ( 73 n); score: 0.973 Intron 1 69254 69339 ( 86 n); Pd: 1.000 (s: 0.96), Pa: 0.963 (s: 0) Exon 2 69340 69368 ( 29 n); cDNA 74 102 ( 29 n); score: 1.000 Intron 2 69369 69448 ( 80 n); Pd: 0.782 (s: 0), Pa: 0.993 (s: 1.00) Exon 3 69449 69514 ( 66 n); cDNA 103 168 ( 66 n); score: 1.000 Intron 3 69515 69600 ( 86 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 69601 69708 ( 108 n); cDNA 169 276 ( 108 n); score: 1.000 Intron 4 69709 69794 ( 86 n); Pd: 0.978 (s: 1.00), Pa: 0.601 (s: 1.00) Exon 5 69795 70047 ( 253 n); cDNA 277 529 ( 253 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E307804+ 0.996 529 0.998 C PGS_C08HBa0064M21.1+_SGN-E307804+ (69181 69253,69340 69368,69449 69514,69601 69708,69795 70047) Alignment (genomic DNA sequence = upper lines): TTGAATGAGA GGATTCTCTC ATCATTGTCA AGGAGGTCTG TCGCCGCTCA CCCATGGCAC 69240 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTGAATGAGA GGATTCTCTC ATCATTGTCA AGGAGGTCTG GCGCCGCTCA CCCATGGCAC 60 GATCTCGAGA TAGGTAGGTA GTTTAATTCT CTTTTTTCAT TCATAATACT ATCAATTATT 69300 |||||| ||| ||| GATCTCNAGA TAG....... .......... .......... .......... .......... 73 AATGCTGCAT TCTCATCATT CCTAATTGTT GCTGTGTAGG ACCTGAAGCT CCAAATGTTT 69360 | |||||||||| |||||||||| .......... .......... .......... .........G ACCTGAAGCT CCAAATGTTT 94 TCAATGTTGT AAGTACAATT GTTTTACACT CCCCTGTGAT TGACATTGAT TATGATCCTA 69420 |||||||| TCAATGTT.. .......... .......... .......... .......... .......... 102 TCAGATTAAA GTAGCATTAT CCTTACAGGT CATTGAGATA TCGAAAGGCA GTAAAGTCAA 69480 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT CATTGAGATA TCGAAAGGCA GTAAAGTCAA 134 ATATGAGCTT GACAAGAAAA CTGGTCTCAT TAAGGCATGA CCTCAACACT CCTAATTAAG 69540 |||||||||| |||||||||| |||||||||| |||| ATATGAGCTT GACAAGAAAA CTGGTCTCAT TAAG...... .......... .......... 168 CAATGTGAAT GAATCTCTTC TTGTGTACAT GTTGTGTCAA TCTCCAATAT CTATTTTCAG 69600 .......... .......... .......... .......... .......... .......... 168 GTTGATCGCG TCCTATACTC ATCAATGGTG TACCCCCAGA ACTATGGCTT CATTCCTCGG 69660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCGCG TCCTATACTC ATCAATGGTG TACCCCCAGA ACTATGGCTT CATTCCTCGG 228 ACTTTATGTG AAGATAATGA CCCCATGGAT GTACTAGTGC TCATGCAGGT AACGGAATGC 69720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTTTATGTG AAGATAATGA CCCCATGGAT GTACTAGTGC TCATGCAG.. .......... 276 CCTATATCCT ATACAATACA ATGAATAGCA TTTTCTCCGG TTCAATTGAA TTGAGAAAAT 69780 .......... .......... .......... .......... .......... .......... 276 TGTTTCATCA ACAGGAGCCT GTTCTCCCAG GCTGTTTCCT TCGAGCTAGG GCCATAGGTT 69840 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAGCCT GTTCTCCCAG GCTGTTTCCT TCGAGCTAGG GCCATAGGTT 322 TAATGCCTAT GATTGATCAG GTTAGGTTGA TTGCTGCCTG CAGGTTAAAC TTTATTTCCT 69900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGCCTAT GATTGATCAG GTTAGGTTGA TTGCTGCCTG CAGGTTAAAC TTTATTTCCT 382 ATCTGATAAA AGGATTTTTA ATCCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG 69960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGATAAA AGGATTTTTA ATCCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG 442 CTGACGATCC AGAATATCGC CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG 70020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGACGATCC AGAATATCGC CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG 502 CAGAAATCCG CCGCTTTTTT GAAGACT 70047 |||||||||| |||||||||| ||||||| CAGAAATCCG CCGCTTTTTT GAAGACT 529 hqPGS_C08HBa0064M21.1+_SGN-E307804+ (69181 69253,69340 69368,69449 69514,69601 69708,69795 70047) ******************************************************************************** EST sequence 32 +strand 602 n (File: SGN-E341296+) 1 TTGCTGCTCA TCCTTGGCAT GACCTTGAGA TAGGACCTGA AGCTCCAAGC GTTTTCAATG 61 TTGTCATTGA GATTTCAAAA GGAAGCAAAG TCAAATATGA GCTGGACAAG AAAACCGGTC 121 TTATTAAGGT TGATCGCATC CTATATTCTT CAGTGGTTTA CCCTCAGAAC TATGGTTTCA 181 TTCCCCGAAC ACTCTGTGAA GATAATGACC CAATGGATGT ATTAGTCCTC ATGCAGGAAC 241 CTGTCCTTCC AGGTTGTTTC CTTCGAGCTA GGGCGATAGG CCTGATGCCT ATGATTGATC 301 AGGGAGAGAA AGATGACAAG ATCATAGCAG TGTGTGCTGA CGATCCAGAA TATCGCCACT 361 ACACTGATAT AAAACAGCTC CCCCCACACC GCCTTGCTGA AATTCGCCGC TTTTTTGAAG 421 ACTACAAGAA GAATGAAAAC AAAGACGTTG CTGTTGACGA TTTCCTGCCT CCAAGTACTG 481 CTGTCGATGC CATTCAGTAC TCCATGGATC TGTATGCTGA ATACATATTA CACAGCTTGA 541 GGAAGTAAGG TACAATGGGA CATGACATAT AAACAGAATA TCTATATGTA CAATTTGAAA 601 TG Predicted gene structure (within gDNA segment 66673 to 72924): Exon 1 69223 69253 ( 31 n); cDNA 3 33 ( 31 n); score: 0.806 Intron 1 69254 69339 ( 86 n); Pd: 1.000 (s: 0), Pa: 0.963 (s: 0) Exon 2 69340 69368 ( 29 n); cDNA 34 62 ( 29 n); score: 0.931 Intron 2 69369 69448 ( 80 n); Pd: 0.782 (s: 0), Pa: 0.993 (s: 0.90) Exon 3 69449 69514 ( 66 n); cDNA 63 128 ( 66 n); score: 0.894 Intron 3 69515 69600 ( 86 n); Pd: 1.000 (s: 0.90), Pa: 0.995 (s: 0.86) Exon 4 69601 69708 ( 108 n); cDNA 129 236 ( 108 n); score: 0.861 Intron 4 69709 69794 ( 86 n); Pd: 0.978 (s: 0.86), Pa: 0.601 (s: 0.84) Exon 5 69795 69860 ( 66 n); cDNA 237 302 ( 66 n); score: 0.879 Intron 5 69861 69926 ( 66 n); Pd: 0.980 (s: 0.90), Pa: 0.992 (s: 0.90) Exon 6 69927 70047 ( 121 n); cDNA 303 423 ( 121 n); score: 0.876 Intron 6 70048 70118 ( 71 n); Pd: 0.976 (s: 0.82), Pa: 0.997 (s: 0.82) Exon 7 70119 70200 ( 82 n); cDNA 424 505 ( 82 n); score: 0.805 Intron 7 70201 70279 ( 79 n); Pd: 0.903 (s: 0.80), Pa: 0.997 (s: 0) Exon 8 70280 70318 ( 39 n); cDNA 506 544 ( 39 n); score: 0.795 MATCH C08HBa0064M21.1+ SGN-E341296+ 0.862 542 0.900 C PGS_C08HBa0064M21.1+_SGN-E341296+ (69223 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70318) Alignment (genomic DNA sequence = upper lines): GCCGCTCACC CATGGCACGA TCTCGAGATA GGTAGGTAGT TTAATTCTCT TTTTTCATTC 69282 || ||||| | | ||||| || || |||||| | GCTGCTCATC CTTGGCATGA CCTTGAGATA G......... .......... .......... 33 ATAATACTAT CAATTATTAA TGCTGCATTC TCATCATTCC TAATTGTTGC TGTGTAGGAC 69342 ||| .......... .......... .......... .......... .......... .......GAC 36 CTGAAGCTCC AAATGTTTTC AATGTTGTAA GTACAATTGT TTTACACTCC CCTGTGATTG 69402 |||||||||| || |||||| |||||| CTGAAGCTCC AAGCGTTTTC AATGTT.... .......... .......... .......... 62 ACATTGATTA TGATCCTATC AGATTAAAGT AGCATTATCC TTACAGGTCA TTGAGATATC 69462 |||| ||||||| || .......... .......... .......... .......... ......GTCA TTGAGATTTC 76 GAAAGGCAGT AAAGTCAAAT ATGAGCTTGA CAAGAAAACT GGTCTCATTA AGGCATGACC 69522 ||||| || |||||||||| ||||||| || ||||||||| ||||| |||| || AAAAGGAAGC AAAGTCAAAT ATGAGCTGGA CAAGAAAACC GGTCTTATTA AG........ 128 TCAACACTCC TAATTAAGCA ATGTGAATGA ATCTCTTCTT GTGTACATGT TGTGTCAATC 69582 .......... .......... .......... .......... .......... .......... 128 TCCAATATCT ATTTTCAGGT TGATCGCGTC CTATACTCAT CAATGGTGTA CCCCCAGAAC 69642 || ||||||| || ||||| || | || |||| || ||| |||||| .......... ........GT TGATCGCATC CTATATTCTT CAGTGGTTTA CCCTCAGAAC 170 TATGGCTTCA TTCCTCGGAC TTTATGTGAA GATAATGACC CCATGGATGT ACTAGTGCTC 69702 ||||| |||| |||| || || | |||||| |||||||||| | |||||||| | |||| ||| TATGGTTTCA TTCCCCGAAC ACTCTGTGAA GATAATGACC CAATGGATGT ATTAGTCCTC 230 ATGCAGGTAA CGGAATGCCC TATATCCTAT ACAATACAAT GAATAGCATT TTCTCCGGTT 69762 |||||| ATGCAG.... .......... .......... .......... .......... .......... 236 CAATTGAATT GAGAAAATTG TTTCATCAAC AGGAGCCTGT TCTCCCAGGC TGTTTCCTTC 69822 || ||||| || ||||| |||||||||| .......... .......... .......... ..GAACCTGT CCTTCCAGGT TGTTTCCTTC 264 GAGCTAGGGC CATAGGTTTA ATGCCTATGA TTGATCAGGT TAGGTTGATT GCTGCCTGCA 69882 |||||||||| ||||| | |||||||||| |||||||| GAGCTAGGGC GATAGGCCTG ATGCCTATGA TTGATCAG.. .......... .......... 302 GGTTAAACTT TATTTCCTAT CTGATAAAAG GATTTTTAAT CCAGGGTGAG AAGGATGATA 69942 || ||| || ||||| | .......... .......... .......... .......... ....GGAGAG AAAGATGACA 318 AGATAATAGC AGTTTGTGCT GACGATCCAG AATATCGCCA CTACACTGAT ATTAACCAGC 70002 |||| ||||| ||| |||||| |||||||||| |||||||||| |||||||||| || || |||| AGATCATAGC AGTGTGTGCT GACGATCCAG AATATCGCCA CTACACTGAT ATAAAACAGC 378 TTGCTCCTCA CCGTCTGGCA GAAATCCGCC GCTTTTTTGA AGACTGTATC CTCATATCAT 70062 | | || || ||| || || ||||| |||| |||||||||| ||||| TCCCCCCACA CCGCCTTGCT GAAATTCGCC GCTTTTTTGA AGACT..... .......... 423 AATTTAATTG ATCTAGCAAA TTCTCTACAA GTAAAATTTT CTTAATTTGT CAATAGACAA 70122 |||| .......... .......... .......... .......... .......... ......ACAA 427 GAAGCTTGAG AACAAGGAGG TTGCTGTCAA TGAGTTCCTG CCTCCAAGCA CTGCTGTCCA 70182 |||| ||| ||||| || | ||||||| | || |||||| |||||||| | |||||||| | GAAGAATGAA AACAAAGACG TTGCTGTTGA CGATTTCCTG CCTCCAAGTA CTGCTGTCGA 487 AGCCATACAA TATTCAATGT ACTTTTTTGT GAATGCCTAT AGTAATTTGA GCTTGTGGTT 70242 ||||| || || || || TGCCATTCAG TACTCCAT.. .......... .......... .......... .......... 505 GAAAGATTTT AACATTTGCA TTTTTACTTC CGTGCAGGGA CCTTTATGCC GAATACATAT 70302 ||| || ||||| |||||||||| .......... .......... .......... .......GGA TCTGTATGCT GAATACATAT 528 TACAGACACT GAGAAA 70318 |||| | | ||| || TACACAGCTT GAGGAA 544 hqPGS_C08HBa0064M21.1+_SGN-E341296+ (69223 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70318) ******************************************************************************** EST sequence 25 +strand 648 n (File: SGN-E339227+) 1 TCTCATTAAG GTTGATCGCG TCCTATACTC ATCAATGGTG TACCCCCAGA ACTATGGCTT 61 CATTCCTCGG ACTTTATGTG AAGATAATGA CCCCATGGAT GTACTAGTGC TCATGCAGGA 121 GCCTGTTCTC CCAGGCTGTT TCCTTCGAGC TAGGGCCATA GGTTTAATGC CTATGATTGA 181 TCAGGGTGAG AAGGATGATA AGATAATAGC AGTTTGTGCT GACGATCCAG AATATCGCCA 241 CTACACTGAT ATTAACCAGC TTGCTCCTCA CCGTCTGGCA GAAATCCGCC GCTTTTTTGA 301 AGACTACAAG AAGCTTGAGA ACAAGGAGGT TGCTGTCAAT GAGTTCCTGC CTCCAAGCAC 361 TGCTGTCCAA GCCATACAAT ATTCAATGGA CCTTTATGCC GAATACATAT TACAGACACT 421 GAGAAAGTAA TCTACACTTT TATGTTATGA TTGTTGTGTT TATCTTTCAT AAGTATTTTC 481 TTGATTTTTG TGGGGGGGAA GGGGTGGAAA ATTCTATAGC GCATTACATG TCATTCAATT 541 CAGTACTTGT AGTCAATTGT ATTGAAACTT CAAGTACCGA CTAGTCTATT AGCATGTTGA 601 ATCCTATGGG CTTGGTTGAT CCACACCAAA GATATAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 68919 to 71255): Exon 1 69505 69514 ( 10 n); cDNA 1 10 ( 10 n); score: 1.000 Intron 1 69515 69600 ( 86 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 69601 69708 ( 108 n); cDNA 11 118 ( 108 n); score: 1.000 Intron 2 69709 69794 ( 86 n); Pd: 0.978 (s: 1.00), Pa: 0.601 (s: 1.00) Exon 3 69795 69860 ( 66 n); cDNA 119 184 ( 66 n); score: 1.000 Intron 3 69861 69926 ( 66 n); Pd: 0.980 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 69927 70047 ( 121 n); cDNA 185 305 ( 121 n); score: 1.000 Intron 4 70048 70118 ( 71 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 70119 70200 ( 82 n); cDNA 306 387 ( 82 n); score: 1.000 Intron 5 70201 70279 ( 79 n); Pd: 0.903 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 70280 70524 ( 245 n); cDNA 388 635 ( 248 n); score: 0.957 PPA cDNA 636 648 MATCH C08HBa0064M21.1+ SGN-E339227+ 0.983 632 0.975 C PGS_C08HBa0064M21.1+_SGN-E339227+ (69505 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70524) Alignment (genomic DNA sequence = upper lines): TCTCATTAAG GCATGACCTC AACACTCCTA ATTAAGCAAT GTGAATGAAT CTCTTCTTGT 69564 |||||||||| TCTCATTAAG .......... .......... .......... .......... .......... 10 GTACATGTTG TGTCAATCTC CAATATCTAT TTTCAGGTTG ATCGCGTCCT ATACTCATCA 69624 |||| |||||||||| |||||||||| .......... .......... .......... ......GTTG ATCGCGTCCT ATACTCATCA 34 ATGGTGTACC CCCAGAACTA TGGCTTCATT CCTCGGACTT TATGTGAAGA TAATGACCCC 69684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGTACC CCCAGAACTA TGGCTTCATT CCTCGGACTT TATGTGAAGA TAATGACCCC 94 ATGGATGTAC TAGTGCTCAT GCAGGTAACG GAATGCCCTA TATCCTATAC AATACAATGA 69744 |||||||||| |||||||||| |||| ATGGATGTAC TAGTGCTCAT GCAG...... .......... .......... .......... 118 ATAGCATTTT CTCCGGTTCA ATTGAATTGA GAAAATTGTT TCATCAACAG GAGCCTGTTC 69804 |||||||||| .......... .......... .......... .......... .......... GAGCCTGTTC 128 TCCCAGGCTG TTTCCTTCGA GCTAGGGCCA TAGGTTTAAT GCCTATGATT GATCAGGTTA 69864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCCAGGCTG TTTCCTTCGA GCTAGGGCCA TAGGTTTAAT GCCTATGATT GATCAG.... 184 GGTTGATTGC TGCCTGCAGG TTAAACTTTA TTTCCTATCT GATAAAAGGA TTTTTAATCC 69924 .......... .......... .......... .......... .......... .......... 184 AGGGTGAGAA GGATGATAAG ATAATAGCAG TTTGTGCTGA CGATCCAGAA TATCGCCACT 69984 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GGTGAGAA GGATGATAAG ATAATAGCAG TTTGTGCTGA CGATCCAGAA TATCGCCACT 242 ACACTGATAT TAACCAGCTT GCTCCTCACC GTCTGGCAGA AATCCGCCGC TTTTTTGAAG 70044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGATAT TAACCAGCTT GCTCCTCACC GTCTGGCAGA AATCCGCCGC TTTTTTGAAG 302 ACTGTATCCT CATATCATAA TTTAATTGAT CTAGCAAATT CTCTACAAGT AAAATTTTCT 70104 ||| ACT....... .......... .......... .......... .......... .......... 305 TAATTTGTCA ATAGACAAGA AGCTTGAGAA CAAGGAGGTT GCTGTCAATG AGTTCCTGCC 70164 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....ACAAGA AGCTTGAGAA CAAGGAGGTT GCTGTCAATG AGTTCCTGCC 351 TCCAAGCACT GCTGTCCAAG CCATACAATA TTCAATGTAC TTTTTTGTGA ATGCCTATAG 70224 |||||||||| |||||||||| |||||||||| |||||| TCCAAGCACT GCTGTCCAAG CCATACAATA TTCAAT.... .......... .......... 387 TAATTTGAGC TTGTGGTTGA AAGATTTTAA CATTTGCATT TTTACTTCCG TGCAGGGACC 70284 ||||| .......... .......... .......... .......... .......... .....GGACC 392 TTTATGCCGA ATACATATTA CAGACACTGA GAAAGTAATC TACACTTTTA TGTTATGATT 70344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGCCGA ATACATATTA CAGACACTGA GAAAGTAATC TACACTTTTA TGTTATGATT 452 GTTGTGTTTA TCTTTCATAA GTATTTTCTT TGTATTTGTG GGGGGG-AGG GGT-G-AAAT 70401 |||||||||| |||||||||| |||||||||| | |||||| |||||| ||| ||| | |||| GTTGTGTTTA TCTTTCATAA GTATTTTCTT GATTTTTGTG GGGGGGAAGG GGTGGAAAAT 512 TCTATAGCGC ATTACATGTC ATTCAATTCA GTACTTGTAG TCAATTGTAT TGAAACTTCA 70461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATAGCGC ATTACATGTC ATTCAATTCA GTACTTGTAG TCAATTGTAT TGAAACTTCA 572 AGTACCGACT AGTCTATTAG CATGTTGAAT CCTATGGGCT TGGTTGATCC ACACCAAAGA 70521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACCGACT AGTCTATTAG CATGTTGAAT CCTATGGGCT TGGTTGATCC ACACCAAAGA 632 TAT 70524 ||| TAT 635 hqPGS_C08HBa0064M21.1+_SGN-E339227+ (69505 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70524) ******************************************************************************** EST sequence 12 +strand 548 n (File: SGN-E351795+) 1 TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 61 GAGCCTGTTC TCCCAGGCTG TTTCCTTCGA GCTAGGGCCA TAGGTTTAAT GCCTATGATT 121 GATCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG CTGACGATCC AGAATATCGC 181 CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG CAGAAATCCG CCGCTTTTTT 241 GAAGACTACA AGAAGCTTGA GAACAAGGAG GTTGCTGTCA ATGAGTTCCT GCCTCCAAGC 301 ACTGCTGTCC AAGCCATACA ATATTCAATG GACCTTTATG CCGAATACAT ATTACAGACA 361 CTGAGAAAGT AATCTACACT TTTATGTTAT GATTGTTGTG TTTATCTTTC ATAAGTATTT 421 TCTTTGTATT TGTGGGGGGG AGGGGTGAAA TTCTATAGCG CATTACATGT CATTCAATTC 481 AGTACTTGTA GTCAATTGTA TTGAAACTTC AAGTACCGAC TAGTCTATTA GCATGTTGAA 541 AAAAAAAA Predicted gene structure (within gDNA segment 69049 to 71180): Exon 1 69649 69708 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 69709 69794 ( 86 n); Pd: 0.978 (s: 1.00), Pa: 0.601 (s: 1.00) Exon 2 69795 69860 ( 66 n); cDNA 61 126 ( 66 n); score: 1.000 Intron 2 69861 69926 ( 66 n); Pd: 0.980 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 69927 70047 ( 121 n); cDNA 127 247 ( 121 n); score: 1.000 Intron 3 70048 70118 ( 71 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 70119 70200 ( 82 n); cDNA 248 329 ( 82 n); score: 1.000 Intron 4 70201 70279 ( 79 n); Pd: 0.903 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 70280 70489 ( 210 n); cDNA 330 539 ( 210 n); score: 1.000 MATCH C08HBa0064M21.1+ SGN-E351795+ 1.000 539 0.984 C PGS_C08HBa0064M21.1+_SGN-E351795+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) Alignment (genomic DNA sequence = upper lines): TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 69708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 60 GTAACGGAAT GCCCTATATC CTATACAATA CAATGAATAG CATTTTCTCC GGTTCAATTG 69768 .......... .......... .......... .......... .......... .......... 60 AATTGAGAAA ATTGTTTCAT CAACAGGAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 69828 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 94 GGGCCATAGG TTTAATGCCT ATGATTGATC AGGTTAGGTT GATTGCTGCC TGCAGGTTAA 69888 |||||||||| |||||||||| |||||||||| || GGGCCATAGG TTTAATGCCT ATGATTGATC AG........ .......... .......... 126 ACTTTATTTC CTATCTGATA AAAGGATTTT TAATCCAGGG TGAGAAGGAT GATAAGATAA 69948 || |||||||||| |||||||||| .......... .......... .......... ........GG TGAGAAGGAT GATAAGATAA 148 TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 70008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 208 CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACTG TATCCTCATA TCATAATTTA 70068 |||||||||| |||||||||| |||||||||| ||||||||| CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACT. .......... .......... 247 ATTGATCTAG CAAATTCTCT ACAAGTAAAA TTTTCTTAAT TTGTCAATAG ACAAGAAGCT 70128 |||||||||| .......... .......... .......... .......... .......... ACAAGAAGCT 257 TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 70188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 317 ACAATATTCA ATGTACTTTT TTGTGAATGC CTATAGTAAT TTGAGCTTGT GGTTGAAAGA 70248 |||||||||| || ACAATATTCA AT........ .......... .......... .......... .......... 329 TTTTAACATT TGCATTTTTA CTTCCGTGCA GGGACCTTTA TGCCGAATAC ATATTACAGA 70308 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGACCTTTA TGCCGAATAC ATATTACAGA 358 CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 70368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 418 TTTCTTTGTA TTTGTGGGGG GGAGGGGTGA AATTCTATAG CGCATTACAT GTCATTCAAT 70428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTGTA TTTGTGGGGG GGAGGGGTGA AATTCTATAG CGCATTACAT GTCATTCAAT 478 TCAGTACTTG TAGTCAATTG TATTGAAACT TCAAGTACCG ACTAGTCTAT TAGCATGTTG 70488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTACTTG TAGTCAATTG TATTGAAACT TCAAGTACCG ACTAGTCTAT TAGCATGTTG 538 A 70489 | A 539 hqPGS_C08HBa0064M21.1+_SGN-E351795+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) ******************************************************************************** EST sequence 65 +strand 549 n (File: SGN-E356409+) 1 TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 61 GAGCCTGTTC TCCCAGGCTG TTTCCTTCGA GCTAGGGCCA TAGGTTTAAT GCCTATGATT 121 GATCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG CTGACGATCC AGAATATCGC 181 CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG CAGAAATCCG CCGCTTTTTT 241 GAAGACTACA AGAAGCTTGA GAACAAGGAG GTTGCTGTCA ATGAGTTCCT GCCTCCAAGC 301 ACTGCTGTCC AAGCCATACA ATATTCAATG GACCTTTATG CCGAATACAT ATTACAGACA 361 CTGAGAAAGT AATCTACACT TTTATGTTAT GATTGTTGTG TTTATCTTTC ATAAGTATTT 421 TCTTTGTATT TGTGGGGGGG GAGGGGTGAA ATTCTATAGC GCATTACATG TCATTCAATT 481 CAGTACTTGT AGTCAATTGT ATTGAAACTT CAAGTACCGA CTAGTCTATT AGCATGTTGA 541 AAAAAAAAA Predicted gene structure (within gDNA segment 69049 to 71180): Exon 1 69649 69708 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 69709 69794 ( 86 n); Pd: 0.978 (s: 1.00), Pa: 0.601 (s: 1.00) Exon 2 69795 69860 ( 66 n); cDNA 61 126 ( 66 n); score: 1.000 Intron 2 69861 69926 ( 66 n); Pd: 0.980 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 69927 70047 ( 121 n); cDNA 127 247 ( 121 n); score: 1.000 Intron 3 70048 70118 ( 71 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 70119 70200 ( 82 n); cDNA 248 329 ( 82 n); score: 1.000 Intron 4 70201 70279 ( 79 n); Pd: 0.903 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 70280 70489 ( 210 n); cDNA 330 540 ( 211 n); score: 0.988 MATCH C08HBa0064M21.1+ SGN-E356409+ 0.995 539 0.982 C PGS_C08HBa0064M21.1+_SGN-E356409+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) Alignment (genomic DNA sequence = upper lines): TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 69708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 60 GTAACGGAAT GCCCTATATC CTATACAATA CAATGAATAG CATTTTCTCC GGTTCAATTG 69768 .......... .......... .......... .......... .......... .......... 60 AATTGAGAAA ATTGTTTCAT CAACAGGAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 69828 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 94 GGGCCATAGG TTTAATGCCT ATGATTGATC AGGTTAGGTT GATTGCTGCC TGCAGGTTAA 69888 |||||||||| |||||||||| |||||||||| || GGGCCATAGG TTTAATGCCT ATGATTGATC AG........ .......... .......... 126 ACTTTATTTC CTATCTGATA AAAGGATTTT TAATCCAGGG TGAGAAGGAT GATAAGATAA 69948 || |||||||||| |||||||||| .......... .......... .......... ........GG TGAGAAGGAT GATAAGATAA 148 TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 70008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 208 CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACTG TATCCTCATA TCATAATTTA 70068 |||||||||| |||||||||| |||||||||| ||||||||| CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACT. .......... .......... 247 ATTGATCTAG CAAATTCTCT ACAAGTAAAA TTTTCTTAAT TTGTCAATAG ACAAGAAGCT 70128 |||||||||| .......... .......... .......... .......... .......... ACAAGAAGCT 257 TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 70188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 317 ACAATATTCA ATGTACTTTT TTGTGAATGC CTATAGTAAT TTGAGCTTGT GGTTGAAAGA 70248 |||||||||| || ACAATATTCA AT........ .......... .......... .......... .......... 329 TTTTAACATT TGCATTTTTA CTTCCGTGCA GGGACCTTTA TGCCGAATAC ATATTACAGA 70308 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGACCTTTA TGCCGAATAC ATATTACAGA 358 CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 70368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 418 TTTCTTTGTA TTTGT-GGGG GGGAGGGGTG AAATTCTATA GCGCATTACA TGTCATTCAA 70427 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTGTA TTTGTGGGGG GGGAGGGGTG AAATTCTATA GCGCATTACA TGTCATTCAA 478 TTCAGTACTT GTAGTCAATT GTATTGAAAC TTCAAGTACC GACTAGTCTA TTAGCATGTT 70487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTACTT GTAGTCAATT GTATTGAAAC TTCAAGTACC GACTAGTCTA TTAGCATGTT 538 GA 70489 || GA 540 hqPGS_C08HBa0064M21.1+_SGN-E356409+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) ******************************************************************************** EST sequence 41 +strand 549 n (File: SGN-E352888+) 1 TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 61 GAGCCTGTTC TCCCAGGCTG TTTCCTTCGA GCTAGGGCCA TAGGTTTAAT GCCTATGATT 121 GATCAGGGTG AGAAGGATGA TAAGATAATA GCAGTTTGTG CTGACGATCC AGAATATCGC 181 CACTACACTG ATATTAACCA GCTTGCTCCT CACCGTCTGG CAGAAATCCG CCGCTTTTTT 241 GAAGACTACA AGAAGCTTGA GAACAAGGAG GTTGCTGTCA ATGAGTTCCT GCCTCCAAGC 301 ACTGCTGTCC AAGCCATACA ATATTCAATG GACCTTTATG CCGAATACAT ATTACAGACA 361 CTGAGAAAGT AATCTACACT TTTATGTTAT GATTGTTGTG TTTATCTTTC ATAAGTATTT 421 TCTTTGTATT TGTGGGGGGG GAGGGGTGAA ATTCTATAGC GCATTACATG TCATTCAATT 481 CAGTACTTGT AGTCAATTGT ATTGAAACTT CAAGTACCGA CTAGTCTATT AGCATGTTTG 541 AAAAAAAAA Predicted gene structure (within gDNA segment 69049 to 71207): Exon 1 69649 69708 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 69709 69794 ( 86 n); Pd: 0.978 (s: 1.00), Pa: 0.601 (s: 1.00) Exon 2 69795 69860 ( 66 n); cDNA 61 126 ( 66 n); score: 1.000 Intron 2 69861 69926 ( 66 n); Pd: 0.980 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 69927 70047 ( 121 n); cDNA 127 247 ( 121 n); score: 1.000 Intron 3 70048 70118 ( 71 n); Pd: 0.976 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 70119 70200 ( 82 n); cDNA 248 329 ( 82 n); score: 1.000 Intron 4 70201 70279 ( 79 n); Pd: 0.903 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 70280 70484 ( 205 n); cDNA 330 535 ( 206 n); score: 0.988 MATCH C08HBa0064M21.1+ SGN-E352888+ 0.995 534 0.973 C PGS_C08HBa0064M21.1+_SGN-E352888+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70484) Alignment (genomic DNA sequence = upper lines): TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 69708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCCTC GGACTTTATG TGAAGATAAT GACCCCATGG ATGTACTAGT GCTCATGCAG 60 GTAACGGAAT GCCCTATATC CTATACAATA CAATGAATAG CATTTTCTCC GGTTCAATTG 69768 .......... .......... .......... .......... .......... .......... 60 AATTGAGAAA ATTGTTTCAT CAACAGGAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 69828 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAGC CTGTTCTCCC AGGCTGTTTC CTTCGAGCTA 94 GGGCCATAGG TTTAATGCCT ATGATTGATC AGGTTAGGTT GATTGCTGCC TGCAGGTTAA 69888 |||||||||| |||||||||| |||||||||| || GGGCCATAGG TTTAATGCCT ATGATTGATC AG........ .......... .......... 126 ACTTTATTTC CTATCTGATA AAAGGATTTT TAATCCAGGG TGAGAAGGAT GATAAGATAA 69948 || |||||||||| |||||||||| .......... .......... .......... ........GG TGAGAAGGAT GATAAGATAA 148 TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 70008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAGTTTG TGCTGACGAT CCAGAATATC GCCACTACAC TGATATTAAC CAGCTTGCTC 208 CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACTG TATCCTCATA TCATAATTTA 70068 |||||||||| |||||||||| |||||||||| ||||||||| CTCACCGTCT GGCAGAAATC CGCCGCTTTT TTGAAGACT. .......... .......... 247 ATTGATCTAG CAAATTCTCT ACAAGTAAAA TTTTCTTAAT TTGTCAATAG ACAAGAAGCT 70128 |||||||||| .......... .......... .......... .......... .......... ACAAGAAGCT 257 TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 70188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAACAAG GAGGTTGCTG TCAATGAGTT CCTGCCTCCA AGCACTGCTG TCCAAGCCAT 317 ACAATATTCA ATGTACTTTT TTGTGAATGC CTATAGTAAT TTGAGCTTGT GGTTGAAAGA 70248 |||||||||| || ACAATATTCA AT........ .......... .......... .......... .......... 329 TTTTAACATT TGCATTTTTA CTTCCGTGCA GGGACCTTTA TGCCGAATAC ATATTACAGA 70308 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGACCTTTA TGCCGAATAC ATATTACAGA 358 CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 70368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGAGAAA GTAATCTACA CTTTTATGTT ATGATTGTTG TGTTTATCTT TCATAAGTAT 418 TTTCTTTGTA TTTGT-GGGG GGGAGGGGTG AAATTCTATA GCGCATTACA TGTCATTCAA 70427 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTGTA TTTGTGGGGG GGGAGGGGTG AAATTCTATA GCGCATTACA TGTCATTCAA 478 TTCAGTACTT GTAGTCAATT GTATTGAAAC TTCAAGTACC GACTAGTCTA TTAGCAT 70484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTCAGTACTT GTAGTCAATT GTATTGAAAC TTCAAGTACC GACTAGTCTA TTAGCAT 535 hqPGS_C08HBa0064M21.1+_SGN-E352888+ (69649 69708,69795 69860,69927 70047,70119 70200,70280 70484) ******************************************************************************** EST sequence 122 +strand 618 n (File: SGN-E311216+) 1 ATTCTTTTTC GTCGCCGCCG CCGCATAGTG GAGCATCCTC CCAATTCTCG ACTAATGACA 61 TAATGGACCA GGTCAAAACT CAGCTTGAAC AGGCATACGC CGAGCAATTT CTCGAGACGG 121 TGAGGGACAA ATGCTTTGAC AAGTGTATCA CCAAACCAGG GAGCAGTCTA AGTGGAAGTG 181 AAGGTAGTTG CATCTCAAGG TGTGTTGATC GGTATATCGA GGCCACTGGT ATAATTAGCA 241 AAGCTCTCTT CAGTCAACGC TGAAACTGTA GTTGGGTAGA TCTCAAGGCT TGCTTGCTCA 301 GTAAATGCTG GAATGCATTA ATTAATCTTT GATACCCTTT GTCATTTTCC GTTTTAAAGA 361 AGGTTCTCAA GTATTTTGTA AAAGATGTTC TTCATTAATA CTTTGTTGTT GATGGACAGC 421 CAAATTTTTT TTTTTATCTA TAGCGTACTA TTAAGATTTA CATGGGCAAT GTTGCACTTT 481 GCCCTGGTGT TGTATACGTG CTTTCATGCA TAAGTTATTT AGTAGGATTG AGGAAACCAT 541 AAGTGCATGA AGATGTCATA AAAGAAAATC TTATAATTTC CTGCATTTGG CGCAAGGTGT 601 TATCTGGGCC CTAATTTA Predicted gene structure (within gDNA segment 74065 to 70217): Exon 1 73465 73350 ( 116 n); cDNA 1 116 ( 116 n); score: 1.000 Intron 1 73349 71329 (2021 n); Pd: 0.999 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 71328 70827 ( 502 n); cDNA 117 618 ( 502 n); score: 1.000 MATCH C08HBa0064M21.1- SGN-E311216+ 1.000 618 1.000 C PGS_C08HBa0064M21.1-_SGN-E311216+ (73465 73350,71328 70827) Alignment (genomic DNA sequence = upper lines): ATTCTTTTTC GTCGCCGCCG CCGCATAGTG GAGCATCCTC CCAATTCTCG ACTAATGACA 73406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTTTTTC GTCGCCGCCG CCGCATAGTG GAGCATCCTC CCAATTCTCG ACTAATGACA 60 TAATGGACCA GGTCAAAACT CAGCTTGAAC AGGCATACGC CGAGCAATTT CTCGAGGTTT 73346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAATGGACCA GGTCAAAACT CAGCTTGAAC AGGCATACGC CGAGCAATTT CTCGAG.... 116 GATCTGATAT CTATTTTCAT CTCCTTTTCT CTGTCATCGT TAATTTTTTT TTCAAAACTG 73286 .......... .......... .......... .......... .......... .......... 116 TGATGCCGCA GTCTGTCACC TGTTTTTGAG TAATTAGTTG CTGGGTAATT ACTGATCTGC 73226 .......... .......... .......... .......... .......... .......... 116 GCTATGATGT ATGAGAGGTT ATGTCCGAAA AAAAGGTGCT AGCAAAACAA TATATTTTTG 73166 .......... .......... .......... .......... .......... .......... 116 GTATTTAAGC CTTTGTACTT GCTATAAGTT TTAATTATTC CTTGGCATTT GGCCTTAGGA 73106 .......... .......... .......... .......... .......... .......... 116 GCATCCAACA CCTTTAATTA ATTTTTTTTA GAGTTTGATT GTATGCTTTC CACGTACGAA 73046 .......... .......... .......... .......... .......... .......... 116 ATTGTCTGCT TATGTCAAAT TATTCATGAA TAATTATATA TATTTCCATA TTTTTTTCTA 72986 .......... .......... .......... .......... .......... .......... 116 ATAACAATTT CCAGTTACCA TTTAGGGATG TTGTGTAATT TTTATCCTAA ATCTTAGGTT 72926 .......... .......... .......... .......... .......... .......... 116 GACTGAAATC TGCATTACAA TCTGTCTGTC CTAGTATTCC AAAATATTTA ACTTTGGTCC 72866 .......... .......... .......... .......... .......... .......... 116 GTTTGAACTT TTCTCCCTTT AATAATTAAC TGTAAATATG GATTGCTACT ACTTTATAGT 72806 .......... .......... .......... .......... .......... .......... 116 TTATACCTAG TCAAACTTAT TTGGAGTCAG CTAAATGAAA TTGTTGTTTT TATTTGGCTC 72746 .......... .......... .......... .......... .......... .......... 116 ATTTCCTTTC ATTTCAAGGA GGTTCTCTAG ACCAAAAAGT TCTCTATATC TCTCACTCTT 72686 .......... .......... .......... .......... .......... .......... 116 TCACGAGTAC CTTGTACCTC TCACCAACAC ATGAACTGGT GACTTTGTCT ACCAAGGTTA 72626 .......... .......... .......... .......... .......... .......... 116 TGTCAGATGA TGAGAAATTA CCTAGCTTAA TTTGTTTCTT CTGGGATTTG AACCTAAGAT 72566 .......... .......... .......... .......... .......... .......... 116 CTCATGGTTC TCCCCCTCCC CACTTAATTG ATCACTAAGT TAGTAGACAC TTGTCTTTTT 72506 .......... .......... .......... .......... .......... .......... 116 TTCTTTTTAG TTTGCTTGGT TAATTCAGTA TTCATTTTGC AGAAATTGTA GATTCTTTAG 72446 .......... .......... .......... .......... .......... .......... 116 ACCAACTTGT TGGGATTGAG GAATAGTAGG ATTATACAAA ATGCAATGGC TCACCCATCT 72386 .......... .......... .......... .......... .......... .......... 116 TAGAATTAAT TTGCACACTT GTTCAATTAA TCAATTGTTC CATTAATAAA TCCTATCTTT 72326 .......... .......... .......... .......... .......... .......... 116 TAACCAACTG TTTGCACCTG ACAATAGATT TAATTGTTAG GAGAGTGGAA ATCTACAGTG 72266 .......... .......... .......... .......... .......... .......... 116 GTTTGACTTC CCCAGATCCA CTTCCCTTTT TGATGAGGAA AATATAATGT GTTGAGGGTA 72206 .......... .......... .......... .......... .......... .......... 116 ACAATACAAT TGTCCTTCTT AGTAACTGCA CAAGTTGGGT AGTGTAGATA TTTTGGGACT 72146 .......... .......... .......... .......... .......... .......... 116 GAGGAACTAT GTTAGCATCG TCTTGTCTTT AAATACTTGA GCTAATATAT AATTATGACT 72086 .......... .......... .......... .......... .......... .......... 116 ATTGATTGAT GTAACTGGCA TTTGGTAGTT TCAAATTTTG GTCATCCATG ACATCTTTTA 72026 .......... .......... .......... .......... .......... .......... 116 AAATATCTCA TCCTAGCATA TTTCTCAACA ACACATAAAA AGTAAAATAC AAATAAGAGT 71966 .......... .......... .......... .......... .......... .......... 116 TATGGCGTTC AATCTTATAA TACGAGAAAC TTAAGCCATG TGTAGCCTTT CGAGGTTCCT 71906 .......... .......... .......... .......... .......... .......... 116 TCATTATTTC AGCAGGGGAA GAATAGCTTC TCAAGCAATT ATTGACACCA TGAGAGATTA 71846 .......... .......... .......... .......... .......... .......... 116 CCTATTAGTA TTTTTCCTTA TGAGAATCTG AAGTGGCCAG TCAATTCATT TACCATACTC 71786 .......... .......... .......... .......... .......... .......... 116 TTACTGTGTT GTACTCTCTA ATCTCATATT TCTTTGATAT TCCGATTTCA CAATCAAGTC 71726 .......... .......... .......... .......... .......... .......... 116 ATTTGGTTTG CTAACTGTTA TTTATTCGGT GACTGCGTTA AACTGTAGAT GACACTTGAA 71666 .......... .......... .......... .......... .......... .......... 116 TAACTGACAT TATAGTTTGG TTTCAAGTTA CTACTTGGAA CTTTGCCTGC AACCTTTATT 71606 .......... .......... .......... .......... .......... .......... 116 TTAAAGGTTT GCTTGTGTTC TTGATGTGGA TACTTTTCTG CTCCAGTGAT AGATCTGCAT 71546 .......... .......... .......... .......... .......... .......... 116 TTTTCAATCA TGGGTTCTTC AAATTGGAAT CACTTAACAA TGGTACCTTG ATTATGTGAA 71486 .......... .......... .......... .......... .......... .......... 116 TGCATCATAC ATAATTTTTT ATGGACTGAA CATCTTCTGG AGAAGTAGAT TGAGTTACTG 71426 .......... .......... .......... .......... .......... .......... 116 TCATTGTATA AATAAGATTC TGCAACTTGT GATGTATGTA AGTTCAGCAT GTTGCAGAAG 71366 .......... .......... .......... .......... .......... .......... 116 ATATAATAGT AAGTTACTAA CCCTTCAATT ATCTCAGACG GTGAGGGACA AATGCTTTGA 71306 ||| |||||||||| |||||||||| .......... .......... .......... .......ACG GTGAGGGACA AATGCTTTGA 139 CAAGTGTATC ACCAAACCAG GGAGCAGTCT AAGTGGAAGT GAAGGTAGTT GCATCTCAAG 71246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGTATC ACCAAACCAG GGAGCAGTCT AAGTGGAAGT GAAGGTAGTT GCATCTCAAG 199 GTGTGTTGAT CGGTATATCG AGGCCACTGG TATAATTAGC AAAGCTCTCT TCAGTCAACG 71186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGTTGAT CGGTATATCG AGGCCACTGG TATAATTAGC AAAGCTCTCT TCAGTCAACG 259 CTGAAACTGT AGTTGGGTAG ATCTCAAGGC TTGCTTGCTC AGTAAATGCT GGAATGCATT 71126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAACTGT AGTTGGGTAG ATCTCAAGGC TTGCTTGCTC AGTAAATGCT GGAATGCATT 319 AATTAATCTT TGATACCCTT TGTCATTTTC CGTTTTAAAG AAGGTTCTCA AGTATTTTGT 71066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAATCTT TGATACCCTT TGTCATTTTC CGTTTTAAAG AAGGTTCTCA AGTATTTTGT 379 AAAAGATGTT CTTCATTAAT ACTTTGTTGT TGATGGACAG CCAAATTTTT TTTTTTATCT 71006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGATGTT CTTCATTAAT ACTTTGTTGT TGATGGACAG CCAAATTTTT TTTTTTATCT 439 ATAGCGTACT ATTAAGATTT ACATGGGCAA TGTTGCACTT TGCCCTGGTG TTGTATACGT 70946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCGTACT ATTAAGATTT ACATGGGCAA TGTTGCACTT TGCCCTGGTG TTGTATACGT 499 GCTTTCATGC ATAAGTTATT TAGTAGGATT GAGGAAACCA TAAGTGCATG AAGATGTCAT 70886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTCATGC ATAAGTTATT TAGTAGGATT GAGGAAACCA TAAGTGCATG AAGATGTCAT 559 AAAAGAAAAT CTTATAATTT CCTGCATTTG GCGCAAGGTG TTATCTGGGC CCTAATTTA 70827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAAAGAAAAT CTTATAATTT CCTGCATTTG GCGCAAGGTG TTATCTGGGC CCTAATTTA 618 hqPGS_C08HBa0064M21.1-_SGN-E311216+ (73465 73350,71328 70827) ******************************************************************************** EST sequence 102 +strand 563 n (File: SGN-E268912+) 1 TGAAAGGGGA TATGGATTCT TTTTCGTCGC CGCCGCCGCA TAGTGGAGCA TCCTCCCAAT 61 TCTCGACTAA TGACATAATG GACCAGGTCA AAACTCAGCT TGAACAGGCA TACGCCGAGC 121 AATTTCTCGA GACGGTGAGG GACAAATGCT TTGACAAGTG TATCACCAAA CCAGGGAGCA 181 GTCTAAGTGG AAGTGAAGGT AGTTGCATCT CAAGGTGTGT TGATCGGTAT ATCGAGGCCA 241 CTGGTATAAT TAGCAAAGCT CTCTTCAGTC AACGCTGAAA CTGTAGTTGG GTAGATCTCA 301 AAGCTTGCTT GCTCAGTAAA TGCTGGAATG CATTAATTAA TCTTTGATAC CCTTTGTCAT 361 TTTCCGTTTT AAAGAAGGTT CTCAAGTATT TTGTAAAAGA TGTTCTTCAT TAATACTTTG 421 TTGTTGATGG ACAGCCAAAT TTTTTTTTTT ATCTATAGCG TACTATTAAG ATTTACATGG 481 GCAATGTTGC ACTTTGCCCT GGTGTTGTAT ACGTGCTTTC ATGCCTNNNN NAAAAAAAAA 541 AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 74080 to 69936): Exon 1 73480 73350 ( 131 n); cDNA 1 131 ( 131 n); score: 1.000 Intron 1 73349 71329 (2021 n); Pd: 0.999 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 71328 70936 ( 393 n); cDNA 132 524 ( 393 n); score: 0.997 PPA cDNA 532 563 MATCH C08HBa0064M21.1- SGN-E268912+ 0.998 524 0.931 C PGS_C08HBa0064M21.1-_SGN-E268912+ (73480 73350,71328 70936) Alignment (genomic DNA sequence = upper lines): TGAAAGGGGA TATGGATTCT TTTTCGTCGC CGCCGCCGCA TAGTGGAGCA TCCTCCCAAT 73421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGGGGA TATGGATTCT TTTTCGTCGC CGCCGCCGCA TAGTGGAGCA TCCTCCCAAT 60 TCTCGACTAA TGACATAATG GACCAGGTCA AAACTCAGCT TGAACAGGCA TACGCCGAGC 73361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGACTAA TGACATAATG GACCAGGTCA AAACTCAGCT TGAACAGGCA TACGCCGAGC 120 AATTTCTCGA GGTTTGATCT GATATCTATT TTCATCTCCT TTTCTCTGTC ATCGTTAATT 73301 |||||||||| | AATTTCTCGA G......... .......... .......... .......... .......... 131 TTTTTTTCAA AACTGTGATG CCGCAGTCTG TCACCTGTTT TTGAGTAATT AGTTGCTGGG 73241 .......... .......... .......... .......... .......... .......... 131 TAATTACTGA TCTGCGCTAT GATGTATGAG AGGTTATGTC CGAAAAAAAG GTGCTAGCAA 73181 .......... .......... .......... .......... .......... .......... 131 AACAATATAT TTTTGGTATT TAAGCCTTTG TACTTGCTAT AAGTTTTAAT TATTCCTTGG 73121 .......... .......... .......... .......... .......... .......... 131 CATTTGGCCT TAGGAGCATC CAACACCTTT AATTAATTTT TTTTAGAGTT TGATTGTATG 73061 .......... .......... .......... .......... .......... .......... 131 CTTTCCACGT ACGAAATTGT CTGCTTATGT CAAATTATTC ATGAATAATT ATATATATTT 73001 .......... .......... .......... .......... .......... .......... 131 CCATATTTTT TTCTAATAAC AATTTCCAGT TACCATTTAG GGATGTTGTG TAATTTTTAT 72941 .......... .......... .......... .......... .......... .......... 131 CCTAAATCTT AGGTTGACTG AAATCTGCAT TACAATCTGT CTGTCCTAGT ATTCCAAAAT 72881 .......... .......... .......... .......... .......... .......... 131 ATTTAACTTT GGTCCGTTTG AACTTTTCTC CCTTTAATAA TTAACTGTAA ATATGGATTG 72821 .......... .......... .......... .......... .......... .......... 131 CTACTACTTT ATAGTTTATA CCTAGTCAAA CTTATTTGGA GTCAGCTAAA TGAAATTGTT 72761 .......... .......... .......... .......... .......... .......... 131 GTTTTTATTT GGCTCATTTC CTTTCATTTC AAGGAGGTTC TCTAGACCAA AAAGTTCTCT 72701 .......... .......... .......... .......... .......... .......... 131 ATATCTCTCA CTCTTTCACG AGTACCTTGT ACCTCTCACC AACACATGAA CTGGTGACTT 72641 .......... .......... .......... .......... .......... .......... 131 TGTCTACCAA GGTTATGTCA GATGATGAGA AATTACCTAG CTTAATTTGT TTCTTCTGGG 72581 .......... .......... .......... .......... .......... .......... 131 ATTTGAACCT AAGATCTCAT GGTTCTCCCC CTCCCCACTT AATTGATCAC TAAGTTAGTA 72521 .......... .......... .......... .......... .......... .......... 131 GACACTTGTC TTTTTTTCTT TTTAGTTTGC TTGGTTAATT CAGTATTCAT TTTGCAGAAA 72461 .......... .......... .......... .......... .......... .......... 131 TTGTAGATTC TTTAGACCAA CTTGTTGGGA TTGAGGAATA GTAGGATTAT ACAAAATGCA 72401 .......... .......... .......... .......... .......... .......... 131 ATGGCTCACC CATCTTAGAA TTAATTTGCA CACTTGTTCA ATTAATCAAT TGTTCCATTA 72341 .......... .......... .......... .......... .......... .......... 131 ATAAATCCTA TCTTTTAACC AACTGTTTGC ACCTGACAAT AGATTTAATT GTTAGGAGAG 72281 .......... .......... .......... .......... .......... .......... 131 TGGAAATCTA CAGTGGTTTG ACTTCCCCAG ATCCACTTCC CTTTTTGATG AGGAAAATAT 72221 .......... .......... .......... .......... .......... .......... 131 AATGTGTTGA GGGTAACAAT ACAATTGTCC TTCTTAGTAA CTGCACAAGT TGGGTAGTGT 72161 .......... .......... .......... .......... .......... .......... 131 AGATATTTTG GGACTGAGGA ACTATGTTAG CATCGTCTTG TCTTTAAATA CTTGAGCTAA 72101 .......... .......... .......... .......... .......... .......... 131 TATATAATTA TGACTATTGA TTGATGTAAC TGGCATTTGG TAGTTTCAAA TTTTGGTCAT 72041 .......... .......... .......... .......... .......... .......... 131 CCATGACATC TTTTAAAATA TCTCATCCTA GCATATTTCT CAACAACACA TAAAAAGTAA 71981 .......... .......... .......... .......... .......... .......... 131 AATACAAATA AGAGTTATGG CGTTCAATCT TATAATACGA GAAACTTAAG CCATGTGTAG 71921 .......... .......... .......... .......... .......... .......... 131 CCTTTCGAGG TTCCTTCATT ATTTCAGCAG GGGAAGAATA GCTTCTCAAG CAATTATTGA 71861 .......... .......... .......... .......... .......... .......... 131 CACCATGAGA GATTACCTAT TAGTATTTTT CCTTATGAGA ATCTGAAGTG GCCAGTCAAT 71801 .......... .......... .......... .......... .......... .......... 131 TCATTTACCA TACTCTTACT GTGTTGTACT CTCTAATCTC ATATTTCTTT GATATTCCGA 71741 .......... .......... .......... .......... .......... .......... 131 TTTCACAATC AAGTCATTTG GTTTGCTAAC TGTTATTTAT TCGGTGACTG CGTTAAACTG 71681 .......... .......... .......... .......... .......... .......... 131 TAGATGACAC TTGAATAACT GACATTATAG TTTGGTTTCA AGTTACTACT TGGAACTTTG 71621 .......... .......... .......... .......... .......... .......... 131 CCTGCAACCT TTATTTTAAA GGTTTGCTTG TGTTCTTGAT GTGGATACTT TTCTGCTCCA 71561 .......... .......... .......... .......... .......... .......... 131 GTGATAGATC TGCATTTTTC AATCATGGGT TCTTCAAATT GGAATCACTT AACAATGGTA 71501 .......... .......... .......... .......... .......... .......... 131 CCTTGATTAT GTGAATGCAT CATACATAAT TTTTTATGGA CTGAACATCT TCTGGAGAAG 71441 .......... .......... .......... .......... .......... .......... 131 TAGATTGAGT TACTGTCATT GTATAAATAA GATTCTGCAA CTTGTGATGT ATGTAAGTTC 71381 .......... .......... .......... .......... .......... .......... 131 AGCATGTTGC AGAAGATATA ATAGTAAGTT ACTAACCCTT CAATTATCTC AGACGGTGAG 71321 |||||||| .......... .......... .......... .......... .......... ..ACGGTGAG 139 GGACAAATGC TTTGACAAGT GTATCACCAA ACCAGGGAGC AGTCTAAGTG GAAGTGAAGG 71261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAAATGC TTTGACAAGT GTATCACCAA ACCAGGGAGC AGTCTAAGTG GAAGTGAAGG 199 TAGTTGCATC TCAAGGTGTG TTGATCGGTA TATCGAGGCC ACTGGTATAA TTAGCAAAGC 71201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTGCATC TCAAGGTGTG TTGATCGGTA TATCGAGGCC ACTGGTATAA TTAGCAAAGC 259 TCTCTTCAGT CAACGCTGAA ACTGTAGTTG GGTAGATCTC AAGGCTTGCT TGCTCAGTAA 71141 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TCTCTTCAGT CAACGCTGAA ACTGTAGTTG GGTAGATCTC AAAGCTTGCT TGCTCAGTAA 319 ATGCTGGAAT GCATTAATTA ATCTTTGATA CCCTTTGTCA TTTTCCGTTT TAAAGAAGGT 71081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGGAAT GCATTAATTA ATCTTTGATA CCCTTTGTCA TTTTCCGTTT TAAAGAAGGT 379 TCTCAAGTAT TTTGTAAAAG ATGTTCTTCA TTAATACTTT GTTGTTGATG GACAGCCAAA 71021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAAGTAT TTTGTAAAAG ATGTTCTTCA TTAATACTTT GTTGTTGATG GACAGCCAAA 439 TTTTTTTTTT TATCTATAGC GTACTATTAA GATTTACATG GGCAATGTTG CACTTTGCCC 70961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TATCTATAGC GTACTATTAA GATTTACATG GGCAATGTTG CACTTTGCCC 499 TGGTGTTGTA TACGTGCTTT CATGC 70936 |||||||||| |||||||||| ||||| TGGTGTTGTA TACGTGCTTT CATGC 524 hqPGS_C08HBa0064M21.1-_SGN-E268912+ (73480 73350,71328 70936) ******************************************************************************** EST sequence 43 -strand 414 n (File: SGN-E226602-) 1 GCATAGTGAA GCATCCTCCC AATTCTCGAC TAATGACATA ATGGACCAGG TCAAAACTCA 61 GCTTGAACAG GCATACGCCG AGCAATTTCT CGAGACGGTG AGGGACAAAT GCTTTGACAA 121 GTGTATCACC AAACCAGGGA GCAGTCTAAG TGAAAGTGAA GGTAGTTGCA TCTCAAGGTG 181 TGTTGATCGG TATATCGAGG CCACTGGTAT AATTAGCAAA GCTCTCTTCA GTCAACGCTG 241 AAACTGTAGT TGGGTAGATC TCAAGGCTTG CTTGCTCAGT AAATGCTGGA ATGCATTAAT 301 TAATCTTTGA TACCCTTTGT CATTTTCCGT TTTAAAGAAG GTTCTCAAGT ATTTTGTAAA 361 AGATGTTCTT CATTAATACT TTGTTGTTGA TGAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 74134 to 70211): Exon 1 73443 73350 ( 94 n); cDNA 1 94 ( 94 n); score: 0.989 Intron 1 73349 71329 (2021 n); Pd: 0.999 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 71328 71031 ( 298 n); cDNA 95 392 ( 298 n); score: 0.997 PPA cDNA 393 414 MATCH C08HBa0064M21.1- SGN-E226602- 0.995 392 0.947 C PGS_C08HBa0064M21.1-_SGN-E226602- (73443 73350,71328 71031) Alignment (genomic DNA sequence = upper lines): GCATAGTGGA GCATCCTCCC AATTCTCGAC TAATGACATA ATGGACCAGG TCAAAACTCA 73384 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATAGTGAA GCATCCTCCC AATTCTCGAC TAATGACATA ATGGACCAGG TCAAAACTCA 60 GCTTGAACAG GCATACGCCG AGCAATTTCT CGAGGTTTGA TCTGATATCT ATTTTCATCT 73324 |||||||||| |||||||||| |||||||||| |||| GCTTGAACAG GCATACGCCG AGCAATTTCT CGAG...... .......... .......... 94 CCTTTTCTCT GTCATCGTTA ATTTTTTTTT CAAAACTGTG ATGCCGCAGT CTGTCACCTG 73264 .......... .......... .......... .......... .......... .......... 94 TTTTTGAGTA ATTAGTTGCT GGGTAATTAC TGATCTGCGC TATGATGTAT GAGAGGTTAT 73204 .......... .......... .......... .......... .......... .......... 94 GTCCGAAAAA AAGGTGCTAG CAAAACAATA TATTTTTGGT ATTTAAGCCT TTGTACTTGC 73144 .......... .......... .......... .......... .......... .......... 94 TATAAGTTTT AATTATTCCT TGGCATTTGG CCTTAGGAGC ATCCAACACC TTTAATTAAT 73084 .......... .......... .......... .......... .......... .......... 94 TTTTTTTAGA GTTTGATTGT ATGCTTTCCA CGTACGAAAT TGTCTGCTTA TGTCAAATTA 73024 .......... .......... .......... .......... .......... .......... 94 TTCATGAATA ATTATATATA TTTCCATATT TTTTTCTAAT AACAATTTCC AGTTACCATT 72964 .......... .......... .......... .......... .......... .......... 94 TAGGGATGTT GTGTAATTTT TATCCTAAAT CTTAGGTTGA CTGAAATCTG CATTACAATC 72904 .......... .......... .......... .......... .......... .......... 94 TGTCTGTCCT AGTATTCCAA AATATTTAAC TTTGGTCCGT TTGAACTTTT CTCCCTTTAA 72844 .......... .......... .......... .......... .......... .......... 94 TAATTAACTG TAAATATGGA TTGCTACTAC TTTATAGTTT ATACCTAGTC AAACTTATTT 72784 .......... .......... .......... .......... .......... .......... 94 GGAGTCAGCT AAATGAAATT GTTGTTTTTA TTTGGCTCAT TTCCTTTCAT TTCAAGGAGG 72724 .......... .......... .......... .......... .......... .......... 94 TTCTCTAGAC CAAAAAGTTC TCTATATCTC TCACTCTTTC ACGAGTACCT TGTACCTCTC 72664 .......... .......... .......... .......... .......... .......... 94 ACCAACACAT GAACTGGTGA CTTTGTCTAC CAAGGTTATG TCAGATGATG AGAAATTACC 72604 .......... .......... .......... .......... .......... .......... 94 TAGCTTAATT TGTTTCTTCT GGGATTTGAA CCTAAGATCT CATGGTTCTC CCCCTCCCCA 72544 .......... .......... .......... .......... .......... .......... 94 CTTAATTGAT CACTAAGTTA GTAGACACTT GTCTTTTTTT CTTTTTAGTT TGCTTGGTTA 72484 .......... .......... .......... .......... .......... .......... 94 ATTCAGTATT CATTTTGCAG AAATTGTAGA TTCTTTAGAC CAACTTGTTG GGATTGAGGA 72424 .......... .......... .......... .......... .......... .......... 94 ATAGTAGGAT TATACAAAAT GCAATGGCTC ACCCATCTTA GAATTAATTT GCACACTTGT 72364 .......... .......... .......... .......... .......... .......... 94 TCAATTAATC AATTGTTCCA TTAATAAATC CTATCTTTTA ACCAACTGTT TGCACCTGAC 72304 .......... .......... .......... .......... .......... .......... 94 AATAGATTTA ATTGTTAGGA GAGTGGAAAT CTACAGTGGT TTGACTTCCC CAGATCCACT 72244 .......... .......... .......... .......... .......... .......... 94 TCCCTTTTTG ATGAGGAAAA TATAATGTGT TGAGGGTAAC AATACAATTG TCCTTCTTAG 72184 .......... .......... .......... .......... .......... .......... 94 TAACTGCACA AGTTGGGTAG TGTAGATATT TTGGGACTGA GGAACTATGT TAGCATCGTC 72124 .......... .......... .......... .......... .......... .......... 94 TTGTCTTTAA ATACTTGAGC TAATATATAA TTATGACTAT TGATTGATGT AACTGGCATT 72064 .......... .......... .......... .......... .......... .......... 94 TGGTAGTTTC AAATTTTGGT CATCCATGAC ATCTTTTAAA ATATCTCATC CTAGCATATT 72004 .......... .......... .......... .......... .......... .......... 94 TCTCAACAAC ACATAAAAAG TAAAATACAA ATAAGAGTTA TGGCGTTCAA TCTTATAATA 71944 .......... .......... .......... .......... .......... .......... 94 CGAGAAACTT AAGCCATGTG TAGCCTTTCG AGGTTCCTTC ATTATTTCAG CAGGGGAAGA 71884 .......... .......... .......... .......... .......... .......... 94 ATAGCTTCTC AAGCAATTAT TGACACCATG AGAGATTACC TATTAGTATT TTTCCTTATG 71824 .......... .......... .......... .......... .......... .......... 94 AGAATCTGAA GTGGCCAGTC AATTCATTTA CCATACTCTT ACTGTGTTGT ACTCTCTAAT 71764 .......... .......... .......... .......... .......... .......... 94 CTCATATTTC TTTGATATTC CGATTTCACA ATCAAGTCAT TTGGTTTGCT AACTGTTATT 71704 .......... .......... .......... .......... .......... .......... 94 TATTCGGTGA CTGCGTTAAA CTGTAGATGA CACTTGAATA ACTGACATTA TAGTTTGGTT 71644 .......... .......... .......... .......... .......... .......... 94 TCAAGTTACT ACTTGGAACT TTGCCTGCAA CCTTTATTTT AAAGGTTTGC TTGTGTTCTT 71584 .......... .......... .......... .......... .......... .......... 94 GATGTGGATA CTTTTCTGCT CCAGTGATAG ATCTGCATTT TTCAATCATG GGTTCTTCAA 71524 .......... .......... .......... .......... .......... .......... 94 ATTGGAATCA CTTAACAATG GTACCTTGAT TATGTGAATG CATCATACAT AATTTTTTAT 71464 .......... .......... .......... .......... .......... .......... 94 GGACTGAACA TCTTCTGGAG AAGTAGATTG AGTTACTGTC ATTGTATAAA TAAGATTCTG 71404 .......... .......... .......... .......... .......... .......... 94 CAACTTGTGA TGTATGTAAG TTCAGCATGT TGCAGAAGAT ATAATAGTAA GTTACTAACC 71344 .......... .......... .......... .......... .......... .......... 94 CTTCAATTAT CTCAGACGGT GAGGGACAAA TGCTTTGACA AGTGTATCAC CAAACCAGGG 71284 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....ACGGT GAGGGACAAA TGCTTTGACA AGTGTATCAC CAAACCAGGG 139 AGCAGTCTAA GTGGAAGTGA AGGTAGTTGC ATCTCAAGGT GTGTTGATCG GTATATCGAG 71224 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTCTAA GTGAAAGTGA AGGTAGTTGC ATCTCAAGGT GTGTTGATCG GTATATCGAG 199 GCCACTGGTA TAATTAGCAA AGCTCTCTTC AGTCAACGCT GAAACTGTAG TTGGGTAGAT 71164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACTGGTA TAATTAGCAA AGCTCTCTTC AGTCAACGCT GAAACTGTAG TTGGGTAGAT 259 CTCAAGGCTT GCTTGCTCAG TAAATGCTGG AATGCATTAA TTAATCTTTG ATACCCTTTG 71104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGGCTT GCTTGCTCAG TAAATGCTGG AATGCATTAA TTAATCTTTG ATACCCTTTG 319 TCATTTTCCG TTTTAAAGAA GGTTCTCAAG TATTTTGTAA AAGATGTTCT TCATTAATAC 71044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTCCG TTTTAAAGAA GGTTCTCAAG TATTTTGTAA AAGATGTTCT TCATTAATAC 379 TTTGTTGTTG ATG 71031 |||||||||| ||| TTTGTTGTTG ATG 392 hqPGS_C08HBa0064M21.1-_SGN-E226602- (73443 73350,71328 71031) ******************************************************************************** EST sequence 42 -strand 204 n (File: SGN-E226941-) 1 ATTAACAAAG CTCTCTTCAG TCAACGCTGA AACTGTAGTT GGGTAGATCT CAAGGCTTGC 61 TTGCTCAGTA AATGCTGGAA TGCATTAATT AATCTTTGAT ACCCTTTGTC ATTTTCCGTT 121 TTAAAGAAGG TTCTCAAGTA TTTTGTAAAA GATGTTCTTC ATTAATACTT TGTTGTTGAT 181 GGACAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 71866 to 70237): Exon 1 71211 71027 ( 185 n); cDNA 1 185 ( 185 n); score: 0.995 PPA cDNA 186 204 MATCH C08HBa0064M21.1- SGN-E226941- 0.995 185 0.907 C PGS_C08HBa0064M21.1-_SGN-E226941- (71211 71027) Alignment (genomic DNA sequence = upper lines): ATTAGCAAAG CTCTCTTCAG TCAACGCTGA AACTGTAGTT GGGTAGATCT CAAGGCTTGC 71152 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAACAAAG CTCTCTTCAG TCAACGCTGA AACTGTAGTT GGGTAGATCT CAAGGCTTGC 60 TTGCTCAGTA AATGCTGGAA TGCATTAATT AATCTTTGAT ACCCTTTGTC ATTTTCCGTT 71092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTCAGTA AATGCTGGAA TGCATTAATT AATCTTTGAT ACCCTTTGTC ATTTTCCGTT 120 TTAAAGAAGG TTCTCAAGTA TTTTGTAAAA GATGTTCTTC ATTAATACTT TGTTGTTGAT 71032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGAAGG TTCTCAAGTA TTTTGTAAAA GATGTTCTTC ATTAATACTT TGTTGTTGAT 180 GGACA 71027 ||||| GGACA 185 hqPGS_C08HBa0064M21.1-_SGN-E226941- (71211 71027) Total number of EST alignments reported: 136 ________________________________________________________________________________ Predicted gene locations (17) in segment 1 to 93492: PGL 1 (+ strand): 1 5764 AGS-1 (1 29,97 188,263 332,411 533,708 800,947 1076,1765 1846,1945 2077,3112 3317,3418 3543,4381 4690,4805 5764) SCR (e 0.966 d 0.000 a 0.997,e 1.000 d 0.999 a 0.863,e 1.000 d 0.880 a 0.910,e 1.000 d 0.949 a 0.992,e 1.000 d 0.956 a 0.851,e 1.000 d 0.755 a 0.985,e 1.000 d 0.961 a 0.971,e 1.000 d 0.986 a 0.956,e 1.000 d 0.945 a 1.000,e 1.000 d 0.542 a 0.998,e 0.991 d 0.970 a 0.956,e 0.998) Exon 1 1 29 ( 29 n); score: 0.966 Intron 1 30 96 ( 67 n); Pd: 0.000 Pa: 0.997 Exon 2 97 188 ( 92 n); score: 1.000 Intron 2 189 262 ( 74 n); Pd: 0.999 Pa: 0.863 Exon 3 263 332 ( 70 n); score: 1.000 Intron 3 333 410 ( 78 n); Pd: 0.880 Pa: 0.910 Exon 4 411 533 ( 123 n); score: 1.000 Intron 4 534 707 ( 174 n); Pd: 0.949 Pa: 0.992 Exon 5 708 800 ( 93 n); score: 1.000 Intron 5 801 946 ( 146 n); Pd: 0.956 Pa: 0.851 Exon 6 947 1076 ( 130 n); score: 1.000 Intron 6 1077 1764 ( 688 n); Pd: 0.755 Pa: 0.985 Exon 7 1765 1846 ( 82 n); score: 1.000 Intron 7 1847 1944 ( 98 n); Pd: 0.961 Pa: 0.971 Exon 8 1945 2077 ( 133 n); score: 1.000 Intron 8 2078 3111 (1034 n); Pd: 0.986 Pa: 0.956 Exon 9 3112 3317 ( 206 n); score: 1.000 Intron 9 3318 3417 ( 100 n); Pd: 0.945 Pa: 1.000 Exon 10 3418 3543 ( 126 n); score: 1.000 Intron 10 3544 4380 ( 837 n); Pd: 0.542 Pa: 0.998 Exon 11 4381 4690 ( 310 n); score: 0.991 Intron 11 4691 4804 ( 114 n); Pd: 0.970 Pa: 0.956 Exon 12 4805 5764 ( 960 n); score: 0.998 PGS (1 29,97 188,263 332,411 533,708 800,947 1002) SGN-E320441+ PGS (1 29,97 188,263 327) SGN-E268716+ PGS (275 332,411 533,708 800,947 1076,1765 1846,1945 2062) SGN-E396727+ PGS (276 332,411 533,708 800,947 1076,1765 1814) SGN-E206957+ PGS (977 1076,1765 1846,1945 2077,3112 3317,3418 3428) SGN-E252913+ PGS (1018 1076,1765 1846,1945 2077,3112 3317,3418 3475) SGN-E264116+ PGS (1018 1076,1765 1846,1945 2077,3112 3314) SGN-E263954+ PGS (3151 3317,3418 3543,4381 4440) SGN-E316184+ PGS (4373 4690,4805 5196) SGN-E578171- PGS (4412 4690,4805 5221) SGN-E345218+ PGS (5156 5764) SGN-E249303+ 3-phase translation of AGS-1 (+strand): . . . : . . . 1 AAGCTTATCCATTTATTCTTGCTCCCAAG : GGTGGTGACACTGAATGGGTAACTCTACATC K L I H L F L L P R : V V T L N G - L Y I S L S I Y S C S Q : G W - H - M G N S T S A Y P F I L A P K : G G D T E W V T L H . . . . . . 128 TTGACAACCCCAACCCATCACATGATGACTGGGTTGGAGTTTTCTCTCCAGCAAAATTCA L T T P T H H M M T G L E F S L Q Q N S - Q P Q P I T - - L G W S F L S S K I Q L D N P N P S H D D W V G V F S P A K F . : . . . . . 188 A : TGGATCTACATGTTATTTGGAAAATGATGGTAAACAACAGCCTCCATATATTTGTACAG : M D L H V I W K M M V N N S L H I F V Q : W I Y M L F G K - W - T T A S I Y L Y S N : G S T C Y L E N D G K Q Q P P Y I C T . . : . . . . 322 CCCCAATAAAG : TATAACTTTGCAAATTTCTCCAATCCGGATTATGCAAAAACGGGAAACA P Q - S : I T L Q I S P I R I M Q K R E T P N K : V - L C K F L Q S G L C K N G K H A P I K : Y N F A N F S N P D Y A K T G N . . . . . . 460 CTTCTCTCAAGTTCCAGTTAATCAATCAGCGGGCAGATTTCTCCTTTGCATTGTTTACAG L L S S S S - S I S G Q I S P L H C L Q F S Q V P V N Q S A G R F L L C I V Y R T S L K F Q L I N Q R A D F S F A L F T . . : . . . . 520 GCGGGTTGTCAAAT : CCAAAGCTGGTAGGTGTTTCAAATTACATATCATTTGCAAATCCTA A G C Q I : Q S W - V F Q I T Y H L Q I L R V V K : S K A G R C F K L H I I C K S - G G L S N : P K L V G V S N Y I S F A N P . . . . . : . 754 AAGCACCACTTTATCCACGGCTTGCTTTGGGGAAATCATGGAATGAA : ATGACATTGACCT K H H F I H G L L W G N H G M K : - H - P S T T L S T A C F G E I M E - : N D I D L K A P L Y P R L A L G K S W N E : M T L T . . . . . . 960 GGACAAGCGGCTATAATTTACTTGAAGCTGTTCCTTTCATTGAATGGGGTCGGAAGGGTG G Q A A I I Y L K L F L S L N G V G R V D K R L - F T - S C S F H - M G S E G - W T S G Y N L L E A V P F I E W G R K G . . . . . . : 1020 ATCCCCAACATCGCTCACCAGCAGGAACATTGACATTTGATAGAAATACAATGTGTG : GTT I P N I A H Q Q E H - H L I E I Q C V : V S P T S L T S R N I D I - - K Y N V W : F D P Q H R S P A G T L T F D R N T M C : G . . . . . . 1768 CACCTGCTCGAACAGTTGGCTGGCGTGATCCAGGGTTCATACATACTAGCTTCATGAAGG H L L E Q L A G V I Q G S Y I L A S - R T C S N S W L A - S R V H T Y - L H E G S P A R T V G W R D P G F I H T S F M K . . : . . . . 1828 ATCTTTGGCCAAGCACCTT : GTACACATACAAGATGGGTCATATGTTGTCAAATGGTTCCT I F G Q A P : C T H T R W V I C C Q M V P S L A K H L : V H I Q D G S Y V V K W F L D L W P S T L : Y T Y K M G H M L S N G S . . . . . . 1986 ACGTTTGGAGTAAGATGTATTCCTTTAGATCATCACCATATCCAGGACAAGACTCATTGC T F G V R C I P L D H H H I Q D K T H C R L E - D V F L - I I T I S R T R L I A Y V W S K M Y S F R S S P Y P G Q D S L . . . . : . . 2046 AGCGTGTTATAATTTTTGGAGACATGGGAAAG : GCTGAGCGGGATGGTTCAAATGAGTATA S V L - F L E T W E R : L S G M V Q M S I A C Y N F W R H G K : G - A G W F K - V - Q R V I I F G D M G K : A E R D G S N E Y . . . . . . 3140 GTAATTATCAGCCAGGCTCACTGAATACAACGGACCAACTCATCAATGACCTTAAAAACA V I I S Q A H - I Q R T N S S M T L K T - L S A R L T E Y N G P T H Q - P - K H S N Y Q P G S L N T T D Q L I N D L K N . . . . . . 3200 TTGATATAGTTTTCCATATAGGAGACATTACCTATGCCAATGGATACATATCACAGTGGG L I - F S I - E T L P M P M D T Y H S G - Y S F P Y R R H Y L C Q W I H I T V G I D I V F H I G D I T Y A N G Y I S Q W . . . . . . : 3260 ACCAATTTACTGCACAAGTGGAACCTGTTGCATCAACAGTACCCTATATGATTGCAAG : TG T N L L H K W N L L H Q Q Y P I - L Q : V P I Y C T S G T C C I N S T L Y D C K : W D Q F T A Q V E P V A S T V P Y M I A S : . . . . . . 3420 GTAATCATGAGCGTGATTGGCCTGGAACTGGTTCCTTCTATGATGTTATGGACTCTGGTG V I M S V I G L E L V P S M M L W T L V - S - A - L A W N W F L L - C Y G L W W G N H E R D W P G T G S F Y D V M D S G . . . . . . 3480 GAGAATGTGGAGTGCTAGCTCAGACCATGTTTTATGTTCCTGCTGATAATAGAGCTAACT E N V E C - L R P C F M F L L I I E L T R M W S A S S D H V L C S C - - - S - L G E C G V L A Q T M F Y V P A D N R A N . : . . . . . 3540 TTTG : GTATTCCACAGATTATGGCATGTTTCACTTCTGCATAGCAGACAGTGAGCATGATT F : G I P Q I M A C F T S A - Q T V S M I L : V F H R L W H V S L L H S R Q - A - L F W : Y S T D Y G M F H F C I A D S E H D . . . . . . 4437 GGAGAGAGGGGTCTGAGCAATACAGATTTATTGAACATTGTCTTGCATCAGTAGACAGAC G E R G L S N T D L L N I V L H Q - T D E R G V - A I Q I Y - T L S C I S R Q T W R E G S E Q Y R F I E H C L A S V D R . . . . . . 4497 AGAAGCAGCCTTGGCTGATATTTGCTGCTCATCGGGTTCTTGGTTACTCTTCAGACAAAT R S S L G - Y L L L I G F L V T L Q T N E A A L A D I C C S S G S W L L F R Q M Q K Q P W L I F A A H R V L G Y S S D K . . . . . . 4557 GGTATGGCTTAGAAGGCTCATTTGAGGAGCCCATGGGAAGGGAAAGCTTGCAGAAGCTTT G M A - K A H L R S P W E G K A C R S F V W L R R L I - G A H G K G K L A E A L W Y G L E G S F E E P M G R E S L Q K L . . . . . . 4617 GGCAGAAGTATAAAGTGGATATTGCATTTTATGGTCATGTCCATAACTATGAAAGAACTT G R S I K W I L H F M V M S I T M K E L A E V - S G Y C I L W S C P - L - K N L W Q K Y K V D I A F Y G H V H N Y E R T . . : . . . . 4677 GTCCCATTTATCAG : AACCAATGTGTTAACTCGGAAAGATCACACTATTCTGGTATTGTTA V P F I R : T N V L T R K D H T I L V L L S H L S : E P M C - L G K I T L F W Y C - C P I Y Q : N Q C V N S E R S H Y S G I V . . . . . . 4851 ATGGAACAATCCATGTTGTTGTGGGTGGCGGAGGAAGCCACTTATCAGAGTTCACCCCAA M E Q S M L L W V A E E A T Y Q S S P Q W N N P C C C G W R R K P L I R V H P N N G T I H V V V G G G G S H L S E F T P . . . . . . 4911 TTAATACCACTTGGAGTCTTCACAGGGATTACGATTGGGGATTTGTCAAGCTTACAGCAT L I P L G V F T G I T I G D L S S L Q H - Y H L E S S Q G L R L G I C Q A Y S I I N T T W S L H R D Y D W G F V K L T A . . . . . . 4971 TTAATCATTCATCACTACTTTTTGAATACAAAAAGAGTAGGGACGGCAAAGTTTATGATT L I I H H Y F L N T K R V G T A K F M I - S F I T T F - I Q K E - G R Q S L - F F N H S S L L F E Y K K S R D G K V Y D . . . . . . 5031 CTTTCACCATCTCAAGAGACTATAAAGACGTCTTAGCTTGTGTTCACGATGGTTGTGAGC L S P S Q E T I K T S - L V F T M V V S F H H L K R L - R R L S L C S R W L - A S F T I S R D Y K D V L A C V H D G C E . . . . . . 5091 CAACCACTTTTGCATCTTAAATCAAACTGTACATGTATACTAGGGAAAAGAATTCAGCTA Q P L L H L K S N C T C I L G K R I Q L N H F C I L N Q T V H V Y - G K E F S Y P T T F A S - I K L Y M Y T R E K N S A . . . . . . 5151 CAGAATTTGTTGAAATTGGTTCCAATACAATACAAGAAGCCATAATGTACATTTTCTTTG Q N L L K L V P I Q Y K K P - C T F S L R I C - N W F Q Y N T R S H N V H F L W T E F V E I G S N T I Q E A I M Y I F F . . . . . . 5211 GTTTTAGCAAATCTATTTTCACTCATGACTGAATACAGTTTTCGAGCTCTCATGTGATGC V L A N L F S L M T E Y S F R A L M - C F - Q I Y F H S - L N T V F E L S C D A G F S K S I F T H D - I Q F S S S H V M . . . . . . 5271 TCTAAAATCTATCCCAAAATCAGAAATTAGACGCAGCTATCTCACCTGGGACTGATAATC S K I Y P K I R N - T Q L S H L G L I I L K S I P K S E I R R S Y L T W D - - S L - N L S Q N Q K L D A A I S P G T D N . . . . . . 5331 TCCTTCTCAGGGAAAAAATTGGAAAAAGAATTGGAGCAGTTCACAAAGAAACAATAGCAA S F S G K K L E K E L E Q F T K K Q - Q P S Q G K N W K K N W S S S Q R N N S K L L L R E K I G K R I G A V H K E T I A . . . . . . 5391 ATTCCGAAAAATTCTGTAGCAGACTAATTATGCAAAGAATAAACAGGAAAGCCATGTGCA I P K N S V A D - L C K E - T G K P C A F R K I L - Q T N Y A K N K Q E S H V H N S E K F C S R L I M Q R I N R K A M C . . . . . . 5451 TTTCTTTTTTATCCACTGATGTTACCTTCAACACTGCCTTAATATAATTTCAGCCCTGTT F L F Y P L M L P S T L P - Y N F S P V F F F I H - C Y L Q H C L N I I S A L F I S F L S T D V T F N T A L I - F Q P C . . . . . . 5511 TGAACAATATTACGTCAATGATGAATTGTTGGACACCGGAGCAAAAGTTAAGCTGTGGGC - T I L R Q - - I V G H R S K S - A V G E Q Y Y V N D E L L D T G A K V K L W A L N N I T S M M N C W T P E Q K L S C G . . . . . . 5571 CTGCATTCAGAAGCTAAGGATTTTCAGAGCCCGTTAATCTTCTTCATGTAAAAGTTTAGT L H S E A K D F Q S P L I F F M - K F S C I Q K L R I F R A R - S S S C K S L V P A F R S - G F S E P V N L L H V K V - . . . . . . 5631 GTGCCCAAATTATGAATAAAGGGTAGACAAGATGAGGAGAAAAGCAGTGAAAGCCCCTTG V P K L - I K G R Q D E E K S S E S P L C P N Y E - R V D K M R R K A V K A P C C A Q I M N K G - T R - G E K Q - K P L . . . . . . 5691 TTGGATGAAGTCAAAACACTGTATTCTTTCGCACCATTATCCTCATCTTACATGACACAA L D E V K T L Y S F A P L S S S Y M T Q W M K S K H C I L S H H Y P H L T - H K V G - S Q N T V F F R T I I L I L H D T . . 5751 AAATGTTACTTTCA K C Y F N V T F K M L L S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-1_AGS-1_PPS_1 (3 29,97 188,263 332,411 533,708 800,947 1076,1765 1846,1945 2077,3112 3317,3418 3543,4381 4690,4805 5110) (frame '0'; 1695 bp, 565 residues) 1 AYPFILAPKG GDTEWVTLHL DNPNPSHDDW VGVFSPAKFN GSTCYLENDG KQQPPYICTA 61 PIKYNFANFS NPDYAKTGNT SLKFQLINQR ADFSFALFTG GLSNPKLVGV SNYISFANPK 121 APLYPRLALG KSWNEMTLTW TSGYNLLEAV PFIEWGRKGD PQHRSPAGTL TFDRNTMCGS 181 PARTVGWRDP GFIHTSFMKD LWPSTLYTYK MGHMLSNGSY VWSKMYSFRS SPYPGQDSLQ 241 RVIIFGDMGK AERDGSNEYS NYQPGSLNTT DQLINDLKNI DIVFHIGDIT YANGYISQWD 301 QFTAQVEPVA STVPYMIASG NHERDWPGTG SFYDVMDSGG ECGVLAQTMF YVPADNRANF 361 WYSTDYGMFH FCIADSEHDW REGSEQYRFI EHCLASVDRQ KQPWLIFAAH RVLGYSSDKW 421 YGLEGSFEEP MGRESLQKLW QKYKVDIAFY GHVHNYERTC PIYQNQCVNS ERSHYSGIVN 481 GTIHVVVGGG GSHLSEFTPI NTTWSLHRDY DWGFVKLTAF NHSSLLFEYK KSRDGKVYDS 541 FTISRDYKDV LACVHDGCEP TTFAS- >C08HBa0064M21.1+_PGL-1_AGS-1_PPS_2 (5276 5497) (frame '0'; 219 bp, 73 residues) 1 NLSQNQKLDA AISPGTDNLL LREKIGKRIG AVHKETIANS EKFCSRLIMQ RINRKAMCIS 61 FLSTDVTFNT ALI- AGS-2 (1 332,411 533,708 800,947 970) SCR (e 1.000 d 0.880 a 0.910,e 0.992 d 0.949 a 0.992,e 0.989 d 0.956 a 0.851,e 1.000) Exon 1 1 332 ( 332 n); score: 1.000 Intron 1 333 410 ( 78 n); Pd: 0.880 Pa: 0.910 Exon 2 411 533 ( 123 n); score: 0.992 Intron 2 534 707 ( 174 n); Pd: 0.949 Pa: 0.992 Exon 3 708 800 ( 93 n); score: 0.989 Intron 3 801 946 ( 146 n); Pd: 0.956 Pa: 0.851 Exon 4 947 970 ( 24 n); score: 1.000 PGS (1 332,411 533,708 800,947 970) SGN-E340270+ 3-phase translation of AGS-2 (+strand): . . . . . . 1 AAGCTTATCCATTTATTCTTGCTCCCAAGGTACTTGAATCCTTCTTGGCCTTTTTATTGA K L I H L F L L P R Y L N P S W P F Y - S L S I Y S C S Q G T - I L L G L F I E A Y P F I L A P K V L E S F L A F L L . . . . . . 61 AGCAATATCTTTAATTCACATGACATGACATGACAGGGTGGTGACACTGAATGGGTAACT S N I F N S H D M T - Q G G D T E W V T A I S L I H M T - H D R V V T L N G - L K Q Y L - F T - H D M T G W - H - M G N . . . . . . 121 CTACATCTTGACAACCCCAACCCATCACATGATGACTGGGTTGGAGTTTTCTCTCCAGCA L H L D N P N P S H D D W V G V F S P A Y I L T T P T H H M M T G L E F S L Q Q S T S - Q P Q P I T - - L G W S F L S S . . . . . . 181 AAATTCAAGTATGTACTAATCTCTACTTCCTCGTTGTTGAATAAATTTGGAATGTTTATT K F K Y V L I S T S S L L N K F G M F I N S S M Y - S L L P R C - I N L E C L F K I Q V C T N L Y F L V V E - I W N V Y . . . . . . 241 TTGTACTCCTTTTGCATCTCAGTGGATCTACATGTTATTTGGAAAATGATGGTAAACAAC L Y S F C I S V D L H V I W K M M V N N C T P F A S Q W I Y M L F G K - W - T T F V L L L H L S G S T C Y L E N D G K Q . . . . : . . 301 AGCCTCCATATATTTGTACAGCCCCAATAAAG : TATAACTTTGCAAATTTCTCCAATCCGG S L H I F V Q P Q - S : I T L Q I S P I R A S I Y L Y S P N K : V - L C K F L Q S G Q P P Y I C T A P I K : Y N F A N F S N P . . . . . . 439 ATTATGCAAAAACGGGAAACACTTCTCTCAAGTTCCAGTTAATCAATCAGCGGGCAGATT I M Q K R E T L L S S S S - S I S G Q I L C K N G K H F S Q V P V N Q S A G R F D Y A K T G N T S L K F Q L I N Q R A D . . . . : . . 499 TCTCCTTTGCATTGTTTACAGGCGGGTTGTCAAAT : CCAAAGCTGGTAGGTGTTTCAAATT S P L H C L Q A G C Q I : Q S W - V F Q I L L C I V Y R R V V K : S K A G R C F K L F S F A L F T G G L S N : P K L V G V S N . . . . . . 733 ACATATCATTTGCAAATCCTAAAGCACCACTTTATCCACGGCTTGCTTTGGGGAAATCAT T Y H L Q I L K H H F I H G L L W G N H H I I C K S - S T T L S T A C F G E I M Y I S F A N P K A P L Y P R L A L G K S . : . . . 793 GGAATGAA : ATGACATTGACCTGGACAAGCGGC G M K : - H - P G Q A E - : N D I D L D K R W N E : M T L T W T S G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-1_AGS-2_PPS_1 (225 332,411 533,708 800,947 970) (frame '0'; 348 bp, 116 residues) 1 IWNVYFVLLL HLSGSTCYLE NDGKQQPPYI CTAPIKYNFA NFSNPDYAKT GNTSLKFQLI 61 NQRADFSFAL FTGGLSNPKL VGVSNYISFA NPKAPLYPRL ALGKSWNEMT LTWTSG PGL 2 (- strand): 10257 9166 AGS-1 (10257 9862,9457 9274,9191 9166) SCR (e 1.000 d 0.996 a 0.897,e 1.000 d 0.992 a 0.991,e 1.000) Exon 1 10257 9862 ( 396 n); score: 1.000 Intron 1 9861 9458 ( 404 n); Pd: 0.996 Pa: 0.897 Exon 2 9457 9274 ( 184 n); score: 1.000 Intron 2 9273 9192 ( 82 n); Pd: 0.992 Pa: 0.991 Exon 3 9191 9166 ( 26 n); score: 1.000 PGS (10257 9862,9457 9274,9191 9166) SGN-E325378+ 3-phase translation of AGS-1 (-strand): . . . . . . 10257 TTTAGCGTCATACAGGATGAGTTCACACGACATACGCCGTCCATTTAAACGCCCGGCGAT F S V I Q D E F T R H T P S I - T P G D L A S Y R M S S H D I R R P F K R P A I - R H T G - V H T T Y A V H L N A R R . . . . . . 10197 CTCCGACCAACAAAGACGACGAGAACTTTCATTGCTCCGCCAGTCCCAAAACCGCCACGA L R P T K T T R T F I A P P V P K P P R S D Q Q R R R E L S L L R Q S Q N R H D S P T N K D D E N F H C S A S P K T A T . . . . . . 10137 CGCTCAGCTACAAGCCCGTCGTTTAGCTTCCACTGTCCTCTCTCTTCAATCTGACTACAA R S A T S P S F S F H C P L S S I - L Q A Q L Q A R R L A S T V L S L Q S D Y N T L S Y K P V V - L P L S S L F N L T T . . . . . . 10077 CTCCTCTTCCCAAGAACAGCAGGTCGACTTAGAAGTTACAGACGAACTTGAATCCTGTCC L L F P R T A G R L R S Y R R T - I L S S S S Q E Q Q V D L E V T D E L E S C P T P L P K N S R S T - K L Q T N L N P V . . . . . . 10017 CGAAGAAGTCGAAGACGATTATGGACATCATAAGGACGCACATGATCTTCGTCAAGCTAC R R S R R R L W T S - G R T - S S S S Y E E V E D D Y G H H K D A H D L R Q A T P K K S K T I M D I I R T H M I F V K L . . . . . . 9957 CAAGCTGAGAGGACCTGACGCTCGGTTATGGTTTGCCAAGCAGCTTATGCTTCCTGAGTG Q A E R T - R S V M V C Q A A Y A S - V K L R G P D A R L W F A K Q L M L P E W P S - E D L T L G Y G L P S S L C F L S . . . . : . . 9897 GATGATTGATGTTCCCGATAAATTGAATACCGATTG : GTATGTATTTGCTAGGCCTGCTGG D D - C S R - I E Y R L : V C I C - A C W M I D V P D K L N T D W : Y V F A R P A G G - L M F P I N - I P I : G M Y L L G L L . . . . . . 9433 AAAACGATGTTTCGTTGTTTCTTCAAATGGAACAACAATCAGTAGACTGCGCAATGGAGT K T M F R C F F K W N N N Q - T A Q W S K R C F V V S S N G T T I S R L R N G V E N D V S L F L Q M E Q Q S V D C A M E . . . . . . 9373 TCTCTTGCACCGTTTTCCTTCTGCTCTACCCAATGGTGCCAGGACTAATAACAGTAAAGC S L A P F S F C S T Q W C Q D - - Q - S L L H R F P S A L P N G A R T N N S K A F S C T V F L L L Y P M V P G L I T V K . . . . : . . 9313 TGCTCAATCATACTGTATTCTTGATTGCATATTTCACGAG : TCTGATGAGACTTATTATGT C S I I L Y S - L H I S R : V - - D L L C A Q S Y C I L D C I F H E : S D E T Y Y V L L N H T V F L I A Y F T S : L M R L I M . 9171 CATTGA H - I S L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-2_AGS-1_PPS_1 (10256 9862,9457 9274,9191 9168) (frame '2'; 603 bp, 201 residues) 1 LASYRMSSHD IRRPFKRPAI SDQQRRRELS LLRQSQNRHD AQLQARRLAS TVLSLQSDYN 61 SSSQEQQVDL EVTDELESCP EEVEDDYGHH KDAHDLRQAT KLRGPDARLW FAKQLMLPEW 121 MIDVPDKLNT DWYVFARPAG KRCFVVSSNG TTISRLRNGV LLHRFPSALP NGARTNNSKA 181 AQSYCILDCI FHESDETYYV I PGL 3 (+ strand): 20231 22520 AGS-1 (20231 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) SCR (e 1.000 d 1.000 a 1.000,e 1.000 d 0.814 a 0.995,e 1.000 d 0.997 a 0.986,e 1.000 d 1.000 a 0.349,e 1.000 d 0.976 a 0.999,e 1.000 d 0.997 a 0.953,e 1.000 d 0.956 a 0.998,e 1.000 d 1.000 a 0.967,e 1.000 d 0.998 a 0.999,e 1.000) Exon 1 20231 20298 ( 68 n); score: 1.000 Intron 1 20299 20369 ( 71 n); Pd: 1.000 Pa: 1.000 Exon 2 20370 20506 ( 137 n); score: 1.000 Intron 2 20507 20594 ( 88 n); Pd: 0.814 Pa: 0.995 Exon 3 20595 20644 ( 50 n); score: 1.000 Intron 3 20645 20725 ( 81 n); Pd: 0.997 Pa: 0.986 Exon 4 20726 21057 ( 332 n); score: 1.000 Intron 4 21058 21320 ( 263 n); Pd: 1.000 Pa: 0.349 Exon 5 21321 21403 ( 83 n); score: 1.000 Intron 5 21404 21556 ( 153 n); Pd: 0.976 Pa: 0.999 Exon 6 21557 21632 ( 76 n); score: 1.000 Intron 6 21633 21718 ( 86 n); Pd: 0.997 Pa: 0.953 Exon 7 21719 21780 ( 62 n); score: 1.000 Intron 7 21781 21860 ( 80 n); Pd: 0.956 Pa: 0.998 Exon 8 21861 21956 ( 96 n); score: 1.000 Intron 8 21957 22050 ( 94 n); Pd: 1.000 Pa: 0.967 Exon 9 22051 22212 ( 162 n); score: 1.000 Intron 9 22213 22291 ( 79 n); Pd: 0.998 Pa: 0.999 Exon 10 22292 22520 ( 229 n); score: 1.000 PGS (20231 20298,20370 20506,20595 20644,20726 21057,21321 21363) SGN-E304303+ PGS (20233 20298,20370 20506,20595 20644,20726 20992) SGN-E325181+ PGS (20254 20298,20370 20506,20595 20644,20726 21057) SGN-E301096+ PGS (20261 20298,20370 20506,20595 20644,20726 20737) SGN-E394663+ PGS (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21574) SGN-E373433+ PGS (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21561) SGN-E373345+ PGS (20262 20298,20370 20506,20595 20644,20726 20795) SGN-E290590+ PGS (20607 20644,20726 21057,21321 21403,21557 21632,21719 21773) SGN-E306038+ PGS (20610 20644,20726 21057,21321 21383) SGN-E306039+ PGS (21325 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) SGN-E373432- PGS (21337 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22520) SGN-E373344- PGS (21352 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22455) SGN-E299398+ PGS (22198 22212,22292 22520) SGN-E398252- 3-phase translation of AGS-1 (+strand): . . . . . . 20231 AGAAATTGACTAGGAAAGAAACCAAAATTGAAACATGGCTCCAAAGGGCAAGGTCATCAG R N - L G K K P K L K H G S K G Q G H Q E I D - E R N Q N - N M A P K G K V I S K L T R K E T K I E T W L Q R A R S S . : . . . . . 20291 TTGCAGAG : CTGCTGTAGCGTATGGTCCAGGGCAGCCGTTGGTGGTAGAACAAGTGCAGGT L Q S : C C S V W S R A A V G G R T S A G C R : A A V A Y G P G Q P L V V E Q V Q V V A E : L L - R M V Q G S R W W - N K C R . . . . . . 20422 AGATCCACCTCAGAAAATGGAGGTCCGAATTAAGATTCTCTTTACTTCCATCTGTCACAC R S T S E N G G P N - D S L Y F H L S H D P P Q K M E V R I K I L F T S I C H T - I H L R K W R S E L R F S L L P S V T . . . : . . . 20482 GGATCTCAGTGCTTGGAAAGGCGAG : AGCGAAGCTCAACGAGCTTATCCTCGAATTCTGGG G S Q C L E R R : E R S S T S L S S N S G D L S A W K G E : S E A Q R A Y P R I L G R I S V L G K A R : A K L N E L I L E F W . . : . . . . 20630 ACATGAAGCATCGGG : AGTGGTGGAGAGCGTGGGAGAAGGTGTAATTGACATGAAAGAGGG T - S I G : S G G E R G R R C N - H E R G H E A S G : V V E S V G E G V I D M K E G D M K H R : E W W R A W E K V - L T - K R . . . . . . 20771 AGATCAAGTCGTAGCGATTTTCAATGGTGAATGCGGAGAGTGCATATATTGCAAATCATC R S S R S D F Q W - M R R V H I L Q I I D Q V V A I F N G E C G E C I Y C K S S E I K S - R F S M V N A E S A Y I A N H . . . . . . 20831 AAAGAAAACCAACTTGTGTGGCAAGTTCCGCGTCAATCCATTCAAAAGTGTGATGGAAAG K E N Q L V W Q V P R Q S I Q K C D G K K K T N L C G K F R V N P F K S V M E S Q R K P T C V A S S A S I H S K V - W K . . . . . . 20891 TGACGGAAAATGCAGGTTCAGGAACAAGGATGGCATACCCATTTATCATTTTCTTAGTAC - R K M Q V Q E Q G W H T H L S F S - Y D G K C R F R N K D G I P I Y H F L S T V T E N A G S G T R M A Y P F I I F L V . . . . . . 20951 TTCAACATTCACCGAATACACTGTTGTTGATTCTGCTTGCTTAGTCAAAATTGACCCTCA F N I H R I H C C - F C L L S Q N - P S S T F T E Y T V V D S A C L V K I D P H L Q H S P N T L L L I L L A - S K L T L . . . . . : . 21011 TGCCTCACTTGACAAGATGACCTTGCTTAGCTGCGGCGTATCCACTG : GTCTAGGGGCTGC C L T - Q D D L A - L R R I H W : S R G C A S L D K M T L L S C G V S T : G L G A A M P H L T R - P C L A A A Y P L : V - G L . . . . . . 21334 GTGGAACACGGCTGACGTTCAAACAGGGGAAACGGTGGCAGTCTTTGGATTAGGAGCTGT V E H G - R S N R G N G G S L W I R S C W N T A D V Q T G E T V A V F G L G A V R G T R L T F K Q G K R W Q S L D - E L . : . . . . . 21394 TGGTTTGGCC : GTTGTTGAAGGGGCACGGACCAGAGGCGCCTCAAAGATCATAGGGGTGGA W F G : R C - R G T D Q R R L K D H R G G G L A : V V E G A R T R G A S K I I G V D L V W P : L L K G H G P E A P Q R S - G W . . . : . . . 21607 TATTAACCCTGAAAAACGTATTAAAG : GTGAAGCAATTGGAATTACTGACTTCATCAATCC Y - P - K T Y - R : - S N W N Y - L H Q S I N P E K R I K : G E A I G I T D F I N P I L T L K N V L K : V K Q L E L L T S S I . . . : . . . 21753 CAAAGAAATCGATGTGCCCGTCCATGAG : AAAATAAGGGAAATGAGCGAGGGGGGCGTGGA Q R N R C A R P - : E N K G N E R G G R G K E I D V P V H E : K I R E M S E G G V D P K K S M C P S M R : K - G K - A R G A W . . . . . . 21893 CTATAGCTTTGAGTGTGCTGGAAATATGCAAGTTCTTCGAGAGGCATTTTTATCCACACA L - L - V C W K Y A S S S R G I F I H T Y S F E C A G N M Q V L R E A F L S T H T I A L S V L E I C K F F E R H F Y P H . : . . . . . 21953 TGAT : GGATGGGGCATGGCAATCGTTTTAGGAATTCATCCGACACCAAAATTGCTATCACT - : W M G H G N R F R N S S D T K I A I T D : G W G M A I V L G I H P T P K L L S L M M : D G A W Q S F - E F I R H Q N C Y H . . . . . . 22107 CCATCCAATGGAACTGTTCGATGGCAGAAGGATTGTGGCTTCTGTCTTTGGTGACTTCAA P S N G T V R W Q K D C G F C L W - L Q H P M E L F D G R R I V A S V F G D F K S I Q W N C S M A E G L W L L S L V T S . . . . . : . 22167 AGGAAAATCCCAACTCCCTTTTTTAGCTGAACAATGCATGGCTGGG : GTGGTCAAATTAGA R K I P T P F F S - T M H G W : G G Q I R G K S Q L P F L A E Q C M A G : V V K L D K E N P N S L F - L N N A W L G : W S N - . . . . . . 22306 CGAGTTTATTACTCACAGACTACCATTTGAGAAGATCAATGAAGCTTTTCAACTGCTTCT R V Y Y S Q T T I - E D Q - S F S T A S E F I T H R L P F E K I N E A F Q L L L T S L L L T D Y H L R R S M K L F N C F . . . . . . 22366 CGATGGCAAATCCTTGAGATGCCTTCTTCATCTTTCCTAATAGTAACAAATTTATTAAAG R W Q I L E M P S S S F L I V T N L L K D G K S L R C L L H L S - - - Q I Y - S S M A N P - D A F F I F P N S N K F I K . . . . . . 22426 CAATTCCTCCTATCCTGTATTCTATTATTCTGCACTTTCAAATATATTGTATTTACTTTC Q F L L S C I L L F C T F K Y I V F T F N S S Y P V F Y Y S A L S N I L Y L L S A I P P I L Y S I I L H F Q I Y C I Y F . . . . 22486 TACATGTTTTATCAATGGAGTAAATTTTATAAAAA Y M F Y Q W S K F Y K T C F I N G V N F I K L H V L S M E - I L - K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-3_AGS-1_PPS_1 (20262 20298,20370 20506,20595 20644,20726 21057,21321 21403,21557 21632,21719 21780,21861 21956,22051 22212,22292 22405) (frame '2'; 1146 bp, 382 residues) 1 NMAPKGKVIS CRAAVAYGPG QPLVVEQVQV DPPQKMEVRI KILFTSICHT DLSAWKGESE 61 AQRAYPRILG HEASGVVESV GEGVIDMKEG DQVVAIFNGE CGECIYCKSS KKTNLCGKFR 121 VNPFKSVMES DGKCRFRNKD GIPIYHFLST STFTEYTVVD SACLVKIDPH ASLDKMTLLS 181 CGVSTGLGAA WNTADVQTGE TVAVFGLGAV GLAVVEGART RGASKIIGVD INPEKRIKGE 241 AIGITDFINP KEIDVPVHEK IREMSEGGVD YSFECAGNMQ VLREAFLSTH DGWGMAIVLG 301 IHPTPKLLSL HPMELFDGRR IVASVFGDFK GKSQLPFLAE QCMAGVVKLD EFITHRLPFE 361 KINEAFQLLL DGKSLRCLLH LS- AGS-2 (21257 21498) SCR (e 0.996) Exon 1 21257 21498 ( 242 n); score: 0.996 PGS (21257 21498) SGN-E312092+ 3-phase translation of AGS-2 (+strand): . . . . . . 21257 AGACTTTGTTTTTTGATTATAAAGGCAAGTAGGGCATAGGAATTAAATGGGATGGATGAT R L C F L I I K A S R A - E L N G M D D D F V F - L - R Q V G H R N - M G W M M T L F F D Y K G K - G I G I K W D G - . . . . . . 21317 GCAGGTCTAGGGGCTGCGTGGAACACGGCTGACGTTCAAACAGGGGAAACGGTGGCAGTC A G L G A A W N T A D V Q T G E T V A V Q V - G L R G T R L T F K Q G K R W Q S C R S R G C V E H G - R S N R G N G G S . . . . . . 21377 TTTGGATTAGGAGCTGTTGGTTTGGCCGTAAGCTTTTCTCTAATAAATAAAAACAATTGT F G L G A V G L A V S F S L I N K N N C L D - E L L V W P - A F L - - I K T I V L W I R S C W F G R K L F S N K - K Q L . . . . . . 21437 TTTGTCTCCATCAATTAAATACCCTCACATGGATTAGTACCTTACCCAATTTATTTTACT F V S I N - I P S H G L V P Y P I Y F T L S P S I K Y P H M D - Y L T Q F I L L F C L H Q L N T L T W I S T L P N L F Y . 21497 TA L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 21498 TAAGTAAAATAAATTGGGTAAGGTACTAATCCATGTGAGGGTATTTAATTGATGGAGACA - V K - I G - G T N P C E G I - L M E T K - N K L G K V L I H V R V F N - W R Q S K I N W V R Y - S M - G Y L I D G D . . . . . . 21438 AAACAATTGTTTTTATTTATTAGAGAAAAGCTTACGGCCAAACCAACAGCTCCTAATCCA K Q L F L F I R E K L T A K P T A P N P N N C F Y L L E K S L R P N Q Q L L I Q K T I V F I Y - R K A Y G Q T N S S - S . . . . . . 21378 AAGACTGCCACCGTTTCCCCTGTTTGAACGTCAGCCGTGTTCCACGCAGCCCCTAGACCT K T A T V S P V - T S A V F H A A P R P R L P P F P L F E R Q P C S T Q P L D L K D C H R F P C L N V S R V P R S P - T . . . . . . 21318 GCATCATCCATCCCATTTAATTCCTATGCCCTACTTGCCTTTATAATCAAAAAACAAAGT A S S I P F N S Y A L L A F I I K K Q S H H P S H L I P M P Y L P L - S K N K V C I I H P I - F L C P T C L Y N Q K T K . 21258 CT S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (21325 21403,21557 21632,21719 21780,21861 22212,22292 22519) SCR (e 1.000 d 0.976 a 0.999,e 1.000 d 0.997 a 0.953,e 1.000 d 0.956 a 0.998,e 0.993 d 0.998 a 0.999,e 0.989) Exon 1 21325 21403 ( 79 n); score: 1.000 Intron 1 21404 21556 ( 153 n); Pd: 0.976 Pa: 0.999 Exon 2 21557 21632 ( 76 n); score: 1.000 Intron 2 21633 21718 ( 86 n); Pd: 0.997 Pa: 0.953 Exon 3 21719 21780 ( 62 n); score: 1.000 Intron 3 21781 21860 ( 80 n); Pd: 0.956 Pa: 0.998 Exon 4 21861 22212 ( 352 n); score: 0.993 Intron 4 22213 22291 ( 79 n); Pd: 0.998 Pa: 0.999 Exon 5 22292 22519 ( 228 n); score: 0.989 PGS (21325 21403,21557 21632,21719 21780,21861 22212,22292 22519) SGN-E540404- 3-phase translation of AGS-3 (+strand): . . . . . . 21325 AGGGGCTGCGTGGAACACGGCTGACGTTCAAACAGGGGAAACGGTGGCAGTCTTTGGATT R G C V E H G - R S N R G N G G S L W I G A A W N T A D V Q T G E T V A V F G L G L R G T R L T F K Q G K R W Q S L D . . : . . . . 21385 AGGAGCTGTTGGTTTGGCC : GTTGTTGAAGGGGCACGGACCAGAGGCGCCTCAAAGATCAT R S C W F G : R C - R G T D Q R R L K D H G A V G L A : V V E G A R T R G A S K I I - E L L V W P : L L K G H G P E A P Q R S . . . . : . . 21598 AGGGGTGGATATTAACCCTGAAAAACGTATTAAAG : GTGAAGCAATTGGAATTACTGACTT R G G Y - P - K T Y - R : - S N W N Y - L G V D I N P E K R I K : G E A I G I T D F - G W I L T L K N V L K : V K Q L E L L T . . . . : . . 21744 CATCAATCCCAAAGAAATCGATGTGCCCGTCCATGAG : AAAATAAGGGAAATGAGCGAGGG H Q S Q R N R C A R P - : E N K G N E R G I N P K E I D V P V H E : K I R E M S E G S S I P K K S M C P S M R : K - G K - A R . . . . . . 21884 GGGCGTGGACTATAGCTTTGAGTGTGCTGGAAATATGCAAGTTCTTCGAGAGGCATTTTT G R G L - L - V C W K Y A S S S R G I F G V D Y S F E C A G N M Q V L R E A F L G A W T I A L S V L E I C K F F E R H F . . . . . . 21944 ATCCACACATGATGCAAGTTTTTTTTTTCTTTTTTTTTTTGTACTATTTATTTATCTACA I H T - C K F F F S F F F C T I Y L S T S T H D A S F F F L F F F V L F I Y L Q Y P H M M Q V F F F F F F L Y Y L F I Y . . . . . . 22004 GAATTATAGAAGATTTAAAAAGAAACCCCTCTTTCTACTTATTATAGGGATGGGGCATGG E L - K I - K E T P L S T Y Y R D G A W N Y R R F K K K P L F L L I I G M G H G R I I E D L K R N P S F Y L L - G W G M . . . . . . 22064 CAATCGTTTTAGGAATTCATCCGACACCAAAATTGCTATCACTCCATCCAATGGAACTGT Q S F - E F I R H Q N C Y H S I Q W N C N R F R N S S D T K I A I T P S N G T V A I V L G I H P T P K L L S L H P M E L . . . . . . 22124 TCGATGGCAGAAGGATTGTGGCTTCTGTCTTTGGTGACTTCAAAGGAAAATCCCAACTCC S M A E G L W L L S L V T S K E N P N S R W Q K D C G F C L W - L Q R K I P T P F D G R R I V A S V F G D F K G K S Q L . . . : . . . 22184 CTTTTTTAGCTGAACAATGCATGGCTGGG : GTGGTCAAATTAGACGAGTTTATTACTCACA L F - L N N A W L G : W S N - T S L L L T F F S - T M H G W : G G Q I R R V Y Y S Q P F L A E Q C M A G : V V K L D E F I T H . . . . . . 22323 GACTACCATTTGAGAAGATCAATGAAGCTTTTCAACTGCTTCTCGATGGCAAATCCTTGA D Y H L R R S M K L F N C F S M A N P - T T I - E D Q - S F S T A S R W Q I L E R L P F E K I N E A F Q L L L D G K S L . . . . . . 22383 GATGCCTTCTTCATCTTTCCTAATAGTAACAAATTTATTAAAGCAATTCCTCCTATCCTG D A F F I F P N S N K F I K A I P P I L M P S S S F L I V T N L L K Q F L L S C R C L L H L S - - - Q I Y - S N S S Y P . . . . . . 22443 TATTCTATTATTCTGCACTTTCAAATATATTGTATTTACTTTCTACATGTTTTATCAATG Y S I I L H F Q I Y C I Y F L H V L S M I L L F C T F K Y I V F T F Y M F Y Q W V F Y Y S A L S N I L Y L L S T C F I N . . 22503 GAGTAAATTTTATAAAA E - I L - S K F Y K G V N F I K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-3_AGS-3_PPS_1 (21326 21403,21557 21632,21719 21780,21861 22160) (frame '2'; 513 bp, 171 residues) 1 GAAWNTADVQ TGETVAVFGL GAVGLAVVEG ARTRGASKII GVDINPEKRI KGEAIGITDF 61 INPKEIDVPV HEKIREMSEG GVDYSFECAG NMQVLREAFL STHDASFFFL FFFVLFIYLQ 121 NYRRFKKKPL FLLIIGMGHG NRFRNSSDTK IAITPSNGTV RWQKDCGFCL W- PGL 4 (- strand): 26239 25587 AGS-1 (26239 25587) SCR (e 0.913) Exon 1 26239 25587 ( 653 n); score: 0.913 PGS (26239 25587) SGN-E547448- 3-phase translation of AGS-1 (-strand): . . . . . . 26239 CCAAAGTCATATGCGGCCACTCAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAG P K S Y A A T Q T C P D Y S F R H L N - Q S H M R P L K L V P I I H L D T S T R K V I C G H S N L S R L F I - T P Q L . . . . . . 26179 ACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAACATTTTTTCG T Y Y L L N T S T I L N L N H L N I F S R T T Y - T L Q P F - I - T I - T F F R D V L P I E H F N H S E F E P F E H F F . . . . . . 26119 AGAATAAACAAAAAAAGAGGGTGTGTGAAATACACTCGCGCTGACATGTCAATTTGACCA R I N K K R G C V K Y T R A D M S I - P E - T K K E G V - N T L A L T C Q F D Q E N K Q K K R V C E I H S R - H V N L T . . . . . . 26059 ATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAA I K - - H V L F F N P K N Y L N I I L - L N N D M C Y F L I Q K I I - T L Y Y K N - I M T C V I F - S K K L F K H Y I I . . . . . . 25999 AGTAAAAAAATTTAAGAAATTATTTTAAAGTAAAAAAAATGAAAAAAAAAACAAAACTTA S K K I - E I I L K - K K - K K K Q N L V K K F K K L F - S K K N E K K N K T - K - K N L R N Y F K V K K M K K K T K L . . . . . . 25939 AACACCACTTCCCTGCCCCTTCAACCGGAACAAAAAATACATTTCCTCTAACTCCATTAA N T T S L P L Q P E Q K I H F L - L H - T P L P C P F N R N K K Y I S S N S I N K H H F P A P S T G T K N T F P L T P L . . . . . . 25879 TGGTGACCCTCCCCTCCCCTCCTTGTACAGTTCCATCTTTAACCCAACAATTTTTTTTTC W - P S P P L L V Q F H L - P N N F F F G D P P L P S L Y S S I F N P T I F F S M V T L P S P P C T V P S L T Q Q F F F . . . . . . 25819 ATCAGTTTTTTTATTAATTATAACTTTTTATTTCATCTCGTTTTTTAGGTAGAGAAAGAT I S F F I N Y N F L F H L V F - V E K D S V F L L I I T F Y F I S F F R - R K M H Q F F Y - L - L F I S S R F L G R E R . . . . . . 25759 GGGCAAAAAAATCTCTCCGAAAAAATTTATAAATGAAACAAAATGTTAAGAATTTTAAAA G Q K N L S E K I Y K - N K M L R I L K G K K I S P K K F I N E T K C - E F - N W A K K S L R K N L - M K Q N V K N F K . . . . . . 25699 CCATTAGAATGGTGGGGGAAGAAGATAAACACTAAGACTAAGAATTTTGAAATCATTAGA P L E W W G K K I N T K T K N F E I I R H - N G G G R R - T L R L R I L K S L E T I R M V G E E D K H - D - E F - N H - . . . . . . 25639 ATGGTGGGGGAAGAAGATAACCATTGGTGTATGGGTATGGGGGTTGGGTTGGG M V G E E D N H W C M G M G V G L W W G K K I T I G V W V W G L G W N G G G R R - P L V Y G Y G G W V G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 25587 CCCAACCCAACCCCCATACCCATACACCAATGGTTATCTTCTTCCCCCACCATTCTAATG P N P T P I P I H Q W L S S S P T I L M P T Q P P Y P Y T N G Y L L P P P F - - Q P N P H T H T P M V I F F P H H S N . . . . . . 25647 ATTTCAAAATTCTTAGTCTTAGTGTTTATCTTCTTCCCCCACCATTCTAATGGTTTTAAA I S K F L V L V F I F F P H H S N G F K F Q N S - S - C L S S S P T I L M V L K D F K I L S L S V Y L L P P P F - W F - . . . . . . 25707 ATTCTTAACATTTTGTTTCATTTATAAATTTTTTCGGAGAGATTTTTTTGCCCATCTTTC I L N I L F H L - I F S E R F F C P S F F L T F C F I Y K F F R R D F F A H L S N S - H F V S F I N F F G E I F L P I F . . . . . . 25767 TCTACCTAAAAAACGAGATGAAATAAAAAGTTATAATTAATAAAAAAACTGATGAAAAAA S T - K T R - N K K L - L I K K L M K K L P K K R D E I K S Y N - - K N - - K K L Y L K N E M K - K V I I N K K T D E K . . . . . . 25827 AAATTGTTGGGTTAAAGATGGAACTGTACAAGGAGGGGAGGGGAGGGTCACCATTAATGG K L L G - R W N C T R R G G E G H H - W N C W V K D G T V Q G G E G R V T I N G K I V G L K M E L Y K E G R G G S P L M . . . . . . 25887 AGTTAGAGGAAATGTATTTTTTGTTCCGGTTGAAGGGGCAGGGAAGTGGTGTTTAAGTTT S - R K C I F C S G - R G R E V V F K F V R G N V F F V P V E G A G K W C L S F E L E E M Y F L F R L K G Q G S G V - V . . . . . . 25947 TGTTTTTTTTTTCATTTTTTTTACTTTAAAATAATTTCTTAAATTTTTTTACTTTATAAT C F F F H F F Y F K I I S - I F L L Y N V F F F I F F T L K - F L K F F Y F I I L F F F S F F L L - N N F L N F F T L - . . . . . . 26007 ATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAA I M F K - F F G L K N N T C H Y L I G Q - C L N N F L D - K I T H V I I - L V K Y N V - I I F W I K K - H M S L F N W S . . . . . . 26067 ATTGACATGTCAGCGCGAGTGTATTTCACACACCCTCTTTTTTTGTTTATTCTCGAAAAA I D M S A R V Y F T H P L F L F I L E K L T C Q R E C I S H T L F F C L F S K K N - H V S A S V F H T P S F F V Y S R K . . . . . . 26127 ATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTG M F K W F K F R M V E V F N R - Y V - L C S N G S N S E W L K C S I G S T S S - N V Q M V Q I Q N G - S V Q - V V R L V . . . . . . 26187 AGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGG R C L N E - S G Q V - V A A Y D F G V - M N N R D K F E W P H M T L E V S K - I I G T S L S G R I - L W Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 27710 28287 AGS-1 (27710 28076,28125 28157,28232 28287) SCR (e 0.879 d 0.000 a 0.888,e 0.697 d 0.000 a 0.000,e 0.714) Exon 1 27710 28076 ( 367 n); score: 0.879 Intron 1 28077 28124 ( 48 n); Pd: 0.000 Pa: 0.888 Exon 2 28125 28157 ( 33 n); score: 0.697 Intron 2 28158 28231 ( 74 n); Pd: 0.000 Pa: 0.000 Exon 3 28232 28287 ( 56 n); score: 0.714 PGS (27710 28076,28125 28157,28232 28287) SGN-E542827+ 3-phase translation of AGS-1 (+strand): . . . . . . 27710 TTGACTTTTTCTTTGTTTTAATGACTAATTTATAATTATTATTTTGATAATCAAATTTAT L T F S L F - - L I Y N Y Y F D N Q I Y - L F L C F N D - F I I I I L I I K F I D F F F V L M T N L - L L F - - S N L . . . . . . 27770 TTATGTTACACTAATATTCTTGTAAAACTTATTATAGATGACCAATTTTTTTCTTCGAAT L C Y T N I L V K L I I D D Q F F S S N Y V T L I F L - N L L - M T N F F L R I F M L H - Y S C K T Y Y R - P I F F F E . . . . . . 27830 ACGAAATTAAATTACAATACACAAAAAAAAAATAGTTTGAATTTTTTTCCTTTAAACTAA T K L N Y N T Q K K N S L N F F P L N - R N - I T I H K K K I V - I F F L - T K Y E I K L Q Y T K K K - F E F F S F K L . . . . . . 27890 GGAATGAAAGAAAAAACAAAATAAGAATAAAAAACTCAAATAATTATAATAAAAGAAGTC G M K E K T K - E - K T Q I I I I K E V E - K K K Q N K N K K L K - L - - K K S R N E R K N K I R I K N S N N Y N K R S . . . . . . 27950 AAAAATTAATTTATATATGAAAAAAATTAAAATATACCTTGAACTATGATAGAAGAATCA K N - F I Y E K N - N I P - T M I E E S K I N L Y M K K I K I Y L E L - - K N H Q K L I Y I - K K L K Y T L N Y D R R I . . . . . . 28010 TATATACCCCTAAATAATTTTTTTTAAAAAATTAGAAGTAACAAATATAAATTTAAAACT Y I P L N N F F - K I R S N K Y K F K T I Y P - I I F F K K L E V T N I N L K L I Y T P K - F F L K N - K - Q I - I - N . : . . . : . . 28070 GATTTTT : TGGTATATGTGAGCCGTTTGTATAACGATAAGG : CTCTAAATGACAAAGTTGAG D F : L V Y V S R L Y N D K : A L N D K V E I F : W Y M - A V C I T I R : L - M T K L R - F F : G I C E P F V - R - G : S K - Q S - . . . . 28252 GGGTATATCAGACCCTTTTCCCTTTATTAAAAATAC G Y I R P F S L Y - K Y G I S D P F P F I K N G V Y Q T L F P L L K I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (27798 28184,28221 28274) SCR (e 0.908 d 0.000 a 0.000,e 0.963) Exon 1 27798 28184 ( 387 n); score: 0.908 Intron 1 28185 28220 ( 36 n); Pd: 0.000 Pa: 0.000 Exon 2 28221 28274 ( 54 n); score: 0.963 PGS (27798 28184,28221 28274) SGN-E243215+ 3-phase translation of AGS-2 (+strand): . . . . . . 27798 TTATTATAGATGACCAATTTTTTTCTTCGAATACGAAATTAAATTACAATACACAAAAAA L L - M T N F F L R I R N - I T I H K K Y Y R - P I F F F E Y E I K L Q Y T K K I I D D Q F F S S N T K L N Y N T Q K . . . . . . 27858 AAAATAGTTTGAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAAT K I V - I F F L - T K E - K K K Q N K N K - F E F F S F K L R N E R K N K I R I K N S L N F F P L N - G M K E K T K - E . . . . . . 27918 AAAAAACTCAAATAATTATAATAAAAGAAGTCAAAAATTAATTTATATATGAAAAAAATT K K L K - L - - K K S K I N L Y M K K I K N S N N Y N K R S Q K L I Y I - K K L - K T Q I I I I K E V K N - F I Y E K N . . . . . . 27978 AAAATATACCTTGAACTATGATAGAAGAATCATATATACCCCTAAATAATTTTTTTTAAA K I Y L E L - - K N H I Y P - I I F F K K Y T L N Y D R R I I Y T P K - F F L K - N I P - T M I E E S Y I P L N N F F - . . . . . . 28038 AAATTAGAAGTAACAAATATAAATTTAAAACTGATTTTTTAATTTCCGTTAAATGAAAGG K L E V T N I N L K L I F - F P L N E R N - K - Q I - I - N - F F N F R - M K G K I R S N K Y K F K T D F L I S V K - K . . . . . . 28098 TATATGTAAGCCATTTTGTAACGGCAGTGGTATATGTGAGCCGTTTGTATAACGATAAGG Y M - A I L - R Q W Y M - A V C I T I R I C K P F C N G S G I C E P F V - R - G V Y V S H F V T A V V Y V S R L Y N D K . . . : . . . 28158 GCATATATGTGCCACTTTTATAATAAG : GGGTATATCAGCTCTAAATGACAAAGTTGAGGG A Y M C H F Y N K : G Y I S S K - Q S - G H I C A T F I I R : G I S A L N D K V E G G I Y V P L L - - : G V Y Q L - M T K L R . . . 28254 GTATATCAGACCCTTTTCCCT V Y Q T L F P Y I R P F S G I S D P F P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (- strand): 33351 33081 AGS-1 (33351 33081) SCR (e 0.841) Exon 1 33351 33081 ( 271 n); score: 0.841 PGS (33213 33081) SGN-E376578+ PGS (33213 33081) SGN-E393272+ PGS (33213 33081) SGN-E210228+ PGS (33251 33096) SGN-E318957- PGS (33351 33104) SGN-E326311+ 3-phase translation of AGS-1 (-strand): . . . . . . 33351 ATACTCTCTCCGTTTCAAAAAGAATGTCCCTATTTTCTTTTTAGTCCGTTTCAAAAAAGA I L S P F Q K E C P Y F L F S P F Q K R Y S L R F K K N V P I F F L V R F K K E T L S V S K R M S L F S F - S V S K K . . . . . . 33291 ATGACCCCTTTCCTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGGCATGTTTAAG M T P F L F W Q H F N F N F P R G M F K - P L S F F G N T L T L T F H V A C L R N D P F P F L A T L - L - L S T W H V - . . . . . . 33231 ACCAGAAGATTAAAGGGAATTTTGGTACATTTGACATAACTTTAATTTAGAACCACAAGA T R R L K G I L V H L T - L - F R T T R P E D - R E F W Y I - H N F N L E P Q D D Q K I K G N F G T F D I T L I - N H K . . . . . . 33171 TTAAAAAGTTTCTTTCTTTTCTTAAACTCCTTCCAAGTCAAACTAGGTCATCCTTTTTGA L K S F F L F L N S F Q V K L G H P F - - K V S F F S - T P S K S N - V I L F E I K K F L S F L K L L P S Q T R S S F L . . . . 33111 AACGGAGGAAGTATATATTAATTAATTATAG N G G S I Y - L I I T E E V Y I N - L - K R R K Y I L I N Y Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 33081 CTATAATTAATTAATATATACTTCCTCCGTTTCAAAAAGGATGACCTAGTTTGACTTGGA L - L I N I Y F L R F K K D D L V - L G Y N - L I Y T S S V S K R M T - F D L E I I N - Y I L P P F Q K G - P S L T W . . . . . . 33141 AGGAGTTTAAGAAAAGAAAGAAACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCA R S L R K E R N F L I L W F - I K V M S G V - E K K E T F - S C G S K L K L C Q K E F K K R K K L F N L V V L N - S Y V . . . . . . 33201 AATGTACCAAAATTCCCTTTAATCTTCTGGTCTTAAACATGCCACGTGGAAAGTTAAAGT N V P K F P L I F W S - T C H V E S - S M Y Q N S L - S S G L K H A T W K V K V K C T K I P F N L L V L N M P R G K L K . . . . . . 33261 TAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTGAAACGGACTAAAAAGAAAAT - S V A K K G K G S F F F E T D - K E N K V L P K K E R G H S F L K R T K K K I L K C C Q K R K G V I L F - N G L K R K . . . . 33321 AGGGACATTCTTTTTGAAACGGAGAGAGTAT R D I L F E T E R V G T F F L K R R E Y - G H S F - N G E S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 36537 37221 AGS-1 (36537 37062,37144 37221) SCR (e 1.000 d 0.977 a 0.896,e 1.000) Exon 1 36537 37062 ( 526 n); score: 1.000 Intron 1 37063 37143 ( 81 n); Pd: 0.977 Pa: 0.896 Exon 2 37144 37221 ( 78 n); score: 1.000 PGS (36537 37062,37144 37221) SGN-E269095+ 3-phase translation of AGS-1 (+strand): . . . . . . 36537 AGGTACAACAAAGTCTTCTGCTCCTGAGAGTCGAATATTCTCGAAAGCTCACCATCATGA R Y N K V F C S - E S N I L E S S P S - G T T K S S A P E S R I F S K A H H H D V Q Q S L L L L R V E Y S R K L T I M . . . . . . 36597 TTCTAATGGTAAACTGAGGGGAATTTCTGGGAGCAATCTGAGTAATAAAAGAGAGAGTTC F - W - T E G N F W E Q S E - - K R E F S N G K L R G I S G S N L S N K R E S S I L M V N - G E F L G A I - V I K E R V . . . . . . 36657 GTCAATGGATGCTGGTAGGGATGAAGAGAGGCGTGAAAGACCAAAGAAAATGTTGAAAGA V N G C W - G - R E A - K T K E N V E R S M D A G R D E E R R E R P K K M L K E R Q W M L V G M K R G V K D Q R K C - K . . . . . . 36717 GCTCCCAAAGTCATCAGTTGGTTCAGCATCGAAGATATTGCAGTCGACCAAGCTCTCTCA A P K V I S W F S I E D I A V D Q A L S L P K S S V G S A S K I L Q S T K L S H S S Q S H Q L V Q H R R Y C S R P S S L . . . . . . 36777 TGCTCCAGTGAAGAAAACAGTATCAGAAGCCAAGGATTCAGTCCCCAATTCTTCTGCTAA C S S E E N S I R S Q G F S P Q F F C - A P V K K T V S E A K D S V P N S S A K M L Q - R K Q Y Q K P R I Q S P I L L L . . . . . . 36837 AGCATCAACTGTGCGTAGTAACCCTGCTAGTGCACGCTCTGCAGAGTCTTCTAGCTCACT S I N C A - - P C - C T L C R V F - L T A S T V R S N P A S A R S A E S S S S L K H Q L C V V T L L V H A L Q S L L A H . . . . . . 36897 GCAAAGTGAGAGTGCGGCACACATTCAGAATAAAGCTGCAGGTACACATTTGACACAAAA A K - E C G T H S E - S C R Y T F D T K Q S E S A A H I Q N K A A G T H L T Q K C K V R V R H T F R I K L Q V H I - H K . . . . . . 36957 ATGCGAGAAGACAAACCAGCCAAGTTGCCAGCCATCTTCTAAACTGAATGCACACCTGAT M R E D K P A K L P A I F - T E C T P D C E K T N Q P S C Q P S S K L N A H L M N A R R Q T S Q V A S H L L N - M H T - . . . . . : . 37017 GCATCCTCCGTCTTCATCATCCCCTGCAGCACTAAGTGATGAAGAG : CTTGCTCTACTGCT A S S V F I I P C S T K - - R : A C S T A H P P S S S S P A A L S D E E : L A L L L C I L R L H H P L Q H - V M K S : L L Y C . . . . . . 37158 TCATCAAGAACTTAATAGTTCTCCTAGAGTTCCTCGAGTGCCACGGATGCGCCATGCTGG S S R T - - F S - S S S S A T D A P C W H Q E L N S S P R V P R V P R M R H A G F I K N L I V L L E F L E C H G C A M L . 37218 TAGC - S V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-7_AGS-1_PPS_1 (36538 37062,37144 37221) (frame '2'; 603 bp, 201 residues) 1 GTTKSSAPES RIFSKAHHHD SNGKLRGISG SNLSNKRESS SMDAGRDEER RERPKKMLKE 61 LPKSSVGSAS KILQSTKLSH APVKKTVSEA KDSVPNSSAK ASTVRSNPAS ARSAESSSSL 121 QSESAAHIQN KAAGTHLTQK CEKTNQPSCQ PSSKLNAHLM HPPSSSSPAA LSDEELALLL 181 HQELNSSPRV PRVPRMRHAG S PGL 8 (+ strand): 40816 44956 AGS-1 (40816 40917,41023 41188,43809 44057,44842 44956) SCR (e 1.000 d 0.997 a 0.997,e 1.000 d 0.228 a 0.998,e 1.000 d 0.995 a 0.982,e 1.000) Exon 1 40816 40917 ( 102 n); score: 1.000 Intron 1 40918 41022 ( 105 n); Pd: 0.997 Pa: 0.997 Exon 2 41023 41188 ( 166 n); score: 1.000 Intron 2 41189 43808 (2620 n); Pd: 0.228 Pa: 0.998 Exon 3 43809 44057 ( 249 n); score: 1.000 Intron 3 44058 44841 ( 784 n); Pd: 0.995 Pa: 0.982 Exon 4 44842 44956 ( 115 n); score: 1.000 PGS (40816 40917,41023 41188,43809 44057,44842 44956) SGN-E332392+ 3-phase translation of AGS-1 (+strand): . . . . . . 40816 AGAGACGCTTCGTGTATTTGTGCAGATCAAAACTCGAATCGGGGAATTTGGGTTTCTCCT R D A S C I C A D Q N S N R G I W V S P E T L R V F V Q I K T R I G E F G F L L R R F V Y L C R S K L E S G N L G F S . . . . . : . 40876 GTAATCTAGGGTTCATAACTCCCCCCTTTCGGATCTGCTAGG : GTATTGTGTGGATCATGA V I - G S - L P P F G S A R : V L C G S - - S R V H N S P L S D L L G : Y C V D H D C N L G F I T P P F R I C - : G I V W I M . . . . . . 41041 CGATTCCGGATTCAACCTACATGATGGAAAACGGATCTATTGAATTGCCGTGCACCTCTG R F R I Q P T - W K T D L L N C R A P L D S G F N L H D G K R I Y - I A V H L - T I P D S T Y M M E N G S I E L P C T S . . . . . . 41101 AAGAAGAGGCAAGGATCATTCAAGAGCTTATGAGCAAAGCTGAGTCCAATTTGAAACAAG K K R Q G S F K S L - A K L S P I - N K R R G K D H S R A Y E Q S - V Q F E T R E E E A R I I Q E L M S K A E S N L K Q . . . : . . . 41161 GCAATCTTTTTTATGTTGTTTCTAACAG : GTGGTTCATGGATTGGCAGAGGTACATTAGGA A I F F M L F L T : G G S W I G R G T L G Q S F L C C F - Q : V V H G L A E V H - E G N L F Y V V S N R : W F M D W Q R Y I R . . . . . . 43841 AGCCTCTTGGTGCTTATCCATTTAACGAGCATGCTACCGAATCTCTGCATTCTCTTTTAC S L L V L I H L T S M L P N L C I L F Y A S W C L S I - R A C Y R I S A F S F T K P L G A Y P F N E H A T E S L H S L L . . . . . . 43901 CAAATTCAGCTAATAGACCTGGACCAATTGATAATAGCGATATAATAATTAGAGAAGCTG Q I Q L I D L D Q L I I A I - - L E K L K F S - - T W T N - - - R Y N N - R S - P N S A N R P G P I D N S D I I I R E A . . . . . . 43961 ACAGTGGAGATGATGATCCACAGCTTCTCAGAACTTTGGAAGAAGGGCGTGATTATGTGT T V E M M I H S F S E L W K K G V I M C Q W R - - S T A S Q N F G R R A - L C V D S G D D D P Q L L R T L E E G R D Y V . . . . : . . 44021 TGGTCCCACAAGAAGTATGGGAGAAGCTCTCTGAGTG : GTATAAAGGAGGACCAGCATTAC W S H K K Y G R S S L S : G I K E D Q H Y G P T R S M G E A L - V : V - R R T S I T L V P Q E V W E K L S E W : Y K G G P A L . . . . . . 44865 CTCGGAAAATGATATCTGTGGGAGATGCCAAGCAACTTAGTGTGGAGGTGTTCCCGTTGT L G K - Y L W E M P S N L V W R C S R C S E N D I C G R C Q A T - C G G V P V V P R K M I S V G D A K Q L S V E V F P L . . . . 44925 GTCTCAATTTATTTGATACTAGAGATAAAAGC V S I Y L I L E I K S Q F I - Y - R - K C L N L F D T R D K S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-8_AGS-1_PPS_1 (40917 40917,41023 41188,43809 44057,44842 44956) (frame '0'; 531 bp, 177 residues) 1 GIVWIMTIPD STYMMENGSI ELPCTSEEEA RIIQELMSKA ESNLKQGNLF YVVSNRWFMD 61 WQRYIRKPLG AYPFNEHATE SLHSLLPNSA NRPGPIDNSD IIIREADSGD DDPQLLRTLE 121 EGRDYVLVPQ EVWEKLSEWY KGGPALPRKM ISVGDAKQLS VEVFPLCLNL FDTRDKS AGS-2 (40948 41188,43809 44057,44842 44942) SCR (e 0.983 d 0.228 a 0.998,e 0.976 d 0.995 a 0.982,e 0.980) Exon 1 40948 41188 ( 241 n); score: 0.983 Intron 1 41189 43808 (2620 n); Pd: 0.228 Pa: 0.998 Exon 2 43809 44057 ( 249 n); score: 0.976 Intron 2 44058 44841 ( 784 n); Pd: 0.995 Pa: 0.982 Exon 3 44842 44942 ( 101 n); score: 0.980 PGS (40948 41188,43809 44057,44842 44942) SGN-E326036+ 3-phase translation of AGS-2 (+strand): . . . . . . 40948 TACTTTTCTTTTTTGTAAATTCAATTTTGAACTGGAATCTCTCTTCTTATTGTTTTTTAT Y F S F L - I Q F - T G I S L L I V F Y T F L F C K F N F E L E S L F L L F F I L F F F V N S I L N W N L S S Y C F L . . . . . . 41008 TATCATTATTACTAGGTATTGTGTGGATCATGACGATTCCGGATTCAACCTACATGATGG Y H Y Y - V L C G S - R F R I Q P T - W I I I T R Y C V D H D D S G F N L H D G L S L L L G I V W I M T I P D S T Y M M . . . . . . 41068 AAAACGGATCTATTGAATTGCCGTGCACCTCTGAAGAAGAGGCAAGGATCATTCAAGAGC K T D L L N C R A P L K K R Q G S F K S K R I Y - I A V H L - R R G K D H S R A E N G S I E L P C T S E E E A R I I Q E . . . . . . 41128 TTATGAGCAAAGCTGAGTCCAATTTGAAACAAGGCAATCTTTTTTATGTTGTTTCTAACA L - A K L S P I - N K A I F F M L F L T Y E Q S - V Q F E T R Q S F L C C F - Q L M S K A E S N L K Q G N L F Y V V S N . : . . . . . 41188 G : GTGGTTCATGGATTGGCAGAGGTACATTAGGAAGCCTCTTGGTGCTTATCCATTTAACG : G G S W I G R G T L G S L L V L I H L T : V V H G L A E V H - E A S W C L S I - R R : W F M D W Q R Y I R K P L G A Y P F N . . . . . . 43868 AGCATGCTACCGAATCTCTGCATTCTCTTTTACCAAATTCAGCTAATAGACCTGGACCAA S M L P N L C I L F Y Q I Q L I D L D Q A C Y R I S A F S F T K F S - - T W T N E H A T E S L H S L L P N S A N R P G P . . . . . . 43928 TTGATAATAGCGATATAATAATTAGAGAAGCTGACAGTGGAGATGATGATCCACAGCTTC L I I A I - - L E K L T V E M M I H S F - - - R Y N N - R S - Q W R - - S T A S I D N S D I I I R E A D S G D D D P Q L . . . . . . 43988 TCAGAACTTTGGAAGAAGGGCGTGATTATGTGTTGGTCCCACAAGAAGTATGGGAGAAGC S E L W K K G V I M C W S H K K Y G R S Q N F G R R A - L C V G P T R S M G E A L R T L E E G R D Y V L V P Q E V W E K . : . . . . . 44048 TCTCTGAGTG : GTATAAAGGAGGACCAGCATTACCTCGGAAAATGATATCTGTGGGAGATG S L S : G I K E D Q H Y L G K - Y L W E M L - V : V - R R T S I T S E N D I C G R C L S E W : Y K G G P A L P R K M I S V G D . . . . . . 44892 CCAAGCAACTTAGTGTGGAGGTGTTCCCGTTGTGTCTCAATTTATTTGATA P S N L V W R C S R C V S I Y L I Q A T - C G G V P V V S Q F I - A K Q L S V E V F P L C L N L F D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-8_AGS-2_PPS_1 (40950 41188,43809 44057,44842 44941) (frame '0'; 588 bp, 196 residues) 1 LFFFVNSILN WNLSSYCFLL SLLLGIVWIM TIPDSTYMME NGSIELPCTS EEEARIIQEL 61 MSKAESNLKQ GNLFYVVSNR WFMDWQRYIR KPLGAYPFNE HATESLHSLL PNSANRPGPI 121 DNSDIIIREA DSGDDDPQLL RTLEEGRDYV LVPQEVWEKL SEWYKGGPAL PRKMISVGDA 181 KQLSVEVFPL CLNLFD PGL 9 (+ strand): 46219 47497 AGS-1 (46219 46468,46557 46697,46980 47150,47468 47497) SCR (e 1.000 d 0.950 a 0.967,e 1.000 d 0.346 a 0.899,e 1.000 d 0.946 a 0.014,e 0.967) Exon 1 46219 46468 ( 250 n); score: 1.000 Intron 1 46469 46556 ( 88 n); Pd: 0.950 Pa: 0.967 Exon 2 46557 46697 ( 141 n); score: 1.000 Intron 2 46698 46979 ( 282 n); Pd: 0.346 Pa: 0.899 Exon 3 46980 47150 ( 171 n); score: 1.000 Intron 3 47151 47467 ( 317 n); Pd: 0.946 Pa: 0.014 Exon 4 47468 47497 ( 30 n); score: 0.967 PGS (46219 46468,46557 46697,46980 47150,47468 47497) SGN-E308205+ PGS (46219 46468,46557 46697,46980 47147) SGN-E308065+ 3-phase translation of AGS-1 (+strand): . . . . . . 46219 TGGATATAGCTCCAATGCATATCAAGGGAGTTCTTTGAACTCTAGTTATGGCGATATGGA W I - L Q C I S R E F F E L - L W R Y G G Y S S N A Y Q G S S L N S S Y G D M E D I A P M H I K G V L - T L V M A I W . . . . . . 46279 GGATGGATATGATAGTCTGAGGCCTGCAAGTAAAGGCGAAAGGGGAGGGTTGGCAGGATT G W I - - S E A C K - R R K G R V G R I D G Y D S L R P A S K G E R G G L A G L R M D M I V - G L Q V K A K G E G W Q D . . . . . . 46339 ATCCAATCTGGGAAACACATGCTTCATGAATAGTGCACTTCAGTGTCTGGTTCATACACC I Q S G K H M L H E - C T S V S G S Y T S N L G N T C F M N S A L Q C L V H T P Y P I W E T H A S - I V H F S V W F I H . . . . . . 46399 TCCGCTCGTCGAATACTTCTTGCAAGATTACACTGATGAGATTAACAGACAGAATCCTTT S A R R I L L A R L H - - D - Q T E S F P L V E Y F L Q D Y T D E I N R Q N P L L R S S N T S C K I T L M R L T D R I L . : . . . . . 46459 GGGGATGCAT : GGTGAGCTTGCACTTGCATTTGGTGAACTATTGAGGAAACTATGGTCCTC G D A : W - A C T C I W - T I E E T M V L G M H : G E L A L A F G E L L R K L W S S W G C M : V S L H L H L V N Y - G N Y G P . . . . . . 46607 TGGTCGAACACCCGTGGCACCCCGTGCATTCAAGGGAAAACTTGGTCGATTTGCTCCCCA W S N T R G T P C I Q G K T W S I C S P G R T P V A P R A F K G K L G R F A P Q L V E H P W H P V H S R E N L V D L L P . . . . : . . 46667 GTTTAGCGGATATAACCAGCATGACTCTCAG : GAACTACTCGCCTTCCTCTTGGATGGATT V - R I - P A - L S : G T T R L P L G W I F S G Y N Q H D S Q : E L L A F L L D G L S L A D I T S M T L R : N Y S P S S W M D . . . . . . 47009 ACATGAAGATTTAAATCGCGTCAAGCAAAAGCCGTATTTTGAGACAAAGGACTCAGACGG T - R F K S R Q A K A V F - D K G L R R H E D L N R V K Q K P Y F E T K D S D G Y M K I - I A S S K S R I L R Q R T Q T . . . . . . 47069 TCGTCCAGATGAAGAAGTTGCTAACGAGCTTTGGAGATACCACAGAGCCAGAAATGACTC S S R - R S C - R A L E I P Q S Q K - L R P D E E V A N E L W R Y H R A R N D S V V Q M K K L L T S F G D T T E P E M T . . . : . . . 47129 TGTTATAGTTGATATTTGCCAG : GGCCAATATAAGTCTACGCTGGTTTGCCCT C Y S - Y L P : G P I - V Y A G L P V I V D I C Q : G Q Y K S T L V C P L L - L I F A R : A N I S L R W F A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-9_AGS-1_PPS_1 (46220 46468,46557 46697,46980 47150,47468 47497) (frame '2'; 591 bp, 197 residues) 1 GYSSNAYQGS SLNSSYGDME DGYDSLRPAS KGERGGLAGL SNLGNTCFMN SALQCLVHTP 61 PLVEYFLQDY TDEINRQNPL GMHGELALAF GELLRKLWSS GRTPVAPRAF KGKLGRFAPQ 121 FSGYNQHDSQ ELLAFLLDGL HEDLNRVKQK PYFETKDSDG RPDEEVANEL WRYHRARNDS 181 VIVDICQGQY KSTLVCP PGL 10 (+ strand): 48648 50099 AGS-1 (48648 49036,49115 49391,49600 50099) SCR (e 1.000 d 0.938 a 0.999,e 1.000 d 0.997 a 0.994,e 1.000) Exon 1 48648 49036 ( 389 n); score: 1.000 Intron 1 49037 49114 ( 78 n); Pd: 0.938 Pa: 0.999 Exon 2 49115 49391 ( 277 n); score: 1.000 Intron 2 49392 49599 ( 208 n); Pd: 0.997 Pa: 0.994 Exon 3 49600 50099 ( 500 n); score: 1.000 PGS (48648 49036,49115 49391,49600 49658) SGN-E260989+ PGS (48648 49036,49115 49294) SGN-E253980+ PGS (48648 49036,49115 49185) SGN-E259162+ PGS (48648 48933) SGN-E370110+ PGS (48710 49024) SGN-E251540+ PGS (48755 49036,49115 49276) SGN-E207184+ PGS (48853 49036,49115 49391,49600 49818) SGN-E339860+ PGS (49376 49391,49600 50099) SGN-E354502+ PGS (49376 49391,49600 50099) SGN-E355273+ 3-phase translation of AGS-1 (+strand): . . . . . . 48648 GACAATGGTTCTCCCTCGGAAACAATTGAAGTACCAATGAACAGCTGCACTATCCAATTT D N G S P S E T I E V P M N S C T I Q F T M V L P R K Q L K Y Q - T A A L S N L Q W F S L G N N - S T N E Q L H Y P I . . . . . . 48708 GGTTGTGAAGGTCAATCAACAGAGTGCATAGATCCAGTGGGGAATTCCAGCATGGAGCTG G C E G Q S T E C I D P V G N S S M E L V V K V N Q Q S A - I Q W G I P A W S - W L - R S I N R V H R S S G E F Q H G A . . . . . . 48768 ACATTTCATCTTTGTTTAACTGATGAACGGGGTACTAACTGCAGGCCCGTTGCAAAAGAT T F H L C L T D E R G T N C R P V A K D H F I F V - L M N G V L T A G P L Q K I D I S S L F N - - T G Y - L Q A R C K R . . . . . . 48828 ACGGTGATTGAACCAGTTAGAATGCAAAAGGTTATATTGGATTGGACTGAGAAGGAATAT T V I E P V R M Q K V I L D W T E K E Y R - L N Q L E C K R L Y W I G L R R N M Y G D - T S - N A K G Y I G L D - E G I . . . . . . 48888 GAGCTATATGATGCGAGCTACCTCAAAGACCTTCCAGAGGTTCACAAAAGTGGACTTACA E L Y D A S Y L K D L P E V H K S G L T S Y M M R A T S K T F Q R F T K V D L Q - A I - C E L P Q R P S R G S Q K W T Y . . . . . . 48948 GTGAAGAAAACCAAGCAAGAAGCTATATCCTTATTTTCGTGTTTGGAGGCCTTCCTAAAG V K K T K Q E A I S L F S C L E A F L K - R K P S K K L Y P Y F R V W R P S - R S E E N Q A R S Y I L I F V F G G L P K . . . : . . . 49008 GAGGAACCTTTAGGACCAGATGATATGTG : GTACTGTCCTCGCTGCAAGGAGCATAGACAA E E P L G P D D M W : Y C P R C K E H R Q R N L - D Q M I C : G T V L A A R S I D K G G T F R T R - Y V : V L S S L Q G A - T . . . . . . 49146 GCCTCCAAGAAGTTAGATCTATGGAGATTACCGGACATACTTGTTTTCCACTTAAAGCGG A S K K L D L W R L P D I L V F H L K R P P R S - I Y G D Y R T Y L F S T - S G S L Q E V R S M E I T G H T C F P L K A . . . . . . 49206 TTCTCTTATAGCCGATGGCTGAAGAACAAGCTTGATACGTTTGTGAATTTTCCCATACAT F S Y S R W L K N K L D T F V N F P I H S L I A D G - R T S L I R L - I F P Y I V L L - P M A E E Q A - Y V C E F S H T . . . . . . 49266 AATCTGGATTTAAGCAAGTATGTGAAAAGTACGGATTTATCTGAGAGCTCCCATGTGTAT N L D L S K Y V K S T D L S E S S H V Y I W I - A S M - K V R I Y L R A P M C M - S G F K Q V C E K Y G F I - E L P C V . . . . . . 49326 GAGCTATATGCAATAAGCAACCATTATGGTGGACTAGGTGGTGGGCATTACACAGCTTAC E L Y A I S N H Y G G L G G G H Y T A Y S Y M Q - A T I M V D - V V G I T Q L T - A I C N K Q P L W W T R W W A L H S L . : . . . . . 49386 TGTAAG : TTGATTGATGACGACAGATGGTATCATTTTGATGATTCCCATGTTTCACCTGTT C K : L I D D D R W Y H F D D S H V S P V V S : - L M T T D G I I L M I P M F H L L L - : V D - - R Q M V S F - - F P C F T C . . . . . . 49654 GCTGAATCGGATATCAAAACATCAGCTGCCTACGTGTTGTTCTATCGAAGAGTTAAAGCT A E S D I K T S A A Y V L F Y R R V K A L N R I S K H Q L P T C C S I E E L K L C - I G Y Q N I S C L R V V L S K S - S . . . . . . 49714 CAACAAGATGGAGTTGTGGGAGGGTCCTATCAGTGCCATAGAAGCTCTTGAAAATGCTCG Q Q D G V V G G S Y Q C H R S S - K C S N K M E L W E G P I S A I E A L E N A R S T R W S C G R V L S V P - K L L K M L . . . . . . 49774 ACTGGTATCTCTTATCCCCACTTGATAAGGTCTGAATTCTTGGCTGTCCGGCAGGGGGCT T G I S Y P H L I R S E F L A V R Q G A L V S L I P T - - G L N S W L S G R G L D W Y L L S P L D K V - I L G C P A G G . . . . . . 49834 AACGTGGTTGGGGCTCATCTTATCCCTAGGTAAATTAGAAGTAGGTGCTCTATCAGTAAG N V V G A H L I P R - I R S R C S I S K T W L G L I L S L G K L E V G A L S V R - R G W G S S Y P - V N - K - V L Y Q - . . . . . . 49894 AGGCGCACCAAGAGGAAAACAGAAATTGGATGAGGCTCTAGTGTCTTTTTTTAAGAGAAA R R T K R K T E I G - G S S V F F - E K G A P R G K Q K L D E A L V S F F K R N E A H Q E E N R N W M R L - C L F L R E . . . . . . 49954 TTTTGTAAGTCTTGGGTATCCGTATTAGGCATTATACTCTTGTAGAGTAGTAGTGTTCTT F C K S W V S V L G I I L L - S S S V L F V S L G Y P Y - A L Y S C R V V V F L I L - V L G I R I R H Y T L V E - - C S . . . . . . 50014 ATCATTTTTTAGTGAAGAAGTTGTACTCAAGGACCAGGCCTTCTTTTTTTAAATCTAATT I I F - - R S C T Q G P G L L F L N L I S F F S E E V V L K D Q A F F F - I - L Y H F L V K K L Y S R T R P S F F K S N . . . 50074 ACATATAGCAGCATGAGAGTTTGATG T Y S S M R V - H I A A - E F D Y I - Q H E S L M Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-10_AGS-1_PPS_1 (48648 49036,49115 49391,49600 49764) (frame '1'; 828 bp, 276 residues) 1 DNGSPSETIE VPMNSCTIQF GCEGQSTECI DPVGNSSMEL TFHLCLTDER GTNCRPVAKD 61 TVIEPVRMQK VILDWTEKEY ELYDASYLKD LPEVHKSGLT VKKTKQEAIS LFSCLEAFLK 121 EEPLGPDDMW YCPRCKEHRQ ASKKLDLWRL PDILVFHLKR FSYSRWLKNK LDTFVNFPIH 181 NLDLSKYVKS TDLSESSHVY ELYAISNHYG GLGGGHYTAY CKLIDDDRWY HFDDSHVSPV 241 AESDIKTSAA YVLFYRRVKA QQDGVVGGSY QCHRSS- PGL 11 (- strand): 53926 51093 AGS-1 (51753 51093) SCR (e 0.996) Exon 1 51753 51093 ( 661 n); score: 0.996 PGS (51508 51093) SGN-E271757+ PGS (51753 51207) SGN-E298282+ 3-phase translation of AGS-1 (-strand): . . . . . . 51753 TACTTTTAGCACTAAGATTGTTGATGGTATTTTTATAGTAAAGAGAAGATAAAAAAAAAA Y F - H - D C - W Y F Y S K E K I K K K T F S T K I V D G I F I V K R R - K K K L L A L R L L M V F L - - R E D K K K . . . . . . 51693 AGCAGGCAGGCGCTACGTTACTTATAACCACCACCACTCGGCGGCACTTTAGTTGCTTTT S R Q A L R Y L - P P P L G G T L V A F A G R R Y V T Y N H H H S A A L - L L L K Q A G A T L L I T T T T R R H F S C F . . . . . . 51633 ACTCTGTTCTTTCTCCTTTAGCTCCTTCCTTCCTTGAGTCATTTGATGATGGAATCCAAT T L F F L L - L L P S L S H L M M E S N L C S F S F S S F L P - V I - - W N P I Y S V L S P L A P S F L E S F D D G I Q . . . . . . 51573 CCCAATCCCATCTCCTCTTCTCTTCTCCTTTTTCTGCTGTTTTTTACTCCAACTATGGTG P N P I S S S L L L F L L F F T P T M V P I P S P L L F S F F C C F L L Q L W W S Q S H L L F S S P F S A V F Y S N Y G . . . . . . 51513 GCTCCTCTAGGTATCAACTACGGGCAAATTGCCAACAATCTGCCCTTACCGGAAAACGTG A P L G I N Y G Q I A N N L P L P E N V L L - V S T T G K L P T I C P Y R K T W G S S R Y Q L R A N C Q Q S A L T G K R . . . . . . 51453 GTACCATTAGTCAAATCCATCGGAGCTACCAGAATCAAGCTCTATGATGCTGACCCACAT V P L V K S I G A T R I K L Y D A D P H Y H - S N P S E L P E S S S M M L T H M G T I S Q I H R S Y Q N Q A L - C - P T . . . . . . 51393 GTCCTCAAAGCCTTTGCTAACACCGGCGTTGAGTTCATCGTCAGTCTTGGCAATGAGTAC V L K A F A N T G V E F I V S L G N E Y S S K P L L T P A L S S S S V L A M S T C P Q S L C - H R R - V H R Q S W Q - V . . . . . . 51333 CTTGCCAAGATGAAAGATCCTTCTAAAGCTCAATCATGGGTTAAAAATAATGTCCAACCT L A K M K D P S K A Q S W V K N N V Q P L P R - K I L L K L N H G L K I M S N L P C Q D E R S F - S S I M G - K - C P T . . . . . . 51273 TACTTACCTGCTACTAAAATCACCTGCATCGCTGTCGGTAATGAAGTTCTCACCTTTAAC Y L P A T K I T C I A V G N E V L T F N T Y L L L K S P A S L S V M K F S P L T L L T C Y - N H L H R C R - - S S H L - . . . . . . 51213 GATACCATCCTCACCGACAACCTCCTCCCTGCAATGCAAAGTGTCCACACTGCTCTTGTT D T I L T D N L L P A M Q S V H T A L V I P S S P T T S S L Q C K V S T L L L L R Y H P H R Q P P P C N A K C P H C S C . . . . . . 51153 AATCTCAAATTGGACAAGCAAGTCACTGTCACCACCGCACATTCTCTTGCTATTCTACAA N L K L D K Q V T V T T A H S L A I L Q I S N W T S K S L S P P H I L L L F Y K - S Q I G Q A S H C H H R T F S C Y S T . 51093 A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-11_AGS-1_PPS_1 (51612 51094) (frame '1'; 519 bp, 173 residues) 1 LLPSLSHLMM ESNPNPISSS LLLFLLFFTP TMVAPLGINY GQIANNLPLP ENVVPLVKSI 61 GATRIKLYDA DPHVLKAFAN TGVEFIVSLG NEYLAKMKDP SKAQSWVKNN VQPYLPATKI 121 TCIAVGNEVL TFNDTILTDN LLPAMQSVHT ALVNLKLDKQ VTVTTAHSLA ILQ 3-phase translation of AGS-1 (+strand): . . . . . . 51093 TTTGTAGAATAGCAAGAGAATGTGCGGTGGTGACAGTGACTTGCTTGTCCAATTTGAGAT F V E - Q E N V R W - Q - L A C P I - D L - N S K R M C G G D S D L L V Q F E I C R I A R E C A V V T V T C L S N L R . . . . . . 51153 TAACAAGAGCAGTGTGGACACTTTGCATTGCAGGGAGGAGGTTGTCGGTGAGGATGGTAT - Q E Q C G H F A L Q G G G C R - G W Y N K S S V D T L H C R E E V V G E D G I L T R A V W T L C I A G R R L S V R M V . . . . . . 51213 CGTTAAAGGTGAGAACTTCATTACCGACAGCGATGCAGGTGATTTTAGTAGCAGGTAAGT R - R - E L H Y R Q R C R - F - - Q V S V K G E N F I T D S D A G D F S S R - V S L K V R T S L P T A M Q V I L V A G K . . . . . . 51273 AAGGTTGGACATTATTTTTAACCCATGATTGAGCTTTAGAAGGATCTTTCATCTTGGCAA K V G H Y F - P M I E L - K D L S S W Q R L D I I F N P - L S F R R I F H L G K - G W T L F L T H D - A L E G S F I L A . . . . . . 51333 GGTACTCATTGCCAAGACTGACGATGAACTCAACGCCGGTGTTAGCAAAGGCTTTGAGGA G T H C Q D - R - T Q R R C - Q R L - G V L I A K T D D E L N A G V S K G F E D R Y S L P R L T M N S T P V L A K A L R . . . . . . 51393 CATGTGGGTCAGCATCATAGAGCTTGATTCTGGTAGCTCCGATGGATTTGACTAATGGTA H V G Q H H R A - F W - L R W I - L M V M W V S I I E L D S G S S D G F D - W Y T C G S A S - S L I L V A P M D L T N G . . . . . . 51453 CCACGTTTTCCGGTAAGGGCAGATTGTTGGCAATTTGCCCGTAGTTGATACCTAGAGGAG P R F P V R A D C W Q F A R S - Y L E E H V F R - G Q I V G N L P V V D T - R S T T F S G K G R L L A I C P - L I P R G . . . . . . 51513 CCACCATAGTTGGAGTAAAAAACAGCAGAAAAAGGAGAAGAGAAGAGGAGATGGGATTGG P P - L E - K T A E K G E E K R R W D W H H S W S K K Q Q K K E K R R G D G I G A T I V G V K N S R K R R R E E E M G L . . . . . . 51573 GATTGGATTCCATCATCAAATGACTCAAGGAAGGAAGGAGCTAAAGGAGAAAGAACAGAG D W I P S S N D S R K E G A K G E R T E I G F H H Q M T Q G R K E L K E K E Q S G L D S I I K - L K E G R S - R R K N R . . . . . . 51633 TAAAAGCAACTAAAGTGCCGCCGAGTGGTGGTGGTTATAAGTAACGTAGCGCCTGCCTGC - K Q L K C R R V V V V I S N V A P A C K S N - S A A E W W W L - V T - R L P A V K A T K V P P S G G G Y K - R S A C L . . . . . . 51693 TTTTTTTTTTTATCTTCTCTTTACTATAAAAATACCATCAACAATCTTAGTGCTAAAAGT F F F L S S L Y Y K N T I N N L S A K S F F F Y L L F T I K I P S T I L V L K V L F F F I F S L L - K Y H Q Q S - C - K . 51753 A Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (53926 53722,53626 53450,53360 53169,52997 52911,52826 52698,52611 52135,51715 51693) SCR (e 0.995 d 1.000 a 0.993,e 1.000 d 0.972 a 0.976,e 1.000 d 0.941 a 0.683,e 1.000 d 0.980 a 0.975,e 1.000 d 0.982 a 0.943,e 0.998 d 0.000 a 0.971,e 0.783) Exon 1 53926 53722 ( 205 n); score: 0.995 Intron 1 53721 53627 ( 95 n); Pd: 1.000 Pa: 0.993 Exon 2 53626 53450 ( 177 n); score: 1.000 Intron 2 53449 53361 ( 89 n); Pd: 0.972 Pa: 0.976 Exon 3 53360 53169 ( 192 n); score: 1.000 Intron 3 53168 52998 ( 171 n); Pd: 0.941 Pa: 0.683 Exon 4 52997 52911 ( 87 n); score: 1.000 Intron 4 52910 52827 ( 84 n); Pd: 0.980 Pa: 0.975 Exon 5 52826 52698 ( 129 n); score: 1.000 Intron 5 52697 52612 ( 86 n); Pd: 0.982 Pa: 0.943 Exon 6 52611 52135 ( 477 n); score: 0.998 Intron 6 52134 51716 ( 419 n); Pd: 0.000 Pa: 0.971 Exon 7 51715 51693 ( 23 n); score: 0.783 PGS (52499 52135,51715 51693) SGN-E217003- PGS (52942 52911,52826 52698,52611 52206) SGN-E539599+ PGS (52942 52911,52826 52698,52611 52206) SGN-E539597- PGS (52941 52911,52826 52698,52611 52222) SGN-E285142+ PGS (53493 53450,53360 53169,52997 52911,52826 52698,52611 52275) SGN-E553650+ PGS (52610 52290) SGN-E229472- PGS (52601 52290) SGN-E229589- PGS (53757 53722,53626 53450,53360 53169,52997 52911,52826 52698,52611 52327) SGN-E553441- PGS (53465 53450,53360 53169,52997 52911,52826 52698,52611 52532) SGN-E253363+ PGS (53893 53722,53626 53450,53360 53219) SGN-E216528+ PGS (53926 53722,53626 53450,53360 53311) SGN-E271435+ 3-phase translation of AGS-2 (-strand): . . . . . . 53926 GAAGGCTGGGATATTAGAATCACATAGGGTGGTTACAGTAAGCCCATACTATGCCCAAGA E G W D I R I T - G G Y S K P I L C P R K A G I L E S H R V V T V S P Y Y A Q E R L G Y - N H I G W L Q - A H T M P K . . . . . . 53866 ACTTGTCTCTGCTGTTGACAAGGGTGTTGAATTGGACAGTGTCCTTCGTAAGACTTGCAT T C L C C - Q G C - I G Q C P S - D L H L V S A V D K G V E L D S V L R K T C I N L S L L L T R V L N W T V S F V R L A . . . . . . 53806 AACTGGGATTGTGAATGGCATGGATACACAAGAGTGGAACCCAGCGACTGACAAATACAC N W D C E W H G Y T R V E P S D - Q I H T G I V N G M D T Q E W N P A T D K Y T - L G L - M A W I H K S G T Q R L T N T . . . : . . . 53746 AGATGTCAAATACGATATAACCACT : GTCATGGACGCAAAACCTTTACTAAAGGAGGCTCT R C Q I R Y N H : C H G R K T F T K G G S D V K Y D I T T : V M D A K P L L K E A L Q M S N T I - P L : S W T Q N L Y - R R L . . . . . . 53591 TCAAGCAGCAGTTGGCTTGCCTGTTGACAAGAAGATCCCCTTGATTGGCTTCATCGGCAG S S S S W L A C - Q E D P L D W L H R Q Q A A V G L P V D K K I P L I G F I G R F K Q Q L A C L L T R R S P - L A S S A . . . . . . 53531 ACTTGAGGAGCAGAAAGGTTCAGATATTCTTGTTGCTGCAATTCACAAGTTTATCGAATT T - G A E R F R Y S C C C N S Q V Y R I L E E Q K G S D I L V A A I H K F I E L D L R S R K V Q I F L L L Q F T S L S N . . . : . . . 53471 GGATGTTCAAATTGTAGTCCTT : GGAACTGGCAAAAAGGAGTTTGAGCAGGAGATTGAACA G C S N C S P : W N W Q K G V - A G D - T D V Q I V V L : G T G K K E F E Q E I E Q W M F K L - S L : E L A K R S L S R R L N . . . . . . 53322 GCTCGAAGTGTTGTACCCTAATAAAGCTAAAGGAGTGGCAAAATTCAATGTCCCTTTGGC A R S V V P - - S - R S G K I Q C P F G L E V L Y P N K A K G V A K F N V P L A S S K C C T L I K L K E W Q N S M S L W . . . . . . 53262 TCACATGATCACTGCTGGTGCTGATTTTATGTTGGTCCCAAGCAGATTTGAACCTTGTGG S H D H C W C - F Y V G P K Q I - T L W H M I T A G A D F M L V P S R F E P C G L T - S L L V L I L C W S Q A D L N L V . . . . : . . 53202 TCTCATTCAGTTACATGCTATGCGATATGGAACA : GTGCCAATCTGTGCCTCAACTGGTGG S H S V T C Y A I W N : S A N L C L N W W L I Q L H A M R Y G T : V P I C A S T G G V S F S Y M L C D M E Q : C Q S V P Q L V . . . . . . 52971 ACTTGTTGACACTGTGAAAGAAGGCTATACTGGATTCCATATGGGAGCCTTCAATGTTGA T C - H C E R R L Y W I P Y G S L Q C - L V D T V K E G Y T G F H M G A F N V E D L L T L - K K A I L D S I W E P S M L . : . . . . . 52911 A : TGCGATGTTGTTGACCCAGATGATGTGCTTAAGATAGTAACAACAGTGTCAAGAGCTCT : M R C C - P R - C A - D S N N S V K S S : C D V V D P D D V L K I V T T V S R A L N : A M L L T Q M M C L R - - Q Q C Q E L . . . . . . 52767 TGCAGTCTATGGCACCCTTGCGTTTGCTGAGATGATAAAAAATTGCATGTCAGAGGAGCT C S L W H P C V C - D D K K L H V R G A A V Y G T L A F A E M I K N C M S E E L L Q S M A P L R L L R - - K I A C Q R S . : . . . . . 52707 CTCTTGGAAG : GAACCTGCCAAGAAATGGGAGACGTTGCTATTGGGCTTAGGAGCTTCTGG L L E : G T C Q E M G D V A I G L R S F W S W K : E P A K K W E T L L L G L G A S G S L G R : N L P R N G R R C Y W A - E L L . . . . . . 52561 CAGTGAACCCGGTGTCGAAGGGGAAGAAATCGCTCCACTTGCCAAGGAAAATGTAGCCAC Q - T R C R R G R N R S T C Q G K C S H S E P G V E G E E I A P L A K E N V A T A V N P V S K G K K S L H L P R K M - P . . . . . . 52501 TCCCTAAATGAGCTTTGGTCTTATCCTTGTTTCAACAATAAGGTCATTAATTATGTAGAA S L N E L W S Y P C F N N K V I N Y V E P - M S F G L I L V S T I R S L I M - N L P K - A L V L S L F Q Q - G H - L C R . . . . . . 52441 CCCTAATATGGGGTCTCAGTCATCTATAAAATGAATGGTTTTTGCTGGGGAGCAGCAGGT P - Y G V S V I Y K M N G F C W G A A G P N M G S Q S S I K - M V F A G E Q Q V T L I W G L S H L - N E W F L L G S S R . . . . . . 52381 TAATGTTTTTGTAGGGAAGGGTCAATAGAAAATAGTTATTACTAATGTTTGCGACTAAAT - C F C R E G S I E N S Y Y - C L R L N N V F V G K G Q - K I V I T N V C D - M L M F L - G R V N R K - L L L M F A T K . . . . . . 52321 GCTTAGTAATGTTAGCATAAATAATACTAGTAGCTAATATGCGTGAATTTGTTTTACTTT A - - C - H K - Y - - L I C V N L F Y F L S N V S I N N T S S - Y A - I C F T F C L V M L A - I I L V A N M R E F V L L . . . . . . 52261 TTCTTGCATAATTATTTGCAGTACATATATATAAATTACCCAAGGAATCAATGTTTGTGG F L H N Y L Q Y I Y I N Y P R N Q C L W S C I I I C S T Y I - I T Q G I N V C G F L A - L F A V H I Y K L P K E S M F V . . . . . . 52201 CTCCGTCCTTTGATGAATACAGAGCTAGTGTGGCAAGTTATAAATTTTGTTTAAAAGAAG L R P L M N T E L V W Q V I N F V - K K S V L - - I Q S - C G K L - I L F K R S A P S F D E Y R A S V A S Y K F C L K E . : . . 52141 CAAACTA : TAAAGAGAAGATAAAAAAAAAAA Q T : I K R R - K K K K L : - R E D K K K A N Y : K E K I K K K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-11_AGS-2_PPS_1 (53925 53722,53626 53450,53360 53169,52997 52911,52826 52698,52611 52495) (frame '2'; 903 bp, 301 residues) 1 KAGILESHRV VTVSPYYAQE LVSAVDKGVE LDSVLRKTCI TGIVNGMDTQ EWNPATDKYT 61 DVKYDITTVM DAKPLLKEAL QAAVGLPVDK KIPLIGFIGR LEEQKGSDIL VAAIHKFIEL 121 DVQIVVLGTG KKEFEQEIEQ LEVLYPNKAK GVAKFNVPLA HMITAGADFM LVPSRFEPCG 181 LIQLHAMRYG TVPICASTGG LVDTVKEGYT GFHMGAFNVE CDVVDPDDVL KIVTTVSRAL 241 AVYGTLAFAE MIKNCMSEEL SWKEPAKKWE TLLLGLGASG SEPGVEGEEI APLAKENVAT 301 P- PGL 12 (- strand): 55365 54286 AGS-1 (55365 55031,54959 54879,54813 54715,54648 54559,54470 54407,54338 54286) SCR (e 1.000 d 1.000 a 0.974,e 1.000 d 1.000 a 1.000,e 1.000 d 0.985 a 0.973,e 1.000 d 0.915 a 0.989,e 1.000 d 0.824 a 0.531,e 0.953) Exon 1 55365 55031 ( 335 n); score: 1.000 Intron 1 55030 54960 ( 71 n); Pd: 1.000 Pa: 0.974 Exon 2 54959 54879 ( 81 n); score: 1.000 Intron 2 54878 54814 ( 65 n); Pd: 1.000 Pa: 1.000 Exon 3 54813 54715 ( 99 n); score: 1.000 Intron 3 54714 54649 ( 66 n); Pd: 0.985 Pa: 0.973 Exon 4 54648 54559 ( 90 n); score: 1.000 Intron 4 54558 54471 ( 88 n); Pd: 0.915 Pa: 0.989 Exon 5 54470 54407 ( 64 n); score: 1.000 Intron 5 54406 54339 ( 68 n); Pd: 0.824 Pa: 0.531 Exon 6 54338 54286 ( 53 n); score: 0.953 PGS (55365 55031,54959 54879,54813 54715,54648 54559,54470 54407,54338 54286) SGN-E344703+ PGS (55041 55031,54959 54879,54813 54715,54648 54576) SGN-E264326+ PGS (55350 55031,54959 54879,54813 54715,54648 54582) SGN-E334369+ 3-phase translation of AGS-1 (-strand): . . . . . . 55365 ATAGATTTCGACCACACATGGCAAGCATCACAGCTTCACACTTTGTGTCAAGAAGCTCAA I D F D H T W Q A S Q L H T L C Q E A Q - I S T T H G K H H S F T L C V K K L K R F R P H M A S I T A S H F V S R S S . . . . . . 55305 ATGTCCAAACTTCACTAGACACCAAATCAACCTTGTCACAGATAGGACTCAGGAACCATA M S K L H - T P N Q P C H R - D S G T I C P N F T R H Q I N L V T D R T Q E P Y N V Q T S L D T K S T L S Q I G L R N H . . . . . . 55245 CTCTGACACACAATGGGTTAAGGGCTGTTAACAAGCTTGATGGGCTCCAATCAAGAACTA L - H T M G - G L L T S L M G S N Q E L S D T Q W V K G C - Q A - W A P I K N - T L T H N G L R A V N K L D G L Q S R T . . . . . . 55185 ATACTAAGGTAACACCCAAGATGAGATCCACCAAGTCAGCTACCATTGTTTGTGGAAAGG I L R - H P R - D P P S Q L P L F V E R Y - G N T Q D E I H Q V S Y H C L W K G N T K V T P K M R S T K S A T I V C G K . . . . . . 55125 GAATGAACTTGATCTTTGTGGGTACTGAGGTTGGTCCTTGGAGCAAAACTGGTGGACTAG E - T - S L W V L R L V L G A K L V D - N E L D L C G Y - G W S L E Q N W W T R G M N L I F V G T E V G P W S K T G G L . . . . : . . 55065 GTGATGTTCTTGGTGGACTACCACCAGCCCTTGCA : GCCCGCGGACATCGGGTAATGACAA V M F L V D Y H Q P L Q : P A D I G - - Q - C S W W T T T S P C : S P R T S G N D N G D V L G G L P P A L A : A R G H R V M T . . . . . . : 54934 TATCCCCCCGTTATGACCAATACAAAGATGCTTGGGATACTAGCGTTGCCCTTGAG : GTCA Y P P V M T N T K M L G I L A L P L R : S I P P L - P I Q R C L G Y - R C P - : G Q I S P R Y D Q Y K D A W D T S V A L E : V . . . . . . 54809 AAGTTGGAGACAGCATTGAAATTGTTCGCTTCTTTCACTGCTATAAACGTGGGGTTGATC K L E T A L K L F A S F T A I N V G L I S W R Q H - N C S L L S L L - T W G - S K V G D S I E I V R F F H C Y K R G V D . . . . : . . 54749 GTGTTTTTGTTGACCACCCAATGTTCTTGGAGAAA : GTTTGGGGCAAAACTGGTTCAAAAA V F L L T T Q C S W R K : F G A K L V Q K C F C - P P N V L G E : S L G Q N W F K N R V F V D H P M F L E K : V W G K T G S K . . . . . . 54623 TCTACGGCCCCAAAGCTGGACTGGATTATCTGGACAATGAACTTAGGTTCAGCTTGTTGT S T A P K L D W I I W T M N L G S A C C L R P Q S W T G L S G Q - T - V Q L V V I Y G P K A G L D Y L D N E L R F S L L . : . . . . . 54563 GTCAA : GCAGCCCTAGAGGCACCTAGAGTTTTGAATTTGAACAGTAGCAACTACTTCTCAG V K : Q P - R H L E F - I - T V A T T S Q S : S S P R G T - S F E F E Q - Q L L L R C Q : A A L E A P R V L N L N S S N Y F S . : . . . . . 54415 GACCATATG : GAGAGGATGTTCTCTTCATTGCCAATGATTGGCACACAGCTCTAATTCCCT D H M : E R M F S S L P M I G T Q L - F P T I W : R G C S L H C Q - L A H S S N S L G P Y : G E D V L F I A N D W H T A L I P . 54287 GC C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-12_AGS-1_PPS_1 (55363 55031,54959 54879,54813 54715,54648 54559,54470 54407,54338 54286) (frame '0'; 720 bp, 240 residues) 1 RFRPHMASIT ASHFVSRSSN VQTSLDTKST LSQIGLRNHT LTHNGLRAVN KLDGLQSRTN 61 TKVTPKMRST KSATIVCGKG MNLIFVGTEV GPWSKTGGLG DVLGGLPPAL AARGHRVMTI 121 SPRYDQYKDA WDTSVALEVK VGDSIEIVRF FHCYKRGVDR VFVDHPMFLE KVWGKTGSKI 181 YGPKAGLDYL DNELRFSLLC QAALEAPRVL NLNSSNYFSG PYGEDVLFIA NDWHTALIPC PGL 13 (+ strand): 55699 56137 AGS-1 (55699 56137) SCR (e 1.000) Exon 1 55699 56137 ( 439 n); score: 1.000 PGS (55699 56137) SGN-E334525- 3-phase translation of AGS-1 (+strand): . . . . . . 55699 TGCTCTTCTCTTCTGTCTCCTAGTATATCTAAAACTAAACAACTCCTTGACAAATAATAT C S S L L S P S I S K T K Q L L D K - Y A L L F C L L V Y L K L N N S L T N N I L F S S V S - Y I - N - T T P - Q I I . . . . . . 55759 ATATAGAATTTTCTATTTGTAACGCCCATATTAAGATTGAGGTTTGTTATGGATTTCTCA I - N F L F V T P I L R L R F V M D F S Y R I F Y L - R P Y - D - G L L W I S H Y I E F S I C N A H I K I E V C Y G F L . . . . . . 55819 TTCTCTGAGCGTCCCTGTTACTTAAATAAGGGATCAGCACAACAAGTTTCCATGATAACA F S E R P C Y L N K G S A Q Q V S M I T S L S V P V T - I R D Q H N K F P - - Q I L - A S L L L K - G I S T T S F H D N . . . . . . 55879 AACAGGTTATATGCATAATTCTCTTATTTAAACATAACATTTATATTTGGGAAAACAAAT N R L Y A - F S Y L N I T F I F G K T N T G Y M H N S L I - T - H L Y L G K Q I K Q V I C I I L L F K H N I Y I W E N K . . . . . . 55939 ATTATTCTCATTCCTCTCTTCTATATTTATTTGAAGAACCCTTCATTTACCGGCTGGTGC I I L I P L F Y I Y L K N P S F T G W C L F S F L S S I F I - R T L H L P A G A Y Y S H S S L L Y L F E E P F I Y R L V . . . . . . 55999 ATTGGGGCGCAAGGATTAAGGTCAGCGCTTCCATGCAGAAGAAACACAAATATATATCCA I G A Q G L R S A L P C R R N T N I Y P L G R K D - G Q R F H A E E T Q I Y I Q H W G A R I K V S A S M Q K K H K Y I S . . . . . . 56059 AGGTTAATTAATTGCTGCTCACAACTATATATTCAGCCAACAACTATATAGTATATTAAA R L I N C C S Q L Y I Q P T T I - Y I K G - L I A A H N Y I F S Q Q L Y S I L N K V N - L L L T T I Y S A N N Y I V Y - . . 56119 TAGAATTGCATTGCAAACA - N C I A N R I A L Q T I E L H C K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-13_AGS-1_PPS_1 (55848 56069) (frame '0'; 219 bp, 73 residues) 1 GISTTSFHDN KQVICIILLF KHNIYIWENK YYSHSSLLYL FEEPFIYRLV HWGARIKVSA 61 SMQKKHKYIS KVN- >C08HBa0064M21.1+_PGL-13_AGS-1_PPS_2 (55897 56109) (frame '1'; 210 bp, 70 residues) 1 FSYLNITFIF GKTNIILIPL FYIYLKNPSF TGWCIGAQGL RSALPCRRNT NIYPRLINCC 61 SQLYIQPTTI - 3-phase translation of AGS-1 (-strand): . . . . . . 56137 TGTTTGCAATGCAATTCTATTTAATATACTATATAGTTGTTGGCTGAATATATAGTTGTG C L Q C N S I - Y T I - L L A E Y I V V V C N A I L F N I L Y S C W L N I - L - F A M Q F Y L I Y Y I V V G - I Y S C . . . . . . 56077 AGCAGCAATTAATTAACCTTGGATATATATTTGTGTTTCTTCTGCATGGAAGCGCTGACC S S N - L T L D I Y L C F F C M E A L T A A I N - P W I Y I C V S S A W K R - P E Q Q L I N L G Y I F V F L L H G S A D . . . . . . 56017 TTAATCCTTGCGCCCCAATGCACCAGCCGGTAAATGAAGGGTTCTTCAAATAAATATAGA L I L A P Q C T S R - M K G S S N K Y R - S L R P N A P A G K - R V L Q I N I E L N P C A P M H Q P V N E G F F K - I - . . . . . . 55957 AGAGAGGAATGAGAATAATATTTGTTTTCCCAAATATAAATGTTATGTTTAAATAAGAGA R E E - E - Y L F S Q I - M L C L N K R E R N E N N I C F P K Y K C Y V - I R E K R G M R I I F V F P N I N V M F K - E . . . . . . 55897 ATTATGCATATAACCTGTTTGTTATCATGGAAACTTGTTGTGCTGATCCCTTATTTAAGT I M H I T C L L S W K L V V L I P Y L S L C I - P V C Y H G N L L C - S L I - V N Y A Y N L F V I M E T C C A D P L F K . . . . . . 55837 AACAGGGACGCTCAGAGAATGAGAAATCCATAACAAACCTCAATCTTAATATGGGCGTTA N R D A Q R M R N P - Q T S I L I W A L T G T L R E - E I H N K P Q S - Y G R Y - Q G R S E N E K S I T N L N L N M G V . . . . . . 55777 CAAATAGAAAATTCTATATATATTATTTGTCAAGGAGTTGTTTAGTTTTAGATATACTAG Q I E N S I Y I I C Q G V V - F - I Y - K - K I L Y I L F V K E L F S F R Y T R T N R K F Y I Y Y L S R S C L V L D I L . . 55717 GAGACAGAAGAGAAGAGCA E T E E K S R Q K R R A G D R R E E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (- strand): 61728 56552 AGS-1 (61728 61114,59479 59320,59218 59042,58958 58875,57539 57458,57264 56552) SCR (e 0.992 d 1.000 a 0.854,e 1.000 d 0.976 a 0.987,e 1.000 d 0.869 a 0.568,e 1.000 d 0.979 a 0.998,e 1.000 d 0.983 a 0.999,e 1.000) Exon 1 61728 61114 ( 615 n); score: 0.992 Intron 1 61113 59480 (1634 n); Pd: 1.000 Pa: 0.854 Exon 2 59479 59320 ( 160 n); score: 1.000 Intron 2 59319 59219 ( 101 n); Pd: 0.976 Pa: 0.987 Exon 3 59218 59042 ( 177 n); score: 1.000 Intron 3 59041 58959 ( 83 n); Pd: 0.869 Pa: 0.568 Exon 4 58958 58875 ( 84 n); score: 1.000 Intron 4 58874 57540 (1335 n); Pd: 0.979 Pa: 0.998 Exon 5 57539 57458 ( 82 n); score: 1.000 Intron 5 57457 57265 ( 193 n); Pd: 0.983 Pa: 0.999 Exon 6 57264 56552 ( 713 n); score: 1.000 PGS (57254 56552) SGN-E393366- PGS (56946 56575) SGN-E216855- PGS (56935 56576) SGN-E223732- PGS (56942 56580) SGN-E224135- PGS (56879 56588) SGN-E215767- PGS (57539 57458,57264 56682) SGN-E376806+ PGS (57487 57458,57264 56710) SGN-E288015+ PGS (57245 56710) SGN-E287246+ PGS (57254 56911) SGN-E393117+ PGS (58917 58875,57539 57458,57264 56948) SGN-E277528+ PGS (57539 57458,57264 56998) SGN-E231069+ PGS (59365 59320,59218 59042,58958 58875,57539 57458,57264 57028) SGN-E238374+ PGS (59326 59320,59218 59042,58958 58875,57539 57458,57264 57062) SGN-E233406+ PGS (59443 59320,59218 59042,58958 58875,57539 57458,57264 57236) SGN-E202669+ PGS (61369 61114,59479 59320,59218 59081) SGN-E275964+ PGS (61373 61114,59479 59320,59218 59087) SGN-E276838+ PGS (61389 61114,59479 59320,59218 59092) SGN-E299372+ PGS (61389 61114,59479 59320,59218 59094) SGN-E276622+ PGS (61433 61114,59479 59320,59218 59098) SGN-E292510+ PGS (61375 61114,59479 59320,59218 59111) SGN-E201544+ PGS (61451 61114,59479 59320,59218 59136) SGN-E269100+ PGS (61522 61114,59479 59320,59218 59200) SGN-E296472+ PGS (61487 61114,59479 59320,59218 59200) SGN-E278755+ PGS (61458 61114,59479 59330) SGN-E291516+ PGS (61376 61114,59479 59330) SGN-E201731+ PGS (61488 61114,59479 59339) SGN-E287655+ PGS (61398 61114,59479 59345) SGN-E258278+ PGS (61530 61114,59479 59408) SGN-E315915+ PGS (61728 61114,59479 59423) SGN-E334325+ PGS (61530 61114,59479 59439) SGN-E303253+ PGS (61373 61114) SGN-E274700+ PGS (61387 61131) SGN-E329479+ PGS (61468 61132) SGN-E295351+ 3-phase translation of AGS-1 (-strand): . . . . . . 61728 AAGCACTTGGTCGAACATAAAAACTAAAATCCTGAGGAGCAAAAATGAAAGAGGGCCTAC K H L V E H K N - N P E E Q K - K R A Y S T W S N I K T K I L R S K N E R G P T A L G R T - K L K S - G A K M K E G L . . . . . . 61668 CAGCAATCGGCTAACACGTTTCTCTACCTCTACATCCTTATCCTCTTTTCCCTAAATCGA Q Q S A N T F L Y L Y I L I L F S L N R S N R L T R F S T S T S L S S F P - I D P A I G - H V S L P L H P Y P L F P K S . . . . . . 61608 TTCCTTTCCTTTTTTTTTTTTTTAGTAAAATTTTACTCTTTCTTTCCTGCTATCTATCTA F L S F F F F L V K F Y S F F P A I Y L S F P F F F F - - N F T L S F L L S I Y I P F L F F F F S K I L L F L S C Y L S . . . . . . 61548 TCTATCTTTAGGGTTGTCTTTATTTATCTTTATCTTTCTCTATCTTCTTCTTCTTCTTCT S I F R V V F I Y L Y L S L S S S S S S L S L G L S L F I F I F L Y L L L L L L I Y L - G C L Y L S L S F S I F F F F F . . . . . . 61488 TTTTTTTGAAACCCTCGACTCGTCGCCGTGTTCAAAGTTTATATTTACGATTGAATCGGG F F - N P R L V A V F K V Y I Y D - I G F F E T L D S S P C S K F I F T I E S G F F L K P S T R R R V Q S L Y L R L N R . . . . . . 61428 GGTTGCTTCTTCTTCTTTTTTTATTATGGGTTTGGTAGCGGCTTTGCTTGAGATTTTACA G C F F F F F Y Y G F G S G F A - D F T V A S S S F F I M G L V A A L L E I L Q G L L L L L F L L W V W - R L C L R F Y . . . . . . 61368 AAGACCAACTTTTGGGGAGGTAATATTAGAGCTGGGGATGTTTATGGCACCCATCTGGAT K T N F W G G N I R A G D V Y G T H L D R P T F G E V I L E L G M F M A P I W I K D Q L L G R - Y - S W G C L W H P S G . . . . . . 61308 TGCTGTTCTTGTTGGGGTCTTGGTTGGATGGTCATGGAAGCCCAATTGGGCCAATCTTGC C C S C W G L G W M V M E A Q L G Q S C A V L V G V L V G W S W K P N W A N L A L L F L L G S W L D G H G S P I G P I L . . . . . . 61248 CATTGATTCTGTTCCTACAACACATGTTCCTTCTCTCCAAAACTTGTCTTCTGGCTTTTC H - F C S Y N T C S F S P K L V F W L F I D S V P T T H V P S L Q N L S S G F S P L I L F L Q H M F L L S K T C L L A F . . . . . . 61188 AACTCTCAAATTGCAAATTCCCTCTTGGATCAAGGAAACTCACTCCCCACCCTCCATTTC N S Q I A N S L L D Q G N S L P T L H F T L K L Q I P S W I K E T H S P P S I S Q L S N C K F P L G S R K L T P H P P F . . : . . . . 61128 ATCCTCTACCTCCAG : TTCATTGCATCTGGAAGCCGAAAAATTGGTAGTAACCGATGCAGA I L Y L Q : F I A S G S R K I G S N R C R S S T S S : S L H L E A E K L V V T D A D H P L P P : V H C I W K P K N W - - P M Q . . . . . . 59434 CCTTCGTTACTTAGATGGATTAGTTGAAGAGAAAGATGGAGGACCTGCGTGGATTCAGAT P S L L R W I S - R E R W R T C V D S D L R Y L D G L V E E K D G G P A W I Q M T F V T - M D - L K R K M E D L R G F R . . . . . . : 59374 GATGGATCGTTCTACACCAAATATGTCCTATCAGGCTTGGCGTAGAGATCCCGAG : ACGGG D G S F Y T K Y V L S G L A - R S R : D G M D R S T P N M S Y Q A W R R D P E : T G - W I V L H Q I C P I R L G V E I P R : R . . . . . . 59213 ACCTCCACAATATCGTAGCAGAACTGTATATGAGGATGCCACTCCAGAAATGTTGAGGGA T S T I S - Q N C I - G C H S R N V E G P P Q Y R S R T V Y E D A T P E M L R D D L H N I V A E L Y M R M P L Q K C - G . . . . . . 59153 TTTCTTCTGGGAAGATGAATTTCGATTGAAGTGGGATGACATGCTTATACATGCTGAAAC F L L G R - I S I E V G - H A Y T C - N F F W E D E F R L K W D D M L I H A E T I S S G K M N F D - S G M T C L Y M L K . . . . . . : 59093 ATTAGAAGAGTGTCCTACCACTGGAACCATGGTGGTTCAGTGGGTGCGTAAG : TTTCCCTT I R R V S Y H W N H G G S V G A - : V S L L E E C P T T G T M V V Q W V R K : F P F H - K S V L P L E P W W F S G C V S : F P . . . . . . 58950 CTTTTGCAGTGATAGAGAGTACATTATAGGCCGTCGAATTTGGGAGTCAGGGCGGACATA L L Q - - R V H Y R P S N L G V R A D I F C S D R E Y I I G R R I W E S G R T Y S F A V I E S T L - A V E F G S Q G G H . . : . . . . 58890 CTACTGCGTCACTAAG : GGTGTACCATGCCCTTCTGTGCCCCGTCGCAACAAACCAAGACG L L R H - : G C T M P F C A P S Q Q T K T Y C V T K : G V P C P S V P R R N K P R R T T A S L R : V Y H A L L C P V A T N Q D . . . . : . . 57495 TGTTGATCTCTACTATTCAAGTTGGTTCATCCGCGCAG : CTGAATCCAAGAGAGATGGTCG C - S L L F K L V H P R S : - I Q E R W S V D L Y Y S S W F I R A : A E S K R D G R V L I S T I Q V G S S A Q : L N P R E M V . . . . . . 57242 GATGACTGCCTGTGAAGTATTACTCTTTCATTATGAAGACATGGGTATACCTTGGGAAAT D D C L - S I T L S L - R H G Y T L G N M T A C E V L L F H Y E D M G I P W E I G - L P V K Y Y S F I M K T W V Y L G K . . . . . . 57182 TGCCAAACTCGGGGTAAGGCAAGGTATGTGGGGAGCTGTGAGGAAGATTGACCCTGGTTT C Q T R G K A R Y V G S C E E D - P W F A K L G V R Q G M W G A V R K I D P G L L P N S G - G K V C G E L - G R L T L V . . . . . . 57122 ACGTGCATACCAGAGACATAGAGCGTCTGGAGACCCAATTTCACGATGTGCTTTCATGGC T C I P E T - S V W R P N F T M C F H G R A Y Q R H R A S G D P I S R C A F M A Y V H T R D I E R L E T Q F H D V L S W . . . . . . 57062 GCAAGTCAACACCAAAGTTGATATTGAGAATCTCAGATCAATGGGGAGCGAAACCTATCT A S Q H Q S - Y - E S Q I N G E R N L S Q V N T K V D I E N L R S M G S E T Y L R K S T P K L I L R I S D Q W G A K P I . . . . . . 57002 TTCTGAGATTGAGCGTGAGGATTCACCTGAGAAGCCTGCAGGGAGGATCATACCGCGGTT F - D - A - G F T - E A C R E D H T A V S E I E R E D S P E K P A G R I I P R F F L R L S V R I H L R S L Q G G S Y R G . . . . . . 56942 CTTAGTTGTTGGTGGGGCAATTGCCCTTGCTTGTAGTCTTGATCGTGGACTCCTGACAAA L S C W W G N C P C L - S - S W T P D K L V V G G A I A L A C S L D R G L L T K S - L L V G Q L P L L V V L I V D S - Q . . . . . . 56882 AGCGGTTATATTTGGAGTTGCTAGAAGGTTTGCAGGGATTGGGAAAAGGTTGTGAAACTG S G Y I W S C - K V C R D W E K V V K L A V I F G V A R R F A G I G K R L - N C K R L Y L E L L E G L Q G L G K G C E T . . . . . . 56822 CTCTAGTATGGGTCGAGGCATTTTTATATACATCATTTGATCGATAAGAGAACATACTTT L - Y G S R H F Y I H H L I D K R T Y F S S M G R G I F I Y I I - S I R E H T L A L V W V E A F L Y T S F D R - E N I L . . . . . . 56762 GGCAGCAAGGTAGCCACTGTGAAGAGCTAGGTCCTCCTCCATAGTTATATTATGTTGTCT G S K V A T V K S - V L L H S Y I M L S A A R - P L - R A R S S S I V I L C C L W Q Q G S H C E E L G P P P - L Y Y V V . . . . . . 56702 TCTGTCAAGCTGCAAGGCAGCCACTGTTCAGGAGAATCCAGATTATACTATACATGTATT S V K L Q G S H C S G E S R L Y Y T C I L S S C K A A T V Q E N P D Y T I H V F F C Q A A R Q P L F R R I Q I I L Y M Y . . . . . . 56642 CGTTGAAATTCTGGTGTCACTGAATATGTCATGCTTCAAATAAAAAGCAAAGCTGATTCT R - N S G V T E Y V M L Q I K S K A D S V E I L V S L N M S C F K - K A K L I L S L K F W C H - I C H A S N K K Q S - F . . . . 56582 TTTATGAACTTTTTGTCCGTCTTTACTTTAA F M N F L S V F T L L - T F C P S L L - F Y E L F V R L Y F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-14_AGS-1_PPS_1 (61580 61114,59479 59320,59218 59042,58958 58875,57539 57458,57264 56828) (frame '2'; 1404 bp, 468 residues) 1 NFTLSFLLSI YLSLGLSLFI FIFLYLLLLL LFFETLDSSP CSKFIFTIES GVASSSFFIM 61 GLVAALLEIL QRPTFGEVIL ELGMFMAPIW IAVLVGVLVG WSWKPNWANL AIDSVPTTHV 121 PSLQNLSSGF STLKLQIPSW IKETHSPPSI SSSTSSSLHL EAEKLVVTDA DLRYLDGLVE 181 EKDGGPAWIQ MMDRSTPNMS YQAWRRDPET GPPQYRSRTV YEDATPEMLR DFFWEDEFRL 241 KWDDMLIHAE TLEECPTTGT MVVQWVRKFP FFCSDREYII GRRIWESGRT YYCVTKGVPC 301 PSVPRRNKPR RVDLYYSSWF IRAAESKRDG RMTACEVLLF HYEDMGIPWE IAKLGVRQGM 361 WGAVRKIDPG LRAYQRHRAS GDPISRCAFM AQVNTKVDIE NLRSMGSETY LSEIEREDSP 421 EKPAGRIIPR FLVVGGAIAL ACSLDRGLLT KAVIFGVARR FAGIGKRL- AGS-2 (61285 60722) SCR (e 0.995) Exon 1 61285 60722 ( 564 n); score: 0.995 PGS (61285 60722) SGN-E332070+ 3-phase translation of AGS-2 (-strand): . . . . . . 61285 TTGGATGGTCATGGAAGCCCAATTGGGCCAATCTTGCCATTGATTCTGTTCCTACAACAC L D G H G S P I G P I L P L I L F L Q H W M V M E A Q L G Q S C H - F C S Y N T G W S W K P N W A N L A I D S V P T T . . . . . . 61225 ATGTTCCTTCTCTCCAAAACTTGTCTTCTGGCTTTTCAACTCTCAAATTGCAAATTCCCT M F L L S K T C L L A F Q L S N C K F P C S F S P K L V F W L F N S Q I A N S L H V P S L Q N L S S G F S T L K L Q I P . . . . . . 61165 CTTGGATCAAGGAAACTCACTCCCCACCCTCCATTTCATCCTCTACCTCCAGGTTTCTTC L G S R K L T P H P P F H P L P P G F F L D Q G N S L P T L H F I L Y L Q V S S S W I K E T H S P P S I S S S T S R F L . . . . . . 61105 CAAAGTCTCTCTCTTTAATTTCTCATTTTCTGTATTTCTCCTTTACATACCCGATTTCTA Q S L S L - F L I F C I S P L H T R F L K V S L F N F S F S V F L L Y I P D F - P K S L S L I S H F L Y F S F T Y P I S . . . . . . 61045 AAACTAACTTTTAAAAATGCGATCCCAGTTGACTGATGGATTAAAAATTTGGCTAACTTT K L T F K N A I P V D - W I K N L A N F N - L L K M R S Q L T D G L K I W L T L K T N F - K C D P S - L M D - K F G - L . . . . . . 60985 ATTAAAGAAAATGAATTGTGTTGGTTTTAAAAATCTTTAGAAAAATGAATAGATATTAAT I K E N E L C W F - K S L E K - I D I N L K K M N C V G F K N L - K N E - I L I Y - R K - I V L V L K I F R K M N R Y - . . . . . . 60925 TTGTACTATCAAGTAATGAAAAATTAAAAGTTCAAGCGTCTGGAAATGTTTTTAACTTAA L Y Y Q V M K N - K F K R L E M F L T - C T I K - - K I K S S S V W K C F - L N F V L S S N E K L K V Q A S G N V F N L . . . . . . 60865 TAATAATCTATATCCAAGTTAAAGATTTGAACCAAATGGTTAGCTCAAATTCATTAACGT - - S I S K L K I - T K W L A Q I H - R N N L Y P S - R F E P N G - L K F I N V I I I Y I Q V K D L N Q M V S S N S L T . . . . . . 60805 GAATTAAAGCTTTTTAATAACTATGAAACAGCTGGTTCTTAAGTTATTCTACAAGCTTAA E L K L F N N Y E T A G S - V I L Q A - N - S F L I T M K Q L V L K L F Y K L K - I K A F - - L - N S W F L S Y S T S L . . . 60745 GTCTGCCTTAACTAAATTGGGCTT V C L N - I G L S A L T K L G S L P - L N W A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-14_AGS-2_PPS_1 (61283 61032) (frame '0'; 249 bp, 83 residues) 1 GWSWKPNWAN LAIDSVPTTH VPSLQNLSSG FSTLKLQIPS WIKETHSPPS ISSSTSRFLP 61 KSLSLISHFL YFSFTYPISK TNF- 3-phase translation of AGS-2 (+strand): . . . . . . 60722 AAGCCCAATTTAGTTAAGGCAGACTTAAGCTTGTAGAATAACTTAAGAACCAGCTGTTTC K P N L V K A D L S L - N N L R T S C F S P I - L R Q T - A C R I T - E P A V S A Q F S - G R L K L V E - L K N Q L F . . . . . . 60782 ATAGTTATTAAAAAGCTTTAATTCACGTTAATGAATTTGAGCTAACCATTTGGTTCAAAT I V I K K L - F T L M N L S - P F G S N - L L K S F N S R - - I - A N H L V Q I H S Y - K A L I H V N E F E L T I W F K . . . . . . 60842 CTTTAACTTGGATATAGATTATTATTAAGTTAAAAACATTTCCAGACGCTTGAACTTTTA L - L G Y R L L L S - K H F Q T L E L L F N L D I D Y Y - V K N I S R R L N F - S L T W I - I I I K L K T F P D A - T F . . . . . . 60902 ATTTTTCATTACTTGATAGTACAAATTAATATCTATTCATTTTTCTAAAGATTTTTAAAA I F H Y L I V Q I N I Y S F F - R F L K F F I T - - Y K L I S I H F S K D F - N N F S L L D S T N - Y L F I F L K I F K . . . . . . 60962 CCAACACAATTCATTTTCTTTAATAAAGTTAGCCAAATTTTTAATCCATCAGTCAACTGG P T Q F I F F N K V S Q I F N P S V N W Q H N S F S L I K L A K F L I H Q S T G T N T I H F L - - S - P N F - S I S Q L . . . . . . 61022 GATCGCATTTTTAAAAGTTAGTTTTAGAAATCGGGTATGTAAAGGAGAAATACAGAAAAT D R I F K S - F - K S G M - R R N T E N I A F L K V S F R N R V C K G E I Q K M G S H F - K L V L E I G Y V K E K Y R K . . . . . . 61082 GAGAAATTAAAGAGAGAGACTTTGGAAGAAACCTGGAGGTAGAGGATGAAATGGAGGGTG E K L K R E T L E E T W R - R M K W R V R N - R E R L W K K P G G R G - N G G W - E I K E R D F G R N L E V E D E M E G . . . . . . 61142 GGGAGTGAGTTTCCTTGATCCAAGAGGGAATTTGCAATTTGAGAGTTGAAAAGCCAGAAG G S E F P - S K R E F A I - E L K S Q K G V S F L D P R G N L Q F E S - K A R R G E - V S L I Q E G I C N L R V E K P E . . . . . . 61202 ACAAGTTTTGGAGAGAAGGAACATGTGTTGTAGGAACAGAATCAATGGCAAGATTGGCCC T S F G E K E H V L - E Q N Q W Q D W P Q V L E R R N M C C R N R I N G K I G P D K F W R E G T C V V G T E S M A R L A . . . 61262 AATTGGGCTTCCATGACCATCCAA N W A S M T I Q I G L P - P S Q L G F H D H P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 64175 68236 AGS-1 (64175 64456,64532 64704,64779 64842,66325 66695) SCR (e 1.000 d 0.998 a 0.993,e 1.000 d 0.997 a 0.816,e 1.000 d 0.949 a 0.999,e 0.997) Exon 1 64175 64456 ( 282 n); score: 1.000 Intron 1 64457 64531 ( 75 n); Pd: 0.998 Pa: 0.993 Exon 2 64532 64704 ( 173 n); score: 1.000 Intron 2 64705 64778 ( 74 n); Pd: 0.997 Pa: 0.816 Exon 3 64779 64842 ( 64 n); score: 1.000 Intron 3 64843 66324 (1482 n); Pd: 0.949 Pa: 0.999 Exon 4 66325 66695 ( 371 n); score: 0.997 PGS (64175 64456,64532 64704,64779 64842,66325 66548) SGN-E345039+ PGS (64190 64456,64532 64704,64779 64788) SGN-E205315+ PGS (64196 64456,64532 64704,64779 64842,66325 66478) SGN-E297759+ PGS (64224 64456,64532 64704,64779 64842,66325 66381) SGN-E285080+ PGS (64225 64456,64532 64704,64779 64842,66325 66444) SGN-E288804+ PGS (64228 64456,64532 64704,64779 64842,66325 66402) SGN-E287079+ PGS (64228 64456,64532 64694) SGN-E284576+ PGS (64240 64456,64532 64704,64779 64842,66325 66493) SGN-E340144+ PGS (64248 64456,64532 64704,64779 64842,66325 66384) SGN-E254656+ PGS (64257 64456,64532 64704,64779 64842,66325 66624) SGN-E347053+ PGS (64259 64456,64532 64704,64779 64797) SGN-E289560+ PGS (64396 64456,64532 64704,64779 64842,66325 66695) SGN-E347291+ PGS (66325 66630) SGN-E371534+ PGS (66325 66630) SGN-E282797+ PGS (66325 66630) SGN-E371533- 3-phase translation of AGS-1 (+strand): . . . . . . 64175 GAGATAGGAGAGGGTGCCGAGTTTTATCCACTTCCTCTCTCGTTCGTCTTTCTTCTTCTA E I G E G A E F Y P L P L S F V F L L L R - E R V P S F I H F L S R S S F F F Y D R R G C R V L S T S S L V R L S S S . . . . . . 64235 TCAGAAAGAAAAGAAAAATGGCGTCTTTATCGAGTTGTAATCATCCAGGGAAACTCTGTT S E R K E K W R L Y R V V I I Q G N S V Q K E K K N G V F I E L - S S R E T L F I R K K R K M A S L S S C N H P G K L C . . . . . . 64295 CCTCGTTTTCACCTTCCTCCCTTAAGTTGTCATGGGTCCAACGCGTGTCGGTTCAGTTCA P R F H L P P L S C H G S N A C R F S S L V F T F L P - V V M G P T R V G S V H S S F S P S S L K L S W V Q R V S V Q F . . . . . . 64355 TTCACACCCAAAACCACACTTGTTCCCTTCCTTATGCTCCAAGGGCTCTCACTGTCATTT F T P K T T L V P F L M L Q G L S L S F S H P K P H L F P S L C S K G S H C H F I H T Q N H T C S L P Y A P R A L T V I . . . . . : . 64415 CCATGGCCCCCCCTAAGCCCGGTGGTGGTAAAGCGAAGAAAG : TCACTGGTATTATAAAGT P W P P L S P V V V K R R K : S L V L - S H G P P - A R W W - S E E S : H W Y Y K V S M A P P K P G G G K A K K : V T G I I K . . . . . . 64550 TAGCTCTCGAGGCAGGGAAGGCAACCCCAGCTCCACCCGTGGGGCCGGCCTTGGGTTCCA - L S R Q G R Q P Q L H P W G R P W V P S S R G R E G N P S S T R G A G L G F Q L A L E A G K A T P A P P V G P A L G S . . . . . . 64610 AAGGTGTTAACATCATGGCATTCTGTAAGGATTACAATGCCAGAACTGCTGACAAAGCTG K V L T S W H S V R I T M P E L L T K L R C - H H G I L - G L Q C Q N C - Q S W K G V N I M A F C K D Y N A R T A D K A . . . . : . . 64670 GTTATGTTATTCCTGTGGAAATCACCGTCTATGAT : GATAGAAGCTTCACTTTTATCTTGA V M L F L W K S P S M M : I E A S L L S - L C Y S C G N H R L - : - - K L H F Y L E G Y V I P V E I T V Y D : D R S F T F I L . . . . : . . 64804 AGACCCCACCTGCTTCTGTTTTGCTGCTCAAGGCTGCAG : GAGTGGAAAAGGGCTCGAAGG R P H L L L F C C S R L Q : E W K R A R R D P T C F C F A A Q G C R : S G K G L E G K T P P A S V L L L K A A : G V E K G S K . . . . . . 66346 ACCCACAGAGGGAGAAAGTGGGGAAAATAACTATTGATCAATTGAAGGTAATTGCTCAAG T H R G R K W G K - L L I N - R - L L K P T E G E S G E N N Y - S I E G N C S R D P Q R E K V G K I T I D Q L K V I A Q . . . . . . 66406 AGAAGTTGCCGGATCTTAATTGTTCTACTATTGAATCTGCAATGAGGATAATAGCTGGCA R S C R I L I V L L L N L Q - G - - L A E V A G S - L F Y Y - I C N E D N S W H E K L P D L N C S T I E S A M R I I A G . . . . . . 66466 CTGCAGCAAATATGGGAATTGACATTGACCCTCCGATTCTTGAACCTAAAAAGAAAGAAC L Q Q I W E L T L T L R F L N L K R K N C S K Y G N - H - P S D S - T - K E R T T A A N M G I D I D P P I L E P K K K E . . . . . . 66526 TTGTGTACTAGTTATGCCTTTTCTATTCCCATGTAATGTATCCAAGTATTAGAAGCAAAA L C T S Y A F S I P M - C I Q V L E A K C V L V M P F L F P C N V S K Y - K Q K L V Y - L C L F Y S H V M Y P S I R S K . . . . . . 66586 AAGAATTGGAAGAGAAGTAGATTGACTTGAGATAACCTTTTATCCGTTTGTTTCAATTCT K N W K R S R L T - D N L L S V C F N S R I G R E V D - L E I T F Y P F V S I L K E L E E K - I D L R - P F I R L F Q F . . . . . 66646 TTGGACTCTTCATTCTTTAATTATGATGAATACACCATTCTCTAGTGCAA L D S S F F N Y D E Y T I L - C W T L H S L I M M N T P F S S A F G L F I L - L - - I H H S L V Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-15_AGS-1_PPS_1 (64177 64456,64532 64704,64779 64842,66325 66536) (frame '0'; 726 bp, 242 residues) 1 DRRGCRVLST SSLVRLSSSI RKKRKMASLS SCNHPGKLCS SFSPSSLKLS WVQRVSVQFI 61 HTQNHTCSLP YAPRALTVIS MAPPKPGGGK AKKVTGIIKL ALEAGKATPA PPVGPALGSK 121 GVNIMAFCKD YNARTADKAG YVIPVEITVY DDRSFTFILK TPPASVLLLK AAGVEKGSKD 181 PQREKVGKIT IDQLKVIAQE KLPDLNCSTI ESAMRIIAGT AANMGIDIDP PILEPKKKEL 241 VY- AGS-2 (64782 64842,66325 66601,66721 66742) SCR (e 1.000 d 0.949 a 0.999,e 1.000 d 0.000 a 0.852,e 0.500) Exon 1 64782 64842 ( 61 n); score: 1.000 Intron 1 64843 66324 (1482 n); Pd: 0.949 Pa: 0.999 Exon 2 66325 66601 ( 277 n); score: 1.000 Intron 2 66602 66720 ( 119 n); Pd: 0.000 Pa: 0.852 Exon 3 66721 66742 ( 22 n); score: 0.500 PGS (64782 64842,66325 66601,66721 66742) SGN-E552591+ 3-phase translation of AGS-2 (+strand): . . . . . . 64782 AGAAGCTTCACTTTTATCTTGAAGACCCCACCTGCTTCTGTTTTGCTGCTCAAGGCTGCA R S F T F I L K T P P A S V L L L K A A E A S L L S - R P H L L L F C C S R L Q K L H F Y L E D P T C F C F A A Q G C . : . . . . . 64842 G : GAGTGGAAAAGGGCTCGAAGGACCCACAGAGGGAGAAAGTGGGGAAAATAACTATTGAT : G V E K G S K D P Q R E K V G K I T I D : E W K R A R R T H R G R K W G K - L L I R : S G K G L E G P T E G E S G E N N Y - . . . . . . 66384 CAATTGAAGGTAATTGCTCAAGAGAAGTTGCCGGATCTTAATTGTTCTACTATTGAATCT Q L K V I A Q E K L P D L N C S T I E S N - R - L L K R S C R I L I V L L L N L S I E G N C S R E V A G S - L F Y Y - I . . . . . . 66444 GCAATGAGGATAATAGCTGGCACTGCAGCAAATATGGGAATTGACATTGACCCTCCGATT A M R I I A G T A A N M G I D I D P P I Q - G - - L A L Q Q I W E L T L T L R F C N E D N S W H C S K Y G N - H - P S D . . . . . . 66504 CTTGAACCTAAAAAGAAAGAACTTGTGTACTAGTTATGCCTTTTCTATTCCCATGTAATG L E P K K K E L V Y - L C L F Y S H V M L N L K R K N L C T S Y A F S I P M - C S - T - K E R T C V L V M P F L F P C N . . . . : . . 66564 TATCCAAGTATTAGAAGCAAAAAAGAATTGGAAGAGAA : GTGCCATAAATTGAAGAAGAAA Y P S I R S K K E L E E K : C H K L K K K I Q V L E A K K N W K R : S A I N - R R V S K Y - K Q K R I G R E : V P - I E E E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-15_AGS-2_PPS_1 (64782 64842,66325 66536) (frame '1'; 270 bp, 90 residues) 1 RSFTFILKTP PASVLLLKAA GVEKGSKDPQ REKVGKITID QLKVIAQEKL PDLNCSTIES 61 AMRIIAGTAA NMGIDIDPPI LEPKKKELVY - AGS-3 (65682 66447) SCR (e 0.991) Exon 1 65682 66447 ( 766 n); score: 0.991 PGS (65682 66447) SGN-E317365+ 3-phase translation of AGS-3 (+strand): . . . . . . 65682 AATGATCATATATATAGATGCTCTGGCTGCGGTTTTCTACTCATAGACTATAGTTCTATG N D H I Y R C S G C G F L L I D Y S S M M I I Y I D A L A A V F Y S - T I V L C - S Y I - M L W L R F S T H R L - F Y . . . . . . 65742 CTAATCCAAAATAGGCAGTAGATTTAAACATTTCGTGTTTGGAATGGCAAAATCATTGGG L I Q N R Q - I - T F R V W N G K I I G - S K I G S R F K H F V F G M A K S L G A N P K - A V D L N I S C L E W Q N H W . . . . . . 65802 CATGCTGTCCTTGCTTCAACAAACTATAGAACTAAAATGAACTCCTTCGTTATTGTATAA H A V L A S T N Y R T K M N S F V I V - M L S L L Q Q T I E L K - T P S L L Y K A C C P C F N K L - N - N E L L R Y C I . . . . . . 65862 GCACTGTTTTTTGGGTTACAGTTGATTATAATAACATGAAAGGTAATTTTTGAAGTAGAT A L F F G L Q L I I I T - K V I F E V D H C F L G Y S - L - - H E R - F L K - I S T V F W V T V D Y N N M K G N F - S R . . . . . . 65922 AACAGTGAGTGAAATAAATTTGCTCAAAAAGTTAGAATATTAGCTTGTTCTACTAGATGT N S E - N K F A Q K V R I L A C S T R C T V S E I N L L K K L E Y - L V L L D V - Q - V K - I C S K S - N I S L F Y - M . . . . . . 65982 TTATGCATACTGCTGATATCCCCTTTCTTTGGTATATGGGGTCAAACCCCCTGTTTTATT L C I L L I S P F F G I W G Q T P C F I Y A Y C - Y P L S L V Y G V K P P V L F F M H T A D I P F L W Y M G S N P L F Y . . . . . . 66042 CAGGGAAAAATGCCAGCACTGACTTGGTGCTTGATCATTTTGATGAATAAGATCTTTGCT Q G K M P A L T W C L I I L M N K I F A R E K C Q H - L G A - S F - - I R S L L S G K N A S T D L V L D H F D E - D L C . . . . . . 66102 TATCCCATAATAAAAAGTATAATTTCACAATTTGGAAATCAGGCGTTCAATCAAAATAAT Y P I I K S I I S Q F G N Q A F N Q N N I P - - K V - F H N L E I R R S I K I I L S H N K K Y N F T I W K S G V Q S K - . . . . . . 66162 ACACCTTGTAGATGTTAATGTGAACTTGTGCTGGAGTTTAGCTTTTTATGGTGCAGTTAC T P C R C - C E L V L E F S F L W C S Y H L V D V N V N L C W S L A F Y G A V T Y T L - M L M - T C A G V - L F M V Q L . . . . . . 66222 TCTATCTTTGCTATAGCCTGGTTGTCATAAAGTTGTGGTGCATACAAAAGTTTGGATAGT S I F A I A W L S - S C G A Y K S L D S L S L L - P G C H K V V V H T K V W I V L Y L C Y S L V V I K L W C I Q K F G - . . . . . . 66282 TTCCAAAGATGTGAAGATGATTAACTATTTTATCACTTTGTAGGAGTGGAAAAGGGCTCG F Q R C E D D - L F Y H F V G V E K G S S K D V K M I N Y F I T L - E W K R A R F P K M - R - L T I L S L C R S G K G L . . . . . . 66342 AAGGACCCACAGAGGGAGAAAGTGGGGAAAATAACTATTGATCAATTGAAGGTAATTGCT K D P Q R E K V G K I T I D Q L K V I A R T H R G R K W G K - L L I N - R - L L E G P T E G E S G E N N Y - S I E G N C . . . . . 66402 CAAGAGAAGTTGCCGGATCTTAATTGTTCTACTATTGAATCTGCAA Q E K L P D L N C S T I E S A K R S C R I L I V L L L N L Q S R E V A G S - L F Y Y - I C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-15_AGS-3_PPS_1 (65934 66179) (frame '1'; 243 bp, 81 residues) 1 NKFAQKVRIL ACSTRCLCIL LISPFFGIWG QTPCFIQGKM PALTWCLIIL MNKIFAYPII 61 KSIISQFGNQ AFNQNNTPCR C- 3-phase translation of AGS-3 (-strand): . . . . . . 66447 TTGCAGATTCAATAGTAGAACAATTAAGATCCGGCAACTTCTCTTGAGCAATTACCTTCA L Q I Q - - N N - D P A T S L E Q L P S C R F N S R T I K I R Q L L L S N Y L Q A D S I V E Q L R S G N F S - A I T F . . . . . . 66387 ATTGATCAATAGTTATTTTCCCCACTTTCTCCCTCTGTGGGTCCTTCGAGCCCTTTTCCA I D Q - L F S P L S P S V G P S S P F P L I N S Y F P H F L P L W V L R A L F H N - S I V I F P T F S L C G S F E P F S . . . . . . 66327 CTCCTACAAAGTGATAAAATAGTTAATCATCTTCACATCTTTGGAAACTATCCAAACTTT L L Q S D K I V N H L H I F G N Y P N F S Y K V I K - L I I F T S L E T I Q T F T P T K - - N S - S S S H L W K L S K L . . . . . . 66267 TGTATGCACCACAACTTTATGACAACCAGGCTATAGCAAAGATAGAGTAACTGCACCATA C M H H N F M T T R L - Q R - S N C T I V C T T T L - Q P G Y S K D R V T A P - L Y A P Q L Y D N Q A I A K I E - L H H . . . . . . 66207 AAAAGCTAAACTCCAGCACAAGTTCACATTAACATCTACAAGGTGTATTATTTTGATTGA K S - T P A Q V H I N I Y K V Y Y F D - K A K L Q H K F T L T S T R C I I L I E K K L N S S T S S H - H L Q G V L F - L . . . . . . 66147 ACGCCTGATTTCCAAATTGTGAAATTATACTTTTTATTATGGGATAAGCAAAGATCTTAT T P D F Q I V K L Y F L L W D K Q R S Y R L I S K L - N Y T F Y Y G I S K D L I N A - F P N C E I I L F I M G - A K I L . . . . . . 66087 TCATCAAAATGATCAAGCACCAAGTCAGTGCTGGCATTTTTCCCTGAATAAAACAGGGGG S S K - S S T K S V L A F F P E - N R G H Q N D Q A P S Q C W H F S L N K T G G F I K M I K H Q V S A G I F P - I K Q G . . . . . . 66027 TTTGACCCCATATACCAAAGAAAGGGGATATCAGCAGTATGCATAAACATCTAGTAGAAC F D P I Y Q R K G I S A V C I N I - - N L T P Y T K E R G Y Q Q Y A - T S S R T V - P H I P K K G D I S S M H K H L V E . . . . . . 65967 AAGCTAATATTCTAACTTTTTGAGCAAATTTATTTCACTCACTGTTATCTACTTCAAAAA K L I F - L F E Q I Y F T H C Y L L Q K S - Y S N F L S K F I S L T V I Y F K N Q A N I L T F - A N L F H S L L S T S K . . . . . . 65907 TTACCTTTCATGTTATTATAATCAACTGTAACCCAAAAAACAGTGCTTATACAATAACGA L P F M L L - S T V T Q K T V L I Q - R Y L S C Y Y N Q L - P K K Q C L Y N N E I T F H V I I I N C N P K N S A Y T I T . . . . . . 65847 AGGAGTTCATTTTAGTTCTATAGTTTGTTGAAGCAAGGACAGCATGCCCAATGATTTTGC R S S F - F Y S L L K Q G Q H A Q - F C G V H F S S I V C - S K D S M P N D F A K E F I L V L - F V E A R T A C P M I L . . . . . . 65787 CATTCCAAACACGAAATGTTTAAATCTACTGCCTATTTTGGATTAGCATAGAACTATAGT H S K H E M F K S T A Y F G L A - N Y S I P N T K C L N L L P I L D - H R T I V P F Q T R N V - I Y C L F W I S I E L - . . . . . 65727 CTATGAGTAGAAAACCGCAGCCAGAGCATCTATATATATGATCATT L - V E N R S Q S I Y I Y D H Y E - K T A A R A S I Y M I I S M S R K P Q P E H L Y I - S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (67033 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68236) SCR (e 1.000 d 0.744 a 0.955,e 1.000 d 0.879 a 0.732,e 1.000 d 0.913 a 0.989,e 1.000 d 0.986 a 0.983,e 1.000 d 0.978 a 0.991,e 0.993) Exon 1 67033 67292 ( 260 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 Pa: 0.955 Exon 2 67373 67483 ( 111 n); score: 1.000 Intron 2 67484 67559 ( 76 n); Pd: 0.879 Pa: 0.732 Exon 3 67560 67616 ( 57 n); score: 1.000 Intron 3 67617 67685 ( 69 n); Pd: 0.913 Pa: 0.989 Exon 4 67686 67748 ( 63 n); score: 1.000 Intron 4 67749 67825 ( 77 n); Pd: 0.986 Pa: 0.983 Exon 5 67826 67888 ( 63 n); score: 1.000 Intron 5 67889 67958 ( 70 n); Pd: 0.978 Pa: 0.991 Exon 6 67959 68236 ( 278 n); score: 0.993 PGS (67033 67292,67373 67483) SGN-E277590+ PGS (67118 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68109) SGN-E295324+ PGS (67122 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68227) SGN-E343278+ PGS (67438 67483,67560 67616,67686 67748,67826 67888,67959 68199) SGN-E279434- PGS (67725 67748,67826 67888,67959 68236) SGN-E223595- PGS (67729 67748,67826 67888,67959 68236) SGN-E223214- 3-phase translation of AGS-4 (+strand): . . . . . . 67033 TAATAAGTAAAGATAAGGAAGGAGAGCCACCCACACCATTTTATTTATAGAAAATATTGT - - V K I R K E S H P H H F I Y R K Y C N K - R - G R R A T H T I L F I E N I V I S K D K E G E P P T P F Y L - K I L . . . . . . 67093 AAAGCTCCATTGCTGGCAGTAGCAGTGAAATGAGAGCAATTGAAATATACTGGTATGGGG K A P L L A V A V K - E Q L K Y T G M G K L H C W Q - Q - N E S N - N I L V W G - S S I A G S S S E M R A I E I Y W Y G . . . . . . 67153 GCTTAGCCGCTTCCACTCTATCACAATCATCATTGTCGTGTATTTCCAAGGTTCATCAGA A - P L P L Y H N H H C R V F P R F I R L S R F H S I T I I I V V Y F Q G S S E G L A A S T L S Q S S L S C I S K V H Q . . . . . . 67213 GATGCCTGCGAACAAAAATCAAAGCAGTTGCAAGTAGTCATGAGAAGGAAGAGGCTTGTG D A C E Q K S K Q L Q V V M R R K R L V M P A N K N Q S S C K - S - E G R G L C R C L R T K I K A V A S S H E K E E A C . . : . . . . 67273 TGAAGTTTGCCTTTGTCAGC : TCAGTACTCCTACCAGATGGGACACCAGATGTGCAGCTAA - S L P L S A : Q Y S Y Q M G H Q M C S - E V C L C Q : L S T P T R W D T R C A A K V K F A F V S : S V L L P D G T P D V Q L . . . . . . 67413 GGAAAGCATGTGGCGGCCAAAAACTTAGGGACATAATGCTCGATGCTAATGTCGAGTTGT G K H V A A K N L G T - C S M L M S S C E S M W R P K T - G H N A R C - C R V V R K A C G G Q K L R D I M L D A N V E L . . : . . . . 67473 ATGGACCTTAT : GCAAGACCTTTGCTCAATTGTGGGGGAGGAGGAACTTGTGCTACATGTT M D L M : Q D L C S I V G E E E L V L H V W T L : C K T F A Q L W G R R N L C Y M F Y G P Y : A R P L L N C G G G G T C A T C . : . . . . . 67609 TGGTTGAG : GTTGTTGAAGGAAAGGAGCTACTCAACCCTCGCACAGACAAGGAGAATGAAA W L R : L L K E R S Y S T L A Q T R R M K G - : G C - R K G A T Q P S H R Q G E - K L V E : V V E G K E L L N P R T D K E N E . . : . . . . 67738 ATTTAAAACGG : CATCCAAATAATTGGAGGCTTGCTTGTCAGGCAATAGTTGGTAAACCTG I - N G : I Q I I G G L L V R Q - L V N L F K T : A S K - L E A C L S G N S W - T - N L K R : H P N N W R L A C Q A I V G K P . . : . . . . 67875 ATTCTAGAGGCATG : ATGACCATTCAGCAACTTCCGGAATGGAAAGCACACGAGTGGAATT I L E A - : - P F S N F R N G K H T S G I F - R H : D D H S A T S G M E S T R V E L D S R G M : M T I Q Q L P E W K A H E W N . . . . . . 68005 ATAGAGGATTACCGCCTAATGAAGAGGAAGAAGAAGAAGCAGCATCAATTTCTTCATCTT I E D Y R L M K R K K K K Q H Q F L H L - R I T A - - R G R R R S S I N F F I F Y R G L P P N E E E E E E A A S I S S S . . . . . . 68065 CAGCCTGAGTTTTTATCTTTACACAACAGCTTGATCAATTATGTATGTCATGTCACAATA Q P E F L S L H N S L I N Y V C H V T I S L S F Y L Y T T A - S I M Y V M S Q - S A - V F I F T Q Q L D Q L C M S C H N . . . . . . 68125 ACCAGCTCTTCTCTTTTTGAGTCCAATTATATATGAGCTTCATAAATTTCTAAAAGTAAA T S S S L F E S N Y I - A S - I S K S K P A L L F L S P I I Y E L H K F L K V K N Q L F S F - V Q L Y M S F I N F - K - . . . . . . 68185 AGAAAATACTTGGAATGGGAACAATAATTGATTAGTATGTCATCAAAAGAAA R K Y L E W E Q - L I S M S S K E E N T W N G N N N - L V C H Q K K K K I L G M G T I I D - Y V I K R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-15_AGS-4_PPS_1 (67095 67292,67373 67483,67560 67616,67686 67748,67826 67888,67959 68072) (frame '0'; 603 bp, 201 residues) 1 SSIAGSSSEM RAIEIYWYGG LAASTLSQSS LSCISKVHQR CLRTKIKAVA SSHEKEEACV 61 KFAFVSSVLL PDGTPDVQLR KACGGQKLRD IMLDANVELY GPYARPLLNC GGGGTCATCL 121 VEVVEGKELL NPRTDKENEN LKRHPNNWRL ACQAIVGKPD SRGMMTIQQL PEWKAHEWNY 181 RGLPPNEEEE EEAASISSSS A- AGS-5 (67128 67292,67373 67483,67560 67616,67686 67793) SCR (e 1.000 d 0.744 a 0.955,e 1.000 d 0.879 a 0.732,e 1.000 d 0.913 a 0.989,e 1.000) Exon 1 67128 67292 ( 165 n); score: 1.000 Intron 1 67293 67372 ( 80 n); Pd: 0.744 Pa: 0.955 Exon 2 67373 67483 ( 111 n); score: 1.000 Intron 2 67484 67559 ( 76 n); Pd: 0.879 Pa: 0.732 Exon 3 67560 67616 ( 57 n); score: 1.000 Intron 3 67617 67685 ( 69 n); Pd: 0.913 Pa: 0.989 Exon 4 67686 67793 ( 108 n); score: 1.000 PGS (67128 67292,67373 67483,67560 67616,67686 67793) SGN-E324857+ 3-phase translation of AGS-5 (+strand): . . . . . . 67128 GCAATTGAAATATACTGGTATGGGGGCTTAGCCGCTTCCACTCTATCACAATCATCATTG A I E I Y W Y G G L A A S T L S Q S S L Q L K Y T G M G A - P L P L Y H N H H C N - N I L V W G L S R F H S I T I I I . . . . . . 67188 TCGTGTATTTCCAAGGTTCATCAGAGATGCCTGCGAACAAAAATCAAAGCAGTTGCAAGT S C I S K V H Q R C L R T K I K A V A S R V F P R F I R D A C E Q K S K Q L Q V V V Y F Q G S S E M P A N K N Q S S C K . . . . . : . 67248 AGTCATGAGAAGGAAGAGGCTTGTGTGAAGTTTGCCTTTGTCAGC : TCAGTACTCCTACCA S H E K E E A C V K F A F V S : S V L L P V M R R K R L V - S L P L S A : Q Y S Y Q - S - E G R G L C E V C L C Q : L S T P T . . . . . . 67388 GATGGGACACCAGATGTGCAGCTAAGGAAAGCATGTGGCGGCCAAAAACTTAGGGACATA D G T P D V Q L R K A C G G Q K L R D I M G H Q M C S - G K H V A A K N L G T - R W D T R C A A K E S M W R P K T - G H . . . . : . . 67448 ATGCTCGATGCTAATGTCGAGTTGTATGGACCTTAT : GCAAGACCTTTGCTCAATTGTGGG M L D A N V E L Y G P Y : A R P L L N C G C S M L M S S C M D L M : Q D L C S I V G N A R C - C R V V W T L : C K T F A Q L W . . . . : . . 67584 GGAGGAGGAACTTGTGCTACATGTTTGGTTGAG : GTTGTTGAAGGAAAGGAGCTACTCAAC G G G T C A T C L V E : V V E G K E L L N E E E L V L H V W L R : L L K E R S Y S T G R R N L C Y M F G - : G C - R K G A T Q . . . . . . 67713 CCTCGCACAGACAAGGAGAATGAAAATTTAAAACGGGTATACATATATATATATATACGA P R T D K E N E N L K R V Y I Y I Y I R L A Q T R R M K I - N G Y T Y I Y I Y E P S H R Q G E - K F K T G I H I Y I Y T . . . 67773 GCAAGTGATGAATGTAGTACT A S D E C S T Q V M N V V S K - - M - Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-15_AGS-5_PPS_1 (67128 67292,67373 67483,67560 67616,67686 67793) (frame '1'; 441 bp, 147 residues) 1 AIEIYWYGGL AASTLSQSSL SCISKVHQRC LRTKIKAVAS SHEKEEACVK FAFVSSVLLP 61 DGTPDVQLRK ACGGQKLRDI MLDANVELYG PYARPLLNCG GGGTCATCLV EVVEGKELLN 121 PRTDKENENL KRVYIYIYIR ASDECST PGL 16 (+ strand): 68954 70524 AGS-1 (68954 69016,69161 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70524) SCR (e 0.437 d 0.900 a 0.000,e 0.828 d 1.000 a 0.963,e 0.931 d 0.782 a 0.993,e 0.894 d 1.000 a 0.995,e 1.000 d 0.978 a 0.601,e 1.000 d 0.980 a 0.992,e 1.000 d 0.976 a 0.997,e 1.000 d 0.903 a 0.997,e 0.957) Exon 1 68954 69016 ( 63 n); score: 0.437 Intron 1 69017 69160 ( 144 n); Pd: 0.900 Pa: 0.000 Exon 2 69161 69253 ( 93 n); score: 0.828 Intron 2 69254 69339 ( 86 n); Pd: 1.000 Pa: 0.963 Exon 3 69340 69368 ( 29 n); score: 0.931 Intron 3 69369 69448 ( 80 n); Pd: 0.782 Pa: 0.993 Exon 4 69449 69514 ( 66 n); score: 0.894 Intron 4 69515 69600 ( 86 n); Pd: 1.000 Pa: 0.995 Exon 5 69601 69708 ( 108 n); score: 1.000 Intron 5 69709 69794 ( 86 n); Pd: 0.978 Pa: 0.601 Exon 6 69795 69860 ( 66 n); score: 1.000 Intron 6 69861 69926 ( 66 n); Pd: 0.980 Pa: 0.992 Exon 7 69927 70047 ( 121 n); score: 1.000 Intron 7 70048 70118 ( 71 n); Pd: 0.976 Pa: 0.997 Exon 8 70119 70200 ( 82 n); score: 1.000 Intron 8 70201 70279 ( 79 n); Pd: 0.903 Pa: 0.997 Exon 9 70280 70524 ( 245 n); score: 0.957 PGS (68954 69016,69161 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70304) SGN-E322639+ PGS (69223 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70318) SGN-E341296+ PGS (69505 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70524) SGN-E339227+ PGS (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) SGN-E351795+ PGS (69649 69708,69795 69860,69927 70047,70119 70200,70280 70489) SGN-E356409+ PGS (69649 69708,69795 69860,69927 70047,70119 70200,70280 70484) SGN-E352888+ 3-phase translation of AGS-1 (+strand): . . . . . . 68954 TTTAGTTTGTAGGTTAGGTGAATTAGAAAAATCAGGAAAAGGAATCGGACAACAATATTA F S L - V R - I R K I R K R N R T T I L L V C R L G E L E K S G K G I G Q Q Y Y - F V G - V N - K N Q E K E S D N N I . : . . . . . 69014 CTA : AACAAAGACACGCCCCTCGTTTGAATGAGAGGATTCTCTCATCATTGTCAAGGAGGT L : N K D T P L V - M R G F S H H C Q G G - : T K T R P S F E - E D S L I I V K E V T : K Q R H A P R L N E R I L S S L S R R . . . . : . . 69218 CTGTCGCCGCTCACCCATGGCACGATCTCGAGATAG : GACCTGAAGCTCCAAATGTTTTCA L S P L T H G T I S R - : D L K L Q M F S C R R S P M A R S R D R : T - S S K C F Q S V A A H P W H D L E I : G P E A P N V F . : . . . . . 69364 ATGTT : GTCATTGAGATATCGAAAGGCAGTAAAGTCAAATATGAGCTTGACAAGAAAACTG M L : S L R Y R K A V K S N M S L T R K L C : C H - D I E R Q - S Q I - A - Q E N W N V : V I E I S K G S K V K Y E L D K K T . . : . . . . 69504 GTCTCATTAAG : GTTGATCGCGTCCTATACTCATCAATGGTGTACCCCCAGAACTATGGCT V S L R : L I A S Y T H Q W C T P R T M A S H - : G - S R P I L I N G V P P E L W L G L I K : V D R V L Y S S M V Y P Q N Y G . . . . . . : 69650 TCATTCCTCGGACTTTATGTGAAGATAATGACCCCATGGATGTACTAGTGCTCATGCAG : G S F L G L Y V K I M T P W M Y - C S C R : H S S D F M - R - - P H G C T S A H A : G F I P R T L C E D N D P M D V L V L M Q : . . . . . . 69796 AGCCTGTTCTCCCAGGCTGTTTCCTTCGAGCTAGGGCCATAGGTTTAATGCCTATGATTG S L F S Q A V S F E L G P - V - C L - L A C S P R L F P S S - G H R F N A Y D - E P V L P G C F L R A R A I G L M P M I . : . . . . . 69856 ATCAG : GGTGAGAAGGATGATAAGATAATAGCAGTTTGTGCTGACGATCCAGAATATCGCC I R : V R R M I R - - Q F V L T I Q N I A S : G - E G - - D N S S L C - R S R I S P D Q : G E K D D K I I A V C A D D P E Y R . . . . . . 69982 ACTACACTGATATTAACCAGCTTGCTCCTCACCGTCTGGCAGAAATCCGCCGCTTTTTTG T T L I L T S L L L T V W Q K S A A F L L H - Y - P A C S S P S G R N P P L F - H Y T D I N Q L A P H R L A E I R R F F . : . . . . . 70042 AAGACT : ACAAGAAGCTTGAGAACAAGGAGGTTGCTGTCAATGAGTTCCTGCCTCCAAGCA K T : T R S L R T R R L L S M S S C L Q A R L : Q E A - E Q G G C C Q - V P A S K H E D : Y K K L E N K E V A V N E F L P P S . . . : . . . 70173 CTGCTGTCCAAGCCATACAATATTCAAT : GGACCTTTATGCCGAATACATATTACAGACAC L L S K P Y N I Q : W T F M P N T Y Y R H C C P S H T I F N : G P L C R I H I T D T T A V Q A I Q Y S M : D L Y A E Y I L Q T . . . . . . 70312 TGAGAAAGTAATCTACACTTTTATGTTATGATTGTTGTGTTTATCTTTCATAAGTATTTT - E S N L H F Y V M I V V F I F H K Y F E K V I Y T F M L - L L C L S F I S I F L R K - S T L L C Y D C C V Y L S - V F . . . . . . 70372 CTTTGTATTTGTGGGGGGGAGGGGTGAAATTCTATAGCGCATTACATGTCATTCAATTCA L C I C G G E G - N S I A H Y M S F N S F V F V G G R G E I L - R I T C H S I Q S L Y L W G G G V K F Y S A L H V I Q F . . . . . . 70432 GTACTTGTAGTCAATTGTATTGAAACTTCAAGTACCGACTAGTCTATTAGCATGTTGAAT V L V V N C I E T S S T D - S I S M L N Y L - S I V L K L Q V P T S L L A C - I S T C S Q L Y - N F K Y R L V Y - H V E . . . . 70492 CCTATGGGCTTGGTTGATCCACACCAAAGATAT P M G L V D P H Q R Y L W A W L I H T K D S Y G L G - S T P K I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-16_AGS-1_PPS_1 (68980 69016,69161 69253,69340 69368,69449 69514,69601 69708,69795 69860,69927 70047,70119 70200,70280 70322) (frame '0'; 642 bp, 214 residues) 1 KNQEKESDNN ITKQRHAPRL NERILSSLSR RSVAAHPWHD LEIGPEAPNV FNVVIEISKG 61 SKVKYELDKK TGLIKVDRVL YSSMVYPQNY GFIPRTLCED NDPMDVLVLM QEPVLPGCFL 121 RARAIGLMPM IDQGEKDDKI IAVCADDPEY RHYTDINQLA PHRLAEIRRF FEDYKKLENK 181 EVAVNEFLPP STAVQAIQYS MDLYAEYILQ TLRK- AGS-2 (69181 69253,69340 69368,69449 69514,69601 69708,69795 70047) SCR (e 0.973 d 1.000 a 0.963,e 1.000 d 0.782 a 0.993,e 1.000 d 1.000 a 0.995,e 1.000 d 0.978 a 0.601,e 1.000) Exon 1 69181 69253 ( 73 n); score: 0.973 Intron 1 69254 69339 ( 86 n); Pd: 1.000 Pa: 0.963 Exon 2 69340 69368 ( 29 n); score: 1.000 Intron 2 69369 69448 ( 80 n); Pd: 0.782 Pa: 0.993 Exon 3 69449 69514 ( 66 n); score: 1.000 Intron 3 69515 69600 ( 86 n); Pd: 1.000 Pa: 0.995 Exon 4 69601 69708 ( 108 n); score: 1.000 Intron 4 69709 69794 ( 86 n); Pd: 0.978 Pa: 0.601 Exon 5 69795 70047 ( 253 n); score: 1.000 PGS (69181 69253,69340 69368,69449 69514,69601 69708,69795 70047) SGN-E307804+ 3-phase translation of AGS-2 (+strand): . . . . . . 69181 TTGAATGAGAGGATTCTCTCATCATTGTCAAGGAGGTCTGTCGCCGCTCACCCATGGCAC L N E R I L S S L S R R S V A A H P W H - M R G F S H H C Q G G L S P L T H G T E - E D S L I I V K E V C R R S P M A . . : . . . : . 69241 GATCTCGAGATAG : GACCTGAAGCTCCAAATGTTTTCAATGTT : GTCATTGAGATATCGAAA D L E I : G P E A P N V F N V : V I E I S K I S R - : D L K L Q M F S M L : S L R Y R K R S R D R : T - S S K C F Q C : C H - D I E . . . . . : . 69467 GGCAGTAAAGTCAAATATGAGCTTGACAAGAAAACTGGTCTCATTAAG : GTTGATCGCGTC G S K V K Y E L D K K T G L I K : V D R V A V K S N M S L T R K L V S L R : L I A S R Q - S Q I - A - Q E N W S H - : G - S R . . . . . . 69613 CTATACTCATCAATGGTGTACCCCCAGAACTATGGCTTCATTCCTCGGACTTTATGTGAA L Y S S M V Y P Q N Y G F I P R T L C E Y T H Q W C T P R T M A S F L G L Y V K P I L I N G V P P E L W L H S S D F M - . . . . : . . 69673 GATAATGACCCCATGGATGTACTAGTGCTCATGCAG : GAGCCTGTTCTCCCAGGCTGTTTC D N D P M D V L V L M Q : E P V L P G C F I M T P W M Y - C S C R : S L F S Q A V S R - - P H G C T S A H A : G A C S P R L F . . . . . . 69819 CTTCGAGCTAGGGCCATAGGTTTAATGCCTATGATTGATCAGGTTAGGTTGATTGCTGCC L R A R A I G L M P M I D Q V R L I A A F E L G P - V - C L - L I R L G - L L P P S S - G H R F N A Y D - S G - V D C C . . . . . . 69879 TGCAGGTTAAACTTTATTTCCTATCTGATAAAAGGATTTTTAATCCAGGGTGAGAAGGAT C R L N F I S Y L I K G F L I Q G E K D A G - T L F P I - - K D F - S R V R R M L Q V K L Y F L S D K R I F N P G - E G . . . . . . 69939 GATAAGATAATAGCAGTTTGTGCTGACGATCCAGAATATCGCCACTACACTGATATTAAC D K I I A V C A D D P E Y R H Y T D I N I R - - Q F V L T I Q N I A T T L I L T - - D N S S L C - R S R I S P L H - Y - . . . . . 69999 CAGCTTGCTCCTCACCGTCTGGCAGAAATCCGCCGCTTTTTTGAAGACT Q L A P H R L A E I R R F F E D S L L L T V W Q K S A A F L K T P A C S S P S G R N P P L F - R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1+_PGL-16_AGS-2_PPS_1 (69181 69253,69340 69368,69449 69514,69601 69708,69795 70046) (frame '1'; 528 bp, 176 residues) 1 LNERILSSLS RRSVAAHPWH DLEIGPEAPN VFNVVIEISK GSKVKYELDK KTGLIKVDRV 61 LYSSMVYPQN YGFIPRTLCE DNDPMDVLVL MQEPVLPGCF LRARAIGLMP MIDQVRLIAA 121 CRLNFISYLI KGFLIQGEKD DKIIAVCADD PEYRHYTDIN QLAPHRLAEI RRFFED PGL 17 (- strand): 73480 70827 AGS-1 (73480 73350,71328 70827) SCR (e 1.000 d 0.999 a 0.953,e 1.000) Exon 1 73480 73350 ( 131 n); score: 1.000 Intron 1 73349 71329 (2021 n); Pd: 0.999 Pa: 0.953 Exon 2 71328 70827 ( 502 n); score: 1.000 PGS (73465 73350,71328 70827) SGN-E311216+ PGS (73480 73350,71328 70936) SGN-E268912+ PGS (71211 71027) SGN-E226941- PGS (73443 73350,71328 71031) SGN-E226602- 3-phase translation of AGS-1 (-strand): . . . . . . 73480 TGAAAGGGGATATGGATTCTTTTTCGTCGCCGCCGCCGCATAGTGGAGCATCCTCCCAAT - K G I W I L F R R R R R I V E H P P N E R G Y G F F F V A A A A - W S I L P I K G D M D S F S S P P P H S G A S S Q . . . . . . 73420 TCTCGACTAATGACATAATGGACCAGGTCAAAACTCAGCTTGAACAGGCATACGCCGAGC S R L M T - W T R S K L S L N R H T P S L D - - H N G P G Q N S A - T G I R R A F S T N D I M D Q V K T Q L E Q A Y A E . . : . . . . 73360 AATTTCTCGAG : ACGGTGAGGGACAAATGCTTTGACAAGTGTATCACCAAACCAGGGAGCA N F S R : R - G T N A L T S V S P N Q G A I S R : D G E G Q M L - Q V Y H Q T R E Q Q F L E : T V R D K C F D K C I T K P G S . . . . . . 71279 GTCTAAGTGGAAGTGAAGGTAGTTGCATCTCAAGGTGTGTTGATCGGTATATCGAGGCCA V - V E V K V V A S Q G V L I G I S R P S K W K - R - L H L K V C - S V Y R G H S L S G S E G S C I S R C V D R Y I E A . . . . . . 71219 CTGGTATAATTAGCAAAGCTCTCTTCAGTCAACGCTGAAACTGTAGTTGGGTAGATCTCA L V - L A K L S S V N A E T V V G - I S W Y N - Q S S L Q S T L K L - L G R S Q T G I I S K A L F S Q R - N C S W V D L . . . . . . 71159 AGGCTTGCTTGCTCAGTAAATGCTGGAATGCATTAATTAATCTTTGATACCCTTTGTCAT R L A C S V N A G M H - L I F D T L C H G L L A Q - M L E C I N - S L I P F V I K A C L L S K C W N A L I N L - Y P L S . . . . . . 71099 TTTCCGTTTTAAAGAAGGTTCTCAAGTATTTTGTAAAAGATGTTCTTCATTAATACTTTG F P F - R R F S S I L - K M F F I N T L F R F K E G S Q V F C K R C S S L I L C F S V L K K V L K Y F V K D V L H - Y F . . . . . . 71039 TTGTTGATGGACAGCCAAATTTTTTTTTTTATCTATAGCGTACTATTAAGATTTACATGG L L M D S Q I F F F I Y S V L L R F T W C - W T A K F F F L S I A Y Y - D L H G V V D G Q P N F F F Y L - R T I K I Y M . . . . . . 70979 GCAATGTTGCACTTTGCCCTGGTGTTGTATACGTGCTTTCATGCATAAGTTATTTAGTAG A M L H F A L V L Y T C F H A - V I - - Q C C T L P W C C I R A F M H K L F S R G N V A L C P G V V Y V L S C I S Y L V . . . . . . 70919 GATTGAGGAAACCATAAGTGCATGAAGATGTCATAAAAGAAAATCTTATAATTTCCTGCA D - G N H K C M K M S - K K I L - F P A I E E T I S A - R C H K R K S Y N F L H G L R K P - V H E D V I K E N L I I S C . . . . 70859 TTTGGCGCAAGGTGTTATCTGGGCCCTAATTTA F G A R C Y L G P N L L A Q G V I W A L I I W R K V L S G P - F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0064M21.1-_PGL-17_AGS-1_PPS_1 (73478 73350,71328 71182) (frame '0'; 273 bp, 91 residues) 1 KGDMDSFSSP PPHSGASSQF STNDIMDQVK TQLEQAYAEQ FLETVRDKCF DKCITKPGSS 61 LSGSEGSCIS RCVDRYIEAT GIISKALFSQ R- ... finished at: Tue Jul 25 12:22:07 2006