GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 15:21:35 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-MByaW/C08HBa0167P18/C08HBa0167P18.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0167P18.1, from 1 to 45394, both strands analyzed. ... started at: Tue Jul 25 15:48:10 2006 EST library file: /tmp/cxgn-bacpublish-resources-zkcOgk/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 30 EST library file: /tmp/cxgn-bacpublish-resources-zkcOgk/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 14 ******************************************************************************** EST sequence 29 +strand 727 n (File: SGN-E346224+) 1 AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCTTGTTGTT CTTCTTCTTC 61 TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAG AGTGATGGCA AGCACTACTG 121 TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 181 CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 241 CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCTGAAATCA AAGTTATACC 301 GATTTGACAA GGAAGGGAGT CAATGGAAAG AGAGAGGTGT TGGGACTGTG AAGCTTCTCA 361 AGCACAAGGA AACTGGAAAG GTTAGGCTTG TGATGAGGCA ATCCAAGACG CTGAAAATCT 421 GTGCCAACCA CTTGGTCCTT CCTACTATGT CGATCCAAGA ACATGCTGGG AATGAGAAGT 481 CTTGTGTGTG GCATGCTGCT GACTTTGCTG ATGGAGAACT GAAAGATGAG ACTTTTTGCA 541 TCCGCTTTGC TTCAGTTGAG AATTGCAAGG CTTTCAAAGA GAAGGTTGAA GAAATTGCTG 601 AATCTCAACA GACAAAGTCT GGACAAAGTG AAGAAGCTGG TGCTGCTGCT ACTGAACTTA 661 TTGAAAAGCT TAGTGTTGAA AGCAAAGATA AAAATGANCA ACCTGAAGAC AAAGAGGCCC 721 CTGCAGC Predicted gene structure (within gDNA segment 4192 to 7959): Exon 1 4792 5074 ( 283 n); cDNA 1 283 ( 283 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 6009 ( 152 n); cDNA 284 435 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 1.00) Exon 3 6132 6257 ( 126 n); cDNA 436 561 ( 126 n); score: 1.000 Intron 3 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 7184 7349 ( 166 n); cDNA 562 727 ( 166 n); score: 0.988 MATCH C08HBa0167P18.1+ SGN-E346224+ 0.997 727 1.000 C PGS_C08HBa0167P18.1+_SGN-E346224+ (4792 5074,5858 6009,6132 6257,7184 7349) Alignment (genomic DNA sequence = upper lines): AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCTTGTTGTT CTTCTTCTTC 4851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCTTGTTGTT CTTCTTCTTC 60 TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAG AGTGATGGCA AGCACTACTG 4911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAG AGTGATGGCA AGCACTACTG 120 TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 4971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 180 CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 5031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 240 CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCTGTTAGTA ACTCTTTTCT 5091 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCT....... .......... 283 CTATGTCTTC ATTTTTTCCA AAATCAAGCT TTAATTTCTT CATCCAGTGC TTGATCTGGT 5151 .......... .......... .......... .......... .......... .......... 283 AGTAAAGCTT TGATTTTTCT GAAAATGATT TGTAGATGTA AAGAATCTAT TATCCTTATT 5211 .......... .......... .......... .......... .......... .......... 283 TCAGAATGAT CAATGTACTA AGTCTCAATT CCAAAGTATT TATCCCACTC GATGTGATAG 5271 .......... .......... .......... .......... .......... .......... 283 CTATATGCTA AAATAGCTAC TATTGTTTTT TTCCTTTGAT TACAAACGAC TCTGTTGGGG 5331 .......... .......... .......... .......... .......... .......... 283 TCGGCTCTAT GAATCTATAA CTAATCATGT TATTTCATCC CGTGGTGGAT CCAGGATTTT 5391 .......... .......... .......... .......... .......... .......... 283 TAGTAAGGGG TTGGAAAAAA TTAAAAATGT AGTTCTTGGG ATTTGAACTT AGAGCCTCAA 5451 .......... .......... .......... .......... .......... .......... 283 GGTAATTTTG AACCTTCTGA GCCATTGATT CGAACTCTAG TATTGTGTTG AGGGGATTTG 5511 .......... .......... .......... .......... .......... .......... 283 TAGTCTATAT TTGTACACTA TTTTTTTTTA AAAAAACCCT TATAATGTAG TGTCATTATT 5571 .......... .......... .......... .......... .......... .......... 283 TTGCGAGGGT GTTCGGATCC TCTTAGATCC GCCCCTGGCT CATTTGATTA TGATTTCAAA 5631 .......... .......... .......... .......... .......... .......... 283 TATTGACTAC TGTAAACTAT AATTATATTA TCTTGTATGT CCTTTTTAAG TATTTAAATC 5691 .......... .......... .......... .......... .......... .......... 283 TTATTCTAAA AGTTCAAGGA AATGAAATGA ATTTGTTCTT TCAAACCCCA CAATTTTAAT 5751 .......... .......... .......... .......... .......... .......... 283 CACAAAGGGT GGAGTTATAC ATAAAAAAGT TGGCGAAAGA TTCCTCTTGG CAGCAAAGAG 5811 .......... .......... .......... .......... .......... .......... 283 AATGTTCATT GTTTCTGGTT GTAATCCCTG ATGTGAATTT TTGTAGGAAA TCAAAGTTAT 5871 |||| |||||||||| .......... .......... .......... .......... ......GAAA TCAAAGTTAT 297 ACCGATTTGA CAAGGAAGGG AGTCAATGGA AAGAGAGAGG TGTTGGGACT GTGAAGCTTC 5931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGATTTGA CAAGGAAGGG AGTCAATGGA AAGAGAGAGG TGTTGGGACT GTGAAGCTTC 357 TCAAGCACAA GGAAACTGGA AAGGTTAGGC TTGTGATGAG GCAATCCAAG ACGCTGAAAA 5991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCACAA GGAAACTGGA AAGGTTAGGC TTGTGATGAG GCAATCCAAG ACGCTGAAAA 417 TCTGTGCCAA CCACTTGGGT CAGAATCCTT CTTTTCCAAT TCTCTTGATT GTTGATTTCC 6051 |||||||||| |||||||| TCTGTGCCAA CCACTTGG.. .......... .......... .......... .......... 435 CTTATTGGTT TTTCTATGTT TTGTTAATGT TTGTGGTTGT ATTTATTCTG AGCTGCTGTT 6111 .......... .......... .......... .......... .......... .......... 435 TGATAAAATC TTGTGTGTAG TCCTTCCTAC TATGTCGATC CAAGAACATG CTGGGAATGA 6171 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TCCTTCCTAC TATGTCGATC CAAGAACATG CTGGGAATGA 475 GAAGTCTTGT GTGTGGCATG CTGCTGACTT TGCTGATGGA GAACTGAAAG ATGAGACTTT 6231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCTTGT GTGTGGCATG CTGCTGACTT TGCTGATGGA GAACTGAAAG ATGAGACTTT 535 TTGCATCCGC TTTGCTTCAG TTGAGAGTGA GTAATCTGTT TATGCATCTT TTGGGTATTA 6291 |||||||||| |||||||||| |||||| TTGCATCCGC TTTGCTTCAG TTGAGA.... .......... .......... .......... 561 TTATTGTGCC TTTAGTTAAG ATATGCTTTT TGAGCTATTT GTCTTCTCCT ATGCGTATGT 6351 .......... .......... .......... .......... .......... .......... 561 AACACTTGAA AGTCATTGTG ATAGGATTTC CATATGCTAT TTGAAATCTT CTATTTTCAA 6411 .......... .......... .......... .......... .......... .......... 561 TCAACATGTG ATTTATCAAT TGATAAAGAT GAAAAATGAA ATAAGCTCAC CACTTCCACA 6471 .......... .......... .......... .......... .......... .......... 561 GGGTGGATCA TTAGTTAAAT TACATACAAT TGATGGTGTT GTTTCTAAGT AGTTTAGAGT 6531 .......... .......... .......... .......... .......... .......... 561 GCCCTAATTT GTATTAGAAG AAGTGATTTA GTATTGAAAT AAAATGGTCC CAAACAGAAT 6591 .......... .......... .......... .......... .......... .......... 561 GGAATGGATA TTGAGGATTT ATATTGCCAA GTCCAACCAT ACCAAAGAAT GGTGTTTGTC 6651 .......... .......... .......... .......... .......... .......... 561 ATTGGTACTC AGTGCACATT TAGGTTATTG ATTATGATAT GTTGAATGAT GGTAATTAGC 6711 .......... .......... .......... .......... .......... .......... 561 TTAATTATGT GGCACACACT CCATACATCC ATGAGTTATA CTCTTGTTAG TGCTTCTTCA 6771 .......... .......... .......... .......... .......... .......... 561 GGAGTTGTCT TAACTAATTT CCCCTGAAGA TGGCTGAAAT ATCTTGGATG GTGGGTTATG 6831 .......... .......... .......... .......... .......... .......... 561 TCATGCGATA TTTGATACTC ACCACTCTTT AATTGAGGTT GATGTATTGG GAATCAGAAA 6891 .......... .......... .......... .......... .......... .......... 561 CTAATTTCCT TGATGTATTC TTTACTTGTA AATCACAAAT TATGAGCTTC TTATTACAGT 6951 .......... .......... .......... .......... .......... .......... 561 GTGATTACTA ATTAATGGCT TACACAAACT CCTTGAGTAC ATTCATGAAA CTTAGTTGCA 7011 .......... .......... .......... .......... .......... .......... 561 TTCCTTGCAT GGGCTGTAAT CCTGCAAGTC ATCTTAAATC AACACTGAAC AACTGTTTAG 7071 .......... .......... .......... .......... .......... .......... 561 GATTACTCCA GATTTGTAGA ACCAAGTTGA ATTAGATGTT TGGAACAATT CTTAACATTA 7131 .......... .......... .......... .......... .......... .......... 561 CCCCTGTTTT TCAAAACCAG ATTTTTAACT TTATTTTAAT CTTGTCTGTC AGATTGCAAG 7191 |||||||| .......... .......... .......... .......... .......... ..ATTGCAAG 569 GCTTTCAAAG AGAAGGTTGA AGAAATTGCT GAATCTCAAC AGACAAAGTC TGGACAAAGT 7251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTCAAAG AGAAGGTTGA AGAAATTGCT GAATCTCAAC AGACAAAGTC TGGACAAAGT 629 GAAGAAGCTG GTGCTGCTGC TACTGAACTT ATTGAAAAGC TTAGTGTTGA AAGCAAAGAT 7311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGCTG GTGCTGCTGC TACTGAACTT ATTGAAAAGC TTAGTGTTGA AAGCAAAGAT 689 AAAAATGACA AACCTGAAGA CAAAGAGGCC CCTGCAGC 7349 |||||||| |||||||||| |||||||||| |||||||| AAAAATGANC AACCTGAAGA CAAAGAGGCC CCTGCAGC 727 hqPGS_C08HBa0167P18.1+_SGN-E346224+ (4792 5074,5858 6009,6132 6257,7184 7349) ******************************************************************************** EST sequence 15 +strand 550 n (File: SGN-E256432+) 1 AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCGGGGTGTT CTTCTTCTTC 61 TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAT AGTGATGGCA AGCACTACTG 121 TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 181 CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 241 CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCTGAAATCA AAGTTATACC 301 GATTTGACAA GGAAGGGAGT CAATGGAAAG AGAGAGGTGT TGGGACTGTG AAGCTTCTCA 361 AGCACAAGGA AACTGGAAAG GTTAGGCTTG TGATGAGGCA ATCCAAGACG CTGAAAATCT 421 GTGCCAACCA CTTGGTCCTT CCTACTATGT CGATCCAAGA ACATGCTGGG AATGAGAAGT 481 CTTGTGTGTG GCATGCTGCT GACTTTGCTG ATGGAGAACT GAAAGATGAG ACTTTTTGCA 541 TCCGCTTTGC Predicted gene structure (within gDNA segment 4192 to 6856): Exon 1 4792 5074 ( 283 n); cDNA 1 283 ( 283 n); score: 0.986 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 6009 ( 152 n); cDNA 284 435 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 1.00) Exon 3 6132 6246 ( 115 n); cDNA 436 550 ( 115 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E256432+ 0.993 550 1.000 C PGS_C08HBa0167P18.1+_SGN-E256432+ (4792 5074,5858 6009,6132 6246) Alignment (genomic DNA sequence = upper lines): AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCTTGTTGTT CTTCTTCTTC 4851 |||||||||| |||||||||| |||||||||| |||||||||| || | |||| |||||||||| AAAAGAGGCA AAGTTATCAA ATCAAAAACC CTACTTCCTC CCGGGGTGTT CTTCTTCTTC 60 TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAG AGTGATGGCA AGCACTACTG 4911 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTCAAATCCG CCGTAAATCT TTCTAAAACC AAAAATCTAT AGTGATGGCA AGCACTACTG 120 TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 4971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACCCAA ATTGGAGAAG AAAGAAGAGG AAGTAGAAGC AGAAGTAGAA GAAAACCCAA 180 CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 5031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCGATGA TGAAGACACT GGTGCACAAG TTGCTCCCAT TGTTAGGCTA CAAGAAGTTG 240 CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCTGTTAGTA ACTCTTTTCT 5091 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGTCTCCAC TGGTGAAGAA AATGAACATG TTCTTCTTGA TCT....... .......... 283 CTATGTCTTC ATTTTTTCCA AAATCAAGCT TTAATTTCTT CATCCAGTGC TTGATCTGGT 5151 .......... .......... .......... .......... .......... .......... 283 AGTAAAGCTT TGATTTTTCT GAAAATGATT TGTAGATGTA AAGAATCTAT TATCCTTATT 5211 .......... .......... .......... .......... .......... .......... 283 TCAGAATGAT CAATGTACTA AGTCTCAATT CCAAAGTATT TATCCCACTC GATGTGATAG 5271 .......... .......... .......... .......... .......... .......... 283 CTATATGCTA AAATAGCTAC TATTGTTTTT TTCCTTTGAT TACAAACGAC TCTGTTGGGG 5331 .......... .......... .......... .......... .......... .......... 283 TCGGCTCTAT GAATCTATAA CTAATCATGT TATTTCATCC CGTGGTGGAT CCAGGATTTT 5391 .......... .......... .......... .......... .......... .......... 283 TAGTAAGGGG TTGGAAAAAA TTAAAAATGT AGTTCTTGGG ATTTGAACTT AGAGCCTCAA 5451 .......... .......... .......... .......... .......... .......... 283 GGTAATTTTG AACCTTCTGA GCCATTGATT CGAACTCTAG TATTGTGTTG AGGGGATTTG 5511 .......... .......... .......... .......... .......... .......... 283 TAGTCTATAT TTGTACACTA TTTTTTTTTA AAAAAACCCT TATAATGTAG TGTCATTATT 5571 .......... .......... .......... .......... .......... .......... 283 TTGCGAGGGT GTTCGGATCC TCTTAGATCC GCCCCTGGCT CATTTGATTA TGATTTCAAA 5631 .......... .......... .......... .......... .......... .......... 283 TATTGACTAC TGTAAACTAT AATTATATTA TCTTGTATGT CCTTTTTAAG TATTTAAATC 5691 .......... .......... .......... .......... .......... .......... 283 TTATTCTAAA AGTTCAAGGA AATGAAATGA ATTTGTTCTT TCAAACCCCA CAATTTTAAT 5751 .......... .......... .......... .......... .......... .......... 283 CACAAAGGGT GGAGTTATAC ATAAAAAAGT TGGCGAAAGA TTCCTCTTGG CAGCAAAGAG 5811 .......... .......... .......... .......... .......... .......... 283 AATGTTCATT GTTTCTGGTT GTAATCCCTG ATGTGAATTT TTGTAGGAAA TCAAAGTTAT 5871 |||| |||||||||| .......... .......... .......... .......... ......GAAA TCAAAGTTAT 297 ACCGATTTGA CAAGGAAGGG AGTCAATGGA AAGAGAGAGG TGTTGGGACT GTGAAGCTTC 5931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGATTTGA CAAGGAAGGG AGTCAATGGA AAGAGAGAGG TGTTGGGACT GTGAAGCTTC 357 TCAAGCACAA GGAAACTGGA AAGGTTAGGC TTGTGATGAG GCAATCCAAG ACGCTGAAAA 5991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCACAA GGAAACTGGA AAGGTTAGGC TTGTGATGAG GCAATCCAAG ACGCTGAAAA 417 TCTGTGCCAA CCACTTGGGT CAGAATCCTT CTTTTCCAAT TCTCTTGATT GTTGATTTCC 6051 |||||||||| |||||||| TCTGTGCCAA CCACTTGG.. .......... .......... .......... .......... 435 CTTATTGGTT TTTCTATGTT TTGTTAATGT TTGTGGTTGT ATTTATTCTG AGCTGCTGTT 6111 .......... .......... .......... .......... .......... .......... 435 TGATAAAATC TTGTGTGTAG TCCTTCCTAC TATGTCGATC CAAGAACATG CTGGGAATGA 6171 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TCCTTCCTAC TATGTCGATC CAAGAACATG CTGGGAATGA 475 GAAGTCTTGT GTGTGGCATG CTGCTGACTT TGCTGATGGA GAACTGAAAG ATGAGACTTT 6231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCTTGT GTGTGGCATG CTGCTGACTT TGCTGATGGA GAACTGAAAG ATGAGACTTT 535 TTGCATCCGC TTTGC 6246 |||||||||| ||||| TTGCATCCGC TTTGC 550 hqPGS_C08HBa0167P18.1+_SGN-E256432+ (4792 5074,5858 6009,6132 6246) ******************************************************************************** EST sequence 9 +strand 647 n (File: SGN-E328740+) 1 AGAAACCCTA CTTCCTCCGT TGTTGCTCTT CTTCTTCTTC AAATCCGCCG TAAATCTTTC 61 TAAAACCGAA AGTCTAGAGT GATGGCAAGC ACTACTGTTG AACCCAAATT GGAGAAGAAA 121 GAAGAGGAAG TATAAGCAAA AGTATAAGAA AACCCAACTG GCGATGATGA AGACGCTGGT 181 GCACAAGTTG CTCCCATTGT TAGGCTACAA GAAGGTGCTG TCTCCACTGG AGAAGAAAAT 241 GAACATGTTC TTCTTGATCT GAAATCAAAG TTATACCGAT TTGACAAAGA AGGGAGTCAA 301 TGGAAAGAGA GAGGTGTTGG GACTGTGAAG CTTCTCAAGC ACAAAGAAAC TGGAAAGGTT 361 AGGCTTGTGA TGAGGCAATC CAAGACGCTG AAAATCTGTG CCAACCACTT GGGCCTTCCT 421 ACTATGTCGA TCCAAGAACA TGCTGGGAAT GAGAAGTCTT GAGTGTGGCA TGCTGCTGAC 481 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAAT 541 TGCAAGGCTT TCATAGAGAA GGTTGAAGAA ATTGCTGAAT CTCAACAGAC AATGTCTGGA 601 NCAAGTGAAG AAGCTGGAGC TGCTGCTACT GAACTTACTG AAAAGCT Predicted gene structure (within gDNA segment 4197 to 8397): Exon 1 4817 5074 ( 258 n); cDNA 3 260 ( 258 n); score: 0.961 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.98) Exon 2 5858 6009 ( 152 n); cDNA 261 412 ( 152 n); score: 0.987 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 0.96) Exon 3 6132 6257 ( 126 n); cDNA 413 538 ( 126 n); score: 0.984 Intron 3 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 4 7184 7292 ( 109 n); cDNA 539 647 ( 109 n); score: 0.945 MATCH C08HBa0167P18.1+ SGN-E328740+ 0.969 645 0.997 C PGS_C08HBa0167P18.1+_SGN-E328740+ (4817 5074,5858 6009,6132 6257,7184 7292) Alignment (genomic DNA sequence = upper lines): AAACCCTACT TCCTCCCTTG TTGTTCTTCT TCTTCTTCAA ATCCGCCGTA AATCTTTCTA 4876 |||||||||| |||||| ||| ||| |||||| |||||||||| |||||||||| |||||||||| AAACCCTACT TCCTCCGTTG TTGCTCTTCT TCTTCTTCAA ATCCGCCGTA AATCTTTCTA 62 AAACCAAAAA TCTAGAGTGA TGGCAAGCAC TACTGTTGAA CCCAAATTGG AGAAGAAAGA 4936 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCGAAAG TCTAGAGTGA TGGCAAGCAC TACTGTTGAA CCCAAATTGG AGAAGAAAGA 122 AGAGGAAGTA GAAGCAGAAG TAGAAGAAAA CCCAACTGGC GATGATGAAG ACACTGGTGC 4996 |||||||||| ||||| ||| || ||||||| |||||||||| |||||||||| || ||||||| AGAGGAAGTA TAAGCAAAAG TATAAGAAAA CCCAACTGGC GATGATGAAG ACGCTGGTGC 182 ACAAGTTGCT CCCATTGTTA GGCTACAAGA AGTTGCTGTC TCCACTGGTG AAGAAAATGA 5056 |||||||||| |||||||||| |||||||||| || ||||||| |||||||| | |||||||||| ACAAGTTGCT CCCATTGTTA GGCTACAAGA AGGTGCTGTC TCCACTGGAG AAGAAAATGA 242 ACATGTTCTT CTTGATCTGT TAGTAACTCT TTTCTCTATG TCTTCATTTT TTCCAAAATC 5116 |||||||||| |||||||| ACATGTTCTT CTTGATCT.. .......... .......... .......... .......... 260 AAGCTTTAAT TTCTTCATCC AGTGCTTGAT CTGGTAGTAA AGCTTTGATT TTTCTGAAAA 5176 .......... .......... .......... .......... .......... .......... 260 TGATTTGTAG ATGTAAAGAA TCTATTATCC TTATTTCAGA ATGATCAATG TACTAAGTCT 5236 .......... .......... .......... .......... .......... .......... 260 CAATTCCAAA GTATTTATCC CACTCGATGT GATAGCTATA TGCTAAAATA GCTACTATTG 5296 .......... .......... .......... .......... .......... .......... 260 TTTTTTTCCT TTGATTACAA ACGACTCTGT TGGGGTCGGC TCTATGAATC TATAACTAAT 5356 .......... .......... .......... .......... .......... .......... 260 CATGTTATTT CATCCCGTGG TGGATCCAGG ATTTTTAGTA AGGGGTTGGA AAAAATTAAA 5416 .......... .......... .......... .......... .......... .......... 260 AATGTAGTTC TTGGGATTTG AACTTAGAGC CTCAAGGTAA TTTTGAACCT TCTGAGCCAT 5476 .......... .......... .......... .......... .......... .......... 260 TGATTCGAAC TCTAGTATTG TGTTGAGGGG ATTTGTAGTC TATATTTGTA CACTATTTTT 5536 .......... .......... .......... .......... .......... .......... 260 TTTTAAAAAA ACCCTTATAA TGTAGTGTCA TTATTTTGCG AGGGTGTTCG GATCCTCTTA 5596 .......... .......... .......... .......... .......... .......... 260 GATCCGCCCC TGGCTCATTT GATTATGATT TCAAATATTG ACTACTGTAA ACTATAATTA 5656 .......... .......... .......... .......... .......... .......... 260 TATTATCTTG TATGTCCTTT TTAAGTATTT AAATCTTATT CTAAAAGTTC AAGGAAATGA 5716 .......... .......... .......... .......... .......... .......... 260 AATGAATTTG TTCTTTCAAA CCCCACAATT TTAATCACAA AGGGTGGAGT TATACATAAA 5776 .......... .......... .......... .......... .......... .......... 260 AAAGTTGGCG AAAGATTCCT CTTGGCAGCA AAGAGAATGT TCATTGTTTC TGGTTGTAAT 5836 .......... .......... .......... .......... .......... .......... 260 CCCTGATGTG AATTTTTGTA GGAAATCAAA GTTATACCGA TTTGACAAGG AAGGGAGTCA 5896 ||||||||| |||||||||| |||||||| | |||||||||| .......... .......... .GAAATCAAA GTTATACCGA TTTGACAAAG AAGGGAGTCA 299 ATGGAAAGAG AGAGGTGTTG GGACTGTGAA GCTTCTCAAG CACAAGGAAA CTGGAAAGGT 5956 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATGGAAAGAG AGAGGTGTTG GGACTGTGAA GCTTCTCAAG CACAAAGAAA CTGGAAAGGT 359 TAGGCTTGTG ATGAGGCAAT CCAAGACGCT GAAAATCTGT GCCAACCACT TGGGTCAGAA 6016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TAGGCTTGTG ATGAGGCAAT CCAAGACGCT GAAAATCTGT GCCAACCACT TGG....... 412 TCCTTCTTTT CCAATTCTCT TGATTGTTGA TTTCCCTTAT TGGTTTTTCT ATGTTTTGTT 6076 .......... .......... .......... .......... .......... .......... 412 AATGTTTGTG GTTGTATTTA TTCTGAGCTG CTGTTTGATA AAATCTTGTG TGTAGTCCTT 6136 |||| .......... .......... .......... .......... .......... .....GCCTT 417 CCTACTATGT CGATCCAAGA ACATGCTGGG AATGAGAAGT CTTGTGTGTG GCATGCTGCT 6196 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CCTACTATGT CGATCCAAGA ACATGCTGGG AATGAGAAGT CTTGAGTGTG GCATGCTGCT 477 GACTTTGCTG ATGGAGAACT GAAAGATGAG ACTTTTTGCA TCCGCTTTGC TTCAGTTGAG 6256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTTGCTG ATGGAGAACT GAAAGATGAG ACTTTTTGCA TCCGCTTTGC TTCAGTTGAG 537 AGTGAGTAAT CTGTTTATGC ATCTTTTGGG TATTATTATT GTGCCTTTAG TTAAGATATG 6316 | A......... .......... .......... .......... .......... .......... 538 CTTTTTGAGC TATTTGTCTT CTCCTATGCG TATGTAACAC TTGAAAGTCA TTGTGATAGG 6376 .......... .......... .......... .......... .......... .......... 538 ATTTCCATAT GCTATTTGAA ATCTTCTATT TTCAATCAAC ATGTGATTTA TCAATTGATA 6436 .......... .......... .......... .......... .......... .......... 538 AAGATGAAAA ATGAAATAAG CTCACCACTT CCACAGGGTG GATCATTAGT TAAATTACAT 6496 .......... .......... .......... .......... .......... .......... 538 ACAATTGATG GTGTTGTTTC TAAGTAGTTT AGAGTGCCCT AATTTGTATT AGAAGAAGTG 6556 .......... .......... .......... .......... .......... .......... 538 ATTTAGTATT GAAATAAAAT GGTCCCAAAC AGAATGGAAT GGATATTGAG GATTTATATT 6616 .......... .......... .......... .......... .......... .......... 538 GCCAAGTCCA ACCATACCAA AGAATGGTGT TTGTCATTGG TACTCAGTGC ACATTTAGGT 6676 .......... .......... .......... .......... .......... .......... 538 TATTGATTAT GATATGTTGA ATGATGGTAA TTAGCTTAAT TATGTGGCAC ACACTCCATA 6736 .......... .......... .......... .......... .......... .......... 538 CATCCATGAG TTATACTCTT GTTAGTGCTT CTTCAGGAGT TGTCTTAACT AATTTCCCCT 6796 .......... .......... .......... .......... .......... .......... 538 GAAGATGGCT GAAATATCTT GGATGGTGGG TTATGTCATG CGATATTTGA TACTCACCAC 6856 .......... .......... .......... .......... .......... .......... 538 TCTTTAATTG AGGTTGATGT ATTGGGAATC AGAAACTAAT TTCCTTGATG TATTCTTTAC 6916 .......... .......... .......... .......... .......... .......... 538 TTGTAAATCA CAAATTATGA GCTTCTTATT ACAGTGTGAT TACTAATTAA TGGCTTACAC 6976 .......... .......... .......... .......... .......... .......... 538 AAACTCCTTG AGTACATTCA TGAAACTTAG TTGCATTCCT TGCATGGGCT GTAATCCTGC 7036 .......... .......... .......... .......... .......... .......... 538 AAGTCATCTT AAATCAACAC TGAACAACTG TTTAGGATTA CTCCAGATTT GTAGAACCAA 7096 .......... .......... .......... .......... .......... .......... 538 GTTGAATTAG ATGTTTGGAA CAATTCTTAA CATTACCCCT GTTTTTCAAA ACCAGATTTT 7156 .......... .......... .......... .......... .......... .......... 538 TAACTTTATT TTAATCTTGT CTGTCAGATT GCAAGGCTTT CAAAGAGAAG GTTGAAGAAA 7216 ||| |||||||||| || ||||||| |||||||||| .......... .......... .......ATT GCAAGGCTTT CATAGAGAAG GTTGAAGAAA 571 TTGCTGAATC TCAACAGACA AAGTCTGGAC AAAGTGAAGA AGCTGGTGCT GCTGCTACTG 7276 |||||||||| |||||||||| | ||||||| ||||||||| |||||| ||| |||||||||| TTGCTGAATC TCAACAGACA ATGTCTGGAN CAAGTGAAGA AGCTGGAGCT GCTGCTACTG 631 AACTTATTGA AAAGCT 7292 |||||| ||| |||||| AACTTACTGA AAAGCT 647 hqPGS_C08HBa0167P18.1+_SGN-E328740+ (4817 5074,5858 6009,6132 6257,7184 7292) ******************************************************************************** EST sequence 4 +strand 331 n (File: SGN-E338185+) 1 TTGTTCTTCT TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA 61 TGGCAAGCAC TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG 121 TAGAAGAAAA CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA 181 GGCTACAAGA AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCTGA 241 AATCAAAGTT ATACCGATTT GACAAGGAAG GGAGTCAATG GAAAGAGAGA GGTGTTGGGA 301 CTGTGAAGCT TCTCAAGCAC AAGGAAACTG G Predicted gene structure (within gDNA segment 4237 to 6560): Exon 1 4837 5074 ( 238 n); cDNA 1 238 ( 238 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 5950 ( 93 n); cDNA 239 331 ( 93 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E338185+ 1.000 331 1.000 C PGS_C08HBa0167P18.1+_SGN-E338185+ (4837 5074,5858 5950) Alignment (genomic DNA sequence = upper lines): TTGTTCTTCT TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA 4896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCTTCT TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA 60 TGGCAAGCAC TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG 4956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAGCAC TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG 120 TAGAAGAAAA CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA 5016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGAAAA CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA 180 GGCTACAAGA AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCTGT 5076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGCTACAAGA AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCT.. 238 TAGTAACTCT TTTCTCTATG TCTTCATTTT TTCCAAAATC AAGCTTTAAT TTCTTCATCC 5136 .......... .......... .......... .......... .......... .......... 238 AGTGCTTGAT CTGGTAGTAA AGCTTTGATT TTTCTGAAAA TGATTTGTAG ATGTAAAGAA 5196 .......... .......... .......... .......... .......... .......... 238 TCTATTATCC TTATTTCAGA ATGATCAATG TACTAAGTCT CAATTCCAAA GTATTTATCC 5256 .......... .......... .......... .......... .......... .......... 238 CACTCGATGT GATAGCTATA TGCTAAAATA GCTACTATTG TTTTTTTCCT TTGATTACAA 5316 .......... .......... .......... .......... .......... .......... 238 ACGACTCTGT TGGGGTCGGC TCTATGAATC TATAACTAAT CATGTTATTT CATCCCGTGG 5376 .......... .......... .......... .......... .......... .......... 238 TGGATCCAGG ATTTTTAGTA AGGGGTTGGA AAAAATTAAA AATGTAGTTC TTGGGATTTG 5436 .......... .......... .......... .......... .......... .......... 238 AACTTAGAGC CTCAAGGTAA TTTTGAACCT TCTGAGCCAT TGATTCGAAC TCTAGTATTG 5496 .......... .......... .......... .......... .......... .......... 238 TGTTGAGGGG ATTTGTAGTC TATATTTGTA CACTATTTTT TTTTAAAAAA ACCCTTATAA 5556 .......... .......... .......... .......... .......... .......... 238 TGTAGTGTCA TTATTTTGCG AGGGTGTTCG GATCCTCTTA GATCCGCCCC TGGCTCATTT 5616 .......... .......... .......... .......... .......... .......... 238 GATTATGATT TCAAATATTG ACTACTGTAA ACTATAATTA TATTATCTTG TATGTCCTTT 5676 .......... .......... .......... .......... .......... .......... 238 TTAAGTATTT AAATCTTATT CTAAAAGTTC AAGGAAATGA AATGAATTTG TTCTTTCAAA 5736 .......... .......... .......... .......... .......... .......... 238 CCCCACAATT TTAATCACAA AGGGTGGAGT TATACATAAA AAAGTTGGCG AAAGATTCCT 5796 .......... .......... .......... .......... .......... .......... 238 CTTGGCAGCA AAGAGAATGT TCATTGTTTC TGGTTGTAAT CCCTGATGTG AATTTTTGTA 5856 .......... .......... .......... .......... .......... .......... 238 GGAAATCAAA GTTATACCGA TTTGACAAGG AAGGGAGTCA ATGGAAAGAG AGAGGTGTTG 5916 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAAATCAAA GTTATACCGA TTTGACAAGG AAGGGAGTCA ATGGAAAGAG AGAGGTGTTG 297 GGACTGTGAA GCTTCTCAAG CACAAGGAAA CTGG 5950 |||||||||| |||||||||| |||||||||| |||| GGACTGTGAA GCTTCTCAAG CACAAGGAAA CTGG 331 hqPGS_C08HBa0167P18.1+_SGN-E338185+ (4837 5074,5858 5950) ******************************************************************************** EST sequence 26 +strand 711 n (File: SGN-E343740+) 1 TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA TGGCAAGCAC 61 TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG TAGAAGAAAA 121 CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA GGCTACAAGA 181 AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCTGA AATCAAAGTT 241 ATACCGATTT GACAAGGAAG GGAGTCAATG GAAAGAGAGA GGTGTTGGGA CTGTGAAGCT 301 TCTCAAGCAC AAGGAAACTG GAAAGGTTAG GCTTGTGATG AGGCAATCCA AGACGCTGAA 361 AATCTGTGCC AACCACTTGG TCCTTCCTAC TATGTCGATC CAAGAACATG CTGGGAATGA 421 GAAGTCTTGT GTGTGGCATG CTGCTGACTT TGCTGATGGA GAACTGAAAG ATGAGACTTT 481 TTGCATCCGC TTTGCTTCAG TTGAGAATTG CAAGGCTTTC AAAGAGAAGG TTGAAGAAAT 541 TGCTGAATCT CAACAGACAA AGTCTGGACA AAGTGAAGAA GCTGGTGCTG CTGCTACTGA 601 ACTTATTGAA AAGCTTAGTG TTGAAAGCAA AGATAAAAAT GACAAACCTG AAGACAAAGA 661 GGCCCCTGCA GCTACAGAGG AAAAGGAAGA TAAGAAGGAA GAGAAAGCTG A Predicted gene structure (within gDNA segment 4247 to 7998): Exon 1 4847 5074 ( 228 n); cDNA 1 228 ( 228 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 6009 ( 152 n); cDNA 229 380 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 1.00) Exon 3 6132 6257 ( 126 n); cDNA 381 506 ( 126 n); score: 1.000 Intron 3 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 7184 7388 ( 205 n); cDNA 507 711 ( 205 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E343740+ 1.000 711 1.000 C PGS_C08HBa0167P18.1+_SGN-E343740+ (4847 5074,5858 6009,6132 6257,7184 7388) Alignment (genomic DNA sequence = upper lines): TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA TGGCAAGCAC 4906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCAA ATCCGCCGTA AATCTTTCTA AAACCAAAAA TCTAGAGTGA TGGCAAGCAC 60 TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG TAGAAGAAAA 4966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGTTGAA CCCAAATTGG AGAAGAAAGA AGAGGAAGTA GAAGCAGAAG TAGAAGAAAA 120 CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA GGCTACAAGA 5026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAACTGGC GATGATGAAG ACACTGGTGC ACAAGTTGCT CCCATTGTTA GGCTACAAGA 180 AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCTGT TAGTAACTCT 5086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGTTGCTGTC TCCACTGGTG AAGAAAATGA ACATGTTCTT CTTGATCT.. .......... 228 TTTCTCTATG TCTTCATTTT TTCCAAAATC AAGCTTTAAT TTCTTCATCC AGTGCTTGAT 5146 .......... .......... .......... .......... .......... .......... 228 CTGGTAGTAA AGCTTTGATT TTTCTGAAAA TGATTTGTAG ATGTAAAGAA TCTATTATCC 5206 .......... .......... .......... .......... .......... .......... 228 TTATTTCAGA ATGATCAATG TACTAAGTCT CAATTCCAAA GTATTTATCC CACTCGATGT 5266 .......... .......... .......... .......... .......... .......... 228 GATAGCTATA TGCTAAAATA GCTACTATTG TTTTTTTCCT TTGATTACAA ACGACTCTGT 5326 .......... .......... .......... .......... .......... .......... 228 TGGGGTCGGC TCTATGAATC TATAACTAAT CATGTTATTT CATCCCGTGG TGGATCCAGG 5386 .......... .......... .......... .......... .......... .......... 228 ATTTTTAGTA AGGGGTTGGA AAAAATTAAA AATGTAGTTC TTGGGATTTG AACTTAGAGC 5446 .......... .......... .......... .......... .......... .......... 228 CTCAAGGTAA TTTTGAACCT TCTGAGCCAT TGATTCGAAC TCTAGTATTG TGTTGAGGGG 5506 .......... .......... .......... .......... .......... .......... 228 ATTTGTAGTC TATATTTGTA CACTATTTTT TTTTAAAAAA ACCCTTATAA TGTAGTGTCA 5566 .......... .......... .......... .......... .......... .......... 228 TTATTTTGCG AGGGTGTTCG GATCCTCTTA GATCCGCCCC TGGCTCATTT GATTATGATT 5626 .......... .......... .......... .......... .......... .......... 228 TCAAATATTG ACTACTGTAA ACTATAATTA TATTATCTTG TATGTCCTTT TTAAGTATTT 5686 .......... .......... .......... .......... .......... .......... 228 AAATCTTATT CTAAAAGTTC AAGGAAATGA AATGAATTTG TTCTTTCAAA CCCCACAATT 5746 .......... .......... .......... .......... .......... .......... 228 TTAATCACAA AGGGTGGAGT TATACATAAA AAAGTTGGCG AAAGATTCCT CTTGGCAGCA 5806 .......... .......... .......... .......... .......... .......... 228 AAGAGAATGT TCATTGTTTC TGGTTGTAAT CCCTGATGTG AATTTTTGTA GGAAATCAAA 5866 ||||||||| .......... .......... .......... .......... .......... .GAAATCAAA 237 GTTATACCGA TTTGACAAGG AAGGGAGTCA ATGGAAAGAG AGAGGTGTTG GGACTGTGAA 5926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATACCGA TTTGACAAGG AAGGGAGTCA ATGGAAAGAG AGAGGTGTTG GGACTGTGAA 297 GCTTCTCAAG CACAAGGAAA CTGGAAAGGT TAGGCTTGTG ATGAGGCAAT CCAAGACGCT 5986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCTCAAG CACAAGGAAA CTGGAAAGGT TAGGCTTGTG ATGAGGCAAT CCAAGACGCT 357 GAAAATCTGT GCCAACCACT TGGGTCAGAA TCCTTCTTTT CCAATTCTCT TGATTGTTGA 6046 |||||||||| |||||||||| ||| GAAAATCTGT GCCAACCACT TGG....... .......... .......... .......... 380 TTTCCCTTAT TGGTTTTTCT ATGTTTTGTT AATGTTTGTG GTTGTATTTA TTCTGAGCTG 6106 .......... .......... .......... .......... .......... .......... 380 CTGTTTGATA AAATCTTGTG TGTAGTCCTT CCTACTATGT CGATCCAAGA ACATGCTGGG 6166 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TCCTT CCTACTATGT CGATCCAAGA ACATGCTGGG 415 AATGAGAAGT CTTGTGTGTG GCATGCTGCT GACTTTGCTG ATGGAGAACT GAAAGATGAG 6226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAGAAGT CTTGTGTGTG GCATGCTGCT GACTTTGCTG ATGGAGAACT GAAAGATGAG 475 ACTTTTTGCA TCCGCTTTGC TTCAGTTGAG AGTGAGTAAT CTGTTTATGC ATCTTTTGGG 6286 |||||||||| |||||||||| |||||||||| | ACTTTTTGCA TCCGCTTTGC TTCAGTTGAG A......... .......... .......... 506 TATTATTATT GTGCCTTTAG TTAAGATATG CTTTTTGAGC TATTTGTCTT CTCCTATGCG 6346 .......... .......... .......... .......... .......... .......... 506 TATGTAACAC TTGAAAGTCA TTGTGATAGG ATTTCCATAT GCTATTTGAA ATCTTCTATT 6406 .......... .......... .......... .......... .......... .......... 506 TTCAATCAAC ATGTGATTTA TCAATTGATA AAGATGAAAA ATGAAATAAG CTCACCACTT 6466 .......... .......... .......... .......... .......... .......... 506 CCACAGGGTG GATCATTAGT TAAATTACAT ACAATTGATG GTGTTGTTTC TAAGTAGTTT 6526 .......... .......... .......... .......... .......... .......... 506 AGAGTGCCCT AATTTGTATT AGAAGAAGTG ATTTAGTATT GAAATAAAAT GGTCCCAAAC 6586 .......... .......... .......... .......... .......... .......... 506 AGAATGGAAT GGATATTGAG GATTTATATT GCCAAGTCCA ACCATACCAA AGAATGGTGT 6646 .......... .......... .......... .......... .......... .......... 506 TTGTCATTGG TACTCAGTGC ACATTTAGGT TATTGATTAT GATATGTTGA ATGATGGTAA 6706 .......... .......... .......... .......... .......... .......... 506 TTAGCTTAAT TATGTGGCAC ACACTCCATA CATCCATGAG TTATACTCTT GTTAGTGCTT 6766 .......... .......... .......... .......... .......... .......... 506 CTTCAGGAGT TGTCTTAACT AATTTCCCCT GAAGATGGCT GAAATATCTT GGATGGTGGG 6826 .......... .......... .......... .......... .......... .......... 506 TTATGTCATG CGATATTTGA TACTCACCAC TCTTTAATTG AGGTTGATGT ATTGGGAATC 6886 .......... .......... .......... .......... .......... .......... 506 AGAAACTAAT TTCCTTGATG TATTCTTTAC TTGTAAATCA CAAATTATGA GCTTCTTATT 6946 .......... .......... .......... .......... .......... .......... 506 ACAGTGTGAT TACTAATTAA TGGCTTACAC AAACTCCTTG AGTACATTCA TGAAACTTAG 7006 .......... .......... .......... .......... .......... .......... 506 TTGCATTCCT TGCATGGGCT GTAATCCTGC AAGTCATCTT AAATCAACAC TGAACAACTG 7066 .......... .......... .......... .......... .......... .......... 506 TTTAGGATTA CTCCAGATTT GTAGAACCAA GTTGAATTAG ATGTTTGGAA CAATTCTTAA 7126 .......... .......... .......... .......... .......... .......... 506 CATTACCCCT GTTTTTCAAA ACCAGATTTT TAACTTTATT TTAATCTTGT CTGTCAGATT 7186 ||| .......... .......... .......... .......... .......... .......ATT 509 GCAAGGCTTT CAAAGAGAAG GTTGAAGAAA TTGCTGAATC TCAACAGACA AAGTCTGGAC 7246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGGCTTT CAAAGAGAAG GTTGAAGAAA TTGCTGAATC TCAACAGACA AAGTCTGGAC 569 AAAGTGAAGA AGCTGGTGCT GCTGCTACTG AACTTATTGA AAAGCTTAGT GTTGAAAGCA 7306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGAAGA AGCTGGTGCT GCTGCTACTG AACTTATTGA AAAGCTTAGT GTTGAAAGCA 629 AAGATAAAAA TGACAAACCT GAAGACAAAG AGGCCCCTGC AGCTACAGAG GAAAAGGAAG 7366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATAAAAA TGACAAACCT GAAGACAAAG AGGCCCCTGC AGCTACAGAG GAAAAGGAAG 689 ATAAGAAGGA AGAGAAAGCT GA 7388 |||||||||| |||||||||| || ATAAGAAGGA AGAGAAAGCT GA 711 hqPGS_C08HBa0167P18.1+_SGN-E343740+ (4847 5074,5858 6009,6132 6257,7184 7388) ******************************************************************************** EST sequence 23 +strand 454 n (File: SGN-E343543+) 1 TAAAACCAAA AATCTAGAGT GATGGCAAGC ACTACTGTTG AACCCAAATT GGAGAAGAAA 61 GAAGAGGAAG TAGAAGCAGA AGTAGAAGAA AACCCAACTG GCGATGATGA AGACACTGGT 121 GCACAAGTTG CTCCCATTGT TAGGCTACAA GAAGTTGCTG TCTCCACTGG TGAAGAAAAT 181 GAACATGTTC TTCTTGATCT GAAATCAAAG TTATACCGAT TTGACAAGGA AGGGAGTCAA 241 TGGAAAGAGA GAGGTGTTGG GACTGTGAAG CTTCTCAAGC ACAAGGAAAC TGGAAAGGTT 301 AGGCTTGTGA TGAGGCAATC CAAGACGCTG AAAATCTGTG CCAACCACTT GGTCCTTCCT 361 ACTATGTCGA TCCAAGAACA TGCTGGGAAT GAGAAGTCTT GTGTGTGGCA TGCTGCTGAC 421 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTT Predicted gene structure (within gDNA segment 4275 to 6843): Exon 1 4875 5074 ( 200 n); cDNA 1 200 ( 200 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 6009 ( 152 n); cDNA 201 352 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 1.00) Exon 3 6132 6233 ( 102 n); cDNA 353 454 ( 102 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E343543+ 1.000 454 1.000 C PGS_C08HBa0167P18.1+_SGN-E343543+ (4875 5074,5858 6009,6132 6233) Alignment (genomic DNA sequence = upper lines): TAAAACCAAA AATCTAGAGT GATGGCAAGC ACTACTGTTG AACCCAAATT GGAGAAGAAA 4934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAACCAAA AATCTAGAGT GATGGCAAGC ACTACTGTTG AACCCAAATT GGAGAAGAAA 60 GAAGAGGAAG TAGAAGCAGA AGTAGAAGAA AACCCAACTG GCGATGATGA AGACACTGGT 4994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGGAAG TAGAAGCAGA AGTAGAAGAA AACCCAACTG GCGATGATGA AGACACTGGT 120 GCACAAGTTG CTCCCATTGT TAGGCTACAA GAAGTTGCTG TCTCCACTGG TGAAGAAAAT 5054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAAGTTG CTCCCATTGT TAGGCTACAA GAAGTTGCTG TCTCCACTGG TGAAGAAAAT 180 GAACATGTTC TTCTTGATCT GTTAGTAACT CTTTTCTCTA TGTCTTCATT TTTTCCAAAA 5114 |||||||||| |||||||||| GAACATGTTC TTCTTGATCT .......... .......... .......... .......... 200 TCAAGCTTTA ATTTCTTCAT CCAGTGCTTG ATCTGGTAGT AAAGCTTTGA TTTTTCTGAA 5174 .......... .......... .......... .......... .......... .......... 200 AATGATTTGT AGATGTAAAG AATCTATTAT CCTTATTTCA GAATGATCAA TGTACTAAGT 5234 .......... .......... .......... .......... .......... .......... 200 CTCAATTCCA AAGTATTTAT CCCACTCGAT GTGATAGCTA TATGCTAAAA TAGCTACTAT 5294 .......... .......... .......... .......... .......... .......... 200 TGTTTTTTTC CTTTGATTAC AAACGACTCT GTTGGGGTCG GCTCTATGAA TCTATAACTA 5354 .......... .......... .......... .......... .......... .......... 200 ATCATGTTAT TTCATCCCGT GGTGGATCCA GGATTTTTAG TAAGGGGTTG GAAAAAATTA 5414 .......... .......... .......... .......... .......... .......... 200 AAAATGTAGT TCTTGGGATT TGAACTTAGA GCCTCAAGGT AATTTTGAAC CTTCTGAGCC 5474 .......... .......... .......... .......... .......... .......... 200 ATTGATTCGA ACTCTAGTAT TGTGTTGAGG GGATTTGTAG TCTATATTTG TACACTATTT 5534 .......... .......... .......... .......... .......... .......... 200 TTTTTTAAAA AAACCCTTAT AATGTAGTGT CATTATTTTG CGAGGGTGTT CGGATCCTCT 5594 .......... .......... .......... .......... .......... .......... 200 TAGATCCGCC CCTGGCTCAT TTGATTATGA TTTCAAATAT TGACTACTGT AAACTATAAT 5654 .......... .......... .......... .......... .......... .......... 200 TATATTATCT TGTATGTCCT TTTTAAGTAT TTAAATCTTA TTCTAAAAGT TCAAGGAAAT 5714 .......... .......... .......... .......... .......... .......... 200 GAAATGAATT TGTTCTTTCA AACCCCACAA TTTTAATCAC AAAGGGTGGA GTTATACATA 5774 .......... .......... .......... .......... .......... .......... 200 AAAAAGTTGG CGAAAGATTC CTCTTGGCAG CAAAGAGAAT GTTCATTGTT TCTGGTTGTA 5834 .......... .......... .......... .......... .......... .......... 200 ATCCCTGATG TGAATTTTTG TAGGAAATCA AAGTTATACC GATTTGACAA GGAAGGGAGT 5894 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GAAATCA AAGTTATACC GATTTGACAA GGAAGGGAGT 237 CAATGGAAAG AGAGAGGTGT TGGGACTGTG AAGCTTCTCA AGCACAAGGA AACTGGAAAG 5954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGAAAG AGAGAGGTGT TGGGACTGTG AAGCTTCTCA AGCACAAGGA AACTGGAAAG 297 GTTAGGCTTG TGATGAGGCA ATCCAAGACG CTGAAAATCT GTGCCAACCA CTTGGGTCAG 6014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTAGGCTTG TGATGAGGCA ATCCAAGACG CTGAAAATCT GTGCCAACCA CTTGG..... 352 AATCCTTCTT TTCCAATTCT CTTGATTGTT GATTTCCCTT ATTGGTTTTT CTATGTTTTG 6074 .......... .......... .......... .......... .......... .......... 352 TTAATGTTTG TGGTTGTATT TATTCTGAGC TGCTGTTTGA TAAAATCTTG TGTGTAGTCC 6134 ||| .......... .......... .......... .......... .......... .......TCC 355 TTCCTACTAT GTCGATCCAA GAACATGCTG GGAATGAGAA GTCTTGTGTG TGGCATGCTG 6194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTACTAT GTCGATCCAA GAACATGCTG GGAATGAGAA GTCTTGTGTG TGGCATGCTG 415 CTGACTTTGC TGATGGAGAA CTGAAAGATG AGACTTTTT 6233 |||||||||| |||||||||| |||||||||| ||||||||| CTGACTTTGC TGATGGAGAA CTGAAAGATG AGACTTTTT 454 hqPGS_C08HBa0167P18.1+_SGN-E343543+ (4875 5074,5858 6009,6132 6233) ******************************************************************************** EST sequence 6 +strand 538 n (File: SGN-E306352+) 1 CCAAATTGGA GAAGAAAGAA GAGGAAGTAG AAGCAGAAGT AGAAGAAAAC CCAACTGGCG 61 ATGATGAAGA CACTGGTGCA CAAGTTGCTC CCATTGTTAG GCTACAAGAA GTTGCTGTCT 121 CCACTGGTGA AGAAAATGAA CATGTTCTTC TTGATCTGAA ATCAAAGTTA TACCGATTTG 181 ACAAGGAAGG GAGTCAATGG AAAGAGAGAG GTGTTGGGAC TGTGAAGCTT CTCAAGCACA 241 AGGAAACTGG AAAGGTTAGG CTTGTGATGA GGCAATCCAA GACGCTGAAA ATCTGTGCCA 301 ACCACTTGGT CCTTCCTACT ATGTCGATCC AAGAACATGC TGGGAATGAG AAGTCTTGTG 361 TGTGGCATGC TGCTGACTTT GCTGATGGAG AACTGAAAGA TGAGACTTTT TGCATCCGCT 421 TTGCTTCAGT TGAGAATTGC AAGGCTTTCA AAGAGAAGGT TGAAGAAATT GCTGAATCTC 481 AACAGACAAA GTCTGGACAA AGTGAAGAAG CTGGTGCTGC TGCTACTGAA CTTATTGA Predicted gene structure (within gDNA segment 4318 to 7896): Exon 1 4918 5074 ( 157 n); cDNA 1 157 ( 157 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 5858 6009 ( 152 n); cDNA 158 309 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.945 (s: 1.00) Exon 3 6132 6257 ( 126 n); cDNA 310 435 ( 126 n); score: 1.000 Intron 3 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 7184 7286 ( 103 n); cDNA 436 538 ( 103 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E306352+ 1.000 538 1.000 C PGS_C08HBa0167P18.1+_SGN-E306352+ (4918 5074,5858 6009,6132 6257,7184 7286) Alignment (genomic DNA sequence = upper lines): CCAAATTGGA GAAGAAAGAA GAGGAAGTAG AAGCAGAAGT AGAAGAAAAC CCAACTGGCG 4977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATTGGA GAAGAAAGAA GAGGAAGTAG AAGCAGAAGT AGAAGAAAAC CCAACTGGCG 60 ATGATGAAGA CACTGGTGCA CAAGTTGCTC CCATTGTTAG GCTACAAGAA GTTGCTGTCT 5037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGAAGA CACTGGTGCA CAAGTTGCTC CCATTGTTAG GCTACAAGAA GTTGCTGTCT 120 CCACTGGTGA AGAAAATGAA CATGTTCTTC TTGATCTGTT AGTAACTCTT TTCTCTATGT 5097 |||||||||| |||||||||| |||||||||| ||||||| CCACTGGTGA AGAAAATGAA CATGTTCTTC TTGATCT... .......... .......... 157 CTTCATTTTT TCCAAAATCA AGCTTTAATT TCTTCATCCA GTGCTTGATC TGGTAGTAAA 5157 .......... .......... .......... .......... .......... .......... 157 GCTTTGATTT TTCTGAAAAT GATTTGTAGA TGTAAAGAAT CTATTATCCT TATTTCAGAA 5217 .......... .......... .......... .......... .......... .......... 157 TGATCAATGT ACTAAGTCTC AATTCCAAAG TATTTATCCC ACTCGATGTG ATAGCTATAT 5277 .......... .......... .......... .......... .......... .......... 157 GCTAAAATAG CTACTATTGT TTTTTTCCTT TGATTACAAA CGACTCTGTT GGGGTCGGCT 5337 .......... .......... .......... .......... .......... .......... 157 CTATGAATCT ATAACTAATC ATGTTATTTC ATCCCGTGGT GGATCCAGGA TTTTTAGTAA 5397 .......... .......... .......... .......... .......... .......... 157 GGGGTTGGAA AAAATTAAAA ATGTAGTTCT TGGGATTTGA ACTTAGAGCC TCAAGGTAAT 5457 .......... .......... .......... .......... .......... .......... 157 TTTGAACCTT CTGAGCCATT GATTCGAACT CTAGTATTGT GTTGAGGGGA TTTGTAGTCT 5517 .......... .......... .......... .......... .......... .......... 157 ATATTTGTAC ACTATTTTTT TTTAAAAAAA CCCTTATAAT GTAGTGTCAT TATTTTGCGA 5577 .......... .......... .......... .......... .......... .......... 157 GGGTGTTCGG ATCCTCTTAG ATCCGCCCCT GGCTCATTTG ATTATGATTT CAAATATTGA 5637 .......... .......... .......... .......... .......... .......... 157 CTACTGTAAA CTATAATTAT ATTATCTTGT ATGTCCTTTT TAAGTATTTA AATCTTATTC 5697 .......... .......... .......... .......... .......... .......... 157 TAAAAGTTCA AGGAAATGAA ATGAATTTGT TCTTTCAAAC CCCACAATTT TAATCACAAA 5757 .......... .......... .......... .......... .......... .......... 157 GGGTGGAGTT ATACATAAAA AAGTTGGCGA AAGATTCCTC TTGGCAGCAA AGAGAATGTT 5817 .......... .......... .......... .......... .......... .......... 157 CATTGTTTCT GGTTGTAATC CCTGATGTGA ATTTTTGTAG GAAATCAAAG TTATACCGAT 5877 |||||||||| |||||||||| .......... .......... .......... .......... GAAATCAAAG TTATACCGAT 177 TTGACAAGGA AGGGAGTCAA TGGAAAGAGA GAGGTGTTGG GACTGTGAAG CTTCTCAAGC 5937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAAGGA AGGGAGTCAA TGGAAAGAGA GAGGTGTTGG GACTGTGAAG CTTCTCAAGC 237 ACAAGGAAAC TGGAAAGGTT AGGCTTGTGA TGAGGCAATC CAAGACGCTG AAAATCTGTG 5997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGAAAC TGGAAAGGTT AGGCTTGTGA TGAGGCAATC CAAGACGCTG AAAATCTGTG 297 CCAACCACTT GGGTCAGAAT CCTTCTTTTC CAATTCTCTT GATTGTTGAT TTCCCTTATT 6057 |||||||||| || CCAACCACTT GG........ .......... .......... .......... .......... 309 GGTTTTTCTA TGTTTTGTTA ATGTTTGTGG TTGTATTTAT TCTGAGCTGC TGTTTGATAA 6117 .......... .......... .......... .......... .......... .......... 309 AATCTTGTGT GTAGTCCTTC CTACTATGTC GATCCAAGAA CATGCTGGGA ATGAGAAGTC 6177 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TCCTTC CTACTATGTC GATCCAAGAA CATGCTGGGA ATGAGAAGTC 355 TTGTGTGTGG CATGCTGCTG ACTTTGCTGA TGGAGAACTG AAAGATGAGA CTTTTTGCAT 6237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTGTGG CATGCTGCTG ACTTTGCTGA TGGAGAACTG AAAGATGAGA CTTTTTGCAT 415 CCGCTTTGCT TCAGTTGAGA GTGAGTAATC TGTTTATGCA TCTTTTGGGT ATTATTATTG 6297 |||||||||| |||||||||| CCGCTTTGCT TCAGTTGAGA .......... .......... .......... .......... 435 TGCCTTTAGT TAAGATATGC TTTTTGAGCT ATTTGTCTTC TCCTATGCGT ATGTAACACT 6357 .......... .......... .......... .......... .......... .......... 435 TGAAAGTCAT TGTGATAGGA TTTCCATATG CTATTTGAAA TCTTCTATTT TCAATCAACA 6417 .......... .......... .......... .......... .......... .......... 435 TGTGATTTAT CAATTGATAA AGATGAAAAA TGAAATAAGC TCACCACTTC CACAGGGTGG 6477 .......... .......... .......... .......... .......... .......... 435 ATCATTAGTT AAATTACATA CAATTGATGG TGTTGTTTCT AAGTAGTTTA GAGTGCCCTA 6537 .......... .......... .......... .......... .......... .......... 435 ATTTGTATTA GAAGAAGTGA TTTAGTATTG AAATAAAATG GTCCCAAACA GAATGGAATG 6597 .......... .......... .......... .......... .......... .......... 435 GATATTGAGG ATTTATATTG CCAAGTCCAA CCATACCAAA GAATGGTGTT TGTCATTGGT 6657 .......... .......... .......... .......... .......... .......... 435 ACTCAGTGCA CATTTAGGTT ATTGATTATG ATATGTTGAA TGATGGTAAT TAGCTTAATT 6717 .......... .......... .......... .......... .......... .......... 435 ATGTGGCACA CACTCCATAC ATCCATGAGT TATACTCTTG TTAGTGCTTC TTCAGGAGTT 6777 .......... .......... .......... .......... .......... .......... 435 GTCTTAACTA ATTTCCCCTG AAGATGGCTG AAATATCTTG GATGGTGGGT TATGTCATGC 6837 .......... .......... .......... .......... .......... .......... 435 GATATTTGAT ACTCACCACT CTTTAATTGA GGTTGATGTA TTGGGAATCA GAAACTAATT 6897 .......... .......... .......... .......... .......... .......... 435 TCCTTGATGT ATTCTTTACT TGTAAATCAC AAATTATGAG CTTCTTATTA CAGTGTGATT 6957 .......... .......... .......... .......... .......... .......... 435 ACTAATTAAT GGCTTACACA AACTCCTTGA GTACATTCAT GAAACTTAGT TGCATTCCTT 7017 .......... .......... .......... .......... .......... .......... 435 GCATGGGCTG TAATCCTGCA AGTCATCTTA AATCAACACT GAACAACTGT TTAGGATTAC 7077 .......... .......... .......... .......... .......... .......... 435 TCCAGATTTG TAGAACCAAG TTGAATTAGA TGTTTGGAAC AATTCTTAAC ATTACCCCTG 7137 .......... .......... .......... .......... .......... .......... 435 TTTTTCAAAA CCAGATTTTT AACTTTATTT TAATCTTGTC TGTCAGATTG CAAGGCTTTC 7197 |||| |||||||||| .......... .......... .......... .......... ......ATTG CAAGGCTTTC 449 AAAGAGAAGG TTGAAGAAAT TGCTGAATCT CAACAGACAA AGTCTGGACA AAGTGAAGAA 7257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAAGG TTGAAGAAAT TGCTGAATCT CAACAGACAA AGTCTGGACA AAGTGAAGAA 509 GCTGGTGCTG CTGCTACTGA ACTTATTGA 7286 |||||||||| |||||||||| ||||||||| GCTGGTGCTG CTGCTACTGA ACTTATTGA 538 hqPGS_C08HBa0167P18.1+_SGN-E306352+ (4918 5074,5858 6009,6132 6257,7184 7286) ******************************************************************************** EST sequence 25 +strand 197 n (File: SGN-E320867+) 1 AAAAAGAAAA GAGGCAAAGT TATCAAATCA AAAACCCTAC TTCCTCCCTT GTTGTTCTTC 61 TTCTTCTTCA AATCCGCCGT AAATCTTTCT AAAACCAAAA ATCTAGAGTG ATGGCAAGCA 121 CTACTGTTGA ACCCAAATTG GAGAAGAAAG AAGAGGAAGT AGAAGCAGAA GTAGAAGAAA 181 ACCCCACTGG CGATGAT Predicted gene structure (within gDNA segment 4186 to 5709): Exon 1 4786 4982 ( 197 n); cDNA 1 197 ( 197 n); score: 0.995 MATCH C08HBa0167P18.1+ SGN-E320867+ 0.995 197 1.000 C PGS_C08HBa0167P18.1+_SGN-E320867+ (4786 4982) Alignment (genomic DNA sequence = upper lines): AAAAAGAAAA GAGGCAAAGT TATCAAATCA AAAACCCTAC TTCCTCCCTT GTTGTTCTTC 4845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGAAAA GAGGCAAAGT TATCAAATCA AAAACCCTAC TTCCTCCCTT GTTGTTCTTC 60 TTCTTCTTCA AATCCGCCGT AAATCTTTCT AAAACCAAAA ATCTAGAGTG ATGGCAAGCA 4905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTTCA AATCCGCCGT AAATCTTTCT AAAACCAAAA ATCTAGAGTG ATGGCAAGCA 120 CTACTGTTGA ACCCAAATTG GAGAAGAAAG AAGAGGAAGT AGAAGCAGAA GTAGAAGAAA 4965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTGTTGA ACCCAAATTG GAGAAGAAAG AAGAGGAAGT AGAAGCAGAA GTAGAAGAAA 180 ACCCAACTGG CGATGAT 4982 |||| ||||| ||||||| ACCCCACTGG CGATGAT 197 hqPGS_C08HBa0167P18.1+_SGN-E320867+ (4786 4982) ******************************************************************************** EST sequence 22 +strand 546 n (File: SGN-E356140+) 1 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAAT 61 TGCAAGGCTT TCAAAGAGAA GGTTGAAGAA ATTGCTGAAT CTCAACAGAC AAAGTCTGGA 121 CAAAGTGAAG AAGCTGGTGC TGCTGCTACT GAACTTATTG AAAAGCTTAG TGTTGAAAGC 181 AAAGATAAAA ATGACAAACC TGAAGACAAA GAGGCCCCTG CAGCTACAGA GGAAAAGGAA 241 GATAAGAAGG AAGAGAAAGC TGAAGAAAAG AATTAAAATG TTTGTATTGT CGGTCAGTTT 301 TTTTTTTTTG AAAGGTTAAT AGCATTCGTT GTTTCTGTCT GATCCAATAG ATATGATAGA 361 TATAAGCAAT GTGTCTCTTG TGGTCTTATT TGTTGTTGTT GGGATGGTTT GGATTTTCAT 421 TTGGGTCTTG AGTCGAGTGC AGCTTCATGT TTTATTGTGG TCTTTGGTGT TTCCTTGTAC 481 TTATTTATTG TGTGTTTGCA AATTTTGGTT CATGGGGGTA CACCACCCAG TATAAAAAAA 541 AAAAAA Predicted gene structure (within gDNA segment 5600 to 8380): Exon 1 6200 6257 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 7184 7660 ( 477 n); cDNA 59 535 ( 477 n); score: 1.000 PPA cDNA 536 546 MATCH C08HBa0167P18.1+ SGN-E356140+ 1.000 535 0.980 C PGS_C08HBa0167P18.1+_SGN-E356140+ (6200 6257,7184 7660) Alignment (genomic DNA sequence = upper lines): TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAGT 6259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGA.. 58 GAGTAATCTG TTTATGCATC TTTTGGGTAT TATTATTGTG CCTTTAGTTA AGATATGCTT 6319 .......... .......... .......... .......... .......... .......... 58 TTTGAGCTAT TTGTCTTCTC CTATGCGTAT GTAACACTTG AAAGTCATTG TGATAGGATT 6379 .......... .......... .......... .......... .......... .......... 58 TCCATATGCT ATTTGAAATC TTCTATTTTC AATCAACATG TGATTTATCA ATTGATAAAG 6439 .......... .......... .......... .......... .......... .......... 58 ATGAAAAATG AAATAAGCTC ACCACTTCCA CAGGGTGGAT CATTAGTTAA ATTACATACA 6499 .......... .......... .......... .......... .......... .......... 58 ATTGATGGTG TTGTTTCTAA GTAGTTTAGA GTGCCCTAAT TTGTATTAGA AGAAGTGATT 6559 .......... .......... .......... .......... .......... .......... 58 TAGTATTGAA ATAAAATGGT CCCAAACAGA ATGGAATGGA TATTGAGGAT TTATATTGCC 6619 .......... .......... .......... .......... .......... .......... 58 AAGTCCAACC ATACCAAAGA ATGGTGTTTG TCATTGGTAC TCAGTGCACA TTTAGGTTAT 6679 .......... .......... .......... .......... .......... .......... 58 TGATTATGAT ATGTTGAATG ATGGTAATTA GCTTAATTAT GTGGCACACA CTCCATACAT 6739 .......... .......... .......... .......... .......... .......... 58 CCATGAGTTA TACTCTTGTT AGTGCTTCTT CAGGAGTTGT CTTAACTAAT TTCCCCTGAA 6799 .......... .......... .......... .......... .......... .......... 58 GATGGCTGAA ATATCTTGGA TGGTGGGTTA TGTCATGCGA TATTTGATAC TCACCACTCT 6859 .......... .......... .......... .......... .......... .......... 58 TTAATTGAGG TTGATGTATT GGGAATCAGA AACTAATTTC CTTGATGTAT TCTTTACTTG 6919 .......... .......... .......... .......... .......... .......... 58 TAAATCACAA ATTATGAGCT TCTTATTACA GTGTGATTAC TAATTAATGG CTTACACAAA 6979 .......... .......... .......... .......... .......... .......... 58 CTCCTTGAGT ACATTCATGA AACTTAGTTG CATTCCTTGC ATGGGCTGTA ATCCTGCAAG 7039 .......... .......... .......... .......... .......... .......... 58 TCATCTTAAA TCAACACTGA ACAACTGTTT AGGATTACTC CAGATTTGTA GAACCAAGTT 7099 .......... .......... .......... .......... .......... .......... 58 GAATTAGATG TTTGGAACAA TTCTTAACAT TACCCCTGTT TTTCAAAACC AGATTTTTAA 7159 .......... .......... .......... .......... .......... .......... 58 CTTTATTTTA ATCTTGTCTG TCAGATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 7219 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 94 CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 154 TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 7339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 214 CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 7399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 274 AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 7459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 334 CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 394 GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 7579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 454 TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 7639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 514 GGGGTACACC ACCCAGTATA A 7660 |||||||||| |||||||||| | GGGGTACACC ACCCAGTATA A 535 hqPGS_C08HBa0167P18.1+_SGN-E356140+ (6200 6257,7184 7660) ******************************************************************************** EST sequence 24 +strand 537 n (File: SGN-E356870+) 1 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAAT 61 TGCAAGGCTT TCAAAGAGAA GGTTGAAGAA ATTGCTGAAT CTCAACAGAC AAAGTCTGGA 121 CAAAGTGAAG AAGCTGGTGC TGCTGCTACT GAACTTATTG AAAAGCTTAG TGTTGAAAGC 181 AAAGATAAAA ATGACAAACC TGAAGACAAA GAGGCCCCTG CAGCTACAGA GGAAAAGGAA 241 GATAAGAAGG AAGAGAAAGC TGAAGAAAAG AATTAAAATG TTTGTATTGT CGGTCAGTTT 301 TTTTTTTTTG AAAGGTTAAT AGCATTCGTT GTTTCTGTCT GATCCAATAG ATATGATAGA 361 TATAAGCAAT GTGTCTCTTG TGGTCTTATT TGTTGTTGTT GGGATGGTTT GGATTTTCAT 421 TTGGGTCTTG AGTCGAGTGC AGCTTCATGT TTTATTGTGG TCTTTGGTGT TTCCTTGTAC 481 TTATTTATTG TGTGTTTGCA AATTTTGGTT CATGGGGGTA CACCACCCAG TATAAAA Predicted gene structure (within gDNA segment 5600 to 8290): Exon 1 6200 6257 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 7184 7660 ( 477 n); cDNA 59 535 ( 477 n); score: 1.000 MATCH C08HBa0167P18.1+ SGN-E356870+ 1.000 535 0.996 C PGS_C08HBa0167P18.1+_SGN-E356870+ (6200 6257,7184 7660) Alignment (genomic DNA sequence = upper lines): TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAGT 6259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGA.. 58 GAGTAATCTG TTTATGCATC TTTTGGGTAT TATTATTGTG CCTTTAGTTA AGATATGCTT 6319 .......... .......... .......... .......... .......... .......... 58 TTTGAGCTAT TTGTCTTCTC CTATGCGTAT GTAACACTTG AAAGTCATTG TGATAGGATT 6379 .......... .......... .......... .......... .......... .......... 58 TCCATATGCT ATTTGAAATC TTCTATTTTC AATCAACATG TGATTTATCA ATTGATAAAG 6439 .......... .......... .......... .......... .......... .......... 58 ATGAAAAATG AAATAAGCTC ACCACTTCCA CAGGGTGGAT CATTAGTTAA ATTACATACA 6499 .......... .......... .......... .......... .......... .......... 58 ATTGATGGTG TTGTTTCTAA GTAGTTTAGA GTGCCCTAAT TTGTATTAGA AGAAGTGATT 6559 .......... .......... .......... .......... .......... .......... 58 TAGTATTGAA ATAAAATGGT CCCAAACAGA ATGGAATGGA TATTGAGGAT TTATATTGCC 6619 .......... .......... .......... .......... .......... .......... 58 AAGTCCAACC ATACCAAAGA ATGGTGTTTG TCATTGGTAC TCAGTGCACA TTTAGGTTAT 6679 .......... .......... .......... .......... .......... .......... 58 TGATTATGAT ATGTTGAATG ATGGTAATTA GCTTAATTAT GTGGCACACA CTCCATACAT 6739 .......... .......... .......... .......... .......... .......... 58 CCATGAGTTA TACTCTTGTT AGTGCTTCTT CAGGAGTTGT CTTAACTAAT TTCCCCTGAA 6799 .......... .......... .......... .......... .......... .......... 58 GATGGCTGAA ATATCTTGGA TGGTGGGTTA TGTCATGCGA TATTTGATAC TCACCACTCT 6859 .......... .......... .......... .......... .......... .......... 58 TTAATTGAGG TTGATGTATT GGGAATCAGA AACTAATTTC CTTGATGTAT TCTTTACTTG 6919 .......... .......... .......... .......... .......... .......... 58 TAAATCACAA ATTATGAGCT TCTTATTACA GTGTGATTAC TAATTAATGG CTTACACAAA 6979 .......... .......... .......... .......... .......... .......... 58 CTCCTTGAGT ACATTCATGA AACTTAGTTG CATTCCTTGC ATGGGCTGTA ATCCTGCAAG 7039 .......... .......... .......... .......... .......... .......... 58 TCATCTTAAA TCAACACTGA ACAACTGTTT AGGATTACTC CAGATTTGTA GAACCAAGTT 7099 .......... .......... .......... .......... .......... .......... 58 GAATTAGATG TTTGGAACAA TTCTTAACAT TACCCCTGTT TTTCAAAACC AGATTTTTAA 7159 .......... .......... .......... .......... .......... .......... 58 CTTTATTTTA ATCTTGTCTG TCAGATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 7219 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 94 CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 154 TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 7339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 214 CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 7399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 274 AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 7459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 334 CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 394 GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 7579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 454 TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 7639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 514 GGGGTACACC ACCCAGTATA A 7660 |||||||||| |||||||||| | GGGGTACACC ACCCAGTATA A 535 hqPGS_C08HBa0167P18.1+_SGN-E356870+ (6200 6257,7184 7660) ******************************************************************************** EST sequence 28 +strand 548 n (File: SGN-E355454+) 1 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAAT 61 TGCAAGGCTT TCAAAGAGAA GGTTGAAGAA ATTGCTGAAT CTCAACAGAC AAAGTCTGGA 121 CAAAGTGAAG AAGCTGGTGC TGCTGCTACT GAACTTATTG AAAAGCTTAG TGTTGAAAGC 181 AAAGATAAAA ATGACAAACC TGAAGACAAA GAGGCCCCTG CAGCTACAGA GGAAAAGGAA 241 GATAAGAAGG AAGAGAAAGC TGAAGAAAAG AATTAAAATG TTTGTATTGT CGGTCAGTTT 301 TTTTTTTTTG AAAGGTTAAT AGCATTCGTT GTTTCTGTCT GATCCAATAG ATATGATAGA 361 TATAAGCAAT GTGTCTCTTG TGGTCTTATT TGTTGTTGTT GGGATGGTTT GGATTTTCAT 421 TTGGGTCTTG AGTCGAGTGC AGCTTCATGT TTTATTGTGG TCTTTGGTGT TTCCTTGTAC 481 TTATTTATTG TGTGTTTGCA AATTTTGGTT CATGGGGGTA CACCACCCAG TATAAAAAAA 541 AAAAAAAA Predicted gene structure (within gDNA segment 5600 to 8400): Exon 1 6200 6257 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 7184 7660 ( 477 n); cDNA 59 535 ( 477 n); score: 1.000 PPA cDNA 536 548 MATCH C08HBa0167P18.1+ SGN-E355454+ 1.000 535 0.976 C PGS_C08HBa0167P18.1+_SGN-E355454+ (6200 6257,7184 7660) Alignment (genomic DNA sequence = upper lines): TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAGT 6259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGA.. 58 GAGTAATCTG TTTATGCATC TTTTGGGTAT TATTATTGTG CCTTTAGTTA AGATATGCTT 6319 .......... .......... .......... .......... .......... .......... 58 TTTGAGCTAT TTGTCTTCTC CTATGCGTAT GTAACACTTG AAAGTCATTG TGATAGGATT 6379 .......... .......... .......... .......... .......... .......... 58 TCCATATGCT ATTTGAAATC TTCTATTTTC AATCAACATG TGATTTATCA ATTGATAAAG 6439 .......... .......... .......... .......... .......... .......... 58 ATGAAAAATG AAATAAGCTC ACCACTTCCA CAGGGTGGAT CATTAGTTAA ATTACATACA 6499 .......... .......... .......... .......... .......... .......... 58 ATTGATGGTG TTGTTTCTAA GTAGTTTAGA GTGCCCTAAT TTGTATTAGA AGAAGTGATT 6559 .......... .......... .......... .......... .......... .......... 58 TAGTATTGAA ATAAAATGGT CCCAAACAGA ATGGAATGGA TATTGAGGAT TTATATTGCC 6619 .......... .......... .......... .......... .......... .......... 58 AAGTCCAACC ATACCAAAGA ATGGTGTTTG TCATTGGTAC TCAGTGCACA TTTAGGTTAT 6679 .......... .......... .......... .......... .......... .......... 58 TGATTATGAT ATGTTGAATG ATGGTAATTA GCTTAATTAT GTGGCACACA CTCCATACAT 6739 .......... .......... .......... .......... .......... .......... 58 CCATGAGTTA TACTCTTGTT AGTGCTTCTT CAGGAGTTGT CTTAACTAAT TTCCCCTGAA 6799 .......... .......... .......... .......... .......... .......... 58 GATGGCTGAA ATATCTTGGA TGGTGGGTTA TGTCATGCGA TATTTGATAC TCACCACTCT 6859 .......... .......... .......... .......... .......... .......... 58 TTAATTGAGG TTGATGTATT GGGAATCAGA AACTAATTTC CTTGATGTAT TCTTTACTTG 6919 .......... .......... .......... .......... .......... .......... 58 TAAATCACAA ATTATGAGCT TCTTATTACA GTGTGATTAC TAATTAATGG CTTACACAAA 6979 .......... .......... .......... .......... .......... .......... 58 CTCCTTGAGT ACATTCATGA AACTTAGTTG CATTCCTTGC ATGGGCTGTA ATCCTGCAAG 7039 .......... .......... .......... .......... .......... .......... 58 TCATCTTAAA TCAACACTGA ACAACTGTTT AGGATTACTC CAGATTTGTA GAACCAAGTT 7099 .......... .......... .......... .......... .......... .......... 58 GAATTAGATG TTTGGAACAA TTCTTAACAT TACCCCTGTT TTTCAAAACC AGATTTTTAA 7159 .......... .......... .......... .......... .......... .......... 58 CTTTATTTTA ATCTTGTCTG TCAGATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 7219 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 94 CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 154 TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 7339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 214 CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 7399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 274 AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 7459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 334 CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 394 GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 7579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT TCATGTTTTA 454 TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 7639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT TTGGTTCATG 514 GGGGTACACC ACCCAGTATA A 7660 |||||||||| |||||||||| | GGGGTACACC ACCCAGTATA A 535 hqPGS_C08HBa0167P18.1+_SGN-E355454+ (6200 6257,7184 7660) ******************************************************************************** EST sequence 30 +strand 429 n (File: SGN-E349108+) 1 TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAAT 61 TGCAAGGCTT TCAAAGAGAA GGTTGAAGAA ATTGCTGAAT CTCAACAGAC AAAGTCTGGA 121 CAAAGTGAAG AAGCTGGTGC TGCTGCTACT GAACTTATTG AAAAGCTTAG TGTTGAAAGC 181 AAAGATAAAA ATGACAAACC TGAAGACAAA GAGGCCCCTG CAGCTACAGA GGAAAAGGAA 241 GATAAGAAGG AAGAGAAAGC TGAAGAAAAG AATTAAAATG TTTGTATTGT CGGTCAGTTT 301 TTTTTTTTTG AAAGGTTAAT AGCATTCGTT GTTTCTGTCT GATCCAATAG ATATGATAGA 361 TATAAGCAAT GTGTCTCTTG TGGTCTTATT TGTTGTTGGT GGGATGGTTG GGATTTTCAT 421 TTGGGTCTT Predicted gene structure (within gDNA segment 5600 to 8164): Exon 1 6200 6257 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 6258 7183 ( 926 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 7184 7554 ( 371 n); cDNA 59 429 ( 371 n); score: 0.995 MATCH C08HBa0167P18.1+ SGN-E349108+ 0.995 429 1.000 C PGS_C08HBa0167P18.1+_SGN-E349108+ (6200 6257,7184 7554) Alignment (genomic DNA sequence = upper lines): TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGAGT 6259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGCTGATG GAGAACTGAA AGATGAGACT TTTTGCATCC GCTTTGCTTC AGTTGAGA.. 58 GAGTAATCTG TTTATGCATC TTTTGGGTAT TATTATTGTG CCTTTAGTTA AGATATGCTT 6319 .......... .......... .......... .......... .......... .......... 58 TTTGAGCTAT TTGTCTTCTC CTATGCGTAT GTAACACTTG AAAGTCATTG TGATAGGATT 6379 .......... .......... .......... .......... .......... .......... 58 TCCATATGCT ATTTGAAATC TTCTATTTTC AATCAACATG TGATTTATCA ATTGATAAAG 6439 .......... .......... .......... .......... .......... .......... 58 ATGAAAAATG AAATAAGCTC ACCACTTCCA CAGGGTGGAT CATTAGTTAA ATTACATACA 6499 .......... .......... .......... .......... .......... .......... 58 ATTGATGGTG TTGTTTCTAA GTAGTTTAGA GTGCCCTAAT TTGTATTAGA AGAAGTGATT 6559 .......... .......... .......... .......... .......... .......... 58 TAGTATTGAA ATAAAATGGT CCCAAACAGA ATGGAATGGA TATTGAGGAT TTATATTGCC 6619 .......... .......... .......... .......... .......... .......... 58 AAGTCCAACC ATACCAAAGA ATGGTGTTTG TCATTGGTAC TCAGTGCACA TTTAGGTTAT 6679 .......... .......... .......... .......... .......... .......... 58 TGATTATGAT ATGTTGAATG ATGGTAATTA GCTTAATTAT GTGGCACACA CTCCATACAT 6739 .......... .......... .......... .......... .......... .......... 58 CCATGAGTTA TACTCTTGTT AGTGCTTCTT CAGGAGTTGT CTTAACTAAT TTCCCCTGAA 6799 .......... .......... .......... .......... .......... .......... 58 GATGGCTGAA ATATCTTGGA TGGTGGGTTA TGTCATGCGA TATTTGATAC TCACCACTCT 6859 .......... .......... .......... .......... .......... .......... 58 TTAATTGAGG TTGATGTATT GGGAATCAGA AACTAATTTC CTTGATGTAT TCTTTACTTG 6919 .......... .......... .......... .......... .......... .......... 58 TAAATCACAA ATTATGAGCT TCTTATTACA GTGTGATTAC TAATTAATGG CTTACACAAA 6979 .......... .......... .......... .......... .......... .......... 58 CTCCTTGAGT ACATTCATGA AACTTAGTTG CATTCCTTGC ATGGGCTGTA ATCCTGCAAG 7039 .......... .......... .......... .......... .......... .......... 58 TCATCTTAAA TCAACACTGA ACAACTGTTT AGGATTACTC CAGATTTGTA GAACCAAGTT 7099 .......... .......... .......... .......... .......... .......... 58 GAATTAGATG TTTGGAACAA TTCTTAACAT TACCCCTGTT TTTCAAAACC AGATTTTTAA 7159 .......... .......... .......... .......... .......... .......... 58 CTTTATTTTA ATCTTGTCTG TCAGATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 7219 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTGCA AGGCTTTCAA AGAGAAGGTT GAAGAAATTG 94 CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAATCTCA ACAGACAAAG TCTGGACAAA GTGAAGAAGC TGGTGCTGCT GCTACTGAAC 154 TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 7339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAAA GCTTAGTGTT GAAAGCAAAG ATAAAAATGA CAAACCTGAA GACAAAGAGG 214 CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 7399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA GAAAAGAATT 274 AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 7459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA TTCGTTGTTT 334 CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT CTTATTTGTT 394 GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTT 7554 |||| ||||| ||||| |||| |||||||||| ||||| GTTGGTGGGA TGGTTGGGAT TTTCATTTGG GTCTT 429 hqPGS_C08HBa0167P18.1+_SGN-E349108+ (6200 6257,7184 7554) ******************************************************************************** EST sequence 42 -strand 540 n (File: SGN-E266461-) 1 TTTGCATCCG CTTTGCTTCA GTTCAGCATT GCAAGGCTTT CAAAGAGAAG GTTGAAGAAA 61 TTGCTGAATC TCAACAGACA AAGTCTGGAC AAAGTAAAGA AGCTGGTGCT GCTGCTACTG 121 AACTTATTGA AAAGCTTAGT GTTGAAAGCA AAGATATTAA TGCCATACCT GAAGACAAAG 181 AGGCCCCTGC AGCTACAGAG GAAAAGCAAG ATAAGAAGGA AGAGTCAGCT GAAGCAAAGA 241 ATTAAAATGT TTGTATTGTC GGTCAGTTTT TTTTTTTTGA AAGGTTAAGA GCATTCGTTG 301 TTTCTGTCTG ATCCAATAGA TATGATAGAT ATAAGCAATG TGTCTCTTGT GGTCTTATTT 361 GTTGTTGTTG GGATGGTTTG GATTTTCATT TGGGTCTTGA GTCGAGTGCA GCTTCATGTT 421 TTATTGTGGT CTCTGGTGTT TCCTTGTACT TATTTATTGT GTGTTTGCAA ATTTTGGTTC 481 ATGGGGGTCC ACCCCCCAGT ATAAGGGATT ACGTTTGTTA AAAAAAAAAA AAAAAAACTC Predicted gene structure (within gDNA segment 6304 to 8449): Exon 1 7184 7679 ( 496 n); cDNA 28 523 ( 496 n); score: 0.974 PPA cDNA 524 538 MATCH C08HBa0167P18.1+ SGN-E266461- 0.974 496 0.919 C PGS_C08HBa0167P18.1+_SGN-E266461- (7184 7679) Alignment (genomic DNA sequence = upper lines): ATTGCAAGGC TTTCAAAGAG AAGGTTGAAG AAATTGCTGA ATCTCAACAG ACAAAGTCTG 7243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAAGGC TTTCAAAGAG AAGGTTGAAG AAATTGCTGA ATCTCAACAG ACAAAGTCTG 87 GACAAAGTGA AGAAGCTGGT GCTGCTGCTA CTGAACTTAT TGAAAAGCTT AGTGTTGAAA 7303 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGTAA AGAAGCTGGT GCTGCTGCTA CTGAACTTAT TGAAAAGCTT AGTGTTGAAA 147 GCAAAGATAA AAATGACAAA CCTGAAGACA AAGAGGCCCC TGCAGCTACA GAGGAAAAGG 7363 ||||||||| |||| || | |||||||||| |||||||||| |||||||||| ||||||||| GCAAAGATAT TAATGCCATA CCTGAAGACA AAGAGGCCCC TGCAGCTACA GAGGAAAAGC 207 AAGATAAGAA GGAAGAGAAA GCTGAAGAAA AGAATTAAAA TGTTTGTATT GTCGGTCAGT 7423 |||||||||| ||||||| | ||||||| || |||||||||| |||||||||| |||||||||| AAGATAAGAA GGAAGAGTCA GCTGAAGCAA AGAATTAAAA TGTTTGTATT GTCGGTCAGT 267 TTTTTTTTTT TGAAAGGTTA ATAGCATTCG TTGTTTCTGT CTGATCCAAT AGATATGATA 7483 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TGAAAGGTTA AGAGCATTCG TTGTTTCTGT CTGATCCAAT AGATATGATA 327 GATATAAGCA ATGTGTCTCT TGTGGTCTTA TTTGTTGTTG TTGGGATGGT TTGGATTTTC 7543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATAAGCA ATGTGTCTCT TGTGGTCTTA TTTGTTGTTG TTGGGATGGT TTGGATTTTC 387 ATTTGGGTCT TGAGTCGAGT GCAGCTTCAT GTTTTATTGT GGTCTTTGGT GTTTCCTTGT 7603 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATTTGGGTCT TGAGTCGAGT GCAGCTTCAT GTTTTATTGT GGTCTCTGGT GTTTCCTTGT 447 ACTTATTTAT TGTGTGTTTG CAAATTTTGG TTCATGGGGG TACACCACCC AGTATAAGGG 7663 |||||||||| |||||||||| |||||||||| |||||||||| | |||| ||| |||||||||| ACTTATTTAT TGTGTGTTTG CAAATTTTGG TTCATGGGGG TCCACCCCCC AGTATAAGGG 507 ATTACGTTTG TTAAAA 7679 |||||||||| |||||| ATTACGTTTG TTAAAA 523 hqPGS_C08HBa0167P18.1+_SGN-E266461- (7184 7679) ******************************************************************************** EST sequence 39 -strand 443 n (File: SGN-E224363-) 1 GCTGGTGCTG CTGCTACTGA ACTTATTGAA AAGCTTAGTG TTGAAAGCAA AGATAAAAAT 61 GACAAACCTG AAGACAAAGA GGCCCCTGCA GCTACAGAGG AAAAGGAAGA TAAGAAGGAA 121 GAGAAAGCTG AAGAAAAGAA TTAAAATGTT TGTATTGTCG GTCAGTTTTT TTTTTTTGAA 181 AGGTTAATAG CATTCGTTGT TTCTGTCTGA TCCAATAGAT ATGATAGATA TAAGCAATGT 241 GTCTCATGTG GTCTTATTTG TTGTTGTTGG GATGGTTTGG ATTTTCATTT GGGTCTTGAG 301 TCGAGTGCAG CTTCATGTTT TATTGTGGTC TTTGGTGTTT CCTTGTACTT ATTTATTGTG 361 TGTTTGCAAA TTTTGGTTCA TGGGGGTACA CCACCCAGTA TAAGGGATTA CGTTTGTTAA 421 AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 6648 to 8489): Exon 1 7258 7679 ( 422 n); cDNA 1 422 ( 422 n); score: 0.998 PPA cDNA 423 443 MATCH C08HBa0167P18.1+ SGN-E224363- 0.998 422 0.953 C PGS_C08HBa0167P18.1+_SGN-E224363- (7258 7679) Alignment (genomic DNA sequence = upper lines): GCTGGTGCTG CTGCTACTGA ACTTATTGAA AAGCTTAGTG TTGAAAGCAA AGATAAAAAT 7317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTGCTG CTGCTACTGA ACTTATTGAA AAGCTTAGTG TTGAAAGCAA AGATAAAAAT 60 GACAAACCTG AAGACAAAGA GGCCCCTGCA GCTACAGAGG AAAAGGAAGA TAAGAAGGAA 7377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAACCTG AAGACAAAGA GGCCCCTGCA GCTACAGAGG AAAAGGAAGA TAAGAAGGAA 120 GAGAAAGCTG AAGAAAAGAA TTAAAATGTT TGTATTGTCG GTCAGTTTTT TTTTTTTGAA 7437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGCTG AAGAAAAGAA TTAAAATGTT TGTATTGTCG GTCAGTTTTT TTTTTTTGAA 180 AGGTTAATAG CATTCGTTGT TTCTGTCTGA TCCAATAGAT ATGATAGATA TAAGCAATGT 7497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTAATAG CATTCGTTGT TTCTGTCTGA TCCAATAGAT ATGATAGATA TAAGCAATGT 240 GTCTCTTGTG GTCTTATTTG TTGTTGTTGG GATGGTTTGG ATTTTCATTT GGGTCTTGAG 7557 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCATGTG GTCTTATTTG TTGTTGTTGG GATGGTTTGG ATTTTCATTT GGGTCTTGAG 300 TCGAGTGCAG CTTCATGTTT TATTGTGGTC TTTGGTGTTT CCTTGTACTT ATTTATTGTG 7617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGTGCAG CTTCATGTTT TATTGTGGTC TTTGGTGTTT CCTTGTACTT ATTTATTGTG 360 TGTTTGCAAA TTTTGGTTCA TGGGGGTACA CCACCCAGTA TAAGGGATTA CGTTTGTTAA 7677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGCAAA TTTTGGTTCA TGGGGGTACA CCACCCAGTA TAAGGGATTA CGTTTGTTAA 420 AA 7679 || AA 422 hqPGS_C08HBa0167P18.1+_SGN-E224363- (7258 7679) ******************************************************************************** EST sequence 3 +strand 403 n (File: SGN-E350774+) 1 TGAAAAGCTT AGTGTTGAAA GCAAAGATAA AAATGACAAA CCTGAAGACA AAGAGGCCCC 61 TGCAGCTACA GAGGAAAAGG AAGATAAGAA GGAAGAGAAA GCTGAAGAAA AGAATTAAAA 121 TGTTTGTATT GTCGGTCAGT TTTTTTTTTT TTGAAAGGTT AATAGCATTC GTTGTTTCTG 181 TCTGATCCAA TAGATATGAT AGATATAAGC AATGTGTCTC TTGTGGTCTT ATTTGTTGTT 241 GTTGGGATGG TTTGGATTTT CATTTGGGTC TTGAGTCGAG TGCAGCTTCA TGTTTTATTG 301 TGGGCTTTGG TGTTTCCTTG GACTTATTTA TTGTGTGGTT GCAAATTTTG GTTCATGGGG 361 GTACACCACC CAGTATAAGG GATTACGTTT GTTAAAAAAA AAA Predicted gene structure (within gDNA segment 6684 to 8349): Exon 1 7284 7679 ( 396 n); cDNA 1 397 ( 397 n); score: 0.986 MATCH C08HBa0167P18.1+ SGN-E350774+ 0.986 396 0.983 C PGS_C08HBa0167P18.1+_SGN-E350774+ (7284 7679) Alignment (genomic DNA sequence = upper lines): TGAAAAGCTT AGTGTTGAAA GCAAAGATAA AAATGACAAA CCTGAAGACA AAGAGGCCCC 7343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAGCTT AGTGTTGAAA GCAAAGATAA AAATGACAAA CCTGAAGACA AAGAGGCCCC 60 TGCAGCTACA GAGGAAAAGG AAGATAAGAA GGAAGAGAAA GCTGAAGAAA AGAATTAAAA 7403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTACA GAGGAAAAGG AAGATAAGAA GGAAGAGAAA GCTGAAGAAA AGAATTAAAA 120 TGTTTGTATT GTCGGTCAG- TTTTTTTTTT TTGAAAGGTT AATAGCATTC GTTGTTTCTG 7462 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGTATT GTCGGTCAGT TTTTTTTTTT TTGAAAGGTT AATAGCATTC GTTGTTTCTG 180 TCTGATCCAA TAGATATGAT AGATATAAGC AATGTGTCTC TTGTGGTCTT ATTTGTTGTT 7522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGATCCAA TAGATATGAT AGATATAAGC AATGTGTCTC TTGTGGTCTT ATTTGTTGTT 240 GTTGGGATGG TTTGGATTTT CATTTGGGTC TTGAGTCGAG TGCAGCTTCA TGTTTTATTG 7582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGATGG TTTGGATTTT CATTTGGGTC TTGAGTCGAG TGCAGCTTCA TGTTTTATTG 300 TGGTCTTTGG TGTTTCCTTG TACTTATTTA TTGTGTGTTT GCAAATTTTG GTTCATGGGG 7642 ||| |||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| TGGGCTTTGG TGTTTCCTTG GACTTATTTA TTGTGTGGTT GCAAATTTTG GTTCATGGGG 360 GTACACCACC CAGTATAAGG GATTACGTTT GTTAAAA 7679 |||||||||| |||||||||| |||||||||| ||||||| GTACACCACC CAGTATAAGG GATTACGTTT GTTAAAA 397 hqPGS_C08HBa0167P18.1+_SGN-E350774+ (7284 7679) ******************************************************************************** EST sequence 16 +strand 395 n (File: SGN-E298654+) 1 GGGCTGCAGG TTAAAATGAC AAACCTGAAG ACAAAGAGGC CCCTGCAGCT ACAGAGGAAA 61 AGGAAGATAA GAAGGAAGAG AAAGCTGAAG AAAAGAATTA AAATGTTTGT ATTGTCGGTC 121 AGTTTTTTTT TTTTGAAAGG TTAATAGCAT TCGTTGTTTC TGTCTGATCC AATAGATATG 181 ATAGATATAA GCAATGTGTC TCTTGTGGTC TTATTTGTTG TTGTTGGGAT GGTTTGGATT 241 TTCATTTGGG TCTTGAGTCG AGTGCAGCTT CATGTTTTAT TGTGGACTTT GGTGTTTCCT 301 TGTACTTATT TATTGCGTGT TCGCAAATTT TGGTTCATGG GGGTACACCA CCCAGTATAA 361 GGGATTACGT TTGTTAAAAC CTTTAAAAGA AAAAA Predicted gene structure (within gDNA segment 6593 to 8395): Exon 1 7308 7685 ( 378 n); cDNA 8 385 ( 378 n); score: 0.987 MATCH C08HBa0167P18.1+ SGN-E298654+ 0.987 378 0.957 C PGS_C08HBa0167P18.1+_SGN-E298654+ (7308 7685) Alignment (genomic DNA sequence = upper lines): AGATAAAAAT GACAAACCTG AAGACAAAGA GGCCCCTGCA GCTACAGAGG AAAAGGAAGA 7367 || | ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTAAAAT GACAAACCTG AAGACAAAGA GGCCCCTGCA GCTACAGAGG AAAAGGAAGA 67 TAAGAAGGAA GAGAAAGCTG AAGAAAAGAA TTAAAATGTT TGTATTGTCG GTCAGTTTTT 7427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAAGGAA GAGAAAGCTG AAGAAAAGAA TTAAAATGTT TGTATTGTCG GTCAGTTTTT 127 TTTTTTTGAA AGGTTAATAG CATTCGTTGT TTCTGTCTGA TCCAATAGAT ATGATAGATA 7487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTGAA AGGTTAATAG CATTCGTTGT TTCTGTCTGA TCCAATAGAT ATGATAGATA 187 TAAGCAATGT GTCTCTTGTG GTCTTATTTG TTGTTGTTGG GATGGTTTGG ATTTTCATTT 7547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCAATGT GTCTCTTGTG GTCTTATTTG TTGTTGTTGG GATGGTTTGG ATTTTCATTT 247 GGGTCTTGAG TCGAGTGCAG CTTCATGTTT TATTGTGGTC TTTGGTGTTT CCTTGTACTT 7607 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GGGTCTTGAG TCGAGTGCAG CTTCATGTTT TATTGTGGAC TTTGGTGTTT CCTTGTACTT 307 ATTTATTGTG TGTTTGCAAA TTTTGGTTCA TGGGGGTACA CCACCCAGTA TAAGGGATTA 7667 |||||||| | |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATTGCG TGTTCGCAAA TTTTGGTTCA TGGGGGTACA CCACCCAGTA TAAGGGATTA 367 CGTTTGTTAA AACCTTTA 7685 |||||||||| |||||||| CGTTTGTTAA AACCTTTA 385 hqPGS_C08HBa0167P18.1+_SGN-E298654+ (7308 7685) ******************************************************************************** EST sequence 40 -strand 371 n (File: SGN-E224863-) 1 GACAAAGAGG CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA 61 GAAAAGAATT AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA 121 TTCGTTGTTT CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT 181 CTTATTTGTT GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT 241 TCATGTTTTA TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT 301 TTGGTTCATG GGGGTACCCC ACCCAGTATA AGGGATTACG TTTGTTAAAA AAAAAAAAAA 361 AAAAAAAAAA A Predicted gene structure (within gDNA segment 6720 to 8489): Exon 1 7330 7679 ( 350 n); cDNA 1 350 ( 350 n); score: 0.997 PPA cDNA 351 371 MATCH C08HBa0167P18.1+ SGN-E224863- 0.997 350 0.943 C PGS_C08HBa0167P18.1+_SGN-E224863- (7330 7679) Alignment (genomic DNA sequence = upper lines): GACAAAGAGG CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA 7389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGAGG CCCCTGCAGC TACAGAGGAA AAGGAAGATA AGAAGGAAGA GAAAGCTGAA 60 GAAAAGAATT AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA 7449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAATT AAAATGTTTG TATTGTCGGT CAGTTTTTTT TTTTTGAAAG GTTAATAGCA 120 TTCGTTGTTT CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT 7509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTTGTTT CTGTCTGATC CAATAGATAT GATAGATATA AGCAATGTGT CTCTTGTGGT 180 CTTATTTGTT GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT 7569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATTTGTT GTTGTTGGGA TGGTTTGGAT TTTCATTTGG GTCTTGAGTC GAGTGCAGCT 240 TCATGTTTTA TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT 7629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTTTTA TTGTGGTCTT TGGTGTTTCC TTGTACTTAT TTATTGTGTG TTTGCAAATT 300 TTGGTTCATG GGGGTACACC ACCCAGTATA AGGGATTACG TTTGTTAAAA 7679 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TTGGTTCATG GGGGTACCCC ACCCAGTATA AGGGATTACG TTTGTTAAAA 350 hqPGS_C08HBa0167P18.1+_SGN-E224863- (7330 7679) ******************************************************************************** EST sequence 41 -strand 314 n (File: SGN-E307563-) 1 TTTTTTTTTT GAAAGGTTAA TAGCATTCGT TGTTTCTGTC TGATCCAATA GATATGATAG 61 ATATAAGCAA TGTGTCTCTT GTGGTCTTAT TTGTTGTTGT TGGGATGGTT TGGATTTTCA 121 TTTGGGTCTT GAGTCGAGTG CAGCTTCATG TTTTATTGTG GTCTTTGGTG TTTCCTTGTA 181 CTTATTTATT GTGTGTTTGC AAATTTTGGT TCATGGGGGT ACACCACCCA GTATAAGGGA 241 TTACGTTTGT TAAAAAAAAA AAAAAAAAAA AAAAACTCAG ACTAGTCTCT CCCGCGTGCC 301 GAATTCGGCA CGAG Predicted gene structure (within gDNA segment 6815 to 8869): Exon 1 7425 7679 ( 255 n); cDNA 1 255 ( 255 n); score: 1.000 PPA cDNA 264 276 MATCH C08HBa0167P18.1+ SGN-E307563- 1.000 255 0.812 C PGS_C08HBa0167P18.1+_SGN-E307563- (7425 7679) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT GAAAGGTTAA TAGCATTCGT TGTTTCTGTC TGATCCAATA GATATGATAG 7484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT GAAAGGTTAA TAGCATTCGT TGTTTCTGTC TGATCCAATA GATATGATAG 60 ATATAAGCAA TGTGTCTCTT GTGGTCTTAT TTGTTGTTGT TGGGATGGTT TGGATTTTCA 7544 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAAGCAA TGTGTCTCTT GTGGTCTTAT TTGTTGTTGT TGGGATGGTT TGGATTTTCA 120 TTTGGGTCTT GAGTCGAGTG CAGCTTCATG TTTTATTGTG GTCTTTGGTG TTTCCTTGTA 7604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGTCTT GAGTCGAGTG CAGCTTCATG TTTTATTGTG GTCTTTGGTG TTTCCTTGTA 180 CTTATTTATT GTGTGTTTGC AAATTTTGGT TCATGGGGGT ACACCACCCA GTATAAGGGA 7664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATTTATT GTGTGTTTGC AAATTTTGGT TCATGGGGGT ACACCACCCA GTATAAGGGA 240 TTACGTTTGT TAAAA 7679 |||||||||| ||||| TTACGTTTGT TAAAA 255 hqPGS_C08HBa0167P18.1+_SGN-E307563- (7425 7679) ******************************************************************************** EST sequence 5 -strand 738 n (File: SGN-E538024-) 1 CCAGAATTTC ATGAAGTATG ATGAGATGGA TACTCCAACA TCAGCAAGAT CTGGTTCAGG 61 ACCTTCTCGG AAGATGTCAT TAACTCCCAA AGATTTAAGT TTTGTGGGCT ATACATACAA 121 AAACTTTGAT GCTGTCAAGG CACTGCGCAA CTCTTCCGAT CCTACAAGGG ACACATCACC 181 TAGGCGGCCG TCAATTGATT CCATATTCAA TAATTCTAAG GACTATCCTT CAACAAAGGG 241 AACAAGTGGA GAAATAGACA CAGATATGAT AACGTCACCC GGTTGTGCAA TATCTCCATG 301 ATATCGCCAG AGCTTTATAT TGAAAAAGAA ACTAGCAAAG GTGGTGGTAG CATACACCTG 361 TTGTATTTGA TCAGGTTGTT CACCCCTTCA TCAGCATTCC AAGTGTGTTT GGCCCCATGA 421 TATAAGTGTA CAGTTAATGC TTGAGAAACT TGGTTGATTC GTAGGACATG GAAACTGTTG 481 TAGGAAATGT AATGTTTGTG CAATAGAAAC TTAGACTGCT TAATATCGTC CATTGCCCAG 541 GTTGGCAATC AAATGCTAAC TCTTGTGGCA ATTGCTGGTC AGATGAAATT TATTACTTCT 601 GGGACCAATT ATGCTGTGGT TCCTTTTTTA AATATATGGG CAAAACTTTG TTCATAAATA 661 TTGCAACCCC CATTGTATCT TATCTTTTGG TTATGATAGA GGCTTTTCGG TAAAAAAAAA 721 AAAAAAAAAA AAAGGAAA Predicted gene structure (within gDNA segment 13927 to 7584): Exon 1 13085 13038 ( 48 n); cDNA 26 73 ( 48 n); score: 1.000 Intron 1 13037 9969 (3069 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 9968 9884 ( 85 n); cDNA 74 158 ( 85 n); score: 1.000 Intron 2 9883 9108 ( 776 n); Pd: 1.000 (s: 1.00), Pa: 0.872 (s: 1.00) Exon 3 9107 9057 ( 51 n); cDNA 159 209 ( 51 n); score: 1.000 Intron 3 9056 8983 ( 74 n); Pd: 0.978 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 8982 8479 ( 504 n); cDNA 210 713 ( 504 n); score: 0.994 PPA cDNA 714 734 MATCH C08HBa0167P18.1- SGN-E538024- 0.995 688 0.932 C PGS_C08HBa0167P18.1-_SGN-E538024- (13085 13038,9968 9884,9107 9057,8982 8479) Alignment (genomic DNA sequence = upper lines): ATGGATACTC CAACATCAGC AAGATCTGGT TCAGGACCTT CTCGGAAGGT TTGTAACCAC 13026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATGGATACTC CAACATCAGC AAGATCTGGT TCAGGACCTT CTCGGAAG.. .......... 73 TGGTTCTTTT CTGTCTGTGT TTCAATACCT TTTGTATATG ATAGTATTTT ATGGCCAATG 12966 .......... .......... .......... .......... .......... .......... 73 AACTGATAAA GTATCTGCAT CCTTATTACT GCCACTTGCC TAAAATTCTG TAGTACTAAG 12906 .......... .......... .......... .......... .......... .......... 73 CAAAAGCCGG AAGCTAGAAG GGTTAACACA GAACTTACTG TCGAAACGTG TTTTGGCTCC 12846 .......... .......... .......... .......... .......... .......... 73 AATCAAACAT AAAAACTACT TAAATCTGTT TCCATCCACT CTTATCCAAA AATATAAATG 12786 .......... .......... .......... .......... .......... .......... 73 CAAGCTATGT TGGATATTGC AAATCAGTAG CTCTCTAAAT ATTTCTAGTT TCTTTTTTTT 12726 .......... .......... .......... .......... .......... .......... 73 TAATGCTAGT TATGTTGGAT TGCAAATCAG TAGCTCTCTA TATATTTCTA GTTCCTTTTT 12666 .......... .......... .......... .......... .......... .......... 73 TTTTCTTTTG AGAAGGTAAC ATATTTGTAT ATAGATATAA AGTTGGACCT CCCACTTCAC 12606 .......... .......... .......... .......... .......... .......... 73 AATTGTGTGA GTCCCCCATG ATTACAAAAT GCCATGCAAA ATATCTCTGC CATCCTATAT 12546 .......... .......... .......... .......... .......... .......... 73 CTTCTTTATA AGGAATTAGA ACATCGAAAT TTGGACCGTG ATCTTCTCAG CTTATCCCTT 12486 .......... .......... .......... .......... .......... .......... 73 TACACCAAAA GTAAAAAAAG ATTACACTTC ATTTTCTACT TCTGGGAGTT GCTAGTCTTC 12426 .......... .......... .......... .......... .......... .......... 73 TCTGCAAAAC ATCTTTGTTT TCTTTCCCAG ATTGTCCACC AAATGCTAGC TGGGACAATC 12366 .......... .......... .......... .......... .......... .......... 73 CTCCATGTCT TTTTGTTGCC AGTTGGGTGG CCTTCACTGT TCCAGCAATT GAGAAATTAC 12306 .......... .......... .......... .......... .......... .......... 73 GAGATACTTC TTGGCGTTAC CTATTGTATA CCCCTCAAGT TTAAAAACAT CCTCCATAGC 12246 .......... .......... .......... .......... .......... .......... 73 TGTGAAGTTC CCTTACAATG TAAAAAAAGA TGAATATCTG GCTTTGCCTC TTCTCCACAT 12186 .......... .......... .......... .......... .......... .......... 73 ATGTAACAAG GGTATTATCC TCTCCTGGCA AGATTTTCCT GTGTAAGAAC TGCTCCTCTG 12126 .......... .......... .......... .......... .......... .......... 73 GCCAGTAACC AAGTAAATAA TGCAACTTCA TATGGAATTT TAACCTTCCA TATCATTTTC 12066 .......... .......... .......... .......... .......... .......... 73 CATGACCAAA CTTTCCAAAA CAATAATTAG ATGTGTTGAA TTTCCTTGAG CTGAACTAAC 12006 .......... .......... .......... .......... .......... .......... 73 AGAGAAGTTC CCTGTTTTAT GTCCTTGCCA TATCAACTGA TCCTAGTAAT CTGCAGTTCC 11946 .......... .......... .......... .......... .......... .......... 73 TGAACTGCTC CAGCATTTTA TATAATTCAA CCACTCTGTC CATCTCCCAA TCAAAAGGAA 11886 .......... .......... .......... .......... .......... .......... 73 TCTTCTGAAG GTAAGGTTCC AGCCTTGAGG ACTCCAATCC TCTCCACCTT TAGCTTCTTG 11826 .......... .......... .......... .......... .......... .......... 73 TTGTTGATTG ATCCTGTGAA TATCAGGAAG TGATTTACCA AAGCATCACT TGGCAACCAA 11766 .......... .......... .......... .......... .......... .......... 73 TTGCCGTTCC AAAAATAAAT CTTTATACCA TTACCAATTC TAAGAGTGGT TTTGGTGCTG 11706 .......... .......... .......... .......... .......... .......... 73 AATCCTGGCC AAGGATTCCT TATGGGCCTC CATAGATCGA CTCCATAAGG AAGGCTCATT 11646 .......... .......... .......... .......... .......... .......... 73 TACCTTGTTG GTGGTCTACT GTTCTGTACT GTATCTCTCC TAATCACCTC CTTCCACAAT 11586 .......... .......... .......... .......... .......... .......... 73 AAATACTTAT TTGAAGAAAC TTCCATGGCC ATCTCATCAT CAAGCTTCAG TTCTGTACCT 11526 .......... .......... .......... .......... .......... .......... 73 TTTAAGCTTT TTTCCCCAAA CCCCCATCCT TATGCTGATT ACCAGTGAAT CCCATTTGAC 11466 .......... .......... .......... .......... .......... .......... 73 AAGGTCAATT TTTTTCTTTT CACTGTTTCA ATCCCATAGA AAATTTCTTC TTAAAGAATC 11406 .......... .......... .......... .......... .......... .......... 73 AGTTCTCTCG GCAACAGCCA ACATTCACTA GAATAGGGAA TAGAGACATC ATGTATGTTG 11346 .......... .......... .......... .......... .......... .......... 73 GCATAGCATC CAGAACTGAG TTTATTAGAG TAAGCGGCAC CCAAATGAAA GGTACTGGCA 11286 .......... .......... .......... .......... .......... .......... 73 TTTCCTATGA GCCAGTTTCT TCTCACATTT TTCTATTACT CCATTCCATA TCCTATTTGA 11226 .......... .......... .......... .......... .......... .......... 73 TTTGCTTCCC AGAGGAATCC CCAAGCATAC AGTTGGCAGT TCCCCAACTT TTCTGTACAA 11166 .......... .......... .......... .......... .......... .......... 73 ATATTAGCCA AACTTAGGAT ATCATTACAT CATTAACTCG ATATACAATA TCTCTTGTTC 11106 .......... .......... .......... .......... .......... .......... 73 CAGCTAATAT GTAAGCCTGA GATATCTTCA AACAGAATGA AAAAATCACC CTCATCATCA 11046 .......... .......... .......... .......... .......... .......... 73 TCGACTGTTC TCTGTCAACT TCACAAAATA CAAGAAAATC ATCAGCATAC TGAAGGTGAG 10986 .......... .......... .......... .......... .......... .......... 73 AAATTGCCAT ACTTCAGTCA GCTCTTGTGC TAACTTTGAA CCCCTGAACC AATTATTTTC 10926 .......... .......... .......... .......... .......... .......... 73 CTGTGCACTT TTCACCAAAC CATTCAGTCC TTCCATGGCT ATGATGAAAA CTGAAAAGAA 10866 .......... .......... .......... .......... .......... .......... 73 AAAAGAGAGA GAGGATCTCC TTACCTTAAG CCTCTCTGGG AAGGAAAAAA ACCAGACAGG 10806 .......... .......... .......... .......... .......... .......... 73 GTACCATTTA TTAGTACTGA AAATTTGACA CTGCTTATGC AAAACTTAAA TTTACCTAAT 10746 .......... .......... .......... .......... .......... .......... 73 CCATCTTTCG CCAAATCCTA TTTCCTCATC ACATCCAGCG AGTATTTCTT ATGTGTGTAT 10686 .......... .......... .......... .......... .......... .......... 73 ATATATATTT CAGAGGCTTG TAGATTTTTG ATATATTTTC TATATCTTTT CTTTTCTAGT 10626 .......... .......... .......... .......... .......... .......... 73 AACAGATATA TAGCCCTAGA TCCAATTGAC ACCACATTAT TGCATACATA CTTTTGAATA 10566 .......... .......... .......... .......... .......... .......... 73 AAACCTAACT GAATGGTCAT GTGTATAACA AGCTTTATGA ATCGCTAGTA AAGTAGATGG 10506 .......... .......... .......... .......... .......... .......... 73 TTTACTTTAA TCAAGTACTT TATCGTCGAT ATCTTTAACT ACCAAAACAG AAAAAAAAGG 10446 .......... .......... .......... .......... .......... .......... 73 AAAGCTGTTC TTTTACTTCG ATCTTCTTGT TTTGTTTCTT GTACATCAAC CTCCTAGAAG 10386 .......... .......... .......... .......... .......... .......... 73 TCATGACATT TTGCACTTAG AAATCATGTC CATTCCTTTG GATATGTGTC CTTACATGCA 10326 .......... .......... .......... .......... .......... .......... 73 TAAATAATGA AACAAAGCTT AGCTGCAATT TTTTTTTATT GAGAAAGAAA GCTTAGCTGC 10266 .......... .......... .......... .......... .......... .......... 73 AATTTACAAG TGGTTATAAA GTGTTTGGGC ATAAGTTATA GAAAGATGGA TTTGAACCCA 10206 .......... .......... .......... .......... .......... .......... 73 ACTGTGCAAG ATTCTGGAAG GATTATAAAG TTCTTCCAGT GTTTGTTCTG CAGCCTGCAT 10146 .......... .......... .......... .......... .......... .......... 73 GATTTGTGGT ACATCTAGAA ATTTCTCGCA ATAGTTTCAT CCTGGTATTC TTCTACGTAC 10086 .......... .......... .......... .......... .......... .......... 73 CCTATGTGAA GCCAAACTTC AAGTGAAATA TTTGATGCAT AATAATAACC TGCTAATATG 10026 .......... .......... .......... .......... .......... .......... 73 TGTTTGCAGC CTCAGAATTC TAAGTTAGTT ATCTAACTTC AAGTTTCATG TTTATAGATG 9966 ||| .......... .......... .......... .......... .......... .......ATG 76 TCATTAACTC CCAAAGATTT AAGTTTTGTG GGCTATACAT ACAAAAACTT TGATGCTGTC 9906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTAACTC CCAAAGATTT AAGTTTTGTG GGCTATACAT ACAAAAACTT TGATGCTGTC 136 AAGGCACTGC GCAACTCTTC CGGTGAGTCA TTTGTTCCCC TTTCAATGCC TTCTACAATT 9846 |||||||||| |||||||||| || AAGGCACTGC GCAACTCTTC CG........ .......... .......... .......... 158 GTGTAATTAT ACTTTAGTTA GATGTTTGCG TGTGCTTATC TTTCATAAAA GTGGACCTCT 9786 .......... .......... .......... .......... .......... .......... 158 GACACCTATC TAGAAATCTC CTCGGAACTA CTGTAACTGC ACTCTCCAAA GAAGCATTGT 9726 .......... .......... .......... .......... .......... .......... 158 AGGTTTTCCT CTAACTTTGG GGGGAGTTTC TGCAAGTTCT TATCTGAAAA TGAAACCAGT 9666 .......... .......... .......... .......... .......... .......... 158 TCAGAGTTCA CAAGATTGAT ATTTCTAATA CTTATTATTG TTATTGTTAC TATTCATGAT 9606 .......... .......... .......... .......... .......... .......... 158 GATGGTGTTG TAAATCTTTT TGTTTGTTTA TCTGGCTTCT AGGCTGAATT TGAAGGTTTT 9546 .......... .......... .......... .......... .......... .......... 158 GGTACAACTA CTTTGCTTCC TTTCCCAAGC TCTCTGATAT TTTAAGGATG CATTTCTCGA 9486 .......... .......... .......... .......... .......... .......... 158 TTGCACATGG TTTATAATTA TTGGTCTGGA ATTATAAAAT AATAATAAAC TAGTGATGCT 9426 .......... .......... .......... .......... .......... .......... 158 AACCTGCAAG AAGTTTTGTG GAAATTATAT TATCAAGAAC CAAAATGAAT GTTTAAACTA 9366 .......... .......... .......... .......... .......... .......... 158 TTTCAGAAGG CATACCAGGC ATTAGACTAT GTACCTTCTT GTTTAACATC CAATGGCACT 9306 .......... .......... .......... .......... .......... .......... 158 TCATCCGAAA TCGGAAACAA ATAGATCTTC AAAAGACCGC ATGGACCTTC TGCTATTTTG 9246 .......... .......... .......... .......... .......... .......... 158 AACCTAATCT CTGTTACTGA ACTAATGAGT AGTATCTGTC ATGTTTCTAT TTGCTTTATG 9186 .......... .......... .......... .......... .......... .......... 158 TGATGTTAAA TGTTCATCTT ATCTGTCTAC ATATAAGTGC GCACAGAGTG ATTTCATTCT 9126 .......... .......... .......... .......... .......... .......... 158 CATTTCAATT TTTTCCAGAT CCTACAAGGG ACACATCACC TAGGCGGCCG TCAATTGATT 9066 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT CCTACAAGGG ACACATCACC TAGGCGGCCG TCAATTGATT 200 CCATATTCAG TAAGTGTTGT GACCTTGTAA ATGGTTTAAA TATCGAACTT CTTATCCTAC 9006 ||||||||| CCATATTCA. .......... .......... .......... .......... .......... 209 TAGTCTAATT AATATGACTG CAGATAATTC TAAGGACTAT CCTTCAACAA AGGGAACAAG 8946 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATAATTC TAAGGACTAT CCTTCAACAA AGGGAACAAG 246 TGGAGAAATA GACACAGATA TGATAACGTC AACCGGTTGT GCAATATCTC CATGATATCG 8886 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGGAGAAATA GACACAGATA TGATAACGTC ACCCGGTTGT GCAATATCTC CATGATATCG 306 CCAGAGCTTT ATATTGAAAA AGAAACTAGC AAAGGTGGTG GTAGCATACA CCTGTTGTAT 8826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAGCTTT ATATTGAAAA AGAAACTAGC AAAGGTGGTG GTAGCATACA CCTGTTGTAT 366 TTGATCAGGT TGTTCACCCC TTCATCAGCA TTCCAAGTGT GTTTGGCACC ATGATATAAG 8766 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TTGATCAGGT TGTTCACCCC TTCATCAGCA TTCCAAGTGT GTTTGGCCCC ATGATATAAG 426 TGTACAGTTA ATGCTTGAGA AACTTGGTTG ATTCGTAGGA CATGGAAACT GTTGTAGGAA 8706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACAGTTA ATGCTTGAGA AACTTGGTTG ATTCGTAGGA CATGGAAACT GTTGTAGGAA 486 ATGTAATGTT TGTGCAATAG AAACTTAGAC TGCTTAATAT CGTCCATTGC CCAGGTTGGC 8646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAATGTT TGTGCAATAG AAACTTAGAC TGCTTAATAT CGTCCATTGC CCAGGTTGGC 546 AATCAAATGC TAACTCTTGT GGCAATTGCT GGTCAGATGA AATTTATTAC TTCTGGGACC 8586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAAATGC TAACTCTTGT GGCAATTGCT GGTCAGATGA AATTTATTAC TTCTGGGACC 606 AATTATGCTG TGGTTCCTTT TTTAAATATA TGGGCAAAAC TTTGTTCATA AATATTGCAA 8526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATGCTG TGGTTCCTTT TTTAAATATA TGGGCAAAAC TTTGTTCATA AATATTGCAA 666 CCCCCATTGT ATCTTATCTT TTGGTTATGA TAGAGGCTTT TCAGTAA 8479 |||||||||| |||||||||| |||||||||| |||||||||| || |||| CCCCCATTGT ATCTTATCTT TTGGTTATGA TAGAGGCTTT TCGGTAA 713 hqPGS_C08HBa0167P18.1-_SGN-E538024- (13085 13038,9968 9884,9107 9057,8982 8479) ******************************************************************************** EST sequence 35 +strand 641 n (File: SGN-E297605+) 1 CCAGAAGTTA ATGGAGAGCT GGACACCCAG AATTTCATGA AGTATGATGA GATGGATACT 61 CCAACATCAG CAAGATCTGG TTCAGGACCT TCTCGGAAGA TGTCATTAAC TCCCAAAGAT 121 TTAAGTTTTG TGGGCTATAC ATACAAAAAC TTTGATGCTG TCAAGGCACT GCGCAACTCT 181 TCCGATCCTA CAAGGGACAC ATCACCTAGG CGGCCGTCAA TTGATTCCAT ATTCAATAAT 241 TCTAAGGACT ATCCTTCAAC AAAGGGAACA AGTGGAGAAA TAGACACAGA TATGATAACG 301 TCAACCGGTT GTGCAATATC TCCATGATAT CGCCAGAGCT TTATATTGAA AAAGAAACTA 361 GCAAAGGTGG TGGTAGCATA CACCTGTTGT ATTTGATCAG GTTGTTCACC CCTTCATCAG 421 CATTCCAAGT GTGTTTGGCA CCATGATATA AGTGTACAGT TAATGCTTGA GAAACTTGGT 481 TGATTCGTAG GACATGGAAA CTGTTGTAGG AAATGTAATG TTTGTGCAAT AGAAACTTAG 541 ACTGCTTAAT ATCGTCCATT GCCCAGGTTG GCAATCAAAT GCTAACTCTT GTGGCAATTG 601 CTGGTCAGAT GAAATTTATT ACTTTTGGGA CCAATTATGC T Predicted gene structure (within gDNA segment 15802 to 7967): Exon 1 15202 15152 ( 51 n); cDNA 1 51 ( 51 n); score: 1.000 Intron 1 15151 13086 (2066 n); Pd: 0.992 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 13085 13038 ( 48 n); cDNA 52 99 ( 48 n); score: 1.000 Intron 2 13037 9969 (3069 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 9968 9884 ( 85 n); cDNA 100 184 ( 85 n); score: 1.000 Intron 3 9883 9108 ( 776 n); Pd: 1.000 (s: 1.00), Pa: 0.872 (s: 1.00) Exon 4 9107 9057 ( 51 n); cDNA 185 235 ( 51 n); score: 1.000 Intron 4 9056 8983 ( 74 n); Pd: 0.978 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 5 8982 8577 ( 406 n); cDNA 236 641 ( 406 n); score: 0.998 MATCH C08HBa0167P18.1- SGN-E297605+ 0.998 641 1.000 C PGS_C08HBa0167P18.1-_SGN-E297605+ (15202 15152,13085 13038,9968 9884,9107 9057,8982 8577) Alignment (genomic DNA sequence = upper lines): CCAGAAGTTA ATGGAGAGCT GGACACCCAG AATTTCATGA AGTATGATGA GGTATTTCAT 15143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCAGAAGTTA ATGGAGAGCT GGACACCCAG AATTTCATGA AGTATGATGA G......... 51 GAAATTGAAT GAGTCTTGTA TTTTATTGGA GAAAGTTAAT GACTTTTATA GCCAGTGACA 15083 .......... .......... .......... .......... .......... .......... 51 TACACCCTTT TGATACTTTT AAATATCTAA TGCACAGTCA ATGTCCATCT GTAACACCTA 15023 .......... .......... .......... .......... .......... .......... 51 GAATTTTCCT TATTTTATTT ATACATTACT GTCCCACCAT CTCTATTTAC TTACAAAATG 14963 .......... .......... .......... .......... .......... .......... 51 GACTGCAACA TGTGTCTTCT TTTCACTATC TGTTTACAAT ATTGGTGAAC TGTGAGGAAT 14903 .......... .......... .......... .......... .......... .......... 51 GCCTCATCCG AAAGGTTTAG TAGAGGGTAG ATTTCTATTA TTTGTTTTTA GATCCACAGC 14843 .......... .......... .......... .......... .......... .......... 51 ACACCTTCTT GCATGTGGGA CCATGTGAAG CGCGTGGACC TACTCATCTA AGAGTTTTAT 14783 .......... .......... .......... .......... .......... .......... 51 ACTGTTTGTA TGTTTCCCTT TAGAAGATAT AAGTCAGATA GTAGGCATTC ACACAACCTT 14723 .......... .......... .......... .......... .......... .......... 51 CCAAAATAGC AGCCTCTTAA AGCACTATTC TTTCTCAAAC AAATAACAAA AATCCCATGA 14663 .......... .......... .......... .......... .......... .......... 51 TGGTTATTCT CGCATTCAAC AGCATGTGTT CCTCAATTGT GCATTTGTTT TGGGTTGAAT 14603 .......... .......... .......... .......... .......... .......... 51 ATATATATTG GTCTTGGAAG TTGTCGATGA GTTGCTTAAG TTCAAACTCG ATTGCTATGA 14543 .......... .......... .......... .......... .......... .......... 51 GCATGGAGTA AAGTTAGGTT TGAGATCGGA GAGGGGGTAA TTGTGTGTGT GTTTTAGCTG 14483 .......... .......... .......... .......... .......... .......... 51 ACTATTTTTT AGGTTTAGAA AAGAAAAAAA TGTATGTGTA TATGTATGTG TGTGTGCGCG 14423 .......... .......... .......... .......... .......... .......... 51 CACATATTCT GCAGAAATGA AGGAGTTAGG AAAACAATAA GAGAGATTGA TGCTGAAGAA 14363 .......... .......... .......... .......... .......... .......... 51 TTAGTCTTGA TTCTAGATAA AGGTTCTCCA GAATTCTCCA ATAAATGTGT CAGAAAGAAA 14303 .......... .......... .......... .......... .......... .......... 51 GGTCCTTTGC TACCAAGAAT AATTTCTTAG AGTCAATCGC TCCTACTTTC TTGTAATTTT 14243 .......... .......... .......... .......... .......... .......... 51 TTCATTTAAC AAAAAAAGGC ACATTTACGT TCTACATATT ATTCTTTACT CAAAAACTAG 14183 .......... .......... .......... .......... .......... .......... 51 TTGGTACTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTAT ATATATATAT ATATATATAT 14123 .......... .......... .......... .......... .......... .......... 51 ATATATATAT ATATATATAC ACGCCTCTTT TTTCTTTTAA CTTTCTTTTG GCCATTTTTT 14063 .......... .......... .......... .......... .......... .......... 51 CAATCAAAAT TCATCTGATT CCTCAGTTCT GTAGTTTGAA CGTCACAACT CATCAACTAC 14003 .......... .......... .......... .......... .......... .......... 51 CTTGAGTACT GTCCACTCAC CCCCAGTGTA AATGAAGAGC ACAGTTCAGG AGGCACACTG 13943 .......... .......... .......... .......... .......... .......... 51 TATTGAGTGT AACGATAACT GTCCTGAGCC TTTTACTATT TTTAAGTGAA ATAATGCTCT 13883 .......... .......... .......... .......... .......... .......... 51 TCAAAAAACT GACATTGCAA AAGCTTGCAA TCATATCTAT TGTTCGACTT GTATGCTTAG 13823 .......... .......... .......... .......... .......... .......... 51 ATAAGCAACC TATAAAAAGG AAATGAAATG CTGTTTTTCC AGGCTTGCTT CTTTTTTTCT 13763 .......... .......... .......... .......... .......... .......... 51 TGCGCCAAGC ATGTACAAAG TTTTGTTGAT GGGCAACATT CAGACTCAAC CTAGGATGTA 13703 .......... .......... .......... .......... .......... .......... 51 TATTTGCTTT TGTACAGTGT TGAAGTGTGT GAATCACCTC GTTTTTCAAG TTAAATTGTT 13643 .......... .......... .......... .......... .......... .......... 51 AGAGGCTGTA ATCTGTGATA TGTCCCCTAA TGACCATTTT CAAAAGAGTT TTCTCTCTTC 13583 .......... .......... .......... .......... .......... .......... 51 CATTCTCTTT TCACAAATAA GTTAAGACAA GAAACTGGTA GAGTTTCTTG CAATGCAATT 13523 .......... .......... .......... .......... .......... .......... 51 TGTATCCTGC CTGTAATCTC AGTGTCTCAC TTTCTAAAAG CAGTTGCTTT CTATTACTCC 13463 .......... .......... .......... .......... .......... .......... 51 ATGAGTATGG TGCTTTTTTG ACTAGCTAAC TTTAAGTCAA GATCTAAATT TTATCTGTGC 13403 .......... .......... .......... .......... .......... .......... 51 TGCTACGCTT GTATTAGGTA AGTCAAGCTT TCTCCTTAAT CTCTGTTTCT TGTCAGACTT 13343 .......... .......... .......... .......... .......... .......... 51 AGTCACAATA TTGTGCATGG TCTTTAGTTC TGGCATCTTT TATTGACGAT TCATGCCGAG 13283 .......... .......... .......... .......... .......... .......... 51 GATTTTGCTT TGTGATTTCA AACTAGTAGT CCTCACTTTT TCAATTTCCT ATTGGCAAGA 13223 .......... .......... .......... .......... .......... .......... 51 ATATGCTTGA TTCACATGTT AGCCTTCTGA AACTATACTT GGTGGATCTA TAGTTTGTCA 13163 .......... .......... .......... .......... .......... .......... 51 CCTTTATCAT CTAGTTCAAA TGTAGTCTGT TTCTCCTTGT AAGTAACTGT TTTCTTTCCT 13103 .......... .......... .......... .......... .......... .......... 51 TCTGGACTTC TTCATAGATG GATACTCCAA CATCAGCAAG ATCTGGTTCA GGACCTTCTC 13043 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......ATG GATACTCCAA CATCAGCAAG ATCTGGTTCA GGACCTTCTC 94 GGAAGGTTTG TAACCACTGG TTCTTTTCTG TCTGTGTTTC AATACCTTTT GTATATGATA 12983 ||||| GGAAG..... .......... .......... .......... .......... .......... 99 GTATTTTATG GCCAATGAAC TGATAAAGTA TCTGCATCCT TATTACTGCC ACTTGCCTAA 12923 .......... .......... .......... .......... .......... .......... 99 AATTCTGTAG TACTAAGCAA AAGCCGGAAG CTAGAAGGGT TAACACAGAA CTTACTGTCG 12863 .......... .......... .......... .......... .......... .......... 99 AAACGTGTTT TGGCTCCAAT CAAACATAAA AACTACTTAA ATCTGTTTCC ATCCACTCTT 12803 .......... .......... .......... .......... .......... .......... 99 ATCCAAAAAT ATAAATGCAA GCTATGTTGG ATATTGCAAA TCAGTAGCTC TCTAAATATT 12743 .......... .......... .......... .......... .......... .......... 99 TCTAGTTTCT TTTTTTTTAA TGCTAGTTAT GTTGGATTGC AAATCAGTAG CTCTCTATAT 12683 .......... .......... .......... .......... .......... .......... 99 ATTTCTAGTT CCTTTTTTTT TCTTTTGAGA AGGTAACATA TTTGTATATA GATATAAAGT 12623 .......... .......... .......... .......... .......... .......... 99 TGGACCTCCC ACTTCACAAT TGTGTGAGTC CCCCATGATT ACAAAATGCC ATGCAAAATA 12563 .......... .......... .......... .......... .......... .......... 99 TCTCTGCCAT CCTATATCTT CTTTATAAGG AATTAGAACA TCGAAATTTG GACCGTGATC 12503 .......... .......... .......... .......... .......... .......... 99 TTCTCAGCTT ATCCCTTTAC ACCAAAAGTA AAAAAAGATT ACACTTCATT TTCTACTTCT 12443 .......... .......... .......... .......... .......... .......... 99 GGGAGTTGCT AGTCTTCTCT GCAAAACATC TTTGTTTTCT TTCCCAGATT GTCCACCAAA 12383 .......... .......... .......... .......... .......... .......... 99 TGCTAGCTGG GACAATCCTC CATGTCTTTT TGTTGCCAGT TGGGTGGCCT TCACTGTTCC 12323 .......... .......... .......... .......... .......... .......... 99 AGCAATTGAG AAATTACGAG ATACTTCTTG GCGTTACCTA TTGTATACCC CTCAAGTTTA 12263 .......... .......... .......... .......... .......... .......... 99 AAAACATCCT CCATAGCTGT GAAGTTCCCT TACAATGTAA AAAAAGATGA ATATCTGGCT 12203 .......... .......... .......... .......... .......... .......... 99 TTGCCTCTTC TCCACATATG TAACAAGGGT ATTATCCTCT CCTGGCAAGA TTTTCCTGTG 12143 .......... .......... .......... .......... .......... .......... 99 TAAGAACTGC TCCTCTGGCC AGTAACCAAG TAAATAATGC AACTTCATAT GGAATTTTAA 12083 .......... .......... .......... .......... .......... .......... 99 CCTTCCATAT CATTTTCCAT GACCAAACTT TCCAAAACAA TAATTAGATG TGTTGAATTT 12023 .......... .......... .......... .......... .......... .......... 99 CCTTGAGCTG AACTAACAGA GAAGTTCCCT GTTTTATGTC CTTGCCATAT CAACTGATCC 11963 .......... .......... .......... .......... .......... .......... 99 TAGTAATCTG CAGTTCCTGA ACTGCTCCAG CATTTTATAT AATTCAACCA CTCTGTCCAT 11903 .......... .......... .......... .......... .......... .......... 99 CTCCCAATCA AAAGGAATCT TCTGAAGGTA AGGTTCCAGC CTTGAGGACT CCAATCCTCT 11843 .......... .......... .......... .......... .......... .......... 99 CCACCTTTAG CTTCTTGTTG TTGATTGATC CTGTGAATAT CAGGAAGTGA TTTACCAAAG 11783 .......... .......... .......... .......... .......... .......... 99 CATCACTTGG CAACCAATTG CCGTTCCAAA AATAAATCTT TATACCATTA CCAATTCTAA 11723 .......... .......... .......... .......... .......... .......... 99 GAGTGGTTTT GGTGCTGAAT CCTGGCCAAG GATTCCTTAT GGGCCTCCAT AGATCGACTC 11663 .......... .......... .......... .......... .......... .......... 99 CATAAGGAAG GCTCATTTAC CTTGTTGGTG GTCTACTGTT CTGTACTGTA TCTCTCCTAA 11603 .......... .......... .......... .......... .......... .......... 99 TCACCTCCTT CCACAATAAA TACTTATTTG AAGAAACTTC CATGGCCATC TCATCATCAA 11543 .......... .......... .......... .......... .......... .......... 99 GCTTCAGTTC TGTACCTTTT AAGCTTTTTT CCCCAAACCC CCATCCTTAT GCTGATTACC 11483 .......... .......... .......... .......... .......... .......... 99 AGTGAATCCC ATTTGACAAG GTCAATTTTT TTCTTTTCAC TGTTTCAATC CCATAGAAAA 11423 .......... .......... .......... .......... .......... .......... 99 TTTCTTCTTA AAGAATCAGT TCTCTCGGCA ACAGCCAACA TTCACTAGAA TAGGGAATAG 11363 .......... .......... .......... .......... .......... .......... 99 AGACATCATG TATGTTGGCA TAGCATCCAG AACTGAGTTT ATTAGAGTAA GCGGCACCCA 11303 .......... .......... .......... .......... .......... .......... 99 AATGAAAGGT ACTGGCATTT CCTATGAGCC AGTTTCTTCT CACATTTTTC TATTACTCCA 11243 .......... .......... .......... .......... .......... .......... 99 TTCCATATCC TATTTGATTT GCTTCCCAGA GGAATCCCCA AGCATACAGT TGGCAGTTCC 11183 .......... .......... .......... .......... .......... .......... 99 CCAACTTTTC TGTACAAATA TTAGCCAAAC TTAGGATATC ATTACATCAT TAACTCGATA 11123 .......... .......... .......... .......... .......... .......... 99 TACAATATCT CTTGTTCCAG CTAATATGTA AGCCTGAGAT ATCTTCAAAC AGAATGAAAA 11063 .......... .......... .......... .......... .......... .......... 99 AATCACCCTC ATCATCATCG ACTGTTCTCT GTCAACTTCA CAAAATACAA GAAAATCATC 11003 .......... .......... .......... .......... .......... .......... 99 AGCATACTGA AGGTGAGAAA TTGCCATACT TCAGTCAGCT CTTGTGCTAA CTTTGAACCC 10943 .......... .......... .......... .......... .......... .......... 99 CTGAACCAAT TATTTTCCTG TGCACTTTTC ACCAAACCAT TCAGTCCTTC CATGGCTATG 10883 .......... .......... .......... .......... .......... .......... 99 ATGAAAACTG AAAAGAAAAA AGAGAGAGAG GATCTCCTTA CCTTAAGCCT CTCTGGGAAG 10823 .......... .......... .......... .......... .......... .......... 99 GAAAAAAACC AGACAGGGTA CCATTTATTA GTACTGAAAA TTTGACACTG CTTATGCAAA 10763 .......... .......... .......... .......... .......... .......... 99 ACTTAAATTT ACCTAATCCA TCTTTCGCCA AATCCTATTT CCTCATCACA TCCAGCGAGT 10703 .......... .......... .......... .......... .......... .......... 99 ATTTCTTATG TGTGTATATA TATATTTCAG AGGCTTGTAG ATTTTTGATA TATTTTCTAT 10643 .......... .......... .......... .......... .......... .......... 99 ATCTTTTCTT TTCTAGTAAC AGATATATAG CCCTAGATCC AATTGACACC ACATTATTGC 10583 .......... .......... .......... .......... .......... .......... 99 ATACATACTT TTGAATAAAA CCTAACTGAA TGGTCATGTG TATAACAAGC TTTATGAATC 10523 .......... .......... .......... .......... .......... .......... 99 GCTAGTAAAG TAGATGGTTT ACTTTAATCA AGTACTTTAT CGTCGATATC TTTAACTACC 10463 .......... .......... .......... .......... .......... .......... 99 AAAACAGAAA AAAAAGGAAA GCTGTTCTTT TACTTCGATC TTCTTGTTTT GTTTCTTGTA 10403 .......... .......... .......... .......... .......... .......... 99 CATCAACCTC CTAGAAGTCA TGACATTTTG CACTTAGAAA TCATGTCCAT TCCTTTGGAT 10343 .......... .......... .......... .......... .......... .......... 99 ATGTGTCCTT ACATGCATAA ATAATGAAAC AAAGCTTAGC TGCAATTTTT TTTTATTGAG 10283 .......... .......... .......... .......... .......... .......... 99 AAAGAAAGCT TAGCTGCAAT TTACAAGTGG TTATAAAGTG TTTGGGCATA AGTTATAGAA 10223 .......... .......... .......... .......... .......... .......... 99 AGATGGATTT GAACCCAACT GTGCAAGATT CTGGAAGGAT TATAAAGTTC TTCCAGTGTT 10163 .......... .......... .......... .......... .......... .......... 99 TGTTCTGCAG CCTGCATGAT TTGTGGTACA TCTAGAAATT TCTCGCAATA GTTTCATCCT 10103 .......... .......... .......... .......... .......... .......... 99 GGTATTCTTC TACGTACCCT ATGTGAAGCC AAACTTCAAG TGAAATATTT GATGCATAAT 10043 .......... .......... .......... .......... .......... .......... 99 AATAACCTGC TAATATGTGT TTGCAGCCTC AGAATTCTAA GTTAGTTATC TAACTTCAAG 9983 .......... .......... .......... .......... .......... .......... 99 TTTCATGTTT ATAGATGTCA TTAACTCCCA AAGATTTAAG TTTTGTGGGC TATACATACA 9923 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....ATGTCA TTAACTCCCA AAGATTTAAG TTTTGTGGGC TATACATACA 145 AAAACTTTGA TGCTGTCAAG GCACTGCGCA ACTCTTCCGG TGAGTCATTT GTTCCCCTTT 9863 |||||||||| |||||||||| |||||||||| ||||||||| AAAACTTTGA TGCTGTCAAG GCACTGCGCA ACTCTTCCG. .......... .......... 184 CAATGCCTTC TACAATTGTG TAATTATACT TTAGTTAGAT GTTTGCGTGT GCTTATCTTT 9803 .......... .......... .......... .......... .......... .......... 184 CATAAAAGTG GACCTCTGAC ACCTATCTAG AAATCTCCTC GGAACTACTG TAACTGCACT 9743 .......... .......... .......... .......... .......... .......... 184 CTCCAAAGAA GCATTGTAGG TTTTCCTCTA ACTTTGGGGG GAGTTTCTGC AAGTTCTTAT 9683 .......... .......... .......... .......... .......... .......... 184 CTGAAAATGA AACCAGTTCA GAGTTCACAA GATTGATATT TCTAATACTT ATTATTGTTA 9623 .......... .......... .......... .......... .......... .......... 184 TTGTTACTAT TCATGATGAT GGTGTTGTAA ATCTTTTTGT TTGTTTATCT GGCTTCTAGG 9563 .......... .......... .......... .......... .......... .......... 184 CTGAATTTGA AGGTTTTGGT ACAACTACTT TGCTTCCTTT CCCAAGCTCT CTGATATTTT 9503 .......... .......... .......... .......... .......... .......... 184 AAGGATGCAT TTCTCGATTG CACATGGTTT ATAATTATTG GTCTGGAATT ATAAAATAAT 9443 .......... .......... .......... .......... .......... .......... 184 AATAAACTAG TGATGCTAAC CTGCAAGAAG TTTTGTGGAA ATTATATTAT CAAGAACCAA 9383 .......... .......... .......... .......... .......... .......... 184 AATGAATGTT TAAACTATTT CAGAAGGCAT ACCAGGCATT AGACTATGTA CCTTCTTGTT 9323 .......... .......... .......... .......... .......... .......... 184 TAACATCCAA TGGCACTTCA TCCGAAATCG GAAACAAATA GATCTTCAAA AGACCGCATG 9263 .......... .......... .......... .......... .......... .......... 184 GACCTTCTGC TATTTTGAAC CTAATCTCTG TTACTGAACT AATGAGTAGT ATCTGTCATG 9203 .......... .......... .......... .......... .......... .......... 184 TTTCTATTTG CTTTATGTGA TGTTAAATGT TCATCTTATC TGTCTACATA TAAGTGCGCA 9143 .......... .......... .......... .......... .......... .......... 184 CAGAGTGATT TCATTCTCAT TTCAATTTTT TCCAGATCCT ACAAGGGACA CATCACCTAG 9083 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATCCT ACAAGGGACA CATCACCTAG 209 GCGGCCGTCA ATTGATTCCA TATTCAGTAA GTGTTGTGAC CTTGTAAATG GTTTAAATAT 9023 |||||||||| |||||||||| |||||| GCGGCCGTCA ATTGATTCCA TATTCA.... .......... .......... .......... 235 CGAACTTCTT ATCCTACTAG TCTAATTAAT ATGACTGCAG ATAATTCTAA GGACTATCCT 8963 |||||||||| |||||||||| .......... .......... .......... .......... ATAATTCTAA GGACTATCCT 255 TCAACAAAGG GAACAAGTGG AGAAATAGAC ACAGATATGA TAACGTCAAC CGGTTGTGCA 8903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACAAAGG GAACAAGTGG AGAAATAGAC ACAGATATGA TAACGTCAAC CGGTTGTGCA 315 ATATCTCCAT GATATCGCCA GAGCTTTATA TTGAAAAAGA AACTAGCAAA GGTGGTGGTA 8843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCCAT GATATCGCCA GAGCTTTATA TTGAAAAAGA AACTAGCAAA GGTGGTGGTA 375 GCATACACCT GTTGTATTTG ATCAGGTTGT TCACCCCTTC ATCAGCATTC CAAGTGTGTT 8783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATACACCT GTTGTATTTG ATCAGGTTGT TCACCCCTTC ATCAGCATTC CAAGTGTGTT 435 TGGCACCATG ATATAAGTGT ACAGTTAATG CTTGAGAAAC TTGGTTGATT CGTAGGACAT 8723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACCATG ATATAAGTGT ACAGTTAATG CTTGAGAAAC TTGGTTGATT CGTAGGACAT 495 GGAAACTGTT GTAGGAAATG TAATGTTTGT GCAATAGAAA CTTAGACTGC TTAATATCGT 8663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAACTGTT GTAGGAAATG TAATGTTTGT GCAATAGAAA CTTAGACTGC TTAATATCGT 555 CCATTGCCCA GGTTGGCAAT CAAATGCTAA CTCTTGTGGC AATTGCTGGT CAGATGAAAT 8603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCCCA GGTTGGCAAT CAAATGCTAA CTCTTGTGGC AATTGCTGGT CAGATGAAAT 615 TTATTACTTC TGGGACCAAT TATGCT 8577 ||||||||| |||||||||| |||||| TTATTACTTT TGGGACCAAT TATGCT 641 hqPGS_C08HBa0167P18.1-_SGN-E297605+ (15202 15152,13085 13038,9968 9884,9107 9057,8982 8577) ******************************************************************************** EST sequence 33 +strand 536 n (File: SGN-E327016+) 1 TAAAGGCTCA TCCTTGGTTC AAGGATATTG AATGGGATAG GCTGTATGAA ATGGAAGCAG 61 CCTTCAAACC AGAAGTTAAT GGAGAGCTGG ACACCCAGAA TTTCATGAAG TATGATGAGA 121 TGGATACTCC AACATCAGCA AGATCTGGTT CAGGACCTTC TCGGAAGATG TCATTAACTC 181 CCAAAGATTT AAGTTTTGTG GGCTATACAT ACAAAAACTT TGATGCTGTC AAGGCACTGC 241 GCAACTCTTC CGATCCTACA AGGGACACAT CACCTAGGCG GCCGTCAATT GATTCCATAT 301 TCAATAATTC TAAGGACTAT CCTTCAACAA AGGGAACAAG TGGAGAAATA GACACAGATA 361 TGATAACGTC AACCGGTTGT GCAATATCTC CATGATATCG CCAGAGCTTT ATATTGAAAA 421 AGAAACTAGC AAAGGTGGTG GTAGCATACA CCTGTTGTAT TTGATCAGGT TGTTCACCCC 481 TTCATCAGCA TTCCAAGTGT GTTTGGCACC ATGATATAAG TGTACAGTTA ATGCTT Predicted gene structure (within gDNA segment 15897 to 8140): Exon 1 15352 15348 ( 5 n); cDNA 1 5 ( 5 n); score: 1.000 Intron 1 15347 15266 ( 82 n); Pd: 0.998 (s: 0), Pa: 0.950 (s: 1.00) Exon 2 15265 15152 ( 114 n); cDNA 6 119 ( 114 n); score: 1.000 Intron 2 15151 13086 (2066 n); Pd: 0.992 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 13085 13038 ( 48 n); cDNA 120 167 ( 48 n); score: 1.000 Intron 3 13037 9969 (3069 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 9968 9884 ( 85 n); cDNA 168 252 ( 85 n); score: 1.000 Intron 4 9883 9108 ( 776 n); Pd: 1.000 (s: 1.00), Pa: 0.872 (s: 1.00) Exon 5 9107 9057 ( 51 n); cDNA 253 303 ( 51 n); score: 1.000 Intron 5 9056 8983 ( 74 n); Pd: 0.978 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 6 8982 8750 ( 233 n); cDNA 304 536 ( 233 n); score: 1.000 MATCH C08HBa0167P18.1- SGN-E327016+ 1.000 536 1.000 C PGS_C08HBa0167P18.1-_SGN-E327016+ (15352 15348,15265 15152,13085 13038,9968 9884,9107 9057,8982 8750) Alignment (genomic DNA sequence = upper lines): TAAAGGTAAT ATTTGAAGCA CTCATCCAAT CACTTTCACT AGAACCTTCA TGTTTCTTCT 15293 ||||| TAAAG..... .......... .......... .......... .......... .......... 5 GTTAATTTAT TTGAAGTGGT TTATCAGGCT CATCCTTGGT TCAAGGATAT TGAATGGGAT 15233 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GCT CATCCTTGGT TCAAGGATAT TGAATGGGAT 38 AGGCTGTATG AAATGGAAGC AGCCTTCAAA CCAGAAGTTA ATGGAGAGCT GGACACCCAG 15173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGTATG AAATGGAAGC AGCCTTCAAA CCAGAAGTTA ATGGAGAGCT GGACACCCAG 98 AATTTCATGA AGTATGATGA GGTATTTCAT GAAATTGAAT GAGTCTTGTA TTTTATTGGA 15113 |||||||||| |||||||||| | AATTTCATGA AGTATGATGA G......... .......... .......... .......... 119 GAAAGTTAAT GACTTTTATA GCCAGTGACA TACACCCTTT TGATACTTTT AAATATCTAA 15053 .......... .......... .......... .......... .......... .......... 119 TGCACAGTCA ATGTCCATCT GTAACACCTA GAATTTTCCT TATTTTATTT ATACATTACT 14993 .......... .......... .......... .......... .......... .......... 119 GTCCCACCAT CTCTATTTAC TTACAAAATG GACTGCAACA TGTGTCTTCT TTTCACTATC 14933 .......... .......... .......... .......... .......... .......... 119 TGTTTACAAT ATTGGTGAAC TGTGAGGAAT GCCTCATCCG AAAGGTTTAG TAGAGGGTAG 14873 .......... .......... .......... .......... .......... .......... 119 ATTTCTATTA TTTGTTTTTA GATCCACAGC ACACCTTCTT GCATGTGGGA CCATGTGAAG 14813 .......... .......... .......... .......... .......... .......... 119 CGCGTGGACC TACTCATCTA AGAGTTTTAT ACTGTTTGTA TGTTTCCCTT TAGAAGATAT 14753 .......... .......... .......... .......... .......... .......... 119 AAGTCAGATA GTAGGCATTC ACACAACCTT CCAAAATAGC AGCCTCTTAA AGCACTATTC 14693 .......... .......... .......... .......... .......... .......... 119 TTTCTCAAAC AAATAACAAA AATCCCATGA TGGTTATTCT CGCATTCAAC AGCATGTGTT 14633 .......... .......... .......... .......... .......... .......... 119 CCTCAATTGT GCATTTGTTT TGGGTTGAAT ATATATATTG GTCTTGGAAG TTGTCGATGA 14573 .......... .......... .......... .......... .......... .......... 119 GTTGCTTAAG TTCAAACTCG ATTGCTATGA GCATGGAGTA AAGTTAGGTT TGAGATCGGA 14513 .......... .......... .......... .......... .......... .......... 119 GAGGGGGTAA TTGTGTGTGT GTTTTAGCTG ACTATTTTTT AGGTTTAGAA AAGAAAAAAA 14453 .......... .......... .......... .......... .......... .......... 119 TGTATGTGTA TATGTATGTG TGTGTGCGCG CACATATTCT GCAGAAATGA AGGAGTTAGG 14393 .......... .......... .......... .......... .......... .......... 119 AAAACAATAA GAGAGATTGA TGCTGAAGAA TTAGTCTTGA TTCTAGATAA AGGTTCTCCA 14333 .......... .......... .......... .......... .......... .......... 119 GAATTCTCCA ATAAATGTGT CAGAAAGAAA GGTCCTTTGC TACCAAGAAT AATTTCTTAG 14273 .......... .......... .......... .......... .......... .......... 119 AGTCAATCGC TCCTACTTTC TTGTAATTTT TTCATTTAAC AAAAAAAGGC ACATTTACGT 14213 .......... .......... .......... .......... .......... .......... 119 TCTACATATT ATTCTTTACT CAAAAACTAG TTGGTACTCT CTCTCTCTCT CTCTCTCTCT 14153 .......... .......... .......... .......... .......... .......... 119 CTCTCTCTAT ATATATATAT ATATATATAT ATATATATAT ATATATATAC ACGCCTCTTT 14093 .......... .......... .......... .......... .......... .......... 119 TTTCTTTTAA CTTTCTTTTG GCCATTTTTT CAATCAAAAT TCATCTGATT CCTCAGTTCT 14033 .......... .......... .......... .......... .......... .......... 119 GTAGTTTGAA CGTCACAACT CATCAACTAC CTTGAGTACT GTCCACTCAC CCCCAGTGTA 13973 .......... .......... .......... .......... .......... .......... 119 AATGAAGAGC ACAGTTCAGG AGGCACACTG TATTGAGTGT AACGATAACT GTCCTGAGCC 13913 .......... .......... .......... .......... .......... .......... 119 TTTTACTATT TTTAAGTGAA ATAATGCTCT TCAAAAAACT GACATTGCAA AAGCTTGCAA 13853 .......... .......... .......... .......... .......... .......... 119 TCATATCTAT TGTTCGACTT GTATGCTTAG ATAAGCAACC TATAAAAAGG AAATGAAATG 13793 .......... .......... .......... .......... .......... .......... 119 CTGTTTTTCC AGGCTTGCTT CTTTTTTTCT TGCGCCAAGC ATGTACAAAG TTTTGTTGAT 13733 .......... .......... .......... .......... .......... .......... 119 GGGCAACATT CAGACTCAAC CTAGGATGTA TATTTGCTTT TGTACAGTGT TGAAGTGTGT 13673 .......... .......... .......... .......... .......... .......... 119 GAATCACCTC GTTTTTCAAG TTAAATTGTT AGAGGCTGTA ATCTGTGATA TGTCCCCTAA 13613 .......... .......... .......... .......... .......... .......... 119 TGACCATTTT CAAAAGAGTT TTCTCTCTTC CATTCTCTTT TCACAAATAA GTTAAGACAA 13553 .......... .......... .......... .......... .......... .......... 119 GAAACTGGTA GAGTTTCTTG CAATGCAATT TGTATCCTGC CTGTAATCTC AGTGTCTCAC 13493 .......... .......... .......... .......... .......... .......... 119 TTTCTAAAAG CAGTTGCTTT CTATTACTCC ATGAGTATGG TGCTTTTTTG ACTAGCTAAC 13433 .......... .......... .......... .......... .......... .......... 119 TTTAAGTCAA GATCTAAATT TTATCTGTGC TGCTACGCTT GTATTAGGTA AGTCAAGCTT 13373 .......... .......... .......... .......... .......... .......... 119 TCTCCTTAAT CTCTGTTTCT TGTCAGACTT AGTCACAATA TTGTGCATGG TCTTTAGTTC 13313 .......... .......... .......... .......... .......... .......... 119 TGGCATCTTT TATTGACGAT TCATGCCGAG GATTTTGCTT TGTGATTTCA AACTAGTAGT 13253 .......... .......... .......... .......... .......... .......... 119 CCTCACTTTT TCAATTTCCT ATTGGCAAGA ATATGCTTGA TTCACATGTT AGCCTTCTGA 13193 .......... .......... .......... .......... .......... .......... 119 AACTATACTT GGTGGATCTA TAGTTTGTCA CCTTTATCAT CTAGTTCAAA TGTAGTCTGT 13133 .......... .......... .......... .......... .......... .......... 119 TTCTCCTTGT AAGTAACTGT TTTCTTTCCT TCTGGACTTC TTCATAGATG GATACTCCAA 13073 ||| |||||||||| .......... .......... .......... .......... .......ATG GATACTCCAA 132 CATCAGCAAG ATCTGGTTCA GGACCTTCTC GGAAGGTTTG TAACCACTGG TTCTTTTCTG 13013 |||||||||| |||||||||| |||||||||| ||||| CATCAGCAAG ATCTGGTTCA GGACCTTCTC GGAAG..... .......... .......... 167 TCTGTGTTTC AATACCTTTT GTATATGATA GTATTTTATG GCCAATGAAC TGATAAAGTA 12953 .......... .......... .......... .......... .......... .......... 167 TCTGCATCCT TATTACTGCC ACTTGCCTAA AATTCTGTAG TACTAAGCAA AAGCCGGAAG 12893 .......... .......... .......... .......... .......... .......... 167 CTAGAAGGGT TAACACAGAA CTTACTGTCG AAACGTGTTT TGGCTCCAAT CAAACATAAA 12833 .......... .......... .......... .......... .......... .......... 167 AACTACTTAA ATCTGTTTCC ATCCACTCTT ATCCAAAAAT ATAAATGCAA GCTATGTTGG 12773 .......... .......... .......... .......... .......... .......... 167 ATATTGCAAA TCAGTAGCTC TCTAAATATT TCTAGTTTCT TTTTTTTTAA TGCTAGTTAT 12713 .......... .......... .......... .......... .......... .......... 167 GTTGGATTGC AAATCAGTAG CTCTCTATAT ATTTCTAGTT CCTTTTTTTT TCTTTTGAGA 12653 .......... .......... .......... .......... .......... .......... 167 AGGTAACATA TTTGTATATA GATATAAAGT TGGACCTCCC ACTTCACAAT TGTGTGAGTC 12593 .......... .......... .......... .......... .......... .......... 167 CCCCATGATT ACAAAATGCC ATGCAAAATA TCTCTGCCAT CCTATATCTT CTTTATAAGG 12533 .......... .......... .......... .......... .......... .......... 167 AATTAGAACA TCGAAATTTG GACCGTGATC TTCTCAGCTT ATCCCTTTAC ACCAAAAGTA 12473 .......... .......... .......... .......... .......... .......... 167 AAAAAAGATT ACACTTCATT TTCTACTTCT GGGAGTTGCT AGTCTTCTCT GCAAAACATC 12413 .......... .......... .......... .......... .......... .......... 167 TTTGTTTTCT TTCCCAGATT GTCCACCAAA TGCTAGCTGG GACAATCCTC CATGTCTTTT 12353 .......... .......... .......... .......... .......... .......... 167 TGTTGCCAGT TGGGTGGCCT TCACTGTTCC AGCAATTGAG AAATTACGAG ATACTTCTTG 12293 .......... .......... .......... .......... .......... .......... 167 GCGTTACCTA TTGTATACCC CTCAAGTTTA AAAACATCCT CCATAGCTGT GAAGTTCCCT 12233 .......... .......... .......... .......... .......... .......... 167 TACAATGTAA AAAAAGATGA ATATCTGGCT TTGCCTCTTC TCCACATATG TAACAAGGGT 12173 .......... .......... .......... .......... .......... .......... 167 ATTATCCTCT CCTGGCAAGA TTTTCCTGTG TAAGAACTGC TCCTCTGGCC AGTAACCAAG 12113 .......... .......... .......... .......... .......... .......... 167 TAAATAATGC AACTTCATAT GGAATTTTAA CCTTCCATAT CATTTTCCAT GACCAAACTT 12053 .......... .......... .......... .......... .......... .......... 167 TCCAAAACAA TAATTAGATG TGTTGAATTT CCTTGAGCTG AACTAACAGA GAAGTTCCCT 11993 .......... .......... .......... .......... .......... .......... 167 GTTTTATGTC CTTGCCATAT CAACTGATCC TAGTAATCTG CAGTTCCTGA ACTGCTCCAG 11933 .......... .......... .......... .......... .......... .......... 167 CATTTTATAT AATTCAACCA CTCTGTCCAT CTCCCAATCA AAAGGAATCT TCTGAAGGTA 11873 .......... .......... .......... .......... .......... .......... 167 AGGTTCCAGC CTTGAGGACT CCAATCCTCT CCACCTTTAG CTTCTTGTTG TTGATTGATC 11813 .......... .......... .......... .......... .......... .......... 167 CTGTGAATAT CAGGAAGTGA TTTACCAAAG CATCACTTGG CAACCAATTG CCGTTCCAAA 11753 .......... .......... .......... .......... .......... .......... 167 AATAAATCTT TATACCATTA CCAATTCTAA GAGTGGTTTT GGTGCTGAAT CCTGGCCAAG 11693 .......... .......... .......... .......... .......... .......... 167 GATTCCTTAT GGGCCTCCAT AGATCGACTC CATAAGGAAG GCTCATTTAC CTTGTTGGTG 11633 .......... .......... .......... .......... .......... .......... 167 GTCTACTGTT CTGTACTGTA TCTCTCCTAA TCACCTCCTT CCACAATAAA TACTTATTTG 11573 .......... .......... .......... .......... .......... .......... 167 AAGAAACTTC CATGGCCATC TCATCATCAA GCTTCAGTTC TGTACCTTTT AAGCTTTTTT 11513 .......... .......... .......... .......... .......... .......... 167 CCCCAAACCC CCATCCTTAT GCTGATTACC AGTGAATCCC ATTTGACAAG GTCAATTTTT 11453 .......... .......... .......... .......... .......... .......... 167 TTCTTTTCAC TGTTTCAATC CCATAGAAAA TTTCTTCTTA AAGAATCAGT TCTCTCGGCA 11393 .......... .......... .......... .......... .......... .......... 167 ACAGCCAACA TTCACTAGAA TAGGGAATAG AGACATCATG TATGTTGGCA TAGCATCCAG 11333 .......... .......... .......... .......... .......... .......... 167 AACTGAGTTT ATTAGAGTAA GCGGCACCCA AATGAAAGGT ACTGGCATTT CCTATGAGCC 11273 .......... .......... .......... .......... .......... .......... 167 AGTTTCTTCT CACATTTTTC TATTACTCCA TTCCATATCC TATTTGATTT GCTTCCCAGA 11213 .......... .......... .......... .......... .......... .......... 167 GGAATCCCCA AGCATACAGT TGGCAGTTCC CCAACTTTTC TGTACAAATA TTAGCCAAAC 11153 .......... .......... .......... .......... .......... .......... 167 TTAGGATATC ATTACATCAT TAACTCGATA TACAATATCT CTTGTTCCAG CTAATATGTA 11093 .......... .......... .......... .......... .......... .......... 167 AGCCTGAGAT ATCTTCAAAC AGAATGAAAA AATCACCCTC ATCATCATCG ACTGTTCTCT 11033 .......... .......... .......... .......... .......... .......... 167 GTCAACTTCA CAAAATACAA GAAAATCATC AGCATACTGA AGGTGAGAAA TTGCCATACT 10973 .......... .......... .......... .......... .......... .......... 167 TCAGTCAGCT CTTGTGCTAA CTTTGAACCC CTGAACCAAT TATTTTCCTG TGCACTTTTC 10913 .......... .......... .......... .......... .......... .......... 167 ACCAAACCAT TCAGTCCTTC CATGGCTATG ATGAAAACTG AAAAGAAAAA AGAGAGAGAG 10853 .......... .......... .......... .......... .......... .......... 167 GATCTCCTTA CCTTAAGCCT CTCTGGGAAG GAAAAAAACC AGACAGGGTA CCATTTATTA 10793 .......... .......... .......... .......... .......... .......... 167 GTACTGAAAA TTTGACACTG CTTATGCAAA ACTTAAATTT ACCTAATCCA TCTTTCGCCA 10733 .......... .......... .......... .......... .......... .......... 167 AATCCTATTT CCTCATCACA TCCAGCGAGT ATTTCTTATG TGTGTATATA TATATTTCAG 10673 .......... .......... .......... .......... .......... .......... 167 AGGCTTGTAG ATTTTTGATA TATTTTCTAT ATCTTTTCTT TTCTAGTAAC AGATATATAG 10613 .......... .......... .......... .......... .......... .......... 167 CCCTAGATCC AATTGACACC ACATTATTGC ATACATACTT TTGAATAAAA CCTAACTGAA 10553 .......... .......... .......... .......... .......... .......... 167 TGGTCATGTG TATAACAAGC TTTATGAATC GCTAGTAAAG TAGATGGTTT ACTTTAATCA 10493 .......... .......... .......... .......... .......... .......... 167 AGTACTTTAT CGTCGATATC TTTAACTACC AAAACAGAAA AAAAAGGAAA GCTGTTCTTT 10433 .......... .......... .......... .......... .......... .......... 167 TACTTCGATC TTCTTGTTTT GTTTCTTGTA CATCAACCTC CTAGAAGTCA TGACATTTTG 10373 .......... .......... .......... .......... .......... .......... 167 CACTTAGAAA TCATGTCCAT TCCTTTGGAT ATGTGTCCTT ACATGCATAA ATAATGAAAC 10313 .......... .......... .......... .......... .......... .......... 167 AAAGCTTAGC TGCAATTTTT TTTTATTGAG AAAGAAAGCT TAGCTGCAAT TTACAAGTGG 10253 .......... .......... .......... .......... .......... .......... 167 TTATAAAGTG TTTGGGCATA AGTTATAGAA AGATGGATTT GAACCCAACT GTGCAAGATT 10193 .......... .......... .......... .......... .......... .......... 167 CTGGAAGGAT TATAAAGTTC TTCCAGTGTT TGTTCTGCAG CCTGCATGAT TTGTGGTACA 10133 .......... .......... .......... .......... .......... .......... 167 TCTAGAAATT TCTCGCAATA GTTTCATCCT GGTATTCTTC TACGTACCCT ATGTGAAGCC 10073 .......... .......... .......... .......... .......... .......... 167 AAACTTCAAG TGAAATATTT GATGCATAAT AATAACCTGC TAATATGTGT TTGCAGCCTC 10013 .......... .......... .......... .......... .......... .......... 167 AGAATTCTAA GTTAGTTATC TAACTTCAAG TTTCATGTTT ATAGATGTCA TTAACTCCCA 9953 |||||| |||||||||| .......... .......... .......... .......... ....ATGTCA TTAACTCCCA 183 AAGATTTAAG TTTTGTGGGC TATACATACA AAAACTTTGA TGCTGTCAAG GCACTGCGCA 9893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTTAAG TTTTGTGGGC TATACATACA AAAACTTTGA TGCTGTCAAG GCACTGCGCA 243 ACTCTTCCGG TGAGTCATTT GTTCCCCTTT CAATGCCTTC TACAATTGTG TAATTATACT 9833 ||||||||| ACTCTTCCG. .......... .......... .......... .......... .......... 252 TTAGTTAGAT GTTTGCGTGT GCTTATCTTT CATAAAAGTG GACCTCTGAC ACCTATCTAG 9773 .......... .......... .......... .......... .......... .......... 252 AAATCTCCTC GGAACTACTG TAACTGCACT CTCCAAAGAA GCATTGTAGG TTTTCCTCTA 9713 .......... .......... .......... .......... .......... .......... 252 ACTTTGGGGG GAGTTTCTGC AAGTTCTTAT CTGAAAATGA AACCAGTTCA GAGTTCACAA 9653 .......... .......... .......... .......... .......... .......... 252 GATTGATATT TCTAATACTT ATTATTGTTA TTGTTACTAT TCATGATGAT GGTGTTGTAA 9593 .......... .......... .......... .......... .......... .......... 252 ATCTTTTTGT TTGTTTATCT GGCTTCTAGG CTGAATTTGA AGGTTTTGGT ACAACTACTT 9533 .......... .......... .......... .......... .......... .......... 252 TGCTTCCTTT CCCAAGCTCT CTGATATTTT AAGGATGCAT TTCTCGATTG CACATGGTTT 9473 .......... .......... .......... .......... .......... .......... 252 ATAATTATTG GTCTGGAATT ATAAAATAAT AATAAACTAG TGATGCTAAC CTGCAAGAAG 9413 .......... .......... .......... .......... .......... .......... 252 TTTTGTGGAA ATTATATTAT CAAGAACCAA AATGAATGTT TAAACTATTT CAGAAGGCAT 9353 .......... .......... .......... .......... .......... .......... 252 ACCAGGCATT AGACTATGTA CCTTCTTGTT TAACATCCAA TGGCACTTCA TCCGAAATCG 9293 .......... .......... .......... .......... .......... .......... 252 GAAACAAATA GATCTTCAAA AGACCGCATG GACCTTCTGC TATTTTGAAC CTAATCTCTG 9233 .......... .......... .......... .......... .......... .......... 252 TTACTGAACT AATGAGTAGT ATCTGTCATG TTTCTATTTG CTTTATGTGA TGTTAAATGT 9173 .......... .......... .......... .......... .......... .......... 252 TCATCTTATC TGTCTACATA TAAGTGCGCA CAGAGTGATT TCATTCTCAT TTCAATTTTT 9113 .......... .......... .......... .......... .......... .......... 252 TCCAGATCCT ACAAGGGACA CATCACCTAG GCGGCCGTCA ATTGATTCCA TATTCAGTAA 9053 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| .....ATCCT ACAAGGGACA CATCACCTAG GCGGCCGTCA ATTGATTCCA TATTCA.... 303 GTGTTGTGAC CTTGTAAATG GTTTAAATAT CGAACTTCTT ATCCTACTAG TCTAATTAAT 8993 .......... .......... .......... .......... .......... .......... 303 ATGACTGCAG ATAATTCTAA GGACTATCCT TCAACAAAGG GAACAAGTGG AGAAATAGAC 8933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ATAATTCTAA GGACTATCCT TCAACAAAGG GAACAAGTGG AGAAATAGAC 353 ACAGATATGA TAACGTCAAC CGGTTGTGCA ATATCTCCAT GATATCGCCA GAGCTTTATA 8873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGATATGA TAACGTCAAC CGGTTGTGCA ATATCTCCAT GATATCGCCA GAGCTTTATA 413 TTGAAAAAGA AACTAGCAAA GGTGGTGGTA GCATACACCT GTTGTATTTG ATCAGGTTGT 8813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAAAAGA AACTAGCAAA GGTGGTGGTA GCATACACCT GTTGTATTTG ATCAGGTTGT 473 TCACCCCTTC ATCAGCATTC CAAGTGTGTT TGGCACCATG ATATAAGTGT ACAGTTAATG 8753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCCCTTC ATCAGCATTC CAAGTGTGTT TGGCACCATG ATATAAGTGT ACAGTTAATG 533 CTT 8750 ||| CTT 536 hqPGS_C08HBa0167P18.1-_SGN-E327016+ (15352 15348,15265 15152,13085 13038,9968 9884,9107 9057,8982 8750) ******************************************************************************** EST sequence 43 +strand 521 n (File: SGN-E267033+) 1 CCAGATACCA ATGATGGAAA TAAGTGGAAA ACCCCCCGCG AAAAGCTTCA TCATTGGCAG 61 ATAAACAGAA GGAAATTGGC CTTTTCAACT GTCGGTACAC CAGACTATAT TGCTCCTGAG 121 GTACTATTGA AGAAAGGATA TGGAATGGAA TGTGATTGGT GGTCCCTTGG TGCAATTATG 181 TACGAAATGC TCATTGGTTA CCCTCCATTC TATGCCGATG ATCCGATAAC TACTTGCAGA 241 AAGATAGTTC ACTGGAGAAA TCACCTAAGA TTTCCTGAAG ATACTAAACT CTCACATGAG 301 GCAAAGGATC TTATTTGCAG GTTACTATGT GATGTTGAGC ATAGACTGGG AACTGGAGGT 361 GCAAACCAAA TAAAGGCTCA TCCTTGGTTC AAGGATATTG AATGGGATAG GCTGTATGAA 421 ATGGAAGCAG CCTTCAAACC AGAAGTTAAT GGAGAGCTGG ACACCCAGAA TTTCATGAAG 481 TATGATGAGA TGGATACTCC AACATCAGCA AGATCTGGTT C Predicted gene structure (within gDNA segment 21186 to 12444): Exon 1 20586 20509 ( 78 n); cDNA 1 78 ( 78 n); score: 1.000 Intron 1 20508 20024 ( 485 n); Pd: 0.991 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 20023 19944 ( 80 n); cDNA 79 158 ( 80 n); score: 1.000 Intron 2 19943 16128 (3816 n); Pd: 0.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 16127 16043 ( 85 n); cDNA 159 243 ( 85 n); score: 1.000 Intron 3 16042 15480 ( 563 n); Pd: 0.990 (s: 1.00), Pa: 0.845 (s: 1.00) Exon 4 15479 15348 ( 132 n); cDNA 244 375 ( 132 n); score: 1.000 Intron 4 15347 15266 ( 82 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 15265 15152 ( 114 n); cDNA 376 489 ( 114 n); score: 1.000 Intron 5 15151 13086 (2066 n); Pd: 0.992 (s: 1.00), Pa: 0.993 (s: 0) Exon 6 13085 13054 ( 32 n); cDNA 490 521 ( 32 n); score: 1.000 MATCH C08HBa0167P18.1- SGN-E267033+ 1.000 521 1.000 C PGS_C08HBa0167P18.1-_SGN-E267033+ (20586 20509,20023 19944,16127 16043,15479 15348,15265 15152,13085 13054) Alignment (genomic DNA sequence = upper lines): CCAGATACCA ATGATGGAAA TAAGTGGAAA ACCCCCCGCG AAAAGCTTCA TCATTGGCAG 20527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGATACCA ATGATGGAAA TAAGTGGAAA ACCCCCCGCG AAAAGCTTCA TCATTGGCAG 60 ATAAACAGAA GGAAATTGGT ATGCAATATT ACTGATATAT GTTGTTTCTT CTTTGCATTG 20467 |||||||||| |||||||| ATAAACAGAA GGAAATTG.. .......... .......... .......... .......... 78 TGTGAGGATT TACAGAATGT CATGGAAACA AAATTCACGT GTTGCAACAT GGAACCCAAC 20407 .......... .......... .......... .......... .......... .......... 78 AAGCCACTAC CTGCTAGGTG AACCAATAAT ACAACCCAAA GCATAGTATA AGAAACATCT 20347 .......... .......... .......... .......... .......... .......... 78 TTATAGGAAC CCCTAAATAA ATGAAAAGGA TATCTCAAAA CAGCAGAAAG CTAATATAAG 20287 .......... .......... .......... .......... .......... .......... 78 ATACAAAATC ACGTGTTATA GTTGAATGAA TTTATCTTGT TCCAAACACT TGCGCTTATG 20227 .......... .......... .......... .......... .......... .......... 78 TAATACCAGA TTATTGCAGG AATGACAAAT TGTATTGGCT TTTATTTCAG TCAATGAAGA 20167 .......... .......... .......... .......... .......... .......... 78 ATGCTTTTTT GCAATATGTC AATAACTCTG ATATAAAATC TTAATATTCA CTTTTGTAGA 20107 .......... .......... .......... .......... .......... .......... 78 CACTAAATTT AGATCTGTGT TATTTAGCAA GTATTGAATT TTCTATGTAT TTAAAGCTAA 20047 .......... .......... .......... .......... .......... .......... 78 TTTTTGTCTT CTTCATCTAA AAGGCCTTTT CAACTGTCGG TACACCAGAC TATATTGCTC 19987 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCCTTTT CAACTGTCGG TACACCAGAC TATATTGCTC 115 CTGAGGTACT ATTGAAGAAA GGATATGGAA TGGAATGTGA TTGGTTAGTG TTCATTCCGA 19927 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGAGGTACT ATTGAAGAAA GGATATGGAA TGGAATGTGA TTG....... .......... 158 AAGTAGAATT AGCTTTTTTG CATAGATCAC CAGGAGTTCT GGGATTCTCT GCTCATGCAT 19867 .......... .......... .......... .......... .......... .......... 158 GAATCAATGT GACAAATGTC TAAATGTCAA TAGCGATACC TTCTTCAAGT TGGTAAATAA 19807 .......... .......... .......... .......... .......... .......... 158 ATTTGTTGAA CTAATTGATG GATTTCCCTC CCAATATTTA CCTTGGATAC TTCTCTTTTG 19747 .......... .......... .......... .......... .......... .......... 158 ATTAGTTCGA TTGCTAACAT ATGTGGTGGT ACCTTTTACT GATAATGATA ATTAAAAAAC 19687 .......... .......... .......... .......... .......... .......... 158 TGTATTCTCT GTGTTTTATT TTAGGGAGAA CTCATCAGTG GCCACCTAAA CTTGGCATGA 19627 .......... .......... .......... .......... .......... .......... 158 ATTTTCACTT AGACACTTCA ACAAGTTTTT GTTCATTTTA GACACTTCAT GGCATGCACA 19567 .......... .......... .......... .......... .......... .......... 158 ACTATGTCAT TTTGACACTT TTTCGACAAT CTGCCAAATT TGTTAGGTGT GTGTAACACA 19507 .......... .......... .......... .......... .......... .......... 158 TTCACTAATG ACATGTCAAA ATGACGAATT AAATAAAGAC ATGTGGCATA AAATTAATTA 19447 .......... .......... .......... .......... .......... .......... 158 TTAAACGATG AATTTTGAGT AGGAAAAAAA CTACCAATGA CTCATTGACA TGTCTTTAAC 19387 .......... .......... .......... .......... .......... .......... 158 CAAATAATTA ATGCAAGTCA AAAATTGTTG TTTTAGTACA TAAATATGGA GTCCCATTTT 19327 .......... .......... .......... .......... .......... .......... 158 TTCTACTAAA AATTATATAG CTTATCTATT TAATTTGAAC TTTTCCTTGA TTATGATGTA 19267 .......... .......... .......... .......... .......... .......... 158 AGAAGACATA CAAATGGATT GGAACTAAAA TTGTTTATGG TTAAGGTAGG ATTTAATAAT 19207 .......... .......... .......... .......... .......... .......... 158 TGAAAATATG ATTTCCTTCC ATTTCTGAGT GTTTTTTTTT TCTTCTTGAG ATTTGTGTTG 19147 .......... .......... .......... .......... .......... .......... 158 GTTTTTCTCA AATTATTTTG AGGAGGAAGA AGGACAACAA AATAAGTTAA AGTATTTAAG 19087 .......... .......... .......... .......... .......... .......... 158 CTTAAATTTG TTTTTTTTTA AACTGTTAAC TTTAGTCTAT ATATCCACAG GTTTACTACA 19027 .......... .......... .......... .......... .......... .......... 158 ACAAAAAGTT CCCCTTTAAA AGTTTTACAA CTTACAGAAT AAAATAGTCT TAGTCTAAAC 18967 .......... .......... .......... .......... .......... .......... 158 TGCTACCTGT AAATAGCACA TCAAAGATAT CTTCTGTCCT AGTTAATATA TCTTGTTCAC 18907 .......... .......... .......... .......... .......... .......... 158 ACCAACAATA GAAAAGAGCT AAGCAGTCCA TCTTGATCTT CTGTAAACTA TTCTGCCAAT 18847 .......... .......... .......... .......... .......... .......... 158 TTTCAAAACT CCTGCTGTTT CTCTCTTTCC AGATTGTCCA CCAAATACAT GCCGGGATAA 18787 .......... .......... .......... .......... .......... .......... 158 GTTTCCATCT CTTCTCCTAG TCAGAAGCAT TGCCATCTCT ATTCCAGCTG CTCAGGATTC 18727 .......... .......... .......... .......... .......... .......... 158 CTTTAGTGCT TCCTGGTTTC ACCCATCTTA TCCCCTTTAG ACAGATGAAC ATTCTCCATA 18667 .......... .......... .......... .......... .......... .......... 158 ATTGTTTTGT CCATGTACAA TGCAAAAAAA GATGGTTAAT TGTCTCAGCA TGTTCTCCAC 18607 .......... .......... .......... .......... .......... .......... 158 ATAAAGTACA TCTCGAAGCC AACTGATAGC CTCTTTTCTT TAGATTTTAA TGAGTCAAAA 18547 .......... .......... .......... .......... .......... .......... 158 CTGCTTCTTT TGTTGATAGC CCACATGAAG CAGTTTACTC TGTAGGGTAC TTTTGGTTTC 18487 .......... .......... .......... .......... .......... .......... 158 CAGGTGATCT TCCATGGCCA TTCCATCTCC TGTCCAGCAT TCTTGTTGAG TTCCTTATAC 18427 .......... .......... .......... .......... .......... .......... 158 ACTGAATTTA CTGAGAATTG ACCTTTGGTA TCATTCTGCC AAACTAATAA GTCCTTCTTT 18367 .......... .......... .......... .......... .......... .......... 158 TTCAGTGAGG TTGCTGAAAG AGCCTACTGA ATCTGCCACT TTGTCAATCT CTCTATCCTG 18307 .......... .......... .......... .......... .......... .......... 158 TAGGTTCCTC CTTGAGAACA AATTCCATCC TTGTCCAGTC CACATTGTAG CCACAGTGGC 18247 .......... .......... .......... .......... .......... .......... 158 CTGTTAATGT TGGCATAAAG TGAACAATTC AGGATGCAAC TGTTTCATAG GGACAGGACC 18187 .......... .......... .......... .......... .......... .......... 158 CATTCCACTT ATCCTCCCAG AAGGATGTCT TTGACCCATC TCCCACTTCT ACCTTGGTTC 18127 .......... .......... .......... .......... .......... .......... 158 TGTGATATAG CACTGGCCAT AGATTTCTGA TTCCCCTCCA TACGGTGCAT TTTATGGAGT 18067 .......... .......... .......... .......... .......... .......... 158 ACTTATCATT TTAGTCATCC GCTTATCTTC CATGCCATAT TTTGCTATGA TGACCTCTTA 18007 .......... .......... .......... .......... .......... .......... 158 CCAGAGCATG TTATCTTCAT TTGCCAACTT CCACAACCAC TTCATCATTA GGCTCTGGTT 17947 .......... .......... .......... .......... .......... .......... 158 TTGTTTCCTC AGATTTCTTA TACCTAGGCC TCCTGTGTTT TTACTCACCA TCAGTTCTTT 17887 .......... .......... .......... .......... .......... .......... 158 CCATTTAACA AGATGAAACT TCTTCTTATC TTCACTGCCT TGCCATAAGA AATTTCTTCT 17827 .......... .......... .......... .......... .......... .......... 158 AAGAGCATCA ATGCTATTAG ATACACTGGC AGGCATAGGG AAGACTGACA TCATATAAGA 17767 .......... .......... .......... .......... .......... .......... 158 GGGTAATGCA TCCATCACAC TGTTAATTAA AGTCAATCTT CCTCCCAAGG ACAAGTACAA 17707 .......... .......... .......... .......... .......... .......... 158 ACTCTTCTAG CTAGTGAGTC TCTTTTCACA TTTCTCCAGT ACCCCATTCC ATATGCCTTT 17647 .......... .......... .......... .......... .......... .......... 158 GGACTTGCTT TTTTAGCTCC CAAAGGCATA CCTAGGTAAG CAGTTGGAAG CTCCTCAACC 17587 .......... .......... .......... .......... .......... .......... 158 TTGCCTCCTA GTGTTCTGGT CAAACCTTCT GTATTAAGCA CACTATTGAT AGGATAGTGA 17527 .......... .......... .......... .......... .......... .......... 158 AGCTTTTCCC CCAATAAGCT TAAAATTTAT GGGCACTAGA ATTCACTTTT TGTTTGTGGC 17467 .......... .......... .......... .......... .......... .......... 158 ATTGTCAAAT TTATTTCACC ATGGAAAGAG TTTAAGCTTT GAAAATGGTA GCCAAAAAAT 17407 .......... .......... .......... .......... .......... .......... 158 GGGGAAGAAG AAGAAGAAAA AAAAGTTAAA TTTGATAAAA TGAGGCTCTC ACGCGCGTCC 17347 .......... .......... .......... .......... .......... .......... 158 AGTGAGTATA TCACACTTGC TATGCCATCT CAGCAGAAAG TCTCGAATTA ACACAGCGGG 17287 .......... .......... .......... .......... .......... .......... 158 ACATAAAATG AATGGAGCTT AGTTAAGGTG TCTAAGTGAA AATTAGTGCC AACTTTAGGT 17227 .......... .......... .......... .......... .......... .......... 158 GGCCACCGAT GGGTTTGGCC TTTATTTTAT AAGATATTCT ATTCTTTTTG GTGAAGATAT 17167 .......... .......... .......... .......... .......... .......... 158 ACTTTCTTTT CAGTCTGCTC AGAAAAGTTC GACATATTTC TATATTTGGA AATTCTTTAG 17107 .......... .......... .......... .......... .......... .......... 158 TTTGAACATT CTGATTTTAT CCTAATTGAC AATGTCATGT TTAAGGCAAT TAGATATTAA 17047 .......... .......... .......... .......... .......... .......... 158 GGGTACTTTT GGTGCGTCAT ATTCTGCCTG ATGTAAAACC TTTCTTTTCT TAAACTCCTT 16987 .......... .......... .......... .......... .......... .......... 158 ATCCATAATA AAATGAAGTA GAGGAGTCAA AATTTGTGGC ACCTCTATGT TCATCTTAAG 16927 .......... .......... .......... .......... .......... .......... 158 TAAATTCAAT CTAGCAATAC CTATTAGTGG CAAACAAAAA ACAAAAAAGA ACCCTACTAG 16867 .......... .......... .......... .......... .......... .......... 158 ACAAGGAATG GAATGGTCAA GTAACCACTA ATAACAGAAA AGAAAGCAAA GTTAGATACA 16807 .......... .......... .......... .......... .......... .......... 158 AATGGAGGTT GAGAAAGCAG ACTAAGGTTA TCTGGTGTTT TTAGTTGGGC TGCCTGCTGC 16747 .......... .......... .......... .......... .......... .......... 158 CTGCTTGTGT TGGGAAGGCA AAGGAGAAGT AGGGAGGAGT GAGGACATCA GTGTTAGCAT 16687 .......... .......... .......... .......... .......... .......... 158 GGGAGGATAC TGCATGAGGT AGTGGGATGG GGGACAAAGA AAGATTTTGG AGCAGTTGGA 16627 .......... .......... .......... .......... .......... .......... 158 AGAGGGGGCT AGAGAAGAAT TTCTCCCTGG GGCGACAAAA CATGTTAATT TGAAGGTGAA 16567 .......... .......... .......... .......... .......... .......... 158 TGGAGTAAGA GTTTCTTGAC TTTAGTCCAT GGAAAGGTTA GGAAGAAAGA AGTAGGATAT 16507 .......... .......... .......... .......... .......... .......... 158 ATCTGTGAGG GGTTCCACCT GCCTCCGTTT ATGACCAAGT GGAGAGCTGT AAATTAAGTG 16447 .......... .......... .......... .......... .......... .......... 158 CTTAACCTCC CCCCCCCCCC CCCCTTCAAG CCTTCACCAT TCTGGGGATA TGATATATCT 16387 .......... .......... .......... .......... .......... .......... 158 GATGCTACAA GATCTAGTGC CTCATCTGCA CAACAATCTC TAGTGGATGA GGCAAATTGT 16327 .......... .......... .......... .......... .......... .......... 158 ATTTTGGGAT TTCGTGGAAC TTCACTGGAA GCTTGACCAT ATCCACAGAC CTATGTTTTC 16267 .......... .......... .......... .......... .......... .......... 158 ACTTTAGTTT GATGAGGACT GCAGGAAAAT GCTTTTGTTT TCTAACCCGT TGTATAATTT 16207 .......... .......... .......... .......... .......... .......... 158 CTAGTTATTT GCTAAAGTAC AATGAACCAT GTTGTGCTTT ATGTATTTCT CATCTTTTTC 16147 .......... .......... .......... .......... .......... .......... 158 TACTATACAC TACATGCAGG TGGTCCCTTG GTGCAATTAT GTACGAAATG CTCATTGGTT 16087 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGGTCCCTTG GTGCAATTAT GTACGAAATG CTCATTGGTT 199 ACCCTCCATT CTATGCCGAT GATCCGATAA CTACTTGCAG AAAGGTAGCA TCTTTACTTT 16027 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACCCTCCATT CTATGCCGAT GATCCGATAA CTACTTGCAG AAAG...... .......... 243 CTGTGTTCTT AAAATATGCT GTATGCTTTC CGTTTTTTTT ATGATAAGGA TATCTACTGC 15967 .......... .......... .......... .......... .......... .......... 243 TTCTGAGATA ACAGAAAGTG CCTTCTTCTT TCACTGTAAA AATCAAGAGA ATGGTAGAAA 15907 .......... .......... .......... .......... .......... .......... 243 AGTTTGATGC TAAGAATTTG TTGCAAAATG ACCACATACA AAGAACAAGA ATGCTTTGTA 15847 .......... .......... .......... .......... .......... .......... 243 TGCAATCTCA TCCGAGTATG AACCACCTCT CTTTGCTGAT GCCGGAGAAC TGATAGCTTG 15787 .......... .......... .......... .......... .......... .......... 243 GACAGCTGAT GTCTGGACCT TTTCACGTGA TGCTTAACCC CTTAGATTAG TCTCTTTCGT 15727 .......... .......... .......... .......... .......... .......... 243 TTGGTTAATC CGGGTCTAAG TCTTCTACCT TTTGCACTAC AAGTCTAAGA TGTATTGCAT 15667 .......... .......... .......... .......... .......... .......... 243 TCATAGTGAT ACGCTTGCCA GTGCTACAAT CAATGTTTAC TATGTGAACG TGGTGTATTA 15607 .......... .......... .......... .......... .......... .......... 243 GTGACTATCT CTGTATTATA CCAACTAAAA CGTACTGATT GCCTTCGTGT TGAAGTAAAC 15547 .......... .......... .......... .......... .......... .......... 243 CTTCTTTTCT GGTTCTCCTG CTACTTCCAA ATTTATCCGA TTCTAACTCC ATGTGTGTGA 15487 .......... .......... .......... .......... .......... .......... 243 TTGCCAGATA GTTCACTGGA GAAATCACCT AAGATTTCCT GAAGATACTA AACTCTCACA 15427 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATA GTTCACTGGA GAAATCACCT AAGATTTCCT GAAGATACTA AACTCTCACA 296 TGAGGCAAAG GATCTTATTT GCAGGTTACT ATGTGATGTT GAGCATAGAC TGGGAACTGG 15367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCAAAG GATCTTATTT GCAGGTTACT ATGTGATGTT GAGCATAGAC TGGGAACTGG 356 AGGTGCAAAC CAAATAAAGG TAATATTTGA AGCACTCATC CAATCACTTT CACTAGAACC 15307 |||||||||| ||||||||| AGGTGCAAAC CAAATAAAG. .......... .......... .......... .......... 375 TTCATGTTTC TTCTGTTAAT TTATTTGAAG TGGTTTATCA GGCTCATCCT TGGTTCAAGG 15247 ||||||||| |||||||||| .......... .......... .......... .......... .GCTCATCCT TGGTTCAAGG 394 ATATTGAATG GGATAGGCTG TATGAAATGG AAGCAGCCTT CAAACCAGAA GTTAATGGAG 15187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGAATG GGATAGGCTG TATGAAATGG AAGCAGCCTT CAAACCAGAA GTTAATGGAG 454 AGCTGGACAC CCAGAATTTC ATGAAGTATG ATGAGGTATT TCATGAAATT GAATGAGTCT 15127 |||||||||| |||||||||| |||||||||| ||||| AGCTGGACAC CCAGAATTTC ATGAAGTATG ATGAG..... .......... .......... 489 TGTATTTTAT TGGAGAAAGT TAATGACTTT TATAGCCAGT GACATACACC CTTTTGATAC 15067 .......... .......... .......... .......... .......... .......... 489 TTTTAAATAT CTAATGCACA GTCAATGTCC ATCTGTAACA CCTAGAATTT TCCTTATTTT 15007 .......... .......... .......... .......... .......... .......... 489 ATTTATACAT TACTGTCCCA CCATCTCTAT TTACTTACAA AATGGACTGC AACATGTGTC 14947 .......... .......... .......... .......... .......... .......... 489 TTCTTTTCAC TATCTGTTTA CAATATTGGT GAACTGTGAG GAATGCCTCA TCCGAAAGGT 14887 .......... .......... .......... .......... .......... .......... 489 TTAGTAGAGG GTAGATTTCT ATTATTTGTT TTTAGATCCA CAGCACACCT TCTTGCATGT 14827 .......... .......... .......... .......... .......... .......... 489 GGGACCATGT GAAGCGCGTG GACCTACTCA TCTAAGAGTT TTATACTGTT TGTATGTTTC 14767 .......... .......... .......... .......... .......... .......... 489 CCTTTAGAAG ATATAAGTCA GATAGTAGGC ATTCACACAA CCTTCCAAAA TAGCAGCCTC 14707 .......... .......... .......... .......... .......... .......... 489 TTAAAGCACT ATTCTTTCTC AAACAAATAA CAAAAATCCC ATGATGGTTA TTCTCGCATT 14647 .......... .......... .......... .......... .......... .......... 489 CAACAGCATG TGTTCCTCAA TTGTGCATTT GTTTTGGGTT GAATATATAT ATTGGTCTTG 14587 .......... .......... .......... .......... .......... .......... 489 GAAGTTGTCG ATGAGTTGCT TAAGTTCAAA CTCGATTGCT ATGAGCATGG AGTAAAGTTA 14527 .......... .......... .......... .......... .......... .......... 489 GGTTTGAGAT CGGAGAGGGG GTAATTGTGT GTGTGTTTTA GCTGACTATT TTTTAGGTTT 14467 .......... .......... .......... .......... .......... .......... 489 AGAAAAGAAA AAAATGTATG TGTATATGTA TGTGTGTGTG CGCGCACATA TTCTGCAGAA 14407 .......... .......... .......... .......... .......... .......... 489 ATGAAGGAGT TAGGAAAACA ATAAGAGAGA TTGATGCTGA AGAATTAGTC TTGATTCTAG 14347 .......... .......... .......... .......... .......... .......... 489 ATAAAGGTTC TCCAGAATTC TCCAATAAAT GTGTCAGAAA GAAAGGTCCT TTGCTACCAA 14287 .......... .......... .......... .......... .......... .......... 489 GAATAATTTC TTAGAGTCAA TCGCTCCTAC TTTCTTGTAA TTTTTTCATT TAACAAAAAA 14227 .......... .......... .......... .......... .......... .......... 489 AGGCACATTT ACGTTCTACA TATTATTCTT TACTCAAAAA CTAGTTGGTA CTCTCTCTCT 14167 .......... .......... .......... .......... .......... .......... 489 CTCTCTCTCT CTCTCTCTCT CTATATATAT ATATATATAT ATATATATAT ATATATATAT 14107 .......... .......... .......... .......... .......... .......... 489 ATACACGCCT CTTTTTTCTT TTAACTTTCT TTTGGCCATT TTTTCAATCA AAATTCATCT 14047 .......... .......... .......... .......... .......... .......... 489 GATTCCTCAG TTCTGTAGTT TGAACGTCAC AACTCATCAA CTACCTTGAG TACTGTCCAC 13987 .......... .......... .......... .......... .......... .......... 489 TCACCCCCAG TGTAAATGAA GAGCACAGTT CAGGAGGCAC ACTGTATTGA GTGTAACGAT 13927 .......... .......... .......... .......... .......... .......... 489 AACTGTCCTG AGCCTTTTAC TATTTTTAAG TGAAATAATG CTCTTCAAAA AACTGACATT 13867 .......... .......... .......... .......... .......... .......... 489 GCAAAAGCTT GCAATCATAT CTATTGTTCG ACTTGTATGC TTAGATAAGC AACCTATAAA 13807 .......... .......... .......... .......... .......... .......... 489 AAGGAAATGA AATGCTGTTT TTCCAGGCTT GCTTCTTTTT TTCTTGCGCC AAGCATGTAC 13747 .......... .......... .......... .......... .......... .......... 489 AAAGTTTTGT TGATGGGCAA CATTCAGACT CAACCTAGGA TGTATATTTG CTTTTGTACA 13687 .......... .......... .......... .......... .......... .......... 489 GTGTTGAAGT GTGTGAATCA CCTCGTTTTT CAAGTTAAAT TGTTAGAGGC TGTAATCTGT 13627 .......... .......... .......... .......... .......... .......... 489 GATATGTCCC CTAATGACCA TTTTCAAAAG AGTTTTCTCT CTTCCATTCT CTTTTCACAA 13567 .......... .......... .......... .......... .......... .......... 489 ATAAGTTAAG ACAAGAAACT GGTAGAGTTT CTTGCAATGC AATTTGTATC CTGCCTGTAA 13507 .......... .......... .......... .......... .......... .......... 489 TCTCAGTGTC TCACTTTCTA AAAGCAGTTG CTTTCTATTA CTCCATGAGT ATGGTGCTTT 13447 .......... .......... .......... .......... .......... .......... 489 TTTGACTAGC TAACTTTAAG TCAAGATCTA AATTTTATCT GTGCTGCTAC GCTTGTATTA 13387 .......... .......... .......... .......... .......... .......... 489 GGTAAGTCAA GCTTTCTCCT TAATCTCTGT TTCTTGTCAG ACTTAGTCAC AATATTGTGC 13327 .......... .......... .......... .......... .......... .......... 489 ATGGTCTTTA GTTCTGGCAT CTTTTATTGA CGATTCATGC CGAGGATTTT GCTTTGTGAT 13267 .......... .......... .......... .......... .......... .......... 489 TTCAAACTAG TAGTCCTCAC TTTTTCAATT TCCTATTGGC AAGAATATGC TTGATTCACA 13207 .......... .......... .......... .......... .......... .......... 489 TGTTAGCCTT CTGAAACTAT ACTTGGTGGA TCTATAGTTT GTCACCTTTA TCATCTAGTT 13147 .......... .......... .......... .......... .......... .......... 489 CAAATGTAGT CTGTTTCTCC TTGTAAGTAA CTGTTTTCTT TCCTTCTGGA CTTCTTCATA 13087 .......... .......... .......... .......... .......... .......... 489 GATGGATACT CCAACATCAG CAAGATCTGG TTC 13054 ||||||||| |||||||||| |||||||||| ||| .ATGGATACT CCAACATCAG CAAGATCTGG TTC 521 hqPGS_C08HBa0167P18.1-_SGN-E267033+ (20586 20509,20023 19944,16127 16043,15479 15348,15265 15152,13085 13054) ******************************************************************************** EST sequence 32 +strand 760 n (File: SGN-E538026+) 1 TGCCATGAAG AAGTTAAAGA AATCTGAAAT GCTCATCAGA GGACAGGTGG AGCATGTGAG 61 AGCTGAAAGA AATTTATTGG CAGAAGTGGC CAGCCATTGT ATTGTAAAAT TATACTACTC 121 ATTCCAAGAT GCTGAATATC TCTACCTTGT CATGGAGTAT CTTCCTGGCG GTGACATGAT 181 GACTCTGCTG ATGAGAGAAG ATACATTGTC TGAAAGTGTA GCTAAATTTT ATATTGGTCA 241 GAGTGTCCTA GCTATAGAGT CTATTCACAA GCATCATTAC ATTCACAGAG ATATCAAACC 301 TGACAACCTT CTTTTGGACA AAAATGGTCA CATGAAGCTC TCTGATTTTG GTCTCTGTAA 361 GCCTCTTGAT TGTAGAACGT TATCCACATT AAAAGAAAAT GAAGCTATGG ATGATGAGAA 421 TATAAAGGAT CCTATGGATA TAGATAGCAG CTTCCCAGAT ACCAATGATG GAAATAAGTG 481 GAAAACCCCC CGCGAAAAGC TTCATCATTG GCAGATAAAC AGAAGGAAAT TGGCCTTTTC 541 AACTGTCGGT ACACCAGACT ATATTGCTCC TGAGGTACTA TTGAAGAAAA GGATATGGAA 601 TGGAATGTGA TTGGTGGTCC CTTGGTGCAA TTATGTACGA AATGCTCATT GGTTACCCTC 661 CATTCTATGC CGATGATCCG ATAACTACTT GCAGAAAGAT AGTTCACTGG GAGAATCACC 721 TAAGATTTCC CTGAAGATAC TAAACTCTCA CATGAGGCAA Predicted gene structure (within gDNA segment 25326 to 14809): Exon 1 24726 24681 ( 46 n); cDNA 1 46 ( 46 n); score: 1.000 Intron 1 24680 21166 (3515 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21165 20924 ( 242 n); cDNA 47 288 ( 242 n); score: 1.000 Intron 2 20923 20753 ( 171 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 20752 20509 ( 244 n); cDNA 289 532 ( 244 n); score: 1.000 Intron 3 20508 20024 ( 485 n); Pd: 0.991 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 4 20023 19944 ( 80 n); cDNA 533 613 ( 81 n); score: 0.969 Intron 4 19943 16128 (3816 n); Pd: 0.000 (s: 0.95), Pa: 0.988 (s: 1.00) Exon 5 16127 16043 ( 85 n); cDNA 614 698 ( 85 n); score: 1.000 Intron 5 16042 15480 ( 563 n); Pd: 0.990 (s: 1.00), Pa: 0.845 (s: 0.89) Exon 6 15479 15419 ( 61 n); cDNA 699 760 ( 62 n); score: 0.910 MATCH C08HBa0167P18.1- SGN-E538026+ 0.989 758 0.997 C PGS_C08HBa0167P18.1-_SGN-E538026+ (24726 24681,21165 20924,20752 20509,20023 19944,16127 16043,15479 15419) Alignment (genomic DNA sequence = upper lines): TGCCATGAAG AAGTTAAAGA AATCTGAAAT GCTCATCAGA GGACAGGTGA GAAGAGCAAT 24667 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGCCATGAAG AAGTTAAAGA AATCTGAAAT GCTCATCAGA GGACAG.... .......... 46 TGCCTTCATT ATTTTTTTTC TATTTGGTTT TCATTATATG CCTACTTTTA TCAATGTTGC 24607 .......... .......... .......... .......... .......... .......... 46 TTCTACTCTC TGGTAGAGTA TGTAATTATG ATGCTAAGAT ACCTCAGATT TGGAAATTGG 24547 .......... .......... .......... .......... .......... .......... 46 CTGCTTGTAC ACATTGACAT ACTACTGGTT ATGGTGATAT ACTGCCAAGC TGTTTAGCCT 24487 .......... .......... .......... .......... .......... .......... 46 AATTCAGCCT ATATCCTGTT GCTCGCACTA TGATTTTGAC TGTGTAAATC AGAAGTTATG 24427 .......... .......... .......... .......... .......... .......... 46 GTGGAGAACT ATGTCTACAT GTATATGATT GACAATTGGG AAAGATAGAA ATGCTAGATG 24367 .......... .......... .......... .......... .......... .......... 46 TTTTGAAGAA TGTAACTGTA TTCTTTTGTT TGACTTTTGG TGTAAAGAAA ATGTTGTAGA 24307 .......... .......... .......... .......... .......... .......... 46 TGATTCAGAA TCCTTAGTTG ACATGTTAGA TTCTTAGTAA GATAATACAG GATACAATTG 24247 .......... .......... .......... .......... .......... .......... 46 TGGCCTTTTT AATTGTACAT ATGTCTGCAG CACTGCTTCT GTGCTGATTT AAAATACTGT 24187 .......... .......... .......... .......... .......... .......... 46 TACCATACTA AAAAAATTTC CTTAGGGTGG AGTATTTGAT ATCCAAAATC AGCGCAAGAT 24127 .......... .......... .......... .......... .......... .......... 46 TTACACAGTT CAACCTTTGC ATCTGAATCT CATTCACTTT TCAGACAGAT TAAAAGCTTT 24067 .......... .......... .......... .......... .......... .......... 46 TGCACCTGGG GGTATCCTGC AGAAATCTAC TAATTCAGTT ACTGTCCTGT TTCATCTTTA 24007 .......... .......... .......... .......... .......... .......... 46 AAGCACCACT TATGTCTTAT ATGCGGAGTT TATATTATGC TAAGAATTAA GATGTGCTAA 23947 .......... .......... .......... .......... .......... .......... 46 CAACAAATTT ATGAGCAGAC TTTAGTACTA CTACTAATAC TTCTTCGGAC AAACTCCCAT 23887 .......... .......... .......... .......... .......... .......... 46 CTAAGCTACA ATCTCTAGGA ATATTAGTAT GTGGATTTAA CTAAGAATAG ATTAAAGAAA 23827 .......... .......... .......... .......... .......... .......... 46 GAGAACAAGG ATCATATAGG CAATACTAAC TAGTTCAGAT TAAGAGGTTA TTGTTGTTAC 23767 .......... .......... .......... .......... .......... .......... 46 ACTTGCAGTA GGTCTTGAAA TGGTTAAGTA TGAGATTCAG AACTTCTAGT TTTGGGAAAA 23707 .......... .......... .......... .......... .......... .......... 46 TCTGTGTTTT TGACTAAAAA GACAAATTGG TTACTAATAT TGGAGGGATA TGAATGAGAA 23647 .......... .......... .......... .......... .......... .......... 46 CAGAGCGGAT TATATAATGG ATTACTGCCC AACCTCAACT AGTTTGGGAT TGATACATAG 23587 .......... .......... .......... .......... .......... .......... 46 TTATTGGAAC TCCCATGCAG TGTTCTCTTG AACCCTTTAA CATCCAATAC TTGTAAAACA 23527 .......... .......... .......... .......... .......... .......... 46 GTAAAAGCGA GTAAAGAGGA TTCCTAATAC CTCCTGGAGC GTCAGGTTTT CATACTCTTG 23467 .......... .......... .......... .......... .......... .......... 46 TCTGATTCAT GTTTCATCTC TGAACATGCA AAAAGACCAG TTTGAGCATC TCCAAAATGC 23407 .......... .......... .......... .......... .......... .......... 46 ATGTGCCAAC TAGTTTCTAT TTTGCATCGT GTGTGATCTC TTGGGCTCTT GTGTAACCAT 23347 .......... .......... .......... .......... .......... .......... 46 ACTTTCATGT ATTTCTGCAC TGATCGTTTG CCAGATATAA TGTCTGTCAT TATATAGTAG 23287 .......... .......... .......... .......... .......... .......... 46 TCAGTACATT TCATAGTGAC ATCATCCCAT CAACTCGGAC CAAGATTTTG AATTTAGGAA 23227 .......... .......... .......... .......... .......... .......... 46 AAAAGATAGG AATCTTCAGA ATTAGAATTT CCCTCATTGG TTTCTTTGTC ATTTAAAGAT 23167 .......... .......... .......... .......... .......... .......... 46 AAAGATTTTT CGGTCAATAA TAGTTGTTTT CTAATACCCT CTCTTCTTTA TATGAGAAAC 23107 .......... .......... .......... .......... .......... .......... 46 AAGGTTTGTT TATTTAGGTT TTATATTTAT TCACTTTCTC TATATAACCT GCGATGCTAG 23047 .......... .......... .......... .......... .......... .......... 46 ATGCTATCAC CGCATTTGTG CCAATTTTGG TGGTTAGTGG AATAAGATAG TTGAATAGTT 22987 .......... .......... .......... .......... .......... .......... 46 TAATTCATAT CTTTCTATGT CATATACATG GATTTATATA CATGAGAGGT TGTGGAACAG 22927 .......... .......... .......... .......... .......... .......... 46 AATCACCTAG ATCCCATGAA ATCTGGGATT CTATAAAATC ATATATTTTT CAAAAAAAAA 22867 .......... .......... .......... .......... .......... .......... 46 GGAGAAAAAG ATATTCTAAA TTACAACAAT TATCTTTAAG GTCTTAGAGG ATCAAGTTTT 22807 .......... .......... .......... .......... .......... .......... 46 GATATGGAGT ATATCCTCTA TCAGTCAACA CTCCCCTCTA GCGGGTGAAT GGATATCTTC 22747 .......... .......... .......... .......... .......... .......... 46 CATTCCTAGC TTGCGTATTG GATCTTGAAA CGCATTATTT GGTAGTCCTT TTGTTAAAAC 22687 .......... .......... .......... .......... .......... .......... 46 ATCGGCCACC TGTTCTTTTT TAGATACAAA TGATGTACAA ATGTGTCCCC TATCTAATTT 22627 .......... .......... .......... .......... .......... .......... 46 CTCCTTAATG AAATGTCTAT CTACCTCAGT ATGCTTTGTG CGATCATGTT GTACATGATT 22567 .......... .......... .......... .......... .......... .......... 46 ATGAGCTATA CTTATTGCTG ATTTATTGTC ACAATAGTCT CGTAGGTCCT TCCCATCTTA 22507 .......... .......... .......... .......... .......... .......... 46 TCTTCAAATA ATCAAGGATT ATCTTTAACC ATAACAACTC ATAAACTCCC ATAGCTATAG 22447 .......... .......... .......... .......... .......... .......... 46 ATCTAAATTG GGTTCTGCAG AATTTGTTTT TATTTCATAG GTCCTGGCAG CATCATGTAC 22387 .......... .......... .......... .......... .......... .......... 46 TTTAGAGTTG TCTCCTTCAC TGCATCCCAA ATTTCCTTAG GGGTGCTCAG GAACATAGTG 22327 .......... .......... .......... .......... .......... .......... 46 CTATCGCTGA TTTCTGGAAG CATAGAGTTC CATAACCAAG ACATCACCAT TGCATCATGT 22267 .......... .......... .......... .......... .......... .......... 46 TCATCCCATA CATCAAATGT GGTGTCTTCT TTAGATGGTC CTGTACCAAG AAGGTGTCGT 22207 .......... .......... .......... .......... .......... .......... 46 ATTTTCCCTT TACCCTTTAA AAAGGTATGA ACCGGTTGAG CCCATTTTAG GTAATTTTTT 22147 .......... .......... .......... .......... .......... .......... 46 TCCATTCAAC CGATAAGAGG CTTGAATGAT TTGCAAATCA CCCGATTAAA CTGTAGAGTT 22087 .......... .......... .......... .......... .......... .......... 46 ATTCGCTACA GTTGCAGAAA CATTTCCAGA GGCTGGAATA GTTGCGGCAA TCACATTTTC 22027 .......... .......... .......... .......... .......... .......... 46 TGGACAAGAT GAATAAAACC ATTAAAGAAT AAGCCTAAAA CTCTGATACC ATATGGAATA 21967 .......... .......... .......... .......... .......... .......... 46 AGGTAGTTGA ATAGTTTCAT TCATATCTTT CTATCTCATA TACATGGCTT TATATTCATG 21907 .......... .......... .......... .......... .......... .......... 46 AGAGATTTTG GAACAGAATG ACCTAGATCC CATGAAATCT GGAATTCTAT AAAATCATAT 21847 .......... .......... .......... .......... .......... .......... 46 ATTTTGCCAT AAAAAGGAGA AAAAGATATT CTAGATTACA ACAATTATCT TTAAGATCTT 21787 .......... .......... .......... .......... .......... .......... 46 AGAGGATCAA ATATTGATAT GAAAAATACC ATCTATCAGC CAACAATTAG GATTAGTGCT 21727 .......... .......... .......... .......... .......... .......... 46 CTTGGACTGG ATATGTTGTT GCATTAATTG AGGTGTTTGC TAGCATCCCA GACAACTGAT 21667 .......... .......... .......... .......... .......... .......... 46 ATGAAGTGTA GCACTAGAAT AGTTACAGAT CTCCTGTTCA AAATTTTTTC TTTTTAATCT 21607 .......... .......... .......... .......... .......... .......... 46 TATCGTATGA AAGTACTCTC TGGAAACTTT CATGACATGT TTTCTAGGGC TATATTTTAT 21547 .......... .......... .......... .......... .......... .......... 46 TTGTACGTTC AAAGGGGTCC CTGTGGTCCT TCTCCTCGTT TTACTGGACA GCTTTTCTTT 21487 .......... .......... .......... .......... .......... .......... 46 TGTAACTTAA TCTTCTTCTG GAGCCCCCTT CTCATGTAGG TTCAGCATTG ATTTCTTAAA 21427 .......... .......... .......... .......... .......... .......... 46 TTAAGAAAAC TTTATTGCCT TCGAGAAACA GAAATGATCC AAGTAATACA CCAAGGTTGA 21367 .......... .......... .......... .......... .......... .......... 46 TTGTTCCCCG CATGAAATGA AATGATTGAG TGTCATATTG AAGTAATTTT TCAGTGTCCG 21307 .......... .......... .......... .......... .......... .......... 46 CTGTATGAAT GATTGGAACT CATGAAGCTG CTCGTGCATT CTTTATTTAA TAGGAAGTTG 21247 .......... .......... .......... .......... .......... .......... 46 GGAGGGTGGG GTCTGTATCC TGTTTACATG GGGTATATCC GCCAACTTTG TAATCCCTAT 21187 .......... .......... .......... .......... .......... .......... 46 TGAAAAAATT GATTTTCGCA GGTGGAGCAT GTGAGAGCTG AAAGAAATTT ATTGGCAGAA 21127 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGGAGCAT GTGAGAGCTG AAAGAAATTT ATTGGCAGAA 85 GTGGCCAGCC ATTGTATTGT AAAATTATAC TACTCATTCC AAGATGCTGA ATATCTCTAC 21067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCCAGCC ATTGTATTGT AAAATTATAC TACTCATTCC AAGATGCTGA ATATCTCTAC 145 CTTGTCATGG AGTATCTTCC TGGCGGTGAC ATGATGACTC TGCTGATGAG AGAAGATACA 21007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTCATGG AGTATCTTCC TGGCGGTGAC ATGATGACTC TGCTGATGAG AGAAGATACA 205 TTGTCTGAAA GTGTAGCTAA ATTTTATATT GGTCAGAGTG TCCTAGCTAT AGAGTCTATT 20947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCTGAAA GTGTAGCTAA ATTTTATATT GGTCAGAGTG TCCTAGCTAT AGAGTCTATT 265 CACAAGCATC ATTACATTCA CAGGTATGTT TGCATCAACT TCTTATTTGT GAAAGCTACT 20887 |||||||||| |||||||||| ||| CACAAGCATC ATTACATTCA CAG....... .......... .......... .......... 288 GTTATGAAAT AATTAAGACT TAAGGTAATT TATGTGCATA ATTTGAATGT GAATATGTAA 20827 .......... .......... .......... .......... .......... .......... 288 TCACTTTCTT GAGGTATAGT TCTTGCCATG TTGTGACTGT TTTGGTGTTT ATATTTTGAT 20767 .......... .......... .......... .......... .......... .......... 288 TTCTTTTTTT ACAGAGATAT CAAACCTGAC AACCTTCTTT TGGACAAAAA TGGTCACATG 20707 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....AGATAT CAAACCTGAC AACCTTCTTT TGGACAAAAA TGGTCACATG 334 AAGCTCTCTG ATTTTGGTCT CTGTAAGCCT CTTGATTGTA GAACGTTATC CACATTAAAA 20647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCTCTG ATTTTGGTCT CTGTAAGCCT CTTGATTGTA GAACGTTATC CACATTAAAA 394 GAAAATGAAG CTATGGATGA TGAGAATATA AAGGATCCTA TGGATATAGA TAGCAGCTTC 20587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGAAG CTATGGATGA TGAGAATATA AAGGATCCTA TGGATATAGA TAGCAGCTTC 454 CCAGATACCA ATGATGGAAA TAAGTGGAAA ACCCCCCGCG AAAAGCTTCA TCATTGGCAG 20527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGATACCA ATGATGGAAA TAAGTGGAAA ACCCCCCGCG AAAAGCTTCA TCATTGGCAG 514 ATAAACAGAA GGAAATTGGT ATGCAATATT ACTGATATAT GTTGTTTCTT CTTTGCATTG 20467 |||||||||| |||||||| ATAAACAGAA GGAAATTG.. .......... .......... .......... .......... 532 TGTGAGGATT TACAGAATGT CATGGAAACA AAATTCACGT GTTGCAACAT GGAACCCAAC 20407 .......... .......... .......... .......... .......... .......... 532 AAGCCACTAC CTGCTAGGTG AACCAATAAT ACAACCCAAA GCATAGTATA AGAAACATCT 20347 .......... .......... .......... .......... .......... .......... 532 TTATAGGAAC CCCTAAATAA ATGAAAAGGA TATCTCAAAA CAGCAGAAAG CTAATATAAG 20287 .......... .......... .......... .......... .......... .......... 532 ATACAAAATC ACGTGTTATA GTTGAATGAA TTTATCTTGT TCCAAACACT TGCGCTTATG 20227 .......... .......... .......... .......... .......... .......... 532 TAATACCAGA TTATTGCAGG AATGACAAAT TGTATTGGCT TTTATTTCAG TCAATGAAGA 20167 .......... .......... .......... .......... .......... .......... 532 ATGCTTTTTT GCAATATGTC AATAACTCTG ATATAAAATC TTAATATTCA CTTTTGTAGA 20107 .......... .......... .......... .......... .......... .......... 532 CACTAAATTT AGATCTGTGT TATTTAGCAA GTATTGAATT TTCTATGTAT TTAAAGCTAA 20047 .......... .......... .......... .......... .......... .......... 532 TTTTTGTCTT CTTCATCTAA AAGGCCTTTT CAACTGTCGG TACACCAGAC TATATTGCTC 19987 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCCTTTT CAACTGTCGG TACACCAGAC TATATTGCTC 569 CTGAGGTACT ATTGAAG-AA AGGATATGGA ATGGAATGTG ATTGGTTAGT GTTCATTCCG 19928 |||||||||| ||||||| || |||||||||| |||||||||| |||| CTGAGGTACT ATTGAAGAAA AGGATATGGA ATGGAATGTG ATTG...... .......... 613 AAAGTAGAAT TAGCTTTTTT GCATAGATCA CCAGGAGTTC TGGGATTCTC TGCTCATGCA 19868 .......... .......... .......... .......... .......... .......... 613 TGAATCAATG TGACAAATGT CTAAATGTCA ATAGCGATAC CTTCTTCAAG TTGGTAAATA 19808 .......... .......... .......... .......... .......... .......... 613 AATTTGTTGA ACTAATTGAT GGATTTCCCT CCCAATATTT ACCTTGGATA CTTCTCTTTT 19748 .......... .......... .......... .......... .......... .......... 613 GATTAGTTCG ATTGCTAACA TATGTGGTGG TACCTTTTAC TGATAATGAT AATTAAAAAA 19688 .......... .......... .......... .......... .......... .......... 613 CTGTATTCTC TGTGTTTTAT TTTAGGGAGA ACTCATCAGT GGCCACCTAA ACTTGGCATG 19628 .......... .......... .......... .......... .......... .......... 613 AATTTTCACT TAGACACTTC AACAAGTTTT TGTTCATTTT AGACACTTCA TGGCATGCAC 19568 .......... .......... .......... .......... .......... .......... 613 AACTATGTCA TTTTGACACT TTTTCGACAA TCTGCCAAAT TTGTTAGGTG TGTGTAACAC 19508 .......... .......... .......... .......... .......... .......... 613 ATTCACTAAT GACATGTCAA AATGACGAAT TAAATAAAGA CATGTGGCAT AAAATTAATT 19448 .......... .......... .......... .......... .......... .......... 613 ATTAAACGAT GAATTTTGAG TAGGAAAAAA ACTACCAATG ACTCATTGAC ATGTCTTTAA 19388 .......... .......... .......... .......... .......... .......... 613 CCAAATAATT AATGCAAGTC AAAAATTGTT GTTTTAGTAC ATAAATATGG AGTCCCATTT 19328 .......... .......... .......... .......... .......... .......... 613 TTTCTACTAA AAATTATATA GCTTATCTAT TTAATTTGAA CTTTTCCTTG ATTATGATGT 19268 .......... .......... .......... .......... .......... .......... 613 AAGAAGACAT ACAAATGGAT TGGAACTAAA ATTGTTTATG GTTAAGGTAG GATTTAATAA 19208 .......... .......... .......... .......... .......... .......... 613 TTGAAAATAT GATTTCCTTC CATTTCTGAG TGTTTTTTTT TTCTTCTTGA GATTTGTGTT 19148 .......... .......... .......... .......... .......... .......... 613 GGTTTTTCTC AAATTATTTT GAGGAGGAAG AAGGACAACA AAATAAGTTA AAGTATTTAA 19088 .......... .......... .......... .......... .......... .......... 613 GCTTAAATTT GTTTTTTTTT AAACTGTTAA CTTTAGTCTA TATATCCACA GGTTTACTAC 19028 .......... .......... .......... .......... .......... .......... 613 AACAAAAAGT TCCCCTTTAA AAGTTTTACA ACTTACAGAA TAAAATAGTC TTAGTCTAAA 18968 .......... .......... .......... .......... .......... .......... 613 CTGCTACCTG TAAATAGCAC ATCAAAGATA TCTTCTGTCC TAGTTAATAT ATCTTGTTCA 18908 .......... .......... .......... .......... .......... .......... 613 CACCAACAAT AGAAAAGAGC TAAGCAGTCC ATCTTGATCT TCTGTAAACT ATTCTGCCAA 18848 .......... .......... .......... .......... .......... .......... 613 TTTTCAAAAC TCCTGCTGTT TCTCTCTTTC CAGATTGTCC ACCAAATACA TGCCGGGATA 18788 .......... .......... .......... .......... .......... .......... 613 AGTTTCCATC TCTTCTCCTA GTCAGAAGCA TTGCCATCTC TATTCCAGCT GCTCAGGATT 18728 .......... .......... .......... .......... .......... .......... 613 CCTTTAGTGC TTCCTGGTTT CACCCATCTT ATCCCCTTTA GACAGATGAA CATTCTCCAT 18668 .......... .......... .......... .......... .......... .......... 613 AATTGTTTTG TCCATGTACA ATGCAAAAAA AGATGGTTAA TTGTCTCAGC ATGTTCTCCA 18608 .......... .......... .......... .......... .......... .......... 613 CATAAAGTAC ATCTCGAAGC CAACTGATAG CCTCTTTTCT TTAGATTTTA ATGAGTCAAA 18548 .......... .......... .......... .......... .......... .......... 613 ACTGCTTCTT TTGTTGATAG CCCACATGAA GCAGTTTACT CTGTAGGGTA CTTTTGGTTT 18488 .......... .......... .......... .......... .......... .......... 613 CCAGGTGATC TTCCATGGCC ATTCCATCTC CTGTCCAGCA TTCTTGTTGA GTTCCTTATA 18428 .......... .......... .......... .......... .......... .......... 613 CACTGAATTT ACTGAGAATT GACCTTTGGT ATCATTCTGC CAAACTAATA AGTCCTTCTT 18368 .......... .......... .......... .......... .......... .......... 613 TTTCAGTGAG GTTGCTGAAA GAGCCTACTG AATCTGCCAC TTTGTCAATC TCTCTATCCT 18308 .......... .......... .......... .......... .......... .......... 613 GTAGGTTCCT CCTTGAGAAC AAATTCCATC CTTGTCCAGT CCACATTGTA GCCACAGTGG 18248 .......... .......... .......... .......... .......... .......... 613 CCTGTTAATG TTGGCATAAA GTGAACAATT CAGGATGCAA CTGTTTCATA GGGACAGGAC 18188 .......... .......... .......... .......... .......... .......... 613 CCATTCCACT TATCCTCCCA GAAGGATGTC TTTGACCCAT CTCCCACTTC TACCTTGGTT 18128 .......... .......... .......... .......... .......... .......... 613 CTGTGATATA GCACTGGCCA TAGATTTCTG ATTCCCCTCC ATACGGTGCA TTTTATGGAG 18068 .......... .......... .......... .......... .......... .......... 613 TACTTATCAT TTTAGTCATC CGCTTATCTT CCATGCCATA TTTTGCTATG ATGACCTCTT 18008 .......... .......... .......... .......... .......... .......... 613 ACCAGAGCAT GTTATCTTCA TTTGCCAACT TCCACAACCA CTTCATCATT AGGCTCTGGT 17948 .......... .......... .......... .......... .......... .......... 613 TTTGTTTCCT CAGATTTCTT ATACCTAGGC CTCCTGTGTT TTTACTCACC ATCAGTTCTT 17888 .......... .......... .......... .......... .......... .......... 613 TCCATTTAAC AAGATGAAAC TTCTTCTTAT CTTCACTGCC TTGCCATAAG AAATTTCTTC 17828 .......... .......... .......... .......... .......... .......... 613 TAAGAGCATC AATGCTATTA GATACACTGG CAGGCATAGG GAAGACTGAC ATCATATAAG 17768 .......... .......... .......... .......... .......... .......... 613 AGGGTAATGC ATCCATCACA CTGTTAATTA AAGTCAATCT TCCTCCCAAG GACAAGTACA 17708 .......... .......... .......... .......... .......... .......... 613 AACTCTTCTA GCTAGTGAGT CTCTTTTCAC ATTTCTCCAG TACCCCATTC CATATGCCTT 17648 .......... .......... .......... .......... .......... .......... 613 TGGACTTGCT TTTTTAGCTC CCAAAGGCAT ACCTAGGTAA GCAGTTGGAA GCTCCTCAAC 17588 .......... .......... .......... .......... .......... .......... 613 CTTGCCTCCT AGTGTTCTGG TCAAACCTTC TGTATTAAGC ACACTATTGA TAGGATAGTG 17528 .......... .......... .......... .......... .......... .......... 613 AAGCTTTTCC CCCAATAAGC TTAAAATTTA TGGGCACTAG AATTCACTTT TTGTTTGTGG 17468 .......... .......... .......... .......... .......... .......... 613 CATTGTCAAA TTTATTTCAC CATGGAAAGA GTTTAAGCTT TGAAAATGGT AGCCAAAAAA 17408 .......... .......... .......... .......... .......... .......... 613 TGGGGAAGAA GAAGAAGAAA AAAAAGTTAA ATTTGATAAA ATGAGGCTCT CACGCGCGTC 17348 .......... .......... .......... .......... .......... .......... 613 CAGTGAGTAT ATCACACTTG CTATGCCATC TCAGCAGAAA GTCTCGAATT AACACAGCGG 17288 .......... .......... .......... .......... .......... .......... 613 GACATAAAAT GAATGGAGCT TAGTTAAGGT GTCTAAGTGA AAATTAGTGC CAACTTTAGG 17228 .......... .......... .......... .......... .......... .......... 613 TGGCCACCGA TGGGTTTGGC CTTTATTTTA TAAGATATTC TATTCTTTTT GGTGAAGATA 17168 .......... .......... .......... .......... .......... .......... 613 TACTTTCTTT TCAGTCTGCT CAGAAAAGTT CGACATATTT CTATATTTGG AAATTCTTTA 17108 .......... .......... .......... .......... .......... .......... 613 GTTTGAACAT TCTGATTTTA TCCTAATTGA CAATGTCATG TTTAAGGCAA TTAGATATTA 17048 .......... .......... .......... .......... .......... .......... 613 AGGGTACTTT TGGTGCGTCA TATTCTGCCT GATGTAAAAC CTTTCTTTTC TTAAACTCCT 16988 .......... .......... .......... .......... .......... .......... 613 TATCCATAAT AAAATGAAGT AGAGGAGTCA AAATTTGTGG CACCTCTATG TTCATCTTAA 16928 .......... .......... .......... .......... .......... .......... 613 GTAAATTCAA TCTAGCAATA CCTATTAGTG GCAAACAAAA AACAAAAAAG AACCCTACTA 16868 .......... .......... .......... .......... .......... .......... 613 GACAAGGAAT GGAATGGTCA AGTAACCACT AATAACAGAA AAGAAAGCAA AGTTAGATAC 16808 .......... .......... .......... .......... .......... .......... 613 AAATGGAGGT TGAGAAAGCA GACTAAGGTT ATCTGGTGTT TTTAGTTGGG CTGCCTGCTG 16748 .......... .......... .......... .......... .......... .......... 613 CCTGCTTGTG TTGGGAAGGC AAAGGAGAAG TAGGGAGGAG TGAGGACATC AGTGTTAGCA 16688 .......... .......... .......... .......... .......... .......... 613 TGGGAGGATA CTGCATGAGG TAGTGGGATG GGGGACAAAG AAAGATTTTG GAGCAGTTGG 16628 .......... .......... .......... .......... .......... .......... 613 AAGAGGGGGC TAGAGAAGAA TTTCTCCCTG GGGCGACAAA ACATGTTAAT TTGAAGGTGA 16568 .......... .......... .......... .......... .......... .......... 613 ATGGAGTAAG AGTTTCTTGA CTTTAGTCCA TGGAAAGGTT AGGAAGAAAG AAGTAGGATA 16508 .......... .......... .......... .......... .......... .......... 613 TATCTGTGAG GGGTTCCACC TGCCTCCGTT TATGACCAAG TGGAGAGCTG TAAATTAAGT 16448 .......... .......... .......... .......... .......... .......... 613 GCTTAACCTC CCCCCCCCCC CCCCCTTCAA GCCTTCACCA TTCTGGGGAT ATGATATATC 16388 .......... .......... .......... .......... .......... .......... 613 TGATGCTACA AGATCTAGTG CCTCATCTGC ACAACAATCT CTAGTGGATG AGGCAAATTG 16328 .......... .......... .......... .......... .......... .......... 613 TATTTTGGGA TTTCGTGGAA CTTCACTGGA AGCTTGACCA TATCCACAGA CCTATGTTTT 16268 .......... .......... .......... .......... .......... .......... 613 CACTTTAGTT TGATGAGGAC TGCAGGAAAA TGCTTTTGTT TTCTAACCCG TTGTATAATT 16208 .......... .......... .......... .......... .......... .......... 613 TCTAGTTATT TGCTAAAGTA CAATGAACCA TGTTGTGCTT TATGTATTTC TCATCTTTTT 16148 .......... .......... .......... .......... .......... .......... 613 CTACTATACA CTACATGCAG GTGGTCCCTT GGTGCAATTA TGTACGAAAT GCTCATTGGT 16088 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTGGTCCCTT GGTGCAATTA TGTACGAAAT GCTCATTGGT 653 TACCCTCCAT TCTATGCCGA TGATCCGATA ACTACTTGCA GAAAGGTAGC ATCTTTACTT 16028 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TACCCTCCAT TCTATGCCGA TGATCCGATA ACTACTTGCA GAAAG..... .......... 698 TCTGTGTTCT TAAAATATGC TGTATGCTTT CCGTTTTTTT TATGATAAGG ATATCTACTG 15968 .......... .......... .......... .......... .......... .......... 698 CTTCTGAGAT AACAGAAAGT GCCTTCTTCT TTCACTGTAA AAATCAAGAG AATGGTAGAA 15908 .......... .......... .......... .......... .......... .......... 698 AAGTTTGATG CTAAGAATTT GTTGCAAAAT GACCACATAC AAAGAACAAG AATGCTTTGT 15848 .......... .......... .......... .......... .......... .......... 698 ATGCAATCTC ATCCGAGTAT GAACCACCTC TCTTTGCTGA TGCCGGAGAA CTGATAGCTT 15788 .......... .......... .......... .......... .......... .......... 698 GGACAGCTGA TGTCTGGACC TTTTCACGTG ATGCTTAACC CCTTAGATTA GTCTCTTTCG 15728 .......... .......... .......... .......... .......... .......... 698 TTTGGTTAAT CCGGGTCTAA GTCTTCTACC TTTTGCACTA CAAGTCTAAG ATGTATTGCA 15668 .......... .......... .......... .......... .......... .......... 698 TTCATAGTGA TACGCTTGCC AGTGCTACAA TCAATGTTTA CTATGTGAAC GTGGTGTATT 15608 .......... .......... .......... .......... .......... .......... 698 AGTGACTATC TCTGTATTAT ACCAACTAAA ACGTACTGAT TGCCTTCGTG TTGAAGTAAA 15548 .......... .......... .......... .......... .......... .......... 698 CCTTCTTTTC TGGTTCTCCT GCTACTTCCA AATTTATCCG ATTCTAACTC CATGTGTGTG 15488 .......... .......... .......... .......... .......... .......... 698 ATTGCCAGAT AGTTCACTGG AGAAATCACC TAAGATTT-C CTGAAGATAC TAAACTCTCA 15429 || |||||||||| ||||||| |||||||| | |||||||||| |||||||||| ........AT AGTTCACTGG GAGAATCACC TAAGATTTCC CTGAAGATAC TAAACTCTCA 750 CATGAGGCAA 15419 |||||||||| CATGAGGCAA 760 hqPGS_C08HBa0167P18.1-_SGN-E538026+ (24726 24681,21165 20924,20752 20509,20023 19944,16127 16043,15479 15419) ******************************************************************************** EST sequence 38 +strand 489 n (File: SGN-E267709+) 1 GCCATGAAGA AGTTAAAGAA ATCTGAAATG CTCATCAGAG GACAGGCGGA GCATGTGAGA 61 GCTGAAAGAA ATTTATTGGC AGAAGTGGCC AGGCATTGTA TTGTAAAATT ATACTACTCA 121 TTCCAAGATG CTGAATATCT CTACCGTGTC ATGGAGTATC TTCCTGGCGG TGACATGATG 181 ACTCTGCTGA TGAGAGAAGA TACATTGTCT GAGAGTGTAG CTAAATTGTA TATTGGTCAC 241 AGTGTACTAG CTGTAGAGTC TATTCACAAG CATCATTACA TTGACAGAGA TATCAAACCT 301 GACAACCTTA TTTTGGACAA AAATGGTCAC ATGAAGCTCT CTGATTTTGG TCTCTGTAAG 361 CCTCTTGATT GTAGAACGTT ATCCACATTA AAAGAAAGTG AAGCTATGGG TGATGAGAAT 421 ATCAAGGATC CTATGGATAT AGATAGCAGC TTGCCAGATA CCAGTGATGG AAATAAGTGG 481 AAAACCCCC Predicted gene structure (within gDNA segment 25325 to 19941): Exon 1 24725 24681 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 24680 21166 (3515 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0.96) Exon 2 21165 20924 ( 242 n); cDNA 46 287 ( 242 n); score: 0.963 Intron 2 20923 20753 ( 171 n); Pd: 0.999 (s: 0.92), Pa: 1.000 (s: 0.98) Exon 3 20752 20551 ( 202 n); cDNA 288 489 ( 202 n); score: 0.970 MATCH C08HBa0167P18.1- SGN-E267709+ 0.966 489 1.000 C PGS_C08HBa0167P18.1-_SGN-E267709+ (24725 24681,21165 20924,20752 20551) Alignment (genomic DNA sequence = upper lines): GCCATGAAGA AGTTAAAGAA ATCTGAAATG CTCATCAGAG GACAGGTGAG AAGAGCAATT 24666 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCCATGAAGA AGTTAAAGAA ATCTGAAATG CTCATCAGAG GACAG..... .......... 45 GCCTTCATTA TTTTTTTTCT ATTTGGTTTT CATTATATGC CTACTTTTAT CAATGTTGCT 24606 .......... .......... .......... .......... .......... .......... 45 TCTACTCTCT GGTAGAGTAT GTAATTATGA TGCTAAGATA CCTCAGATTT GGAAATTGGC 24546 .......... .......... .......... .......... .......... .......... 45 TGCTTGTACA CATTGACATA CTACTGGTTA TGGTGATATA CTGCCAAGCT GTTTAGCCTA 24486 .......... .......... .......... .......... .......... .......... 45 ATTCAGCCTA TATCCTGTTG CTCGCACTAT GATTTTGACT GTGTAAATCA GAAGTTATGG 24426 .......... .......... .......... .......... .......... .......... 45 TGGAGAACTA TGTCTACATG TATATGATTG ACAATTGGGA AAGATAGAAA TGCTAGATGT 24366 .......... .......... .......... .......... .......... .......... 45 TTTGAAGAAT GTAACTGTAT TCTTTTGTTT GACTTTTGGT GTAAAGAAAA TGTTGTAGAT 24306 .......... .......... .......... .......... .......... .......... 45 GATTCAGAAT CCTTAGTTGA CATGTTAGAT TCTTAGTAAG ATAATACAGG ATACAATTGT 24246 .......... .......... .......... .......... .......... .......... 45 GGCCTTTTTA ATTGTACATA TGTCTGCAGC ACTGCTTCTG TGCTGATTTA AAATACTGTT 24186 .......... .......... .......... .......... .......... .......... 45 ACCATACTAA AAAAATTTCC TTAGGGTGGA GTATTTGATA TCCAAAATCA GCGCAAGATT 24126 .......... .......... .......... .......... .......... .......... 45 TACACAGTTC AACCTTTGCA TCTGAATCTC ATTCACTTTT CAGACAGATT AAAAGCTTTT 24066 .......... .......... .......... .......... .......... .......... 45 GCACCTGGGG GTATCCTGCA GAAATCTACT AATTCAGTTA CTGTCCTGTT TCATCTTTAA 24006 .......... .......... .......... .......... .......... .......... 45 AGCACCACTT ATGTCTTATA TGCGGAGTTT ATATTATGCT AAGAATTAAG ATGTGCTAAC 23946 .......... .......... .......... .......... .......... .......... 45 AACAAATTTA TGAGCAGACT TTAGTACTAC TACTAATACT TCTTCGGACA AACTCCCATC 23886 .......... .......... .......... .......... .......... .......... 45 TAAGCTACAA TCTCTAGGAA TATTAGTATG TGGATTTAAC TAAGAATAGA TTAAAGAAAG 23826 .......... .......... .......... .......... .......... .......... 45 AGAACAAGGA TCATATAGGC AATACTAACT AGTTCAGATT AAGAGGTTAT TGTTGTTACA 23766 .......... .......... .......... .......... .......... .......... 45 CTTGCAGTAG GTCTTGAAAT GGTTAAGTAT GAGATTCAGA ACTTCTAGTT TTGGGAAAAT 23706 .......... .......... .......... .......... .......... .......... 45 CTGTGTTTTT GACTAAAAAG ACAAATTGGT TACTAATATT GGAGGGATAT GAATGAGAAC 23646 .......... .......... .......... .......... .......... .......... 45 AGAGCGGATT ATATAATGGA TTACTGCCCA ACCTCAACTA GTTTGGGATT GATACATAGT 23586 .......... .......... .......... .......... .......... .......... 45 TATTGGAACT CCCATGCAGT GTTCTCTTGA ACCCTTTAAC ATCCAATACT TGTAAAACAG 23526 .......... .......... .......... .......... .......... .......... 45 TAAAAGCGAG TAAAGAGGAT TCCTAATACC TCCTGGAGCG TCAGGTTTTC ATACTCTTGT 23466 .......... .......... .......... .......... .......... .......... 45 CTGATTCATG TTTCATCTCT GAACATGCAA AAAGACCAGT TTGAGCATCT CCAAAATGCA 23406 .......... .......... .......... .......... .......... .......... 45 TGTGCCAACT AGTTTCTATT TTGCATCGTG TGTGATCTCT TGGGCTCTTG TGTAACCATA 23346 .......... .......... .......... .......... .......... .......... 45 CTTTCATGTA TTTCTGCACT GATCGTTTGC CAGATATAAT GTCTGTCATT ATATAGTAGT 23286 .......... .......... .......... .......... .......... .......... 45 CAGTACATTT CATAGTGACA TCATCCCATC AACTCGGACC AAGATTTTGA ATTTAGGAAA 23226 .......... .......... .......... .......... .......... .......... 45 AAAGATAGGA ATCTTCAGAA TTAGAATTTC CCTCATTGGT TTCTTTGTCA TTTAAAGATA 23166 .......... .......... .......... .......... .......... .......... 45 AAGATTTTTC GGTCAATAAT AGTTGTTTTC TAATACCCTC TCTTCTTTAT ATGAGAAACA 23106 .......... .......... .......... .......... .......... .......... 45 AGGTTTGTTT ATTTAGGTTT TATATTTATT CACTTTCTCT ATATAACCTG CGATGCTAGA 23046 .......... .......... .......... .......... .......... .......... 45 TGCTATCACC GCATTTGTGC CAATTTTGGT GGTTAGTGGA ATAAGATAGT TGAATAGTTT 22986 .......... .......... .......... .......... .......... .......... 45 AATTCATATC TTTCTATGTC ATATACATGG ATTTATATAC ATGAGAGGTT GTGGAACAGA 22926 .......... .......... .......... .......... .......... .......... 45 ATCACCTAGA TCCCATGAAA TCTGGGATTC TATAAAATCA TATATTTTTC AAAAAAAAAG 22866 .......... .......... .......... .......... .......... .......... 45 GAGAAAAAGA TATTCTAAAT TACAACAATT ATCTTTAAGG TCTTAGAGGA TCAAGTTTTG 22806 .......... .......... .......... .......... .......... .......... 45 ATATGGAGTA TATCCTCTAT CAGTCAACAC TCCCCTCTAG CGGGTGAATG GATATCTTCC 22746 .......... .......... .......... .......... .......... .......... 45 ATTCCTAGCT TGCGTATTGG ATCTTGAAAC GCATTATTTG GTAGTCCTTT TGTTAAAACA 22686 .......... .......... .......... .......... .......... .......... 45 TCGGCCACCT GTTCTTTTTT AGATACAAAT GATGTACAAA TGTGTCCCCT ATCTAATTTC 22626 .......... .......... .......... .......... .......... .......... 45 TCCTTAATGA AATGTCTATC TACCTCAGTA TGCTTTGTGC GATCATGTTG TACATGATTA 22566 .......... .......... .......... .......... .......... .......... 45 TGAGCTATAC TTATTGCTGA TTTATTGTCA CAATAGTCTC GTAGGTCCTT CCCATCTTAT 22506 .......... .......... .......... .......... .......... .......... 45 CTTCAAATAA TCAAGGATTA TCTTTAACCA TAACAACTCA TAAACTCCCA TAGCTATAGA 22446 .......... .......... .......... .......... .......... .......... 45 TCTAAATTGG GTTCTGCAGA ATTTGTTTTT ATTTCATAGG TCCTGGCAGC ATCATGTACT 22386 .......... .......... .......... .......... .......... .......... 45 TTAGAGTTGT CTCCTTCACT GCATCCCAAA TTTCCTTAGG GGTGCTCAGG AACATAGTGC 22326 .......... .......... .......... .......... .......... .......... 45 TATCGCTGAT TTCTGGAAGC ATAGAGTTCC ATAACCAAGA CATCACCATT GCATCATGTT 22266 .......... .......... .......... .......... .......... .......... 45 CATCCCATAC ATCAAATGTG GTGTCTTCTT TAGATGGTCC TGTACCAAGA AGGTGTCGTA 22206 .......... .......... .......... .......... .......... .......... 45 TTTTCCCTTT ACCCTTTAAA AAGGTATGAA CCGGTTGAGC CCATTTTAGG TAATTTTTTT 22146 .......... .......... .......... .......... .......... .......... 45 CCATTCAACC GATAAGAGGC TTGAATGATT TGCAAATCAC CCGATTAAAC TGTAGAGTTA 22086 .......... .......... .......... .......... .......... .......... 45 TTCGCTACAG TTGCAGAAAC ATTTCCAGAG GCTGGAATAG TTGCGGCAAT CACATTTTCT 22026 .......... .......... .......... .......... .......... .......... 45 GGACAAGATG AATAAAACCA TTAAAGAATA AGCCTAAAAC TCTGATACCA TATGGAATAA 21966 .......... .......... .......... .......... .......... .......... 45 GGTAGTTGAA TAGTTTCATT CATATCTTTC TATCTCATAT ACATGGCTTT ATATTCATGA 21906 .......... .......... .......... .......... .......... .......... 45 GAGATTTTGG AACAGAATGA CCTAGATCCC ATGAAATCTG GAATTCTATA AAATCATATA 21846 .......... .......... .......... .......... .......... .......... 45 TTTTGCCATA AAAAGGAGAA AAAGATATTC TAGATTACAA CAATTATCTT TAAGATCTTA 21786 .......... .......... .......... .......... .......... .......... 45 GAGGATCAAA TATTGATATG AAAAATACCA TCTATCAGCC AACAATTAGG ATTAGTGCTC 21726 .......... .......... .......... .......... .......... .......... 45 TTGGACTGGA TATGTTGTTG CATTAATTGA GGTGTTTGCT AGCATCCCAG ACAACTGATA 21666 .......... .......... .......... .......... .......... .......... 45 TGAAGTGTAG CACTAGAATA GTTACAGATC TCCTGTTCAA AATTTTTTCT TTTTAATCTT 21606 .......... .......... .......... .......... .......... .......... 45 ATCGTATGAA AGTACTCTCT GGAAACTTTC ATGACATGTT TTCTAGGGCT ATATTTTATT 21546 .......... .......... .......... .......... .......... .......... 45 TGTACGTTCA AAGGGGTCCC TGTGGTCCTT CTCCTCGTTT TACTGGACAG CTTTTCTTTT 21486 .......... .......... .......... .......... .......... .......... 45 GTAACTTAAT CTTCTTCTGG AGCCCCCTTC TCATGTAGGT TCAGCATTGA TTTCTTAAAT 21426 .......... .......... .......... .......... .......... .......... 45 TAAGAAAACT TTATTGCCTT CGAGAAACAG AAATGATCCA AGTAATACAC CAAGGTTGAT 21366 .......... .......... .......... .......... .......... .......... 45 TGTTCCCCGC ATGAAATGAA ATGATTGAGT GTCATATTGA AGTAATTTTT CAGTGTCCGC 21306 .......... .......... .......... .......... .......... .......... 45 TGTATGAATG ATTGGAACTC ATGAAGCTGC TCGTGCATTC TTTATTTAAT AGGAAGTTGG 21246 .......... .......... .......... .......... .......... .......... 45 GAGGGTGGGG TCTGTATCCT GTTTACATGG GGTATATCCG CCAACTTTGT AATCCCTATT 21186 .......... .......... .......... .......... .......... .......... 45 GAAAAAATTG ATTTTCGCAG GTGGAGCATG TGAGAGCTGA AAGAAATTTA TTGGCAGAAG 21126 | |||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCGGAGCATG TGAGAGCTGA AAGAAATTTA TTGGCAGAAG 85 TGGCCAGCCA TTGTATTGTA AAATTATACT ACTCATTCCA AGATGCTGAA TATCTCTACC 21066 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCAGGCA TTGTATTGTA AAATTATACT ACTCATTCCA AGATGCTGAA TATCTCTACC 145 TTGTCATGGA GTATCTTCCT GGCGGTGACA TGATGACTCT GCTGATGAGA GAAGATACAT 21006 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCATGGA GTATCTTCCT GGCGGTGACA TGATGACTCT GCTGATGAGA GAAGATACAT 205 TGTCTGAAAG TGTAGCTAAA TTTTATATTG GTCAGAGTGT CCTAGCTATA GAGTCTATTC 20946 ||||||| || |||||||||| || ||||||| |||| ||||| |||||| || |||||||||| TGTCTGAGAG TGTAGCTAAA TTGTATATTG GTCACAGTGT ACTAGCTGTA GAGTCTATTC 265 ACAAGCATCA TTACATTCAC AGGTATGTTT GCATCAACTT CTTATTTGTG AAAGCTACTG 20886 |||||||||| ||||||| || || ACAAGCATCA TTACATTGAC AG........ .......... .......... .......... 287 TTATGAAATA ATTAAGACTT AAGGTAATTT ATGTGCATAA TTTGAATGTG AATATGTAAT 20826 .......... .......... .......... .......... .......... .......... 287 CACTTTCTTG AGGTATAGTT CTTGCCATGT TGTGACTGTT TTGGTGTTTA TATTTTGATT 20766 .......... .......... .......... .......... .......... .......... 287 TCTTTTTTTA CAGAGATATC AAACCTGACA ACCTTCTTTT GGACAAAAAT GGTCACATGA 20706 ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| .......... ...AGATATC AAACCTGACA ACCTTATTTT GGACAAAAAT GGTCACATGA 334 AGCTCTCTGA TTTTGGTCTC TGTAAGCCTC TTGATTGTAG AACGTTATCC ACATTAAAAG 20646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCTCTGA TTTTGGTCTC TGTAAGCCTC TTGATTGTAG AACGTTATCC ACATTAAAAG 394 AAAATGAAGC TATGGATGAT GAGAATATAA AGGATCCTAT GGATATAGAT AGCAGCTTCC 20586 ||| |||||| ||||| |||| |||||||| | |||||||||| |||||||||| |||||||| | AAAGTGAAGC TATGGGTGAT GAGAATATCA AGGATCCTAT GGATATAGAT AGCAGCTTGC 454 CAGATACCAA TGATGGAAAT AAGTGGAAAA CCCCC 20551 ||||||||| |||||||||| |||||||||| ||||| CAGATACCAG TGATGGAAAT AAGTGGAAAA CCCCC 489 hqPGS_C08HBa0167P18.1-_SGN-E267709+ (24725 24681,21165 20924,20752 20551) ******************************************************************************** EST sequence 8 +strand 580 n (File: SGN-E204223+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAAAA 541 TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA Predicted gene structure (within gDNA segment 21035 to 27480): Exon 1 22028 22032 ( 5 n); cDNA 226 230 ( 5 n); score: 1.000 Intron 1 22033 22821 ( 789 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 22822 22852 ( 31 n); cDNA 231 261 ( 31 n); score: 0.613 Intron 2 22853 23327 ( 475 n); Pd: 0.900 (s: 0), Pa: 0.879 (s: 0) Exon 3 23328 23343 ( 16 n); cDNA 262 277 ( 16 n); score: 0.688 Intron 3 23344 25742 (2399 n); Pd: 0.000 (s: 0), Pa: 0.979 (s: 0) Exon 4 25743 25748 ( 6 n); cDNA 278 283 ( 6 n); score: 0.833 Intron 4 25749 26537 ( 789 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 26538 26564 ( 27 n); cDNA 284 311 ( 28 n); score: 0.833 Intron 5 26565 26598 ( 34 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 6 26599 26870 ( 272 n); cDNA 312 580 ( 269 n); score: 0.869 MATCH C08HBa0167P18.1+ SGN-E204223+ 0.869 357 0.616 C PGS_C08HBa0167P18.1+_SGN-E204223+ (22028 22032,22822 22852,23328 23343,25743 25748,26538 26564,26599 26870) Alignment (genomic DNA sequence = upper lines): AAAATGTGAT TGCCGCAACT ATTCCAGCCT CTGGAAATGT TTCTGCAACT GTAGCGAATA 22087 ||||| AAAAT..... .......... .......... .......... .......... .......... 230 ACTCTACAGT TTAATCGGGT GATTTGCAAA TCATTCAAGC CTCTTATCGG TTGAATGGAA 22147 .......... .......... .......... .......... .......... .......... 230 AAAAATTACC TAAAATGGGC TCAACCGGTT CATACCTTTT TAAAGGGTAA AGGGAAAATA 22207 .......... .......... .......... .......... .......... .......... 230 CGACACCTTC TTGGTACAGG ACCATCTAAA GAAGACACCA CATTTGATGT ATGGGATGAA 22267 .......... .......... .......... .......... .......... .......... 230 CATGATGCAA TGGTGATGTC TTGGTTATGG AACTCTATGC TTCCAGAAAT CAGCGATAGC 22327 .......... .......... .......... .......... .......... .......... 230 ACTATGTTCC TGAGCACCCC TAAGGAAATT TGGGATGCAG TGAAGGAGAC AACTCTAAAG 22387 .......... .......... .......... .......... .......... .......... 230 TACATGATGC TGCCAGGACC TATGAAATAA AAACAAATTC TGCAGAACCC AATTTAGATC 22447 .......... .......... .......... .......... .......... .......... 230 TATAGCTATG GGAGTTTATG AGTTGTTATG GTTAAAGATA ATCCTTGATT ATTTGAAGAT 22507 .......... .......... .......... .......... .......... .......... 230 AAGATGGGAA GGACCTACGA GACTATTGTG ACAATAAATC AGCAATAAGT ATAGCTCATA 22567 .......... .......... .......... .......... .......... .......... 230 ATCATGTACA ACATGATCGC ACAAAGCATA CTGAGGTAGA TAGACATTTC ATTAAGGAGA 22627 .......... .......... .......... .......... .......... .......... 230 AATTAGATAG GGGACACATT TGTACATCAT TTGTATCTAA AAAAGAACAG GTGGCCGATG 22687 .......... .......... .......... .......... .......... .......... 230 TTTTAACAAA AGGACTACCA AATAATGCGT TTCAAGATCC AATACGCAAG CTAGGAATGG 22747 .......... .......... .......... .......... .......... .......... 230 AAGATATCCA TTCACCCGCT AGAGGGGAGT GTTGACTGAT AGAGGATATA CTCCATATCA 22807 .......... .......... .......... .......... .......... .......... 230 AAACTTGATC CTCTAAGACC TTAAAGATAA TTGTTGTAAT TTAGAATATC TTTTTCTCCT 22867 || ||| | | || || | | || || || .......... ....AATTAA TTATACAAAA TTATGTTTAT TTTGA..... .......... 261 TTTTTTTTGA AAAATATATG ATTTTATAGA ATCCCAGATT TCATGGGATC TAGGTGATTC 22927 .......... .......... .......... .......... .......... .......... 261 TGTTCCACAA CCTCTCATGT ATATAAATCC ATGTATATGA CATAGAAAGA TATGAATTAA 22987 .......... .......... .......... .......... .......... .......... 261 ACTATTCAAC TATCTTATTC CACTAACCAC CAAAATTGGC ACAAATGCGG TGATAGCATC 23047 .......... .......... .......... .......... .......... .......... 261 TAGCATCGCA GGTTATATAG AGAAAGTGAA TAAATATAAA ACCTAAATAA ACAAACCTTG 23107 .......... .......... .......... .......... .......... .......... 261 TTTCTCATAT AAAGAAGAGA GGGTATTAGA AAACAACTAT TATTGACCGA AAAATCTTTA 23167 .......... .......... .......... .......... .......... .......... 261 TCTTTAAATG ACAAAGAAAC CAATGAGGGA AATTCTAATT CTGAAGATTC CTATCTTTTT 23227 .......... .......... .......... .......... .......... .......... 261 TCCTAAATTC AAAATCTTGG TCCGAGTTGA TGGGATGATG TCACTATGAA ATGTACTGAC 23287 .......... .......... .......... .......... .......... .......... 261 TACTATATAA TGACAGACAT TATATCTGGC AAACGATCAG TGCAGAAATA CATGAAAGTA 23347 | | |||| |||| | .......... .......... .......... .......... TCGAAAAATT CATGTA.... 277 TGGTTACACA AGAGCCCAAG AGATCACACA CGATGCAAAA TAGAAACTAG TTGGCACATG 23407 .......... .......... .......... .......... .......... .......... 277 CATTTTGGAG ATGCTCAAAC TGGTCTTTTT GCATGTTCAG AGATGAAACA TGAATCAGAC 23467 .......... .......... .......... .......... .......... .......... 277 AAGAGTATGA AAACCTGACG CTCCAGGAGG TATTAGGAAT CCTCTTTACT CGCTTTTACT 23527 .......... .......... .......... .......... .......... .......... 277 GTTTTACAAG TATTGGATGT TAAAGGGTTC AAGAGAACAC TGCATGGGAG TTCCAATAAC 23587 .......... .......... .......... .......... .......... .......... 277 TATGTATCAA TCCCAAACTA GTTGAGGTTG GGCAGTAATC CATTATATAA TCCGCTCTGT 23647 .......... .......... .......... .......... .......... .......... 277 TCTCATTCAT ATCCCTCCAA TATTAGTAAC CAATTTGTCT TTTTAGTCAA AAACACAGAT 23707 .......... .......... .......... .......... .......... .......... 277 TTTCCCAAAA CTAGAAGTTC TGAATCTCAT ACTTAACCAT TTCAAGACCT ACTGCAAGTG 23767 .......... .......... .......... .......... .......... .......... 277 TAACAACAAT AACCTCTTAA TCTGAACTAG TTAGTATTGC CTATATGATC CTTGTTCTCT 23827 .......... .......... .......... .......... .......... .......... 277 TTCTTTAATC TATTCTTAGT TAAATCCACA TACTAATATT CCTAGAGATT GTAGCTTAGA 23887 .......... .......... .......... .......... .......... .......... 277 TGGGAGTTTG TCCGAAGAAG TATTAGTAGT AGTACTAAAG TCTGCTCATA AATTTGTTGT 23947 .......... .......... .......... .......... .......... .......... 277 TAGCACATCT TAATTCTTAG CATAATATAA ACTCCGCATA TAAGACATAA GTGGTGCTTT 24007 .......... .......... .......... .......... .......... .......... 277 AAAGATGAAA CAGGACAGTA ACTGAATTAG TAGATTTCTG CAGGATACCC CCAGGTGCAA 24067 .......... .......... .......... .......... .......... .......... 277 AAGCTTTTAA TCTGTCTGAA AAGTGAATGA GATTCAGATG CAAAGGTTGA ACTGTGTAAA 24127 .......... .......... .......... .......... .......... .......... 277 TCTTGCGCTG ATTTTGGATA TCAAATACTC CACCCTAAGG AAATTTTTTT AGTATGGTAA 24187 .......... .......... .......... .......... .......... .......... 277 CAGTATTTTA AATCAGCACA GAAGCAGTGC TGCAGACATA TGTACAATTA AAAAGGCCAC 24247 .......... .......... .......... .......... .......... .......... 277 AATTGTATCC TGTATTATCT TACTAAGAAT CTAACATGTC AACTAAGGAT TCTGAATCAT 24307 .......... .......... .......... .......... .......... .......... 277 CTACAACATT TTCTTTACAC CAAAAGTCAA ACAAAAGAAT ACAGTTACAT TCTTCAAAAC 24367 .......... .......... .......... .......... .......... .......... 277 ATCTAGCATT TCTATCTTTC CCAATTGTCA ATCATATACA TGTAGACATA GTTCTCCACC 24427 .......... .......... .......... .......... .......... .......... 277 ATAACTTCTG ATTTACACAG TCAAAATCAT AGTGCGAGCA ACAGGATATA GGCTGAATTA 24487 .......... .......... .......... .......... .......... .......... 277 GGCTAAACAG CTTGGCAGTA TATCACCATA ACCAGTAGTA TGTCAATGTG TACAAGCAGC 24547 .......... .......... .......... .......... .......... .......... 277 CAATTTCCAA ATCTGAGGTA TCTTAGCATC ATAATTACAT ACTCTACCAG AGAGTAGAAG 24607 .......... .......... .......... .......... .......... .......... 277 CAACATTGAT AAAAGTAGGC ATATAATGAA AACCAAATAG AAAAAAAATA ATGAAGGCAA 24667 .......... .......... .......... .......... .......... .......... 277 TTGCTCTTCT CACCTGTCCT CTGATGAGCA TTTCAGATTT CTTTAACTTC TTCATGGCAT 24727 .......... .......... .......... .......... .......... .......... 277 AAATGTTACC CGATTTCTTC TCCCTGCATA ATCTTACCTG CAGAGCACAT TCACGTATTA 24787 .......... .......... .......... .......... .......... .......... 277 GAATTGGGAG TGTTCTGTAA AAAGATAAGT TCAATAGCAG CACAATCCAT GTACACAGAA 24847 .......... .......... .......... .......... .......... .......... 277 GAAGAAGATA TTGGTGAATA TAGTGATTTT GATTTTATTG AGAAGGTAAC ATTTATTATA 24907 .......... .......... .......... .......... .......... .......... 277 TATTATCAAA ACAGCAGTAA GATTGCTCGA ACCATATTTT AAAGTGAAAA AAGAAGAGAA 24967 .......... .......... .......... .......... .......... .......... 277 CTGCTCCGGA GACCTTAACA AAACACTATG GTGTCCATCA TTGAAGCGAT ATCTTCTATG 25027 .......... .......... .......... .......... .......... .......... 277 TAACTCTTGT TAGACCAAAA ACATAAAAGT CTAAAGCAAT TCAACTTAAT CCTCTGAAGT 25087 .......... .......... .......... .......... .......... .......... 277 GAACTGCTAA CATCTTCAAA ACATCTGGAC TTTCTCTCTT TCCAGATTGT CCCCCAAACA 25147 .......... .......... .......... .......... .......... .......... 277 CAAGCAGGAA CCATCCTCCA TCTACCTCTG TGTATCAATC CTACACCTGT TTCTTCCCAG 25207 .......... .......... .......... .......... .......... .......... 277 CTAAGCAAGA CCTCAGTAAT CTTCCTTGGT GTTGTCCAAA TAAAACCTCT GAGGTTAGTC 25267 .......... .......... .......... .......... .......... .......... 277 ATTTCGATTT TCTCCCCAAG GACATTTGAA TACTGACTCC AACATCAACC ATGAAAGCCA 25327 .......... .......... .......... .......... .......... .......... 277 GCAATAAGCA TTAATGCTAA CATAGATATC GAATCATATA GAGAATAAGA TACTCATTGT 25387 .......... .......... .......... .......... .......... .......... 277 CCCAAGAGGT GCAAAGCCAT AATAGTCCCC ACTCGCCCGC AAATAGAATA GGTAGTTATT 25447 .......... .......... .......... .......... .......... .......... 277 TATGGGACAT GAGGTGCAAC TTCATTCATT GAAAGCCTTG TTCTTGTGTA GTCATGGTCC 25507 .......... .......... .......... .......... .......... .......... 277 CAAGCGATGC TAGCAATTAT AGTCCCACTT CTCCCTAAAA TAGAACGATA GTTTTTTCTG 25567 .......... .......... .......... .......... .......... .......... 277 GGAGAGGAAA TGTAACTTTA TTCACTGAAA GTTTCATTGT TATGTAGTTT GTTTTGGTAG 25627 .......... .......... .......... .......... .......... .......... 277 AACTTGTCAT TTAAAAAAGA AGACCAATTT TTTTGGAAAT TTCTGCAATC ATTCTTCAAG 25687 .......... .......... .......... .......... .......... .......... 277 TTAGACTTTA GACTGAATAT GTCTGTGTGT TGTTGTTTGA CATCTAACAT GGTAGGCGTT 25747 | ||| .......... .......... .......... .......... .......... .....GAGTT 282 CATAAAATGG ACCTTGGGCC TAGATCCCAA AAGTTAGCTC ATGAGATGAG GGTTCTCCAA 25807 | C......... .......... .......... .......... .......... .......... 283 CATAATAACA TAAGGACACA AAAAGAGAAA ATGCCCACCA GATCGCGAGC ACTCAAATAG 25867 .......... .......... .......... .......... .......... .......... 283 CATGTACTTT CTACTTCCCC ATATATTTTA TTGGACGAGA TTTGACTGTA TACGGAATTT 25927 .......... .......... .......... .......... .......... .......... 283 AAAATAATTA TTGACTTTTG TGTAATGTCA ATTGAGATGG AAAAATAATA TTGTACTGGC 25987 .......... .......... .......... .......... .......... .......... 283 TGAAAAGTTT TTTTTATAGA GAAACCTTTC TAGATTGAAT TAAAACATCA AATGAATTTG 26047 .......... .......... .......... .......... .......... .......... 283 AAATTTCCTT AACCTGATGT ACCTAAAAGA ACAATTTGTG GAAATTGCAA TTTTATGAAT 26107 .......... .......... .......... .......... .......... .......... 283 AGAAATGTCA ACCTTCTGGA ATTTACCAAA ATATTAGGTG TCATATAGAT GTTAGAAGTA 26167 .......... .......... .......... .......... .......... .......... 283 TATTACTTTT TTATATTATC AGTTTCTTTA TATCCAAGCA TTTGTATGAA TATAATTCAA 26227 .......... .......... .......... .......... .......... .......... 283 ATACAGTAGA AATGGAAACG GAAGATCATG AAAGGAAACC ATTTACTTGC AACGTGAACA 26287 .......... .......... .......... .......... .......... .......... 283 AACAAAACTC AGACCTTAAA GGAATAATAC TGACCTCACC GTAGGCTCCT CTGCCAATAA 26347 .......... .......... .......... .......... .......... .......... 283 TTGTTAGAAG TTCAAAATCA TCCACACATA TTTTGTGCCT CTTCAGTCTC ATAAACTCCG 26407 .......... .......... .......... .......... .......... .......... 283 TCTCCTTTTG CTCTAGATCT TTGATCAGAT GCATTTGCTC TTCTTTAGGC ACATCAGAAG 26467 .......... .......... .......... .......... .......... .......... 283 ATGCTAACTT TCTTTCTAGA ATCCAACGCC TATTTTTAGA CAATGTTGTA ACAAATATAA 26527 .......... .......... .......... .......... .......... .......... 283 GACAAGGAAG ATATTTAGGG CCCGTTTGGA TGG-CTTAAT AAAAGCAGCT TTAAAAAAGT 26586 || |||||| |||||||||| ||| |||| .......... ATTCTTAGGG CCCGTTTGGA TGGACTTA.. .......... .......... 311 ATTTTTGAAA GTGCTGAAAC TTATTTTTAA AATAAACAGT TTTGCGTTTG GATAAAAGTG 26646 ||| || | | | |||| ||| | ||| |||| |||||||||| .......... ..GCTTTAAA AAAGTACT-- TTTAAA-AGT TATGCATTTG GATAAAAGTG 356 CTGAAATTGC TATGTCAAAC GTGAAAAGGG AAAAATGGAA GAAAGAGATG TTAGGGTTAT 26706 |||| |||| |||| ||||| ||||||| || |||||||||| |||||||||| |||| ||||| TTGAAGTTGC TATGCCAAAC GTGAAAATGG AAAAATGGAA GAAAGAGATG TTAGAGTTAT 416 GTGGGTAATT TGGAGATTGT ATAAAAATAT TAAGGGCAAA AAGATAAAAA TGTGGTCAAC 26766 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGATAATT TGGAGATTGT ATAAAAATAT TAAGGGCAAA AAGATAAAAA TGTGGTCAAC 476 TTAAAACAGC TTATAAGCTA AAAAAAAAAA AGCACCCCTA CCCCATCTTT TAACTTTTGA 26826 |||||||||| ||||||||| |||||||| |||||||||| ||||| |||| ||||||||| TTAAAACAGC TTATAAGCT- --AAAAAAAA AGCACCCCTA CCCCAGCTTT TAACTTTTGG 533 CTTAAAATAA G---TTTTTT TGAACCTAAA ATAAGTTATT TTGAGTA 26870 |||||||||| | |||||| | ||| |||| |||||||||| ||||||| CTTAAAATAA GTTTTTTTTT TTAACTTAAA ATAAGTTATT TTGAGTA 580 hqPGS_C08HBa0167P18.1+_SGN-E204223+ (26538 26564,26599 26870) ******************************************************************************** EST sequence 11 +strand 554 n (File: SGN-E374844+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAATA 541 TAAGTTTTTT TTTT Predicted gene structure (within gDNA segment 21035 to 27781): Exon 1 22028 22032 ( 5 n); cDNA 226 230 ( 5 n); score: 1.000 Intron 1 22033 22821 ( 789 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 22822 22852 ( 31 n); cDNA 231 261 ( 31 n); score: 0.613 Intron 2 22853 23327 ( 475 n); Pd: 0.900 (s: 0), Pa: 0.879 (s: 0) Exon 3 23328 23343 ( 16 n); cDNA 262 277 ( 16 n); score: 0.688 Intron 3 23344 25742 (2399 n); Pd: 0.000 (s: 0), Pa: 0.979 (s: 0) Exon 4 25743 25748 ( 6 n); cDNA 278 283 ( 6 n); score: 0.833 Intron 4 25749 26537 ( 789 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 26538 26564 ( 27 n); cDNA 284 311 ( 28 n); score: 0.833 Intron 5 26565 26598 ( 34 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 6 26599 26844 ( 246 n); cDNA 312 551 ( 240 n); score: 0.890 MATCH C08HBa0167P18.1+ SGN-E374844+ 0.890 331 0.597 C PGS_C08HBa0167P18.1+_SGN-E374844+ (22028 22032,22822 22852,23328 23343,25743 25748,26538 26564,26599 26844) Alignment (genomic DNA sequence = upper lines): AAAATGTGAT TGCCGCAACT ATTCCAGCCT CTGGAAATGT TTCTGCAACT GTAGCGAATA 22087 ||||| AAAAT..... .......... .......... .......... .......... .......... 230 ACTCTACAGT TTAATCGGGT GATTTGCAAA TCATTCAAGC CTCTTATCGG TTGAATGGAA 22147 .......... .......... .......... .......... .......... .......... 230 AAAAATTACC TAAAATGGGC TCAACCGGTT CATACCTTTT TAAAGGGTAA AGGGAAAATA 22207 .......... .......... .......... .......... .......... .......... 230 CGACACCTTC TTGGTACAGG ACCATCTAAA GAAGACACCA CATTTGATGT ATGGGATGAA 22267 .......... .......... .......... .......... .......... .......... 230 CATGATGCAA TGGTGATGTC TTGGTTATGG AACTCTATGC TTCCAGAAAT CAGCGATAGC 22327 .......... .......... .......... .......... .......... .......... 230 ACTATGTTCC TGAGCACCCC TAAGGAAATT TGGGATGCAG TGAAGGAGAC AACTCTAAAG 22387 .......... .......... .......... .......... .......... .......... 230 TACATGATGC TGCCAGGACC TATGAAATAA AAACAAATTC TGCAGAACCC AATTTAGATC 22447 .......... .......... .......... .......... .......... .......... 230 TATAGCTATG GGAGTTTATG AGTTGTTATG GTTAAAGATA ATCCTTGATT ATTTGAAGAT 22507 .......... .......... .......... .......... .......... .......... 230 AAGATGGGAA GGACCTACGA GACTATTGTG ACAATAAATC AGCAATAAGT ATAGCTCATA 22567 .......... .......... .......... .......... .......... .......... 230 ATCATGTACA ACATGATCGC ACAAAGCATA CTGAGGTAGA TAGACATTTC ATTAAGGAGA 22627 .......... .......... .......... .......... .......... .......... 230 AATTAGATAG GGGACACATT TGTACATCAT TTGTATCTAA AAAAGAACAG GTGGCCGATG 22687 .......... .......... .......... .......... .......... .......... 230 TTTTAACAAA AGGACTACCA AATAATGCGT TTCAAGATCC AATACGCAAG CTAGGAATGG 22747 .......... .......... .......... .......... .......... .......... 230 AAGATATCCA TTCACCCGCT AGAGGGGAGT GTTGACTGAT AGAGGATATA CTCCATATCA 22807 .......... .......... .......... .......... .......... .......... 230 AAACTTGATC CTCTAAGACC TTAAAGATAA TTGTTGTAAT TTAGAATATC TTTTTCTCCT 22867 || ||| | | || || | | || || || .......... ....AATTAA TTATACAAAA TTATGTTTAT TTTGA..... .......... 261 TTTTTTTTGA AAAATATATG ATTTTATAGA ATCCCAGATT TCATGGGATC TAGGTGATTC 22927 .......... .......... .......... .......... .......... .......... 261 TGTTCCACAA CCTCTCATGT ATATAAATCC ATGTATATGA CATAGAAAGA TATGAATTAA 22987 .......... .......... .......... .......... .......... .......... 261 ACTATTCAAC TATCTTATTC CACTAACCAC CAAAATTGGC ACAAATGCGG TGATAGCATC 23047 .......... .......... .......... .......... .......... .......... 261 TAGCATCGCA GGTTATATAG AGAAAGTGAA TAAATATAAA ACCTAAATAA ACAAACCTTG 23107 .......... .......... .......... .......... .......... .......... 261 TTTCTCATAT AAAGAAGAGA GGGTATTAGA AAACAACTAT TATTGACCGA AAAATCTTTA 23167 .......... .......... .......... .......... .......... .......... 261 TCTTTAAATG ACAAAGAAAC CAATGAGGGA AATTCTAATT CTGAAGATTC CTATCTTTTT 23227 .......... .......... .......... .......... .......... .......... 261 TCCTAAATTC AAAATCTTGG TCCGAGTTGA TGGGATGATG TCACTATGAA ATGTACTGAC 23287 .......... .......... .......... .......... .......... .......... 261 TACTATATAA TGACAGACAT TATATCTGGC AAACGATCAG TGCAGAAATA CATGAAAGTA 23347 | | |||| |||| | .......... .......... .......... .......... TCGAAAAATT CATGTA.... 277 TGGTTACACA AGAGCCCAAG AGATCACACA CGATGCAAAA TAGAAACTAG TTGGCACATG 23407 .......... .......... .......... .......... .......... .......... 277 CATTTTGGAG ATGCTCAAAC TGGTCTTTTT GCATGTTCAG AGATGAAACA TGAATCAGAC 23467 .......... .......... .......... .......... .......... .......... 277 AAGAGTATGA AAACCTGACG CTCCAGGAGG TATTAGGAAT CCTCTTTACT CGCTTTTACT 23527 .......... .......... .......... .......... .......... .......... 277 GTTTTACAAG TATTGGATGT TAAAGGGTTC AAGAGAACAC TGCATGGGAG TTCCAATAAC 23587 .......... .......... .......... .......... .......... .......... 277 TATGTATCAA TCCCAAACTA GTTGAGGTTG GGCAGTAATC CATTATATAA TCCGCTCTGT 23647 .......... .......... .......... .......... .......... .......... 277 TCTCATTCAT ATCCCTCCAA TATTAGTAAC CAATTTGTCT TTTTAGTCAA AAACACAGAT 23707 .......... .......... .......... .......... .......... .......... 277 TTTCCCAAAA CTAGAAGTTC TGAATCTCAT ACTTAACCAT TTCAAGACCT ACTGCAAGTG 23767 .......... .......... .......... .......... .......... .......... 277 TAACAACAAT AACCTCTTAA TCTGAACTAG TTAGTATTGC CTATATGATC CTTGTTCTCT 23827 .......... .......... .......... .......... .......... .......... 277 TTCTTTAATC TATTCTTAGT TAAATCCACA TACTAATATT CCTAGAGATT GTAGCTTAGA 23887 .......... .......... .......... .......... .......... .......... 277 TGGGAGTTTG TCCGAAGAAG TATTAGTAGT AGTACTAAAG TCTGCTCATA AATTTGTTGT 23947 .......... .......... .......... .......... .......... .......... 277 TAGCACATCT TAATTCTTAG CATAATATAA ACTCCGCATA TAAGACATAA GTGGTGCTTT 24007 .......... .......... .......... .......... .......... .......... 277 AAAGATGAAA CAGGACAGTA ACTGAATTAG TAGATTTCTG CAGGATACCC CCAGGTGCAA 24067 .......... .......... .......... .......... .......... .......... 277 AAGCTTTTAA TCTGTCTGAA AAGTGAATGA GATTCAGATG CAAAGGTTGA ACTGTGTAAA 24127 .......... .......... .......... .......... .......... .......... 277 TCTTGCGCTG ATTTTGGATA TCAAATACTC CACCCTAAGG AAATTTTTTT AGTATGGTAA 24187 .......... .......... .......... .......... .......... .......... 277 CAGTATTTTA AATCAGCACA GAAGCAGTGC TGCAGACATA TGTACAATTA AAAAGGCCAC 24247 .......... .......... .......... .......... .......... .......... 277 AATTGTATCC TGTATTATCT TACTAAGAAT CTAACATGTC AACTAAGGAT TCTGAATCAT 24307 .......... .......... .......... .......... .......... .......... 277 CTACAACATT TTCTTTACAC CAAAAGTCAA ACAAAAGAAT ACAGTTACAT TCTTCAAAAC 24367 .......... .......... .......... .......... .......... .......... 277 ATCTAGCATT TCTATCTTTC CCAATTGTCA ATCATATACA TGTAGACATA GTTCTCCACC 24427 .......... .......... .......... .......... .......... .......... 277 ATAACTTCTG ATTTACACAG TCAAAATCAT AGTGCGAGCA ACAGGATATA GGCTGAATTA 24487 .......... .......... .......... .......... .......... .......... 277 GGCTAAACAG CTTGGCAGTA TATCACCATA ACCAGTAGTA TGTCAATGTG TACAAGCAGC 24547 .......... .......... .......... .......... .......... .......... 277 CAATTTCCAA ATCTGAGGTA TCTTAGCATC ATAATTACAT ACTCTACCAG AGAGTAGAAG 24607 .......... .......... .......... .......... .......... .......... 277 CAACATTGAT AAAAGTAGGC ATATAATGAA AACCAAATAG AAAAAAAATA ATGAAGGCAA 24667 .......... .......... .......... .......... .......... .......... 277 TTGCTCTTCT CACCTGTCCT CTGATGAGCA TTTCAGATTT CTTTAACTTC TTCATGGCAT 24727 .......... .......... .......... .......... .......... .......... 277 AAATGTTACC CGATTTCTTC TCCCTGCATA ATCTTACCTG CAGAGCACAT TCACGTATTA 24787 .......... .......... .......... .......... .......... .......... 277 GAATTGGGAG TGTTCTGTAA AAAGATAAGT TCAATAGCAG CACAATCCAT GTACACAGAA 24847 .......... .......... .......... .......... .......... .......... 277 GAAGAAGATA TTGGTGAATA TAGTGATTTT GATTTTATTG AGAAGGTAAC ATTTATTATA 24907 .......... .......... .......... .......... .......... .......... 277 TATTATCAAA ACAGCAGTAA GATTGCTCGA ACCATATTTT AAAGTGAAAA AAGAAGAGAA 24967 .......... .......... .......... .......... .......... .......... 277 CTGCTCCGGA GACCTTAACA AAACACTATG GTGTCCATCA TTGAAGCGAT ATCTTCTATG 25027 .......... .......... .......... .......... .......... .......... 277 TAACTCTTGT TAGACCAAAA ACATAAAAGT CTAAAGCAAT TCAACTTAAT CCTCTGAAGT 25087 .......... .......... .......... .......... .......... .......... 277 GAACTGCTAA CATCTTCAAA ACATCTGGAC TTTCTCTCTT TCCAGATTGT CCCCCAAACA 25147 .......... .......... .......... .......... .......... .......... 277 CAAGCAGGAA CCATCCTCCA TCTACCTCTG TGTATCAATC CTACACCTGT TTCTTCCCAG 25207 .......... .......... .......... .......... .......... .......... 277 CTAAGCAAGA CCTCAGTAAT CTTCCTTGGT GTTGTCCAAA TAAAACCTCT GAGGTTAGTC 25267 .......... .......... .......... .......... .......... .......... 277 ATTTCGATTT TCTCCCCAAG GACATTTGAA TACTGACTCC AACATCAACC ATGAAAGCCA 25327 .......... .......... .......... .......... .......... .......... 277 GCAATAAGCA TTAATGCTAA CATAGATATC GAATCATATA GAGAATAAGA TACTCATTGT 25387 .......... .......... .......... .......... .......... .......... 277 CCCAAGAGGT GCAAAGCCAT AATAGTCCCC ACTCGCCCGC AAATAGAATA GGTAGTTATT 25447 .......... .......... .......... .......... .......... .......... 277 TATGGGACAT GAGGTGCAAC TTCATTCATT GAAAGCCTTG TTCTTGTGTA GTCATGGTCC 25507 .......... .......... .......... .......... .......... .......... 277 CAAGCGATGC TAGCAATTAT AGTCCCACTT CTCCCTAAAA TAGAACGATA GTTTTTTCTG 25567 .......... .......... .......... .......... .......... .......... 277 GGAGAGGAAA TGTAACTTTA TTCACTGAAA GTTTCATTGT TATGTAGTTT GTTTTGGTAG 25627 .......... .......... .......... .......... .......... .......... 277 AACTTGTCAT TTAAAAAAGA AGACCAATTT TTTTGGAAAT TTCTGCAATC ATTCTTCAAG 25687 .......... .......... .......... .......... .......... .......... 277 TTAGACTTTA GACTGAATAT GTCTGTGTGT TGTTGTTTGA CATCTAACAT GGTAGGCGTT 25747 | ||| .......... .......... .......... .......... .......... .....GAGTT 282 CATAAAATGG ACCTTGGGCC TAGATCCCAA AAGTTAGCTC ATGAGATGAG GGTTCTCCAA 25807 | C......... .......... .......... .......... .......... .......... 283 CATAATAACA TAAGGACACA AAAAGAGAAA ATGCCCACCA GATCGCGAGC ACTCAAATAG 25867 .......... .......... .......... .......... .......... .......... 283 CATGTACTTT CTACTTCCCC ATATATTTTA TTGGACGAGA TTTGACTGTA TACGGAATTT 25927 .......... .......... .......... .......... .......... .......... 283 AAAATAATTA TTGACTTTTG TGTAATGTCA ATTGAGATGG AAAAATAATA TTGTACTGGC 25987 .......... .......... .......... .......... .......... .......... 283 TGAAAAGTTT TTTTTATAGA GAAACCTTTC TAGATTGAAT TAAAACATCA AATGAATTTG 26047 .......... .......... .......... .......... .......... .......... 283 AAATTTCCTT AACCTGATGT ACCTAAAAGA ACAATTTGTG GAAATTGCAA TTTTATGAAT 26107 .......... .......... .......... .......... .......... .......... 283 AGAAATGTCA ACCTTCTGGA ATTTACCAAA ATATTAGGTG TCATATAGAT GTTAGAAGTA 26167 .......... .......... .......... .......... .......... .......... 283 TATTACTTTT TTATATTATC AGTTTCTTTA TATCCAAGCA TTTGTATGAA TATAATTCAA 26227 .......... .......... .......... .......... .......... .......... 283 ATACAGTAGA AATGGAAACG GAAGATCATG AAAGGAAACC ATTTACTTGC AACGTGAACA 26287 .......... .......... .......... .......... .......... .......... 283 AACAAAACTC AGACCTTAAA GGAATAATAC TGACCTCACC GTAGGCTCCT CTGCCAATAA 26347 .......... .......... .......... .......... .......... .......... 283 TTGTTAGAAG TTCAAAATCA TCCACACATA TTTTGTGCCT CTTCAGTCTC ATAAACTCCG 26407 .......... .......... .......... .......... .......... .......... 283 TCTCCTTTTG CTCTAGATCT TTGATCAGAT GCATTTGCTC TTCTTTAGGC ACATCAGAAG 26467 .......... .......... .......... .......... .......... .......... 283 ATGCTAACTT TCTTTCTAGA ATCCAACGCC TATTTTTAGA CAATGTTGTA ACAAATATAA 26527 .......... .......... .......... .......... .......... .......... 283 GACAAGGAAG ATATTTAGGG CCCGTTTGGA TGG-CTTAAT AAAAGCAGCT TTAAAAAAGT 26586 || |||||| |||||||||| ||| |||| .......... ATTCTTAGGG CCCGTTTGGA TGGACTTA.. .......... .......... 311 ATTTTTGAAA GTGCTGAAAC TTATTTTTAA AATAAACAGT TTTGCGTTTG GATAAAAGTG 26646 ||| || | | | |||| ||| | ||| |||| |||||||||| .......... ..GCTTTAAA AAAGTACT-- TTTAAA-AGT TATGCATTTG GATAAAAGTG 356 CTGAAATTGC TATGTCAAAC GTGAAAAGGG AAAAATGGAA GAAAGAGATG TTAGGGTTAT 26706 |||| |||| |||| ||||| ||||||| || |||||||||| |||||||||| |||| ||||| TTGAAGTTGC TATGCCAAAC GTGAAAATGG AAAAATGGAA GAAAGAGATG TTAGAGTTAT 416 GTGGGTAATT TGGAGATTGT ATAAAAATAT TAAGGGCAAA AAGATAAAAA TGTGGTCAAC 26766 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGATAATT TGGAGATTGT ATAAAAATAT TAAGGGCAAA AAGATAAAAA TGTGGTCAAC 476 TTAAAACAGC TTATAAGCTA AAAAAAAAAA AGCACCCCTA CCCCATCTTT TAACTTTTGA 26826 |||||||||| ||||||||| |||||||| |||||||||| ||||| |||| ||||||||| TTAAAACAGC TTATAAGCT- --AAAAAAAA AGCACCCCTA CCCCAGCTTT TAACTTTTGG 533 CTTAAAATAA GTTTTTTT 26844 ||||| |||| |||||||| CTTAATATAA GTTTTTTT 551 hqPGS_C08HBa0167P18.1+_SGN-E374844+ (26538 26564,26599 26844) ******************************************************************************** EST sequence 2 +strand 528 n (File: SGN-E242674+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACC Predicted gene structure (within gDNA segment 25922 to 30403): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 264 268 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 269 288 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 289 316 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E242674+ 0.893 315 0.597 C PGS_C08HBa0167P18.1+_SGN-E242674+ (26693 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAAGTGT ACCTTAGTTA TACTCTCAAG CTATTGTGGG 26988 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA.... .......... .......... .......... 263 TTTAAATAGT GATGTACACA TTCTAAAATA GGAACGATTA TCAAGATTAT AGATCCTACA 27048 .......... .......... .......... .......... .......... .......... 263 GGAAATTAAC ATGGTGATAG TTATAGATCC TAAATGCATG CATATATATA TATATATATA 27108 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TTAACAATCA TGCCTGTACA CATAGCATGC TAAGCTTCTT 27168 .......... .......... .......... .......... .......... .......... 263 CTTTTACTTT CTTTTTCCTT CTTTTTTTTT TTTTTGGGGG GGGGGGGGTG GGGGGGGGGA 27228 .......... .......... .......... .......... .......... .......... 263 GGAGGGGGAG GAGGAGGTGG GTTTAGTCTT AGTGAAATAT AGTCAAAGAA ATGTCAAGAT 27288 .......... .......... .......... .......... .......... .......... 263 TAACAAGTGA ACTCTAGAAA AGATCAACTT TGTTTTTTTG CTTAAAAGTT TAAATTGCTA 27348 .......... .......... .......... .......... .......... .......... 263 TTTCTTTTTT TATTGATGAA GCAATGGTGA TGGAGAAAAA TCCTTGAATA CAAGATGTAA 27408 ||| .......... .......... .TAATT.... .......... .......... .......... 268 CAAAAGCATC GTTGAATACA AGAATGTAAC AAAAGCAATT AACATCGTAG GAAACATGCT 27468 .......... .......... .......... .......... .......... .......... 268 TTTCTACAAT AGCACCTAAT CTTTTGTAAC AGGCATCTCA TACGTGTTCC TACTGTATAC 27528 ||| ||||| | | | .......... .......... .......... ..TTTTCTTT TACGTATCTC CA........ 288 TACCATATAA GTACAATACC TCAAAACAAA ATGTTGATCA GCTTTTATAT CCTTAGGAAA 27588 .......... .......... .......... .......... .......... .......... 288 TTACATTAAA GTACACATTC CATTTAGATA AAATTGTAAT TACTCTACAG GCCCTCAATT 27648 .......... .......... .......... .......... .......... .......... 288 TATGATTTAT ACTGTAATAA ATTTCTTGAT TCTATTACAC AACTTCCATA CCCATGAGTT 27708 .......... .......... .......... .......... .......... .......... 288 AAGAAAGCAT AAAACTGCTC AGCCTGATCT CCCTAATAGA GTCCCAATTT GGCATTTGCA 27768 .......... .......... .......... .......... .......... .......... 288 TTTGTCACTC TGACCTAGTA AAATCTGGAC CTTTAAAACT GATCATCCAT AAACAACCAG 27828 .......... .......... .......... .......... .......... .......... 288 CTAAAAGTAG GGATTTCGAT ATATAAGACG TCAAAGTCAA ATGCTCATCC CGGATGACAT 27888 .......... .......... .......... .......... .......... .......... 288 ACTATGATCA TCATAGAGTA AGCAGCTTAA GAGTTCATGT CAAGTGATAC ATTTAGACGC 27948 .......... .......... .......... .......... .......... .......... 288 AATACATCAA CAACAACCCC TCCCCCCCCC CCCCGGGCCT TAGTCCTAGT TGGCTTGGCT 28008 .......... .......... .......... .......... .......... .......... 288 GTATGACTCC TCAATATTCA TTCCTCTTCA ATTGGGCCTG TTTCATTCCA CTACTCACAA 28068 .......... .......... .......... .......... .......... .......... 288 TGTAGCCAAA TTGAAACAGT ATACTCGTAA TGCATCATTA GCTCTAAGTC AAGTCACCAC 28128 .......... .......... .......... .......... .......... .......... 288 CGAAATGTTC CGATTATGTA CCACAATTAT ATCTCCTTGT TCAAGTAGTG GATCCAATTT 28188 .......... .......... .......... .......... .......... .......... 288 CGGTGTAACT AAATTAAGTC AAATTATTCC AAATAAGAAT AGCAGTGTTG CCTAGCCATT 28248 .......... .......... .......... .......... .......... .......... 288 TTGCTTTCCA AAAAACAATG TGTTCCACTA CCTACTTTGA AAGAGGAGTT CAAGGAAGAT 28308 .......... .......... .......... .......... .......... .......... 288 TCAACCCAAA GTTTGCTAAT GAACTTCCAA ATATCAGTAC GATGAGGGCA TAATGTACCA 28368 .......... .......... .......... .......... .......... .......... 288 ATGATTTTGC TCTTCATATT TGTGTTTAAC AGTTTTGACT TCTTGTTCCC ACATACCTTA 28428 .......... .......... .......... .......... .......... .......... 288 TTCCTCTAAG TTGTATTTCC ACAACCATTT CATCAACAAA CACTTGATGT GCGCTGCTAG 28488 .......... .......... .......... .......... .......... .......... 288 ATCTTTTATA CCCAAAGTGC CTTGTAATTT TGGTTGAATA ACTTTGGATC ACTTTGTTAT 28548 .......... .......... .......... .......... .......... .......... 288 CATAACCCAG ACCGTTCCCT TCCCACAAAA AAAGATCTTT CGAATCTAGC AAGCTGCTTT 28608 .......... .......... .......... .......... .......... .......... 288 TATAGCTTGA TTAGAATAAG GAAAAAGAGA CATAAAATTA ACGGGGATGC TGTTTAAAAA 28668 .......... .......... .......... .......... .......... .......... 288 GCTACTTATG AGTGTTTATT TTCTACCAAT AGAGGGATAA TACTTTTGCC AGGAAGCCAA 28728 .......... .......... .......... .......... .......... .......... 288 CCTTTCCTGT AGCTTCTCTA ATCACCCAAT TCCAGATCCC AGAGGATTTA AATCTAGCAA 28788 .......... .......... .......... .......... .......... .......... 288 CCAGAGTAAA CCCCAAATAA GTAGTGGTGA ATGTACTTAT ACTGCAACAT ATAATTAAAT 28848 .......... .......... .......... .......... .......... .......... 288 TAGGGGCTTC ATTGACTGAT AATAATGCTT TTGAGCATGT TAATATGTGC CCCTGACAGC 28908 | .......... .......... .......... .......... .......... .........C 289 TTCAAATATC AG-CAATGTA AGTTTGAG 28935 || ||||| || || | || |||||||| TT-AAATAGT AGACATTATA AGTTTGAG 316 hqPGS_C08HBa0167P18.1+_SGN-E242674+ (26693 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 10 +strand 643 n (File: SGN-E233074+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACCAG ACATCACTAA 541 CTTAAGTCAC AAACCCCTTG ACCTTCCCAA TTATATTTAA GCACTAGAAA ACTTATATAT 601 AAAAAATCGA ATTTAACGCT TAATATTTAT CAACTAACAC CTA Predicted gene structure (within gDNA segment 25922 to 31553): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 264 268 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 269 288 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 289 316 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E233074+ 0.893 315 0.490 C PGS_C08HBa0167P18.1+_SGN-E233074+ (26693 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAAGTGT ACCTTAGTTA TACTCTCAAG CTATTGTGGG 26988 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA.... .......... .......... .......... 263 TTTAAATAGT GATGTACACA TTCTAAAATA GGAACGATTA TCAAGATTAT AGATCCTACA 27048 .......... .......... .......... .......... .......... .......... 263 GGAAATTAAC ATGGTGATAG TTATAGATCC TAAATGCATG CATATATATA TATATATATA 27108 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TTAACAATCA TGCCTGTACA CATAGCATGC TAAGCTTCTT 27168 .......... .......... .......... .......... .......... .......... 263 CTTTTACTTT CTTTTTCCTT CTTTTTTTTT TTTTTGGGGG GGGGGGGGTG GGGGGGGGGA 27228 .......... .......... .......... .......... .......... .......... 263 GGAGGGGGAG GAGGAGGTGG GTTTAGTCTT AGTGAAATAT AGTCAAAGAA ATGTCAAGAT 27288 .......... .......... .......... .......... .......... .......... 263 TAACAAGTGA ACTCTAGAAA AGATCAACTT TGTTTTTTTG CTTAAAAGTT TAAATTGCTA 27348 .......... .......... .......... .......... .......... .......... 263 TTTCTTTTTT TATTGATGAA GCAATGGTGA TGGAGAAAAA TCCTTGAATA CAAGATGTAA 27408 ||| .......... .......... .TAATT.... .......... .......... .......... 268 CAAAAGCATC GTTGAATACA AGAATGTAAC AAAAGCAATT AACATCGTAG GAAACATGCT 27468 .......... .......... .......... .......... .......... .......... 268 TTTCTACAAT AGCACCTAAT CTTTTGTAAC AGGCATCTCA TACGTGTTCC TACTGTATAC 27528 ||| ||||| | | | .......... .......... .......... ..TTTTCTTT TACGTATCTC CA........ 288 TACCATATAA GTACAATACC TCAAAACAAA ATGTTGATCA GCTTTTATAT CCTTAGGAAA 27588 .......... .......... .......... .......... .......... .......... 288 TTACATTAAA GTACACATTC CATTTAGATA AAATTGTAAT TACTCTACAG GCCCTCAATT 27648 .......... .......... .......... .......... .......... .......... 288 TATGATTTAT ACTGTAATAA ATTTCTTGAT TCTATTACAC AACTTCCATA CCCATGAGTT 27708 .......... .......... .......... .......... .......... .......... 288 AAGAAAGCAT AAAACTGCTC AGCCTGATCT CCCTAATAGA GTCCCAATTT GGCATTTGCA 27768 .......... .......... .......... .......... .......... .......... 288 TTTGTCACTC TGACCTAGTA AAATCTGGAC CTTTAAAACT GATCATCCAT AAACAACCAG 27828 .......... .......... .......... .......... .......... .......... 288 CTAAAAGTAG GGATTTCGAT ATATAAGACG TCAAAGTCAA ATGCTCATCC CGGATGACAT 27888 .......... .......... .......... .......... .......... .......... 288 ACTATGATCA TCATAGAGTA AGCAGCTTAA GAGTTCATGT CAAGTGATAC ATTTAGACGC 27948 .......... .......... .......... .......... .......... .......... 288 AATACATCAA CAACAACCCC TCCCCCCCCC CCCCGGGCCT TAGTCCTAGT TGGCTTGGCT 28008 .......... .......... .......... .......... .......... .......... 288 GTATGACTCC TCAATATTCA TTCCTCTTCA ATTGGGCCTG TTTCATTCCA CTACTCACAA 28068 .......... .......... .......... .......... .......... .......... 288 TGTAGCCAAA TTGAAACAGT ATACTCGTAA TGCATCATTA GCTCTAAGTC AAGTCACCAC 28128 .......... .......... .......... .......... .......... .......... 288 CGAAATGTTC CGATTATGTA CCACAATTAT ATCTCCTTGT TCAAGTAGTG GATCCAATTT 28188 .......... .......... .......... .......... .......... .......... 288 CGGTGTAACT AAATTAAGTC AAATTATTCC AAATAAGAAT AGCAGTGTTG CCTAGCCATT 28248 .......... .......... .......... .......... .......... .......... 288 TTGCTTTCCA AAAAACAATG TGTTCCACTA CCTACTTTGA AAGAGGAGTT CAAGGAAGAT 28308 .......... .......... .......... .......... .......... .......... 288 TCAACCCAAA GTTTGCTAAT GAACTTCCAA ATATCAGTAC GATGAGGGCA TAATGTACCA 28368 .......... .......... .......... .......... .......... .......... 288 ATGATTTTGC TCTTCATATT TGTGTTTAAC AGTTTTGACT TCTTGTTCCC ACATACCTTA 28428 .......... .......... .......... .......... .......... .......... 288 TTCCTCTAAG TTGTATTTCC ACAACCATTT CATCAACAAA CACTTGATGT GCGCTGCTAG 28488 .......... .......... .......... .......... .......... .......... 288 ATCTTTTATA CCCAAAGTGC CTTGTAATTT TGGTTGAATA ACTTTGGATC ACTTTGTTAT 28548 .......... .......... .......... .......... .......... .......... 288 CATAACCCAG ACCGTTCCCT TCCCACAAAA AAAGATCTTT CGAATCTAGC AAGCTGCTTT 28608 .......... .......... .......... .......... .......... .......... 288 TATAGCTTGA TTAGAATAAG GAAAAAGAGA CATAAAATTA ACGGGGATGC TGTTTAAAAA 28668 .......... .......... .......... .......... .......... .......... 288 GCTACTTATG AGTGTTTATT TTCTACCAAT AGAGGGATAA TACTTTTGCC AGGAAGCCAA 28728 .......... .......... .......... .......... .......... .......... 288 CCTTTCCTGT AGCTTCTCTA ATCACCCAAT TCCAGATCCC AGAGGATTTA AATCTAGCAA 28788 .......... .......... .......... .......... .......... .......... 288 CCAGAGTAAA CCCCAAATAA GTAGTGGTGA ATGTACTTAT ACTGCAACAT ATAATTAAAT 28848 .......... .......... .......... .......... .......... .......... 288 TAGGGGCTTC ATTGACTGAT AATAATGCTT TTGAGCATGT TAATATGTGC CCCTGACAGC 28908 | .......... .......... .......... .......... .......... .........C 289 TTCAAATATC AG-CAATGTA AGTTTGAG 28935 || ||||| || || | || |||||||| TT-AAATAGT AGACATTATA AGTTTGAG 316 hqPGS_C08HBa0167P18.1+_SGN-E233074+ (26693 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 19 +strand 514 n (File: SGN-E233735+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATC Predicted gene structure (within gDNA segment 25922 to 30263): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 264 268 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 269 288 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 289 316 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E233735+ 0.893 315 0.613 C PGS_C08HBa0167P18.1+_SGN-E233735+ (26693 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAAGTGT ACCTTAGTTA TACTCTCAAG CTATTGTGGG 26988 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA.... .......... .......... .......... 263 TTTAAATAGT GATGTACACA TTCTAAAATA GGAACGATTA TCAAGATTAT AGATCCTACA 27048 .......... .......... .......... .......... .......... .......... 263 GGAAATTAAC ATGGTGATAG TTATAGATCC TAAATGCATG CATATATATA TATATATATA 27108 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TTAACAATCA TGCCTGTACA CATAGCATGC TAAGCTTCTT 27168 .......... .......... .......... .......... .......... .......... 263 CTTTTACTTT CTTTTTCCTT CTTTTTTTTT TTTTTGGGGG GGGGGGGGTG GGGGGGGGGA 27228 .......... .......... .......... .......... .......... .......... 263 GGAGGGGGAG GAGGAGGTGG GTTTAGTCTT AGTGAAATAT AGTCAAAGAA ATGTCAAGAT 27288 .......... .......... .......... .......... .......... .......... 263 TAACAAGTGA ACTCTAGAAA AGATCAACTT TGTTTTTTTG CTTAAAAGTT TAAATTGCTA 27348 .......... .......... .......... .......... .......... .......... 263 TTTCTTTTTT TATTGATGAA GCAATGGTGA TGGAGAAAAA TCCTTGAATA CAAGATGTAA 27408 ||| .......... .......... .TAATT.... .......... .......... .......... 268 CAAAAGCATC GTTGAATACA AGAATGTAAC AAAAGCAATT AACATCGTAG GAAACATGCT 27468 .......... .......... .......... .......... .......... .......... 268 TTTCTACAAT AGCACCTAAT CTTTTGTAAC AGGCATCTCA TACGTGTTCC TACTGTATAC 27528 ||| ||||| | | | .......... .......... .......... ..TTTTCTTT TACGTATCTC CA........ 288 TACCATATAA GTACAATACC TCAAAACAAA ATGTTGATCA GCTTTTATAT CCTTAGGAAA 27588 .......... .......... .......... .......... .......... .......... 288 TTACATTAAA GTACACATTC CATTTAGATA AAATTGTAAT TACTCTACAG GCCCTCAATT 27648 .......... .......... .......... .......... .......... .......... 288 TATGATTTAT ACTGTAATAA ATTTCTTGAT TCTATTACAC AACTTCCATA CCCATGAGTT 27708 .......... .......... .......... .......... .......... .......... 288 AAGAAAGCAT AAAACTGCTC AGCCTGATCT CCCTAATAGA GTCCCAATTT GGCATTTGCA 27768 .......... .......... .......... .......... .......... .......... 288 TTTGTCACTC TGACCTAGTA AAATCTGGAC CTTTAAAACT GATCATCCAT AAACAACCAG 27828 .......... .......... .......... .......... .......... .......... 288 CTAAAAGTAG GGATTTCGAT ATATAAGACG TCAAAGTCAA ATGCTCATCC CGGATGACAT 27888 .......... .......... .......... .......... .......... .......... 288 ACTATGATCA TCATAGAGTA AGCAGCTTAA GAGTTCATGT CAAGTGATAC ATTTAGACGC 27948 .......... .......... .......... .......... .......... .......... 288 AATACATCAA CAACAACCCC TCCCCCCCCC CCCCGGGCCT TAGTCCTAGT TGGCTTGGCT 28008 .......... .......... .......... .......... .......... .......... 288 GTATGACTCC TCAATATTCA TTCCTCTTCA ATTGGGCCTG TTTCATTCCA CTACTCACAA 28068 .......... .......... .......... .......... .......... .......... 288 TGTAGCCAAA TTGAAACAGT ATACTCGTAA TGCATCATTA GCTCTAAGTC AAGTCACCAC 28128 .......... .......... .......... .......... .......... .......... 288 CGAAATGTTC CGATTATGTA CCACAATTAT ATCTCCTTGT TCAAGTAGTG GATCCAATTT 28188 .......... .......... .......... .......... .......... .......... 288 CGGTGTAACT AAATTAAGTC AAATTATTCC AAATAAGAAT AGCAGTGTTG CCTAGCCATT 28248 .......... .......... .......... .......... .......... .......... 288 TTGCTTTCCA AAAAACAATG TGTTCCACTA CCTACTTTGA AAGAGGAGTT CAAGGAAGAT 28308 .......... .......... .......... .......... .......... .......... 288 TCAACCCAAA GTTTGCTAAT GAACTTCCAA ATATCAGTAC GATGAGGGCA TAATGTACCA 28368 .......... .......... .......... .......... .......... .......... 288 ATGATTTTGC TCTTCATATT TGTGTTTAAC AGTTTTGACT TCTTGTTCCC ACATACCTTA 28428 .......... .......... .......... .......... .......... .......... 288 TTCCTCTAAG TTGTATTTCC ACAACCATTT CATCAACAAA CACTTGATGT GCGCTGCTAG 28488 .......... .......... .......... .......... .......... .......... 288 ATCTTTTATA CCCAAAGTGC CTTGTAATTT TGGTTGAATA ACTTTGGATC ACTTTGTTAT 28548 .......... .......... .......... .......... .......... .......... 288 CATAACCCAG ACCGTTCCCT TCCCACAAAA AAAGATCTTT CGAATCTAGC AAGCTGCTTT 28608 .......... .......... .......... .......... .......... .......... 288 TATAGCTTGA TTAGAATAAG GAAAAAGAGA CATAAAATTA ACGGGGATGC TGTTTAAAAA 28668 .......... .......... .......... .......... .......... .......... 288 GCTACTTATG AGTGTTTATT TTCTACCAAT AGAGGGATAA TACTTTTGCC AGGAAGCCAA 28728 .......... .......... .......... .......... .......... .......... 288 CCTTTCCTGT AGCTTCTCTA ATCACCCAAT TCCAGATCCC AGAGGATTTA AATCTAGCAA 28788 .......... .......... .......... .......... .......... .......... 288 CCAGAGTAAA CCCCAAATAA GTAGTGGTGA ATGTACTTAT ACTGCAACAT ATAATTAAAT 28848 .......... .......... .......... .......... .......... .......... 288 TAGGGGCTTC ATTGACTGAT AATAATGCTT TTGAGCATGT TAATATGTGC CCCTGACAGC 28908 | .......... .......... .......... .......... .......... .........C 289 TTCAAATATC AG-CAATGTA AGTTTGAG 28935 || ||||| || || | || |||||||| TT-AAATAGT AGACATTATA AGTTTGAG 316 hqPGS_C08HBa0167P18.1+_SGN-E233735+ (26693 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 20 +strand 484 n (File: SGN-E377238+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACAC Predicted gene structure (within gDNA segment 25922 to 29963): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 264 268 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 269 288 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 289 316 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E377238+ 0.893 315 0.651 C PGS_C08HBa0167P18.1+_SGN-E377238+ (26693 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAAGTGT ACCTTAGTTA TACTCTCAAG CTATTGTGGG 26988 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA.... .......... .......... .......... 263 TTTAAATAGT GATGTACACA TTCTAAAATA GGAACGATTA TCAAGATTAT AGATCCTACA 27048 .......... .......... .......... .......... .......... .......... 263 GGAAATTAAC ATGGTGATAG TTATAGATCC TAAATGCATG CATATATATA TATATATATA 27108 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TTAACAATCA TGCCTGTACA CATAGCATGC TAAGCTTCTT 27168 .......... .......... .......... .......... .......... .......... 263 CTTTTACTTT CTTTTTCCTT CTTTTTTTTT TTTTTGGGGG GGGGGGGGTG GGGGGGGGGA 27228 .......... .......... .......... .......... .......... .......... 263 GGAGGGGGAG GAGGAGGTGG GTTTAGTCTT AGTGAAATAT AGTCAAAGAA ATGTCAAGAT 27288 .......... .......... .......... .......... .......... .......... 263 TAACAAGTGA ACTCTAGAAA AGATCAACTT TGTTTTTTTG CTTAAAAGTT TAAATTGCTA 27348 .......... .......... .......... .......... .......... .......... 263 TTTCTTTTTT TATTGATGAA GCAATGGTGA TGGAGAAAAA TCCTTGAATA CAAGATGTAA 27408 ||| .......... .......... .TAATT.... .......... .......... .......... 268 CAAAAGCATC GTTGAATACA AGAATGTAAC AAAAGCAATT AACATCGTAG GAAACATGCT 27468 .......... .......... .......... .......... .......... .......... 268 TTTCTACAAT AGCACCTAAT CTTTTGTAAC AGGCATCTCA TACGTGTTCC TACTGTATAC 27528 ||| ||||| | | | .......... .......... .......... ..TTTTCTTT TACGTATCTC CA........ 288 TACCATATAA GTACAATACC TCAAAACAAA ATGTTGATCA GCTTTTATAT CCTTAGGAAA 27588 .......... .......... .......... .......... .......... .......... 288 TTACATTAAA GTACACATTC CATTTAGATA AAATTGTAAT TACTCTACAG GCCCTCAATT 27648 .......... .......... .......... .......... .......... .......... 288 TATGATTTAT ACTGTAATAA ATTTCTTGAT TCTATTACAC AACTTCCATA CCCATGAGTT 27708 .......... .......... .......... .......... .......... .......... 288 AAGAAAGCAT AAAACTGCTC AGCCTGATCT CCCTAATAGA GTCCCAATTT GGCATTTGCA 27768 .......... .......... .......... .......... .......... .......... 288 TTTGTCACTC TGACCTAGTA AAATCTGGAC CTTTAAAACT GATCATCCAT AAACAACCAG 27828 .......... .......... .......... .......... .......... .......... 288 CTAAAAGTAG GGATTTCGAT ATATAAGACG TCAAAGTCAA ATGCTCATCC CGGATGACAT 27888 .......... .......... .......... .......... .......... .......... 288 ACTATGATCA TCATAGAGTA AGCAGCTTAA GAGTTCATGT CAAGTGATAC ATTTAGACGC 27948 .......... .......... .......... .......... .......... .......... 288 AATACATCAA CAACAACCCC TCCCCCCCCC CCCCGGGCCT TAGTCCTAGT TGGCTTGGCT 28008 .......... .......... .......... .......... .......... .......... 288 GTATGACTCC TCAATATTCA TTCCTCTTCA ATTGGGCCTG TTTCATTCCA CTACTCACAA 28068 .......... .......... .......... .......... .......... .......... 288 TGTAGCCAAA TTGAAACAGT ATACTCGTAA TGCATCATTA GCTCTAAGTC AAGTCACCAC 28128 .......... .......... .......... .......... .......... .......... 288 CGAAATGTTC CGATTATGTA CCACAATTAT ATCTCCTTGT TCAAGTAGTG GATCCAATTT 28188 .......... .......... .......... .......... .......... .......... 288 CGGTGTAACT AAATTAAGTC AAATTATTCC AAATAAGAAT AGCAGTGTTG CCTAGCCATT 28248 .......... .......... .......... .......... .......... .......... 288 TTGCTTTCCA AAAAACAATG TGTTCCACTA CCTACTTTGA AAGAGGAGTT CAAGGAAGAT 28308 .......... .......... .......... .......... .......... .......... 288 TCAACCCAAA GTTTGCTAAT GAACTTCCAA ATATCAGTAC GATGAGGGCA TAATGTACCA 28368 .......... .......... .......... .......... .......... .......... 288 ATGATTTTGC TCTTCATATT TGTGTTTAAC AGTTTTGACT TCTTGTTCCC ACATACCTTA 28428 .......... .......... .......... .......... .......... .......... 288 TTCCTCTAAG TTGTATTTCC ACAACCATTT CATCAACAAA CACTTGATGT GCGCTGCTAG 28488 .......... .......... .......... .......... .......... .......... 288 ATCTTTTATA CCCAAAGTGC CTTGTAATTT TGGTTGAATA ACTTTGGATC ACTTTGTTAT 28548 .......... .......... .......... .......... .......... .......... 288 CATAACCCAG ACCGTTCCCT TCCCACAAAA AAAGATCTTT CGAATCTAGC AAGCTGCTTT 28608 .......... .......... .......... .......... .......... .......... 288 TATAGCTTGA TTAGAATAAG GAAAAAGAGA CATAAAATTA ACGGGGATGC TGTTTAAAAA 28668 .......... .......... .......... .......... .......... .......... 288 GCTACTTATG AGTGTTTATT TTCTACCAAT AGAGGGATAA TACTTTTGCC AGGAAGCCAA 28728 .......... .......... .......... .......... .......... .......... 288 CCTTTCCTGT AGCTTCTCTA ATCACCCAAT TCCAGATCCC AGAGGATTTA AATCTAGCAA 28788 .......... .......... .......... .......... .......... .......... 288 CCAGAGTAAA CCCCAAATAA GTAGTGGTGA ATGTACTTAT ACTGCAACAT ATAATTAAAT 28848 .......... .......... .......... .......... .......... .......... 288 TAGGGGCTTC ATTGACTGAT AATAATGCTT TTGAGCATGT TAATATGTGC CCCTGACAGC 28908 | .......... .......... .......... .......... .......... .........C 289 TTCAAATATC AG-CAATGTA AGTTTGAG 28935 || ||||| || || | || |||||||| TT-AAATAGT AGACATTATA AGTTTGAG 316 hqPGS_C08HBa0167P18.1+_SGN-E377238+ (26693 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 27 +strand 434 n (File: SGN-E240879+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAAT Predicted gene structure (within gDNA segment 25922 to 30063): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 264 268 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 269 288 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 289 316 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E240879+ 0.893 315 0.726 C PGS_C08HBa0167P18.1+_SGN-E240879+ (26693 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAAGTGT ACCTTAGTTA TACTCTCAAG CTATTGTGGG 26988 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA.... .......... .......... .......... 263 TTTAAATAGT GATGTACACA TTCTAAAATA GGAACGATTA TCAAGATTAT AGATCCTACA 27048 .......... .......... .......... .......... .......... .......... 263 GGAAATTAAC ATGGTGATAG TTATAGATCC TAAATGCATG CATATATATA TATATATATA 27108 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TTAACAATCA TGCCTGTACA CATAGCATGC TAAGCTTCTT 27168 .......... .......... .......... .......... .......... .......... 263 CTTTTACTTT CTTTTTCCTT CTTTTTTTTT TTTTTGGGGG GGGGGGGGTG GGGGGGGGGA 27228 .......... .......... .......... .......... .......... .......... 263 GGAGGGGGAG GAGGAGGTGG GTTTAGTCTT AGTGAAATAT AGTCAAAGAA ATGTCAAGAT 27288 .......... .......... .......... .......... .......... .......... 263 TAACAAGTGA ACTCTAGAAA AGATCAACTT TGTTTTTTTG CTTAAAAGTT TAAATTGCTA 27348 .......... .......... .......... .......... .......... .......... 263 TTTCTTTTTT TATTGATGAA GCAATGGTGA TGGAGAAAAA TCCTTGAATA CAAGATGTAA 27408 ||| .......... .......... .TAATT.... .......... .......... .......... 268 CAAAAGCATC GTTGAATACA AGAATGTAAC AAAAGCAATT AACATCGTAG GAAACATGCT 27468 .......... .......... .......... .......... .......... .......... 268 TTTCTACAAT AGCACCTAAT CTTTTGTAAC AGGCATCTCA TACGTGTTCC TACTGTATAC 27528 ||| ||||| | | | .......... .......... .......... ..TTTTCTTT TACGTATCTC CA........ 288 TACCATATAA GTACAATACC TCAAAACAAA ATGTTGATCA GCTTTTATAT CCTTAGGAAA 27588 .......... .......... .......... .......... .......... .......... 288 TTACATTAAA GTACACATTC CATTTAGATA AAATTGTAAT TACTCTACAG GCCCTCAATT 27648 .......... .......... .......... .......... .......... .......... 288 TATGATTTAT ACTGTAATAA ATTTCTTGAT TCTATTACAC AACTTCCATA CCCATGAGTT 27708 .......... .......... .......... .......... .......... .......... 288 AAGAAAGCAT AAAACTGCTC AGCCTGATCT CCCTAATAGA GTCCCAATTT GGCATTTGCA 27768 .......... .......... .......... .......... .......... .......... 288 TTTGTCACTC TGACCTAGTA AAATCTGGAC CTTTAAAACT GATCATCCAT AAACAACCAG 27828 .......... .......... .......... .......... .......... .......... 288 CTAAAAGTAG GGATTTCGAT ATATAAGACG TCAAAGTCAA ATGCTCATCC CGGATGACAT 27888 .......... .......... .......... .......... .......... .......... 288 ACTATGATCA TCATAGAGTA AGCAGCTTAA GAGTTCATGT CAAGTGATAC ATTTAGACGC 27948 .......... .......... .......... .......... .......... .......... 288 AATACATCAA CAACAACCCC TCCCCCCCCC CCCCGGGCCT TAGTCCTAGT TGGCTTGGCT 28008 .......... .......... .......... .......... .......... .......... 288 GTATGACTCC TCAATATTCA TTCCTCTTCA ATTGGGCCTG TTTCATTCCA CTACTCACAA 28068 .......... .......... .......... .......... .......... .......... 288 TGTAGCCAAA TTGAAACAGT ATACTCGTAA TGCATCATTA GCTCTAAGTC AAGTCACCAC 28128 .......... .......... .......... .......... .......... .......... 288 CGAAATGTTC CGATTATGTA CCACAATTAT ATCTCCTTGT TCAAGTAGTG GATCCAATTT 28188 .......... .......... .......... .......... .......... .......... 288 CGGTGTAACT AAATTAAGTC AAATTATTCC AAATAAGAAT AGCAGTGTTG CCTAGCCATT 28248 .......... .......... .......... .......... .......... .......... 288 TTGCTTTCCA AAAAACAATG TGTTCCACTA CCTACTTTGA AAGAGGAGTT CAAGGAAGAT 28308 .......... .......... .......... .......... .......... .......... 288 TCAACCCAAA GTTTGCTAAT GAACTTCCAA ATATCAGTAC GATGAGGGCA TAATGTACCA 28368 .......... .......... .......... .......... .......... .......... 288 ATGATTTTGC TCTTCATATT TGTGTTTAAC AGTTTTGACT TCTTGTTCCC ACATACCTTA 28428 .......... .......... .......... .......... .......... .......... 288 TTCCTCTAAG TTGTATTTCC ACAACCATTT CATCAACAAA CACTTGATGT GCGCTGCTAG 28488 .......... .......... .......... .......... .......... .......... 288 ATCTTTTATA CCCAAAGTGC CTTGTAATTT TGGTTGAATA ACTTTGGATC ACTTTGTTAT 28548 .......... .......... .......... .......... .......... .......... 288 CATAACCCAG ACCGTTCCCT TCCCACAAAA AAAGATCTTT CGAATCTAGC AAGCTGCTTT 28608 .......... .......... .......... .......... .......... .......... 288 TATAGCTTGA TTAGAATAAG GAAAAAGAGA CATAAAATTA ACGGGGATGC TGTTTAAAAA 28668 .......... .......... .......... .......... .......... .......... 288 GCTACTTATG AGTGTTTATT TTCTACCAAT AGAGGGATAA TACTTTTGCC AGGAAGCCAA 28728 .......... .......... .......... .......... .......... .......... 288 CCTTTCCTGT AGCTTCTCTA ATCACCCAAT TCCAGATCCC AGAGGATTTA AATCTAGCAA 28788 .......... .......... .......... .......... .......... .......... 288 CCAGAGTAAA CCCCAAATAA GTAGTGGTGA ATGTACTTAT ACTGCAACAT ATAATTAAAT 28848 .......... .......... .......... .......... .......... .......... 288 TAGGGGCTTC ATTGACTGAT AATAATGCTT TTGAGCATGT TAATATGTGC CCCTGACAGC 28908 | .......... .......... .......... .......... .......... .........C 289 TTCAAATATC AG-CAATGTA AGTTTGAG 28935 || ||||| || || | || |||||||| TT-AAATAGT AGACATTATA AGTTTGAG 316 hqPGS_C08HBa0167P18.1+_SGN-E240879+ (26693 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 21 +strand 666 n (File: SGN-E237992+) 1 ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 61 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTAAAAAAAA AGCACCCCTA CCCCAGCTTT 121 TAACTTTTGG CTTAAAATAA GTTTTTTTTT TTAACTTAAA ATAAGTTATT TTGAGTATTG 181 CCAAACAACT AAATAAGTCA AAAATCAGTT TTTAAGTCAG TTTGATCAGC TTTTAAGCTG 241 AACTAAACAA GCTCTTAGAC AATAATTTTT TCTTTTACGT ATCTCCACTT AAATAGTAGA 301 CATTATAAGT TTGAGGCAGT TCTCAACCAT GTAACCTAAG TCACAAATTT ATGAGTTTCC 361 AATTTATGCA CTTTGGTTAA AAAAATAACT ATTCATATAA ATTTCTTTTT TTATTATTTT 421 AATCGAAAAA AATCATCTAG AGTCGATTGT TAGAAATAGT TGCAACTTGC AACTATGTAA 481 CACAGAGATA ATAATTTTGT CTTTTTACGT ATCTCCACTT AAATACCAGA CATCACTAAC 541 TTAAGTCACA AACCCCTTGA CCTTCCCAAT TATATTTAAG CACTAGAAAA CTTATATATA 601 AAAAATCGAA TTTAACGCTT AATATTTATC AACTAACACC TAATTGTCTT TTGTTTCATT 661 TGGAAA Predicted gene structure (within gDNA segment 25932 to 31793): Exon 1 26694 26954 ( 261 n); cDNA 1 262 ( 262 n); score: 0.893 Intron 1 26955 27369 ( 415 n); Pd: 0.000 (s: 0.92), Pa: 0.995 (s: 0) Exon 2 27370 27374 ( 5 n); cDNA 263 267 ( 5 n); score: 0.600 Intron 2 27375 27500 ( 126 n); Pd: 0.000 (s: 0), Pa: 0.572 (s: 0) Exon 3 27501 27520 ( 20 n); cDNA 268 287 ( 20 n); score: 0.550 Intron 3 27521 28907 (1387 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 4 28908 28935 ( 28 n); cDNA 288 315 ( 28 n); score: 0.732 MATCH C08HBa0167P18.1+ SGN-E237992+ 0.893 314 0.471 C PGS_C08HBa0167P18.1+_SGN-E237992+ (26694 26954,27370 27374,27501 27520,28908 28935) Alignment (genomic DNA sequence = upper lines): ATGTTAGGGT TATGTGGGTA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 26753 ||||||| || ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 60 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTAAAAAAAA AAAAGCACCC CTACCCCATC 26813 |||||||||| |||||||||| |||||||||| || ||||| |||||||||| |||||||| | AAATGTGGTC AACTTAAAAC AGCTTATAAG CT---AAAAA AAAAGCACCC CTACCCCAGC 117 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTGAACCT AAAATAAGTT ATTTTGAGTA 26870 |||||||||| || ||||||| |||| ||| |||| ||| | |||||||||| |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 177 TTGTAAAACA GCTAAATAAG TC-AAAACCA GCTTTTAAGT CAGTTTGATC AGCTTTTAAG 26929 ||| ||||| ||||||||| || |||| || | |||||||| |||||||||| |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 237 CTGAGCCAAA CAGGCTCTTA GAGAAGTGTA CCTTAGTTAT ACTCTCAAGC TATTGTGGGT 26989 |||| | ||| || ||||||| || || CTGAACTAAA CAAGCTCTTA GACAA..... .......... .......... .......... 262 TTAAATAGTG ATGTACACAT TCTAAAATAG GAACGATTAT CAAGATTATA GATCCTACAG 27049 .......... .......... .......... .......... .......... .......... 262 GAAATTAACA TGGTGATAGT TATAGATCCT AAATGCATGC ATATATATAT ATATATATAT 27109 .......... .......... .......... .......... .......... .......... 262 ATATATATAT ATATATATAT TAACAATCAT GCCTGTACAC ATAGCATGCT AAGCTTCTTC 27169 .......... .......... .......... .......... .......... .......... 262 TTTTACTTTC TTTTTCCTTC TTTTTTTTTT TTTTGGGGGG GGGGGGGTGG GGGGGGGGAG 27229 .......... .......... .......... .......... .......... .......... 262 GAGGGGGAGG AGGAGGTGGG TTTAGTCTTA GTGAAATATA GTCAAAGAAA TGTCAAGATT 27289 .......... .......... .......... .......... .......... .......... 262 AACAAGTGAA CTCTAGAAAA GATCAACTTT GTTTTTTTGC TTAAAAGTTT AAATTGCTAT 27349 .......... .......... .......... .......... .......... .......... 262 TTCTTTTTTT ATTGATGAAG CAATGGTGAT GGAGAAAAAT CCTTGAATAC AAGATGTAAC 27409 ||| .......... .......... TAATT..... .......... .......... .......... 267 AAAAGCATCG TTGAATACAA GAATGTAACA AAAGCAATTA ACATCGTAGG AAACATGCTT 27469 .......... .......... .......... .......... .......... .......... 267 TTCTACAATA GCACCTAATC TTTTGTAACA GGCATCTCAT ACGTGTTCCT ACTGTATACT 27529 ||| | |||| | | | .......... .......... .......... .TTTTCTTTT ACGTATCTCC A......... 287 ACCATATAAG TACAATACCT CAAAACAAAA TGTTGATCAG CTTTTATATC CTTAGGAAAT 27589 .......... .......... .......... .......... .......... .......... 287 TACATTAAAG TACACATTCC ATTTAGATAA AATTGTAATT ACTCTACAGG CCCTCAATTT 27649 .......... .......... .......... .......... .......... .......... 287 ATGATTTATA CTGTAATAAA TTTCTTGATT CTATTACACA ACTTCCATAC CCATGAGTTA 27709 .......... .......... .......... .......... .......... .......... 287 AGAAAGCATA AAACTGCTCA GCCTGATCTC CCTAATAGAG TCCCAATTTG GCATTTGCAT 27769 .......... .......... .......... .......... .......... .......... 287 TTGTCACTCT GACCTAGTAA AATCTGGACC TTTAAAACTG ATCATCCATA AACAACCAGC 27829 .......... .......... .......... .......... .......... .......... 287 TAAAAGTAGG GATTTCGATA TATAAGACGT CAAAGTCAAA TGCTCATCCC GGATGACATA 27889 .......... .......... .......... .......... .......... .......... 287 CTATGATCAT CATAGAGTAA GCAGCTTAAG AGTTCATGTC AAGTGATACA TTTAGACGCA 27949 .......... .......... .......... .......... .......... .......... 287 ATACATCAAC AACAACCCCT CCCCCCCCCC CCCGGGCCTT AGTCCTAGTT GGCTTGGCTG 28009 .......... .......... .......... .......... .......... .......... 287 TATGACTCCT CAATATTCAT TCCTCTTCAA TTGGGCCTGT TTCATTCCAC TACTCACAAT 28069 .......... .......... .......... .......... .......... .......... 287 GTAGCCAAAT TGAAACAGTA TACTCGTAAT GCATCATTAG CTCTAAGTCA AGTCACCACC 28129 .......... .......... .......... .......... .......... .......... 287 GAAATGTTCC GATTATGTAC CACAATTATA TCTCCTTGTT CAAGTAGTGG ATCCAATTTC 28189 .......... .......... .......... .......... .......... .......... 287 GGTGTAACTA AATTAAGTCA AATTATTCCA AATAAGAATA GCAGTGTTGC CTAGCCATTT 28249 .......... .......... .......... .......... .......... .......... 287 TGCTTTCCAA AAAACAATGT GTTCCACTAC CTACTTTGAA AGAGGAGTTC AAGGAAGATT 28309 .......... .......... .......... .......... .......... .......... 287 CAACCCAAAG TTTGCTAATG AACTTCCAAA TATCAGTACG ATGAGGGCAT AATGTACCAA 28369 .......... .......... .......... .......... .......... .......... 287 TGATTTTGCT CTTCATATTT GTGTTTAACA GTTTTGACTT CTTGTTCCCA CATACCTTAT 28429 .......... .......... .......... .......... .......... .......... 287 TCCTCTAAGT TGTATTTCCA CAACCATTTC ATCAACAAAC ACTTGATGTG CGCTGCTAGA 28489 .......... .......... .......... .......... .......... .......... 287 TCTTTTATAC CCAAAGTGCC TTGTAATTTT GGTTGAATAA CTTTGGATCA CTTTGTTATC 28549 .......... .......... .......... .......... .......... .......... 287 ATAACCCAGA CCGTTCCCTT CCCACAAAAA AAGATCTTTC GAATCTAGCA AGCTGCTTTT 28609 .......... .......... .......... .......... .......... .......... 287 ATAGCTTGAT TAGAATAAGG AAAAAGAGAC ATAAAATTAA CGGGGATGCT GTTTAAAAAG 28669 .......... .......... .......... .......... .......... .......... 287 CTACTTATGA GTGTTTATTT TCTACCAATA GAGGGATAAT ACTTTTGCCA GGAAGCCAAC 28729 .......... .......... .......... .......... .......... .......... 287 CTTTCCTGTA GCTTCTCTAA TCACCCAATT CCAGATCCCA GAGGATTTAA ATCTAGCAAC 28789 .......... .......... .......... .......... .......... .......... 287 CAGAGTAAAC CCCAAATAAG TAGTGGTGAA TGTACTTATA CTGCAACATA TAATTAAATT 28849 .......... .......... .......... .......... .......... .......... 287 AGGGGCTTCA TTGACTGATA ATAATGCTTT TGAGCATGTT AATATGTGCC CCTGACAGCT 28909 || .......... .......... .......... .......... .......... ........CT 289 TCAAATATCA G-CAATGTAA GTTTGAG 28935 | ||||| | | || | ||| ||||||| T-AAATAGTA GACATTATAA GTTTGAG 315 hqPGS_C08HBa0167P18.1+_SGN-E237992+ (26694 26954,27370 27374,27501 27520,28908 28935) ******************************************************************************** EST sequence 1 +strand 506 n (File: SGN-E578392+) 1 CTCAGCTTAA ACCAGTTTTT TTCGATTCGA TGTTCGATAT ATATAACGAA GTCAAATCTC 61 ATATATTATT AAAGACATAA ATATAGATAA AGGTGACAGA GTTAGTTTAT CAACCTAACA 121 TGTCTAATCC ACCTAAGTTT GGGAAATTAA AGTTATTGAC CTACTCATTT ATTAGTTTAC 181 TGGGTAAGAA ATTAAAAATA ATATATAGTC TAAATTAATT TATGAGAATT TTTGTCAGAA 241 TATTTTCTTA TTTAGGGCCC GTTTGGATGG GCTTAATAAA AACAGCTTTA AAAAAGTACT 301 TTTGAAAGTG CTGAAACTTA TTTCTAAAAT AAACAGTTAT GCATTTGGAT AAAAGTGCTG 361 AAGTTGTTAT GCCAAACGTG AAAAGCGAAA AATGGAAGAA AGAGATGTTA GGGTTATATG 421 TGTAACTTGG AAATTGTATA AAAATATTAA GGGCAAAAAG ATAAAGATGT GATCAACTTA 481 AAACAGCTTA TAAGCTAAAA AAAAAA Predicted gene structure (within gDNA segment 23459 to 27405): Exon 1 26539 26795 ( 257 n); cDNA 249 506 ( 258 n); score: 0.932 MATCH C08HBa0167P18.1+ SGN-E578392+ 0.932 257 0.508 C PGS_C08HBa0167P18.1+_SGN-E578392+ (26539 26795) Alignment (genomic DNA sequence = upper lines): TATTTAGGGC CCGTTTGGAT -GGCTTAATA AAAGCAGCTT TAAAAAAGTA TTTTTGAAAG 26597 |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| ||||||||| TATTTAGGGC CCGTTTGGAT GGGCTTAATA AAAACAGCTT TAAAAAAGTA CTTTTGAAAG 308 TGCTGAAACT TATTTTTAAA ATAAACAGTT TTGCGTTTGG ATAAAAGTGC TGAAATTGCT 26657 |||||||||| ||||| |||| |||||||||| ||| ||||| |||||||||| |||| ||| | TGCTGAAACT TATTTCTAAA ATAAACAGTT ATGCATTTGG ATAAAAGTGC TGAAGTTGTT 368 ATGTCAAACG TGAAAAGGGA AAAATGGAAG AAAGAGATGT TAGGGTTATG TGGGTAATTT 26717 ||| |||||| ||||||| || |||||||||| |||||||||| ||||||||| || |||| || ATGCCAAACG TGAAAAGCGA AAAATGGAAG AAAGAGATGT TAGGGTTATA TGTGTAACTT 428 GGAGATTGTA TAAAAATATT AAGGGCAAAA AGATAAAAAT GTGGTCAACT TAAAACAGCT 26777 ||| |||||| |||||||||| |||||||||| ||||||| || ||| |||||| |||||||||| GGAAATTGTA TAAAAATATT AAGGGCAAAA AGATAAAGAT GTGATCAACT TAAAACAGCT 488 TATAAGCTAA AAAAAAAA 26795 |||||||||| |||||||| TATAAGCTAA AAAAAAAA 506 hqPGS_C08HBa0167P18.1+_SGN-E578392+ (26539 26795) ******************************************************************************** EST sequence 36 -strand 540 n (File: SGN-E253695-) 1 TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG CCAAACGTGA 61 AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 121 AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 181 AAAAAAGCAC ACTTTTGGCT TAAAATAAGT TTTTTTAACT TAAAATAAGC TATTTTGAGT 241 ATTGCCAAAC ATTTAAATAA GTCAAAAACC AGCTTTTAAG TCAGTTTGAC CAGCTTTTAA 301 GCTGAGCCAA ACAGGCTCTA AAGCTCGAGA TAGTGAAACT CTAAGATGAT CAATTAAGGA 361 ACTGGTGTTG GTTGTTTTTA GTAGATCTCT TACTTGTTCA AATGCAGGCA TGAGGAAGAG 421 GAGTCCAGTT TGAAAGTAGT CAATTTGAAG CTCAAGAATG TCCCATGGTG TCAACTCAAT 481 AATCTTACAA TTATCTGTAT GGTGCTGACT TTTTCCCTCA GCTTTAACCG TCCATTTTGA Predicted gene structure (within gDNA segment 25839 to 29757): Exon 1 26611 26949 ( 339 n); cDNA 1 321 ( 321 n); score: 0.869 Intron 1 26950 27369 ( 420 n); Pd: 0.000 (s: 0.96), Pa: 0.995 (s: 0) Exon 2 27370 27386 ( 17 n); cDNA 322 338 ( 17 n); score: 0.588 Intron 2 27387 28907 (1521 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 3 28908 28924 ( 17 n); cDNA 339 354 ( 16 n); score: 0.706 MATCH C08HBa0167P18.1+ SGN-E253695- 0.869 373 0.691 C PGS_C08HBa0167P18.1+_SGN-E253695- (26611 26949,27370 27386,28908 28924) Alignment (genomic DNA sequence = upper lines): TTTTAAAATA AACAGTTTTG CGTTTGGATA AAAGTGCTGA AATTGCTATG TCAAACGTGA 26670 |||||||||| | || || || |||||||||| |||||| ||| | ||| |||| ||||||||| TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG CCAAACGTGA 60 AAAGGGAAAA ATGGAAGAAA GAGATGTTAG GGTTATGTGG GTAATTTGGA GATTGTATAA 26730 |||||||||| || ||||||| |||| ||||| ||||| ||| |||||||||| |||||||||| AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 120 AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 26790 |||||||||| || ||||| | ||||||| || |||||||||| |||||||||| ||||| |||| AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCT-AAAA 179 AAAAAAAGCA CCCCTACCCC ATCTTTTAAC TTTTGACTTA AAATAAGTTT TTTTGAACCT 26850 |||||||| | | | || ||||| |||| |||||||||| |||| ||| | AAAAAAAG-- ---------C A-C-----AC TTTTGGCTTA AAATAAGTTT TTTT-AACTT 221 AAAATAAGTT ATTTTGAGTA TTGTAAAACA GCTAAATAAG TC-AAAACCA GCTTTTAAGT 26909 |||||||| | |||||||||| ||| ||||| |||||||| || ||||||| |||||||||| AAAATAAGCT ATTTTGAGTA TTGCCAAACA TTTAAATAAG TCAAAAACCA GCTTTTAAGT 281 CAGTTTGATC AGCTTTTAAG CTGAGCCAAA CAGGCTCTTA GAGAAGTGTA CCTTAGTTAT 26969 |||||||| | |||||||||| |||||||||| |||||||| | CAGTTTGACC AGCTTTTAAG CTGAGCCAAA CAGGCTCTAA .......... .......... 321 ACTCTCAAGC TATTGTGGGT TTAAATAGTG ATGTACACAT TCTAAAATAG GAACGATTAT 27029 .......... .......... .......... .......... .......... .......... 321 CAAGATTATA GATCCTACAG GAAATTAACA TGGTGATAGT TATAGATCCT AAATGCATGC 27089 .......... .......... .......... .......... .......... .......... 321 ATATATATAT ATATATATAT ATATATATAT ATATATATAT TAACAATCAT GCCTGTACAC 27149 .......... .......... .......... .......... .......... .......... 321 ATAGCATGCT AAGCTTCTTC TTTTACTTTC TTTTTCCTTC TTTTTTTTTT TTTTGGGGGG 27209 .......... .......... .......... .......... .......... .......... 321 GGGGGGGTGG GGGGGGGGAG GAGGGGGAGG AGGAGGTGGG TTTAGTCTTA GTGAAATATA 27269 .......... .......... .......... .......... .......... .......... 321 GTCAAAGAAA TGTCAAGATT AACAAGTGAA CTCTAGAAAA GATCAACTTT GTTTTTTTGC 27329 .......... .......... .......... .......... .......... .......... 321 TTAAAAGTTT AAATTGCTAT TTCTTTTTTT ATTGATGAAG CAATGGTGAT GGAGAAAAAT 27389 | | ||| | |||| .......... .......... .......... .......... AGCTCGAGAT AGTGAAA... 338 CCTTGAATAC AAGATGTAAC AAAAGCATCG TTGAATACAA GAATGTAACA AAAGCAATTA 27449 .......... .......... .......... .......... .......... .......... 338 ACATCGTAGG AAACATGCTT TTCTACAATA GCACCTAATC TTTTGTAACA GGCATCTCAT 27509 .......... .......... .......... .......... .......... .......... 338 ACGTGTTCCT ACTGTATACT ACCATATAAG TACAATACCT CAAAACAAAA TGTTGATCAG 27569 .......... .......... .......... .......... .......... .......... 338 CTTTTATATC CTTAGGAAAT TACATTAAAG TACACATTCC ATTTAGATAA AATTGTAATT 27629 .......... .......... .......... .......... .......... .......... 338 ACTCTACAGG CCCTCAATTT ATGATTTATA CTGTAATAAA TTTCTTGATT CTATTACACA 27689 .......... .......... .......... .......... .......... .......... 338 ACTTCCATAC CCATGAGTTA AGAAAGCATA AAACTGCTCA GCCTGATCTC CCTAATAGAG 27749 .......... .......... .......... .......... .......... .......... 338 TCCCAATTTG GCATTTGCAT TTGTCACTCT GACCTAGTAA AATCTGGACC TTTAAAACTG 27809 .......... .......... .......... .......... .......... .......... 338 ATCATCCATA AACAACCAGC TAAAAGTAGG GATTTCGATA TATAAGACGT CAAAGTCAAA 27869 .......... .......... .......... .......... .......... .......... 338 TGCTCATCCC GGATGACATA CTATGATCAT CATAGAGTAA GCAGCTTAAG AGTTCATGTC 27929 .......... .......... .......... .......... .......... .......... 338 AAGTGATACA TTTAGACGCA ATACATCAAC AACAACCCCT CCCCCCCCCC CCCGGGCCTT 27989 .......... .......... .......... .......... .......... .......... 338 AGTCCTAGTT GGCTTGGCTG TATGACTCCT CAATATTCAT TCCTCTTCAA TTGGGCCTGT 28049 .......... .......... .......... .......... .......... .......... 338 TTCATTCCAC TACTCACAAT GTAGCCAAAT TGAAACAGTA TACTCGTAAT GCATCATTAG 28109 .......... .......... .......... .......... .......... .......... 338 CTCTAAGTCA AGTCACCACC GAAATGTTCC GATTATGTAC CACAATTATA TCTCCTTGTT 28169 .......... .......... .......... .......... .......... .......... 338 CAAGTAGTGG ATCCAATTTC GGTGTAACTA AATTAAGTCA AATTATTCCA AATAAGAATA 28229 .......... .......... .......... .......... .......... .......... 338 GCAGTGTTGC CTAGCCATTT TGCTTTCCAA AAAACAATGT GTTCCACTAC CTACTTTGAA 28289 .......... .......... .......... .......... .......... .......... 338 AGAGGAGTTC AAGGAAGATT CAACCCAAAG TTTGCTAATG AACTTCCAAA TATCAGTACG 28349 .......... .......... .......... .......... .......... .......... 338 ATGAGGGCAT AATGTACCAA TGATTTTGCT CTTCATATTT GTGTTTAACA GTTTTGACTT 28409 .......... .......... .......... .......... .......... .......... 338 CTTGTTCCCA CATACCTTAT TCCTCTAAGT TGTATTTCCA CAACCATTTC ATCAACAAAC 28469 .......... .......... .......... .......... .......... .......... 338 ACTTGATGTG CGCTGCTAGA TCTTTTATAC CCAAAGTGCC TTGTAATTTT GGTTGAATAA 28529 .......... .......... .......... .......... .......... .......... 338 CTTTGGATCA CTTTGTTATC ATAACCCAGA CCGTTCCCTT CCCACAAAAA AAGATCTTTC 28589 .......... .......... .......... .......... .......... .......... 338 GAATCTAGCA AGCTGCTTTT ATAGCTTGAT TAGAATAAGG AAAAAGAGAC ATAAAATTAA 28649 .......... .......... .......... .......... .......... .......... 338 CGGGGATGCT GTTTAAAAAG CTACTTATGA GTGTTTATTT TCTACCAATA GAGGGATAAT 28709 .......... .......... .......... .......... .......... .......... 338 ACTTTTGCCA GGAAGCCAAC CTTTCCTGTA GCTTCTCTAA TCACCCAATT CCAGATCCCA 28769 .......... .......... .......... .......... .......... .......... 338 GAGGATTTAA ATCTAGCAAC CAGAGTAAAC CCCAAATAAG TAGTGGTGAA TGTACTTATA 28829 .......... .......... .......... .......... .......... .......... 338 CTGCAACATA TAATTAAATT AGGGGCTTCA TTGACTGATA ATAATGCTTT TGAGCATGTT 28889 .......... .......... .......... .......... .......... .......... 338 AATATGTGCC CCTGACAGCT TCAAATATCA GCAAT 28924 | || || || | |||| .......... ........C- TCTAAGATGA TCAAT 354 hqPGS_C08HBa0167P18.1+_SGN-E253695- (26611 26949) ******************************************************************************** EST sequence 44 -strand 618 n (File: SGN-E249253-) 1 GAAAAGGGAA AAATAGAAGA AAGAGAAGTT AGTGTTATAT GGGTAATTTG GAGATTGTAT 61 AAAAATATTA AGGGAAAAAA CATAAAAATA TGGTCAACTT AAAACAGCTT ATAAGCTAAA 121 AAAAAAAGGC ACACTTTTGG CTTAAAATAA GTTTTTTTAA CTTAAAATAA GCTATTTTGA 181 GTATTGCCAA ACATTTAAAT AAGTCAAAAA CCAGCTTTTA AGTCAGTTTG ACCAGCTTTT 241 AAGCTGAGCC AAACAGGCTC TAAAGCTCGA GATAGTGAAA CTCTAAGATG ATCAATTAAG 301 GAACTGGTGT TGGTTGTTTT TAGTAGATCT CTTACTTGTT CAAATGCAGG CATGAGGAAG 361 AGGAGTCCAG TTTGAAAGTA GTCAATTTGA AGCTCAAGAA TGTCCCATGG TGTCAACTCA 421 ATAATCTTAC AATTATCTGT ATGGTGCTGA CTTTTTCCCT CAGCTTTAAC CGTCCATTTT 481 GAAATGATGG ATACCTTGGA AGCCATAGCT TTCAATCACC TCTGTATTGG GTAAATCTGA 541 AGTTAAATCA GTGTGCTCAG CGGCGGAACA GCTTAATAAC CGGAAAAGTT GCCGGAAACG 601 GGACTTGAAC TGGTAACC Predicted gene structure (within gDNA segment 25708 to 31117): Exon 1 26669 26949 ( 281 n); cDNA 1 263 ( 263 n); score: 0.863 Intron 1 26950 27369 ( 420 n); Pd: 0.000 (s: 0.96), Pa: 0.995 (s: 0) Exon 2 27370 27386 ( 17 n); cDNA 264 280 ( 17 n); score: 0.588 Intron 2 27387 28907 (1521 n); Pd: 0.000 (s: 0), Pa: 0.793 (s: 0) Exon 3 28908 28924 ( 17 n); cDNA 281 296 ( 16 n); score: 0.706 MATCH C08HBa0167P18.1+ SGN-E249253- 0.863 315 0.510 C PGS_C08HBa0167P18.1+_SGN-E249253- (26669 26949,27370 27386,28908 28924) Alignment (genomic DNA sequence = upper lines): GAAAAGGGAA AAATGGAAGA AAGAGATGTT AGGGTTATGT GGGTAATTTG GAGATTGTAT 26728 |||||||||| |||| ||||| |||||| ||| || ||||| | |||||||||| |||||||||| GAAAAGGGAA AAATAGAAGA AAGAGAAGTT AGTGTTATAT GGGTAATTTG GAGATTGTAT 60 AAAAATATTA AGGGCAAAAA GATAAAAATG TGGTCAACTT AAAACAGCTT ATAAGCTAAA 26788 |||||||||| |||| ||||| |||||||| |||||||||| |||||||||| ||||||| | AAAAATATTA AGGGAAAAAA CATAAAAATA TGGTCAACTT AAAACAGCTT ATAAGCT--A 118 AAAAAAAAAG CACCCCTACC CCATCTTTTA ACTTTTGACT TAAAATAAGT TTTTTTGAAC 26848 |||||||||| || | | |||||| || |||||||||| |||||| ||| AAAAAAAAAG ---------- GCA-C----A -CTTTTGGCT TAAAATAAGT TTTTTT-AAC 161 CTAAAATAAG TTATTTTGAG TATTGTAAAA CAGCTAAATA AGTC-AAAAC CAGCTTTTAA 26907 ||||||||| ||||||||| ||||| ||| || |||||| |||| ||||| |||||||||| TTAAAATAAG CTATTTTGAG TATTGCCAAA CATTTAAATA AGTCAAAAAC CAGCTTTTAA 221 GTCAGTTTGA TCAGCTTTTA AGCTGAGCCA AACAGGCTCT TAGAGAAGTG TACCTTAGTT 26967 |||||||||| ||||||||| |||||||||| |||||||||| | GTCAGTTTGA CCAGCTTTTA AGCTGAGCCA AACAGGCTCT AA........ .......... 263 ATACTCTCAA GCTATTGTGG GTTTAAATAG TGATGTACAC ATTCTAAAAT AGGAACGATT 27027 .......... .......... .......... .......... .......... .......... 263 ATCAAGATTA TAGATCCTAC AGGAAATTAA CATGGTGATA GTTATAGATC CTAAATGCAT 27087 .......... .......... .......... .......... .......... .......... 263 GCATATATAT ATATATATAT ATATATATAT ATATATATAT ATTAACAATC ATGCCTGTAC 27147 .......... .......... .......... .......... .......... .......... 263 ACATAGCATG CTAAGCTTCT TCTTTTACTT TCTTTTTCCT TCTTTTTTTT TTTTTTGGGG 27207 .......... .......... .......... .......... .......... .......... 263 GGGGGGGGGT GGGGGGGGGG AGGAGGGGGA GGAGGAGGTG GGTTTAGTCT TAGTGAAATA 27267 .......... .......... .......... .......... .......... .......... 263 TAGTCAAAGA AATGTCAAGA TTAACAAGTG AACTCTAGAA AAGATCAACT TTGTTTTTTT 27327 .......... .......... .......... .......... .......... .......... 263 GCTTAAAAGT TTAAATTGCT ATTTCTTTTT TTATTGATGA AGCAATGGTG ATGGAGAAAA 27387 | | | || | |||| .......... .......... .......... .......... ..AGCTCGAG ATAGTGAAA. 280 ATCCTTGAAT ACAAGATGTA ACAAAAGCAT CGTTGAATAC AAGAATGTAA CAAAAGCAAT 27447 .......... .......... .......... .......... .......... .......... 280 TAACATCGTA GGAAACATGC TTTTCTACAA TAGCACCTAA TCTTTTGTAA CAGGCATCTC 27507 .......... .......... .......... .......... .......... .......... 280 ATACGTGTTC CTACTGTATA CTACCATATA AGTACAATAC CTCAAAACAA AATGTTGATC 27567 .......... .......... .......... .......... .......... .......... 280 AGCTTTTATA TCCTTAGGAA ATTACATTAA AGTACACATT CCATTTAGAT AAAATTGTAA 27627 .......... .......... .......... .......... .......... .......... 280 TTACTCTACA GGCCCTCAAT TTATGATTTA TACTGTAATA AATTTCTTGA TTCTATTACA 27687 .......... .......... .......... .......... .......... .......... 280 CAACTTCCAT ACCCATGAGT TAAGAAAGCA TAAAACTGCT CAGCCTGATC TCCCTAATAG 27747 .......... .......... .......... .......... .......... .......... 280 AGTCCCAATT TGGCATTTGC ATTTGTCACT CTGACCTAGT AAAATCTGGA CCTTTAAAAC 27807 .......... .......... .......... .......... .......... .......... 280 TGATCATCCA TAAACAACCA GCTAAAAGTA GGGATTTCGA TATATAAGAC GTCAAAGTCA 27867 .......... .......... .......... .......... .......... .......... 280 AATGCTCATC CCGGATGACA TACTATGATC ATCATAGAGT AAGCAGCTTA AGAGTTCATG 27927 .......... .......... .......... .......... .......... .......... 280 TCAAGTGATA CATTTAGACG CAATACATCA ACAACAACCC CTCCCCCCCC CCCCCGGGCC 27987 .......... .......... .......... .......... .......... .......... 280 TTAGTCCTAG TTGGCTTGGC TGTATGACTC CTCAATATTC ATTCCTCTTC AATTGGGCCT 28047 .......... .......... .......... .......... .......... .......... 280 GTTTCATTCC ACTACTCACA ATGTAGCCAA ATTGAAACAG TATACTCGTA ATGCATCATT 28107 .......... .......... .......... .......... .......... .......... 280 AGCTCTAAGT CAAGTCACCA CCGAAATGTT CCGATTATGT ACCACAATTA TATCTCCTTG 28167 .......... .......... .......... .......... .......... .......... 280 TTCAAGTAGT GGATCCAATT TCGGTGTAAC TAAATTAAGT CAAATTATTC CAAATAAGAA 28227 .......... .......... .......... .......... .......... .......... 280 TAGCAGTGTT GCCTAGCCAT TTTGCTTTCC AAAAAACAAT GTGTTCCACT ACCTACTTTG 28287 .......... .......... .......... .......... .......... .......... 280 AAAGAGGAGT TCAAGGAAGA TTCAACCCAA AGTTTGCTAA TGAACTTCCA AATATCAGTA 28347 .......... .......... .......... .......... .......... .......... 280 CGATGAGGGC ATAATGTACC AATGATTTTG CTCTTCATAT TTGTGTTTAA CAGTTTTGAC 28407 .......... .......... .......... .......... .......... .......... 280 TTCTTGTTCC CACATACCTT ATTCCTCTAA GTTGTATTTC CACAACCATT TCATCAACAA 28467 .......... .......... .......... .......... .......... .......... 280 ACACTTGATG TGCGCTGCTA GATCTTTTAT ACCCAAAGTG CCTTGTAATT TTGGTTGAAT 28527 .......... .......... .......... .......... .......... .......... 280 AACTTTGGAT CACTTTGTTA TCATAACCCA GACCGTTCCC TTCCCACAAA AAAAGATCTT 28587 .......... .......... .......... .......... .......... .......... 280 TCGAATCTAG CAAGCTGCTT TTATAGCTTG ATTAGAATAA GGAAAAAGAG ACATAAAATT 28647 .......... .......... .......... .......... .......... .......... 280 AACGGGGATG CTGTTTAAAA AGCTACTTAT GAGTGTTTAT TTTCTACCAA TAGAGGGATA 28707 .......... .......... .......... .......... .......... .......... 280 ATACTTTTGC CAGGAAGCCA ACCTTTCCTG TAGCTTCTCT AATCACCCAA TTCCAGATCC 28767 .......... .......... .......... .......... .......... .......... 280 CAGAGGATTT AAATCTAGCA ACCAGAGTAA ACCCCAAATA AGTAGTGGTG AATGTACTTA 28827 .......... .......... .......... .......... .......... .......... 280 TACTGCAACA TATAATTAAA TTAGGGGCTT CATTGACTGA TAATAATGCT TTTGAGCATG 28887 .......... .......... .......... .......... .......... .......... 280 TTAATATGTG CCCCTGACAG CTTCAAATAT CAGCAAT 28924 | || || || | |||| .......... .......... C-TCTAAGAT GATCAAT 296 hqPGS_C08HBa0167P18.1+_SGN-E249253- (26669 26949) ******************************************************************************** EST sequence 18 +strand 310 n (File: SGN-E233594+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG Predicted gene structure (within gDNA segment 25922 to 28223): Exon 1 26693 26954 ( 262 n); cDNA 1 263 ( 263 n); score: 0.893 MATCH C08HBa0167P18.1+ SGN-E233594+ 0.893 262 0.845 C PGS_C08HBa0167P18.1+_SGN-E233594+ (26693 26954) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATGTGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 26752 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAAGCACC CCTACCCCAT 26812 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT---AAAA AAAAAGCACC CCTACCCCAG 117 CTTTTAACTT TTGACTTAAA ATAAG---TT TTTTTGAACC TAAAATAAGT TATTTTGAGT 26869 |||||||||| ||| |||||| ||||| || ||||| ||| |||||||||| |||||||||| CTTTTAACTT TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT 177 ATTGTAAAAC AGCTAAATAA GTC-AAAACC AGCTTTTAAG TCAGTTTGAT CAGCTTTTAA 26928 |||| |||| | |||||||| ||| |||| | || ||||||| |||||||||| |||||||||| ATTGCCAAAC AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA 237 GCTGAGCCAA ACAGGCTCTT AGAGAA 26954 ||||| | || ||| |||||| ||| || GCTGAACTAA ACAAGCTCTT AGACAA 263 hqPGS_C08HBa0167P18.1+_SGN-E233594+ (26693 26954) ******************************************************************************** EST sequence 17 +strand 662 n (File: SGN-E376754+) 1 TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 61 GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 121 ACAGGCTCTA AGAGGATCAA AGAAAGTACA CAAACTTAAA GAAAATAAGT AGAGATCACA 181 CCACTCATAC AATAAAACAT TACATTCAAT GAAGGTTCAA TACATCGAGA TGGTAAGACT 241 AACATTATAC TAGACAAGAG CCTACCCAAT GAATTATTTT TGGATTTTTT CACATTTTTG 301 ACAAGTCTAA ACTTCAAATG TAACAAGAGG ATAATGGAAT TACTTGGCCA TCATGACCTT 361 AACAAACTCC TCATAGTTGA TTTGTCCATC ACCATCAACA TCAGCTTCCC TAATCATCTC 421 ATCGACTTCT TCATCAGTAA GCTTCTCTCC AAGGTTAGTC ATCACATGAC GAAGCTCAGC 481 AGCGGAGATG AAGCCATTTT GATCCTTGTC GAAAACTCTG AATGCCTCTT TCAACTCCTC 541 CTCAGAGTCA GTATCCTTCA TCTTCCTGGC CATAAGGTTT AGAAACTCTG GGAAGTCGAT 601 GGTTCCATTA CCATCTGCAT CCACCTCGTT TATCATGTCC TGGAGCTCAG CTTTAGTAGG 661 GT Predicted gene structure (within gDNA segment 26158 to 32887): Exon 1 26821 26952 ( 132 n); cDNA 1 134 ( 134 n); score: 0.894 MATCH C08HBa0167P18.1+ SGN-E376754+ 0.894 132 0.199 C PGS_C08HBa0167P18.1+_SGN-E376754+ (26821 26952) Alignment (genomic DNA sequence = upper lines): TTTTGACTTA AAATAAGTTT TTTTGAACCT AAAATAAGTT ATTTTGAGTA TTGTAAAACA 26880 |||| ||| |||||||||| |||| ||| | |||||||||| |||||||||| |||| ||||| TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 60 GCTAAATAAG TC-AAAACCA GC-TTTTAAG TCAGTTTGAT CAGCTTTTAA GCTGAGCCAA 26938 |||||||||| || ||||||| || ||||||| ||||||||| ||| |||||| |||||||||| GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 120 ACAGGCTCTT AGAG 26952 ||||||||| |||| ACAGGCTCTA AGAG 134 hqPGS_C08HBa0167P18.1+_SGN-E376754+ (26821 26952) ******************************************************************************** EST sequence 31 -strand 387 n (File: SGN-E577960-) 1 AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 61 TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTTGC TCAAAAGTGG 121 TTTTTGGAGC CTTTGGGAGC TTCGAGTGTC GGAATAAAGT TCCATCAATA CCATCAGTAC 181 CGGAATGTGG AATCTGAGTT GTGAGAGTTG TTCGTTTCGT ATTCTGAGTC TTTTTGAGGA 241 TTTGAGGTCC TAAGTTGTGA AATTGTGGGC TTTTGGGTTG ACTTTGGTGA ACATTCGGGG 301 TTTGGATGCT CGGCTCAGAA TTTCCGAGTG TTTTGTTGAA TTTGGGGGAT GATTTTTGAG 361 AGGTTTCGAG CTTGTTTTAC ACTTTTG Predicted gene structure (within gDNA segment 25803 to 30387): Exon 1 26846 26950 ( 105 n); cDNA 1 106 ( 106 n); score: 0.900 Intron 1 26951 29161 (2211 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 2 29162 29175 ( 14 n); cDNA 107 120 ( 14 n); score: 0.786 MATCH C08HBa0167P18.1+ SGN-E577960- 0.900 119 0.307 C PGS_C08HBa0167P18.1+_SGN-E577960- (26846 26950,29162 29175) Alignment (genomic DNA sequence = upper lines): AACCTAAAAT AAGTTATTTT GAGTATTGTA AAACAGCTAA ATAAGTC-AA AACCAGCTTT 26904 ||| |||||| ||| | |||| |||||||| |||||| ||| ||||||| || |||||||||| AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 60 TAAGTCAGTT TGATCAGCTT TTAAGCTGAG CCAAACAGGC TCTTAGAGAA GTGTACCTTA 26964 |||||||||| ||| |||||| |||||||||| |||||||||| ||| || TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAG.... .......... 106 GTTATACTCT CAAGCTATTG TGGGTTTAAA TAGTGATGTA CACATTCTAA AATAGGAACG 27024 .......... .......... .......... .......... .......... .......... 106 ATTATCAAGA TTATAGATCC TACAGGAAAT TAACATGGTG ATAGTTATAG ATCCTAAATG 27084 .......... .......... .......... .......... .......... .......... 106 CATGCATATA TATATATATA TATATATATA TATATATATA TATATTAACA ATCATGCCTG 27144 .......... .......... .......... .......... .......... .......... 106 TACACATAGC ATGCTAAGCT TCTTCTTTTA CTTTCTTTTT CCTTCTTTTT TTTTTTTTTG 27204 .......... .......... .......... .......... .......... .......... 106 GGGGGGGGGG GGTGGGGGGG GGGAGGAGGG GGAGGAGGAG GTGGGTTTAG TCTTAGTGAA 27264 .......... .......... .......... .......... .......... .......... 106 ATATAGTCAA AGAAATGTCA AGATTAACAA GTGAACTCTA GAAAAGATCA ACTTTGTTTT 27324 .......... .......... .......... .......... .......... .......... 106 TTTGCTTAAA AGTTTAAATT GCTATTTCTT TTTTTATTGA TGAAGCAATG GTGATGGAGA 27384 .......... .......... .......... .......... .......... .......... 106 AAAATCCTTG AATACAAGAT GTAACAAAAG CATCGTTGAA TACAAGAATG TAACAAAAGC 27444 .......... .......... .......... .......... .......... .......... 106 AATTAACATC GTAGGAAACA TGCTTTTCTA CAATAGCACC TAATCTTTTG TAACAGGCAT 27504 .......... .......... .......... .......... .......... .......... 106 CTCATACGTG TTCCTACTGT ATACTACCAT ATAAGTACAA TACCTCAAAA CAAAATGTTG 27564 .......... .......... .......... .......... .......... .......... 106 ATCAGCTTTT ATATCCTTAG GAAATTACAT TAAAGTACAC ATTCCATTTA GATAAAATTG 27624 .......... .......... .......... .......... .......... .......... 106 TAATTACTCT ACAGGCCCTC AATTTATGAT TTATACTGTA ATAAATTTCT TGATTCTATT 27684 .......... .......... .......... .......... .......... .......... 106 ACACAACTTC CATACCCATG AGTTAAGAAA GCATAAAACT GCTCAGCCTG ATCTCCCTAA 27744 .......... .......... .......... .......... .......... .......... 106 TAGAGTCCCA ATTTGGCATT TGCATTTGTC ACTCTGACCT AGTAAAATCT GGACCTTTAA 27804 .......... .......... .......... .......... .......... .......... 106 AACTGATCAT CCATAAACAA CCAGCTAAAA GTAGGGATTT CGATATATAA GACGTCAAAG 27864 .......... .......... .......... .......... .......... .......... 106 TCAAATGCTC ATCCCGGATG ACATACTATG ATCATCATAG AGTAAGCAGC TTAAGAGTTC 27924 .......... .......... .......... .......... .......... .......... 106 ATGTCAAGTG ATACATTTAG ACGCAATACA TCAACAACAA CCCCTCCCCC CCCCCCCCGG 27984 .......... .......... .......... .......... .......... .......... 106 GCCTTAGTCC TAGTTGGCTT GGCTGTATGA CTCCTCAATA TTCATTCCTC TTCAATTGGG 28044 .......... .......... .......... .......... .......... .......... 106 CCTGTTTCAT TCCACTACTC ACAATGTAGC CAAATTGAAA CAGTATACTC GTAATGCATC 28104 .......... .......... .......... .......... .......... .......... 106 ATTAGCTCTA AGTCAAGTCA CCACCGAAAT GTTCCGATTA TGTACCACAA TTATATCTCC 28164 .......... .......... .......... .......... .......... .......... 106 TTGTTCAAGT AGTGGATCCA ATTTCGGTGT AACTAAATTA AGTCAAATTA TTCCAAATAA 28224 .......... .......... .......... .......... .......... .......... 106 GAATAGCAGT GTTGCCTAGC CATTTTGCTT TCCAAAAAAC AATGTGTTCC ACTACCTACT 28284 .......... .......... .......... .......... .......... .......... 106 TTGAAAGAGG AGTTCAAGGA AGATTCAACC CAAAGTTTGC TAATGAACTT CCAAATATCA 28344 .......... .......... .......... .......... .......... .......... 106 GTACGATGAG GGCATAATGT ACCAATGATT TTGCTCTTCA TATTTGTGTT TAACAGTTTT 28404 .......... .......... .......... .......... .......... .......... 106 GACTTCTTGT TCCCACATAC CTTATTCCTC TAAGTTGTAT TTCCACAACC ATTTCATCAA 28464 .......... .......... .......... .......... .......... .......... 106 CAAACACTTG ATGTGCGCTG CTAGATCTTT TATACCCAAA GTGCCTTGTA ATTTTGGTTG 28524 .......... .......... .......... .......... .......... .......... 106 AATAACTTTG GATCACTTTG TTATCATAAC CCAGACCGTT CCCTTCCCAC AAAAAAAGAT 28584 .......... .......... .......... .......... .......... .......... 106 CTTTCGAATC TAGCAAGCTG CTTTTATAGC TTGATTAGAA TAAGGAAAAA GAGACATAAA 28644 .......... .......... .......... .......... .......... .......... 106 ATTAACGGGG ATGCTGTTTA AAAAGCTACT TATGAGTGTT TATTTTCTAC CAATAGAGGG 28704 .......... .......... .......... .......... .......... .......... 106 ATAATACTTT TGCCAGGAAG CCAACCTTTC CTGTAGCTTC TCTAATCACC CAATTCCAGA 28764 .......... .......... .......... .......... .......... .......... 106 TCCCAGAGGA TTTAAATCTA GCAACCAGAG TAAACCCCAA ATAAGTAGTG GTGAATGTAC 28824 .......... .......... .......... .......... .......... .......... 106 TTATACTGCA ACATATAATT AAATTAGGGG CTTCATTGAC TGATAATAAT GCTTTTGAGC 28884 .......... .......... .......... .......... .......... .......... 106 ATGTTAATAT GTGCCCCTGA CAGCTTCAAA TATCAGCAAT GTAAGTTTGA GATGGATGCT 28944 .......... .......... .......... .......... .......... .......... 106 TTGGACCTTT CTGCACCACC AAAAAATAGT GTATTATCGG CATACAACCA GTGGGATACT 29004 .......... .......... .......... .......... .......... .......... 106 GAGACTGAAT CCGCAAAATT GCTGAATCTA CTGTGAATGC TTGGCTTTCT TTAGCATTTT 29064 .......... .......... .......... .......... .......... .......... 106 GCTAAGATAC TCCATTTCTG GAATAAAAAG AAAAAGGAAA AGGAGGTCTC CCTGCCTGAA 29124 .......... .......... .......... .......... .......... .......... 106 ACCTTTTTAT GGGGAGAAAA GCCATCAGGG ACCCTGATTA ATCAAAACTG G 29175 || |||||| || | .......... .......... .......... .......TTG CTCAAAAGTG G 120 hqPGS_C08HBa0167P18.1+_SGN-E577960- (26846 26950) ******************************************************************************** EST sequence 14 +strand 514 n (File: SGN-E256217+) 1 AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCTCTTAAA 61 ATGTCTGCTT AGATGTGCTA TATATATTTG AGCTTTTTTT GAAGTAGTAT ATTATCCTTA 121 AGTTCAACAT AAAAATACAT GCTTTAACAT AGCACATATA GTTAATCAAA AGACGAAATG 181 ATGAATAATT TTGCGAATTT GATTATTCAC AAGAAAAGGG ATAGTTCAAA GTGTACATTT 241 CAAGTAATTG AAGATATCAT AAAGACTAAA ATTAGAAGAA CTAATAATTG AGGGATCAAA 301 AATGTTATTA CCTTATTAAA ATACTATTCC ATTTTCATAT TAAATTAACT AATTAAGAGT 361 GTTTTATAAT CTAATAAAAC ATGCAATAAT TATTGACGAA ATGTGGTTTT GGTACCTATA 421 ATCTTTCTGA ATATTTGCTC TTATTTTTTC TCTTTTTATT TTTCCATGGA TTAGTATTGG 481 AAGCTTAGGA TCTGGAAATT CAGAAGCTTA TGTG Predicted gene structure (within gDNA segment 26283 to 32719): Exon 1 26893 26956 ( 64 n); cDNA 2 64 ( 63 n); score: 0.938 Intron 1 26957 28907 (1951 n); Pd: 0.000 (s: 0.92), Pa: 0.793 (s: 0) Exon 2 28908 28935 ( 28 n); cDNA 65 92 ( 28 n); score: 0.643 Intron 2 28936 29058 ( 123 n); Pd: 0.000 (s: 0), Pa: 0.583 (s: 0) Exon 3 29059 29064 ( 6 n); cDNA 93 97 ( 5 n); score: 0.833 Intron 3 29065 30094 (1030 n); Pd: 0.000 (s: 0), Pa: 0.992 (s: 0) Exon 4 30095 30108 ( 14 n); cDNA 98 111 ( 14 n); score: 0.643 Intron 4 30109 30529 ( 421 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 30530 30567 ( 38 n); cDNA 112 148 ( 37 n); score: 0.605 Intron 5 30568 31958 (1391 n); Pd: 0.900 (s: 0), Pa: 0.801 (s: 0.61) Exon 6 31959 31999 ( 41 n); cDNA 149 187 ( 39 n); score: 0.610 MATCH C08HBa0167P18.1+ SGN-E256217+ 0.938 191 0.372 C PGS_C08HBa0167P18.1+_SGN-E256217+ (26893 26956,28908 28935,29059 29064,30095 30108,30530 30567,31959 31999) Alignment (genomic DNA sequence = upper lines): AAAACCAGCT TTTAAGTCAG TTTGATCAGC TTTTAAGCTG AGCCAAACAG GCTCTTAGAG 26952 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| | AAAACCAGCT TTTAAGTCAG TTTGACCAGC TTTTAAGCTG AGCCAAACAG GCTCTTA-AA 60 AAGTGTACCT TAGTTATACT CTCAAGCTAT TGTGGGTTTA AATAGTGATG TACACATTCT 27012 | || ATGT...... .......... .......... .......... .......... .......... 64 AAAATAGGAA CGATTATCAA GATTATAGAT CCTACAGGAA ATTAACATGG TGATAGTTAT 27072 .......... .......... .......... .......... .......... .......... 64 AGATCCTAAA TGCATGCATA TATATATATA TATATATATA TATATATATA TATATATTAA 27132 .......... .......... .......... .......... .......... .......... 64 CAATCATGCC TGTACACATA GCATGCTAAG CTTCTTCTTT TACTTTCTTT TTCCTTCTTT 27192 .......... .......... .......... .......... .......... .......... 64 TTTTTTTTTT TGGGGGGGGG GGGGTGGGGG GGGGGAGGAG GGGGAGGAGG AGGTGGGTTT 27252 .......... .......... .......... .......... .......... .......... 64 AGTCTTAGTG AAATATAGTC AAAGAAATGT CAAGATTAAC AAGTGAACTC TAGAAAAGAT 27312 .......... .......... .......... .......... .......... .......... 64 CAACTTTGTT TTTTTGCTTA AAAGTTTAAA TTGCTATTTC TTTTTTTATT GATGAAGCAA 27372 .......... .......... .......... .......... .......... .......... 64 TGGTGATGGA GAAAAATCCT TGAATACAAG ATGTAACAAA AGCATCGTTG AATACAAGAA 27432 .......... .......... .......... .......... .......... .......... 64 TGTAACAAAA GCAATTAACA TCGTAGGAAA CATGCTTTTC TACAATAGCA CCTAATCTTT 27492 .......... .......... .......... .......... .......... .......... 64 TGTAACAGGC ATCTCATACG TGTTCCTACT GTATACTACC ATATAAGTAC AATACCTCAA 27552 .......... .......... .......... .......... .......... .......... 64 AACAAAATGT TGATCAGCTT TTATATCCTT AGGAAATTAC ATTAAAGTAC ACATTCCATT 27612 .......... .......... .......... .......... .......... .......... 64 TAGATAAAAT TGTAATTACT CTACAGGCCC TCAATTTATG ATTTATACTG TAATAAATTT 27672 .......... .......... .......... .......... .......... .......... 64 CTTGATTCTA TTACACAACT TCCATACCCA TGAGTTAAGA AAGCATAAAA CTGCTCAGCC 27732 .......... .......... .......... .......... .......... .......... 64 TGATCTCCCT AATAGAGTCC CAATTTGGCA TTTGCATTTG TCACTCTGAC CTAGTAAAAT 27792 .......... .......... .......... .......... .......... .......... 64 CTGGACCTTT AAAACTGATC ATCCATAAAC AACCAGCTAA AAGTAGGGAT TTCGATATAT 27852 .......... .......... .......... .......... .......... .......... 64 AAGACGTCAA AGTCAAATGC TCATCCCGGA TGACATACTA TGATCATCAT AGAGTAAGCA 27912 .......... .......... .......... .......... .......... .......... 64 GCTTAAGAGT TCATGTCAAG TGATACATTT AGACGCAATA CATCAACAAC AACCCCTCCC 27972 .......... .......... .......... .......... .......... .......... 64 CCCCCCCCCC GGGCCTTAGT CCTAGTTGGC TTGGCTGTAT GACTCCTCAA TATTCATTCC 28032 .......... .......... .......... .......... .......... .......... 64 TCTTCAATTG GGCCTGTTTC ATTCCACTAC TCACAATGTA GCCAAATTGA AACAGTATAC 28092 .......... .......... .......... .......... .......... .......... 64 TCGTAATGCA TCATTAGCTC TAAGTCAAGT CACCACCGAA ATGTTCCGAT TATGTACCAC 28152 .......... .......... .......... .......... .......... .......... 64 AATTATATCT CCTTGTTCAA GTAGTGGATC CAATTTCGGT GTAACTAAAT TAAGTCAAAT 28212 .......... .......... .......... .......... .......... .......... 64 TATTCCAAAT AAGAATAGCA GTGTTGCCTA GCCATTTTGC TTTCCAAAAA ACAATGTGTT 28272 .......... .......... .......... .......... .......... .......... 64 CCACTACCTA CTTTGAAAGA GGAGTTCAAG GAAGATTCAA CCCAAAGTTT GCTAATGAAC 28332 .......... .......... .......... .......... .......... .......... 64 TTCCAAATAT CAGTACGATG AGGGCATAAT GTACCAATGA TTTTGCTCTT CATATTTGTG 28392 .......... .......... .......... .......... .......... .......... 64 TTTAACAGTT TTGACTTCTT GTTCCCACAT ACCTTATTCC TCTAAGTTGT ATTTCCACAA 28452 .......... .......... .......... .......... .......... .......... 64 CCATTTCATC AACAAACACT TGATGTGCGC TGCTAGATCT TTTATACCCA AAGTGCCTTG 28512 .......... .......... .......... .......... .......... .......... 64 TAATTTTGGT TGAATAACTT TGGATCACTT TGTTATCATA ACCCAGACCG TTCCCTTCCC 28572 .......... .......... .......... .......... .......... .......... 64 ACAAAAAAAG ATCTTTCGAA TCTAGCAAGC TGCTTTTATA GCTTGATTAG AATAAGGAAA 28632 .......... .......... .......... .......... .......... .......... 64 AAGAGACATA AAATTAACGG GGATGCTGTT TAAAAAGCTA CTTATGAGTG TTTATTTTCT 28692 .......... .......... .......... .......... .......... .......... 64 ACCAATAGAG GGATAATACT TTTGCCAGGA AGCCAACCTT TCCTGTAGCT TCTCTAATCA 28752 .......... .......... .......... .......... .......... .......... 64 CCCAATTCCA GATCCCAGAG GATTTAAATC TAGCAACCAG AGTAAACCCC AAATAAGTAG 28812 .......... .......... .......... .......... .......... .......... 64 TGGTGAATGT ACTTATACTG CAACATATAA TTAAATTAGG GGCTTCATTG ACTGATAATA 28872 .......... .......... .......... .......... .......... .......... 64 ATGCTTTTGA GCATGTTAAT ATGTGCCCCT GACAGCTTCA AATATCAGCA ATGTAAGTTT 28932 || | | || || || || ||| .......... .......... .......... .....CTGCT TAGATGTGCT ATATATATTT 89 GAGATGGATG CTTTGGACCT TTCTGCACCA CCAAAAAATA GTGTATTATC GGCATACAAC 28992 ||| GAG....... .......... .......... .......... .......... .......... 92 CAGTGGGATA CTGAGACTGA ATCCGCAAAA TTGCTGAATC TACTGTGAAT GCTTGGCTTT 29052 .......... .......... .......... .......... .......... .......... 92 CTTTAGCATT TTGCTAAGAT ACTCCATTTC TGGAATAAAA AGAAAAAGGA AAAGGAGGTC 29112 | || || ......C-TT TT........ .......... .......... .......... .......... 97 TCCCTGCCTG AAACCTTTTT ATGGGGAGAA AAGCCATCAG GGACCCTGAT TAATCAAAAC 29172 .......... .......... .......... .......... .......... .......... 97 TGGGTACTTC ACTATAGTAA TAGTGATTTA TCCACCTTTC ACTGAATCCC TTTTTCTTTA 29232 .......... .......... .......... .......... .......... .......... 97 GAATTGGGAG AAGTTAAGAT CAATTATTGG TCAAAAGGCC TTCTCTATTT CAAGCTTGAA 29292 .......... .......... .......... .......... .......... .......... 97 AAAAGGCCAG ATCTCATTGC TTTCCAACAA TGTCAAAGAA CAGTACTTGT CCTAGAGCAT 29352 .......... .......... .......... .......... .......... .......... 97 GATATGGTGA CTATCAGAGA TTAAGCAGCT TAACTGAGAA TTCATGATGG CAGGTGATAC 29412 .......... .......... .......... .......... .......... .......... 97 ATTCAAACTT AGTACTACTA CAACAGCTAT ATCTCCACCT CAAACTAGTT TGGCATTGGC 29472 .......... .......... .......... .......... .......... .......... 97 TTTATGAAAC TTCCATATCC ATTCTGTTGC ATTTGGGCCA GTTTAATTGC AATACTGATA 29532 .......... .......... .......... .......... .......... .......... 97 ATGTAACAAC ATCAAAAAAA GGATACTTGT GATTTAGTGC ACCAACTACC TGATGCCAAA 29592 .......... .......... .......... .......... .......... .......... 97 ATGCCCCAAA TCGTTATCAC AAAGATATTC CCTTAGTTCA ACCAGCTGAT CCAACTGAGC 29652 .......... .......... .......... .......... .......... .......... 97 ATAACTAAAT CAAGTCAAAC TATTCCAAAC ATGAAAAAGA AAATCATGAA TCCCAAAAAC 29712 .......... .......... .......... .......... .......... .......... 97 CTGCAACCCT TTTTGTCTAC TTCCAGCTAT TAACACATAA AAAGCTAGTG CTAACAACAG 29772 .......... .......... .......... .......... .......... .......... 97 ATCTTTGAAG AAGAAAAAAC AAGCAGAAAT AAACATAAAC CATCAAACTA ATTTGACCCC 29832 .......... .......... .......... .......... .......... .......... 97 ACATAAAATA AACAAGAAAT GTTTTTTTGT TTGAAGAAAT TACCTTTCTT TGCGTTCCTG 29892 .......... .......... .......... .......... .......... .......... 97 AATACTCTTC ATCTGGGTCT TGTAGTGATT CTCAATAAAT TGCTTAGCAG CAGCAACTTT 29952 .......... .......... .......... .......... .......... .......... 97 CTCCATTGTC AAGCTTGAAC CAAGCACTTC CTCTTCGCAC TGTCCTTCCT CCATGTTTTC 30012 .......... .......... .......... .......... .......... .......... 97 CCCTCTTTTG AGCAAAACCA AAACAACCCT CTTCTTCTTC TCTCTACTCT TTCTCTCTCT 30072 .......... .......... .......... .......... .......... .......... 97 ATATGTATGT ATGTATGTAT AGGTTGAAAA AATAGAGTGA AACCTGAAAT GTACAGTTAG 30132 ||||| | || | .......... .......... ..TTTGAAGT AGTATA.... .......... .......... 111 GTTGGGAGTA CTGTTTGCCT CATCAGCACT GAGACTTCAC CAGTATTCGC TGGCAATTCT 30192 .......... .......... .......... .......... .......... .......... 111 TTGCGTCTTG TTTGGACGAT TCATAATACA CTGTGTAATT TCGACACTAA AATATCACTA 30252 .......... .......... .......... .......... .......... .......... 111 AATTAATATT GATTGAATTA TAAAATATTA CTATTTTATA AATATGTTAT TTAATAATAA 30312 .......... .......... .......... .......... .......... .......... 111 ATAAATTTTT ATTAATTTAA AAAGTATTTT TGAAATTCAA TAAAAGTTAG TTTTGATTAC 30372 .......... .......... .......... .......... .......... .......... 111 GTTAAAATTA TTGTATCTTA CTAATTTATA TAGTATCATA TTTACTTAAT TCATATAAAT 30432 .......... .......... .......... .......... .......... .......... 111 ACAAAATTTA TTAACATAAA GTAGATGACT ACTTCAAAAT CATTACTCTT ACTAAATTGT 30492 .......... .......... .......... .......... .......... .......... 111 GTATCATATT TATTGAATTC ATATAAATAT AAATTCATTA TACATAAAGT ACAATATATA 30552 ||| | | ||| || ||| ||| | .......... .......... .......... .......TTA TCCTTAA-GT TCAACATAAA 133 TGTATGAATT GTAATATATA CTTTTGTTAA ATTAATTTAT TGTAAAATAA ATTCAAGAAT 30612 || | ||| AATACATGCT TTAAC..... .......... .......... .......... .......... 148 TTAATGTTTC ATTACTAGAA TAAATTATTA AATATAATAA TATTCACAGT TTCTTAACAA 30672 .......... .......... .......... .......... .......... .......... 148 AATATTATTC ATTGTAGCTT TACTAAAATA TTCAATGCAA GATAGTGAGG AAATAAATTA 30732 .......... .......... .......... .......... .......... .......... 148 GGCTGAACCC ATCAGTGTCC TCCTTCTCCC CCAAAGTTGC CACCAATTTT TATTTAAACA 30792 .......... .......... .......... .......... .......... .......... 148 CCTCAATTAA GCTTTGTTCA TTTTAGAAAT CTCATGTCGT GTCTTGCTGT GTTATTTAGA 30852 .......... .......... .......... .......... .......... .......... 148 TATTGTTGAC AATCAATCAA ATATATAAGG TTTGTGTCAC ACACTCAATG ATGACATGGC 30912 .......... .......... .......... .......... .......... .......... 148 AAATTAAATA AAAACATGTG GCATATATAT AAAAATAATA TTTAAATAGT GATATTTTAG 30972 .......... .......... .......... .......... .......... .......... 148 TAGAAAGAAG AAGTGGTCAA CGACTAAATG ATACTTGGAA TTTTTTTTAA CTCAAAAAAT 31032 .......... .......... .......... .......... .......... .......... 148 TTAAAAAAAA AAACTCGACC GCACCTAGAT CATCTTCTCT GCCCCCACCC ACCCAAACCC 31092 .......... .......... .......... .......... .......... .......... 148 CTCTCCACCA ACTCAAATTG GCTTCTCCGC TCTTCCCCTC CCACCCAACG GCTTCTCCAC 31152 .......... .......... .......... .......... .......... .......... 148 CTCTACCCCA CCCTAACACA TCTCTTCCTC ACCCACATCG TCTTCTCTGC TCCTCACCTA 31212 .......... .......... .......... .......... .......... .......... 148 CCCCACCAAT CGTCTTCTTC AAAGTTTGTG TTTGAAGAGG AAAAAGTGTT AAACAAGTTC 31272 .......... .......... .......... .......... .......... .......... 148 TAGAAGTGAC CAATCACCGA GTTCGACTTA GTTTGACGAA CTCAAATAGA ATAGCAAACA 31332 .......... .......... .......... .......... .......... .......... 148 CACACGTACT ACTATTCAAA ACTAAGTTTA GATTATTTAT GAATCTATGA TTTTTCGCTG 31392 .......... .......... .......... .......... .......... .......... 148 TCTTTCTTCT TTACCGCAAC ACAAATTGTG AGTCTTCTAA TGGGTTGAAA TTCATTTTTT 31452 .......... .......... .......... .......... .......... .......... 148 AAAAAAATAT CTTCGTGTTT AAATTCATTA TTTTATCAAT AGCATTATCA AACTTATTTC 31512 .......... .......... .......... .......... .......... .......... 148 TCCATGGAAG AAGTTCAAGT TATGCGAGAT GGTGGCATAC CTGTTTCTCC ATGGTGGTTG 31572 .......... .......... .......... .......... .......... .......... 148 AAAAATGAGA AAGAAAATGA AAAATAAAAT AAAAATAATT AAATGAGTCT TTCAAGCGCT 31632 .......... .......... .......... .......... .......... .......... 148 AGTACTAAGT ATATTACACT CATTATGCCA TGTCAGTAAA AAGTGTCAAA GTGACAAAGT 31692 .......... .......... .......... .......... .......... .......... 148 GAAACATGAC ATCAGGTGTC TAAAATGAAC AAAGCTTAGT AGAGGTATCT AAGTGAAAAT 31752 .......... .......... .......... .......... .......... .......... 148 TGATGTCAAC TGTAAGGGCC ATCGATGGAT TCAGCCAGAA AATTATATAA GCAACATAGG 31812 .......... .......... .......... .......... .......... .......... 148 AAATTTCTAA ATCATATCCA AAAATGGCTT ATCAAAAGAC ACTACAACAA ATATGATATA 31872 .......... .......... .......... .......... .......... .......... 148 TAGCTACAAA ATTATTAGCT ACGATATCAA ATTCGTCACT AATTATTCGC TTTTAGTGAC 31932 .......... .......... .......... .......... .......... .......... 148 AAAATTTATT TTTCATGCTT AAATAGATGA GACACATATT TTTAGTGATG AAACATAAGA 31992 || | | ||||||| ||| | | | || || .......... .......... ......AT-A G-CACATATA GTTAATCAAA AGACGAAATG 180 ATTCGTA 31999 || || ATGAATA 187 hqPGS_C08HBa0167P18.1+_SGN-E256217+ (26893 26956) ******************************************************************************** EST sequence 37 +strand 642 n (File: SGN-E312750+) 1 ACAAATACAA AAAAGCACAA ATACATATCA ATGAAAGTGT ATCAACTAAA GAATACAAGT 61 ACGAAACAAT AAATATTAGC GATCTAGTGG AAGAATCATG TCCCACTCAC AATACATATT 121 ACCTGGAGTA TACTTTTCAA ATGATGCATT TTATAATTAT GTAATTTAAG AAAATTGATG 181 TATTGAACTT TTTCATTTTT ACAAAATCGT CTGAATTTGT TGGTTTTAAT ATTTTTCCTC 241 GACAATTAAC GAAAAGACTC TGTTTATTTT TTATGAAGCA CTTGTATTAT TTCTTTTGTT 301 ATAAGTTGTC ACTTGTAATT ATAAATAATT GCAGCAAAAA ATTTTATTTA GCTATGGTTT 361 TTTCGTGACA AATAGTTGAA TTATTCACTA CAAATTTTAA ATCTCGCTAT TTAACACCTT 421 ATATATTTTG TGACAATTTT TTGTTGTCAC TAAATCGCAG ATGATTAGAG GCAATAAAAT 481 CTTTGTCGCC AATTATTTAT ATATTTAATG ATGAAAATAA CTGTCATAAT TAAATTTAAA 541 TTTTTATAGC TAAACCTTAT AATATTAAAC TACGAACTCT AATTTGTCGA TATTGTAACA 601 ACATATTTTT GTAGATGAAT TTTGTGTCCA TATATTAATA AA Predicted gene structure (within gDNA segment 34803 to 31496): Exon 1 32952 32392 ( 561 n); cDNA 81 642 ( 562 n); score: 0.817 MATCH C08HBa0167P18.1- SGN-E312750+ 0.817 561 0.874 C PGS_C08HBa0167P18.1-_SGN-E312750+ (32952 32392) Alignment (genomic DNA sequence = upper lines): GATCTAGTAG TAGAACCGTG -CACACTCAC AATACCTATA ACCCGGATTG TACTTTTCAA 32894 |||||||| | |||| | || | ||||||| ||||| ||| ||| ||| | |||||||||| GATCTAGTGG AAGAATCATG TCCCACTCAC AATACATATT ACCTGGAGTA TACTTTTCAA 140 ATGATGCATT TTATAATTGC GTAATTTAAG AAAATTGATG ---TGAACTT TTTCATTTTT 32837 |||||||||| |||||||| |||||||||| |||||||||| ||||||| |||||||||| ATGATGCATT TTATAATTAT GTAATTTAAG AAAATTGATG TATTGAACTT TTTCATTTTT 200 ATAAAATCGA CCGAATTGAT TGGTTTTAAT ATTTTTACTT GCCAATTAAT GAATGGATTC 32777 | ||||||| | ||||| | |||||||||| |||||| || | ||||||| ||| || || ACAAAATCGT CTGAATTTGT TGGTTTTAAT ATTTTTCCTC GACAATTAAC GAAAAGACTC 260 TGCCTACTTT TTATGAAGCA CTTGTATTA- TTC-TTT-TT ATAAGTCGTC ACTTGTAATT 32720 || || ||| |||||||||| ||||||||| ||| ||| || |||||| ||| |||||||||| TGTTTATTTT TTATGAAGCA CTTGTATTAT TTCTTTTGTT ATAAGTTGTC ACTTGTAATT 320 ATGAAAAATT GTAGAAAAAA AATTGTATTT AGTTATGATT TTTTTTGTAG CAAATAATTT 32660 || || |||| | || |||| |||| ||||| || |||| | ||||| || |||||| || ATAAATAATT GCAG-CAAAA AATTTTATTT AGCTATG-GT TTTTTCGTGA CAAATAGTTG 378 AACTATTCAC TACAAATTTT AAGTCGTCGC TATTTAACAC CTGACATATT TTGTGACAAT 32600 || ||||||| |||||||||| || || |||| |||||||||| || | ||||| ||||||||| AATTATTCAC TACAAATTTT AAATC-TCGC TATTTAACAC CTTATATATT TTGTGACAA- 436 TTTTTTGCTG TAACTAAATT ATAGATTGAT TAGACACAAT ATAATATTTG ACACCTATTA 32540 ||||||| || | ||||||| ||| |||| |||| |||| | ||| |||| | || |||| TTTTTTGTTG TCACTAAATC GCAGA-TGAT TAGAGGCAAT AAAATCTTTG TCGCCAATTA 495 TTTATATTGT TAGTGAGGAA A-TAAATTTC ATAATTAAAT ATAAATTTTC ATAGCTAAAA 32481 ||||||| | || ||| ||| | ||| | || |||||||||| |||||||| ||||||||| TTTATATATT TAATGATGAA AATAACTGTC ATAATTAAAT TTAAATTTTT ATAGCTAAAC 555 TTTATAATAT TTGACTATGA ACTCTAATTT GTCGATATTG TAACAACATA TTTTTTTAGA 32421 ||||||||| | |||| || |||||||||| |||||||||| |||||||||| ||||| |||| CTTATAATAT TAAACTACGA ACTCTAATTT GTCGATATTG TAACAACATA TTTTTGTAGA 615 TAAAATTTTT TGTGTCCAAA T-TTAATAAA 32392 | || ||| |||||||| | | |||||||| T-GAA--TTT TGTGTCCATA TATTAATAAA 642 hqPGS_C08HBa0167P18.1-_SGN-E312750+ (32952 32392) ******************************************************************************** EST sequence 7 +strand 666 n (File: SGN-E352364+) 1 GAAGTACACA TATGCCTCCT TCCATATAGA CCAAAGAGAT CCTCAAAACT ACCCCTTTTT 61 GGCTTACTCA CCTCGGGAGA ACAAGCCACC ATTCAATGAC AAGACATTAG AAGAGAACCT 121 AATAAACCCA CAAAGACTTC CCTTTCGGAA TGCCTACTTC GTGCAATTAT TAGATGGCGT 181 CCCATATCAC CACCTACCCT ATGTATGATA CTCTTTTTAA AGGCTTGTAA CCAAGAATGC 241 CCTTTCGGAA GGTCTTCTTA ATGAAATAGA TAGATAGTGT CCCATTACAC TACCTAACCT 301 AAGTAGTACG TTCTTTTAGG AGACTTAGTT CATTCAATTC ACATAAGACT CACTATGACT 361 CCCCTTTCGG AATGCCTGCC TAGTGCAATG GATAAATAGT GTCCTATTCC ACTACCTACC 421 CTATGTAGTA CAGTCTTTTA GAAGACTTAG AATTTTTGTT TCTTTTGTGG GAGTTAGCTT 481 AACCGACATA TACCATGAGA TATAGACATG GAATCCCGAT ATTAATTCCA ATCATATGAG 541 GGATCCTTAC TTGCCTATAG TAAGGTCATT CTTTTTAGCT TTTACATGGC TTTCCCCATA 601 GATACACCTA TCCTGGCACA TAGTTAAGGG GATAGGAGAT CTCTACTAAG TAACTCATTA 661 TCTACT Predicted gene structure (within gDNA segment 33390 to 37700): Exon 1 34484 35144 ( 661 n); cDNA 1 666 ( 666 n); score: 0.826 MATCH C08HBa0167P18.1+ SGN-E352364+ 0.826 661 0.992 C PGS_C08HBa0167P18.1+_SGN-E352364+ (34484 35144) Alignment (genomic DNA sequence = upper lines): GAAACTCACA TATACCTCCT TCAATACACA CCAAAGTGAC CCTCAAGACT ACCTCTTTTT 34543 ||| |||| ||| |||||| || ||| | | |||||| || |||||| ||| ||| | |||| GAAGTACACA TATGCCTCCT TCCATATAGA CCAAAGAGAT CCTCAAAACT ACC-CCTTTT 59 TGGCTTACTC ACCTCGGGAG AACAAGCACC CACACAATGA CAAAACATTA GAAGAACACT 34603 |||||||||| |||||||||| ||||||| | || |||||| ||| |||||| ||||| || TGGCTTACTC ACCTCGGGAG AACAAGCCAC CATTCAATGA CAAGACATTA GAAGAGAACC 119 CAAGCAACAC CAAAAGACTT --C-TTCGGA ATGCCTACTT AGTGCAATGA GTAGATGGTG 34660 || ||| | |||||||| | |||||| |||||||||| ||||||| | ||||||| | TAATAAACCC ACAAAGACTT CCCTTTCGGA ATGCCTACTT CGTGCAATTA TTAGATGGCG 179 TCTCATTCCA CCACCTACCC TAAGTAGTAC ACTCTTTTAG AAGGCTTAGC ACCAAAACTC 34720 || ||| || |||||||||| || ||| | |||||||| ||||||| ||||| | | TCCCATATCA CCACCTACCC TATGTATGAT ACTCTTTTTA AAGGCTTGTA ACCAAGAATG 239 CCCTTTCGGA AGGTCTACTT AGAGCAATGG ATAGATAG-G GCCCATTCCA CCACCTACCC 34779 |||||||||| |||||| ||| | | ||| | |||||||| | |||||| || | ||||| || CCCTTTCGGA AGGTCTTCTT AATGAAATAG ATAGATAGTG TCCCATTACA CTACCTAACC 299 TAAGTAGTAC GTTCTTTTAG GAGACTTAGT TCATTCAATT CATATAAGAC TCACCAACAC 34839 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||| | || TAAGTAGTAC GTTCTTTTAG GAGACTTAGT TCATTCAATT CACATAAGAC TCACTATGAC 359 TCCCCTTTCG GAATGCCTAC CTAGTGCAAT GGATAAATAG CGTCTCATTC CACTACCTAC 34899 |||||||||| |||||||| | |||||||||| |||||||||| ||| |||| |||||||||| TCCCCTTTCG GAATGCCTGC CTAGTGCAAT GGATAAATAG TGTCCTATTC CACTACCTAC 419 CCTAAGTGGT ACACTCTTTT AGAAGACTTA GCATTTTCAT TACTTTTGTA GGGGTTAGCT 34959 |||| || || ||| |||||| |||||||||| | ||||| | | ||||||| || ||||||| CCTATGTAGT ACAGTCTTTT AGAAGACTTA GAATTTTTGT TTCTTTTGTG GGAGTTAGCT 479 TAATCGACTT AGACCATGAG AGCTAGACAT GGAATCCTGA TATTAA-CCC TATCGGATGA 35018 ||| |||| | | |||||||| | ||||||| ||||||| || |||||| || ||| |||| TAACCGACAT ATACCATGAG ATATAGACAT GGAATCCCGA TATTAATTCC AATCATATGA 539 GGGATCCTCA CTTGCCTAGA GTAAGGTCAT TC-TCTTAGC TTTTACATGG CTTTCCTAAT 35077 |||||||| | |||||||| | |||||||||| || | ||||| |||||||||| |||||| || GGGATCCTTA CTTGCCTATA GTAAGGTCAT TCTTTTTAGC TTTTACATGG CTTTCCCCAT 599 AGCTACACCT ATGCGGGGGC ATAGTTAAGG GATAAGGAAA TTGCTGGTAA GTAACTCATT 35137 || ||||||| || | || | |||||||||| | |||| | | || ||| |||||||||| AGATACACCT ATCCTGGCAC ATAGTTAAGG GGATAGGAGA TCTCTACTAA GTAACTCATT 659 CTCTACT 35144 |||||| ATCTACT 666 hqPGS_C08HBa0167P18.1+_SGN-E352364+ (34484 35144) ******************************************************************************** EST sequence 12 -strand 713 n (File: SGN-E541821-) 1 AGACATGCAT CATTATACTT GACATTGCAT TCCATTGCAT TGCACATACT TACCATTAGT 61 GAACTTGATA TCGTATTTCG CTGATGTTTT GATTGCTTTT CTGCGGAACT TGTGATTGAT 121 CAATATTGAG CTTGTTATTG CGGATATGTA ATTTGTTGAA GTATTGTTGT TGAGGATATG 181 TAATTTGTTG AAGTATTGTT GTTGAGGATA TGTAATTTGT TGAAGTGTTG TTGTTGAGGA 241 TATGTAATTT GCCTAAGTGT TGTTGTTGAG CTATGTGCTA TGTAAATTGT GAGCTGTTAG 301 GTTGGGTTGA TTTTAATGCA GGTTGTATTT GTGGAGGTTC GGTTGGGGGT GGTAGGAGTA 361 CCCGTATTTC ATCCCCTTAG CTTATGTTTA GAGGTTTACT TGCTGAGTAC CGTGTGGTTT 421 GGTACTCACC CCTTGCTTCT ACAAATTTTT GTAGGTTATG AGCCTGGATT TTTGTTGTAC 481 TTGTCAGTCT CTTCTTTTCC GAGGCTTCAT GGAGATTTGT GAGGTAGCTG TTTCCATCTC 541 AGCAGACTTT CTTCTCCATA ATTATGATCT TGTTCTATTC TAGAAACAAG TTCATTTGAG 601 ACTTGAGTTT TTTTCTTTTG AATCTTGTAA TACTTTAGAG GCTTGTACAC GTGACTACCC 661 AGGTCTTGGG GGTTTAATTA AGTTACTTAT ATTTTATTTC TGCAAAAAAA AAA Predicted gene structure (within gDNA segment 43965 to 39508): Exon 1 43224 42730 ( 495 n); cDNA 164 659 ( 496 n); score: 0.813 PPA cDNA 704 713 MATCH C08HBa0167P18.1- SGN-E541821- 0.813 495 0.694 C PGS_C08HBa0167P18.1-_SGN-E541821- (43224 42730) Alignment (genomic DNA sequence = upper lines): TTGTTGTTGA GGATATATAA TTTGTTGAAG TGTTTTTGTT GAGGATATGT AATTTGTCAA 43165 |||||||||| |||||| ||| |||||||||| | || ||||| |||||||||| ||||||| | TTGTTGTTGA GGATATGTAA TTTGTTGAAG TATTGTTGTT GAGGATATGT AATTTGTTGA 223 AGTGTTGTTG TGGAGAATAT ATAA-TTGTC TAAGTGTTGT TGTGGATAAT ATGTGCTATG 43106 |||||||||| | ||| |||| ||| ||| | |||||||||| ||| || | |||||||||| AGTGTTGTTG TTGAGGATAT GTAATTTGCC TAAGTGTTGT TGTTGA-GCT ATGTGCTATG 282 TAAACTGTGA GTTGTTAGGT TGGGCTGATT CTTTTGTGTA GGTTGTAGTC GTGGAGGTTC 43046 |||| ||||| | |||||||| |||| ||| | ||| || | ||||||| | |||||||||| TAAATTGTGA GCTGTTAGGT TGGGTTGA-T -TTTAATGCA GGTTGTATTT GTGGAGGTTC 340 GGTT-GGGGT AGTAGGAGTA CCCCTATGTC ACCCCCCTTA GCTTGTGTTT AGAGGTTTAC 42987 |||| ||||| ||||||||| ||| ||| || | ||||||| |||| ||||| |||||||||| GGTTGGGGGT GGTAGGAGTA CCCGTATTTC A-TCCCCTTA GCTTATGTTT AGAGGTTTAC 399 TTGATGAGTA CCGTGTGGTT TGGTACTCAT TCCTTGCTTC TACAATTTTT TGTAGGTTAT 42927 ||| |||||| |||||||||| ||||||||| ||||||||| ||||| |||| |||||||||| TTGCTGAGTA CCGTGTGGTT TGGTACTCAC CCCTTGCTTC TACAAATTTT TGTAGGTTAT 459 TAGCCCGGAA CTTTG-TG-A TATGT---TC TCTTCTTTTT CGAGTCTTCT TGGAGATTTG 42872 |||| ||| |||| || | ||| || ||||||||| |||| |||| |||||||||| GAGCCTGGAT TTTTGTTGTA CTTGTCAGTC TCTTCTTTTC CGAGGCTTCA TGGAGATTTG 519 TAAGATAGTT GCTTATCATC TTAGCAGACC TTTTTTCTCC TTATTAATGA TTTTGTTCTA 42812 | || ||| | | || |||| | |||||| | ||| |||||| || | |||| | |||||||| TGAGGTAGCT G-TTTCCATC TCAGCAGA-C TTTCTTCTCC ATAATTATGA TCTTGTTCTA 577 TTCTAGAAAC AAGGTTATTG GAGACTTGTA TTTTTCTTTC AATTTTGTTA TAACATATTA 42752 |||||||||| ||| | ||| |||||||| ||||| | | | || ||| | ||| TTCTAGAAAC AAGTTCATTT GAGACTTGAG TTTTTTTCTT TTGAATCTTG TAATACTTTA 637 GAGACTTGTA CACGTGACAA CC 42730 ||| |||||| |||||||| | || GAGGCTTGTA CACGTGACTA CC 659 hqPGS_C08HBa0167P18.1-_SGN-E541821- (43224 42730) ******************************************************************************** EST sequence 13 -strand 557 n (File: SGN-E243101-) 1 TCATTGTTGA TGTAACTTGA TGTTTGTGTG GTTGTGAACT GTAGGATGTT ATGAAAATGG 61 TCATCTCCTC ATTATATGTG TGAACTTGTC ATCTGCATTA TTCTGAGGCA TTGGTTGTGG 121 CAAGTGTTAT GTGCATTGAG AAATAATGGG TACTTAAGAG GATGTACCAT TTCGAGGGAC 181 GTATCGCGCG CCGCGATGGA TACTATATTT CGAGGAACGT ATCGCGCGCC GTGATGGTTA 241 CTATTATCGA GGATCGTGTC GTGCGCCGCG ACAGATGCAT GGACAGATAT GTCCCCCAAG 301 GGTCCCGGAC TGAGAGACAG CGGGTGTATA TCACTAGGTC AGACATGCAT CATTATACTT 361 GACATTGCAT TCCATTGCAT TACACACTTA TCATTAGTGA ACTTGATATC GTATTTTCTC 421 GATCTTCTTA TTGCCTTTCT GCAGAACTTG TGATTGATTA ATATTGAGCT TGTTATGGCG 481 GATATATAAT TTGTTGAACT ATTCTTGTTG AGGATATGTA ATTTGTTGAA GTGTTGTTGT 541 TGAGGATATG TAATTTG Predicted gene structure (within gDNA segment 45394 to 42569): Exon 1 43470 43139 ( 332 n); cDNA 226 555 ( 330 n); score: 0.845 MATCH C08HBa0167P18.1- SGN-E243101- 0.845 332 0.596 C PGS_C08HBa0167P18.1-_SGN-E243101- (43470 43139) Alignment (genomic DNA sequence = upper lines): GCGCCGCGAT GG-AACTATA TTTTGAGGGA CCTATCGCAC GCAGCGATAG ATGCATTGAC 43412 |||||| ||| || ||||| | | |||| | | ||| | || |||| || |||||| ||| GCGCCGTGAT GGTTACTAT- TATCGAGGAT CGTGTCGTGC GCCGCGACAG ATGCATGGAC 284 AGATATGTCC CCCATGGGTC CCAAACTGAG AGACAGCGGG TGTGTATCAC TAGGTCAGAC 43352 |||||||||| |||| ||||| || |||||| |||||||||| ||| |||||| |||||||||| AGATATGTCC CCCAAGGGTC CCGGACTGAG AGACAGCGGG TGTATATCAC TAGGTCAGAC 344 ATGCATCATT ATACTTGACA TCGTATTCCA TTGCATTGCA CATACTTATC ATTAGTGAAA 43292 |||||||||| |||||||||| | | |||||| ||||||| | || ||||||| ||||||||| ATGCATCATT ATACTTGACA TTGCATTCCA TTGCATT--A CACACTTATC ATTAGTGAAC 402 TTGATATTAT GTTTTGCTGA TCTTGTGAAT GCATTTCTGC GAAACTTGTG ATTGATGAAT 43232 ||||||| | |||| || |||| | | | || ||||||| |||||||| |||||| ||| TTGATATCGT ATTTTCTCGA TCTTCTTATT GCCTTTCTGC AGAACTTGTG ATTGATTAAT 462 ACTGAGCTTG TTGTTGAGGA TATATAATTT GTTGAAGTGT TTTTGTTGAG GATATGTAAT 43172 | |||||||| || | | ||| |||||||||| |||||| | | | |||||||| |||||||||| ATTGAGCTTG TTATGGCGGA TATATAATTT GTTGAACTAT TCTTGTTGAG GATATGTAAT 522 TTGTCAAAGT GTTGTTGTGG AGAATATATA ATT 43139 |||| |||| |||||||| | || |||| || ||| TTGTTGAAGT GTTGTTGTTG AGGATATGTA ATT 555 hqPGS_C08HBa0167P18.1-_SGN-E243101- (43470 43139) ******************************************************************************** EST sequence 34 +strand 681 n (File: SGN-E539191+) 1 CTTGTGGTAT ATGTTTGGGA GTAACGGGAT TGGTGATGGA TTGACTTGTC CACATTGATT 61 AATTTAATGA TGAAAAAAAA AGGATAAAAA AAAAGGCAAT GTGATTAAAT ATTTAAGTGT 121 GATGTGTTCA GAAAGGGATG AAGGATTGTT GAATCATTGT TGATGTGATT TCATGTTTGT 181 GTGGTTTTGA ATTGTGCAAT GTTATGAAAA TGGTCATCTC CTCATTATTT GTGTGAACTT 241 GCCATCTGCA TTATTATGAG GCATTGGTTG TGACAAGTGT TATGTGCATT GAGAAAGAAT 301 GAGTACTTAA GAGGATGTAC AATTTCGAGG GACGTATCGC GCGCCGCGAT GGATACTATA 361 TTTCGAGGGA CGTATCGCAT GCCGCGATGG ATACTATATT TTGAGGGACG TATCGCGCGC 421 CGCGATGGTT ACTATTATCG AGGGTCGTGT CGTGCGCCGC GACAGATGCA TGGACAGATA 481 TGTCCCCCAT GGTTCCCAGA CTGAGAGACA GCGGGTGTGT ATCACTAGGT CAGACATGCA 541 TCATTATACT TGACAATGCA TTACACATAC TTATCATTGG TGAACTTGAT ATTGTGTTTT 601 GCTGATCTTG TGATTGAATT TCTGCGAAAT TTGTGATTGA TGAATACTGA GCTTGTTATT 661 GAGGATATAT AATTTGTTGA A Predicted gene structure (within gDNA segment 45394 to 42586): Exon 1 43470 43196 ( 275 n); cDNA 417 681 ( 265 n); score: 0.875 MATCH C08HBa0167P18.1- SGN-E539191+ 0.875 275 0.404 C PGS_C08HBa0167P18.1-_SGN-E539191+ (43470 43196) Alignment (genomic DNA sequence = upper lines): GCGCCGCGAT GG-AACTATA TTTTGAGGGA CCTATCGCAC GCAGCGATAG ATGCATTGAC 43412 |||||||||| || ||||| | | ||||| | | ||| | || |||| || |||||| ||| GCGCCGCGAT GGTTACTAT- TATCGAGGGT CGTGTCGTGC GCCGCGACAG ATGCATGGAC 475 AGATATGTCC CCCATGGGTC CCAAACTGAG AGACAGCGGG TGTGTATCAC TAGGTCAGAC 43352 |||||||||| ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||| AGATATGTCC CCCATGGTTC CCAGACTGAG AGACAGCGGG TGTGTATCAC TAGGTCAGAC 535 ATGCATCATT ATACTTGACA TCGTATTCCA TTGCATTGCA CATACTTATC ATTAGTGAAA 43292 |||||||||| ||||||| | | | | |||||| || |||||||||| ||| ||||| ATGCATCATT ATACTTG--A -C--A----A -TGCATTACA CATACTTATC ATTGGTGAAC 585 TTGATATTAT GTTTTGCTGA TCTTGTGAAT GCATTTCTGC GAAACTTGTG ATTGATGAAT 43232 |||||||| | |||||||||| |||||||| | | |||||||| |||| ||||| |||||||||| TTGATATTGT GTTTTGCTGA TCTTGTGATT GAATTTCTGC GAAATTTGTG ATTGATGAAT 645 ACTGAGCTTG TTGTTGAGGA TATATAATTT GTTGAA 43196 |||||||||| || ||||||| |||||||||| |||||| ACTGAGCTTG TTATTGAGGA TATATAATTT GTTGAA 681 hqPGS_C08HBa0167P18.1-_SGN-E539191+ (43470 43196) Total number of EST alignments reported: 44 ________________________________________________________________________________ Predicted gene locations (6) in segment 1 to 45394: PGL 1 (+ strand): 4786 7685 AGS-1 (4786 5074,5858 6009,6132 6257,7184 7685) SCR (e 1.000 d 0.999 a 0.998,e 1.000 d 0.996 a 0.945,e 1.000 d 0.984 a 0.997,e 1.000) Exon 1 4786 5074 ( 289 n); score: 1.000 Intron 1 5075 5857 ( 783 n); Pd: 0.999 Pa: 0.998 Exon 2 5858 6009 ( 152 n); score: 1.000 Intron 2 6010 6131 ( 122 n); Pd: 0.996 Pa: 0.945 Exon 3 6132 6257 ( 126 n); score: 1.000 Intron 3 6258 7183 ( 926 n); Pd: 0.984 Pa: 0.997 Exon 4 7184 7685 ( 502 n); score: 1.000 PGS (4786 4982) SGN-E320867+ PGS (4792 5074,5858 6009,6132 6257,7184 7349) SGN-E346224+ PGS (4792 5074,5858 6009,6132 6246) SGN-E256432+ PGS (4817 5074,5858 6009,6132 6257,7184 7292) SGN-E328740+ PGS (4837 5074,5858 5950) SGN-E338185+ PGS (4847 5074,5858 6009,6132 6257,7184 7388) SGN-E343740+ PGS (4875 5074,5858 6009,6132 6233) SGN-E343543+ PGS (4918 5074,5858 6009,6132 6257,7184 7286) SGN-E306352+ PGS (6200 6257,7184 7660) SGN-E356140+ PGS (6200 6257,7184 7660) SGN-E356870+ PGS (6200 6257,7184 7660) SGN-E355454+ PGS (6200 6257,7184 7554) SGN-E349108+ PGS (7184 7679) SGN-E266461- PGS (7258 7679) SGN-E224363- PGS (7284 7679) SGN-E350774+ PGS (7308 7685) SGN-E298654+ PGS (7330 7679) SGN-E224863- PGS (7425 7679) SGN-E307563- 3-phase translation of AGS-1 (+strand): . . . . . . 4786 AAAAAGAAAAGAGGCAAAGTTATCAAATCAAAAACCCTACTTCCTCCCTTGTTGTTCTTC K K K R G K V I K S K T L L P P L L F F K R K E A K L S N Q K P Y F L P C C S S K E K R Q S Y Q I K N P T S S L V V L . . . . . . 4846 TTCTTCTTCAAATCCGCCGTAAATCTTTCTAAAACCAAAAATCTAGAGTGATGGCAAGCA F F F K S A V N L S K T K N L E - W Q A S S S N P P - I F L K P K I - S D G K H L L L Q I R R K S F - N Q K S R V M A S . . . . . . 4906 CTACTGTTGAACCCAAATTGGAGAAGAAAGAAGAGGAAGTAGAAGCAGAAGTAGAAGAAA L L L N P N W R R K K R K - K Q K - K K Y C - T Q I G E E R R G S R S R S R R K T T V E P K L E K K E E E V E A E V E E . . . . . . 4966 ACCCAACTGGCGATGATGAAGACACTGGTGCACAAGTTGCTCCCATTGTTAGGCTACAAG T Q L A M M K T L V H K L L P L L G Y K P N W R - - R H W C T S C S H C - A T R N P T G D D E D T G A Q V A P I V R L Q . . . . . : . 5026 AAGTTGCTGTCTCCACTGGTGAAGAAAATGAACATGTTCTTCTTGATCT : GAAATCAAAGT K L L S P L V K K M N M F F L I : - N Q S S C C L H W - R K - T C S S - S : E I K V E V A V S T G E E N E H V L L D L : K S K . . . . . . 5869 TATACCGATTTGACAAGGAAGGGAGTCAATGGAAAGAGAGAGGTGTTGGGACTGTGAAGC Y T D L T R K G V N G K R E V L G L - S I P I - Q G R E S M E R E R C W D C E A L Y R F D K E G S Q W K E R G V G T V K . . . . . . 5929 TTCTCAAGCACAAGGAAACTGGAAAGGTTAGGCTTGTGATGAGGCAATCCAAGACGCTGA F S S T R K L E R L G L - - G N P R R - S Q A Q G N W K G - A C D E A I Q D A E L L K H K E T G K V R L V M R Q S K T L . . . : . . . 5989 AAATCTGTGCCAACCACTTGG : TCCTTCCTACTATGTCGATCCAAGAACATGCTGGGAATG K S V P T T W : S F L L C R S K N M L G M N L C Q P L G : P S Y Y V D P R T C W E - K I C A N H L : V L P T M S I Q E H A G N . . . . . . 6171 AGAAGTCTTGTGTGTGGCATGCTGCTGACTTTGCTGATGGAGAACTGAAAGATGAGACTT R S L V C G M L L T L L M E N - K M R L E V L C V A C C - L C - W R T E R - D F E K S C V W H A A D F A D G E L K D E T . . . : . . . 6231 TTTGCATCCGCTTTGCTTCAGTTGAGA : ATTGCAAGGCTTTCAAAGAGAAGGTTGAAGAAA F A S A L L Q L R : I A R L S K R R L K K L H P L C F S - E : L Q G F Q R E G - R N F C I R F A S V E : N C K A F K E K V E E . . . . . . 7217 TTGCTGAATCTCAACAGACAAAGTCTGGACAAAGTGAAGAAGCTGGTGCTGCTGCTACTG L L N L N R Q S L D K V K K L V L L L L C - I S T D K V W T K - R S W C C C Y - I A E S Q Q T K S G Q S E E A G A A A T . . . . . . 7277 AACTTATTGAAAAGCTTAGTGTTGAAAGCAAAGATAAAAATGACAAACCTGAAGACAAAG N L L K S L V L K A K I K M T N L K T K T Y - K A - C - K Q R - K - Q T - R Q R E L I E K L S V E S K D K N D K P E D K . . . . . . 7337 AGGCCCCTGCAGCTACAGAGGAAAAGGAAGATAAGAAGGAAGAGAAAGCTGAAGAAAAGA R P L Q L Q R K R K I R R K R K L K K R G P C S Y R G K G R - E G R E S - R K E E A P A A T E E K E D K K E E K A E E K . . . . . . 7397 ATTAAAATGTTTGTATTGTCGGTCAGTTTTTTTTTTTTGAAAGGTTAATAGCATTCGTTG I K M F V L S V S F F F L K G - - H S L L K C L Y C R S V F F F - K V N S I R C N - N V C I V G Q F F F F E R L I A F V . . . . . . 7457 TTTCTGTCTGATCCAATAGATATGATAGATATAAGCAATGTGTCTCTTGTGGTCTTATTT F L S D P I D M I D I S N V S L V V L F F C L I Q - I - - I - A M C L L W S Y L V S V - S N R Y D R Y K Q C V S C G L I . . . . . . 7517 GTTGTTGTTGGGATGGTTTGGATTTTCATTTGGGTCTTGAGTCGAGTGCAGCTTCATGTT V V V G M V W I F I W V L S R V Q L H V L L L G W F G F S F G S - V E C S F M F C C C W D G L D F H L G L E S S A A S C . . . . . . 7577 TTATTGTGGTCTTTGGTGTTTCCTTGTACTTATTTATTGTGTGTTTGCAAATTTTGGTTC L L W S L V F P C T Y L L C V C K F W F Y C G L W C F L V L I Y C V F A N F G S F I V V F G V S L Y L F I V C L Q I L V . . . . . 7637 ATGGGGGTACACCACCCAGTATAAGGGATTACGTTTGTTAAAACCTTTA M G V H H P V - G I T F V K T F W G Y T T Q Y K G L R L L K P L H G G T P P S I R D Y V C - N L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1+_PGL-1_AGS-1_PPS_1 (4878 5074,5858 6009,6132 6257,7184 7401) (frame '0'; 690 bp, 230 residues) 1 NQKSRVMAST TVEPKLEKKE EEVEAEVEEN PTGDDEDTGA QVAPIVRLQE VAVSTGEENE 61 HVLLDLKSKL YRFDKEGSQW KERGVGTVKL LKHKETGKVR LVMRQSKTLK ICANHLVLPT 121 MSIQEHAGNE KSCVWHAADF ADGELKDETF CIRFASVENC KAFKEKVEEI AESQQTKSGQ 181 SEEAGAAATE LIEKLSVESK DKNDKPEDKE APAATEEKED KKEEKAEEKN - >C08HBa0167P18.1+_PGL-1_AGS-1_PPS_2 (7448 7660) (frame '1'; 210 bp, 70 residues) 1 HSLFLSDPID MIDISNVSLV VLFVVVGMVW IFIWVLSRVQ LHVLLWSLVF PCTYLLCVCK 61 FWFMGVHHPV - PGL 2 (- strand): 24726 8479 AGS-1 (24726 24681,21165 20924,20752 20509,20023 19944,16127 16043,15479 15348,15265 15152,13085 13038,9968 9884,9107 9057,8982 8479) SCR (e 1.000 d 0.997 a 0.995,e 1.000 d 0.999 a 1.000,e 1.000 d 0.991 a 0.943,e 1.000 d 0.000 a 0.988,e 1.000 d 0.990 a 0.845,e 1.000 d 0.998 a 0.950,e 1.000 d 0.992 a 0.993,e 1.000 d 0.999 a 0.000,e 1.000 d 1.000 a 0.872,e 1.000 d 0.978 a 0.989,e 0.994) Exon 1 24726 24681 ( 46 n); score: 1.000 Intron 1 24680 21166 (3515 n); Pd: 0.997 Pa: 0.995 Exon 2 21165 20924 ( 242 n); score: 1.000 Intron 2 20923 20753 ( 171 n); Pd: 0.999 Pa: 1.000 Exon 3 20752 20509 ( 244 n); score: 1.000 Intron 3 20508 20024 ( 485 n); Pd: 0.991 Pa: 0.943 Exon 4 20023 19944 ( 80 n); score: 1.000 Intron 4 19943 16128 (3816 n); Pd: 0.000 Pa: 0.988 Exon 5 16127 16043 ( 85 n); score: 1.000 Intron 5 16042 15480 ( 563 n); Pd: 0.990 Pa: 0.845 Exon 6 15479 15348 ( 132 n); score: 1.000 Intron 6 15347 15266 ( 82 n); Pd: 0.998 Pa: 0.950 Exon 7 15265 15152 ( 114 n); score: 1.000 Intron 7 15151 13086 (2066 n); Pd: 0.992 Pa: 0.993 Exon 8 13085 13038 ( 48 n); score: 1.000 Intron 8 13037 9969 (3069 n); Pd: 0.999 Pa: 0.000 Exon 9 9968 9884 ( 85 n); score: 1.000 Intron 9 9883 9108 ( 776 n); Pd: 1.000 Pa: 0.872 Exon 10 9107 9057 ( 51 n); score: 1.000 Intron 10 9056 8983 ( 74 n); Pd: 0.978 Pa: 0.989 Exon 11 8982 8479 ( 504 n); score: 0.994 PGS (13085 13038,9968 9884,9107 9057,8982 8479) SGN-E538024- PGS (15202 15152,13085 13038,9968 9884,9107 9057,8982 8577) SGN-E297605+ PGS (15352 15348,15265 15152,13085 13038,9968 9884,9107 9057,8982 8750) SGN-E327016+ PGS (20586 20509,20023 19944,16127 16043,15479 15348,15265 15152,13085 13054) SGN-E267033+ PGS (24726 24681,21165 20924,20752 20509,20023 19944,16127 16043,15479 15419) SGN-E538026+ PGS (24725 24681,21165 20924,20752 20551) SGN-E267709+ 3-phase translation of AGS-1 (-strand): . . . . . : . 24726 TGCCATGAAGAAGTTAAAGAAATCTGAAATGCTCATCAGAGGACAG : GTGGAGCATGTGAG C H E E V K E I - N A H Q R T : G G A C E A M K K L K K S E M L I R G Q : V E H V R P - R S - R N L K C S S E D R : W S M - . . . . . . 21151 AGCTGAAAGAAATTTATTGGCAGAAGTGGCCAGCCATTGTATTGTAAAATTATACTACTC S - K K F I G R S G Q P L Y C K I I L L A E R N L L A E V A S H C I V K L Y Y S E L K E I Y W Q K W P A I V L - N Y T T . . . . . . 21091 ATTCCAAGATGCTGAATATCTCTACCTTGTCATGGAGTATCTTCCTGGCGGTGACATGAT I P R C - I S L P C H G V S S W R - H D F Q D A E Y L Y L V M E Y L P G G D M M H S K M L N I S T L S W S I F L A V T - . . . . . . 21031 GACTCTGCTGATGAGAGAAGATACATTGTCTGAAAGTGTAGCTAAATTTTATATTGGTCA D S A D E R R Y I V - K C S - I L Y W S T L L M R E D T L S E S V A K F Y I G Q - L C - - E K I H C L K V - L N F I L V . . . . . : . 20971 GAGTGTCCTAGCTATAGAGTCTATTCACAAGCATCATTACATTCACAG : AGATATCAAACC E C P S Y R V Y S Q A S L H S Q : R Y Q T S V L A I E S I H K H H Y I H R : D I K P R V S - L - S L F T S I I T F T : E I S N . . . . . . 20740 TGACAACCTTCTTTTGGACAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAA - Q P S F G Q K W S H E A L - F W S L - D N L L L D K N G H M K L S D F G L C K L T T F F W T K M V T - S S L I L V S V . . . . . . 20680 GCCTCTTGATTGTAGAACGTTATCCACATTAAAAGAAAATGAAGCTATGGATGATGAGAA A S - L - N V I H I K R K - S Y G - - E P L D C R T L S T L K E N E A M D D E N S L L I V E R Y P H - K K M K L W M M R . . . . . . 20620 TATAAAGGATCCTATGGATATAGATAGCAGCTTCCCAGATACCAATGATGGAAATAAGTG Y K G S Y G Y R - Q L P R Y Q - W K - V I K D P M D I D S S F P D T N D G N K W I - R I L W I - I A A S Q I P M M E I S . . . . . . : 20560 GAAAACCCCCCGCGAAAAGCTTCATCATTGGCAGATAAACAGAAGGAAATTG : GCCTTTTC E N P P R K A S S L A D K Q K E I : G L F K T P R E K L H H W Q I N R R K L : A F S G K P P A K S F I I G R - T E G N W : P F . . . . . . 20015 AACTGTCGGTACACCAGACTATATTGCTCCTGAGGTACTATTGAAGAAAGGATATGGAAT N C R Y T R L Y C S - G T I E E R I W N T V G T P D Y I A P E V L L K K G Y G M Q L S V H Q T I L L L R Y Y - R K D M E . . : . . . . 19955 GGAATGTGATTG : GTGGTCCCTTGGTGCAATTATGTACGAAATGCTCATTGGTTACCCTCC G M - L : V V P W C N Y V R N A H W L P S E C D W : W S L G A I M Y E M L I G Y P P W N V I : G G P L V Q L C T K C S L V T L . . . . : . . 16079 ATTCTATGCCGATGATCCGATAACTACTTGCAGAAAG : ATAGTTCACTGGAGAAATCACCT I L C R - S D N Y L Q K : D S S L E K S P F Y A D D P I T T C R K : I V H W R N H L H S M P M I R - L L A E R : - F T G E I T . . . . . . 15456 AAGATTTCCTGAAGATACTAAACTCTCACATGAGGCAAAGGATCTTATTTGCAGGTTACT K I S - R Y - T L T - G K G S Y L Q V T R F P E D T K L S H E A K D L I C R L L - D F L K I L N S H M R Q R I L F A G Y . . . . . : . 15396 ATGTGATGTTGAGCATAGACTGGGAACTGGAGGTGCAAACCAAATAAAG : GCTCATCCTTG M - C - A - T G N W R C K P N K : G S S L C D V E H R L G T G G A N Q I K : A H P W Y V M L S I D W E L E V Q T K - R : L I L . . . . . . 15254 GTTCAAGGATATTGAATGGGATAGGCTGTATGAAATGGAAGCAGCCTTCAAACCAGAAGT V Q G Y - M G - A V - N G S S L Q T R S F K D I E W D R L Y E M E A A F K P E V G S R I L N G I G C M K W K Q P S N Q K . . . . . : . 15194 TAATGGAGAGCTGGACACCCAGAATTTCATGAAGTATGATGAG : ATGGATACTCCAACATC - W R A G H P E F H E V - - : D G Y S N I N G E L D T Q N F M K Y D E : M D T P T S L M E S W T P R I S - S M M R : W I L Q H . . . . : . . 13068 AGCAAGATCTGGTTCAGGACCTTCTCGGAAG : ATGTCATTAACTCCCAAAGATTTAAGTTT S K I W F R T F S E : D V I N S Q R F K F A R S G S G P S R K : M S L T P K D L S F Q Q D L V Q D L L G R : C H - L P K I - V . . . . . . : 9939 TGTGGGCTATACATACAAAAACTTTGATGCTGTCAAGGCACTGCGCAACTCTTCCG : ATCC C G L Y I Q K L - C C Q G T A Q L F R : S V G Y T Y K N F D A V K A L R N S S : D P L W A I H T K T L M L S R H C A T L P : I . . . . . : . 9103 TACAAGGGACACATCACCTAGGCGGCCGTCAATTGATTCCATATTCA : ATAATTCTAAGGA Y K G H I T - A A V N - F H I Q : - F - G T R D T S P R R P S I D S I F : N N S K D L Q G T H H L G G R Q L I P Y S : I I L R . . . . . . 8969 CTATCCTTCAACAAAGGGAACAAGTGGAGAAATAGACACAGATATGATAACGTCAACCGG L S F N K G N K W R N R H R Y D N V N R Y P S T K G T S G E I D T D M I T S T G T I L Q Q R E Q V E K - T Q I - - R Q P . . . . . . 8909 TTGTGCAATATCTCCATGATATCGCCAGAGCTTTATATTGAAAAAGAAACTAGCAAAGGT L C N I S M I S P E L Y I E K E T S K G C A I S P - Y R Q S F I L K K K L A K V V V Q Y L H D I A R A L Y - K R N - Q R . . . . . . 8849 GGTGGTAGCATACACCTGTTGTATTTGATCAGGTTGTTCACCCCTTCATCAGCATTCCAA G G S I H L L Y L I R L F T P S S A F Q V V A Y T C C I - S G C S P L H Q H S K W W - H T P V V F D Q V V H P F I S I P . . . . . . 8789 GTGTGTTTGGCACCATGATATAAGTGTACAGTTAATGCTTGAGAAACTTGGTTGATTCGT V C L A P - Y K C T V N A - E T W L I R C V W H H D I S V Q L M L E K L G - F V S V F G T M I - V Y S - C L R N L V D S . . . . . . 8729 AGGACATGGAAACTGTTGTAGGAAATGTAATGTTTGTGCAATAGAAACTTAGACTGCTTA R T W K L L - E M - C L C N R N L D C L G H G N C C R K C N V C A I E T - T A - - D M E T V V G N V M F V Q - K L R L L . . . . . . 8669 ATATCGTCCATTGCCCAGGTTGGCAATCAAATGCTAACTCTTGTGGCAATTGCTGGTCAG I S S I A Q V G N Q M L T L V A I A G Q Y R P L P R L A I K C - L L W Q L L V R N I V H C P G W Q S N A N S C G N C W S . . . . . . 8609 ATGAAATTTATTACTTCTGGGACCAATTATGCTGTGGTTCCTTTTTTAAATATATGGGCA M K F I T S G T N Y A V V P F L N I W A - N L L L L G P I M L W F L F - I Y G Q D E I Y Y F W D Q L C C G S F F K Y M G . . . . . . 8549 AAACTTTGTTCATAAATATTGCAACCCCCATTGTATCTTATCTTTTGGTTATGATAGAGG K L C S - I L Q P P L Y L I F W L - - R N F V H K Y C N P H C I L S F G Y D R G K T L F I N I A T P I V S Y L L V M I E . . 8489 CTTTTCAGTAA L F S F S V A F Q - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1-_PGL-2_AGS-1_PPS_1 (24725 24681,21165 20924,20752 20509,20023 19944,16127 16043,15479 15348,15265 15152,13085 13038,9968 9884,9107 9057,8982 8891) (frame '2'; 1215 bp, 405 residues) 1 AMKKLKKSEM LIRGQVEHVR AERNLLAEVA SHCIVKLYYS FQDAEYLYLV MEYLPGGDMM 61 TLLMREDTLS ESVAKFYIGQ SVLAIESIHK HHYIHRDIKP DNLLLDKNGH MKLSDFGLCK 121 PLDCRTLSTL KENEAMDDEN IKDPMDIDSS FPDTNDGNKW KTPREKLHHW QINRRKLAFS 181 TVGTPDYIAP EVLLKKGYGM ECDWWSLGAI MYEMLIGYPP FYADDPITTC RKIVHWRNHL 241 RFPEDTKLSH EAKDLICRLL CDVEHRLGTG GANQIKAHPW FKDIEWDRLY EMEAAFKPEV 301 NGELDTQNFM KYDEMDTPTS ARSGSGPSRK MSLTPKDLSF VGYTYKNFDA VKALRNSSDP 361 TRDTSPRRPS IDSIFNNSKD YPSTKGTSGE IDTDMITSTG CAISP- >C08HBa0167P18.1-_PGL-2_AGS-1_PPS_2 (8685 8479) (frame '0'; 204 bp, 68 residues) 1 KLRLLNIVHC PGWQSNANSC GNCWSDEIYY FWDQLCCGSF FKYMGKTLFI NIATPIVSYL 61 LVMIEAFQ- PGL 3 (+ strand): 26538 28935 AGS-1 (26538 26564,26599 26954,27370 27374,27501 27520,28908 28935) SCR (e 0.833 d 0.000 a 0.000,e 0.869 d 0.000 a 0.995,e 0.600 d 0.000 a 0.572,e 0.550 d 0.000 a 0.793,e 0.732) Exon 1 26538 26564 ( 27 n); score: 0.833 Intron 1 26565 26598 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 2 26599 26954 ( 356 n); score: 0.869 Intron 2 26955 27369 ( 415 n); Pd: 0.000 Pa: 0.995 Exon 3 27370 27374 ( 5 n); score: 0.600 Intron 3 27375 27500 ( 126 n); Pd: 0.000 Pa: 0.572 Exon 4 27501 27520 ( 20 n); score: 0.550 Intron 4 27521 28907 (1387 n); Pd: 0.000 Pa: 0.793 Exon 5 28908 28935 ( 28 n); score: 0.732 PGS (26538 26564,26599 26870) SGN-E204223+ PGS (26538 26564,26599 26844) SGN-E374844+ PGS (26611 26949) SGN-E253695- PGS (26669 26949) SGN-E249253- PGS (26693 26954,27370 27374,27501 27520,28908 28935) SGN-E242674+ PGS (26693 26954,27370 27374,27501 27520,28908 28935) SGN-E233074+ PGS (26693 26954,27370 27374,27501 27520,28908 28935) SGN-E233735+ PGS (26693 26954,27370 27374,27501 27520,28908 28935) SGN-E377238+ PGS (26693 26954,27370 27374,27501 27520,28908 28935) SGN-E240879+ PGS (26693 26954) SGN-E233594+ PGS (26694 26954,27370 27374,27501 27520,28908 28935) SGN-E237992+ PGS (26821 26952) SGN-E376754+ PGS (26846 26950) SGN-E577960- PGS (26893 26956) SGN-E256217+ 3-phase translation of AGS-1 (+strand): . . . : . . . 26538 ATATTTAGGGCCCGTTTGGATGGCTTA : GCTGAAACTTATTTTTAAAATAAACAGTTTTGC I F R A R L D G L : A E T Y F - N K Q F C Y L G P V W M A - : L K L I F K I N S F A I - G P F G W L : S - N L F L K - T V L . . . . . . 26632 GTTTGGATAAAAGTGCTGAAATTGCTATGTCAAACGTGAAAAGGGAAAAATGGAAGAAAG V W I K V L K L L C Q T - K G K N G R K F G - K C - N C Y V K R E K G K M E E R R L D K S A E I A M S N V K R E K W K K . . . . . . 26692 AGATGTTAGGGTTATGTGGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGAT R C - G Y V G N L E I V - K Y - G Q K D D V R V M W V I W R L Y K N I K G K K I E M L G L C G - F G D C I K I L R A K R . . . . . . 26752 AAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAAAAGCACCCCTACCCCA K N V V N L K Q L I S - K K K S T P T P K M W S T - N S L - A K K K K A P L P H - K C G Q L K T A Y K L K K K K H P Y P . . . . . . 26812 TCTTTTAACTTTTGACTTAAAATAAGTTTTTTTGAACCTAAAATAAGTTATTTTGAGTAT S F N F - L K I S F F E P K I S Y F E Y L L T F D L K - V F L N L K - V I L S I I F - L L T - N K F F - T - N K L F - V . . . . . . 26872 TGTAAAACAGCTAAATAAGTCAAAACCAGCTTTTAAGTCAGTTTGATCAGCTTTTAAGCT C K T A K - V K T S F - V S L I S F - A V K Q L N K S K P A F K S V - S A F K L L - N S - I S Q N Q L L S Q F D Q L L S . . . : : . . : . 26932 GAGCCAAACAGGCTCTTAGAGAA : CAATG : GCATCTCATACGTGTTCCTA : CTTCAAATATCA E P N R L L E N : N : G I S Y V F L : L Q I S S Q T G S - R : T M : A S H T C S Y : F K Y Q - A K Q A L R E : Q W : H L I R V P : T S N I . . 28920 GCAATGTAAGTTTGAG A M - V - Q C K F E S N V S L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (26539 26795) SCR (e 0.932) Exon 1 26539 26795 ( 257 n); score: 0.932 PGS (26539 26795) SGN-E578392+ 3-phase translation of AGS-2 (+strand): . . . . . . 26539 TATTTAGGGCCCGTTTGGATGGCTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGT Y L G P V W M A - - K Q L - K S I F E S I - G P F G W L N K S S F K K V F L K V F R A R L D G L I K A A L K K Y F - K . . . . . . 26599 GCTGAAACTTATTTTTAAAATAAACAGTTTTGCGTTTGGATAAAAGTGCTGAAATTGCTA A E T Y F - N K Q F C V W I K V L K L L L K L I F K I N S F A F G - K C - N C Y C - N L F L K - T V L R L D K S A E I A . . . . . . 26659 TGTCAAACGTGAAAAGGGAAAAATGGAAGAAAGAGATGTTAGGGTTATGTGGGTAATTTG C Q T - K G K N G R K R C - G Y V G N L V K R E K G K M E E R D V R V M W V I W M S N V K R E K W K K E M L G L C G - F . . . . . . 26719 GAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTT E I V - K Y - G Q K D K N V V N L K Q L R L Y K N I K G K K I K M W S T - N S L G D C I K I L R A K R - K C G Q L K T A . . 26779 ATAAGCTAAAAAAAAAA I S - K K - A K K K Y K L K K K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 26795 TTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCCCTTAA F F F - L I S C F K L T T F L S F C P - F F F S L - A V L S - P H F Y L F A L N F F L A Y K L F - V D H I F I F L P L . . . . . . 26735 TATTTTTATACAATCTCCAAATTACCCACATAACCCTAACATCTCTTTCTTCCATTTTTC Y F Y T I S K L P T - P - H L F L P F F I F I Q S P N Y P H N P N I S F F H F S I F L Y N L Q I T H I T L T S L S S I F . . . . . . 26675 CCTTTTCACGTTTGACATAGCAATTTCAGCACTTTTATCCAAACGCAAAACTGTTTATTT P F H V - H S N F S T F I Q T Q N C L F L F T F D I A I S A L L S K R K T V Y F P F S R L T - Q F Q H F Y P N A K L F I . . . . . . 26615 TAAAAATAAGTTTCAGCACTTTCAAAAATACTTTTTTAAAGCTGCTTTTATTAAGCCATC - K - V S A L S K I L F - S C F Y - A I K N K F Q H F Q K Y F F K A A F I K P S L K I S F S T F K N T F L K L L L L S H . . 26555 CAAACGGGCCCTAAATA Q T G P K K R A L N P N G P - I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1-_PGL-3_AGS-2_PPS_1 (26761 26540) (frame '2'; 222 bp, 74 residues) 1 PHFYLFALNI FIQSPNYPHN PNISFFHFSL FTFDIAISAL LSKRKTVYFK NKFQHFQKYF 61 FKAAFIKPSK RALN PGL 4 (- strand): 32952 32392 AGS-1 (32952 32392) SCR (e 0.817) Exon 1 32952 32392 ( 561 n); score: 0.817 PGS (32952 32392) SGN-E312750+ 3-phase translation of AGS-1 (-strand): . . . . . . 32952 GATCTAGTAGTAGAACCGTGCACACTCACAATACCTATAACCCGGATTGTACTTTTCAAA D L V V E P C T L T I P I T R I V L F K I - - - N R A H S Q Y L - P G L Y F S N S S S R T V H T H N T Y N P D C T F Q . . . . . . 32892 TGATGCATTTTATAATTGCGTAATTTAAGAAAATTGATGTGAACTTTTTCATTTTTATAA - C I L - L R N L R K L M - T F S F L - D A F Y N C V I - E N - C E L F H F Y K M M H F I I A - F K K I D V N F F I F I . . . . . . 32832 AATCGACCGAATTGATTGGTTTTAATATTTTTACTTGCCAATTAATGAATGGATTCTGCC N R P N - L V L I F L L A N - - M D S A I D R I D W F - Y F Y L P I N E W I L P K S T E L I G F N I F T C Q L M N G F C . . . . . . 32772 TACTTTTTATGAAGCACTTGTATTATTCTTTTTATAAGTCGTCACTTGTAATTATGAAAA Y F L - S T C I I L F I S R H L - L - K T F Y E A L V L F F L - V V T C N Y E K L L F M K H L Y Y S F Y K S S L V I M K . . . . . . 32712 ATTGTAGAAAAAAAATTGTATTTAGTTATGATTTTTTTTGTAGCAAATAATTTAACTATT I V E K K L Y L V M I F F V A N N L T I L - K K N C I - L - F F L - Q I I - L F N C R K K I V F S Y D F F C S K - F N Y . . . . . . 32652 CACTACAAATTTTAAGTCGTCGCTATTTAACACCTGACATATTTTGTGACAATTTTTTTG H Y K F - V V A I - H L T Y F V T I F L T T N F K S S L F N T - H I L - Q F F C S L Q I L S R R Y L T P D I F C D N F F . . . . . . 32592 CTGTAACTAAATTATAGATTGATTAGACACAATATAATATTTGACACCTATTATTTATAT L - L N Y R L I R H N I I F D T Y Y L Y C N - I I D - L D T I - Y L T P I I Y I A V T K L - I D - T Q Y N I - H L L F I . . . . . . 32532 TGTTAGTGAGGAAATAAATTTCATAATTAAATATAAATTTTCATAGCTAAAATTTATAAT C - - G N K F H N - I - I F I A K I Y N V S E E I N F I I K Y K F S - L K F I I L L V R K - I S - L N I N F H S - N L - . . . . . . 32472 ATTTGACTATGAACTCTAATTTGTCGATATTGTAACAACATATTTTTTTAGATAAAATTT I - L - T L I C R Y C N N I F F - I K F F D Y E L - F V D I V T T Y F F R - N F Y L T M N S N L S I L - Q H I F L D K I . . . 32412 TTTGTGTCCAAATTTAATAAA F V S K F N K L C P N L I F C V Q I - - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1-_PGL-4_AGS-1_PPS_1 (32869 32663) (frame '0'; 204 bp, 68 residues) 1 FKKIDVNFFI FIKSTELIGF NIFTCQLMNG FCLLFMKHLY YSFYKSSLVI MKNCRKKIVF 61 SYDFFCSK- 3-phase translation of AGS-1 (+strand): . . . . . . 32392 TTTATTAAATTTGGACACAAAAAATTTTATCTAAAAAAATATGTTGTTACAATATCGACA F I K F G H K K F Y L K K Y V V T I S T L L N L D T K N F I - K N M L L Q Y R Q Y - I W T Q K I L S K K I C C Y N I D . . . . . . 32452 AATTAGAGTTCATAGTCAAATATTATAAATTTTAGCTATGAAAATTTATATTTAATTATG N - S S - S N I I N F S Y E N L Y L I M I R V H S Q I L - I L A M K I Y I - L - K L E F I V K Y Y K F - L - K F I F N Y . . . . . . 32512 AAATTTATTTCCTCACTAACAATATAAATAATAGGTGTCAAATATTATATTGTGTCTAAT K F I S S L T I - I I G V K Y Y I V S N N L F P H - Q Y K - - V S N I I L C L I E I Y F L T N N I N N R C Q I L Y C V - . . . . . . 32572 CAATCTATAATTTAGTTACAGCAAAAAAATTGTCACAAAATATGTCAGGTGTTAAATAGC Q S I I - L Q Q K N C H K I C Q V L N S N L - F S Y S K K I V T K Y V R C - I A S I Y N L V T A K K L S Q N M S G V K - . . . . . . 32632 GACGACTTAAAATTTGTAGTGAATAGTTAAATTATTTGCTACAAAAAAAATCATAACTAA D D L K F V V N S - I I C Y K K N H N - T T - N L - - I V K L F A T K K I I T K R R L K I C S E - L N Y L L Q K K S - L . . . . . . 32692 ATACAATTTTTTTTCTACAATTTTTCATAATTACAAGTGACGACTTATAAAAAGAATAAT I Q F F F Y N F S - L Q V T T Y K K N N Y N F F S T I F H N Y K - R L I K R I I N T I F F L Q F F I I T S D D L - K E - . . . . . . 32752 ACAAGTGCTTCATAAAAAGTAGGCAGAATCCATTCATTAATTGGCAAGTAAAAATATTAA T S A S - K V G R I H S L I G K - K Y - Q V L H K K - A E S I H - L A S K N I K Y K C F I K S R Q N P F I N W Q V K I L . . . . . . 32812 AACCAATCAATTCGGTCGATTTTATAAAAATGAAAAAGTTCACATCAATTTTCTTAAATT N Q S I R S I L - K - K S S H Q F S - I T N Q F G R F Y K N E K V H I N F L K L K P I N S V D F I K M K K F T S I F L N . . . . . . 32872 ACGCAATTATAAAATGCATCATTTGAAAAGTACAATCCGGGTTATAGGTATTGTGAGTGT T Q L - N A S F E K Y N P G Y R Y C E C R N Y K M H H L K S T I R V I G I V S V Y A I I K C I I - K V Q S G L - V L - V . . . 32932 GCACGGTTCTACTACTAGATC A R F Y Y - I H G S T T R C T V L L L D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 34484 35144 AGS-1 (34484 35144) SCR (e 0.826) Exon 1 34484 35144 ( 661 n); score: 0.826 PGS (34484 35144) SGN-E352364+ 3-phase translation of AGS-1 (+strand): . . . . . . 34484 GAAACTCACATATACCTCCTTCAATACACACCAAAGTGACCCTCAAGACTACCTCTTTTT E T H I Y L L Q Y T P K - P S R L P L F K L T Y T S F N T H Q S D P Q D Y L F F N S H I P P S I H T K V T L K T T S F . . . . . . 34544 TGGCTTACTCACCTCGGGAGAACAAGCACCCACACAATGACAAAACATTAGAAGAACACT W L T H L G R T S T H T M T K H - K N T G L L T S G E Q A P T Q - Q N I R R T L L A Y S P R E N K H P H N D K T L E E H . . . . . . 34604 CAAGCAACACCAAAAGACTTCTTCGGAATGCCTACTTAGTGCAATGAGTAGATGGTGTCT Q A T P K D F F G M P T - C N E - M V S K Q H Q K T S S E C L L S A M S R W C L S S N T K R L L R N A Y L V Q - V D G V . . . . . . 34664 CATTCCACCACCTACCCTAAGTAGTACACTCTTTTAGAAGGCTTAGCACCAAAACTCCCC H S T T Y P K - Y T L L E G L A P K L P I P P P T L S S T L F - K A - H Q N S P S F H H L P - V V H S F R R L S T K T P . . . . . . 34724 TTTCGGAAGGTCTACTTAGAGCAATGGATAGATAGGGCCCATTCCACCACCTACCCTAAG F R K V Y L E Q W I D R A H S T T Y P K F G R S T - S N G - I G P I P P P T L S L S E G L L R A M D R - G P F H H L P - . . . . . . 34784 TAGTACGTTCTTTTAGGAGACTTAGTTCATTCAATTCATATAAGACTCACCAACACTCCC - Y V L L G D L V H S I H I R L T N T P S T F F - E T - F I Q F I - D S P T L P V V R S F R R L S S F N S Y K T H Q H S . . . . . . 34844 CTTTCGGAATGCCTACCTAGTGCAATGGATAAATAGCGTCTCATTCCACTACCTACCCTA L S E C L P S A M D K - R L I P L P T L F R N A Y L V Q W I N S V S F H Y L P - P F G M P T - C N G - I A S H S T T Y P . . . . . . 34904 AGTGGTACACTCTTTTAGAAGACTTAGCATTTTCATTACTTTTGTAGGGGTTAGCTTAAT S G T L F - K T - H F H Y F C R G - L N V V H S F R R L S I F I T F V G V S L I K W Y T L L E D L A F S L L L - G L A - . . . . . . 34964 CGACTTAGACCATGAGAGCTAGACATGGAATCCTGATATTAACCCTATCGGATGAGGGAT R L R P - E L D M E S - Y - P Y R M R D D L D H E S - T W N P D I N P I G - G I S T - T M R A R H G I L I L T L S D E G . . . . . . 35024 CCTCACTTGCCTAGAGTAAGGTCATTCTCTTAGCTTTTACATGGCTTTCCTAATAGCTAC P H L P R V R S F S - L L H G F P N S Y L T C L E - G H S L S F Y M A F L I A T S S L A - S K V I L L A F T W L S - - L . . . . . . 35084 ACCTATGCGGGGGCATAGTTAAGGGATAAGGAAATTGCTGGTAAGTAACTCATTCTCTAC T Y A G A - L R D K E I A G K - L I L Y P M R G H S - G I R K L L V S N S F S T H L C G G I V K G - G N C W - V T H S L . 35144 T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 35144 AGTAGAGAATGAGTTACTTACCAGCAATTTCCTTATCCCTTAACTATGCCCCCGCATAGG S R E - V T Y Q Q F P Y P L T M P P H R V E N E L L T S N F L I P - L C P R I G - R M S Y L P A I S L S L N Y A P A - . . . . . . 35084 TGTAGCTATTAGGAAAGCCATGTAAAAGCTAAGAGAATGACCTTACTCTAGGCAAGTGAG C S Y - E S H V K A K R M T L L - A S E V A I R K A M - K L R E - P Y S R Q V R V - L L G K P C K S - E N D L T L G K - . . . . . . 35024 GATCCCTCATCCGATAGGGTTAATATCAGGATTCCATGTCTAGCTCTCATGGTCTAAGTC D P S S D R V N I R I P C L A L M V - V I P H P I G L I S G F H V - L S W S K S G S L I R - G - Y Q D S M S S S H G L S . . . . . . 34964 GATTAAGCTAACCCCTACAAAAGTAATGAAAATGCTAAGTCTTCTAAAAGAGTGTACCAC D - A N P Y K S N E N A K S S K R V Y H I K L T P T K V M K M L S L L K E C T T R L S - P L Q K - - K C - V F - K S V P . . . . . . 34904 TTAGGGTAGGTAGTGGAATGAGACGCTATTTATCCATTGCACTAGGTAGGCATTCCGAAA L G - V V E - D A I Y P L H - V G I P K - G R - W N E T L F I H C T R - A F R K L R V G S G M R R Y L S I A L G R H S E . . . . . . 34844 GGGGAGTGTTGGTGAGTCTTATATGAATTGAATGAACTAAGTCTCCTAAAAGAACGTACT G E C W - V L Y E L N E L S L L K E R T G S V G E S Y M N - M N - V S - K N V L R G V L V S L I - I E - T K S P K R T Y . . . . . . 34784 ACTTAGGGTAGGTGGTGGAATGGGCCCTATCTATCCATTGCTCTAAGTAGACCTTCCGAA T - G R W W N G P Y L S I A L S R P S E L R V G G G M G P I Y P L L - V D L P K Y L G - V V E W A L S I H C S K - T F R . . . . . . 34724 AGGGGAGTTTTGGTGCTAAGCCTTCTAAAAGAGTGTACTACTTAGGGTAGGTGGTGGAAT R G V L V L S L L K E C T T - G R W W N G E F W C - A F - K S V L L R V G G G M K G S F G A K P S K R V Y Y L G - V V E . . . . . . 34664 GAGACACCATCTACTCATTGCACTAAGTAGGCATTCCGAAGAAGTCTTTTGGTGTTGCTT E T P S T H C T K - A F R R S L L V L L R H H L L I A L S R H S E E V F W C C L - D T I Y S L H - V G I P K K S F G V A . . . . . . 34604 GAGTGTTCTTCTAATGTTTTGTCATTGTGTGGGTGCTTGTTCTCCCGAGGTGAGTAAGCC E C S S N V L S L C G C L F S R G E - A S V L L M F C H C V G A C S P E V S K P - V F F - C F V I V W V L V L P R - V S . . . . . . 34544 AAAAAAGAGGTAGTCTTGAGGGTCACTTTGGTGTGTATTGAAGGAGGTATATGTGAGTTT K K E V V L R V T L V C I E G G I C E F K K R - S - G S L W C V L K E V Y V S F Q K R G S L E G H F G V Y - R R Y M - V . 34484 C Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (- strand): 43470 42730 AGS-1 (43470 42730) SCR (e 0.813) Exon 1 43470 42730 ( 741 n); score: 0.813 PGS (43224 42730) SGN-E541821- PGS (43470 43139) SGN-E243101- PGS (43470 43196) SGN-E539191+ 3-phase translation of AGS-1 (-strand): . . . . . . 43470 GCGCCGCGATGGAACTATATTTTGAGGGACCTATCGCACGCAGCGATAGATGCATTGACA A P R W N Y I L R D L S H A A I D A L T R R D G T I F - G T Y R T Q R - M H - Q A A M E L Y F E G P I A R S D R C I D . . . . . . 43410 GATATGTCCCCCATGGGTCCCAAACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACA D M S P M G P K L R D S G C V S L G Q T I C P P W V P N - E T A G V Y H - V R H R Y V P H G S Q T E R Q R V C I T R S D . . . . . . 43350 TGCATCATTATACTTGACATCGTATTCCATTGCATTGCACATACTTATCATTAGTGAAAT C I I I L D I V F H C I A H T Y H - - N A S L Y L T S Y S I A L H I L I I S E I M H H Y T - H R I P L H C T Y L S L V K . . . . . . 43290 TGATATTATGTTTTGCTGATCTTGTGAATGCATTTCTGCGAAACTTGTGATTGATGAATA - Y Y V L L I L - M H F C E T C D - - I D I M F C - S C E C I S A K L V I D E Y L I L C F A D L V N A F L R N L - L M N . . . . . . 43230 CTGAGCTTGTTGTTGAGGATATATAATTTGTTGAAGTGTTTTTGTTGAGGATATGTAATT L S L L L R I Y N L L K C F C - G Y V I - A C C - G Y I I C - S V F V E D M - F T E L V V E D I - F V E V F L L R I C N . . . . . . 43170 TGTCAAAGTGTTGTTGTGGAGAATATATAATTGTCTAAGTGTTGTTGTGGATAATATGTG C Q S V V V E N I - L S K C C C G - Y V V K V L L W R I Y N C L S V V V D N M C L S K C C C G E Y I I V - V L L W I I C . . . . . . 43110 CTATGTAAACTGTGAGTTGTTAGGTTGGGCTGATTCTTTTGTGTAGGTTGTAGTCGTGGA L C K L - V V R L G - F F C V G C S R G Y V N C E L L G W A D S F V - V V V V E A M - T V S C - V G L I L L C R L - S W . . . . . . 43050 GGTTCGGTTGGGGTAGTAGGAGTACCCCTATGTCACCCCCCTTAGCTTGTGTTTAGAGGT G S V G V V G V P L C H P P - L V F R G V R L G - - E Y P Y V T P L S L C L E V R F G W G S R S T P M S P P L A C V - R . . . . . . 42990 TTACTTGATGAGTACCGTGTGGTTTGGTACTCATTCCTTGCTTCTACAATTTTTTGTAGG L L D E Y R V V W Y S F L A S T I F C R Y L M S T V W F G T H S L L L Q F F V G F T - - V P C G L V L I P C F Y N F L - . . . . . . 42930 TTATTAGCCCGGAACTTTGTGATATGTTCTCTTCTTTTTCGAGTCTTCTTGGAGATTTGT L L A R N F V I C S L L F R V F L E I C Y - P G T L - Y V L F F F E S S W R F V V I S P E L C D M F S S F S S L L G D L . . . . . . 42870 AAGATAGTTGCTTATCATCTTAGCAGACCTTTTTTCTCCTTATTAATGATTTTGTTCTAT K I V A Y H L S R P F F S L L M I L F Y R - L L I I L A D L F S P Y - - F C S I - D S C L S S - Q T F F L L I N D F V L . . . . . . 42810 TCTAGAAACAAGGTTATTGGAGACTTGTATTTTTCTTTCAATTTTGTTATAACATATTAG S R N K V I G D L Y F S F N F V I T Y - L E T R L L E T C I F L S I L L - H I R F - K Q G Y W R L V F F F Q F C Y N I L . . . 42750 AGACTTGTACACGTGACAACC R L V H V T T D L Y T - Q E T C T R D N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1-_PGL-6_AGS-1_PPS_1 (43005 42751) (frame '1'; 252 bp, 84 residues) 1 LVFRGLLDEY RVVWYSFLAS TIFCRLLARN FVICSLLFRV FLEICKIVAY HLSRPFFSLL 61 MILFYSRNKV IGDLYFSFNF VITY- 3-phase translation of AGS-1 (+strand): . . . . . . 42730 GGTTGTCACGTGTACAAGTCTCTAATATGTTATAACAAAATTGAAAGAAAAATACAAGTC G C H V Y K S L I C Y N K I E R K I Q V V V T C T S L - Y V I T K L K E K Y K S L S R V Q V S N M L - Q N - K K N T S . . . . . . 42790 TCCAATAACCTTGTTTCTAGAATAGAACAAAATCATTAATAAGGAGAAAAAAGGTCTGCT S N N L V S R I E Q N H - - G E K R S A P I T L F L E - N K I I N K E K K G L L L Q - P C F - N R T K S L I R R K K V C . . . . . . 42850 AAGATGATAAGCAACTATCTTACAAATCTCCAAGAAGACTCGAAAAAGAAGAGAACATAT K M I S N Y L T N L Q E D S K K K R T Y R - - A T I L Q I S K K T R K R R E H I - D D K Q L S Y K S P R R L E K E E N I . . . . . . 42910 CACAAAGTTCCGGGCTAATAACCTACAAAAAATTGTAGAAGCAAGGAATGAGTACCAAAC H K V P G - - P T K N C R S K E - V P N T K F R A N N L Q K I V E A R N E Y Q T S Q S S G L I T Y K K L - K Q G M S T K . . . . . . 42970 CACACGGTACTCATCAAGTAAACCTCTAAACACAAGCTAAGGGGGGTGACATAGGGGTAC H T V L I K - T S K H K L R G V T - G Y T R Y S S S K P L N T S - G G - H R G T P H G T H Q V N L - T Q A K G G D I G V . . . . . . 43030 TCCTACTACCCCAACCGAACCTCCACGACTACAACCTACACAAAAGAATCAGCCCAACCT S Y Y P N R T S T T T T Y T K E S A Q P P T T P T E P P R L Q P T Q K N Q P N L L L L P Q P N L H D Y N L H K R I S P T . . . . . . 43090 AACAACTCACAGTTTACATAGCACATATTATCCACAACAACACTTAGACAATTATATATT N N S Q F T - H I L S T T T L R Q L Y I T T H S L H S T Y Y P Q Q H L D N Y I F - Q L T V Y I A H I I H N N T - T I I Y . . . . . . 43150 CTCCACAACAACACTTTGACAAATTACATATCCTCAACAAAAACACTTCAACAAATTATA L H N N T L T N Y I S S T K T L Q Q I I S T T T L - Q I T Y P Q Q K H F N K L Y S P Q Q H F D K L H I L N K N T S T N Y . . . . . . 43210 TATCCTCAACAACAAGCTCAGTATTCATCAATCACAAGTTTCGCAGAAATGCATTCACAA Y P Q Q Q A Q Y S S I T S F A E M H S Q I L N N K L S I H Q S Q V S Q K C I H K I S S T T S S V F I N H K F R R N A F T . . . . . . 43270 GATCAGCAAAACATAATATCAATTTCACTAATGATAAGTATGTGCAATGCAATGGAATAC D Q Q N I I S I S L M I S M C N A M E Y I S K T - Y Q F H - - - V C A M Q W N T R S A K H N I N F T N D K Y V Q C N G I . . . . . . 43330 GATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTTT D V K Y N D A C L T - - Y T P A V S Q F M S S I M M H V - P S D T H P L S L S L R C Q V - - C M S D L V I H T R C L S V . . . . . . 43390 GGGACCCATGGGGGACATATCTGTCAATGCATCTATCGCTGCGTGCGATAGGTCCCTCAA G T H G G H I C Q C I Y R C V R - V P Q G P M G D I S V N A S I A A C D R S L K W D P W G T Y L S M H L S L R A I G P S . . . 43450 AATATAGTTCCATCGCGGCGC N I V P S R R I - F H R G K Y S S I A A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0167P18.1+_PGL-6_AGS-1_PPS_1 (43111 43362) (frame '1'; 249 bp, 83 residues) 1 HILSTTTLRQ LYILHNNTLT NYISSTKTLQ QIIYPQQQAQ YSSITSFAEM HSQDQQNIIS 61 ISLMISMCNA MEYDVKYNDA CLT- ... finished at: Tue Jul 25 15:49:13 2006