GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 23:29:35 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-q5UkF/C08HBa0197A05/C08HBa0197A05.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0197A05.1, from 1 to 136232, both strands analyzed. ... started at: Mon Aug 28 23:54:43 2006 EST library file: /tmp/cxgn-bacpublish-resources-Z0Jnd1/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 7 HitsTableSize = 37 EST library file: /tmp/cxgn-bacpublish-resources-Z0Jnd1/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 66 ******************************************************************************** EST sequence 79 +strand 661 n (File: SGN-E354195+) 1 TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 61 ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 121 ATTTCTACTT AGGCTTGTAA AGCAATAGAG AATATTGCTT GAACGTGAGA TTAAAAACTT 181 TTTCTCATAT TTGTTGTAAT CGTGTTTCAC TTTTGCTTGT GAAGATTAGT GAAAACGATT 241 GAAAATCCTG TGAGACAAGT CGTGGTTTTA CTCCCTTAAG CAAGGAGGTT TCCACGTAAA 301 ATGTTGTGTT GTTTAAACTG CATTTACTTT CTGTTCATAC TTTTTAGTGT GTCAAGTGAA 361 CTGGGTCATT GACTTATAAG TGAAGGCATT TATTCTATCA GGCACCAAGC AACACATTAG 421 AGGGAAGCAT TTTATAAAGT ATTTGTTTGT ATTTTATTTA TATTTTATCT ACTATGTTCA 481 ATTTTTAAAC TGGAGTCTAA CTGATTCACA TATTCTCCAT CGAGAAACAC ATCAGAGGGA 541 AGCACTCTAT GAAGTATTTT ATTTAATTTT TTACCTGATC TTTTCAATAT TTATATTAGA 601 GTTCAAATTA TTTAATTAGA TTTTGACAAC AAACAACATT GTCGAGGGAA GCACACTATG 661 A Predicted gene structure (within gDNA segment 5052 to 1): Exon 1 2437 2037 ( 401 n); cDNA 1 400 ( 400 n); score: 0.812 MATCH C08HBa0197A05.1- SGN-E354195+ 0.812 401 0.607 C PGS_C08HBa0197A05.1-_SGN-E354195+ (2437 2037) Alignment (genomic DNA sequence = upper lines): TTGTTTAGGA ATGCATTCTC TTGTTCTTAA ACTGTAAACC ATTCCTGAAT CTATAAAGGA 2378 ||| |||||| || | |||| ||| ||||| | | ||||| ||||||||| |||||||||| TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 60 ATTGGTGTGT TGTGTTAAAA GTCTAGGTTG TCCAGGTGGG ATAGCTTAGT GGGTAGATTG 2318 || ||| || ||||| ||| | || |||| || | |||| |||||||||| ||||||||| ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 120 TTTTCTATTT AGGCTTGTTA AGCAATAGTG GACTATTTCT TAACTGTAAG ATTGATAACT 2258 |||||| || |||||||| | |||||||| || |||| || | | || || ||| | |||| ATTTCTACTT AGGCTTGTAA AGCAATAG-A GAATATTGCT TGAACGTGAG ATTAAAAACT 179 CTTTCTTACG TTTGGTGTAA TCGTGTTTTA CTTTTGCTTT TGAATATTAG TGAAAACGAT 2198 ||||| | |||| ||||| |||||||| | ||||||||| |||| ||||| |||||||||| TTTTCTCATA TTTGTTGTAA TCGTGTTTCA CTTTTGCTTG TGAAGATTAG TGAAAACGAT 239 TGAAAATCCT GTAAGACAGG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTCCACGTAA 2138 |||||||||| || ||||| | |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATCCT GTGAGACAAG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTCCACGTAA 299 AATCATCATG TTGATTTTAC TGCATTTAAC TTTCT-TT-T TATTCATTAG TGTAGTAAGG 2080 ||| | || ||| || || ||||||| || ||||| || || | |||| ||| ||| AAT-GTTGTG TTGTTTAAAC TGCATTT-AC TTTCTGTTCA TACTTTTTAG TGTGTCAAGT 357 GACCT-GGTC TATTACTTGT TAAGTGAAGG CATATATTCT ATCA 2037 || || |||| | |||| |||||||||| ||| |||||| |||| GAACTGGGTC ATTGACTT-A TAAGTGAAGG CATTTATTCT ATCA 400 hqPGS_C08HBa0197A05.1-_SGN-E354195+ (2437 2037) ******************************************************************************** EST sequence 3 -strand 501 n (File: SGN-E203362-) 1 GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGACCCTTC 61 CAACCAATGG CAAAGAAGTT TAGGAAAGTG ACTTGCCCAT ATAAAAGGCA CTTTCCTAAA 121 CACTTTTCTT CAGTTTTTGC AACTTGATAA AAACTTTTCA AGAACTCTTG CAAAGGCTCT 181 ACAAAGTAAA GGCAGAATTA TTCCAAGAAC AACAGCAATA TCTTGAGCTT TTCGTCTAGT 241 TGTTTAGGAA TATATTCTCT TGTTCTTAAA CTGTAAACCA TTCCTGAATC TATAAAGGAT 301 TTGGTGTGTT GTGTTAAAAG TCTAGGTTGT CCAGGTGGGA TAGCTTAGTG GGTAGATTGT 361 TTTCTACTTA GGCTTGTTAA GCAATAGAGG ACTATTGCTT AACGGTAAGA TTCATAACTC 421 TTTCTTACGT TTGGTGTAAT CGTGTTTTAC TTTTGCTTTT GAAGATTAGT GAAAACGATT 481 GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 3405 to 1432): Exon 1 2678 2193 ( 486 n); cDNA 1 484 ( 484 n); score: 0.935 PPA cDNA 485 501 MATCH C08HBa0197A05.1- SGN-E203362- 0.935 486 0.970 C PGS_C08HBa0197A05.1-_SGN-E203362- (2678 2193) Alignment (genomic DNA sequence = upper lines): GCTGGAGACG GTACAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGTGACTTT 2619 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| ||||| | GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA --GTGACCCT 58 TCCAGCCAAT GACAAAGAGG TTTAGGAAAG TGACTTGCCC ATATAAAAGA CACTTTCCTA 2559 |||| ||||| | |||||| | |||||||||| |||||||||| ||||||||| |||||||||| TCCAACCAAT GGCAAAGAAG TTTAGGAAAG TGACTTGCCC ATATAAAAGG CACTTTCCTA 118 AACA-TTTTG TGCAACTTTT GCAAATTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 2500 |||| |||| | || |||| |||| ||||| |||||||||| |||||||||| |||||||||| AACACTTTTC TTCAGTTTTT GCAACTTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 178 ACTACAAAGC AAAGACAGAA TTATTCCAAG AACAACAGCA ATATCTGGAG TTTTTCGTCT 2440 |||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| ||||||||| -CTACAAAGT AAAGGCAGAA TTATTCCAAG AACAACAGCA ATATCTTGAG CTTTTCGTCT 237 AGTTGTTTAG GAATGCATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTATAAAG 2380 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTTTAG GAATATATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTATAAAG 297 GAATTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 2320 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 357 TGTTTTCTAT TTAGGCTTGT TAAGCAATAG TGGACTATTT CTTAACTGTA AGATTGATAA 2260 ||||||||| |||||||||| |||||||||| |||||||| |||||| ||| ||||| |||| TGTTTTCTAC TTAGGCTTGT TAAGCAATAG AGGACTATTG CTTAACGGTA AGATTCATAA 417 CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAATATT AGTGAAAACG 2200 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAAGATT AGTGAAAACG 477 ATTGAAA 2193 ||||||| ATTGAAA 484 hqPGS_C08HBa0197A05.1-_SGN-E203362- (2678 2193) ******************************************************************************** EST sequence 37 -strand 662 n (File: SGN-E546563-) 1 AACTCAAATG TTACTTTAAC TGTAAATGTT ATTTGTAGTT TTGATGATTT GACAAACAAT 61 GGGACCTCAT AAAGGTATCA GGTTCTCTAA TTGTGTATTG CAGGTGTCTT GTTTGAGGTA 121 TTGCAGAAGA AACAAAACCA GGGACCTAGT AGAGGTACCA GGCTCTCATG AAAATGAGTC 181 AGTCGACTGC CAGCTGGAGA TGGTACAGAA AGTAGGTGCA CACTTCCCGA TGGCGTCAGA 241 AAAGTGTGAC CTTTTCAGCA AATGGCAAAG GAGTTTAGGA AAGTGACTTG CCCACATAAA 301 AGGCACTTTC CAAAACATTT GTTTTTTAGT TTTTGCAACT TGATAAAAAC TTTTCAAGAA 361 CACTTGCAAA GGCTACACAA AAGGTAGAAT CATTCCAAGA ACAACAGCAA CATCTTGAGC 421 TTGTCGTATA GTTGTTTAGG AATTTATTCT CTTGTTGTTA AATTGTAAAC CACTGCTAAA 481 TCTATAAAGG AATTGGTGTG TTGTGTAAAA GTCTAGGTTG TCCAAGTGGG ATAGCTTAGT 541 GGGTAGATTG TTTTTCTACT TAGGCTTGTT GAGCAATAGA GGACTATTGT TTAACGGTAA 601 GATTGATAAC TCTTTCTTAC GTTTGGTGAA AAAAAAAAAA AAAAAAACTC GAGGGGGGCC 661 CG Predicted gene structure (within gDNA segment 3712 to 1301): Exon 1 2860 2242 ( 619 n); cDNA 9 627 ( 619 n); score: 0.851 PPA cDNA 629 648 MATCH C08HBa0197A05.1- SGN-E546563- 0.851 619 0.935 C PGS_C08HBa0197A05.1-_SGN-E546563- (2860 2242) Alignment (genomic DNA sequence = upper lines): TGAAAACTTA TTTGAAACTG TTATTTGTAG TTTTGATGAT TTGACAAACT TGGGAACCTT 2801 || | ||| || || || |||||||||| |||||||||| ||||||||| || |||| TGTTACTTTA ACTGTAAATG TTATTTGTAG TTTTGATGAT TTGACAAACA ATGGGACCTC 68 GTAAAGGTAC CAGTTTCT-T AATTGACTAT TGTAGGGTTC TTGCTTGA-G TATTGTAGAT 2743 |||||||| ||| |||| | ||||| ||| || ||| || ||| |||| | ||||| ||| ATAAAGGTAT CAGGTTCTCT AATTGTGTAT TGCAGGTGTC TTGTTTGAGG TATTGCAGAA 128 GAAACAAATT AAGGGACCTA GTAGAGGTAC CAGGCTCTCA TGATGAGGAG TCAGTTGATT 2683 |||||||| ||||||||| |||||||||| |||||||||| ||| | ||| ||||| || | GAAACAAAAC CAGGGACCTA GTAGAGGTAC CAGGCTCTCA TGAAAATGAG TCAGTCGACT 188 GCCAGCTGGA GACGGTACAG AAAGTAGGTG CACACTTCCC GATGGCGTCA G-AAAGTGTG 2624 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| | |||||||| GCCAGCTGGA GATGGTACAG AAAGTAGGTG CACACTTCCC GATGGCGTCA GAAAAGTGTG 248 ACTTTTCCAG CCAATGACAA AGAGGTTTAG GAAAGTGACT TGCCCATATA AAAGACACTT 2564 || ||| ||| | |||| ||| || |||||| |||||||||| |||||| ||| |||| ||||| ACCTTTTCAG CAAATGGCAA AGGAGTTTAG GAAAGTGACT TGCCCACATA AAAGGCACTT 308 TCCTAAACA- TT-TTGTGCA ACTTTTGCAA ATTGATAAAA ACTTTTCAAG AACTCTTGCA 2506 ||| ||||| || || | | |||||||| ||||||||| |||||||||| ||| |||||| TCCAAAACAT TTGTTTTTTA GTTTTTGCAA CTTGATAAAA ACTTTTCAAG AACACTTGCA 368 AAGGCTACTA CAAAGCAAAG ACAGAATTAT TCCAAGAACA ACAGCAATAT CTGGAGTTTT 2446 |||||||| | | | |||| ||||| || |||||||||| ||||||| || || ||| || AAGGCTAC-A C--A--AAAG GTAGAATCAT TCCAAGAACA ACAGCAACAT CTTGAGCTTG 423 TCGTCTAGTT GTTTAGGAAT GCATTCTCTT GTTCTTAAAC TGTAAACCAT TCCTGAATCT 2386 |||| ||||| |||||||||| |||||||| ||| ||||| ||||||||| | || ||||| TCGTATAGTT GTTTAGGAAT TTATTCTCTT GTTGTTAAAT TGTAAACCAC TGCTAAATCT 483 ATAAAGGAAT TGGTGTGTTG TGTTAAAAGT CTAGGTTGTC CAGGTGGGAT AGCTTAGTGG 2326 |||||||||| |||||||||| || ||||||| |||||||||| || ||||||| |||||||||| ATAAAGGAAT TGGTGTGTTG TG-TAAAAGT CTAGGTTGTC CAAGTGGGAT AGCTTAGTGG 542 GTAGATTG-T TTTCTATTTA GGCTTGTTAA GCAATAGTGG ACTATTTCTT AACTGTAAGA 2267 |||||||| | |||||| ||| |||||||| | ||||||| || |||||| || ||| |||||| GTAGATTGTT TTTCTACTTA GGCTTGTTGA GCAATAGAGG ACTATTGTTT AACGGTAAGA 602 TTGATAACTC TTTCTTACGT TTGGT 2242 |||||||||| |||||||||| ||||| TTGATAACTC TTTCTTACGT TTGGT 627 hqPGS_C08HBa0197A05.1-_SGN-E546563- (2860 2242) ******************************************************************************** EST sequence 11 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 16047 to 25062): Exon 1 17826 18193 ( 368 n); cDNA 86 447 ( 362 n); score: 0.773 Intron 1 18194 20958 (2765 n); Pd: 0.000 (s: 0.70), Pa: 0.927 (s: 0) Exon 2 20959 20966 ( 8 n); cDNA 448 455 ( 8 n); score: 0.750 PPA cDNA 12 1 MATCH C08HBa0197A05.1+ SGN-E540411+ 0.773 376 0.438 C PGS_C08HBa0197A05.1+_SGN-E540411+ (17826 18193,20959 20966) Alignment (genomic DNA sequence = upper lines): TTTAACTATT CAACTTTTAT ATAAATAAAC GAGATAATGC CCAAGTACCC CCTCAACCTA 17885 || ||||| | || || | | |||||| | |||||||| ||||||||| |||||||||| TTGAACTA-T -AA-TTAAAG AACAATAAA- GGGATAATGC ACAAGTACCC CCTCAACCTA 141 TGCCCGAAAT CTCAGAGACA CACTTATACT ATACTAAGGT CCTATTACCC CCCTGAACTT 17945 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCGAAAT TCCAGAGACA CACTTATACT ATACTAAGGT CCTATTACCC CCCTGAACTT 201 ATTTTATTAA TAATTTTTTA CCCCTTTTTA GCTTACGTGA CACTATCTTG TGGGCCCAAC 18005 ||||||| | ||||||| || |||||||||| || |||||| ||||| || | ATTTTATAAG TAATTTTCTA CCCCTTTTTA GCCTACGTGG CACTAGTTTA AAAAAAAAGT 261 GATGGTTGAC TTTTTTTTTG AACTAGTGCC ACGTAGGCTA AAAAGAGGTA GAAAATTACA 18065 | | | | ||||||| ||||||| ||||| |||| ||||||| CAACAACCAT TGGGCCCACA AGATAGTGCC ACGTAGGTCT AAAAGGGGTA AAAAATTA-T 320 TATAAAATAA GTTCAGGGGG GTAATAGGAC CTTAGTATAG TATAAGTGTG TCTCTGGGAT 18125 || |||||| ||||| |||| |||||| || |||||||| | ||||||||| |||||| ||| TAATAAATAA GTTCA-GGGG GTAATAAGAT CTTAGTATGG TATAAGTGTA TCTCTGAGAT 379 TTCGGGCATA GGTTGAGGGC GTACTTGGAT ATTTTCCCTA -AATAAACAC ATGAGTCTTA 18184 || || |||| || | |||| ||||||||| ||| |||| | |||||| | | || | | | TTTGGACATA GGCTAAGGGG GTACTTGGAC ATTATCCCAA CAATAAATAA AGGA-TATAA 438 CATGACACAA TACATGTAAG ACACCACGTA GGATAAAAAT GACATGTAGG ACATGTGTGT 18244 ||||| || CATGATTCA. .......... .......... .......... .......... .......... 447 CTATTTGTTC GACTTTATAC AAGTTTAAGT GTCTACTTGT GCACACCCAA AGTTGAAGGG 18304 .......... .......... .......... .......... .......... .......... 447 CATAAATGTA ATTCGAATTC CAGTTAAAAA GCATATTTAT GTATTATGCC TTTTATAGAT 18364 .......... .......... .......... .......... .......... .......... 447 ATGCGATGAT CTAAATTGCT ATCGATACAA TAAGCAGTTA AAAATAATTC CAAGGCCATC 18424 .......... .......... .......... .......... .......... .......... 447 TTGTTCAGTA TAGTAGATGA AAATATGGCC ATTTTGACCA CTATTCAAAA CTTTACCACT 18484 .......... .......... .......... .......... .......... .......... 447 TCCTCGTGAT ACCACTTTTG TTTGCAAGAC TAACATTGAA GAAGTTGTCA GCATTAACAT 18544 .......... .......... .......... .......... .......... .......... 447 CTTCACCTAC ATAATCCAGC TTCAACAAAC ATAACAAAAA TAATTGTTAA CCCCTCCTAT 18604 .......... .......... .......... .......... .......... .......... 447 TTTATAATCT CGAAAATCCC TTTGTTTAAA TATATATATA TATATATATA ATCTCGAAAA 18664 .......... .......... .......... .......... .......... .......... 447 TATATTCAAG CCAACACGAA AAAGAACAAA CCTTAGGAAC ACCTTTGTAA ACATCTTGTC 18724 .......... .......... .......... .......... .......... .......... 447 CATGTGGACT ATTGATGATA ACTCTAGGTC TAGGATTCAT AGTATTGTCA GCAATATCAT 18784 .......... .......... .......... .......... .......... .......... 447 CGTATATGAA TACAATAATG TTTTCGTCTT TAAGACTACC TTTCTTGAGT ATTTGGTAAG 18844 .......... .......... .......... .......... .......... .......... 447 CATGACATAC GTCAGCCTGA AATCAATCAA TAAAATCACC AAACAAATAA CATTTCATGA 18904 .......... .......... .......... .......... .......... .......... 447 TACATTATTT AAAGAAAATT TTAGTTTTAT TAATAGATGA GAACCTGGTG CCTATAATTA 18964 .......... .......... .......... .......... .......... .......... 447 AACCATCCAT TAGAGCCGGC AACTAGGACA GCCCTTTGGT CCCTACAGTT TCTTCAGTTA 19024 .......... .......... .......... .......... .......... .......... 447 AGAATTTAGA GATACTACGA CCTTCAATGT TGGCACAAAT TGAGAGCACA ACAACAAGTA 19084 .......... .......... .......... .......... .......... .......... 447 CAACACACAC ATTGTACTTA AATATCATTG TATTGTGTTT TAATTTATGG TAAATTAACA 19144 .......... .......... .......... .......... .......... .......... 447 AGCTAGGGGA CTATTGATCA GTTGTATGAA TCATATTGAT GTATGAGAAA TATATAGGAC 19204 .......... .......... .......... .......... .......... .......... 447 TTCAAGCTCC AACATAAGAG AATGACGTAG AATTCAAAGG TAACAATTAC CATAAGAAGT 19264 .......... .......... .......... .......... .......... .......... 447 CATGAAATGT GTCAAAGATA TATTCTCATT GATTAATTTA CAAGAAATTT ATCCTCATGA 19324 .......... .......... .......... .......... .......... .......... 447 CTTATGAAAG TTTTGTCATG TTATCACATT GTTATTGTAC GTTTTCTTTT TGGAGTTAAT 19384 .......... .......... .......... .......... .......... .......... 447 AACTTTGATT GGTCACTCAA CTATCAATTG TTTTCACAGA AGTCATTCAA CTTTCATTTT 19444 .......... .......... .......... .......... .......... .......... 447 CAACTAAAAA GTCACTCACT ATGATTTCTT TGCCCAGAAA GTCATTCAAC TTTCATTTTC 19504 .......... .......... .......... .......... .......... .......... 447 AACTCAAAAG TTACTCAACT TCTTTACACA GAAAGTCACT TAATCTATTT AATTGTTTTT 19564 .......... .......... .......... .......... .......... .......... 447 CATTAAAATT TAGTGACATG AAATTTTAAT TATTATTATA AATTTTAAGA ATCAAATATA 19624 .......... .......... .......... .......... .......... .......... 447 TATCCATTTA AACCATTTAA TGACCCGCTC CATTTAATCC GATCCGTTAA AAATATAATA 19684 .......... .......... .......... .......... .......... .......... 447 TTAAACATTT TATTTTACCA TTAATCCCCC TAAATCATTC CCCATTGAAC ATTTTATTTT 19744 .......... .......... .......... .......... .......... .......... 447 ACCATTAATT CACTAAAAGA ATGTGGGAGA CAAGGGAGAA TGATTTAGGG AATTAATAGT 19804 .......... .......... .......... .......... .......... .......... 447 AAAATAAAAT GTTCAATATT ATATTTTTAA CCGGTCGAGT TAAATGGAGC GGGTCATTAA 19864 .......... .......... .......... .......... .......... .......... 447 ATGGGTATAT ATTCGATTAT TAAAATTTTG GTTAATGATT AAAATTTTAT GTCAATAAAT 19924 .......... .......... .......... .......... .......... .......... 447 TTTAATGAAA ATAACAATTA AATAGGTTAA GTGACTTTTT GGGCAAAGAA CTCATAGTTG 19984 .......... .......... .......... .......... .......... .......... 447 AATGACTTTT GAGTTGAAAA TGAAAGTTGA GTGACTTTCT GTGCAAAAAA GTTATAATTG 20044 .......... .......... .......... .......... .......... .......... 447 AGTGACTTTT GAGTTGAAAA TGGATGTTGA ATGACTTTTT GTGAAAACAA TTGATAGTTG 20104 .......... .......... .......... .......... .......... .......... 447 AGTGAGCATC AAAGTAATTA AATCTTTCTT TTTATGTCCA TGAGAGTGGA CCGGTACACT 20164 .......... .......... .......... .......... .......... .......... 447 CCATTCGTTT CAATTTATAT CACATTGTTA GTCTTGACAC AATTCAAAGT ATTAAAGAGG 20224 .......... .......... .......... .......... .......... .......... 447 TCTTTTGAAA TTTGTGATCG AAAAAATATC CTTTGACCAT TTGTATTGAT TATTATTTCA 20284 .......... .......... .......... .......... .......... .......... 447 TTAGGGGTAA AATAAAAAAT TTAAAAGTTA AATTATTTCC AATTGTAGAA ATGTTGTATT 20344 .......... .......... .......... .......... .......... .......... 447 TTATTTTTTT TGGATTGACT AAAAGACATA ACAATAAAAA TAACTTTTAG CGGCATTAAA 20404 .......... .......... .......... .......... .......... .......... 447 TATTAATATT AATATTAATA AAGAGTGTTA AAGTCTTTAC TATCATTAGA ATCAATGTCT 20464 .......... .......... .......... .......... .......... .......... 447 CTAAGACTTT AAAGACATAC ACAAAAGGTA CTAATTACCG CTAAATATAC ATATATATTT 20524 .......... .......... .......... .......... .......... .......... 447 AGTGGTAATT AATTCTTAAT TGCTACTAAT GATAATTTTT TATGTAGTGA CGAAAAATGT 20584 .......... .......... .......... .......... .......... .......... 447 CTCACATAAA TAGGGACAAA GAAAATATAA TTTAAAGGAA AAACTACATA ATTAAGCAAA 20644 .......... .......... .......... .......... .......... .......... 447 CAAAACTACT ACTATATATT ATATACACAG TCTAGAGATA GACACTACAA GAAAAATGTT 20704 .......... .......... .......... .......... .......... .......... 447 AATTACATGG GGATTTTCCT GGGATTAGTA TGAAAATTCG TAGGAAATTT ATTTTCTTGC 20764 .......... .......... .......... .......... .......... .......... 447 AAAAATTTTT ATACTAATTT TCAGAAAAAT CCCTAAATAA TTCACACTTT TCTTGTAGTG 20824 .......... .......... .......... .......... .......... .......... 447 AGATACTTTC AAAATAGGAG ATATTACGCG GATAAGCAAA TATTTACTAG TTAAATAGCT 20884 .......... .......... .......... .......... .......... .......... 447 AACATAGTTG TAGTTTGAAT TAATTACCAT TGACAACCTT TTTTTAGCTA TAATTACGTA 20944 .......... .......... .......... .......... .......... .......... 447 TAATTATATG ACAGACATAC AA 20966 | | || || .......... ....AAAGAC AA 455 hqPGS_C08HBa0197A05.1+_SGN-E540411+ (17826 18193) ******************************************************************************** EST sequence 56 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 12144 to 20044): Exon 1 14211 14216 ( 6 n); cDNA 439 444 ( 6 n); score: 0.667 Intron 1 14217 17858 (3642 n); Pd: 0.912 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 17859 18164 ( 306 n); cDNA 445 748 ( 304 n); score: 0.908 PPA cDNA 847 858 MATCH C08HBa0197A05.1+ SGN-E540411- 0.908 312 0.364 C PGS_C08HBa0197A05.1+_SGN-E540411- (14211 14216,17859 18164) Alignment (genomic DNA sequence = upper lines): GTTCTGGCAA GTGATCCGTT CTATCTACTT TCAAGTGCTT GGATCCTTTT CATCCAAGAC 14270 ||| | GTTGGG.... .......... .......... .......... .......... .......... 444 TTGGTATGTC CTCATGGATT CGAGGACAAG ACCTTAAGTT TCTTTTATTC ATGTAATAGA 14330 .......... .......... .......... .......... .......... .......... 444 TATTTAGTAG TCGCTTTGAA TGTAAAGGGT TGTGTCCATA GTATGTTTTG AGATTGTGTC 14390 .......... .......... .......... .......... .......... .......... 444 TGAGATGGTC ATGTGAGATT TAGACTTTCG CTGTATTTCA AGTATTTCTT TCAAATAAAG 14450 .......... .......... .......... .......... .......... .......... 444 CTTTGATATT TTGGATTTAA ATGAGTTTTA ACTACGCATT ATTTCTATAT AGAATGTTAT 14510 .......... .......... .......... .......... .......... .......... 444 GAGGCTTTTC GGGGTCTTGT ACGCCGTATC ACGATAAGGG GGTGCTCTCG AATTGTGACA 14570 .......... .......... .......... .......... .......... .......... 444 TTTACTCAAC TTAGCCTCAA TTTATGTATA CTCAACTCAA AGCAGTATAA AAACAACAAT 14630 .......... .......... .......... .......... .......... .......... 444 AAAAATGTAG TTTATATAGA GCATTTTAAA ACAATAGATA ACAACTCAAT GTATTCAAAA 14690 .......... .......... .......... .......... .......... .......... 444 GTACAATAAT AACTCAGTTC GCATGTAAAA ATATAAAATA ACTCTATTGG GGAGATTTTC 14750 .......... .......... .......... .......... .......... .......... 444 TAAGTGACAA CCATCACTAT GAGCTATGTA ATGATACAGC TTGCCCGCGC TGCTAGAATT 14810 .......... .......... .......... .......... .......... .......... 444 GGCATATACC TTGTCGGGGT GCAGAATTCC TCAACTAAGT AGATCCACTA AGAGTTATGC 14870 .......... .......... .......... .......... .......... .......... 444 TTAAAAAGAA ATTAATCATC TAAAAAGTAT GACCCTTTTC TACCTTTGTT GGTTACATGG 14930 .......... .......... .......... .......... .......... .......... 444 TTTATGAGGA CTTTGAGTTA TCTAAACTCG TCTTCATATC GGTGCTCAAT ACTACTCCAA 14990 .......... .......... .......... .......... .......... .......... 444 AAATATAACT TAGCTCATAT GTTTTAAACA TTTCCTCATC CTTAACTTTG AGATTATTAC 15050 .......... .......... .......... .......... .......... .......... 444 TCAAAATATT TCTCTTAAAA CAGATAGTAC CCAAACTCCC CATGAACTCC TTTGGAAATT 15110 .......... .......... .......... .......... .......... .......... 444 GGTGTTTCCC CTCATTTTAA ATATAAAAAC GTTTACTTTT GGAAATACTT AGTTCCCGTA 15170 .......... .......... .......... .......... .......... .......... 444 TATTTAATTT TAAAAATGAA ACTCAACTCT CTTCGTCCTC TAACTTAAGT ACTCAATTCT 15230 .......... .......... .......... .......... .......... .......... 444 TAAAATAAGT TTTAAAAGAT TGTAAAAGAC TTCTCAAAAT GACTCGAAAT AACTCTCAAG 15290 .......... .......... .......... .......... .......... .......... 444 ACTTTACTCT TAACTCTACT TTGAATTTGA ATTTTGAATT CAAGGGTTAT GATTCATATC 15350 .......... .......... .......... .......... .......... .......... 444 ATGAATGATC TCTCGATGTT TAAGTGAGCA TATCAAGTAG AAAACATAGG TACGATTCGA 15410 .......... .......... .......... .......... .......... .......... 444 GGAAACTCAC ACGAAAAGAA GGTGGGAAGG GTAGGGGATC TGGCGACCCT GGCGCACTGA 15470 .......... .......... .......... .......... .......... .......... 444 GTGGCGCAGG GTGCCAGACC TTAACCTACC AAACACTAGT TGGGACGCAC CGAGTAGAAC 15530 .......... .......... .......... .......... .......... .......... 444 GGCACCCCAG GCCTCTGCCC AGAAAACCAA TAAATTTCTT GTTCAAACTC ATTCCCTAAC 15590 .......... .......... .......... .......... .......... .......... 444 TCATCTAGAA TCGAACGATT CCCCTCAAAA TCTTATGGGT CCATAGACCC ACGTAATTAC 15650 .......... .......... .......... .......... .......... .......... 444 AACGAAATCC ACTCTAAATT ACTCAAGAAC CATACTGAAA CACAAGATCC TCATTGCAAG 15710 .......... .......... .......... .......... .......... .......... 444 AGCTCAACGA AACCTCACTC CCCACTCTCC ACCACATCCC ACCTTCATAT TATTTTCTAG 15770 .......... .......... .......... .......... .......... .......... 444 AGAATTAAAG AATGTGTTTT GATAGAACTT TGAACTCTTC AACTAATTTA GAATGTTGAA 15830 .......... .......... .......... .......... .......... .......... 444 GTATGACATT GCCAGTTTGT TATATCTTGA CGGGAGAAGT CAAGAGTTAT TCTATTATAT 15890 .......... .......... .......... .......... .......... .......... 444 CGTGATTTCA TACCGTAGTG AACTTGGATC TCCTTTAAGA GAGCGAGAAT ATATTTATTC 15950 .......... .......... .......... .......... .......... .......... 444 ATTTCTTTCA TTTTATTTTC AACCGTAATT TAAGGTATAT TCACCAACAC ATTATTTTAT 16010 .......... .......... .......... .......... .......... .......... 444 ACCTTTTTAT TTTTCGTTCT CTTCATGATA AATATTACAT GACATTATAA TGAATGTGAA 16070 .......... .......... .......... .......... .......... .......... 444 AATGACAATA CATTCATAAA TAAATATCTC CATGACAATG TTATACTCTA CTACATGGTA 16130 .......... .......... .......... .......... .......... .......... 444 AGGGGACAAG ATGTACTTTT CAACATGAAC CATAATATTA TTCTCATTGT TGCAATTCAT 16190 .......... .......... .......... .......... .......... .......... 444 GAAAGTGAAA TGTAATTATG CAACCATAAC ACAAATAGGC TAAACATTAC ATTAACTTTG 16250 .......... .......... .......... .......... .......... .......... 444 AGCCAAGAAT ATCCTCTTCT AATCAAGAGG AACATGCTTG TGCTAACCAT CATTGCAAAT 16310 .......... .......... .......... .......... .......... .......... 444 ATTCTCGATA CCACGTATGT GTTTCTTCCC GTACGAGCTT AATTTTCCAC AATGTGCCTC 16370 .......... .......... .......... .......... .......... .......... 444 AAATGTTTCG ATCTATACAT GAAAAAAACT CGTTAAACTC AAAAGAACAA AAAAAAACAC 16430 .......... .......... .......... .......... .......... .......... 444 GAAAAATACG ACCAAATAAT TAGGTTGCTA CTTACATAGG ATTTTAAGCA ATCCCAATTG 16490 .......... .......... .......... .......... .......... .......... 444 TCAACAAGAG GTTGTGCAGC AGGTCGAACG TGCTGCAGTA CTTCACTACC TTTTTCAACT 16550 .......... .......... .......... .......... .......... .......... 444 CCAAACAGAA GATCACCAAT ATGTTTTGCA CTATTATCCA CTTGACTTCT CTCTGCTATA 16610 .......... .......... .......... .......... .......... .......... 444 GTTTTGATAA GTTTGACATG AGTTTCAAAA TGCTCATCGG AGCCTTCAGG AGCATCTTGA 16670 .......... .......... .......... .......... .......... .......... 444 TACTGTCAAG ATTACGAATA AATTAGAACG CTTTTTTAAT TCTCTGTGTT ATAATAGGTG 16730 .......... .......... .......... .......... .......... .......... 444 AAATCAAATT TATCCAGATG AAGTAGGAAA AACTTAAAAT TACTTTTGAT GTCAAGTAGA 16790 .......... .......... .......... .......... .......... .......... 444 AAAGTTCAAC ATAACGTTGG TCCACATTTT GTGACGATGA TTCAGAATTC ATGGAAACGT 16850 .......... .......... .......... .......... .......... .......... 444 GACTATGGTT ACAGAAGCAG CGCCCATATA CTGGAAAAGT ACATTGACAC TTAACACTGT 16910 .......... .......... .......... .......... .......... .......... 444 ATCGCCATAT TGCATGACAT GTGAAACATA TGTCAGATTG GCTGTTGTTC TGTTTGCAAC 16970 .......... .......... .......... .......... .......... .......... 444 CTGAGCAGCA TTGTACACAA TGAAATTATA ATAAAGCATA AATATGGTGT ATAGGATCTG 17030 .......... .......... .......... .......... .......... .......... 444 AACAGAACTT TTAGAATATA TGTACAATTG AGAGTATATA TGTATTACAA GTCTTACCGC 17090 .......... .......... .......... .......... .......... .......... 444 GTTATACCGG TCGTTCAAAG TTTCAGTTTG CCGATCTTCA GCTTCACTGT TTACAAGTGA 17150 .......... .......... .......... .......... .......... .......... 444 AAACATCAAT AAATTTGACA CAATTAACAA TGATGTATTA TCATAAGAGA AGTATCGGAA 17210 .......... .......... .......... .......... .......... .......... 444 ATTGATTTTT TTTTTTTGTA TAGTTCATTT TGATCCAAAA AAAGAAGGCA TCTTTAGGAC 17270 .......... .......... .......... .......... .......... .......... 444 TAGAAAAGTT GTGAATTAGG CATGCTGAGC TGAAAGGAGG CAAGTAATTA ATAAAGAAGG 17330 .......... .......... .......... .......... .......... .......... 444 GAGGCATTAC AAGCCGACTA TAAGAAAAGC AAAGTTTTGT AGACGCGATT ACCTATCTTA 17390 .......... .......... .......... .......... .......... .......... 444 CATCCAAGGA ACACTATGTA AGTCTCCCAT GCACACACCT TTAAACTCAG GAGGGGGACA 17450 .......... .......... .......... .......... .......... .......... 444 CTCTACCAAG CAAGGACCAC CTGCACCCAC TTGACAATAT GTTCCCTAAC TTCTTTCATT 17510 .......... .......... .......... .......... .......... .......... 444 GGGATTTGAT GCAATCTTTA CATAAAATAT TTAAACCTAC TCACAAGCTT CTAAGTAAAA 17570 .......... .......... .......... .......... .......... .......... 444 TACCTAAACA AATAAGAAAA AAACATCATA ATATTAGACC AAAGGAATTA AGCAAATGAC 17630 .......... .......... .......... .......... .......... .......... 444 ATTAAGCATG CTTCTTTTTC AATATGTTGA TCAAGTCATT CGCGTAGACA AATTCAGTTG 17690 .......... .......... .......... .......... .......... .......... 444 GCATTGCTGT TCATTTTTAA ACCATGAAAT AAACATAAGT AACTTTTTAT ATAGGCATAA 17750 .......... .......... .......... .......... .......... .......... 444 TACTTGTATT GGACCCTAAA CTTGGCTTCG AATTTTAACT TTGACCTCCA ACTTTCATAA 17810 .......... .......... .......... .......... .......... .......... 444 TGCACAAACA AGAAATTTAA CTATTCAACT TTTATATAAA TAAACGAGAT AATGCCCAAG 17870 || |||| ||||| .......... .......... .......... .......... ........AT AATGTCCAAG 456 TACCCCCTCA ACCTATGCCC GAAATCTCAG AGACACACTT ATACTATACT AAGGTCCTAT 17930 |||||||| | |||||| || ||||||||| ||| |||||| |||| ||||| ||| || ||| TACCCCCTTA GCCTATGTCC AAAATCTCAG AGATACACTT ATACCATACT AAGATCTTAT 516 TACCCCCCTG AACTTATTTT ATTAATAATT TTTTACCCCT TTTTAGCTTA CGTGACACTA 17990 || ||||||| |||||| ||| |||||||||| |||||||||| ||| | || |||| ||||| TA-CCCCCTG AACTTA-TTT ATTAATAATT TTTTACCCCT TTTAGACCTA CGTGGCACTA 574 TCTTGTGGGC CCAACGATGG TTGACTTTTT TTTTGAACTA GTGCCACGTA GGCTAAAAAG 18050 |||||||||| |||| | | | |||||||||| |||| ||||| |||||||||| |||||||||| TCTTGTGGGC CCAATGGTTG TTGACTTTTT TTTTAAACTA GTGCCACGTA GGCTAAAAAG 634 AGGTAGAAAA TTACATATAA AATAAGTTCA GGGGGGTAAT AGGACCTTAG TATAGTATAA 18110 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAGAAAA TTACTTATAA AATAAGTTCA GGGGGGTAAT AGGACCTTAG TATAGTATAA 694 GTGTGTCTCT GGGATTTCGG GCATAGGTTG AGGGCGTACT TGGATATTTT CCCT 18164 |||||||||| || ||||||| |||||||||| |||| ||||| || ||| | |||| GTGTGTCTCT GGAATTTCGG GCATAGGTTG AGGGGGTACT TGTGCATTAT CCCT 748 hqPGS_C08HBa0197A05.1+_SGN-E540411- (17859 18164) ******************************************************************************** EST sequence 13 +strand 702 n (File: SGN-E540414+) 1 TGAATCAACT AAAAGTGGTT ACAATGATCT TAAACGAGGT CTTAAGGTTG TATACATCAG 61 TATACGCGAT TAATCGCATG GTGAATACAG AAACAAAGTT AGGGGATTTG TGTTTACCCT 121 CTGGGGTCCA ACTCATATTG GCAACAATGT TAGTGCATCA TGATACTGAA ATATGGGGAG 181 ATGATGCAAT GGAGTTTATG CCAGAGAGAT TTAGTGAAGG AATATCAAAA GCAACAAAAG 241 GACAAGTTGT ATTTTTTCCA TTTAGTTGGG GTCCAAGAAT ATGTATTGGG CAAAATTTTG 301 CTATGTTAGA GGCAAAAATG GCAATGGTCA TGATTCTAAA ACATTATGCA TTTGAACTCT 361 CTCCATCTTA TGCTCATGCT CCTCACCCAT TGTTGCTTCA ACCTCAATAT GGTGCTCAAT 421 TGATCATGCA CAAGTTGTAG AAGTGGTTAT CACGTGTTGT CTTTTGAATC ATGTTATATC 481 CTTTATTTAT TGTTGGGATA ATGTCCAAGT ACCCCCTTAG CCTATGTCCA AAATCTCAGA 541 GATACACTTA TACCATACTA AGATCTTATT ACCCCCTGAA CTTATTTATT AATAATTTTT 601 TACCCCTTTT AGACCTACGT GGCACTATCT TGTGGGCCCA ATGGTTGTTG ACTTTTTTTT 661 TAAACTAGTG CCACGTAGGC TAAAAAGGGG TAGAAATTAC TT Predicted gene structure (within gDNA segment 11624 to 19224): Exon 1 14211 14216 ( 6 n); cDNA 492 497 ( 6 n); score: 0.667 Intron 1 14217 17858 (3642 n); Pd: 0.912 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 17859 18064 ( 206 n); cDNA 498 700 ( 203 n); score: 0.893 MATCH C08HBa0197A05.1+ SGN-E540414+ 0.893 212 0.302 C PGS_C08HBa0197A05.1+_SGN-E540414+ (14211 14216,17859 18064) Alignment (genomic DNA sequence = upper lines): GTTCTGGCAA GTGATCCGTT CTATCTACTT TCAAGTGCTT GGATCCTTTT CATCCAAGAC 14270 ||| | GTTGGG.... .......... .......... .......... .......... .......... 497 TTGGTATGTC CTCATGGATT CGAGGACAAG ACCTTAAGTT TCTTTTATTC ATGTAATAGA 14330 .......... .......... .......... .......... .......... .......... 497 TATTTAGTAG TCGCTTTGAA TGTAAAGGGT TGTGTCCATA GTATGTTTTG AGATTGTGTC 14390 .......... .......... .......... .......... .......... .......... 497 TGAGATGGTC ATGTGAGATT TAGACTTTCG CTGTATTTCA AGTATTTCTT TCAAATAAAG 14450 .......... .......... .......... .......... .......... .......... 497 CTTTGATATT TTGGATTTAA ATGAGTTTTA ACTACGCATT ATTTCTATAT AGAATGTTAT 14510 .......... .......... .......... .......... .......... .......... 497 GAGGCTTTTC GGGGTCTTGT ACGCCGTATC ACGATAAGGG GGTGCTCTCG AATTGTGACA 14570 .......... .......... .......... .......... .......... .......... 497 TTTACTCAAC TTAGCCTCAA TTTATGTATA CTCAACTCAA AGCAGTATAA AAACAACAAT 14630 .......... .......... .......... .......... .......... .......... 497 AAAAATGTAG TTTATATAGA GCATTTTAAA ACAATAGATA ACAACTCAAT GTATTCAAAA 14690 .......... .......... .......... .......... .......... .......... 497 GTACAATAAT AACTCAGTTC GCATGTAAAA ATATAAAATA ACTCTATTGG GGAGATTTTC 14750 .......... .......... .......... .......... .......... .......... 497 TAAGTGACAA CCATCACTAT GAGCTATGTA ATGATACAGC TTGCCCGCGC TGCTAGAATT 14810 .......... .......... .......... .......... .......... .......... 497 GGCATATACC TTGTCGGGGT GCAGAATTCC TCAACTAAGT AGATCCACTA AGAGTTATGC 14870 .......... .......... .......... .......... .......... .......... 497 TTAAAAAGAA ATTAATCATC TAAAAAGTAT GACCCTTTTC TACCTTTGTT GGTTACATGG 14930 .......... .......... .......... .......... .......... .......... 497 TTTATGAGGA CTTTGAGTTA TCTAAACTCG TCTTCATATC GGTGCTCAAT ACTACTCCAA 14990 .......... .......... .......... .......... .......... .......... 497 AAATATAACT TAGCTCATAT GTTTTAAACA TTTCCTCATC CTTAACTTTG AGATTATTAC 15050 .......... .......... .......... .......... .......... .......... 497 TCAAAATATT TCTCTTAAAA CAGATAGTAC CCAAACTCCC CATGAACTCC TTTGGAAATT 15110 .......... .......... .......... .......... .......... .......... 497 GGTGTTTCCC CTCATTTTAA ATATAAAAAC GTTTACTTTT GGAAATACTT AGTTCCCGTA 15170 .......... .......... .......... .......... .......... .......... 497 TATTTAATTT TAAAAATGAA ACTCAACTCT CTTCGTCCTC TAACTTAAGT ACTCAATTCT 15230 .......... .......... .......... .......... .......... .......... 497 TAAAATAAGT TTTAAAAGAT TGTAAAAGAC TTCTCAAAAT GACTCGAAAT AACTCTCAAG 15290 .......... .......... .......... .......... .......... .......... 497 ACTTTACTCT TAACTCTACT TTGAATTTGA ATTTTGAATT CAAGGGTTAT GATTCATATC 15350 .......... .......... .......... .......... .......... .......... 497 ATGAATGATC TCTCGATGTT TAAGTGAGCA TATCAAGTAG AAAACATAGG TACGATTCGA 15410 .......... .......... .......... .......... .......... .......... 497 GGAAACTCAC ACGAAAAGAA GGTGGGAAGG GTAGGGGATC TGGCGACCCT GGCGCACTGA 15470 .......... .......... .......... .......... .......... .......... 497 GTGGCGCAGG GTGCCAGACC TTAACCTACC AAACACTAGT TGGGACGCAC CGAGTAGAAC 15530 .......... .......... .......... .......... .......... .......... 497 GGCACCCCAG GCCTCTGCCC AGAAAACCAA TAAATTTCTT GTTCAAACTC ATTCCCTAAC 15590 .......... .......... .......... .......... .......... .......... 497 TCATCTAGAA TCGAACGATT CCCCTCAAAA TCTTATGGGT CCATAGACCC ACGTAATTAC 15650 .......... .......... .......... .......... .......... .......... 497 AACGAAATCC ACTCTAAATT ACTCAAGAAC CATACTGAAA CACAAGATCC TCATTGCAAG 15710 .......... .......... .......... .......... .......... .......... 497 AGCTCAACGA AACCTCACTC CCCACTCTCC ACCACATCCC ACCTTCATAT TATTTTCTAG 15770 .......... .......... .......... .......... .......... .......... 497 AGAATTAAAG AATGTGTTTT GATAGAACTT TGAACTCTTC AACTAATTTA GAATGTTGAA 15830 .......... .......... .......... .......... .......... .......... 497 GTATGACATT GCCAGTTTGT TATATCTTGA CGGGAGAAGT CAAGAGTTAT TCTATTATAT 15890 .......... .......... .......... .......... .......... .......... 497 CGTGATTTCA TACCGTAGTG AACTTGGATC TCCTTTAAGA GAGCGAGAAT ATATTTATTC 15950 .......... .......... .......... .......... .......... .......... 497 ATTTCTTTCA TTTTATTTTC AACCGTAATT TAAGGTATAT TCACCAACAC ATTATTTTAT 16010 .......... .......... .......... .......... .......... .......... 497 ACCTTTTTAT TTTTCGTTCT CTTCATGATA AATATTACAT GACATTATAA TGAATGTGAA 16070 .......... .......... .......... .......... .......... .......... 497 AATGACAATA CATTCATAAA TAAATATCTC CATGACAATG TTATACTCTA CTACATGGTA 16130 .......... .......... .......... .......... .......... .......... 497 AGGGGACAAG ATGTACTTTT CAACATGAAC CATAATATTA TTCTCATTGT TGCAATTCAT 16190 .......... .......... .......... .......... .......... .......... 497 GAAAGTGAAA TGTAATTATG CAACCATAAC ACAAATAGGC TAAACATTAC ATTAACTTTG 16250 .......... .......... .......... .......... .......... .......... 497 AGCCAAGAAT ATCCTCTTCT AATCAAGAGG AACATGCTTG TGCTAACCAT CATTGCAAAT 16310 .......... .......... .......... .......... .......... .......... 497 ATTCTCGATA CCACGTATGT GTTTCTTCCC GTACGAGCTT AATTTTCCAC AATGTGCCTC 16370 .......... .......... .......... .......... .......... .......... 497 AAATGTTTCG ATCTATACAT GAAAAAAACT CGTTAAACTC AAAAGAACAA AAAAAAACAC 16430 .......... .......... .......... .......... .......... .......... 497 GAAAAATACG ACCAAATAAT TAGGTTGCTA CTTACATAGG ATTTTAAGCA ATCCCAATTG 16490 .......... .......... .......... .......... .......... .......... 497 TCAACAAGAG GTTGTGCAGC AGGTCGAACG TGCTGCAGTA CTTCACTACC TTTTTCAACT 16550 .......... .......... .......... .......... .......... .......... 497 CCAAACAGAA GATCACCAAT ATGTTTTGCA CTATTATCCA CTTGACTTCT CTCTGCTATA 16610 .......... .......... .......... .......... .......... .......... 497 GTTTTGATAA GTTTGACATG AGTTTCAAAA TGCTCATCGG AGCCTTCAGG AGCATCTTGA 16670 .......... .......... .......... .......... .......... .......... 497 TACTGTCAAG ATTACGAATA AATTAGAACG CTTTTTTAAT TCTCTGTGTT ATAATAGGTG 16730 .......... .......... .......... .......... .......... .......... 497 AAATCAAATT TATCCAGATG AAGTAGGAAA AACTTAAAAT TACTTTTGAT GTCAAGTAGA 16790 .......... .......... .......... .......... .......... .......... 497 AAAGTTCAAC ATAACGTTGG TCCACATTTT GTGACGATGA TTCAGAATTC ATGGAAACGT 16850 .......... .......... .......... .......... .......... .......... 497 GACTATGGTT ACAGAAGCAG CGCCCATATA CTGGAAAAGT ACATTGACAC TTAACACTGT 16910 .......... .......... .......... .......... .......... .......... 497 ATCGCCATAT TGCATGACAT GTGAAACATA TGTCAGATTG GCTGTTGTTC TGTTTGCAAC 16970 .......... .......... .......... .......... .......... .......... 497 CTGAGCAGCA TTGTACACAA TGAAATTATA ATAAAGCATA AATATGGTGT ATAGGATCTG 17030 .......... .......... .......... .......... .......... .......... 497 AACAGAACTT TTAGAATATA TGTACAATTG AGAGTATATA TGTATTACAA GTCTTACCGC 17090 .......... .......... .......... .......... .......... .......... 497 GTTATACCGG TCGTTCAAAG TTTCAGTTTG CCGATCTTCA GCTTCACTGT TTACAAGTGA 17150 .......... .......... .......... .......... .......... .......... 497 AAACATCAAT AAATTTGACA CAATTAACAA TGATGTATTA TCATAAGAGA AGTATCGGAA 17210 .......... .......... .......... .......... .......... .......... 497 ATTGATTTTT TTTTTTTGTA TAGTTCATTT TGATCCAAAA AAAGAAGGCA TCTTTAGGAC 17270 .......... .......... .......... .......... .......... .......... 497 TAGAAAAGTT GTGAATTAGG CATGCTGAGC TGAAAGGAGG CAAGTAATTA ATAAAGAAGG 17330 .......... .......... .......... .......... .......... .......... 497 GAGGCATTAC AAGCCGACTA TAAGAAAAGC AAAGTTTTGT AGACGCGATT ACCTATCTTA 17390 .......... .......... .......... .......... .......... .......... 497 CATCCAAGGA ACACTATGTA AGTCTCCCAT GCACACACCT TTAAACTCAG GAGGGGGACA 17450 .......... .......... .......... .......... .......... .......... 497 CTCTACCAAG CAAGGACCAC CTGCACCCAC TTGACAATAT GTTCCCTAAC TTCTTTCATT 17510 .......... .......... .......... .......... .......... .......... 497 GGGATTTGAT GCAATCTTTA CATAAAATAT TTAAACCTAC TCACAAGCTT CTAAGTAAAA 17570 .......... .......... .......... .......... .......... .......... 497 TACCTAAACA AATAAGAAAA AAACATCATA ATATTAGACC AAAGGAATTA AGCAAATGAC 17630 .......... .......... .......... .......... .......... .......... 497 ATTAAGCATG CTTCTTTTTC AATATGTTGA TCAAGTCATT CGCGTAGACA AATTCAGTTG 17690 .......... .......... .......... .......... .......... .......... 497 GCATTGCTGT TCATTTTTAA ACCATGAAAT AAACATAAGT AACTTTTTAT ATAGGCATAA 17750 .......... .......... .......... .......... .......... .......... 497 TACTTGTATT GGACCCTAAA CTTGGCTTCG AATTTTAACT TTGACCTCCA ACTTTCATAA 17810 .......... .......... .......... .......... .......... .......... 497 TGCACAAACA AGAAATTTAA CTATTCAACT TTTATATAAA TAAACGAGAT AATGCCCAAG 17870 || |||| ||||| .......... .......... .......... .......... ........AT AATGTCCAAG 509 TACCCCCTCA ACCTATGCCC GAAATCTCAG AGACACACTT ATACTATACT AAGGTCCTAT 17930 |||||||| | |||||| || ||||||||| ||| |||||| |||| ||||| ||| || ||| TACCCCCTTA GCCTATGTCC AAAATCTCAG AGATACACTT ATACCATACT AAGATCTTAT 569 TACCCCCCTG AACTTATTTT ATTAATAATT TTTTACCCCT TTTTAGCTTA CGTGACACTA 17990 ||||| |||| |||||| ||| |||||||||| |||||||||| ||| | || |||| ||||| TACCC-CCTG AACTTA-TTT ATTAATAATT TTTTACCCCT TTTAGACCTA CGTGGCACTA 627 TCTTGTGGGC CCAACGATGG TTGACTTTTT TTTTGAACTA GTGCCACGTA GGCTAAAAAG 18050 |||||||||| |||| | | | |||||||||| |||| ||||| |||||||||| |||||||||| TCTTGTGGGC CCAATGGTTG TTGACTTTTT TTTTAAACTA GTGCCACGTA GGCTAAAAAG 687 AGGTAGAAAA TTAC 18064 ||||| ||| |||| GGGTAG-AAA TTAC 700 hqPGS_C08HBa0197A05.1+_SGN-E540414+ (17859 18064) ******************************************************************************** EST sequence 86 -strand 605 n (File: SGN-E356529-) 1 AGGATAAAAA AAATGACATA TAGGACATGT GTGTCTATTT GTTCAACTTT ATACAAATTT 61 AAGTGTCTAC TTGTGCAAAT CCAAAGTTGA AGGTCATAAA TGTAATTCGA AGCCAAGTTA 121 AAGGGCATAT TTATGTATTA TGCCTACAAT CAATTAGTCT TATCACCTCA GCGACGCTTT 181 GATCTCCTGC GTTTACCAAG AAGCTTCAGC ATGTTATCGG TGACATCAGG AGGAGATTTA 241 TCATCTTCAC CATGATTCTT GTCAGATGTT TGAGTTAACC ATGCTAGTGC TTCTATTGCA 301 GCATCCTTTT CTGCAAGGGC TTTGTTTCTC TTTGGTTTAC CTACAAATTG CATTCCCTTG 361 AACTCTGCAA GTGCCCTAAA TTCATTTGTT TTTAGATGCT TTGTTTTGTA CTTGGGAGGG 421 GAGTGACCCG CCCTCATAAG TAGCGTCTGC AACAAACTCT TTGGGTTTGT CCCGTCCCTT 481 GTAAATCTAT CAGCGTCAGA ATCTTTAGGC TTCTTGTTTT CACGACCAAA CACAAACCTG 541 CCCTCAGACT GATCTCCTGA AACCAGTTCC TGAACAGCAA GCATAAGGTA TTTGCCTTCC 601 TTGTG Predicted gene structure (within gDNA segment 17421 to 23555): Exon 1 18219 18355 ( 137 n); cDNA 9 145 ( 137 n); score: 0.920 Intron 1 18356 20958 (2603 n); Pd: 0.000 (s: 0.90), Pa: 0.927 (s: 0) Exon 2 20959 20966 ( 8 n); cDNA 146 153 ( 8 n); score: 0.750 MATCH C08HBa0197A05.1+ SGN-E356529- 0.920 145 0.240 C PGS_C08HBa0197A05.1+_SGN-E356529- (18219 18355,20959 20966) Alignment (genomic DNA sequence = upper lines): AAAAATGACA TGTAGGACAT GTGTGTCTAT TTGTTCGACT TTATACAAGT TTAAGTGTCT 18278 |||||||||| | |||||||| |||||||||| |||||| ||| |||||||| | |||||||||| AAAAATGACA TATAGGACAT GTGTGTCTAT TTGTTCAACT TTATACAAAT TTAAGTGTCT 68 ACTTGTGCAC ACCCAAAGTT GAAGGGCATA AATGTAATTC GAATTCCAGT TAAAAAGCAT 18338 ||||||||| | |||||||| ||||| |||| |||||||||| ||| | ||| |||| |||| ACTTGTGCAA ATCCAAAGTT GAAGGTCATA AATGTAATTC GAAGCCAAGT TAAAGGGCAT 128 ATTTATGTAT TATGCCTTTT ATAGATATGC GATGATCTAA ATTGCTATCG ATACAATAAG 18398 |||||||||| ||||||| ATTTATGTAT TATGCCT... .......... .......... .......... .......... 145 CAGTTAAAAA TAATTCCAAG GCCATCTTGT TCAGTATAGT AGATGAAAAT ATGGCCATTT 18458 .......... .......... .......... .......... .......... .......... 145 TGACCACTAT TCAAAACTTT ACCACTTCCT CGTGATACCA CTTTTGTTTG CAAGACTAAC 18518 .......... .......... .......... .......... .......... .......... 145 ATTGAAGAAG TTGTCAGCAT TAACATCTTC ACCTACATAA TCCAGCTTCA ACAAACATAA 18578 .......... .......... .......... .......... .......... .......... 145 CAAAAATAAT TGTTAACCCC TCCTATTTTA TAATCTCGAA AATCCCTTTG TTTAAATATA 18638 .......... .......... .......... .......... .......... .......... 145 TATATATATA TATATAATCT CGAAAATATA TTCAAGCCAA CACGAAAAAG AACAAACCTT 18698 .......... .......... .......... .......... .......... .......... 145 AGGAACACCT TTGTAAACAT CTTGTCCATG TGGACTATTG ATGATAACTC TAGGTCTAGG 18758 .......... .......... .......... .......... .......... .......... 145 ATTCATAGTA TTGTCAGCAA TATCATCGTA TATGAATACA ATAATGTTTT CGTCTTTAAG 18818 .......... .......... .......... .......... .......... .......... 145 ACTACCTTTC TTGAGTATTT GGTAAGCATG ACATACGTCA GCCTGAAATC AATCAATAAA 18878 .......... .......... .......... .......... .......... .......... 145 ATCACCAAAC AAATAACATT TCATGATACA TTATTTAAAG AAAATTTTAG TTTTATTAAT 18938 .......... .......... .......... .......... .......... .......... 145 AGATGAGAAC CTGGTGCCTA TAATTAAACC ATCCATTAGA GCCGGCAACT AGGACAGCCC 18998 .......... .......... .......... .......... .......... .......... 145 TTTGGTCCCT ACAGTTTCTT CAGTTAAGAA TTTAGAGATA CTACGACCTT CAATGTTGGC 19058 .......... .......... .......... .......... .......... .......... 145 ACAAATTGAG AGCACAACAA CAAGTACAAC ACACACATTG TACTTAAATA TCATTGTATT 19118 .......... .......... .......... .......... .......... .......... 145 GTGTTTTAAT TTATGGTAAA TTAACAAGCT AGGGGACTAT TGATCAGTTG TATGAATCAT 19178 .......... .......... .......... .......... .......... .......... 145 ATTGATGTAT GAGAAATATA TAGGACTTCA AGCTCCAACA TAAGAGAATG ACGTAGAATT 19238 .......... .......... .......... .......... .......... .......... 145 CAAAGGTAAC AATTACCATA AGAAGTCATG AAATGTGTCA AAGATATATT CTCATTGATT 19298 .......... .......... .......... .......... .......... .......... 145 AATTTACAAG AAATTTATCC TCATGACTTA TGAAAGTTTT GTCATGTTAT CACATTGTTA 19358 .......... .......... .......... .......... .......... .......... 145 TTGTACGTTT TCTTTTTGGA GTTAATAACT TTGATTGGTC ACTCAACTAT CAATTGTTTT 19418 .......... .......... .......... .......... .......... .......... 145 CACAGAAGTC ATTCAACTTT CATTTTCAAC TAAAAAGTCA CTCACTATGA TTTCTTTGCC 19478 .......... .......... .......... .......... .......... .......... 145 CAGAAAGTCA TTCAACTTTC ATTTTCAACT CAAAAGTTAC TCAACTTCTT TACACAGAAA 19538 .......... .......... .......... .......... .......... .......... 145 GTCACTTAAT CTATTTAATT GTTTTTCATT AAAATTTAGT GACATGAAAT TTTAATTATT 19598 .......... .......... .......... .......... .......... .......... 145 ATTATAAATT TTAAGAATCA AATATATATC CATTTAAACC ATTTAATGAC CCGCTCCATT 19658 .......... .......... .......... .......... .......... .......... 145 TAATCCGATC CGTTAAAAAT ATAATATTAA ACATTTTATT TTACCATTAA TCCCCCTAAA 19718 .......... .......... .......... .......... .......... .......... 145 TCATTCCCCA TTGAACATTT TATTTTACCA TTAATTCACT AAAAGAATGT GGGAGACAAG 19778 .......... .......... .......... .......... .......... .......... 145 GGAGAATGAT TTAGGGAATT AATAGTAAAA TAAAATGTTC AATATTATAT TTTTAACCGG 19838 .......... .......... .......... .......... .......... .......... 145 TCGAGTTAAA TGGAGCGGGT CATTAAATGG GTATATATTC GATTATTAAA ATTTTGGTTA 19898 .......... .......... .......... .......... .......... .......... 145 ATGATTAAAA TTTTATGTCA ATAAATTTTA ATGAAAATAA CAATTAAATA GGTTAAGTGA 19958 .......... .......... .......... .......... .......... .......... 145 CTTTTTGGGC AAAGAACTCA TAGTTGAATG ACTTTTGAGT TGAAAATGAA AGTTGAGTGA 20018 .......... .......... .......... .......... .......... .......... 145 CTTTCTGTGC AAAAAAGTTA TAATTGAGTG ACTTTTGAGT TGAAAATGGA TGTTGAATGA 20078 .......... .......... .......... .......... .......... .......... 145 CTTTTTGTGA AAACAATTGA TAGTTGAGTG AGCATCAAAG TAATTAAATC TTTCTTTTTA 20138 .......... .......... .......... .......... .......... .......... 145 TGTCCATGAG AGTGGACCGG TACACTCCAT TCGTTTCAAT TTATATCACA TTGTTAGTCT 20198 .......... .......... .......... .......... .......... .......... 145 TGACACAATT CAAAGTATTA AAGAGGTCTT TTGAAATTTG TGATCGAAAA AATATCCTTT 20258 .......... .......... .......... .......... .......... .......... 145 GACCATTTGT ATTGATTATT ATTTCATTAG GGGTAAAATA AAAAATTTAA AAGTTAAATT 20318 .......... .......... .......... .......... .......... .......... 145 ATTTCCAATT GTAGAAATGT TGTATTTTAT TTTTTTTGGA TTGACTAAAA GACATAACAA 20378 .......... .......... .......... .......... .......... .......... 145 TAAAAATAAC TTTTAGCGGC ATTAAATATT AATATTAATA TTAATAAAGA GTGTTAAAGT 20438 .......... .......... .......... .......... .......... .......... 145 CTTTACTATC ATTAGAATCA ATGTCTCTAA GACTTTAAAG ACATACACAA AAGGTACTAA 20498 .......... .......... .......... .......... .......... .......... 145 TTACCGCTAA ATATACATAT ATATTTAGTG GTAATTAATT CTTAATTGCT ACTAATGATA 20558 .......... .......... .......... .......... .......... .......... 145 ATTTTTTATG TAGTGACGAA AAATGTCTCA CATAAATAGG GACAAAGAAA ATATAATTTA 20618 .......... .......... .......... .......... .......... .......... 145 AAGGAAAAAC TACATAATTA AGCAAACAAA ACTACTACTA TATATTATAT ACACAGTCTA 20678 .......... .......... .......... .......... .......... .......... 145 GAGATAGACA CTACAAGAAA AATGTTAATT ACATGGGGAT TTTCCTGGGA TTAGTATGAA 20738 .......... .......... .......... .......... .......... .......... 145 AATTCGTAGG AAATTTATTT TCTTGCAAAA ATTTTTATAC TAATTTTCAG AAAAATCCCT 20798 .......... .......... .......... .......... .......... .......... 145 AAATAATTCA CACTTTTCTT GTAGTGAGAT ACTTTCAAAA TAGGAGATAT TACGCGGATA 20858 .......... .......... .......... .......... .......... .......... 145 AGCAAATATT TACTAGTTAA ATAGCTAACA TAGTTGTAGT TTGAATTAAT TACCATTGAC 20918 .......... .......... .......... .......... .......... .......... 145 AACCTTTTTT TAGCTATAAT TACGTATAAT TATATGACAG ACATACAA 20966 ||| ||| .......... .......... .......... .......... ACAATCAA 153 hqPGS_C08HBa0197A05.1+_SGN-E356529- (18219 18355) ******************************************************************************** EST sequence 9 +strand 649 n (File: SGN-E539761+) 1 TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 61 CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 121 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 181 TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 241 AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 301 AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 361 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 421 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 481 CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 541 CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 601 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT Predicted gene structure (within gDNA segment 29964 to 31948): Exon 1 30690 31338 ( 649 n); cDNA 1 649 ( 649 n); score: 0.991 MATCH C08HBa0197A05.1+ SGN-E539761+ 0.991 649 1.000 C PGS_C08HBa0197A05.1+_SGN-E539761+ (30690 31338) Alignment (genomic DNA sequence = upper lines): TACGTCAGAA ACTGGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 30749 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 60 CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 30809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 120 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 30869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 180 TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 30929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 240 AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 30989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 300 AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 31049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 360 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 31109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 420 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGCC AGGGTTGTTG CCAGAGGTTT 31169 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| | |||||||| GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 480 CAACCAAAGA GAGGGAGTGG ACTATAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 31229 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 540 CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAC AACTTGATGT 31289 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 600 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 31338 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 649 hqPGS_C08HBa0197A05.1+_SGN-E539761+ (30690 31338) ******************************************************************************** EST sequence 23 +strand 385 n (File: SGN-E284788+) 1 ACGTTAGAAA CTAGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 61 GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CTGAAACTGA TATTCCAGAA 121 TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGTCAAGGAG GGTTGGAGTT 181 CGGCCACCTA CGAGGTATGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGCTGCTGAA 241 GAGGTAGATA CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTTC TGATTCTGAA 301 AAATGGTTTG CCGATATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 361 CTGGTCATAC AGTCTTCGGG GAGAA Predicted gene structure (within gDNA segment 29974 to 31802): Exon 1 30691 31075 ( 385 n); cDNA 1 385 ( 385 n); score: 0.984 MATCH C08HBa0197A05.1+ SGN-E284788+ 0.984 385 1.000 C PGS_C08HBa0197A05.1+_SGN-E284788+ (30691 31075) Alignment (genomic DNA sequence = upper lines): ACGTCAGAAA CTGGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 30750 |||| ||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTAGAAA CTAGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 60 GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CTGAAACTGA TATTCCAGAA 30810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CTGAAACTGA TATTCCAGAA 120 TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGCCAAGGAG GGTTGGAGTT 30870 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGTCAAGGAG GGTTGGAGTT 180 CGGCCACCTA CGAGGTATGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGTTGCTGAA 30930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CGGCCACCTA CGAGGTATGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGCTGCTGAA 240 GAGGTAGATA CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTTC TGATTCTGAA 30990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTAGATA CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTTC TGATTCTGAA 300 AAATGGTTTG CCGCTATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 31050 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTTG CCGATATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 360 CTGGTCATAC AGCCTTCGGG GAGAA 31075 |||||||||| || ||||||| ||||| CTGGTCATAC AGTCTTCGGG GAGAA 385 hqPGS_C08HBa0197A05.1+_SGN-E284788+ (30691 31075) ******************************************************************************** EST sequence 26 +strand 808 n (File: SGN-E343338+) 1 GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 61 TTAAGCAGTC TCCAAGGCAG TGGTATAAAA GGTTTGACAG CTATATGGTG AAGTTGGGCT 121 ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAATGAT GATTCATTCA 181 TCTATCTGGT GCTTTATGTA GATGATATGT TGATAGCTGC AAAGAAGAAG TATGACATTC 241 AGAAGCTGAA GGGTTTACTT AGTGCTGAGT TTGAGATGAA GGATCTGGGA GCCGCTCGGA 301 AGATTTTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 361 GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCCATTGATA 421 CCCCCAGTGC TGCCAATATC CATCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 481 AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGCCGTAAG AAGTTTGATG TATGCTATGG 541 TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 601 CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 661 ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 721 ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTGGGAG 781 GATCTGTCGT CAGTTGGAAG GCAACTTT Predicted gene structure (within gDNA segment 30749 to 32766): Exon 1 31349 32156 ( 808 n); cDNA 1 808 ( 808 n); score: 0.998 MATCH C08HBa0197A05.1+ SGN-E343338+ 0.998 808 1.000 C PGS_C08HBa0197A05.1+_SGN-E343338+ (31349 32156) Alignment (genomic DNA sequence = upper lines): GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 31408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 60 TTAAGCAGTC TCCAAGGCAG TGGTATAAAA GGTTTGACAG CTATATGGTG AAGTTGGGCT 31468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCAGTC TCCAAGGCAG TGGTATAAAA GGTTTGACAG CTATATGGTG AAGTTGGGCT 120 ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAATGAT GATTCATTCA 31528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAATGAT GATTCATTCA 180 TCTATCTGGT GCTTTATGTA GATGATATGT TGATAGCTGC AAAGAAGAAG TATGACATTC 31588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATCTGGT GCTTTATGTA GATGATATGT TGATAGCTGC AAAGAAGAAG TATGACATTC 240 AGAAGCTGAA GGGTTTACTT AGTGCTGAGT TTGAGATGAA GGATCTGGGA GCCGCTCGGA 31648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTGAA GGGTTTACTT AGTGCTGAGT TTGAGATGAA GGATCTGGGA GCCGCTCGGA 300 AGATTTTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 31708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 360 GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCCATTGATA 31768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCCATTGATA 420 CCCCCAGTGC TGCCAATATC CATCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 31828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCCAGTGC TGCCAATATC CATCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 480 AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGCCGTAGG AAGTTTGATG TATGCTATGG 31888 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGCCGTAAG AAGTTTGATG TATGCTATGG 540 TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 31948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 600 CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 32008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 660 ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 32068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 720 ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTTGGAG 32128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTGGGAG 780 GATCTGTCGT CAGTTGGAAG GCAACTTT 32156 |||||||||| |||||||||| |||||||| GATCTGTCGT CAGTTGGAAG GCAACTTT 808 hqPGS_C08HBa0197A05.1+_SGN-E343338+ (31349 32156) ******************************************************************************** EST sequence 36 +strand 575 n (File: SGN-E301194+) 1 CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGAAATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATG Predicted gene structure (within gDNA segment 27698 to 35999): Exon 1 32803 33017 ( 215 n); cDNA 1 219 ( 219 n); score: 0.898 Intron 1 33018 33847 ( 830 n); Pd: 0.271 (s: 0.75), Pa: 0.000 (s: 0) Exon 2 33848 33872 ( 25 n); cDNA 220 242 ( 23 n); score: 0.760 Intron 2 33873 34931 (1059 n); Pd: 0.901 (s: 0), Pa: 0.000 (s: 0) Exon 3 34932 34965 ( 34 n); cDNA 243 276 ( 34 n); score: 0.706 MATCH C08HBa0197A05.1+ SGN-E301194+ 0.898 274 0.477 C PGS_C08HBa0197A05.1+_SGN-E301194+ (32803 33017,33848 33872,34932 34965) Alignment (genomic DNA sequence = upper lines): CCTGTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GGAAACCCTA TTCTGTAATT 32862 ||| |||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTGTTTTTGC CTCTCCATAA TAAAACTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTG 32922 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 120 TTGGTGAACC ACGTAAATCT GTTGTCTTAT TTTTCGCG-T T-TATATTTT CTCGTATTAT 32980 |||||||||| |||||||||| |||||||| | |||||||| | | |||||||| |||||||||| TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 180 CTCAAATTCC GCACAACA-- CTAGACATTG ATAAATATTG CAATATATTT ATTCTCCTTC 33038 |||||||| | |||||||| || | ||| |||| ||| CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATC. .......... .......... 219 TTTTACAAGA AATTTCTTCA CACCTGTGAC AAGTTTTTCA TGTCCTTTTT TTTGTTTTTC 33098 .......... .......... .......... .......... .......... .......... 219 ACCTGGTGTT TGGAATCTGT ATTGGAACCC GTATTAGAGG TTCAATGAAA TTTGGATCCA 33158 .......... .......... .......... .......... .......... .......... 219 TGTCATTTTT TTTATTTTTC ACTTGGTGTT CGGAGCCGGT ATAAACTGTA TTGGAACCCG 33218 .......... .......... .......... .......... .......... .......... 219 TATTGGAGGT TAAATTAAAT TTCAGATCCA TGTCAACTTT TTTTGTTTCC TACCGATGTC 33278 .......... .......... .......... .......... .......... .......... 219 CCGAGTCTAT ATTGGAGGTC CGACTAAGCT CGGATTTATG TATAAAAATA TTGGTTCCAC 33338 .......... .......... .......... .......... .......... .......... 219 ACTCAATGTG CGGAACCTGT ATGGAGTTCC GACTAAATCA AAATTCATGT CAATTTTTTG 33398 .......... .......... .......... .......... .......... .......... 219 GTTTCCGCCA GCCACCGTTT CTCCTAAATT TGTCCGACTA TAATCTGGAT CCATATTTTT 33458 .......... .......... .......... .......... .......... .......... 219 TTTATTTCTC ACTCGGTGTA TAGAGTCCAT ATTGGAGCTC CGACTAAGTG CCTATTTGGA 33518 .......... .......... .......... .......... .......... .......... 219 TTGACTTATT TTAGGTGTTT TTAAGCCAAA ATAACTTTTA AGCAATTTTG AAGTGTTTGG 33578 .......... .......... .......... .......... .......... .......... 219 GTAAAGTTAA AAAGTGCTTC TAAGCACTTG TTGTAAAGCC AAAATAACTA AATAAGTCAT 33638 .......... .......... .......... .......... .......... .......... 219 AAGTTAGAAA TTCTAACTTA TGGCTTTTGG CTTATAAGTC ATAAGCCAAA AGCTAATCCA 33698 .......... .......... .......... .......... .......... .......... 219 AACAGACTCT AAATCATCTG GGTCGCGCAC TGCATGACTT TTTCGGGGGT GACACTTCTA 33758 .......... .......... .......... .......... .......... .......... 219 ATAAGATTTT CTTCATGTCT AGGGCTCGAA CCGAGACCTT TGGTTAAGAG TGCAACAACC 33818 .......... .......... .......... .......... .......... .......... 219 CCACCTCCAG CCCACAATTC ATGCTGGTTA TGTTTTCATG TCATTATAAC ATCCGTACTA 33878 | | ||||||| | | ||||| ||| .......... .......... .........A TCTTTTCATA T--TCATAAC CTCC...... 242 TACACTCATG TTCTCTAATT TTTTTAAAAA TTATTTTGGT ATTGTGATGC ACATAATTAC 33938 .......... .......... .......... .......... .......... .......... 242 CAAAATCAAT TATTTTAACA AACCAAACGA CCATTTAGTA ATCACCCACA CAAGGTCAAA 33998 .......... .......... .......... .......... .......... .......... 242 TTAAAGATAG ATAATTATAA TTACTCCAAT TTTAGAGGGA TTAAAACCAA ACATGTGATT 34058 .......... .......... .......... .......... .......... .......... 242 CCAAGGAAAC GAGGTTCTAG GTTTGTTCTC TCTCACCATA TTTTAAAGGA ATTATGTACT 34118 .......... .......... .......... .......... .......... .......... 242 ATGAAAATGA AATGCCACAT AATTATGATG ACTAAAGGTT AAGAAAGAAT TAACTAAATC 34178 .......... .......... .......... .......... .......... .......... 242 ATTCCAAACA AACAAATTCA CATAAAAATA GATTCTCAAG TCAAATCAAC ATTGTGTCTA 34238 .......... .......... .......... .......... .......... .......... 242 CGGAAAGTTT TATGATATAT ATACAAAGTC AGGTGATGTT CTCTTGAAGT TAACAATTAA 34298 .......... .......... .......... .......... .......... .......... 242 GTTTGTCCGT AGTGTATAAG TTAAGTTTCA AACAAAATTT TGGAACAGAG ATTCCGAAAG 34358 .......... .......... .......... .......... .......... .......... 242 CACAAACTTT TTGTTAGCCC CTCCTTACCT GCTGCCTATT CTGACCGGCC ATCGGAAGTA 34418 .......... .......... .......... .......... .......... .......... 242 TACAATAACA ATGTCGAAGC ATAAAGCACC GACTGATCGT GATACTACTA GTGTAATGTC 34478 .......... .......... .......... .......... .......... .......... 242 CTCCAATGGC ACCACCTTGA CAGAAATAAT AGAAGTAACA AATAATGCAC GAAATAAGAG 34538 .......... .......... .......... .......... .......... .......... 242 ATCTATTTCC AATAAGATGT GTTAGAATAC TGACCCCAGA TTTGCCTAAG GAACAAGTTT 34598 .......... .......... .......... .......... .......... .......... 242 ATTCTAGTTG TTCCTTTGCA AATAAAAGTA GTTACGTTAT CTAAAGCAAA CAAAGTAACG 34658 .......... .......... .......... .......... .......... .......... 242 ACACAATATT TTGTTGCAGA AAACCCCAGC TCATAATGGA TAAAAAATCA TGACATACAC 34718 .......... .......... .......... .......... .......... .......... 242 CTCTGTAGGA TTTAACTCCA CTTCATCACT GAGCCTTAAC AAAAGATTAC AACCATATAT 34778 .......... .......... .......... .......... .......... .......... 242 AACCTGAAGT TGAAAATATT TTATCAAAGC AAAATTAATT TTTTGGGGAG GGGGTGAGGT 34838 .......... .......... .......... .......... .......... .......... 242 TGGGGGTGGG GGGTGGGTGG GGGTTAGGGA TCGGGTGAAA AAATAAAATT TTGAAATTGA 34898 .......... .......... .......... .......... .......... .......... 242 AATATTTTTT TATAATTGAT GTTTTTCCAA AAAAAAAATG TAATTTGAAA TTGGAGGAAA 34958 ||| || ||| || || || || || .......... .......... .......... ...AAATATT TAAATTAAAC TTTAAGAAAT 269 GTTTTGG 34965 |||||| CTTTTGG 276 hqPGS_C08HBa0197A05.1+_SGN-E301194+ (32803 33017,33848 33872,34932 34965) ******************************************************************************** EST sequence 34 +strand 641 n (File: SGN-E301078+) 1 CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGATATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATGATTTA TTGTCGTATG TCTTTGAATT 601 TTGTAATTGT TACATTTTAT TATTCATTAC AATTTACATA T Predicted gene structure (within gDNA segment 27635 to 34720): Exon 1 32803 33017 ( 215 n); cDNA 1 219 ( 219 n); score: 0.879 Intron 1 33018 33847 ( 830 n); Pd: 0.271 (s: 0.75), Pa: 0.000 (s: 0) Exon 2 33848 33872 ( 25 n); cDNA 220 242 ( 23 n); score: 0.760 MATCH C08HBa0197A05.1+ SGN-E301078+ 0.879 240 0.374 C PGS_C08HBa0197A05.1+_SGN-E301078+ (32803 33017,33848 33872) Alignment (genomic DNA sequence = upper lines): CCTGTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GGAAACCCTA TTCTGTAATT 32862 ||| |||||| ||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTGTTTTTGC CTCTCCATAA TAAAACTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTG 32922 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 120 TTGGTGAACC ACGTAAATCT GTTGTCTTAT TTTTCGCG-T T-TATATTTT CTCGTATTAT 32980 |||||||||| ||||||| || | |||||| |||||||| | | |||||||| |||||||||| TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 180 CTCAAATTCC GCACAACA-- CTAGACATTG ATAAATATTG CAATATATTT ATTCTCCTTC 33038 |||||||| | |||||||| || | ||| |||| ||| CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATC. .......... .......... 219 TTTTACAAGA AATTTCTTCA CACCTGTGAC AAGTTTTTCA TGTCCTTTTT TTTGTTTTTC 33098 .......... .......... .......... .......... .......... .......... 219 ACCTGGTGTT TGGAATCTGT ATTGGAACCC GTATTAGAGG TTCAATGAAA TTTGGATCCA 33158 .......... .......... .......... .......... .......... .......... 219 TGTCATTTTT TTTATTTTTC ACTTGGTGTT CGGAGCCGGT ATAAACTGTA TTGGAACCCG 33218 .......... .......... .......... .......... .......... .......... 219 TATTGGAGGT TAAATTAAAT TTCAGATCCA TGTCAACTTT TTTTGTTTCC TACCGATGTC 33278 .......... .......... .......... .......... .......... .......... 219 CCGAGTCTAT ATTGGAGGTC CGACTAAGCT CGGATTTATG TATAAAAATA TTGGTTCCAC 33338 .......... .......... .......... .......... .......... .......... 219 ACTCAATGTG CGGAACCTGT ATGGAGTTCC GACTAAATCA AAATTCATGT CAATTTTTTG 33398 .......... .......... .......... .......... .......... .......... 219 GTTTCCGCCA GCCACCGTTT CTCCTAAATT TGTCCGACTA TAATCTGGAT CCATATTTTT 33458 .......... .......... .......... .......... .......... .......... 219 TTTATTTCTC ACTCGGTGTA TAGAGTCCAT ATTGGAGCTC CGACTAAGTG CCTATTTGGA 33518 .......... .......... .......... .......... .......... .......... 219 TTGACTTATT TTAGGTGTTT TTAAGCCAAA ATAACTTTTA AGCAATTTTG AAGTGTTTGG 33578 .......... .......... .......... .......... .......... .......... 219 GTAAAGTTAA AAAGTGCTTC TAAGCACTTG TTGTAAAGCC AAAATAACTA AATAAGTCAT 33638 .......... .......... .......... .......... .......... .......... 219 AAGTTAGAAA TTCTAACTTA TGGCTTTTGG CTTATAAGTC ATAAGCCAAA AGCTAATCCA 33698 .......... .......... .......... .......... .......... .......... 219 AACAGACTCT AAATCATCTG GGTCGCGCAC TGCATGACTT TTTCGGGGGT GACACTTCTA 33758 .......... .......... .......... .......... .......... .......... 219 ATAAGATTTT CTTCATGTCT AGGGCTCGAA CCGAGACCTT TGGTTAAGAG TGCAACAACC 33818 .......... .......... .......... .......... .......... .......... 219 CCACCTCCAG CCCACAATTC ATGCTGGTTA TGTTTTCATG TCATTATAAC ATCC 33872 | | ||||||| | | ||||| ||| .......... .......... .........A TCTTTTCATA T--TCATAAC CTCC 242 hqPGS_C08HBa0197A05.1+_SGN-E301078+ (32803 33017,33848 33872) ******************************************************************************** EST sequence 27 -strand 702 n (File: SGN-E549201-) 1 GTCAATGAAA ATAGCAAGAC CCATGCAATT TTTATCNTCN TGAATTCCAG CAGTTTCTAA 61 GTCCATCACA AGTTTATTGA ATGCACCTAG ATGGTCTTGC AACAAAGTAC CTGAATCCAT 121 CTTAAATGTA TGAAGATGTC ATTGTAACAA CATTATTGTA CTCTAGCTTT TCCCATAACT 181 CCTTGGTCGT CTCTTCGGTA CTTGTACTCA CTTCACAAAG TACGTTAGGT GCAAGGGACA 241 GTTGGATTAC ACGCAATGCA TCTCCTTCAA TCTTCTCCTT ATCGAAATTC GATATCTTAT 301 CGAGGTATTT TTCGTCAATA GCATGGATTG AACCTTCCCT CCGCAATAAC TCCATCATCT 361 GGATTTTTCA GATACTGAAG TTGTTTTGCC CACTAAATCT ATCAATTTTA AACTTCATGG 421 AACTCATTTC TTACTTGTTC TTCCTTTTCT ACTACAATGT ATTCGGAACT ACAGAAAATG 481 AAAGTAATTA TTTTCTGATG TGGAACTTTG GCTCTGATAC CAATTGTTAG CGGAAACGTG 541 AAATCAAAGA ATAAGGAAGA AAAAAATATT TAACGTGGTT AGGGTGAAAA TGATCCTACA 601 TGCACCAAAG AACAACTACA CCAATATTTA TTTCACTCTA CAAAGAACAC AAGTGAAATA 661 CTAGAACACA AATGCCTTAG AATGTGCCTC GTGCGCACGA GG Predicted gene structure (within gDNA segment 44270 to 40086): Exon 1 42891 42730 ( 162 n); cDNA 1 157 ( 157 n); score: 0.846 Intron 1 42729 42700 ( 30 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.74) ?? Exon 2 42699 42351 ( 349 n); cDNA 158 508 ( 351 n); score: 0.883 Intron 2 42350 42311 ( 40 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.92) Exon 3 42310 42162 ( 149 n); cDNA 509 656 ( 148 n); score: 0.899 MATCH C08HBa0197A05.1- SGN-E549201- 0.877 660 0.940 C PGS_C08HBa0197A05.1-_SGN-E549201- (42891 42730,42699 42351,42310 42162) Alignment (genomic DNA sequence = upper lines): GTCAATGAAA ATAGTAAAGA ACATGCAAGT GTCTCCTCGT CCTTTTTAAT TCCAGCAGTT 42832 |||||||||| |||| || ||||||| | | | || | | | ||| |||||||||| GTCAATGAAA ATAGCAAGAC CCATGCAA-T -TTTTATCNT CN---TGAAT TCCAGCAGTT 55 TGTAAGTCCA TAACAAGTTT ATTGAACGCA TCTAGATGGT CTTGCAACAA AGTACCTGAA 42772 | |||||||| | |||||||| |||||| ||| ||||||||| |||||||||| |||||||||| TCTAAGTCCA TCACAAGTTT ATTGAATGCA CCTAGATGGT CTTGCAACAA AGTACCTGAA 115 TCCATCTTAA ATGTATGAAG ACGCCGTTGT AACAACATCC TTGTTGTCAC TGACTGGTCC 42712 |||||||||| |||||||||| | | | |||| |||||||| || TCCATCTTAA ATGTATGAAG ATGTCATTGT AACAACATTA TT........ .......... 157 TGGTAAAGCC CT-T-C-C-A GCTTTTCCCA TAACTCTTTG GCCGTCTCTT CGGTACTTGT 42656 | | | | |||||||||| |||||| ||| | |||||||| |||||||||| .......... ..GTACTCTA GCTTTTCCCA TAACTCCTTG GTCGTCTCTT CGGTACTTGT 205 ACTCACTTTA CAAAGTACGT TAGGTGCAAG GGACAGTTGG ATTGCACTCA ATGCATCTCC 42596 |||||||| | |||||||||| |||||||||| |||||||||| ||| ||| || |||||||||| ACTCACTTCA CAAAGTACGT TAGGTGCAAG GGACAGTTGG ATTACACGCA ATGCATCTCC 265 TTCAATCTTT TCCTTGTCGG AATCCGATAT CTTATCGGGG TACTTTCCGT CAATAGCATG 42536 ||||||||| ||||| ||| ||| |||||| ||||||| || || ||| ||| |||||||||| TTCAATCTTC TCCTTATCGA AATTCGATAT CTTATCGAGG TATTTTTCGT CAATAGCATG 325 GATTGAACCT TCCCTCCGCA GTAACGCTAT CATCTGGATT TTCCAGATAT TGAAGTTGTT 42476 |||||||||| |||||||||| |||| | || |||||||||| || |||||| |||||||||| GATTGAACCT TCCCTCCGCA ATAACTCCAT CATCTGGATT TTTCAGATAC TGAAGTTGTT 385 GCGCCCACTA AATCTATCAA TTTCAAACTT CATGGAACTC ATTTTTTTTA TTTGTTCTTC 42416 |||||||| |||||||||| ||| |||||| |||||||||| | ||| ||| ||||||||| TTGCCCACTA AATCTATCAA TTTTAAACTT CATGGAACTC A--TTTCTTA CTTGTTCTTC 443 CTTTTCTACT ACAATGTATT TGGAACTACA GAAAACCAAA GTAATCCTTT TCTGATGTAG 42356 |||||||||| |||||||||| ||||||||| ||||| ||| ||||| ||| |||||||| | CTTTTCTACT ACAATGTATT CGGAACTACA GAAAATGAAA GTAATTATTT TCTGATGTGG 503 AAGTTCAGAC TGTGCTGCAA CCACAGAGCA TACTAAGACA AAACCTTGCT CTGATACCAA 42296 || || | ||| |||||||||| AACTT..... .......... .......... .......... .....TGGCT CTGATACCAA 523 TTGTTAGCGG AAACGTGAAA CTAAAGAACA AGGAAGAACA ACAATATTTA ACGTGGTTCG 42236 |||||||||| |||||||||| |||||| | |||||||| | | |||||||| |||||||| | TTGTTAGCGG AAACGTGAAA TCAAAGAATA AGGAAGAA-A AAAATATTTA ACGTGGTTAG 582 GATCAAAATG ATCCTACGTC CACCAAAGAA CAACTGCACC AATATTTATT TCACTATACA 42176 | | |||||| ||||||| | |||||||||| ||||| |||| |||||||||| ||||| |||| GGTGAAAATG ATCCTACATG CACCAAAGAA CAACTACACC AATATTTATT TCACTCTACA 642 AAGAATATAA GTGA 42162 ||||| | || |||| AAGAACACAA GTGA 656 hqPGS_C08HBa0197A05.1-_SGN-E549201- (42891 42730,42699 42351,42310 42162) ******************************************************************************** EST sequence 22 -strand 535 n (File: SGN-E309163-) 1 GCTTTTCCCA TAACTCCTTG GTCGTCTCTT CGGTACTTGT ACTCACTTCA CAAAGTACGT 61 TAGGTGCAAG GGACAGTGGA TTACACGCAA TGCATCTCCT TCAATCTTCT CCTTATCGAA 121 ATTCGATATC TTATCGAGGT ATTTTTCGTC AATAGCATGG ATTGAACCTT CCCTCCGCAA 181 TAACTCCATC ATCTGGATTT TTCAGATACT GAAGTTGTTT TGCCCACTAA ATCTATCAAT 241 TTTAAACTTC ATGGAACTCA TTTCTTACTT GTTCTTCCTT TTCTACTACA ATGTATTCGG 301 AACTACAGAA AATGAAAGTA ATTATTTTCT GATGTGGAAC TTTGGCTCTG ATACCAATTG 361 TTAGCGGAAA CGTGAAATCA AAGAATAAGG AAGAAAAAAA TATTTAACGT GGTTAGGGTG 421 AAAATGATCC TACATGCACC AAAGAACAAC TACACCAATA TTTATTTCAC TCTACAAAGA 481 ACACAAGTGA AATACTAGAA CACAAATGCC TTAGAATGTG CCTCGTGCGC ACGAG Predicted gene structure (within gDNA segment 43305 to 40096): Exon 1 42695 42351 ( 345 n); cDNA 1 342 ( 342 n); score: 0.907 Intron 1 42350 42311 ( 40 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.92) Exon 2 42310 42162 ( 149 n); cDNA 343 490 ( 148 n); score: 0.899 MATCH C08HBa0197A05.1- SGN-E309163- 0.905 494 0.923 C PGS_C08HBa0197A05.1-_SGN-E309163- (42695 42351,42310 42162) Alignment (genomic DNA sequence = upper lines): GCTTTTCCCA TAACTCTTTG GCCGTCTCTT CGGTACTTGT ACTCACTTTA CAAAGTACGT 42636 |||||||||| |||||| ||| | |||||||| |||||||||| |||||||| | |||||||||| GCTTTTCCCA TAACTCCTTG GTCGTCTCTT CGGTACTTGT ACTCACTTCA CAAAGTACGT 60 TAGGTGCAAG GGACAGTTGG ATTGCACTCA ATGCATCTCC TTCAATCTTT TCCTTGTCGG 42576 |||||||||| |||||| ||| ||| ||| || |||||||||| ||||||||| ||||| ||| TAGGTGCAAG GGACAG-TGG ATTACACGCA ATGCATCTCC TTCAATCTTC TCCTTATCGA 119 AATCCGATAT CTTATCGGGG TACTTTCCGT CAATAGCATG GATTGAACCT TCCCTCCGCA 42516 ||| |||||| ||||||| || || ||| ||| |||||||||| |||||||||| |||||||||| AATTCGATAT CTTATCGAGG TATTTTTCGT CAATAGCATG GATTGAACCT TCCCTCCGCA 179 GTAACGCTAT CATCTGGATT TTCCAGATAT TGAAGTTGTT GCGCCCACTA AATCTATCAA 42456 |||| | || |||||||||| || |||||| |||||||||| |||||||| |||||||||| ATAACTCCAT CATCTGGATT TTTCAGATAC TGAAGTTGTT TTGCCCACTA AATCTATCAA 239 TTTCAAACTT CATGGAACTC ATTTTTTTTA TTTGTTCTTC CTTTTCTACT ACAATGTATT 42396 ||| |||||| |||||||||| | ||| ||| ||||||||| |||||||||| |||||||||| TTTTAAACTT CATGGAACTC A--TTTCTTA CTTGTTCTTC CTTTTCTACT ACAATGTATT 297 TGGAACTACA GAAAACCAAA GTAATCCTTT TCTGATGTAG AAGTTCAGAC TGTGCTGCAA 42336 ||||||||| ||||| ||| ||||| ||| |||||||| | || || CGGAACTACA GAAAATGAAA GTAATTATTT TCTGATGTGG AACTT..... .......... 342 CCACAGAGCA TACTAAGACA AAACCTTGCT CTGATACCAA TTGTTAGCGG AAACGTGAAA 42276 | ||| |||||||||| |||||||||| |||||||||| .......... .......... .....TGGCT CTGATACCAA TTGTTAGCGG AAACGTGAAA 377 CTAAAGAACA AGGAAGAACA ACAATATTTA ACGTGGTTCG GATCAAAATG ATCCTACGTC 42216 |||||| | |||||||| | | |||||||| |||||||| | | | |||||| ||||||| | TCAAAGAATA AGGAAGAA-A AAAATATTTA ACGTGGTTAG GGTGAAAATG ATCCTACATG 436 CACCAAAGAA CAACTGCACC AATATTTATT TCACTATACA AAGAATATAA GTGA 42162 |||||||||| ||||| |||| |||||||||| ||||| |||| ||||| | || |||| CACCAAAGAA CAACTACACC AATATTTATT TCACTCTACA AAGAACACAA GTGA 490 hqPGS_C08HBa0197A05.1-_SGN-E309163- (42695 42351,42310 42162) ******************************************************************************** EST sequence 89 +strand 540 n (File: SGN-E545402+) 1 TTTTTTTTTT TTTTTTTCGT TGGGTAAATA TATTGCATAC AATCATTTAT ATTTCTTTTC 61 AAAAGAAGTA TATTNTGAAC GTTATCAGTA GCTGCTGAAC CAATCTTTTC ATGAATGTAA 121 TATATAGAAT ACAACAAGAG TCTAAGACTC ATTTATTGTC ATAGACTCCA CTATTGCATG 181 ATGTTGTTAG TATATAATCA TCATCATTAT CATGTACTTA CTCAACAATG GATGCAGTTG 241 CCTTTTCTTT GGACTTCGAC ATAGGAATAT CTCGTTCAAA GTGCACATTC TTTTGACAGC 301 CCCAACACTC CCTATTCTTT TTGTTCACAC GAGACTTTGA TCTGTACTTC AGTTTGCTCC 361 TCCCCTGTTG GCTAGTACGA CCTCTTACAA AGAGTCCACT AGCTTCGTCA CTTTTGTCTC 421 CTTTCAAAAT GCATCAAACA TCACAAGAGT TAAGTGCTTA CCTCACTTGC TCAAGTTTGA 481 TATGTTGTTT GTTATACATT ATTAAATTAT CAATATCACG ATATTTTGAA GTCAATGAAA Predicted gene structure (within gDNA segment 45560 to 42272): Exon 1 43329 42882 ( 448 n); cDNA 92 540 ( 449 n); score: 0.888 PPA cDNA 17 1 MATCH C08HBa0197A05.1- SGN-E545402+ 0.888 448 0.830 C PGS_C08HBa0197A05.1-_SGN-E545402+ (43329 42882) Alignment (genomic DNA sequence = upper lines): CTGCTGAACC AATCTCTAC- GGAATGTCAT ATGCAGAGTA CAACCAGAGT CTAAGATCCA 43271 |||||||||| ||||| | | |||||| || || ||| || |||| ||||| |||||| || CTGCTGAACC AATCTTTTCA TGAATGTAAT ATATAGAATA CAACAAGAGT CTAAGACTCA 151 TTTGTTGTCA TAGAATCCAT TATTGCATGA TGTTGTTAGT ACATAATCAT CATCATTATC 43211 ||| |||||| |||| |||| |||||||||| |||||||||| | |||||||| |||||||||| TTTATTGTCA TAGACTCCAC TATTGCATGA TGTTGTTAGT ATATAATCAT CATCATTATC 211 ATGTACTTTC TCAACAATGG ATGCACTCAC CTTTTCTTTG GACTTCGACA TAGGGCAATC 43151 |||||||| | |||||||||| ||||| | | |||||||||| |||||||||| |||| ||| ATGTACTTAC TCAACAATGG ATGCAGTTGC CTTTTCTTTG GACTTCGACA TAGGAATATC 271 TCGGTTAAAG TGCCCCTTCT TGTGACAGCC CCAACACTCC GCATTCTTTT TGTTCACACG 43091 ||| | |||| ||| | |||| | |||||||| |||||||||| |||||||| |||||||||| TCGTTCAAAG TGCACATTCT TTTGACAGCC CCAACACTCC CTATTCTTTT TGTTCACACG 331 AGACTTTGAT CTGTACTTCG ATTTTCTCCT TCCCTTTTGG CTAGTACGAC CTCTTACAAA 43031 |||||||||| ||||||||| ||| ||||| |||| |||| |||||||||| |||||||||| AGACTTTGAT CTGTACTTCA GTTTGCTCCT CCCCTGTTGG CTAGTACGAC CTCTTACAAA 391 GAGTCCACTA GCTTCGTCAC TTTTGTCTCC -TTCAAAATG CATCCGCACA TCACAAGAGT 42972 |||||||||| |||||||||| |||||||||| ||||||||| ||| | ||| |||||||||| GAGTCCACTA GCTTCGTCAC TTTTGTCTCC TTTCAAAATG CAT-CAAACA TCACAAGAGT 450 TTAGTGCTTG CCGCACTTGC TCAAGTTTAA TAGGTTGTTT GCTATACATC ATTGAATTCT 42912 | ||||||| || ||||||| |||||||| | || ||||||| | ||||||| ||| |||| | TAAGTGCTTA CCTCACTTGC TCAAGTTTGA TATGTTGTTT GTTATACATT ATTAAATTAT 510 CAATATCACG ATATTTTGAA GTCAATGAAA 42882 |||||||||| |||||||||| |||||||||| CAATATCACG ATATTTTGAA GTCAATGAAA 540 hqPGS_C08HBa0197A05.1-_SGN-E545402+ (43329 42882) ******************************************************************************** EST sequence 72 +strand 850 n (File: SGN-E542170+) 1 ACGGGCCCCC CTCGAGTTTT TTTTTTTTTT TTTTTATGTA CAAATAAGTT ATATTCAGCT 61 TTTTGAATAT ATGATAATTA ATGTATATGT AAGTCGCAAG CTATATTGTA TAGTTATAAC 121 TTTTGACAAT TTTTTTTTAT GTAAATAAAA TGTGACTATG TTTATTGTAA ACTAATTACT 181 TTATCATACA TGTATATTCG AAATTGACCC AATTTCCCCC CTGTTTTGGC TGTCTGATAT 241 AGGCATGTGC CAGAACCACA TGGACAATAT GAAATCTTAG GGAGTAACCG GGGCCTCGGG 301 TGGTCAGACT ACCACTGATA GAATCAACAA AGTAACTAGC AGAGTAACCG GGGCCTCGTG 361 TGGTCAGAGT ACCACTGAAA GAATCAACAA CCGCCACTCT CCCTGGAAAA TAGTCAAATC 421 CGAATTAGAA TTAGAAATTT ACGGTGAGTA TTGAAAATCA AATTTTAGCA TCACAACAGC 481 ACAACAGAAA AATTAAAAGT TAGAACTGGA AAAAAGTTGT ATGTATATGT GTTGCTGAAG 541 CCGAATATAT AGAGAGTGAT GGAATCACAA CTGCTATATC TAAATGTAGC TAATAAATAG 601 TAAATGAGAC AACAACAAAA AGAACGCCAG AAATTAATGA GGTTCGACAA ACTTTTGTTT 661 TCTTTTGCCT AGTCCTCGGA CACAACCAAC CAATATTTAT TTCACTCCAA AAGAGTACAA 721 GTGAAATACT ACAAGAGAGA AAGAAAAACA AATGCCTTGG TAGATGAGAA GACNAGTTAG 781 AGGTGTTTTA CAAATGAATT AGGAGCTACC TATTTATAGG AGTGAATTCT TCCTATTGAT 841 GTCATCCATG Predicted gene structure (within gDNA segment 54319 to 46071): Exon 1 52367 52341 ( 27 n); cDNA 482 506 ( 25 n); score: 0.778 Intron 1 52340 50569 (1772 n); Pd: 0.223 (s: 0), Pa: 0.910 (s: 0) Exon 2 50568 50538 ( 31 n); cDNA 507 534 ( 28 n); score: 0.548 Intron 2 50537 50133 ( 405 n); Pd: 0.990 (s: 0), Pa: 0.999 (s: 0) Exon 3 50132 50112 ( 21 n); cDNA 535 555 ( 21 n); score: 0.667 Intron 3 50111 49822 ( 290 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 4 49821 49813 ( 9 n); cDNA 556 564 ( 9 n); score: 0.667 Intron 4 49812 49510 ( 303 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.56) Exon 5 49509 49406 ( 104 n); cDNA 565 663 ( 99 n); score: 0.577 Intron 5 49405 48584 ( 822 n); Pd: 0.900 (s: 0.58), Pa: 0.208 (s: 0) Exon 6 48583 48569 ( 15 n); cDNA 664 678 ( 15 n); score: 0.600 Intron 6 48568 46850 (1719 n); Pd: 0.689 (s: 0), Pa: 0.000 (s: 0.73) Exon 7 46849 46681 ( 169 n); cDNA 679 850 ( 172 n); score: 0.775 PPA cDNA 35 16 MATCH C08HBa0197A05.1- SGN-E542170+ 0.700 376 0.442 C PGS_C08HBa0197A05.1-_SGN-E542170+ (52367 52341,50568 50538,50132 50112,49821 49813,49509 49406,48583 48569,46849 46681) Alignment (genomic DNA sequence = upper lines): CAACACTAAA ATTAAAATTA AGCAACGGTA TTAAGAAGTC AACACATTCA AAGTGACGCA 52308 ||||| ||| ||||||| | || ||| CAACAGAAAA ATTAAAAGTT AG-AAC-... .......... .......... .......... 506 AGATGTCTAA TTGATCTTTG GTTTAAGTTA CCAGCTAAAA AAAACTAGAC TTCCCACTTT 52248 .......... .......... .......... .......... .......... .......... 506 ACTCGTTTAA ATTACTCTCT CTCCGTTCAA TAGTTATTTA TTTTAAAAGC AATTATTCAA 52188 .......... .......... .......... .......... .......... .......... 506 TAATACGTGT CAAATTTAGA AAATCAAGAG ATTATTTATT TTTTATAGCT ATTTTATCCT 52128 .......... .......... .......... .......... .......... .......... 506 TGCTATTAAA AGTATTATTT ATCATCTAAC ACATTTCTCA ATGCATTAAA TTTAATAAAA 52068 .......... .......... .......... .......... .......... .......... 506 TTAAAATATA ATATAATAAT ATTACACTTA TATATATTAT TTCTTAAGGT TATATACATG 52008 .......... .......... .......... .......... .......... .......... 506 TCAAGTAAAT AGTGAACAAC TATTGTTGAA AAGAATGAAT ACTCTCTTCC TCATTGTGAT 51948 .......... .......... .......... .......... .......... .......... 506 TTCTTAAATT AGTTATCTTA GCTTGTTTAT TAAGTAGTAT TTTAAAAGTT TAAGATAAAT 51888 .......... .......... .......... .......... .......... .......... 506 TTCATTATCT TTTTCTATTT TATCTTTAAT AGTAATTGTG CAGAAAAATT ACATACCCTT 51828 .......... .......... .......... .......... .......... .......... 506 TAATTATAGG GCGATAACAC ACAAATAAAG TGAATACTTA ATGAAGAAAT ATTATATCTT 51768 .......... .......... .......... .......... .......... .......... 506 AAGATATAAA CATGAATAAA ATAGACAAAA TTAATGTTTT GGGGTGTGTA GAAAATGAAA 51708 .......... .......... .......... .......... .......... .......... 506 TACGATAAAT AATTTGAGAT GGCCAGGGAT TATAATTACC GAGGTTCAAC TTAACACACT 51648 .......... .......... .......... .......... .......... .......... 506 TAACATCCTT AGGTTTCTTC TTAGAAATTA AGATTCATCA TAAACTATTT GCTGAGGTGT 51588 .......... .......... .......... .......... .......... .......... 506 TAAAGCTGAA GTATTACCTT TATTAAATAA TAATCAAAGT GTGCTTATGT TAATTAATCC 51528 .......... .......... .......... .......... .......... .......... 506 TACTCAGATG CCCCTTAAAC TGAATCTTGG GGTAATCTAA AATAATACAT CATAATTAAA 51468 .......... .......... .......... .......... .......... .......... 506 AAAAGTGAAT TGTTGACCCT GAATCATTTT TTTTTTCTAA TCCTTATCAG CCACAATTAT 51408 .......... .......... .......... .......... .......... .......... 506 TATTCAGAAT ATTCATTAAT CTCATTTTTT CAACTCTTTC CAATAGTATA ACAATATTTC 51348 .......... .......... .......... .......... .......... .......... 506 TTTTATATAA AGGATTCTCT TTAAGCATCA AAAATAAAGA AAAATAATTA GTTTACAATA 51288 .......... .......... .......... .......... .......... .......... 506 TGGGAATCTG CATATCCTCT GAATCTTTTG AGATTCAACC TGTTGGTTTT GGTAATGAAA 51228 .......... .......... .......... .......... .......... .......... 506 ATGTTGTTCA TTATGATGAT AACAACATTA ATGAGAACCA ATGTGTAATT GGTTCTGTTT 51168 .......... .......... .......... .......... .......... .......... 506 TTTCTCAACA AGGAAATAAA GGAATCAATC AAGATTCTGC TATTCTCTAT CAGGTTTGTC 51108 .......... .......... .......... .......... .......... .......... 506 ATTTTGCAAC ATGTTTATTT AGTTTTTCTG CGCAAACATG ATCTTAACTT GCTTTCAGCC 51048 .......... .......... .......... .......... .......... .......... 506 AACGGCTGTG CCCTCCAACT TTGAGTCTGT ACAAATAAAA ACTTAAACTT ATATAAAAAT 50988 .......... .......... .......... .......... .......... .......... 506 TGAACAAGTA GAAACACGTG TCCTACATGA CATAATACAT GGAATATCAG AAGTTAAAGG 50928 .......... .......... .......... .......... .......... .......... 506 TCATGGTTGT CAGCTGATGT CAAGTTAAGT ATTGTGTTTA TGTATTATAC TCTTTTAATT 50868 .......... .......... .......... .......... .......... .......... 506 ACATGGGGTG TATAAAGATG GAAACTTTCC TTTTTATGGC AGCGCTATGG TGTAGAAAAT 50808 .......... .......... .......... .......... .......... .......... 506 GGAGTTTTTG GCGGAGTTTT TGATGGACAT GGAGAGAATG GACACATAGT AAGCAAGTTT 50748 .......... .......... .......... .......... .......... .......... 506 GTTATGACTA AGTTGCCATC TTTGCTGCTG AAACTTACAT TTTCTCTGCC AAAAATCTTT 50688 .......... .......... .......... .......... .......... .......... 506 TCTGTGAAAC AAAATGTGAT GAGAAGGAAT TTTAACAAGT GGAAAAAGGT TTGTTGGAGT 50628 .......... .......... .......... .......... .......... .......... 506 TCCTTTATGG TGATGGATAA AGATATTAAA AGTCTTGAAA ATTTGGACTG TTCTTTCAGT 50568 | .......... .......... .......... .......... .......... .........T 507 GGAACAACTG CTGTGGTTGC TATAAGACAG GTAACGAGAA AAATCTTTCA TTTGACCTGA 50508 |||| || | ||| | ||| | | GGAA-AAAAG TTGTATGTA- TATGTG-TTG .......... .......... .......... 534 TTATCGTGAA TATTGCTAAA AGTTTTGGAG AATCTAATAT GGAAATATTA TAGGATGATG 50448 .......... .......... .......... .......... .......... .......... 534 ATCTAGTTAT CGCCAACCTA GGAGATTCTC GAGCTGTACT AGGAAGAAAG ACAGAGGAGG 50388 .......... .......... .......... .......... .......... .......... 534 GAGTAATTGA GGCTGTTCAG TTAACTACGG ATTTGAAGCC TAGTCTGACT TGTAAGACTC 50328 .......... .......... .......... .......... .......... .......... 534 TTCTTTTCAT AATATTGACA TGACACACTT GGCATAATTC AATTTCAAAT TGTTCTTAGT 50268 .......... .......... .......... .......... .......... .......... 534 AATGGTCTAC CGGAAACAGT TTGTGAGGTA GAGGTAAGGT CTGCGTACAT TAGACTCCAC 50208 .......... .......... .......... .......... .......... .......... 534 TATGTGGAAC TACACTGGAT ATGCTGTTTT TGTTTATTAG TGACTAAATG ATCATACACT 50148 .......... .......... .......... .......... .......... .......... 534 GTTTGATGCA TACAGCTGAA GTAGAAAGAA TAAGGAGGTG TGGTGGCAGA GTTTTTGCAC 50088 ||||| | ||| | || || .......... .....CTGAA GCCGAATATA TAGAGA.... .......... .......... 555 GGAAAGAAGA GCCACATATC CAGAGAGTGT ATTTACCCAA TGAAGATGTT CCTGGTTTGG 50028 .......... .......... .......... .......... .......... .......... 555 CCATGACAAG ATCATATGGG GATTTAATGC TAAAATATTT CGGCATAATC TCCGAGCCTG 49968 .......... .......... .......... .......... .......... .......... 555 ATGTCTCTTA TCACCACATT ACTCCGAATG ACCAGTTTGT TGTTCTAGCA ACTGATGGGG 49908 .......... .......... .......... .......... .......... .......... 555 TAAGCCTATT TTCAACTATG TACTAGTATA TTTTGTTCTG TTTCTACAAG ACTTGACATG 49848 .......... .......... .......... .......... .......... .......... 555 TTTATTTTCA TTTTATATAA AAATAGGTGT GGGATGTGCT GAGCAATGAT CAAGTCGTTT 49788 ||| ||| .......... .......... ......GTGA TGGAA..... .......... .......... 564 CCATAGTGTG TGCAACAAAT AATGCAGCAG CAGCGGCAGA GACAGTAGTA CAAGCTTCGT 49728 .......... .......... .......... .......... .......... .......... 564 TAGATGCATG GAAACAGAGG TTTCCTAACA GCAAGAGAGA TGACAGCACT GTCATTTGCC 49668 .......... .......... .......... .......... .......... .......... 564 TCTACTTGCA ACAAGGTGCT TCTCTGAAGA ATGGTACTTG AAGCCAAAGC TTTTAGGTAC 49608 .......... .......... .......... .......... .......... .......... 564 TGATGTTACT ATTTGTATTA GTATATGGAT ATTCGCATTT TGTAGATTAT TGAGTTCTGA 49548 .......... .......... .......... .......... .......... .......... 564 GTAGAATTTT TGGAGACAAA CGTATGAAGG CTACAAACTC ATGAGATGAA TTTCTAAGTG 49488 || | | | | ||||| || .......... .......... .......... ........TC ACAACTGCTA TATCTAAATG 586 TTTTTTTCTA TATAAATAAA GCATACTACT ACACAAACAT TTTGTGTAAA TATAATGCAT 49428 | | || || | |||| | || || ||| ||| | | ||| | ||||| | -TAGCTAATA AAT-AGTAAA TGAGACAACA ACAAAAAGAA CGCCAG-AAA T-TAATG-AG 641 TTTGTACACT CATTTGTTCA CCATATCATT ATATGGGTCA AAATTTGGTT TACTGAATAT 49368 || ||| | |||||| | GTTCGACAAA CTTTTGTTTT CT........ .......... .......... .......... 663 TTATTAAGTT AGTTGAAGGT TTAATGTTGT TGTTACGAGG TTGCAAAAGT TGTCCTACTG 49308 .......... .......... .......... .......... .......... .......... 663 AATTAGTTGA ACAAAATAAC AAGGAAGAGA ATGGATGCAA GAATTTCACA AGTGGAATAT 49248 .......... .......... .......... .......... .......... .......... 663 AACTTGAAAT CCCTTCATAT GAAACTGATA CAAAAATCTC AAGTAACGAG TGAGATTCTC 49188 .......... .......... .......... .......... .......... .......... 663 CACACGAATG AACGACCTAT CAAGTTCAAG CAACCCTGAT TTAAGCTGAT CGTCAATTGC 49128 .......... .......... .......... .......... .......... .......... 663 AACTAGCATC AACATTTTAT TCATCTTTCG GACCACCTCA TTCCACCATA TCATATGTTG 49068 .......... .......... .......... .......... .......... .......... 663 AAACTCTGGG GTACTAGAGA AAAACAATAG ATATAATCAC TTACTGTTTA TCAAAAAAAG 49008 .......... .......... .......... .......... .......... .......... 663 GTATAGTTGA ATTTCTATGT GAGCTTTAAA GCACAAGTGG ATTGAATTGA TCAAGATGAA 48948 .......... .......... .......... .......... .......... .......... 663 AAAAGTACAT AAATAATAAA TGAGATAACA TAAAATGAAT AAGCAAATGT AGTATGCGTT 48888 .......... .......... .......... .......... .......... .......... 663 GGCTTGAATC CAAAGATACA CTTCTTAGGA AAAGCTTGAA GATTGCTCAA AGCTAATGAA 48828 .......... .......... .......... .......... .......... .......... 663 CAAGTAACAA AATTGTTAGA GAGAAATTGA AGTATTTTGT AAAAGAATCC GATGATTTAC 48768 .......... .......... .......... .......... .......... .......... 663 AAGGTAGTGA TTCTATAGCT TTTATAGGGG TGATTACTCA GGAGCTAATT CCCAAGAAGT 48708 .......... .......... .......... .......... .......... .......... 663 AATCTTAACT CATGATAAAT AAGTAATTGA CATTTTAGGA TGGGAAGAGT AACGTTTTCA 48648 .......... .......... .......... .......... .......... .......... 663 TAACGCCTAG TGTTGGTCAC TGGATTTTTC TCCTTTCATA ATTGGTTCTT GTGAGGCAAT 48588 .......... .......... .......... .......... .......... .......... 663 CCAGGATGTG TAGTCCACTG TACATATTAC AAATCCTGAT CGCCTCACAA TGAACCAATT 48528 || |||||| | ....TTTGCC TAGTCCTCG. .......... .......... .......... .......... 678 ATGTGTACAG ATACACATAC ATAAAAAAAA AGTTGATCTT GTTAGATCGA GAAAGATTTT 48468 .......... .......... .......... .......... .......... .......... 678 GACAACTGAC AAATAGAGGA ACATACTAAA GGAACTTGGA GCTGACATGT TCCTTTCAGA 48408 .......... .......... .......... .......... .......... .......... 678 CCGAACCCGG ATGGGATAAG GAGAATGTCA ACAACGCAAA TTAAGAGTTA TAAAACAGTG 48348 .......... .......... .......... .......... .......... .......... 678 GAAGGGTTGC TTTATCGACA AGAAACCAGT GCAAAGAGGT TTCCTTTCAT AAAGAAATCC 48288 .......... .......... .......... .......... .......... .......... 678 TAAGCGAAGT AGGAAGTGTA AATGAAGTAG GATGCATAAG CAGAGTGAGA AGTATAACAA 48228 .......... .......... .......... .......... .......... .......... 678 CGTAAATAAC TTTCAAATCC GGAACAGATT AGGTAGCATG ATCAGATATG TAAATCGAGT 48168 .......... .......... .......... .......... .......... .......... 678 TCATGTCGAA ATAGGCTTTG AAAAGTTCAA AGTCTATGAA TACGACAATA TTTTCTTTTA 48108 .......... .......... .......... .......... .......... .......... 678 AGAAAATTGC GCACTCAAAC AGAGAATTAC AAGAAGAATA CTATAAAATA GAGGTAGTTC 48048 .......... .......... .......... .......... .......... .......... 678 ATATTTGAGT GATTTCCGAT TACGAAGTGC AGCCAACACA AGGAAACAGG AAACAAGAAT 47988 .......... .......... .......... .......... .......... .......... 678 CGAAGAATTG ATTCATAGGC TTAAGTTTTA TAGTTCTTAA GTAAAGTTGC TTGTATTGAG 47928 .......... .......... .......... .......... .......... .......... 678 TTTTTATCGA GTTTTATCCT TAATTCTTTC TAGATCCAGG GAAGTATAAA CTGGAGTAGG 47868 .......... .......... .......... .......... .......... .......... 678 AATAGAGTCT TCAAGTTGGG GCAACTTGAA AACTTGGGAA CATAAACCTT CGGAAGTTTG 47808 .......... .......... .......... .......... .......... .......... 678 TGTTAGACTT TAGGAATTAG AGTTAGTTTC TAAGATTGCA AGAGTTGTAA TCTGAATTCA 47748 .......... .......... .......... .......... .......... .......... 678 TAACTTGAAG TGGGGTCGAC GAGTTAGTTG GTTGTTGGTG TCTAAGAATT AGACTTTATA 47688 .......... .......... .......... .......... .......... .......... 678 ATTCCTTAGC TTACATATTG CTGTAATCTT TTTTTGAGAT TCAGAGTTTA ATGAAGTGGA 47628 .......... .......... .......... .......... .......... .......... 678 GTTAAATCTT ATAGAGGTGT AGGTCGTGAT TTTTTTACCT TTACGAGCTG AGGTTTTCCG 47568 .......... .......... .......... .......... .......... .......... 678 CGATAAAATA TTATGTCATT ACTTTATTTG CTTTACATAA CGTAGCTACT ATAATCTACA 47508 .......... .......... .......... .......... .......... .......... 678 ACGGAACAAA TAGAATATAT CTTTTCCTTA GGCAAATCTG AGGGTCAATA TTCTAACAGT 47448 .......... .......... .......... .......... .......... .......... 678 TGGTGTCTAT GAATTCTGCA ACTCTGCTTG GACACAGTGA AGTTCAATAC ATCAACATAC 47388 .......... .......... .......... .......... .......... .......... 678 CACCACTATT CAATGGACAT TACTACGCAT GGTGGAATGA GAGAATGGAG GATTATTAAC 47328 .......... .......... .......... .......... .......... .......... 678 AAACCAAGGA CTATGAATTA TGAATGAGAG TTACTGATGA TCCTCTTATT CCTGTGATGC 47268 .......... .......... .......... .......... .......... .......... 678 AGGGTGATGA AGGAAAAGTC ATTCCAAAGT CCAATGCTCA ATATGGAGAA GTTGATTATA 47208 .......... .......... .......... .......... .......... .......... 678 AAATGCTCGA AAAGAATGCT AAAGCTAAGT GCATCCTTGT ATGTGCACTT GGACCTAATG 47148 .......... .......... .......... .......... .......... .......... 678 AATATAGTCA CATCTCTGGG TGTACTACAA CGAAACAAAT TTGGGGCATA CTGGTAAATG 47088 .......... .......... .......... .......... .......... .......... 678 CACAAGAAGG AACTCCCCAA TTAAGAAAAT TTGGAATTGC TAGACTATGC ACTAAATATG 47028 .......... .......... .......... .......... .......... .......... 678 AAGCATTTAA AATGGAGAGT GGTGAATCAC TTCAAGATAT TATAACTAGA TTCATTATTA 46968 .......... .......... .......... .......... .......... .......... 678 TTGTGAATGG AGTGGTGTCT TTAGGGAAGA TATGTTAGCG GAAACGTGAA ACTAAAGAAC 46908 .......... .......... .......... .......... .......... .......... 678 AAGGAAGAAC AACAATATTT AACGTGGTTC GGATCAAAAT GATCCTACGT CCACCAAAGA 46848 || .......... .......... .......... .......... .......... ........GA 680 -ACAACTGCA CCAATATTTA TTTCACTATA CAAAGAATAT AAGTG-AATA CTACAAGAGA 46790 ||||| | |||||||||| ||||||| | ||||| || ||||| |||| |||||||||| CACAAC-CAA CCAATATTTA TTTCACTCCA -AAAGAGTAC AAGTGAAATA CTACAAGAGA 738 G--AGAACA- C-AATGCCTT AGAAGATGAG AAGGCAAGTG AAAGGATGAT TTGAAAATGA 46734 | |||| | | |||||||| | ||||||| ||| | ||| | ||| || | || |||||| GAAAGAAAAA CAAATGCCTT GGTAGATGAG AAGACNAGTT AGAGG-TGTT TTACAAATGA 797 ATTAAGAGCT ACCTATTTAT AGGAATAAAT TCATCCTATT GATGTCATCC ATG 46681 |||| ||||| |||||||||| |||| | ||| || ||||||| |||||||||| ||| ATTAGGAGCT ACCTATTTAT AGGAGTGAAT TCTTCCTATT GATGTCATCC ATG 850 hqPGS_C08HBa0197A05.1-_SGN-E542170+ (52367 52341,50568 50538,50132 50112,49821 49813,49509 49406,48583 48569,46849 46681) ******************************************************************************** EST sequence 15 +strand 606 n (File: SGN-E392579+) 1 AAAGAAAAGA CCCACTACAA ACACTCTCAA AAAATTCCCA AAACTACCTT TTTCATAAAA 61 CTATCCTTTA GACATTGTAA AAAGATTTTC AGATTTTGGT TCTTTAAGTA TTTTTTTTTT 121 GTTTAAAGAA AGCTTGGAAG TTTTCGGGTT TCCCGAAAGG GAAACTTCAC TCTGTTCTTA 181 TAATAGACAT CGCTAAACAG GACTGCGATA GCCTAGACTG TGGGTTATAT GTTACTACAT 241 TTGCCGAGTA TATGAGTGAC CAAATCAATA TATCATATGC TGATTTTAGT CATGATTACC 301 TACGTCAAAG ATATGGAGCA TTGCTGTGGA GTTATGGAAG CGAGAAGGCT AAGTGCGGAT 361 ATGTTAGTGA CAATGATTAT CCACCAAAAT CTAGGGGCGT AGTCACACCA CAACCAGAAG 421 AAGATTTAGT TCACATAGTT AATGTTGATT AATGATCTGT TACCGTAAAT TAAGCTGTTT 481 TAGTTAACAA GTTTAAATGT TCCATTTTTC CCCATTTTTT TTTCTTAACA AGTTGACCAG 541 AACATTCATT TGTTGCTTTA TAAAAAACAT TTAAAAAATC AATCAGTTCT TTTGTAAAAA 601 AAAAAA Predicted gene structure (within gDNA segment 52040 to 58814): Exon 1 57067 57165 ( 99 n); cDNA 424 521 ( 98 n); score: 0.879 PPA cDNA 596 606 MATCH C08HBa0197A05.1+ SGN-E392579+ 0.879 99 0.163 C PGS_C08HBa0197A05.1+_SGN-E392579+ (57067 57165) Alignment (genomic DNA sequence = upper lines): ATTAATATTC AATAATTTAA TGCTGATTAA TGATCTGTTA CCGTAAATTA AGCTATTTTA 57126 ||| | ||| | | |||| || ||||||| |||||||||| |||||||||| |||| ||||| ATTTA-GTTC ACATAGTTAA TGTTGATTAA TGATCTGTTA CCGTAAATTA AGCTGTTTTA 482 GTTAACAAGT TTAAATGTAC CGTTTTCCCC CATTTTTTT 57165 |||||||||| |||||||| | | |||| ||| ||||||||| GTTAACAAGT TTAAATGTTC CATTTTTCCC CATTTTTTT 521 hqPGS_C08HBa0197A05.1+_SGN-E392579+ (57067 57165) ******************************************************************************** EST sequence 17 +strand 605 n (File: SGN-E397911+) 1 AAAGAAAAGA CCCACTACAA ACACTCTCAA AAAATTCCCA AAACTACCTT TTTCATAAAA 61 CTATCCTTTA GACATTGTAA AAAGATTTTC AGATTTTGGT TCTTTAAGTA TTTTTTTTTT 121 GTTTAAAGAA AGCTTGGAAG TTTTCGGGTT TCCCGAAAGG GAAACTTCAC TCTGTTCTTA 181 TAATAGACAT CGCTAAACAG GACTGCGATA GCCTAGACTG TGGGTTATAT GTTACTACAT 241 TTGCCGAGTA TATGAGTGAC CAAATCAATA TATCATATGC TGATTTTAGT CATGATTACC 301 TACGTCAAAG ATATGGAGCA TTGCTGTGGA GTTATGGAAG CGAGAAGGCT AAGTGCGGAT 361 ATGTTAGTGA CAATGATTAT CCACCAAAAT CTAGGGGCGT AGTCACACCA CAACCAGAAG 421 AAGATTTAGT TCACATAGTT AATGTTGATT AATGATCTGT TACCGTAAAT TAAGCTGTTT 481 TAGTTAACAA GTTTAAATGT TCCATTTTTC CCCATTTTTT TTTCTTAACA AGTTGACCAG 541 AACATTCATT TGTTGCTTTA TAAAAAACAT TTAAAAAATC AATCAGTTCT TTTGTAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 52040 to 58804): Exon 1 57067 57165 ( 99 n); cDNA 424 521 ( 98 n); score: 0.879 PPA cDNA 596 605 MATCH C08HBa0197A05.1+ SGN-E397911+ 0.879 99 0.164 C PGS_C08HBa0197A05.1+_SGN-E397911+ (57067 57165) Alignment (genomic DNA sequence = upper lines): ATTAATATTC AATAATTTAA TGCTGATTAA TGATCTGTTA CCGTAAATTA AGCTATTTTA 57126 ||| | ||| | | |||| || ||||||| |||||||||| |||||||||| |||| ||||| ATTTA-GTTC ACATAGTTAA TGTTGATTAA TGATCTGTTA CCGTAAATTA AGCTGTTTTA 482 GTTAACAAGT TTAAATGTAC CGTTTTCCCC CATTTTTTT 57165 |||||||||| |||||||| | | |||| ||| ||||||||| GTTAACAAGT TTAAATGTTC CATTTTTCCC CATTTTTTT 521 hqPGS_C08HBa0197A05.1+_SGN-E397911+ (57067 57165) ******************************************************************************** EST sequence 60 -strand 453 n (File: SGN-E392202-) 1 CGAAAGGGAA ATTTCACTCT GTTTTTATAA TAGACATCGT TAAACAGGAT TGCGATAGCC 61 TAGACTGTGG GTTATATGTT ACTACATTTG CCGAGTATAT GAGTGACCAA ATCAATATAT 121 CATATGCTGA TTTTAGTCAT GATTACCTAC GTCAAAGATA TGGAGCATTG CTGTGGAGTT 181 ATGGAAGCGA GAAGGCTAAG TGCGGATATG TTAGTGACAA TGATTATCCA CCAAAATTTA 241 GGGGCGTAGT CACACCACAA CCAGAAGAAG ATTTAGTTCA CATAGTTAAT GTTGATTAAT 301 GATCTGTTAC CGTAAATTAA GCTGTTTTAG TTAACAAGTT TAAATGTTCC ATTTTTCCCC 361 ATTTTTTTTT CTTAACAAGT TGACCAGAAC ATTCATTTGT TGCTTTATAA AAAACATTTA 421 AAAAATCAAT CAGTTGTTTT GTAAAAAAAA AAA Predicted gene structure (within gDNA segment 53560 to 58804): Exon 1 57067 57165 ( 99 n); cDNA 271 368 ( 98 n); score: 0.879 PPA cDNA 443 453 MATCH C08HBa0197A05.1+ SGN-E392202- 0.879 99 0.219 C PGS_C08HBa0197A05.1+_SGN-E392202- (57067 57165) Alignment (genomic DNA sequence = upper lines): ATTAATATTC AATAATTTAA TGCTGATTAA TGATCTGTTA CCGTAAATTA AGCTATTTTA 57126 ||| | ||| | | |||| || ||||||| |||||||||| |||||||||| |||| ||||| ATTTA-GTTC ACATAGTTAA TGTTGATTAA TGATCTGTTA CCGTAAATTA AGCTGTTTTA 329 GTTAACAAGT TTAAATGTAC CGTTTTCCCC CATTTTTTT 57165 |||||||||| |||||||| | | |||| ||| ||||||||| GTTAACAAGT TTAAATGTTC CATTTTTCCC CATTTTTTT 368 hqPGS_C08HBa0197A05.1+_SGN-E392202- (57067 57165) ******************************************************************************** EST sequence 64 -strand 207 n (File: SGN-E392578-) 1 TAGTCACACC ACAACCAGAA GAAGATTTAG TTCACATAGT TAATGTTGAT TAATGATCTG 61 TTACCGTAAA TTAAGCTGTT TTAGTTAACA AGTTTAAATG TTCCATTTTT CCCCATTTTT 121 TTTTCTTAAC AAGTTGACCA GAACATTCAT TTGTTGCTTT ATAAAAAACA TTTAAAAAAT 181 CAATCAGTTC TTTTGTAAAA AAAAAAA Predicted gene structure (within gDNA segment 56020 to 58804): Exon 1 57083 57165 ( 83 n); cDNA 40 122 ( 83 n); score: 0.940 PPA cDNA 197 207 MATCH C08HBa0197A05.1+ SGN-E392578- 0.940 83 0.401 C PGS_C08HBa0197A05.1+_SGN-E392578- (57083 57165) Alignment (genomic DNA sequence = upper lines): TTAATGCTGA TTAATGATCT GTTACCGTAA ATTAAGCTAT TTTAGTTAAC AAGTTTAAAT 57142 |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTAATGTTGA TTAATGATCT GTTACCGTAA ATTAAGCTGT TTTAGTTAAC AAGTTTAAAT 99 GTACCGTTTT CCCCCATTTT TTT 57165 || || |||| ||||||||| ||| GTTCCATTTT TCCCCATTTT TTT 122 hqPGS_C08HBa0197A05.1+_SGN-E392578- (57083 57165) ******************************************************************************** EST sequence 66 -strand 230 n (File: SGN-E392587-) 1 GTATCCACCA AAATCTAGGG GCGTAGTCAC ACCACAACCA GAAGAAGATT TAGTTCACAT 61 AGTTAATGTT GATTAATGAT CTGTTACCGT AAATTAAGCT GTTTTAGTTA ACAAGTTTAA 121 ATGTTCCATT TTTCCCCATT TTTTTTTCTT AACAAGTTGA CCAGAACATT CATTTGTTGC 181 TTTATAAAAA ACATTTAAAA AATCAATCAG TTCTTTTGTA AAAAAAAAAA Predicted gene structure (within gDNA segment 55790 to 58804): Exon 1 57083 57165 ( 83 n); cDNA 63 145 ( 83 n); score: 0.940 PPA cDNA 220 230 MATCH C08HBa0197A05.1+ SGN-E392587- 0.940 83 0.361 C PGS_C08HBa0197A05.1+_SGN-E392587- (57083 57165) Alignment (genomic DNA sequence = upper lines): TTAATGCTGA TTAATGATCT GTTACCGTAA ATTAAGCTAT TTTAGTTAAC AAGTTTAAAT 57142 |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTAATGTTGA TTAATGATCT GTTACCGTAA ATTAAGCTGT TTTAGTTAAC AAGTTTAAAT 122 GTACCGTTTT CCCCCATTTT TTT 57165 || || |||| ||||||||| ||| GTTCCATTTT TCCCCATTTT TTT 145 hqPGS_C08HBa0197A05.1+_SGN-E392587- (57083 57165) ******************************************************************************** EST sequence 62 -strand 609 n (File: SGN-E392422-) 1 AAAGAAAAGA CCCACTCAAG ACATTCTTCA AAAAATTCCC AAAACTACCT TTTTTATAAA 61 ACTATCCTTT AGACATTGTA AAAAGGATTT TCAGATTTTG GGTTCTTTAA GTATTTTTTT 121 TTTTGTTTAA AGAAAGCTTG GAAGTTTTCG GGTTTCCCGA AAGGGAAACT TCACTGTGTT 181 TTTATAATAG ACATCGGTAA ACAGGAGTGC GATAGCCTAG ACTGTGGGTT ATATGTTAGT 241 ACATTTGCCG AGTATATGAG TGACCAAATC AATATATCAT ATGTTGATTT TAGTCATGAT 301 TACCTACGTC AAAGATATGG AGCATTGGTG TGGAGTTATG GAAGGGAGAA GGCTAAGTGC 361 GGATATGTTA GGGACAATGA TTATCCACCA AAATCTAGGG GGGTAGTCAC ACCACAACCA 421 GAAGAAGATT TAGTTCACAT AGTTAATGTT GATTAATGAT CTGTTACCGT AAATTAAGCT 481 GTTTTAGTTA ACAAGTTTAA ATGTTCCATT TTTCCCCATT TTTTTTTCTT AACAAGTTGA 541 CCAGAACATT CATTTGTTGC TTTATAAAAA ACATTTAAAA AATCAATCAG TTCGTTGAAA 601 AAAAAAAAA Predicted gene structure (within gDNA segment 51990 to 58794): Exon 1 54620 54639 ( 20 n); cDNA 367 385 ( 19 n); score: 0.800 Intron 1 54640 56393 (1754 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 2 56394 56455 ( 62 n); cDNA 386 444 ( 59 n); score: 0.613 Intron 2 56456 57084 ( 629 n); Pd: 0.273 (s: 0.56), Pa: 0.000 (s: 0.96) Exon 3 57085 57165 ( 81 n); cDNA 445 525 ( 81 n); score: 0.938 PPA cDNA 598 609 MATCH C08HBa0197A05.1+ SGN-E392422- 0.797 163 0.268 C PGS_C08HBa0197A05.1+_SGN-E392422- (54620 54639,56394 56455,57085 57165) Alignment (genomic DNA sequence = upper lines): GTTACGGTCA ATGCATCATC ATTTTCATAA TAATGGAGAT AAAAATTAAT AAATGTATAA 54679 |||| || || ||| || ||| GTTAGGGACA ATG-ATTATC .......... .......... .......... .......... 385 GAAAAAATGG ATAATATGCA ATATAATATC TCAATTAGAA ACAGAAAATT AGGATTAATA 54739 .......... .......... .......... .......... .......... .......... 385 TCAGCATTAT AGTGTTGTTG GCATCATGCA TATGTGACTT AAACAAATAA TTAAGGCTGA 54799 .......... .......... .......... .......... .......... .......... 385 TTAGAGGAGA ATGATTGTGC TACTAAATTA GGTTGAAGGT TAACATAAGA AATATAAAAG 54859 .......... .......... .......... .......... .......... .......... 385 ATACAAGTAC TAACTATGAT GAATCACTTG AATATTTGGA TAGAATTCAT GTTAGTTAAA 54919 .......... .......... .......... .......... .......... .......... 385 TTGTCGTGAA AATTCTTTTT ATATAGATGA CAGTGAGATT TAATTTCATG ACATTCATTT 54979 .......... .......... .......... .......... .......... .......... 385 ACTCTAATAT CATGTTGAAA TGTTAGACTA TCATCTAAAA ATTTAATCAA TAGGAGAAAG 55039 .......... .......... .......... .......... .......... .......... 385 CATATATATA ATTATATTTT CAATAGGGTA ATGGTGTGTG AAAATCTAAT TAAACATATG 55099 .......... .......... .......... .......... .......... .......... 385 ATATGCAGGA TCATTAAATA GAATACGAAC ATAATTGAAT CAATTCTTTA TTATCTTAAT 55159 .......... .......... .......... .......... .......... .......... 385 TTGTCAATTC TCAAATGAAT GAAACATTTT TTTTTCTCTT TTTAATGATT CAATGACATT 55219 .......... .......... .......... .......... .......... .......... 385 TTTAGCCTTA AAATCTTAAA ATCTTTGGCT CAAATTAAGT TTAGATTACA AAAACTGGAC 55279 .......... .......... .......... .......... .......... .......... 385 TACTTATTTA CTTTAATTTA TTTTACTCAT TAAATGTACA GAATTAAAAT TTCAAAAATG 55339 .......... .......... .......... .......... .......... .......... 385 GACTTGAAGT AGTAACTCAA ATAAAAACAT GCAAAAACTC GATTTATAAA GATTTTGAAT 55399 .......... .......... .......... .......... .......... .......... 385 TCATTTATGA CAAATTATAC GATGTTGTTT TCACCTTTTC AATTAAACTC GATATAATTT 55459 .......... .......... .......... .......... .......... .......... 385 TTTAAATATT GAATTTTCCA TTAGAAATGT TGCCTCATTT TGCTTGTGTT GACTTTTGGA 55519 .......... .......... .......... .......... .......... .......... 385 ATCTATTGCT CTTAAATTTT AATTTTTCAT TCTTGCACGT AAGGATTTTT ATGGGAATAA 55579 .......... .......... .......... .......... .......... .......... 385 AAAAATATTC CATAAGCTAT ATAATTGGCG GTACCAAAGC AAATATATGT TGATAGAGAT 55639 .......... .......... .......... .......... .......... .......... 385 AACTGGTTAT CTCGTTCAAT ATTAATTTGA CACACTATAA ATAAAATGAT ACTTTTGTTC 55699 .......... .......... .......... .......... .......... .......... 385 TATAATTTTT TATTAAAATT AACTTAATAT TTTAAAATAA TACATTGAAA ATGACTATAA 55759 .......... .......... .......... .......... .......... .......... 385 CTAATGATAA GAATAAAATA AAAACTAAGT GATAAATTAA TAAGGAAAAA CAACTTAAAT 55819 .......... .......... .......... .......... .......... .......... 385 ACACAATTAT AAGTTTTATA TTCTCTAATT TTTCCTTCTT TTTTTAAATA TTACATAATT 55879 .......... .......... .......... .......... .......... .......... 385 TCTTTTATTT TAATTTTAGT AGAAGTGTAT AGATACATAA CATTCTCTCT CCTATAATAC 55939 .......... .......... .......... .......... .......... .......... 385 ACAATCCCCC AATATAATGC CTATTTTTTC TCCACTAAAA CACTCAATCT TCTAAATCAA 55999 .......... .......... .......... .......... .......... .......... 385 TTTTTGAATT TTGAATTATT AATTTTAATT AATTTTAAAT AAAACACCCA ATTTTGAAAT 56059 .......... .......... .......... .......... .......... .......... 385 TTTAAATTTC AAAAAACTGC ACAATTTCTC TCCCGTTCTT ATTGTTCTTC TTACTCCATC 56119 .......... .......... .......... .......... .......... .......... 385 ACGTCTTCAA TTCTTCTTAC TCCATCATCG TCTTTCTTCT TCTTAACTCA GCATCGGTTA 56179 .......... .......... .......... .......... .......... .......... 385 TTGATTTCTT CTTTTTCTTA TTATTCCATC ATCAGTTCTT CTTTTCTTCC TTTTTTTGTT 56239 .......... .......... .......... .......... .......... .......... 385 TTGGTTAATT GTTCTATTAC ATCATAGTAA TGGATCCGTT AATTAATAGA AGAATATATG 56299 .......... .......... .......... .......... .......... .......... 385 ATTCCGACGA TGAAAATTGG AAAGAAAATA GAAAAAAAGT CTTTGCATGA TCCTATGAAT 56359 .......... .......... .......... .......... .......... .......... 385 CTTCAGAAGG ATTCAAACAA AGACTCCGGC AAAACATCAA AATCAAAGGT TGTCAAAATA 56419 || ||| |||| | || || | | .......... .......... .......... ....CACCAA AATCTAGGGG GGTAGTCACA 411 CAACAAAAAA TGAAAAAGGA AGCAGCAAAC ATTGTTGTCA GGCCTACATT GTTTCGGGTT 56479 | |||| | ||| || || || || || ||| CCACAACCA- -GAAGAA-GA TTTAGTTCAC ATAGTT.... .......... .......... 444 TGTATTTTTA TACTTATTTT AAAATTGTTG TTGAAATTAG TAAAAATTTT AAGGAATCCA 56539 .......... .......... .......... .......... .......... .......... 444 ATATGCATCA AAAAATTATG AAAATTATTA TCATGTATCA GACAATAGGT TTAACACATA 56599 .......... .......... .......... .......... .......... .......... 444 AGTACTAAGT GGATTATAAT GTTTAGTCTA TGATTTGATA CATGAATTAG ATGTGTATCA 56659 .......... .......... .......... .......... .......... .......... 444 TATGATTTTC TATGTATCAA CGGTTTTTGA AATTTTTTAT CATGTATCAG TGATTAATTT 56719 .......... .......... .......... .......... .......... .......... 444 CAATAACTGC GCCATCAAGT GTGCTTGCTG ATACATTTTG AATCAGTGTG TATAGTGTTT 56779 .......... .......... .......... .......... .......... .......... 444 TAGACGATGC ATTGATACAT GAAGTGTTTG CTGATACATT TTGAATCAGT GTGCTTGCTG 56839 .......... .......... .......... .......... .......... .......... 444 ATACATTTTG AATCCATCAA GTTTGTATAG TGTTTTAGAT GATGCATTGA TACATTTTGA 56899 .......... .......... .......... .......... .......... .......... 444 ATTCATCAAG TGTGCTTGCC GATACATTTT GAATCAGTGT GTATAATGTT TTAGACGATG 56959 .......... .......... .......... .......... .......... .......... 444 CATTGATACA TGAATTTGTT GTGTATCATA ATATTTTTTA TGTATCATGC GGTTTTGAAA 57019 .......... .......... .......... .......... .......... .......... 444 ATTGTATTCA AAATAGATGA TATAATCTTT GATTTTCAAA ATTTGAAATT AATATTCAAT 57079 .......... .......... .......... .......... .......... .......... 444 AATTTAATGC TGATTAATGA TCTGTTACCG TAAATTAAGC TATTTTAGTT AACAAGTTTA 57139 |||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| .....AATGT TGATTAATGA TCTGTTACCG TAAATTAAGC TGTTTTAGTT AACAAGTTTA 499 AATGTACCGT TTTCCCCCAT TTTTTT 57165 ||||| || | ||| |||||| |||||| AATGTTCCAT TTTTCCCCAT TTTTTT 525 hqPGS_C08HBa0197A05.1+_SGN-E392422- (57085 57165) ******************************************************************************** EST sequence 24 -strand 539 n (File: SGN-E355020-) 1 CCCGCGGCAA GGTTTTACAC ATAGGGCCAG CTGCTTTCTT TATCTCGCTT GCCCTTAGTC 61 CGTCTAGCGC CTTTCGGTTG GGGTCCGCCC TGGGGGTTAG GTTAGACCGC TTGGGTTTTT 121 TTTCGTCTAT GGAAGGCAGT CAAGGTGTCA GCCATTCTTC CCCCATTAGA CTGGTCAATC 181 CTTGGCTCTT TTTCCTTCTC TCTTCCAGTT CTCCCCTTTT ACTTTATTTG ACAGGGGCGG 241 AGAATACCAC TCTATCAATA CCAAGAAAAA AGTAGCAATT CCGTTTCAAA TGGTTTGAGC 301 TTGGAAGCAA CCTGCTATCT ATCGATAGGC GAGAACAGAC TGCTATTGAC TGCTTCGCCT 361 ATCTATTCTA TTATGGCCGG CTTGGAGACA TCAGAGGAAG ACCACCATCT CTATCCGGAT 421 CATAGCTTCA TTCATTCGTT GAACCTTGGG GATCACCATT AGCATTGAGG TCAATCACCA 481 CACTACCTCT ATCATACATA CGACATTACA CGAAGCGAGA GTGCATGGTC AACACACAC Predicted gene structure (within gDNA segment 62849 to 56388): Exon 1 61474 61458 ( 17 n); cDNA 312 327 ( 16 n); score: 0.765 Intron 1 61457 60838 ( 620 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 60837 60825 ( 13 n); cDNA 328 340 ( 13 n); score: 0.692 Intron 2 60824 58142 (2683 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 58141 58036 ( 106 n); cDNA 341 445 ( 105 n); score: 0.972 MATCH C08HBa0197A05.1- SGN-E355020- 0.972 136 0.252 C PGS_C08HBa0197A05.1-_SGN-E355020- (61474 61458,60837 60825,58141 58036) Alignment (genomic DNA sequence = upper lines): CTGCTAATCA CTGGATAATA CATCAGATGG ATGTATACAA TGCATTTTTA CAAGGAGATT 61415 |||||| || | |||| CTGCTA-TCT ATCGATA... .......... .......... .......... .......... 327 TATATGAAGA AGTATATATG AAACCACCTG AAGGTCTTAA TAGAAAAGTT GGCAGTGATT 61355 .......... .......... .......... .......... .......... .......... 327 AAGTTTGCAG ATTGTTGAAA TCTCTTTATG GCCTTAAACA AGCTTCAAGA CAGTGGAATA 61295 .......... .......... .......... .......... .......... .......... 327 TTAAACTAAC TACTACCTTG ATTGATTCAG GATTCATTCA GAGCAATAGA GACTACTCTT 61235 .......... .......... .......... .......... .......... .......... 327 TGTTCACTAA AAGGAAGGAC AACAGATTAG TAGTGGTATT AGTGTATGTA GATGATTTAC 61175 .......... .......... .......... .......... .......... .......... 327 TAATAACAGG AAATGATTCC AATATGATTC ATGAGACTAA AGCAGCTTTG CAACATGCAT 61115 .......... .......... .......... .......... .......... .......... 327 TCAAGATTAA ATACTTAGGA GAACTAAGAT ACTTTCTTGG ATTGGAGTTT GCTAGAAGTG 61055 .......... .......... .......... .......... .......... .......... 327 ACAGTGGGAT ACTCATACAC CAGAGGAAGT ATACTTTAGA GTTACTAGCT GACATGGGAT 60995 .......... .......... .......... .......... .......... .......... 327 TATCAGGTGC TAAACCAGTA TCAACACCTA TGGAAATGAA TTTAAAACTC ACTTCCACAG 60935 .......... .......... .......... .......... .......... .......... 327 AATATGATGA TCACATGGAT TCTTCACATA ATGATACACT TCTTGAGGAT CCTGCAAGTT 60875 .......... .......... .......... .......... .......... .......... 327 ATCAAAGATT GATTGGAAGG TTATTGTATC TCACCACCAC TAGACCAGAC ATATCTTTTG 60815 | ||| ||||| .......... .......... .......... .......GGC GAGAACAGAC .......... 340 CAGTTCAATG TCTAAGTCAA TTTATGCATG CACCAAAAAT TTCACACATG AATTCAGCAC 60755 .......... .......... .......... .......... .......... .......... 340 TCAGACTGGT CAGATATTTG AAGACAGAAC CAGGTTTGGG AATTCTAATG TCATCAATTG 60695 .......... .......... .......... .......... .......... .......... 340 GGGGAGATAG TTTACAAGTA TTTTGTGATG CTGATTGGGG TTCATGCATA AACAGCAGGA 60635 .......... .......... .......... .......... .......... .......... 340 GGTCAATCAC TGGTTACTTA ATCAAATATG GAGAATCACT TATCTCATGG AGGTCTAAGA 60575 .......... .......... .......... .......... .......... .......... 340 AGCAGGTTAC AGTTTCCAGA AGTTCAGCTG AGGCTAAGTA CAGAGCCATG GCCTCAACTG 60515 .......... .......... .......... .......... .......... .......... 340 TTGCAGAGAT TGTTTGGACC GTTGGTTTGT TTAAGGAATT AGGAGTTGAT ATCTCTTTAC 60455 .......... .......... .......... .......... .......... .......... 340 CAGTGTCGAT TCATTCAGAT AGTACTTCAG CATTGCAAAT TGCAGCCAAT CCTGTGTTTC 60395 .......... .......... .......... .......... .......... .......... 340 ATGAAAGAAC AAAACACATA GATATTGATT GTCACTTCAT TAGAGAGAAA ATCAAGAATG 60335 .......... .......... .......... .......... .......... .......... 340 GAATGATTAT CACTGCCTAT CTATCATCTT CAGAACAGCC TGCAGATATG CTTACCAAGG 60275 .......... .......... .......... .......... .......... .......... 340 CACTTGGAAA AGGCCATCAT AAGTATTTAA TGTCCAAGCT AGGAATGAAG AACATCTTCA 60215 .......... .......... .......... .......... .......... .......... 340 TAGCTCCTAG CTTGAAGGGG GGGTGTAAAA GAACTAACTA AATGTGTACA AGTTCCCTAG 60155 .......... .......... .......... .......... .......... .......... 340 CATTACTAAT TGTAATTAAA CATTGTTAAG AGTGTAAATA TAGTTAGTTA GTTAGTTAGT 60095 .......... .......... .......... .......... .......... .......... 340 TAGTTTGTTA GCAAAGGTCA GTAAATTAGT TGGGGTTTTG AGTCATTATA TATGCTTGTA 60035 .......... .......... .......... .......... .......... .......... 340 AGTAGCATTA GTACGGTTAA GTTTCAATAT CAGATTTTTC CTCCTCTTCC TCATTGCTTC 59975 .......... .......... .......... .......... .......... .......... 340 TCTGTTCTTC CTTTTACTCT TCAATGGAGT TTTCTTTCTC CAATTCAGTT TCTTAACATT 59915 .......... .......... .......... .......... .......... .......... 340 CGATTTTCGG ATAAGACTTG GATTCTGAAT TCGAAATGGG CCTAGGGATG ATCCAAATTT 59855 .......... .......... .......... .......... .......... .......... 340 TATCCATCTT TCCCCAAGTT TGGAACCCTT TATATATATT CTCTCTAGCG TTCAAACCAG 59795 .......... .......... .......... .......... .......... .......... 340 GGGTAGGAGA CTCTGGGAGA AAGATTTAGG AGTTGACTTT TTTTTTTTAG TTGGTAATTT 59735 .......... .......... .......... .......... .......... .......... 340 CTCGTTCTAA ATAGAAAAAG CAGAGAGATT TTTGTGAAAA GGAAATCTTG GAGAAGGATT 59675 .......... .......... .......... .......... .......... .......... 340 TCTTTTCGGA TTTTTTTTTT TTTTGAAAAA AAAAGATATT GAAGAAAGGT TTTCTTATTT 59615 .......... .......... .......... .......... .......... .......... 340 TGCTCGTGTT TGTGTTCGTG TGTTGGTGAA TTGGTCTCTT GCTCGTCGCT GTCTCCAAGT 59555 .......... .......... .......... .......... .......... .......... 340 TCGCTGCCTA CAACAAGGTA AACAGCTCGT GACTCTTTCA ATCGTTTGAA CTATTTATGT 59495 .......... .......... .......... .......... .......... .......... 340 TAAATCCTGT TTCTGTCATC TGCCAACTCA AAAGGACTTT ATATGATAGT CCAGGTTTAA 59435 .......... .......... .......... .......... .......... .......... 340 ATCTTTTCCT GTAGTATTGA TCGTTTTGAA ATGATGAATA TGTATTTCGT TTTCAAGGTG 59375 .......... .......... .......... .......... .......... .......... 340 ATTTAGTATT TGTTCGAAGC TTGTTTTTTT TCTCTACTCA TGGTTTCTTC GAGTTTCTTG 59315 .......... .......... .......... .......... .......... .......... 340 CTGTTGGTTA TGCTTATCCT GATCTTGTTT TGATTATTGT TCATTCCTAT CGAGATGTTG 59255 .......... .......... .......... .......... .......... .......... 340 TGGTTTATGC ATTACTTGTT TTGGAGGTGT CCAAAATTTG TTCCTCTTTT CCTGAAGGTT 59195 .......... .......... .......... .......... .......... .......... 340 TTATTTTTTA GTTTCTTAGA TTGATTTTTT TGTGTTGTTG GGAAAATGAG GTCTGGCTTT 59135 .......... .......... .......... .......... .......... .......... 340 GTGTAAGTTG TTTCGAAGTT TGGCTGATTC GTCTATCTTT AAATATTTGG TTTTGGTTTC 59075 .......... .......... .......... .......... .......... .......... 340 TGTCGCTTAG ACACAGTTCA TTCCGGTTTG AATGCGCTAT TTTTTCCAGA AAATTATAGA 59015 .......... .......... .......... .......... .......... .......... 340 TACTACTCCG GTTTGTTCTA CCTTGTTCAC TGAAAGAGTG CATATCAATT GTAGTGTAAA 58955 .......... .......... .......... .......... .......... .......... 340 GAGTACCCCA ATCGATCTTG GTCGTACTCT GGAGTTTCTA GTAGCTGATT TTCTTTGTGT 58895 .......... .......... .......... .......... .......... .......... 340 TGACATTAGT TATTGTGAAT ATGACAAGAG TTCGCAGTTT TTTTAAATTT ATATATATAT 58835 .......... .......... .......... .......... .......... .......... 340 ATATATATAT ATGCATTTTA GCTCCGTTTT TGCTTAGAAA CAATATGCTC CAGTTGCTTT 58775 .......... .......... .......... .......... .......... .......... 340 TCTCTTTGAC TCTTTAAGTT CCAATGCTCA CTAGTATATG TATGTGCTAC TGTCAAGTAT 58715 .......... .......... .......... .......... .......... .......... 340 CATAATTAGC ATATCAACCT TGTTACCTTT AGTTCGGTTC ATTCGGTTTT CTTTAGAGTC 58655 .......... .......... .......... .......... .......... .......... 340 GTATGTGTCG GTTCGACTTG AATCCCTTAA GTGACCTTCA TTGTTGTATA TTCTACTTCA 58595 .......... .......... .......... .......... .......... .......... 340 TGCTCTTCTG CTTACTGTTT CAAATTAGTT GAAATACTTT GCATTGATTT GATTTTCTCA 58535 .......... .......... .......... .......... .......... .......... 340 TGCTTTTACC TATAGTCGTG TTCACTTCAT CTTGCATTCT TGTCTAGTTA TAGCTTCTTC 58475 .......... .......... .......... .......... .......... .......... 340 TTCTTTTTTT AAGTTTGTTC TGATCTCATT ATTCCGTCGA AGGATCGCTT AGGATAGTGT 58415 .......... .......... .......... .......... .......... .......... 340 AACACTGTTA AGTAAATTAT TACAGGACTA AAAATCCATT AATTGGTAAG GGTGATTTCT 58355 .......... .......... .......... .......... .......... .......... 340 TCAACTTGCT GGCTTACTTC CTAAAGCGAC TATTACTTTC TTTATTTTTT CTATAAAATT 58295 .......... .......... .......... .......... .......... .......... 340 GTTGTTGTTG TTCCATGCAC TCCTGTGCAA TTTCCTTTGA GGATTTGTTG TTCGAATTGT 58235 .......... .......... .......... .......... .......... .......... 340 CAATTTCCCA TTTTAAATGC CCTTTCCAGA AAGCTAAGGT ATTTTTCCCA GTATTTGTAT 58175 .......... .......... .......... .......... .......... .......... 340 TGGTTGGACT ACATTTAACT CCTTTCCTTT ATTTGTCTAT TGACCGCTTC GCCTATCTAT 58115 || |||| |||| ||||| |||||||||| .......... .......... .......... ...TG-CTAT TGACTGCTTC GCCTATCTAT 366 TCTATTATGG CCGGCTTGGA GACATCAGAG GAAGACCACC ATCTCTATCC GGATCATAGC 58055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATTATGG CCGGCTTGGA GACATCAGAG GAAGACCACC ATCTCTATCC GGATCATAGC 426 TTCATTCGTT CGTTGAACC 58036 ||||||| || ||||||||| TTCATTCATT CGTTGAACC 445 hqPGS_C08HBa0197A05.1-_SGN-E355020- (58141 58036) ******************************************************************************** EST sequence 5 -strand 593 n (File: SGN-E262727-) 1 CATTAGACTT GTCAATCCCT TGCTCTTTTT CCTTCTCTCT TCCAGTTCTC CCCCTCTACT 61 TTATTTGACA GGGGCGGAGA ATACCACTCT ATCAATAACA AGAAAAAAGT AGCAATTCCG 121 TTTCAAATGG TTTGAGCTTG GAAGCAACCT GCTATCTATC GATAGGCGAG AACAGACTGC 181 TATTGACTGC TTCGCCTATC TATTCTATTA TGGCCGGCTT GGAGACATCA GAGGAAGACC 241 ACCATCTCTA TCCGGATCAT AGCTTCATTC ATTCGTTGAA CCTTGGGGAT CACCATTAGC 301 ATTGAGGTCA ATCACCACAC TACCTCTATC ATACATACGA CATTACACGA AGCGAGAGTG 361 CATGGTCAAC ACACACCTAA AGCGCCTACG TTCCGCTTGC AGCCAATACA ACCACAACCT 421 AACTTGCACG AGATTCAACA ACCGAAGCTA CTGGTAGTCC CGAGGGGGCG GCATCCTCCT 481 ATAATAGTTA GCAGTACTGA ACAAGCGAGT CATCGGTCCG AGGAAAGAAA GGGGCCGCCT 541 TTGAAAAAAA AAAAAAAAGG AACTCGCTAG GCCTTCAGAA CAAAGGCGAT TCT Predicted gene structure (within gDNA segment 61219 to 54218): Exon 1 58138 58036 ( 103 n); cDNA 180 282 ( 103 n); score: 0.981 PPA cDNA 544 559 MATCH C08HBa0197A05.1- SGN-E262727- 0.981 103 0.174 C PGS_C08HBa0197A05.1-_SGN-E262727- (58138 58036) Alignment (genomic DNA sequence = upper lines): CTATTGACCG CTTCGCCTAT CTATTCTATT ATGGCCGGCT TGGAGACATC AGAGGAAGAC 58079 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGACTG CTTCGCCTAT CTATTCTATT ATGGCCGGCT TGGAGACATC AGAGGAAGAC 239 CACCATCTCT ATCCGGATCA TAGCTTCATT CGTTCGTTGA ACC 58036 |||||||||| |||||||||| |||||||||| | |||||||| ||| CACCATCTCT ATCCGGATCA TAGCTTCATT CATTCGTTGA ACC 282 hqPGS_C08HBa0197A05.1-_SGN-E262727- (58138 58036) ******************************************************************************** EST sequence 4 +strand 680 n (File: SGN-E346859+) 1 TTGATATGCC TTGGTATAAA AGAAGGCTTG ATCGATTGAC AGAATAAGAT TAGTGGAGCG 61 GGTGTCATGA ACCGACACGT AGAATTAGGG GATCGGGTAT CACGAACTGA CACGTAGAAC 121 TAGGGGATTG ATATACCGTG GTTTCACGGT ATAATTAATA CTTTTTCCTT AAGTTTAGTG 181 TGTCCGAAAG CCCTTTTTGT GCTAATTTTG ATATAAGTTT TTCTTTGTTT TGCAGGAAAT 241 CTGTCTAAAG CTGAATGCGG AGATTTTGAG CGATAAATGC AGAAGAGACC ACCTACGGAG 301 CTTATGACGG TCCGTCGTGC TTGTGACGGT CCGTAGGTGG CAGCGTAGAG AAGCTGCTGA 361 AGGAAGATGG GGAAGTCTGA CCAAGTGTGG GATTACGAAG CTTGTGACGG TCCGTCATGG 421 ATATGACGGT CCGTCCTGCA GGTTCGTCGC GAAGATCAGA GAAGTGATCC CAGTACCCAA 481 ATTCCAAAAG TTGAAGTATT TTGTAACGAA GACCCTCGAC GGACCGTCGT GCCTGTGACG 541 GTCCGTCACA CTTGCCGTCG AGGGGAATGA AGAAAGCAGC AGAAGAATTG CACCCAAGTA 601 TGGGGCGACG GAGCCCATGA CGGTCCGTCA TGACCACGAC GTTCTGTCGC GTGGTCCGTC 661 GACCCAGCCG CGTTTTGGCA Predicted gene structure (within gDNA segment 84500 to 88125): Exon 1 86941 87515 ( 575 n); cDNA 105 680 ( 576 n); score: 0.911 MATCH C08HBa0197A05.1+ SGN-E346859+ 0.911 575 0.846 C PGS_C08HBa0197A05.1+_SGN-E346859+ (86941 87515) Alignment (genomic DNA sequence = upper lines): AATTTACACT TGGAAATGAC GTATTGATAT ACCATGGTTT CACGATATAA TTAATACTTT 87000 || | |||| | ||| | | |||||||| ||| |||||| |||| ||||| |||||||||| AACTGACACG TAGAACTAGG GGATTGATAT ACCGTGGTTT CACGGTATAA TTAATACTTT 164 TTTCTTAAGT TTAGTATGTC CGAAAGCCTT TTTTGTGCTA ATTTTGATAT AAGTTTCTCT 87060 || ||||||| ||||| |||| |||||||| | |||||||||| |||||||||| |||||| ||| TTCCTTAAGT TTAGTGTGTC CGAAAGCCCT TTTTGTGCTA ATTTTGATAT AAGTTTTTCT 224 TTGTTTTGCA GGAAATCTGT CCAAAGCTGA TTGCGGAGAT TTTGAGCGAA AAATGCAGAA 87120 |||||||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||||||| TTGTTTTGCA GGAAATCTGT CTAAAGCTGA ATGCGGAGAT TTTGAGCGAT AAATGCAGAA 284 GAAACCACCT ACGGATCTTA TGACGGTCCG TCGTGCATGT GACGGTCCGT AGGTGGCAGC 87180 || ||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||||||||| GAGACCACCT ACGGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCCGT AGGTGGCAGC 344 GCAGAGAAGC TGCTAAAGGA AGATGGGGAA GTCTGACCAA GTGTGGTATT ACGAAGCTTG 87240 | |||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| |||||||||| GTAGAGAAGC TGCTGAAGGA AGATGGGGAA GTCTGACCAA GTGTGGGATT ACGAAGCTTG 404 TGACGGTCCG TCATGGCTAT GACGGTCTTT CCTGCAGGTT CATCGTGAAG ATCAGAGAAG 87300 |||||||||| |||||| ||| ||||||| | |||||||||| | ||| |||| |||||||||| TGACGGTCCG TCATGGATAT GACGGTCCGT CCTGCAGGTT CGTCGCGAAG ATCAGAGAAG 464 TGATTCCAGT AACCAGATTC CAAGAGTTGA AGTATTTTGA AACG-AGACC CTCGACGGAC 87359 |||| ||||| | ||| |||| ||| |||||| ||||||||| |||| ||||| |||||||||| TGATCCCAGT ACCCAAATTC CAAAAGTTGA AGTATTTTGT AACGAAGACC CTCGACGGAC 524 CGTTGTGCCT ATGACGGTCC GTCACACTTG CCGTCGAGGG GAAGGAAGAA AGCAGCAGAA 87419 ||| |||||| ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| CGTCGTGCCT GTGACGGTCC GTCACACTTG CCGTCGAGGG GAATGAAGAA AGCAGCAGAA 584 GAAATTGCA- CCAAGCATGG GACGACGGAG TCCACGACGG TCCGTTATGA CCACGACGGT 87478 | ||||||| ||||| |||| | |||||||| ||| ||||| ||||| |||| |||||||| | G-AATTGCAC CCAAGTATGG GGCGACGGAG CCCATGACGG TCCGTCATGA CCACGACGTT 643 CTGTCGCGTG GTCCGTTGAC TCAGCCGCGT TTTGGCA 87515 |||||||||| |||||| ||| ||||||||| ||||||| CTGTCGCGTG GTCCGTCGAC CCAGCCGCGT TTTGGCA 680 hqPGS_C08HBa0197A05.1+_SGN-E346859+ (86941 87515) ******************************************************************************** EST sequence 38 -strand 411 n (File: SGN-E577891-) 1 GCCAACAATG GCCTTCGAGT TCATGTCCCT GATATACCGT GGTTTCACGG TATAATTAAT 61 ACTTTTGCCT TAAGTTTAGT GTGTCCGTAA GCCTTTTTGT GCTAATTTTG GTATAAGTTT 121 CTCTTTATTT TGCAGGAAAT CTGTCCAAAG CTGAAAGCAG AGATTTTGAG CGAAAAAATG 181 TAGAAGAGAC CACCTACTGA GCTTATGACG GTCCATCGTG CCTTTGACGC TCCGTAGGTG 241 GCAGCGTAGA GAAGCTGCTG AAGGAAGATG GGGAAGTCTC ACCAAGTGTG GGATTACGAA 301 GATTGTGACG GTCCGTCATG GCTATGACGG TCCGTCCTGC AGGTTCGTCG TGAAGATCAG 361 AGAAGTGATT CCAGTACCCA GATTCCAAGA GCTGAAGTAT TTTGAAACGA A Predicted gene structure (within gDNA segment 85490 to 87955): Exon 1 86949 87345 ( 397 n); cDNA 13 410 ( 398 n); score: 0.894 MATCH C08HBa0197A05.1+ SGN-E577891- 0.894 397 0.966 C PGS_C08HBa0197A05.1+_SGN-E577891- (86949 87345) Alignment (genomic DNA sequence = upper lines): CTTGGAAATG ACGT-ATTGA TATACCATGG TTTCACGATA TAATTAATAC TTTTTTCTTA 87007 ||| || | | || ||| |||||| ||| ||||||| || |||||||||| |||| |||| CTTCGAGTTC ATGTCCCTGA TATACCGTGG TTTCACGGTA TAATTAATAC TTTTGCCTTA 72 AGTTTAGTAT GTCCGAAAGC CTTTTTTGTG CTAATTTTGA TATAAGTTTC TCTTTGTTTT 87067 |||||||| | ||||| |||| | |||||||| ||||||||| |||||||||| ||||| |||| AGTTTAGTGT GTCCGTAAGC C-TTTTTGTG CTAATTTTGG TATAAGTTTC TCTTTATTTT 131 GCAGGAAATC TGTCCAAAGC TGATTGCGGA GATTTTGAGC G-AAAAATGC AGAAGAAACC 87126 |||||||||| |||||||||| ||| || || |||||||||| | ||||||| |||||| ||| GCAGGAAATC TGTCCAAAGC TGAAAGCAGA GATTTTGAGC GAAAAAATGT AGAAGAGACC 191 ACCTACGGAT CTTATGACGG TCCGTCGTGC ATGTGACGGT CCGTAGGTGG CAGCGCAGAG 87186 |||||| || |||||||||| ||| |||||| | ||||| | |||||||||| ||||| |||| ACCTACTGAG CTTATGACGG TCCATCGTGC CTTTGACGCT CCGTAGGTGG CAGCGTAGAG 251 AAGCTGCTAA AGGAAGATGG GGAAGTCTGA CCAAGTGTGG TATTACGAAG CTTGTGACGG 87246 |||||||| | |||||||||| |||||||| | |||||||||| ||||||||| ||||||||| AAGCTGCTGA AGGAAGATGG GGAAGTCTCA CCAAGTGTGG GATTACGAAG ATTGTGACGG 311 TCCGTCATGG CTATGACGGT CTTTCCTGCA GGTTCATCGT GAAGATCAGA GAAGTGATTC 87306 |||||||||| |||||||||| | ||||||| ||||| |||| |||||||||| |||||||||| TCCGTCATGG CTATGACGGT CCGTCCTGCA GGTTCGTCGT GAAGATCAGA GAAGTGATTC 371 CAGTAACCAG ATTCCAAGAG TTGAAGTATT TTGAAACGA 87345 ||||| |||| |||||||||| ||||||||| ||||||||| CAGTACCCAG ATTCCAAGAG CTGAAGTATT TTGAAACGA 410 hqPGS_C08HBa0197A05.1+_SGN-E577891- (86949 87345) ******************************************************************************** EST sequence 68 -strand 534 n (File: SGN-E286708-) 1 TGGTGGCCAA GTGATATACC GTGGTTTCAT GGTATTATTA ATACTTTTTC CTTAAGTTTA 61 GTGTGTCTAA AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA 121 ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG 181 GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC 241 TGAAGGAAGA TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG 301 TGTCTATGAC GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC 361 CATATTCCAA GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG 421 ACGGTCCGCC ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCATAA 481 GTATGGGACG ACGGAGTCCA TGACGGTCCG TCGTGACCAT GACGGACCTC GCGA Predicted gene structure (within gDNA segment 85364 to 89040): Exon 1 86957 87486 ( 530 n); cDNA 4 533 ( 530 n); score: 0.863 MATCH C08HBa0197A05.1+ SGN-E286708- 0.863 530 0.993 C PGS_C08HBa0197A05.1+_SGN-E286708- (86957 87486) Alignment (genomic DNA sequence = upper lines): TGACGTATTG ATATACCATG GTTTCACGAT ATAATTAATA CTTTTTTCTT AAGTTTAGTA 87016 || | | || ||||||| || |||||| | | || ||||||| |||||| ||| ||||||||| TGGCCAAGTG ATATACCGTG GTTTCATGGT ATTATTAATA CTTTTTCCTT AAGTTTAGTG 63 TGTCCGAAAG CCTTTTTTGT GCTAATTTTG ATATAAGTTT CTCTTTGTTT TGCAGGAAAT 87076 |||| ||| || ||||||| |||||||| |||| ||||| || ||| ||| |||||||||| TGTCTAAAAT CC-TTTTTGT GCTAATTTCT ATATTAGTTT CTTTTTATTT TGCAGGAAAT 122 CTGTCCAAAG CTGATTGCGG AGATTTTGAG CGAA-AAATG CAGAAGAAAC CACCTACGGA 87135 |||||||||| |||| ||||| |||||||||| |||| ||||| ||||||| || |||||||||| CTGTCCAAAG CTGAATGCGG AGATTTTGAG CGAAGAAATG CAGAAGAGAC CACCTACGGA 182 TCTTATGACG GTCCGTCGTG CATGTGACGG TCCGTAGGTG GCAGCGCAGA GAAGCTGCTA 87195 ||||||||| |||||||||| | |||||||| |||||||||| ||||| || | ||||||| GCTTATGACG GTCCGTCGTG CTTGTGACGG TCCGTAGGTG TCAGCGTAGT GCAGCTGCTG 242 AAGGAAGATG GGGAAGTCTG ACCAAGTGTG GTATTACGAA GCTTGTGACG GTCCGTCATG 87255 |||||||||| |||||||||| ||||||| || | ||||||| |||||||||| |||| || || AAGGAAGATG GGGAAGTCTG ACCAAGTATG GGGTTACGAA GCTTGTGACG GTCCATCGTG 302 GCTATGACGG TCTTTCCTGC AGGTTCATCG TGAAGATCAG AGAAGTGATT CCAGTAACCA 87315 ||||||||| || |||| | |||||| || ||||| |||| |||||| || |||||| ||| TCTATGACGG TCCGTCCTAC AGGTTCGTCA TGAAGTTCAG AGAAGTAATC CCAGTACCCA 362 GATTCCAAGA GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCCTATGAC 87374 ||||||||| ||| |||| | |||| |||| || ||||||| |||||||||| |||||||||| TATTCCAAGA GTTAAAGTGT TTTGGAACGA AGGCCCTCGA CGGACCGTTG TGCCTATGAC 422 GGTCCGTCAC ACTTGCCGTC GAGGGGAAGG AAGAA-AGCA GCAGAAGAAA TTGCACCAAG 87433 |||||| || ||||||||| ||||| || | ||||| |||| || |||||| ||||| ||| GGTCCGCCAT ACTTGCCGTT GAGGGTAATG AAGAAGAGCA ACAAAAGAAA TTGCA-TAAG 481 CATGGGACGA CGGAGTCCAC GACGGTCCGT TATGACCACG ACGGTCTGTC GCG 87486 ||||||||| ||||||||| |||||||||| |||||| | |||| | || ||| TATGGGACGA CGGAGTCCAT GACGGTCCGT CGTGACCATG ACGGAC-CTC GCG 533 hqPGS_C08HBa0197A05.1+_SGN-E286708- (86957 87486) ******************************************************************************** EST sequence 40 -strand 716 n (File: SGN-E578039-) 1 GTAATCCTTA TACTCAAACT AAAATCACTG TGTGAAAAAG GAGGATTTTG TCTTATAGTG 61 AGGACACTAG TTGCAATACT AGAATTGTTA GCACCTCGGT GAGAAATTGA AGAGGATAGG 121 TGTTAGTGCA TGGTAAGTCT GTGTCATATT CTGATCCCAC AAAATTCAAA CCTAATAGTG 181 ATAGCATGCA TAGATTTGAT GAGATTAATC GGGATTGATA GCCAAATGAT TGCAAAGGAT 241 AAAACATGGA TACTATTGTA CAAAGATTGT GTAGTGAGTC ATAGTGCGTC GCTTGAGGAC 301 AAACAACTAA TTTAAGTTGA GGGTGTTGAT ATACCGTGGT TTCACGGTAT TATTAATACT 361 TTTTCCTTAA GCTTAGTGTG TCCAAAAGCC TTTTTGTGCT AATTTTTATA TAAGTTACTC 421 TTTGTTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA AGAAATGCAG 481 AAGAAACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC GTAGGTGGAA 541 GCGTAGTGCA GCTGCTGAAG GAAGATAGGG AAGTCTGACT AAGTGTGGGA TTACGAAGCT 601 TGTGACGGTC CGTCGTGGAT CTGACGGTCC GTCCTGCAGG TTCGTCGTGA AGTTCAGAGA 661 AGTGATCCCA GTACCCAAAT TCCAAGAGTT GAAGTGTATT AGAACAAAGA CCCTCG Predicted gene structure (within gDNA segment 81920 to 89556): Exon 1 82565 82579 ( 15 n); cDNA 295 308 ( 14 n); score: 0.733 Intron 1 82580 85813 (3234 n); Pd: 0.585 (s: 0), Pa: 0.988 (s: 0) Exon 2 85814 85829 ( 16 n); cDNA 309 322 ( 14 n); score: 0.625 Intron 2 85830 86960 (1131 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 86961 87353 ( 393 n); cDNA 323 716 ( 394 n); score: 0.893 MATCH C08HBa0197A05.1+ SGN-E578039- 0.893 424 0.592 C PGS_C08HBa0197A05.1+_SGN-E578039- (82565 82579,85814 85829,86961 87353) Alignment (genomic DNA sequence = upper lines): GAGGTCCAAG AACATGTATT GATGATCTCA ACACAGCTAG TTATAAGATT GTCACTTCCT 82624 |||| | || ||| | GAGGACAAAC AAC-T..... .......... .......... .......... .......... 308 TTGATGCTTA AGGTGAGAAT ACGATTTTTT GAGGCATGAT TCTTGGCCAA TTAAGCTCTT 82684 .......... .......... .......... .......... .......... .......... 308 TTCTCCAAAC AAACTTGTGA CAAGGGACCT AGTCCACTGT CTACTCAAAA TAATATTTGC 82744 .......... .......... .......... .......... .......... .......... 308 AAACGACAAA GTTAGTGATG CTTGTGTTTA AGAGAAGCAT ATTTTAATCT TCCAAAAAAC 82804 .......... .......... .......... .......... .......... .......... 308 TTTTGGCTAA AGTGGTGAAA ACTATATGTC CTGTGACCAA TAGGGTGATA TTAGGAAGTT 82864 .......... .......... .......... .......... .......... .......... 308 TGATTTCAAT GGTGATGAAA GAATTTGTGA GATACATTTT GTGTAACAAG GCTTATCATG 82924 .......... .......... .......... .......... .......... .......... 308 TTCCTAAAAA CAAGAATAGT TTATTAACAA AAGGTGTTCA TGTGATCTTC TGATGAGTTA 82984 .......... .......... .......... .......... .......... .......... 308 AAACCAATTG AGAATGTGCA AAACAAGAAG TTTCTGATAT GGAAGAATTA CTTTTCAGAG 83044 .......... .......... .......... .......... .......... .......... 308 AGATGGGCTA AACAGTGAGC TTGTTGAAGA ACATCATTTT CATGAATCCA GCAATCTTAA 83104 .......... .......... .......... .......... .......... .......... 308 GGAAGTTGAT ACAGATGATG AACCTAATGA GGGACCCAGT CTTGCAGACA AGGCTGAACA 83164 .......... .......... .......... .......... .......... .......... 308 AAGATGATGC AATTCAAAGT GATAATGTGA TTTGTGAAGG TGAGAATGCA CAAGTTGATC 83224 .......... .......... .......... .......... .......... .......... 308 AAGCTCAGTT TGAAAGAAGC AAAGTATGCT ACTCGGTTCC CGACAAGCTG ACAAATTGCT 83284 .......... .......... .......... .......... .......... .......... 308 AGAGTTCTTC TTCAATGATG GTTTCAAAAG AAAAAAAATA AAAAAAAATC CTCTTCTTTT 83344 .......... .......... .......... .......... .......... .......... 308 TAACACAAGG AAATGACTTG TTTATTATCC AAGTACACAT CGATGATATC ATCTTTGAAG 83404 .......... .......... .......... .......... .......... .......... 308 CAACTTCTGA AGTGTGTTGG GTAAAGAGTC TTTTGGACTC ATGATTATTG AGTTGTGAAG 83464 .......... .......... .......... .......... .......... .......... 308 TGACCATTAT GGAAGAATTG ATTTTTTTCT CGGAGTTGTA AATCAAGCAA ACTTCTAAAC 83524 .......... .......... .......... .......... .......... .......... 308 TTTGCTATAT GGAAGATCAA ACTGCTGACA TTTTCATTTA AGTTCTAAGC AAGGAACAAT 83584 .......... .......... .......... .......... .......... .......... 308 TTTTCAAGAA TAGGGACCTA ATTCCAACTC AGAGAAGCTA TTGAAGAGGT TTCATATTAT 83644 .......... .......... .......... .......... .......... .......... 308 GGAAGCCAAG TCAACTGATA TTCCCATAGA GACCAACTCG ATGCTAGATT CTGATAGATA 83704 .......... .......... .......... .......... .......... .......... 308 TGTTCCAGAT ATAACTGATG CAAGTGTTAA GATTTATGCA AGATTCCATG GTTGTCCAAT 83764 .......... .......... .......... .......... .......... .......... 308 GGAATCAGAT TTGACTGTTG CTCAAAGAAT CATGAGACAT TTGAAGAAGA CAGGGACTTG 83824 .......... .......... .......... .......... .......... .......... 308 GTTCTATTCT ATCCATCAGG AGATGTTTTG ACTTGGAGGA ATATGGTGAT GTAGAGTCTG 83884 .......... .......... .......... .......... .......... .......... 308 TTGGGTATCA CGCTGATAGA AAGAGAAGGA TTGACTCATT TTCTGGGCTC ATATCTCCTT 83944 .......... .......... .......... .......... .......... .......... 308 AATGAGATAT AAAAGACAAC ATTTTATTGT TCTTTCAAAA ACTAAGGCAA GGTATGTAAC 84004 .......... .......... .......... .......... .......... .......... 308 AGATGCAGGC TGGTGTGCTC AACTCCCGTG GATCAAACAA CAATGTGAAG TTCTTAGAGT 84064 .......... .......... .......... .......... .......... .......... 308 GGTTTCTCTG GCTACCCATC TCTTATGTTC TATCACGAGT TCTCTCACTA TGGCTAAGAA 84124 .......... .......... .......... .......... .......... .......... 308 CTCAATCCAC CATAACAGGA TAAGCATATT GATGTGATAC ATCACTTTCT AAGGGATCAT 84184 .......... .......... .......... .......... .......... .......... 308 TTTCAGAAAG GAGATATCAG TAAGATCAAA GAATTAATCG TTGGTATCTT AACAAAATCT 84244 .......... .......... .......... .......... .......... .......... 308 CTGATAAGGG ACCTGGTCAA GATAAATAAA TTGAAGGTGA GGATGCTGAA ACTGAACTGG 84304 .......... .......... .......... .......... .......... .......... 308 ATGGATCATG CCTGAAGAAA TCAACCATCT CATGACTATG CAAAGGGAGT ATCATTGTTT 84364 .......... .......... .......... .......... .......... .......... 308 TTCATTTATG TATGTTTTAG CAAATTTAGT GTCATACCTT TTATAGATAT ACACACATGG 84424 .......... .......... .......... .......... .......... .......... 308 TAGACTTGCT GAAGGAAAAG GGAGGTCAGG ACAGATATAG ACAATCACAT TCAACCTACA 84484 .......... .......... .......... .......... .......... .......... 308 GAAAGGGACC TGGTACGTTC TCAAAGAGAG TCGTTGGCAT CCTGGGTTGC CATTTTAGGA 84544 .......... .......... .......... .......... .......... .......... 308 GACAGTGCTT CCACCCATCT AGAATATATA CAAGCCTCCT CAAATGTAGA AGGTTCCACA 84604 .......... .......... .......... .......... .......... .......... 308 TCAGTACCAA AGAGTGAAAC AGATGCTTGA TAGGAAGGTC TCAAGTGATC ATACGCAAGA 84664 .......... .......... .......... .......... .......... .......... 308 GAATGGTCAA CGAAATAGAC TGTCTTGGAG TCATGGTTGA GCTTACCAGA AGCTCCATAG 84724 .......... .......... .......... .......... .......... .......... 308 TTCTTCATCC ATAAAAGTTC TTAGATGCAC CTATAAGACC TTCTTTGATC AAGAATACTT 84784 .......... .......... .......... .......... .......... .......... 308 GGGGAAGTAG TGGGATCAGG CTCAACATGA ACTACTAGAT CAATAAGAGC AAAAGTTAGG 84844 .......... .......... .......... .......... .......... .......... 308 AGTAATGCGC AGGATCATTG TCTGAGTAAA AATTGGTGGA AGCTGGAAAA ACAAAGAGAA 84904 .......... .......... .......... .......... .......... .......... 308 ACACAGATTC TCTTAGACAT ACCATACCTA CGGAGGACCA TTTGTTTGTC TTTGAAATTA 84964 .......... .......... .......... .......... .......... .......... 308 TATAAAATAT ATTGATCAAT GTGTTCACTA TATCCCAGGT ATATGGGCAA CTATACCTGT 85024 .......... .......... .......... .......... .......... .......... 308 AGGCTGAAAT TTGTCATGAA TATGCATATC GAACCACAAA ACAAAATCAA GAAATTCACA 85084 .......... .......... .......... .......... .......... .......... 308 AAAATCTAAA GTTAAAAAAT CTGATACTAT GGTTTTACTT AAAATTTTAA TTCTTATTTA 85144 .......... .......... .......... .......... .......... .......... 308 TTAGATAATA TAAAATTACC ACCAACTTAT TGTCTAAAAT CACGTTATTA TACAATAGTT 85204 .......... .......... .......... .......... .......... .......... 308 TTTATTTAAT AGACATACAT TGAATGAAGT CAAAGAGAGT AGTATAGATA TACATTGAAT 85264 .......... .......... .......... .......... .......... .......... 308 GAAGTTGACA GATTAGTAAA GTCCAAGCAC GTGTTAAGTA CCTAGCAATT CTCGCCCCAA 85324 .......... .......... .......... .......... .......... .......... 308 AAAACAAACA AACAAGAAAT ACATTTTAAT CAAAATAAAT AGGAGAAATA AGAACTATAT 85384 .......... .......... .......... .......... .......... .......... 308 ACAAATGAAA ACAATATAAC TTTAAAATAC TCTTTTATAG TTGATAAATT ATTTATAGTC 85444 .......... .......... .......... .......... .......... .......... 308 AAGAGTGATA AAAATTAACA AATTTTAAGA ATTTTTCTTT TTGTTTTGAA TTTTGTTGCA 85504 .......... .......... .......... .......... .......... .......... 308 ATTCATCATA GCTACAAAGT TGTGAATGTA ACTTGATTGT ATGATTTCAG GCTGATGTGT 85564 .......... .......... .......... .......... .......... .......... 308 GTTACGCTTA CCAAATAATG AAGGCTGGTG GTCTTCAGGA TGAGAACATC ACTGTATTCA 85624 .......... .......... .......... .......... .......... .......... 308 TGTACAATGA TATTGCTAAC AATACAGAAA ACCCTAGACC TGGTGTCATC ATCAATAACC 85684 .......... .......... .......... .......... .......... .......... 308 TACATGGCCA TGATGTTTAC AAAGGTGTCC CAAAGGTTTG TTATTTTTGT GTTTAATTTT 85744 .......... .......... .......... .......... .......... .......... 308 TTAGAAATTT TTCAAGATTA GAGTTTTTGT TAGCTTATGA GGGGTTTTCT TTCTCTTTTG 85804 .......... .......... .......... .......... .......... .......... 308 TTGAGGCAGG ATTATGTAGG TGAAGATGCT AATGCTAACA ACGTTTACAA TGTCATCCTT 85864 ||| | || ||| | .........A ATT-T-AAGT TGAGG..... .......... .......... .......... 322 GCAAACAAAA GTGGTGTTGT TGGAGGAAGT GGGAATGTTT TGAAGAGTGG CCCATATGAC 85924 .......... .......... .......... .......... .......... .......... 322 CATATCTTCA TATACTATAC TGATCATGGT ACCGCTGGAT TTATTAGTAA GTATCTTCAT 85984 .......... .......... .......... .......... .......... .......... 322 TGCATTAATT TGTTTTTTCT TCTGTCCTAA TTTAAGGGTC TTACTTTTCT TTTTGGTTTG 86044 .......... .......... .......... .......... .......... .......... 322 CCGAGTTTCT TTTTATATTT AGCAAGTTTT TCAATTTTGA TATTCCATAT GCAAGTTTAA 86104 .......... .......... .......... .......... .......... .......... 322 CGCCACAAGA TTAGAAACTC TTTAGCTTCA TGACACTTAA ACTGGGACAG TTGGAGTAAT 86164 .......... .......... .......... .......... .......... .......... 322 TATTATCTCA GAAAGTTAGT TTGTTTGTTC ATTGAAAAGA ATTGGAATCA ACTAGAAATG 86224 .......... .......... .......... .......... .......... .......... 322 TGACTTTCTG ACATAATAAA CTTATTAGTT GAGTCACTAT GTAAAAAATG AGACCCTATT 86284 .......... .......... .......... .......... .......... .......... 322 TTGAAGTTGT GAAAATGTAA CATTCTAATA AGAAATTCTT AATCCATATT TTGTCGCAGT 86344 .......... .......... .......... .......... .......... .......... 322 TGTTGTGAAT GTGTATAAGC AATTCATGTT AGGAACTTAC CGTCTAATGA CATAATTAGG 86404 .......... .......... .......... .......... .......... .......... 322 CAATTGGAAA ATTAAGCTAA TACTCGTTAC AAATCAAAGT TTGCAATTTG TGATACTTTG 86464 .......... .......... .......... .......... .......... .......... 322 AAACTGATTA GGATATGCAT AATTTTTTTA TTGTTTTTAT TATTATCAGC AATGCCAAGT 86524 .......... .......... .......... .......... .......... .......... 322 GGAGAATCGA TTTACACAGA TGATCTATTT AAAGTGTTGA AAAAGAAGCA TGCTTCAGGG 86584 .......... .......... .......... .......... .......... .......... 322 ACGTATGACA GTCTAGTAAC TTGCTTGCTT TAGTTTTTTA GGGTTCCTTT CCCTTTGCGT 86644 .......... .......... .......... .......... .......... .......... 322 GAATGCTTTA GGGATGTATA AAGTCTGTGT TTTATGTTGG ATGATGTTCA GGTGTTTTAC 86704 .......... .......... .......... .......... .......... .......... 322 CTAGAAGCCT ATGAGTCTGG AAGCATGTTT TGGCACATAC TGTGGCGATG GTACTCTTGA 86764 .......... .......... .......... .......... .......... .......... 322 TGATCCCTGC TTTGGTCAGT GTCCCCCTAC CGAGTTTAAG GGTGTTTGCT TGGGAGACTT 86824 .......... .......... .......... .......... .......... .......... 322 GTTCAGTGTT TCCTAGATGG AAGATAGGTA TAAATAACTT CTACATCCTC TGTTCTTGTA 86884 .......... .......... .......... .......... .......... .......... 322 GTCCACATTG TTAGGAAGAA GTATGCCAAG TATAGTTTCT TGTATTTTGT TTCTATAATT 86944 .......... .......... .......... .......... .......... .......... 322 TACACTTGGA AATGACGTAT TGATATACCA TGGTTTCACG ATATAATTAA TACTTTTTTC 87004 || | ||||||||| |||||||||| ||| ||||| |||||||| | .......... ......GTGT TGATATACCG TGGTTTCACG GTATTATTAA TACTTTTTCC 366 TTAAGTTTAG TATGTCCGAA AGCCTTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT 87064 ||||| |||| | ||||| || |||| ||||| |||||||||| | |||||||| | |||||||| TTAAGCTTAG TGTGTCCAAA AGCC-TTTTT GTGCTAATTT TTATATAAGT TACTCTTTGT 425 TTTGCAGGAA ATCTGTCCAA AGCTGATTGC GGAGATTTTG AGCGAA-AAA TGCAGAAGAA 87123 |||||||||| |||||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| TTTGCAGGAA ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAA 485 ACCACCTACG GATCTTATGA CGGTCCGTCG TGCATGTGAC GGTCCGTAGG TGGCAGCGCA 87183 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| ||| |||| | ACCACCTACG GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGGAAGCGTA 545 GAGAAGCTGC TAAAGGAAGA TGGGGAAGTC TGACCAAGTG TGGTATTACG AAGCTTGTGA 87243 | | |||||| | |||||||| | |||||||| |||| ||||| ||| |||||| |||||||||| GTGCAGCTGC TGAAGGAAGA TAGGGAAGTC TGACTAAGTG TGGGATTACG AAGCTTGTGA 605 CGGTCCGTCA TGGCTATGAC GGTCTTTCCT GCAGGTTCAT CGTGAAGATC AGAGAAGTGA 87303 ||||||||| ||| | |||| |||| |||| |||||||| | ||||||| || |||||||||| CGGTCCGTCG TGGATCTGAC GGTCCGTCCT GCAGGTTCGT CGTGAAGTTC AGAGAAGTGA 665 TTCCAGTAAC CAGATTCCAA GAGTTGAAGT AT-TTTGAAA CGAGACCCTC G 87353 | |||||| | || ||||||| |||||||||| | || ||| |||||||| | TCCCAGTACC CAAATTCCAA GAGTTGAAGT GTATTAGAAC AAAGACCCTC G 716 hqPGS_C08HBa0197A05.1+_SGN-E578039- (86961 87353) ******************************************************************************** EST sequence 52 -strand 800 n (File: SGN-E540293-) 1 AGTAGCCTAA ACTAAGTCTA TGTGAGAGGT CTAGAGCCAA GGAAGAGGGC TAGGGCAGCC 61 AAATTTTCCC CAGACATTTC CCACCTTCTC ACGACCACCG TAATGGACAA TGCTGAGGAC 121 CACAGATCGT GGTGGGCTAG GCTGTGGCTA GGTGAAATCT GCCCAAAATA GCCCCCTCCA 181 CACAAGCTAT TTCACGGCTC GTGAAAGCTA TTATTGGCCG TGGAAAGGCT CGTGGTGGGG 241 ACTTAGTTTT GAGGGGTTAA GGAAGTGGTG GCCAAGTGAT ATACCGTGGT TTCATGGTAT 301 TATTAATACT TTTTCCTTAA GTTTAGTGTG TCTAAAATCC TTTTTGTGCT AATTTCTATA 361 TTAGTTTCTT TTTATTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA 421 AGAAATGCAG AAGAGACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC 481 GTAGGTGTCA GCGTAGTGCA GCTGCTGAAG GAAGATGGGG AAGTCTGACC AAGTATGGGG 541 TTACGAAGCT TGTGACGGTC CATCGTGTCT ATGACGGTCC GTCCTACAGG TTCGTCATGA 601 AGTTCAGAGA AGTAATCCCA GTACCCATAT TCCAAGAGTT AAAGTGTTTT GGAACGAAGG 661 CCCTCGACGG ACCGTTGTGC CTATGACGGT CCGCCATACT TGCCGTTGAG GGTAATGAAG 721 AAGAGCAACA AAAGAAATTG CATAAGTATG GGACGACGGA GTCCATGACG GTCCGTCGTG 781 ACCATGACGG ACCTCGCGAC Predicted gene structure (within gDNA segment 82714 to 89050): Exon 1 86965 87486 ( 522 n); cDNA 277 798 ( 522 n); score: 0.869 MATCH C08HBa0197A05.1+ SGN-E540293- 0.869 522 0.652 C PGS_C08HBa0197A05.1+_SGN-E540293- (86965 87486) Alignment (genomic DNA sequence = upper lines): TGATATACCA TGGTTTCACG ATATAATTAA TACTTTTTTC TTAAGTTTAG TATGTCCGAA 87024 ||||||||| |||||||| | ||| ||||| |||||||| | |||||||||| | |||| || TGATATACCG TGGTTTCATG GTATTATTAA TACTTTTTCC TTAAGTTTAG TGTGTCTAAA 336 AGCCTTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 87084 | || ||||| |||||||||| |||| ||| |||| ||| | |||||||||| |||||||||| ATCC-TTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA ATCTGTCCAA 395 AGCTGATTGC GGAGATTTTG AGCGAA-AAA TGCAGAAGAA ACCACCTACG GATCTTATGA 87143 |||||| ||| |||||||||| |||||| ||| ||||||||| |||||||||| || ||||||| AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 455 CGGTCCGTCG TGCATGTGAC GGTCCGTAGG TGGCAGCGCA GAGAAGCTGC TAAAGGAAGA 87203 |||||||||| ||| |||||| |||||||||| || ||||| | | | |||||| | |||||||| CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC TGAAGGAAGA 515 TGGGGAAGTC TGACCAAGTG TGGTATTACG AAGCTTGTGA CGGTCCGTCA TGGCTATGAC 87263 |||||||||| ||||||||| ||| ||||| |||||||||| |||||| || || ||||||| TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG TGTCTATGAC 575 GGTCTTTCCT GCAGGTTCAT CGTGAAGATC AGAGAAGTGA TTCCAGTAAC CAGATTCCAA 87323 |||| |||| ||||||| | | ||||| || |||||||| | | |||||| | || ||||||| GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC CATATTCCAA 635 GAGTTGAAGT ATTTTGAAAC G-AGACCCTC GACGGACCGT TGTGCCTATG ACGGTCCGTC 87382 ||||| |||| ||||| ||| | || ||||| |||||||||| |||||||||| |||||||| | GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG ACGGTCCGCC 695 ACACTTGCCG TCGAGGGGAA GGAAGAA-AG CAGCAGAAGA AATTGCACCA AGCATGGGAC 87441 | |||||||| | ||||| || |||||| || || || |||| ||||||| | || ||||||| ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCA-TA AGTATGGGAC 754 GACGGAGTCC ACGACGGTCC GTTATGACCA CGACGGTCTG TCGCG 87486 |||||||||| | |||||||| || |||||| ||||| | ||||| GACGGAGTCC ATGACGGTCC GTCGTGACCA TGACGGAC-C TCGCG 798 hqPGS_C08HBa0197A05.1+_SGN-E540293- (86965 87486) ******************************************************************************** EST sequence 70 -strand 522 n (File: SGN-E243969-) 1 GGTATAATTA ATACTTTTGC CTTAAGTTTA AAGTGTCCGA AAGCCTTTTT TGTGCTAATT 61 TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCAA AAGCTGAAAG CGGAGATTTT 121 GAGCAAAAAA ATGCAGAAGA GACCACCTAC GGAGCTTTTG AAGGTCTGTC GTGCTTGTGA 181 CGGTCCGTAG GTGGTAGCGT AGAGAAGCTG CTGAAGGAAG ATGGGGAAGT CTGACCAAGT 241 GTGGGATTAC GAAGCTTGTG ACGGTCCGTC ATGGCTATGA CGGTCCGTCC TGCAGGTTCG 301 TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CCAGATTCCA AGAGTTGAAG TATTTTGAAA 361 CGAAGACCCT CGACAGACCG TTGTACCTAT GACGGTCCGT TACACTTGCC GTCGAGGGGA 421 ATGAAGAAAG CAGCAGAAGA AATTGCACCA AGTATGGGAC GACAGAGTCC ACGACGGTCC 481 GTCGCGTGGT CCGTCGACCA AGCCGCGTTT TGGCAGATTT CC Predicted gene structure (within gDNA segment 86356 to 88463): Exon 1 86986 87461 ( 476 n); cDNA 3 480 ( 478 n); score: 0.926 MATCH C08HBa0197A05.1+ SGN-E243969- 0.926 476 0.912 C PGS_C08HBa0197A05.1+_SGN-E243969- (86986 87461) Alignment (genomic DNA sequence = upper lines): TATAATTAAT ACTTTTTTCT TAAGTTTAGT ATGTCCGAAA GCCTTTTTTG TGCTAATTTT 87045 |||||||||| |||||| || |||||||| ||||||||| |||||||||| |||||||||| TATAATTAAT ACTTTTGCCT TAAGTTTAAA GTGTCCGAAA GCCTTTTTTG TGCTAATTTT 62 GATATAAGTT TCTCTTTGTT TTGCAGGAAA TCTGTCCAAA GCTGATTGCG GAGATTTTGA 87105 |||||||||| |||||||||| |||||||||| |||||| ||| ||||| ||| |||||||||| GATATAAGTT TCTCTTTGTT TTGCAGGAAA TCTGTCAAAA GCTGAAAGCG GAGATTTTGA 122 GC-GAAAAAT GCAGAAGAAA CCACCTACGG ATCTTATGAC GGTCCGTCGT GCATGTGACG 87164 || |||||| |||||||| | |||||||||| | ||| ||| |||| ||||| || ||||||| GCAAAAAAAT GCAGAAGAGA CCACCTACGG AGCTTTTGAA GGTCTGTCGT GCTTGTGACG 182 GTCCGTAGGT GGCAGCGCAG AGAAGCTGCT AAAGGAAGAT GGGGAAGTCT GACCAAGTGT 87224 |||||||||| || |||| || |||||||||| ||||||||| |||||||||| |||||||||| GTCCGTAGGT GGTAGCGTAG AGAAGCTGCT GAAGGAAGAT GGGGAAGTCT GACCAAGTGT 242 GGTATTACGA AGCTTGTGAC GGTCCGTCAT GGCTATGACG GTCTTTCCTG CAGGTTCATC 87284 || ||||||| |||||||||| |||||||||| |||||||||| ||| ||||| ||||||| || GGGATTACGA AGCTTGTGAC GGTCCGTCAT GGCTATGACG GTCCGTCCTG CAGGTTCGTC 302 GTGAAGATCA GAGAAGTGAT TCCAGTAACC AGATTCCAAG AGTTGAAGTA TTTTGAAACG 87344 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| GTGAAGATCA GAGAAGTGAT CCCAGTACCC AGATTCCAAG AGTTGAAGTA TTTTGAAACG 362 -AGACCCTCG ACGGACCGTT GTGCCTATGA CGGTCCGTCA CACTTGCCGT CGAGGGGAAG 87403 ||||||||| || ||||||| || ||||||| |||||||| | |||||||||| ||||||||| AAGACCCTCG ACAGACCGTT GTACCTATGA CGGTCCGTTA CACTTGCCGT CGAGGGGAAT 422 GAAGAAAGCA GCAGAAGAAA TTGCACCAAG CATGGGACGA CGGAGTCCAC GACGGTCC 87461 |||||||||| |||||||||| |||||||||| ||||||||| | |||||||| |||||||| GAAGAAAGCA GCAGAAGAAA TTGCACCAAG TATGGGACGA CAGAGTCCAC GACGGTCC 480 hqPGS_C08HBa0197A05.1+_SGN-E243969- (86986 87461) ******************************************************************************** EST sequence 97 -strand 746 n (File: SGN-E546025-) 1 GAAGACCAGT AACTCAAGCT GAGGCATTCA AGGCAACACA CATAAGAAAG AAGAAAAATN 61 CCGAAGATCC AGACGTGTGG ATTGAGCCGC GAGCTGAAGT GATCATGAAA TTTGTCCAAA 121 GCCAAATGCG GAGATTTTGA GAGAAGAAAT GCAGAAGAGA CCACCTATGG AGCTGATGAC 181 GGTCCGTCGT GCTTGTGACG GTCCGTAGGT GGCAGTGTAG AGAAGTTGCT GAAGGAAGAT 241 GGGGAAGTCT GACCAAGTGT GGGATTACGA AGCTTGTGAC GGTCCGTCAT GGCTATGACG 301 GTCTGTTCTG CAGGTTCGTC GTGGAGTTCA GAGAAGTAAT CCAGTACCTA GATTCCGAGA 361 GTTGAAGTAT TTTGAAACGA AGACCCTTGA CAGACCGTTG TGCCTATGAC AGTCCGTCAT 421 ACTTGCCGTC GAGGGGAATG AAGAGAGCAG CAGAAGAAAG TGCACAAGTA TGGGACGACG 481 GAGTCCATGA CGGTCCGTCA TGACCACGAC GGTCCGTCGC ATGGTCCGTC GACCCAGCCG 541 CGTTTTGGCA GATTTCCACC AATTAGAATT CTTGTGTAAT TAGGTTTTTA TTTTTATATA 601 AATAGTTCGA AAAACCTCAT TTTTGAGGTT AGACACCTGA TAGTTAGACT CTTAGATTGT 661 TAAAACTTCG TATTGGTGAA CATTGTATTG GAAAATTCTT GATAATCATT AGACTTTTCG 721 TGAGATTATT GATTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 84780 to 89319): Exon 1 85555 85562 ( 8 n); cDNA 93 100 ( 8 n); score: 0.875 Intron 1 85563 85813 ( 251 n); Pd: 0.000 (s: 0), Pa: 0.988 (s: 0) Exon 2 85814 85819 ( 6 n); cDNA 101 106 ( 6 n); score: 0.833 Intron 2 85820 87071 (1252 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0.85) Exon 3 87072 87632 ( 561 n); cDNA 107 668 ( 562 n); score: 0.881 PPA cDNA 735 746 MATCH C08HBa0197A05.1+ SGN-E546025- 0.881 575 0.771 C PGS_C08HBa0197A05.1+_SGN-E546025- (85555 85562,85814 85819,87072 87632) Alignment (genomic DNA sequence = upper lines): GCTGATGTGT GTTACGCTTA CCAAATAATG AAGGCTGGTG GTCTTCAGGA TGAGAACATC 85614 ||||| || GCTGAAGT.. .......... .......... .......... .......... .......... 100 ACTGTATTCA TGTACAATGA TATTGCTAAC AATACAGAAA ACCCTAGACC TGGTGTCATC 85674 .......... .......... .......... .......... .......... .......... 100 ATCAATAACC TACATGGCCA TGATGTTTAC AAAGGTGTCC CAAAGGTTTG TTATTTTTGT 85734 .......... .......... .......... .......... .......... .......... 100 GTTTAATTTT TTAGAAATTT TTCAAGATTA GAGTTTTTGT TAGCTTATGA GGGGTTTTCT 85794 .......... .......... .......... .......... .......... .......... 100 TTCTCTTTTG TTGAGGCAGG ATTATGTAGG TGAAGATGCT AATGCTAACA ACGTTTACAA 85854 | || || .......... .........G ATCAT..... .......... .......... .......... 106 TGTCATCCTT GCAAACAAAA GTGGTGTTGT TGGAGGAAGT GGGAATGTTT TGAAGAGTGG 85914 .......... .......... .......... .......... .......... .......... 106 CCCATATGAC CATATCTTCA TATACTATAC TGATCATGGT ACCGCTGGAT TTATTAGTAA 85974 .......... .......... .......... .......... .......... .......... 106 GTATCTTCAT TGCATTAATT TGTTTTTTCT TCTGTCCTAA TTTAAGGGTC TTACTTTTCT 86034 .......... .......... .......... .......... .......... .......... 106 TTTTGGTTTG CCGAGTTTCT TTTTATATTT AGCAAGTTTT TCAATTTTGA TATTCCATAT 86094 .......... .......... .......... .......... .......... .......... 106 GCAAGTTTAA CGCCACAAGA TTAGAAACTC TTTAGCTTCA TGACACTTAA ACTGGGACAG 86154 .......... .......... .......... .......... .......... .......... 106 TTGGAGTAAT TATTATCTCA GAAAGTTAGT TTGTTTGTTC ATTGAAAAGA ATTGGAATCA 86214 .......... .......... .......... .......... .......... .......... 106 ACTAGAAATG TGACTTTCTG ACATAATAAA CTTATTAGTT GAGTCACTAT GTAAAAAATG 86274 .......... .......... .......... .......... .......... .......... 106 AGACCCTATT TTGAAGTTGT GAAAATGTAA CATTCTAATA AGAAATTCTT AATCCATATT 86334 .......... .......... .......... .......... .......... .......... 106 TTGTCGCAGT TGTTGTGAAT GTGTATAAGC AATTCATGTT AGGAACTTAC CGTCTAATGA 86394 .......... .......... .......... .......... .......... .......... 106 CATAATTAGG CAATTGGAAA ATTAAGCTAA TACTCGTTAC AAATCAAAGT TTGCAATTTG 86454 .......... .......... .......... .......... .......... .......... 106 TGATACTTTG AAACTGATTA GGATATGCAT AATTTTTTTA TTGTTTTTAT TATTATCAGC 86514 .......... .......... .......... .......... .......... .......... 106 AATGCCAAGT GGAGAATCGA TTTACACAGA TGATCTATTT AAAGTGTTGA AAAAGAAGCA 86574 .......... .......... .......... .......... .......... .......... 106 TGCTTCAGGG ACGTATGACA GTCTAGTAAC TTGCTTGCTT TAGTTTTTTA GGGTTCCTTT 86634 .......... .......... .......... .......... .......... .......... 106 CCCTTTGCGT GAATGCTTTA GGGATGTATA AAGTCTGTGT TTTATGTTGG ATGATGTTCA 86694 .......... .......... .......... .......... .......... .......... 106 GGTGTTTTAC CTAGAAGCCT ATGAGTCTGG AAGCATGTTT TGGCACATAC TGTGGCGATG 86754 .......... .......... .......... .......... .......... .......... 106 GTACTCTTGA TGATCCCTGC TTTGGTCAGT GTCCCCCTAC CGAGTTTAAG GGTGTTTGCT 86814 .......... .......... .......... .......... .......... .......... 106 TGGGAGACTT GTTCAGTGTT TCCTAGATGG AAGATAGGTA TAAATAACTT CTACATCCTC 86874 .......... .......... .......... .......... .......... .......... 106 TGTTCTTGTA GTCCACATTG TTAGGAAGAA GTATGCCAAG TATAGTTTCT TGTATTTTGT 86934 .......... .......... .......... .......... .......... .......... 106 TTCTATAATT TACACTTGGA AATGACGTAT TGATATACCA TGGTTTCACG ATATAATTAA 86994 .......... .......... .......... .......... .......... .......... 106 TACTTTTTTC TTAAGTTTAG TATGTCCGAA AGCCTTTTTT GTGCTAATTT TGATATAAGT 87054 .......... .......... .......... .......... .......... .......... 106 TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA AGCTGATTGC GGAGATTTTG AGCGAA-AAA 87113 ||| || ||||||| ||| | ||| |||||||||| || ||| ||| .......... .......GAA ATTTGTCCAA AGCCAAATGC GGAGATTTTG AGAGAAGAAA 149 TGCAGAAGAA ACCACCTACG GATCTTATGA CGGTCCGTCG TGCATGTGAC GGTCCGTAGG 87173 ||||||||| |||||||| | || || |||| |||||||||| ||| |||||| |||||||||| TGCAGAAGAG ACCACCTATG GAGCTGATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG 209 TGGCAGCGCA GAGAAGCTGC TAAAGGAAGA TGGGGAAGTC TGACCAAGTG TGGTATTACG 87233 |||||| | | |||||| ||| | |||||||| |||||||||| |||||||||| ||| |||||| TGGCAGTGTA GAGAAGTTGC TGAAGGAAGA TGGGGAAGTC TGACCAAGTG TGGGATTACG 269 AAGCTTGTGA CGGTCCGTCA TGGCTATGAC GGTCTTTCCT GCAGGTTCAT CGTGAAGATC 87293 |||||||||| |||||||||| |||||||||| ||||| | || |||||||| | |||| || || AAGCTTGTGA CGGTCCGTCA TGGCTATGAC GGTCTGTTCT GCAGGTTCGT CGTGGAGTTC 329 AGAGAAGTGA TTCCAGTAAC CAGATTCCAA GAGTTGAAGT ATTTTGAAAC G-AGACCCTC 87352 |||||||| | ||||||| | ||||||| | |||||||||| |||||||||| | ||||||| AGAGAAGT-A ATCCAGTACC TAGATTCCGA GAGTTGAAGT ATTTTGAAAC GAAGACCCTT 388 GACGGACCGT TGTGCCTATG ACGGTCCGTC ACACTTGCCG TCGAGGGGAA GGAAGAAAGC 87412 ||| |||||| |||||||||| || ||||||| | |||||||| |||||||||| ||||| ||| GACAGACCGT TGTGCCTATG ACAGTCCGTC ATACTTGCCG TCGAGGGGAA TGAAGAGAGC 448 AGCAGAAGAA ATTGCACCAA GCATGGGACG ACGGAGTCCA CGACGGTCCG TTATGACCAC 87472 |||||||||| | |||| ||| | |||||||| |||||||||| ||||||||| | |||||||| AGCAGAAGAA AGTGCA-CAA GTATGGGACG ACGGAGTCCA TGACGGTCCG TCATGACCAC 507 GACGGTCTGT CGCGTGGTCC GTTGACTCAG CCGCGTTTTG GCAGATTTCC AGTAATTAGA 87532 ||||||| || ||| |||||| || ||| ||| |||||||||| |||||||||| | ||||||| GACGGTCCGT CGCATGGTCC GTCGACCCAG CCGCGTTTTG GCAGATTTCC ACCAATTAGA 567 ATCCTTGTTT AATTAGGTTT TTATTTTTTT ATAAATAGTT CGAAAAACCT CATTTTTGAG 87592 || ||||| | |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ATTCTTGTGT AATTAGGTTT TTATTTTTAT ATAAATAGTT CGAAAAACCT CATTTTTGAG 627 GTTAGAC-TC TGGGAGATAA AACATCATAT TATTAGACTT T 87632 ||||||| | || || || | | | || | ||| | | | GTTAGACACC TGATAGTTAG ACTCTTAGAT TGTTAAAACT T 668 hqPGS_C08HBa0197A05.1+_SGN-E546025- (87072 87632) ******************************************************************************** EST sequence 31 +strand 816 n (File: SGN-E546067+) 1 CGTTGCCTCT CCATTGAGCT TGTCGCCGAC CATTCCATCA CTTACTGTGA AGACCTAGTT 61 TCCGTCGTTG ATTCCTGAGA ACTCCAATTA TCAATTTTGA ACAGTTTCAA TCCAGATGAT 121 GTTGTGGAGA TCATTTCTCA GTCAATCAAA GATCTCTATA GAGATGCTTT TCCTACTTGG 181 GGCAAGATGC CAAGCAATCT CAAGAGACAA ATATTTTTGG AGTTTAGAAA CAATGTGCTT 241 GGCATCTGGA ACATGAGGCC AAAATTTGTG CAAACTTTCA CAAGAAAGTT ACGCGTGTTC 301 TTGCTAGTTT GTTGAATAAA GCTCGTAAAA ATGATCAAAA ACCTAAGTGG ATTCTATAGG 361 ATGATTGGAA AAAATTACTT GTGCATTGGG AAAATGATTC AAGATTTAAG CAGATGAGCG 421 AGATCGGTGT GAAGGCTAGA TCATCTATTA AGGGTGGTTC TCTACACCAA GTGGGGCTCA 481 AAGTCAAGGA AGTGTGAGGA GGAAATTGGA AAAGGAACTA GGAAGACCAG TAACTCAAGC 541 TGAGGCATTC AAGGCAACAC ACATAAGAAA GAAGAAAAAT ACCGAAGATC CAGACGTGTG 601 GATTGAGCCG CGAGCTGAAG TGATCATGAA ATTTGTCCAA AGCCAAATGC GGAGATTTTG 661 AGAGAAGAAA TGCAGAAGAG ACCACCTATG GAGCTGATGA CGGTCCGTCG TGCTTGTGAC 721 GGTCCGTAGG TGGCAGTGTA GAGAAGTTGC TGAAAGAAGA TGGGGGAGTC TGACCAAGTG 781 TGGGATTACG AAGCTTGTGA CGGTCCGTCA TGGCTA Predicted gene structure (within gDNA segment 79580 to 87869): Exon 1 81092 81102 ( 11 n); cDNA 549 559 ( 11 n); score: 0.818 Intron 1 81103 83227 (2125 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 83228 83247 ( 20 n); cDNA 560 578 ( 19 n); score: 0.750 Intron 2 83248 84410 (1163 n); Pd: 0.432 (s: 0), Pa: 0.998 (s: 0) Exon 3 84411 84447 ( 37 n); cDNA 579 613 ( 35 n); score: 0.541 Intron 3 84448 85554 (1107 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 4 85555 85562 ( 8 n); cDNA 614 621 ( 8 n); score: 0.875 Intron 4 85563 85813 ( 251 n); Pd: 0.000 (s: 0), Pa: 0.988 (s: 0) Exon 5 85814 85819 ( 6 n); cDNA 622 627 ( 6 n); score: 0.833 Intron 5 85820 87071 (1252 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0.85) Exon 6 87072 87259 ( 188 n); cDNA 628 816 ( 189 n); score: 0.896 MATCH C08HBa0197A05.1+ SGN-E546067+ 0.896 270 0.331 C PGS_C08HBa0197A05.1+_SGN-E546067+ (81092 81102,83228 83247,84411 84447,85555 85562,85814 85819,87072 87259) Alignment (genomic DNA sequence = upper lines): TCAAGGGACC AGGTCCATTG TCTGATAGTG GACGCACACA TTCTATTAAC TGGTATCAGA 81151 |||||| | | | TCAAGGCAAC A......... .......... .......... .......... .......... 559 GCGGTTGCTC TCTAGTTGGT TAACACCAAG GAGAGAAACC TGGAAAGATG ATTGCTCCAC 81211 .......... .......... .......... .......... .......... .......... 559 TAAATAAAAA TAAAGAAGTG TCAACGAAGG AGTTAAAGAA ACATAAATCT CTAGTTCTCA 81271 .......... .......... .......... .......... .......... .......... 559 AGGTGACATC TGAAGAAACT TTTGATGAAG ATGAGGACAT GACATACCTA ACGAGAAGGT 81331 .......... .......... .......... .......... .......... .......... 559 TTCAAAAAAA TGAGGAAACA AAGAGGTTTA TGAAAGGCAT GAAACTCAAA CCAATCTGCA 81391 .......... .......... .......... .......... .......... .......... 559 AATGCAAACT ACCTACACTA TAAATGTAGA AAGCTAGGGC ATTTAATCAG AGATTTCTCC 81451 .......... .......... .......... .......... .......... .......... 559 ATGCATGAAA TTGAAGCCAA AGAGTATCAA ATACCTAGAG GAGAGATAGA TAGAAAAGAG 81511 .......... .......... .......... .......... .......... .......... 559 TACCCGGTCC CCGATAAGAA AGCAAGAAAA TTTGTAGCTG TCTATGTTGT GAAGAAAGCT 81571 .......... .......... .......... .......... .......... .......... 559 TCTGCCGTCT AGGGAGACTC CAAGTGAGTC AGATAGCCTT CAAAGATGAT AATAATGTGT 81631 .......... .......... .......... .......... .......... .......... 559 TTGATGGCAT GTTCGCATTC ATGGAAAAAT ATGACGACGA GGAAGATGAA GAAAAGGTAA 81691 .......... .......... .......... .......... .......... .......... 559 CTCTCTTTGA CCTTAAACAA AACTTGAATG CTTACTCTAT TAGGAAGTTC TGAAATCTAG 81751 .......... .......... .......... .......... .......... .......... 559 TTGTTGTTCT GATTGACTCT CTTATAGAGT TAACTATTGA AAAAGACTCT ATGAACAACA 81811 .......... .......... .......... .......... .......... .......... 559 GTCTAGACAA TTTCAATAAA GAGAAATTAG CCTTGACTGA TCATGCATCC ATTATCGAGG 81871 .......... .......... .......... .......... .......... .......... 559 AACAATTAAT TGTTCTAGAG ACTAAAAATC TAGAAATCAA AGAGAAATTG AAGATGTTGA 81931 .......... .......... .......... .......... .......... .......... 559 GTGAGAAATG TGGCTGGGTC ACCACAATAG GACGGGTATA GGAAGTTCAA ACATCAGTCC 81991 .......... .......... .......... .......... .......... .......... 559 TCCATATAAT CCTCACAGTA AGTATATGTA TGAATATAAC AATTTATTGT GCCTTCATTG 82051 .......... .......... .......... .......... .......... .......... 559 TGGACGCAAT GGTTATATGA AGAAGGATTG TCCAACCTTT AGAAGGTCTC AAGAAAACCT 82111 .......... .......... .......... .......... .......... .......... 559 TTCTTCGTAC ACTAGATAGA AAGTTGTACA GAAAAAGGGG ACCTACTCCT ACTGCCAGAA 82171 .......... .......... .......... .......... .......... .......... 559 CTCCCAAAAT AAGAAAGAAT TTTCTTCCTC ATTGGTCAAA AAGTTCACTT ATCATGCCTT 82231 .......... .......... .......... .......... .......... .......... 559 ATCTGTTTAG TGGGGACTTA GACTGAAATG GTATATATGT GAGATGAAGT AACATCAGGT 82291 .......... .......... .......... .......... .......... .......... 559 ATATATGTGA GAGGAAGTAA CATTAGTCAA TGTTGATTCA TGAATGGCGG ATGCTCAAAG 82351 .......... .......... .......... .......... .......... .......... 559 CACGTGATTG ATAAACTGAA ACTTCGTCTC TCTCTCTCTC TCAAGTCACT TCAAGGTGGA 82411 .......... .......... .......... .......... .......... .......... 559 GGTGTCTATT TTAATTTGGT AGGGGCAAGA AATAGTACTT GTTTTTGTGA AGGAAGGACT 82471 .......... .......... .......... .......... .......... .......... 559 TGAAATTGTG TGATAACCGT AACAAAGTCA AGTTCCTATC AGATAAATGT GTGTTCACAA 82531 .......... .......... .......... .......... .......... .......... 559 CTTGATCTCT TAGATGATAA TGTTTACAAA AAGGAGGTCC AAGAACATGT ATTGATGATC 82591 .......... .......... .......... .......... .......... .......... 559 TCAACACAGC TAGTTATAAG ATTGTCACTT CCTTTGATGC TTAAGGTGAG AATACGATTT 82651 .......... .......... .......... .......... .......... .......... 559 TTTGAGGCAT GATTCTTGGC CAATTAAGCT CTTTTCTCCA AACAAACTTG TGACAAGGGA 82711 .......... .......... .......... .......... .......... .......... 559 CCTAGTCCAC TGTCTACTCA AAATAATATT TGCAAACGAC AAAGTTAGTG ATGCTTGTGT 82771 .......... .......... .......... .......... .......... .......... 559 TTAAGAGAAG CATATTTTAA TCTTCCAAAA AACTTTTGGC TAAAGTGGTG AAAACTATAT 82831 .......... .......... .......... .......... .......... .......... 559 GTCCTGTGAC CAATAGGGTG ATATTAGGAA GTTTGATTTC AATGGTGATG AAAGAATTTG 82891 .......... .......... .......... .......... .......... .......... 559 TGAGATACAT TTTGTGTAAC AAGGCTTATC ATGTTCCTAA AAACAAGAAT AGTTTATTAA 82951 .......... .......... .......... .......... .......... .......... 559 CAAAAGGTGT TCATGTGATC TTCTGATGAG TTAAAACCAA TTGAGAATGT GCAAAACAAG 83011 .......... .......... .......... .......... .......... .......... 559 AAGTTTCTGA TATGGAAGAA TTACTTTTCA GAGAGATGGG CTAAACAGTG AGCTTGTTGA 83071 .......... .......... .......... .......... .......... .......... 559 AGAACATCAT TTTCATGAAT CCAGCAATCT TAAGGAAGTT GATACAGATG ATGAACCTAA 83131 .......... .......... .......... .......... .......... .......... 559 TGAGGGACCC AGTCTTGCAG ACAAGGCTGA ACAAAGATGA TGCAATTCAA AGTGATAATG 83191 .......... .......... .......... .......... .......... .......... 559 TGATTTGTGA AGGTGAGAAT GCACAAGTTG ATCAAGCTCA GTTTGAAAGA AGCAAAGTAT 83251 | || | |||||| || ||| .......... .......... .......... ......CACA -TAAGAAAGA AGAAAA.... 578 GCTACTCGGT TCCCGACAAG CTGACAAATT GCTAGAGTTC TTCTTCAATG ATGGTTTCAA 83311 .......... .......... .......... .......... .......... .......... 578 AAGAAAAAAA ATAAAAAAAA ATCCTCTTCT TTTTAACACA AGGAAATGAC TTGTTTATTA 83371 .......... .......... .......... .......... .......... .......... 578 TCCAAGTACA CATCGATGAT ATCATCTTTG AAGCAACTTC TGAAGTGTGT TGGGTAAAGA 83431 .......... .......... .......... .......... .......... .......... 578 GTCTTTTGGA CTCATGATTA TTGAGTTGTG AAGTGACCAT TATGGAAGAA TTGATTTTTT 83491 .......... .......... .......... .......... .......... .......... 578 TCTCGGAGTT GTAAATCAAG CAAACTTCTA AACTTTGCTA TATGGAAGAT CAAACTGCTG 83551 .......... .......... .......... .......... .......... .......... 578 ACATTTTCAT TTAAGTTCTA AGCAAGGAAC AATTTTTCAA GAATAGGGAC CTAATTCCAA 83611 .......... .......... .......... .......... .......... .......... 578 CTCAGAGAAG CTATTGAAGA GGTTTCATAT TATGGAAGCC AAGTCAACTG ATATTCCCAT 83671 .......... .......... .......... .......... .......... .......... 578 AGAGACCAAC TCGATGCTAG ATTCTGATAG ATATGTTCCA GATATAACTG ATGCAAGTGT 83731 .......... .......... .......... .......... .......... .......... 578 TAAGATTTAT GCAAGATTCC ATGGTTGTCC AATGGAATCA GATTTGACTG TTGCTCAAAG 83791 .......... .......... .......... .......... .......... .......... 578 AATCATGAGA CATTTGAAGA AGACAGGGAC TTGGTTCTAT TCTATCCATC AGGAGATGTT 83851 .......... .......... .......... .......... .......... .......... 578 TTGACTTGGA GGAATATGGT GATGTAGAGT CTGTTGGGTA TCACGCTGAT AGAAAGAGAA 83911 .......... .......... .......... .......... .......... .......... 578 GGATTGACTC ATTTTCTGGG CTCATATCTC CTTAATGAGA TATAAAAGAC AACATTTTAT 83971 .......... .......... .......... .......... .......... .......... 578 TGTTCTTTCA AAAACTAAGG CAAGGTATGT AACAGATGCA GGCTGGTGTG CTCAACTCCC 84031 .......... .......... .......... .......... .......... .......... 578 GTGGATCAAA CAACAATGTG AAGTTCTTAG AGTGGTTTCT CTGGCTACCC ATCTCTTATG 84091 .......... .......... .......... .......... .......... .......... 578 TTCTATCACG AGTTCTCTCA CTATGGCTAA GAACTCAATC CACCATAACA GGATAAGCAT 84151 .......... .......... .......... .......... .......... .......... 578 ATTGATGTGA TACATCACTT TCTAAGGGAT CATTTTCAGA AAGGAGATAT CAGTAAGATC 84211 .......... .......... .......... .......... .......... .......... 578 AAAGAATTAA TCGTTGGTAT CTTAACAAAA TCTCTGATAA GGGACCTGGT CAAGATAAAT 84271 .......... .......... .......... .......... .......... .......... 578 AAATTGAAGG TGAGGATGCT GAAACTGAAC TGGATGGATC ATGCCTGAAG AAATCAACCA 84331 .......... .......... .......... .......... .......... .......... 578 TCTCATGACT ATGCAAAGGG AGTATCATTG TTTTTCATTT ATGTATGTTT TAGCAAATTT 84391 .......... .......... .......... .......... .......... .......... 578 AGTGTCATAC CTTTTATAGA TATACACACA TGGTAGACTT GCTGAAGGAA AAGGGAGGTC 84451 | || | | | | |||| | | || || | || .......... .........A TA-CCGAAGA T-CCAGACGT GTGGATTGAG CCGCGA.... 613 AGGACAGATA TAGACAATCA CATTCAACCT ACAGAAAGGG ACCTGGTACG TTCTCAAAGA 84511 .......... .......... .......... .......... .......... .......... 613 GAGTCGTTGG CATCCTGGGT TGCCATTTTA GGAGACAGTG CTTCCACCCA TCTAGAATAT 84571 .......... .......... .......... .......... .......... .......... 613 ATACAAGCCT CCTCAAATGT AGAAGGTTCC ACATCAGTAC CAAAGAGTGA AACAGATGCT 84631 .......... .......... .......... .......... .......... .......... 613 TGATAGGAAG GTCTCAAGTG ATCATACGCA AGAGAATGGT CAACGAAATA GACTGTCTTG 84691 .......... .......... .......... .......... .......... .......... 613 GAGTCATGGT TGAGCTTACC AGAAGCTCCA TAGTTCTTCA TCCATAAAAG TTCTTAGATG 84751 .......... .......... .......... .......... .......... .......... 613 CACCTATAAG ACCTTCTTTG ATCAAGAATA CTTGGGGAAG TAGTGGGATC AGGCTCAACA 84811 .......... .......... .......... .......... .......... .......... 613 TGAACTACTA GATCAATAAG AGCAAAAGTT AGGAGTAATG CGCAGGATCA TTGTCTGAGT 84871 .......... .......... .......... .......... .......... .......... 613 AAAAATTGGT GGAAGCTGGA AAAACAAAGA GAAACACAGA TTCTCTTAGA CATACCATAC 84931 .......... .......... .......... .......... .......... .......... 613 CTACGGAGGA CCATTTGTTT GTCTTTGAAA TTATATAAAA TATATTGATC AATGTGTTCA 84991 .......... .......... .......... .......... .......... .......... 613 CTATATCCCA GGTATATGGG CAACTATACC TGTAGGCTGA AATTTGTCAT GAATATGCAT 85051 .......... .......... .......... .......... .......... .......... 613 ATCGAACCAC AAAACAAAAT CAAGAAATTC ACAAAAATCT AAAGTTAAAA AATCTGATAC 85111 .......... .......... .......... .......... .......... .......... 613 TATGGTTTTA CTTAAAATTT TAATTCTTAT TTATTAGATA ATATAAAATT ACCACCAACT 85171 .......... .......... .......... .......... .......... .......... 613 TATTGTCTAA AATCACGTTA TTATACAATA GTTTTTATTT AATAGACATA CATTGAATGA 85231 .......... .......... .......... .......... .......... .......... 613 AGTCAAAGAG AGTAGTATAG ATATACATTG AATGAAGTTG ACAGATTAGT AAAGTCCAAG 85291 .......... .......... .......... .......... .......... .......... 613 CACGTGTTAA GTACCTAGCA ATTCTCGCCC CAAAAAACAA ACAAACAAGA AATACATTTT 85351 .......... .......... .......... .......... .......... .......... 613 AATCAAAATA AATAGGAGAA ATAAGAACTA TATACAAATG AAAACAATAT AACTTTAAAA 85411 .......... .......... .......... .......... .......... .......... 613 TACTCTTTTA TAGTTGATAA ATTATTTATA GTCAAGAGTG ATAAAAATTA ACAAATTTTA 85471 .......... .......... .......... .......... .......... .......... 613 AGAATTTTTC TTTTTGTTTT GAATTTTGTT GCAATTCATC ATAGCTACAA AGTTGTGAAT 85531 .......... .......... .......... .......... .......... .......... 613 GTAACTTGAT TGTATGATTT CAGGCTGATG TGTGTTACGC TTACCAAATA ATGAAGGCTG 85591 ||||| | | .......... .......... ...GCTGAAG T......... .......... .......... 621 GTGGTCTTCA GGATGAGAAC ATCACTGTAT TCATGTACAA TGATATTGCT AACAATACAG 85651 .......... .......... .......... .......... .......... .......... 621 AAAACCCTAG ACCTGGTGTC ATCATCAATA ACCTACATGG CCATGATGTT TACAAAGGTG 85711 .......... .......... .......... .......... .......... .......... 621 TCCCAAAGGT TTGTTATTTT TGTGTTTAAT TTTTTAGAAA TTTTTCAAGA TTAGAGTTTT 85771 .......... .......... .......... .......... .......... .......... 621 TGTTAGCTTA TGAGGGGTTT TCTTTCTCTT TTGTTGAGGC AGGATTATGT AGGTGAAGAT 85831 ||| || .......... .......... .......... .......... ..GATCAT.. .......... 627 GCTAATGCTA ACAACGTTTA CAATGTCATC CTTGCAAACA AAAGTGGTGT TGTTGGAGGA 85891 .......... .......... .......... .......... .......... .......... 627 AGTGGGAATG TTTTGAAGAG TGGCCCATAT GACCATATCT TCATATACTA TACTGATCAT 85951 .......... .......... .......... .......... .......... .......... 627 GGTACCGCTG GATTTATTAG TAAGTATCTT CATTGCATTA ATTTGTTTTT TCTTCTGTCC 86011 .......... .......... .......... .......... .......... .......... 627 TAATTTAAGG GTCTTACTTT TCTTTTTGGT TTGCCGAGTT TCTTTTTATA TTTAGCAAGT 86071 .......... .......... .......... .......... .......... .......... 627 TTTTCAATTT TGATATTCCA TATGCAAGTT TAACGCCACA AGATTAGAAA CTCTTTAGCT 86131 .......... .......... .......... .......... .......... .......... 627 TCATGACACT TAAACTGGGA CAGTTGGAGT AATTATTATC TCAGAAAGTT AGTTTGTTTG 86191 .......... .......... .......... .......... .......... .......... 627 TTCATTGAAA AGAATTGGAA TCAACTAGAA ATGTGACTTT CTGACATAAT AAACTTATTA 86251 .......... .......... .......... .......... .......... .......... 627 GTTGAGTCAC TATGTAAAAA ATGAGACCCT ATTTTGAAGT TGTGAAAATG TAACATTCTA 86311 .......... .......... .......... .......... .......... .......... 627 ATAAGAAATT CTTAATCCAT ATTTTGTCGC AGTTGTTGTG AATGTGTATA AGCAATTCAT 86371 .......... .......... .......... .......... .......... .......... 627 GTTAGGAACT TACCGTCTAA TGACATAATT AGGCAATTGG AAAATTAAGC TAATACTCGT 86431 .......... .......... .......... .......... .......... .......... 627 TACAAATCAA AGTTTGCAAT TTGTGATACT TTGAAACTGA TTAGGATATG CATAATTTTT 86491 .......... .......... .......... .......... .......... .......... 627 TTATTGTTTT TATTATTATC AGCAATGCCA AGTGGAGAAT CGATTTACAC AGATGATCTA 86551 .......... .......... .......... .......... .......... .......... 627 TTTAAAGTGT TGAAAAAGAA GCATGCTTCA GGGACGTATG ACAGTCTAGT AACTTGCTTG 86611 .......... .......... .......... .......... .......... .......... 627 CTTTAGTTTT TTAGGGTTCC TTTCCCTTTG CGTGAATGCT TTAGGGATGT ATAAAGTCTG 86671 .......... .......... .......... .......... .......... .......... 627 TGTTTTATGT TGGATGATGT TCAGGTGTTT TACCTAGAAG CCTATGAGTC TGGAAGCATG 86731 .......... .......... .......... .......... .......... .......... 627 TTTTGGCACA TACTGTGGCG ATGGTACTCT TGATGATCCC TGCTTTGGTC AGTGTCCCCC 86791 .......... .......... .......... .......... .......... .......... 627 TACCGAGTTT AAGGGTGTTT GCTTGGGAGA CTTGTTCAGT GTTTCCTAGA TGGAAGATAG 86851 .......... .......... .......... .......... .......... .......... 627 GTATAAATAA CTTCTACATC CTCTGTTCTT GTAGTCCACA TTGTTAGGAA GAAGTATGCC 86911 .......... .......... .......... .......... .......... .......... 627 AAGTATAGTT TCTTGTATTT TGTTTCTATA ATTTACACTT GGAAATGACG TATTGATATA 86971 .......... .......... .......... .......... .......... .......... 627 CCATGGTTTC ACGATATAAT TAATACTTTT TTCTTAAGTT TAGTATGTCC GAAAGCCTTT 87031 .......... .......... .......... .......... .......... .......... 627 TTTGTGCTAA TTTTGATATA AGTTTCTCTT TGTTTTGCAG GAAATCTGTC CAAAGCTGAT 87091 ||||| |||| |||||| | .......... .......... .......... .......... GAAATTTGTC CAAAGCCAAA 647 TGCGGAGATT TTGAGCGAA- AAATGCAGAA GAAACCACCT ACGGATCTTA TGACGGTCCG 87150 |||||||||| ||||| ||| |||||||||| || ||||||| | ||| || | |||||||||| TGCGGAGATT TTGAGAGAAG AAATGCAGAA GAGACCACCT ATGGAGCTGA TGACGGTCCG 707 TCGTGCATGT GACGGTCCGT AGGTGGCAGC GCAGAGAAGC TGCTAAAGGA AGATGGGGAA 87210 |||||| ||| |||||||||| ||||||||| | ||||||| |||| || || |||||||| | TCGTGCTTGT GACGGTCCGT AGGTGGCAGT GTAGAGAAGT TGCTGAAAGA AGATGGGGGA 767 GTCTGACCAA GTGTGGTATT ACGAAGCTTG TGACGGTCCG TCATGGCTA 87259 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GTCTGACCAA GTGTGGGATT ACGAAGCTTG TGACGGTCCG TCATGGCTA 816 hqPGS_C08HBa0197A05.1+_SGN-E546067+ (87072 87259) ******************************************************************************** EST sequence 53 -strand 574 n (File: SGN-E550629-) 1 GGAACGAAGA CCCTCGACGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 85280 to 88585): Exon 1 87339 87895 ( 557 n); cDNA 2 574 ( 573 n); score: 0.767 MATCH C08HBa0197A05.1+ SGN-E550629- 0.767 557 0.970 C PGS_C08HBa0197A05.1+_SGN-E550629- (87339 87895) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGACGGA CCGTTGTGCC TATGACGGTC CGTCACACTT GCCGTCGAGG 87398 ||| |||| |||||||||| |||||||||| || ||||||| ||||| || | |||||||||| GAACGAAGAC CCTCGACGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GGAAGGAAGA AAGCAGCAGA AGAAATTGCA CCAAGCATGG GACGACGGAG TCCACGACGG 87458 | || ||||| ||||||| | |||||||||| ||| |||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA T-AAGTATGG GACAACGGAG TCCATGACGG 120 TCCGTTATGA CCACGACGGT CTGTCGCGTG GTCCGTTGAC TCAGCCGCGT TTTGGCAGAT 87518 || || ||| |||||||| | | |||| | | |||||| ||| ||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT GTTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCGAAAA 87578 |||||| || || | ||||| |||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCATTTT TGAGGTTAGA CTCTGG--GA -GATAAAACA TCATATTATT AGAC-T--T- 87631 || ||||||| |||||| ||| |||||| | | | || | |||| || |||| | | ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 T--G----TG TTTGAGTGTT TGA-TTTTTA -GA-GATT-C TTACAAGTGA TTTTTGGTGA 87681 | | ||| | |||| || |||| | | ||| || |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AATTTTTCGA ACTTTACTCT TTCTCATTGA AGTAAGTACA TAAATTCTTA 87741 | ||||||| || | || | |||||||| ||||| |||| | |||||||| | |||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTAATATAT TTGAATATTT TGTTTATGGC TATGAGGAAC TAAACTCCAT AACTAGGGTT 87801 | | |||||| ||||||||| || ||||| | |||| ||| |||||||||| ||||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACC- TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATAGT 87860 ||||||||| |||| |||| |||| |||| |||| |||| |||||||||| |||||||||| GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 87895 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C08HBa0197A05.1+_SGN-E550629- (87339 87895) ******************************************************************************** EST sequence 54 -strand 574 n (File: SGN-E550645-) 1 GGAACGAAGA CCCTCGTCGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 85280 to 88585): Exon 1 87339 87895 ( 557 n); cDNA 2 574 ( 573 n); score: 0.765 MATCH C08HBa0197A05.1+ SGN-E550645- 0.765 557 0.970 C PGS_C08HBa0197A05.1+_SGN-E550645- (87339 87895) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGACGGA CCGTTGTGCC TATGACGGTC CGTCACACTT GCCGTCGAGG 87398 ||| |||| ||||| |||| |||||||||| || ||||||| ||||| || | |||||||||| GAACGAAGAC CCTCGTCGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GGAAGGAAGA AAGCAGCAGA AGAAATTGCA CCAAGCATGG GACGACGGAG TCCACGACGG 87458 | || ||||| ||||||| | |||||||||| ||| |||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA -TAAGTATGG GACAACGGAG TCCATGACGG 120 TCCGTTATGA CCACGACGGT CTGTCGCGTG GTCCGTTGAC TCAGCCGCGT TTTGGCAGAT 87518 || || ||| |||||||| | | |||| | | |||||| ||| ||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT GTTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCGAAAA 87578 |||||| || || | ||||| |||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCATTTT TGAGGTTAGA CTCTGG--GA -GATAAAACA TCATATTATT AGAC-T--T- 87631 || ||||||| |||||| ||| |||||| | | | || | |||| || |||| | | ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 T--G----TG TTTGAGTGTT TGA-TTTTTA -GA-GATT-C TTACAAGTGA TTTTTGGTGA 87681 | | ||| | |||| || |||| | | ||| || |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AATTTTTCGA ACTTTACTCT TTCTCATTGA AGTAAGTACA TAAATTCTTA 87741 | ||||||| || | || | |||||||| ||||| |||| | |||||||| | |||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTAATATAT TTGAATATTT TGTTTATGGC TATGAGGAAC TAAACTCCAT AACTAGGGTT 87801 | | |||||| ||||||||| || ||||| | |||| ||| |||||||||| ||||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACC- TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATAGT 87860 ||||||||| |||| |||| |||| |||| |||| |||| |||||||||| |||||||||| GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 87895 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C08HBa0197A05.1+_SGN-E550645- (87339 87895) ******************************************************************************** EST sequence 30 +strand 384 n (File: SGN-E357596+) 1 AAATTGCACA AGTATAGGAC GACGGAGTCC ATGACGGTCC GTAGTGACCA CGACGGTCCG 61 TCGCGAGGTC CGTCGACCCA ACCGCATTTT GCAGATTTCC AGCAATTAAA ATCCTTGTTT 121 AATTAGGTTT TTGTTTTTTA TAAATAGTTC GAAAAAACCT TGTTTTTGAG GTTAGACTCT 181 GAGATTGTTA GAGTCTGAGA TTGTTAGACT CTTAGATTGT TGGACTCTGT TAGGTTAGAC 241 TCTATTATAT TAGACATCAT ATTCTAAGAC TTTGTGTATT AGTGTTGGAT TTTGAGATTC 301 TTGCAAGTGA TTTTTGGAGA TTAATCAAGA AAACTTTTGG ATTTTAAAAA AAAAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 85842 to 90243): Exon 1 87421 87630 ( 210 n); cDNA 1 210 ( 210 n); score: 0.831 PPA cDNA 346 384 MATCH C08HBa0197A05.1+ SGN-E357596+ 0.831 210 0.547 C PGS_C08HBa0197A05.1+_SGN-E357596+ (87421 87630) Alignment (genomic DNA sequence = upper lines): AAATTGCACC AAGCATGGGA CGACGGAGTC CACGACGGTC CGTTATGACC ACGACGGTCT 87480 |||||||| | ||| || ||| |||||||||| || ||||||| ||| ||||| ||||||||| AAATTGCA-C AAGTATAGGA CGACGGAGTC CATGACGGTC CGTAGTGACC ACGACGGTCC 59 GTCGCGTGGT CCGTTGACTC AGCCGCGTTT TGGCAGATTT CCAGTAATTA GAATCCTTGT 87540 |||||| ||| |||| ||| | | |||| ||| | |||||||| |||| ||||| ||||||||| GTCGCGAGGT CCGTCGACCC AACCGCATTT T-GCAGATTT CCAGCAATTA AAATCCTTGT 118 TTAATTAGGT TTTTATTTTT TTATAAATAG TTCG-AAAAA CCTCATTTTT GAGGTTAGAC 87599 |||||||||| |||| |||| |||||||||| |||| ||||| ||| ||||| |||||||||| TTAATTAGGT TTTT-GTTTT TTATAAATAG TTCGAAAAAA CCTTGTTTTT GAGGTTAGAC 177 TCTGGGA--G ATAAAACATC ATATTATTAG ACT 87630 |||| || | || | | | ||| |||| ||| TCTGAGATTG TTAGAGTCTG AGATTGTTAG ACT 210 hqPGS_C08HBa0197A05.1+_SGN-E357596+ (87421 87630) ******************************************************************************** EST sequence 20 +strand 564 n (File: SGN-E205253+) 1 TCGTGCCGAA TTCGGCACGA GCACTGAGTT AAAAAGCAGC TGAAAAAAAT TAAAAATTCT 61 AAGTGTGAAA CGATGGGAGG CCTCGACGGT TCATCGGTAT GGTCATCGAC TAACATGCGT 121 TTTTGGGCAG ATTTTCCTTA AATAGATTTC CTTTTTATGT TAGGATTTCT TTATTATAAA 181 TACTTGTAAA AACCTTGTTT TTGGGGTTAG ACTCTTGGTT ATTTTTTTGA TTTATAATAT 241 TGGTTGTTGA ATATTGGGTT TTCAAAAATA TTTCATTTTT TTGGATTTAT TTATTGCAGT 301 ATTTTCTTAA ATTCAAGTGA TCTTATAGAT TTTCTTCAAT GTCATCAAAG CAAGTACATT 361 AATTCTTGTC TAATCAATAT GAATTGTGTA ATTATGAACA TTGGTAACTA AATCTATAAC 421 TAGGGTTGTG GGAACCATGG TTAAATAACA AGGTAAAAAC TATCTAAAAT AACAATTCTA 481 CAATAGTGTC TTGCATGTTT TGATAATTAT TTCGTATAGA AGTCTTTTTA ACAAGTGCAC 541 GCGTTAGAAT TGGATTTTTG CTAC Predicted gene structure (within gDNA segment 82607 to 88835): Exon 1 83992 84008 ( 17 n); cDNA 314 330 ( 17 n); score: 0.706 Intron 1 84009 87703 (3695 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 87704 87939 ( 236 n); cDNA 331 564 ( 234 n); score: 0.752 MATCH C08HBa0197A05.1+ SGN-E205253+ 0.752 253 0.449 C PGS_C08HBa0197A05.1+_SGN-E205253+ (83992 84008,87704 87939) Alignment (genomic DNA sequence = upper lines): CAAGGTATGT AACAGATGCA GGCTGGTGTG CTCAACTCCC GTGGATCAAA CAACAATGTG 84051 |||| || | | |||| CAAGTGATCT TATAGAT... .......... .......... .......... .......... 330 AAGTTCTTAG AGTGGTTTCT CTGGCTACCC ATCTCTTATG TTCTATCACG AGTTCTCTCA 84111 .......... .......... .......... .......... .......... .......... 330 CTATGGCTAA GAACTCAATC CACCATAACA GGATAAGCAT ATTGATGTGA TACATCACTT 84171 .......... .......... .......... .......... .......... .......... 330 TCTAAGGGAT CATTTTCAGA AAGGAGATAT CAGTAAGATC AAAGAATTAA TCGTTGGTAT 84231 .......... .......... .......... .......... .......... .......... 330 CTTAACAAAA TCTCTGATAA GGGACCTGGT CAAGATAAAT AAATTGAAGG TGAGGATGCT 84291 .......... .......... .......... .......... .......... .......... 330 GAAACTGAAC TGGATGGATC ATGCCTGAAG AAATCAACCA TCTCATGACT ATGCAAAGGG 84351 .......... .......... .......... .......... .......... .......... 330 AGTATCATTG TTTTTCATTT ATGTATGTTT TAGCAAATTT AGTGTCATAC CTTTTATAGA 84411 .......... .......... .......... .......... .......... .......... 330 TATACACACA TGGTAGACTT GCTGAAGGAA AAGGGAGGTC AGGACAGATA TAGACAATCA 84471 .......... .......... .......... .......... .......... .......... 330 CATTCAACCT ACAGAAAGGG ACCTGGTACG TTCTCAAAGA GAGTCGTTGG CATCCTGGGT 84531 .......... .......... .......... .......... .......... .......... 330 TGCCATTTTA GGAGACAGTG CTTCCACCCA TCTAGAATAT ATACAAGCCT CCTCAAATGT 84591 .......... .......... .......... .......... .......... .......... 330 AGAAGGTTCC ACATCAGTAC CAAAGAGTGA AACAGATGCT TGATAGGAAG GTCTCAAGTG 84651 .......... .......... .......... .......... .......... .......... 330 ATCATACGCA AGAGAATGGT CAACGAAATA GACTGTCTTG GAGTCATGGT TGAGCTTACC 84711 .......... .......... .......... .......... .......... .......... 330 AGAAGCTCCA TAGTTCTTCA TCCATAAAAG TTCTTAGATG CACCTATAAG ACCTTCTTTG 84771 .......... .......... .......... .......... .......... .......... 330 ATCAAGAATA CTTGGGGAAG TAGTGGGATC AGGCTCAACA TGAACTACTA GATCAATAAG 84831 .......... .......... .......... .......... .......... .......... 330 AGCAAAAGTT AGGAGTAATG CGCAGGATCA TTGTCTGAGT AAAAATTGGT GGAAGCTGGA 84891 .......... .......... .......... .......... .......... .......... 330 AAAACAAAGA GAAACACAGA TTCTCTTAGA CATACCATAC CTACGGAGGA CCATTTGTTT 84951 .......... .......... .......... .......... .......... .......... 330 GTCTTTGAAA TTATATAAAA TATATTGATC AATGTGTTCA CTATATCCCA GGTATATGGG 85011 .......... .......... .......... .......... .......... .......... 330 CAACTATACC TGTAGGCTGA AATTTGTCAT GAATATGCAT ATCGAACCAC AAAACAAAAT 85071 .......... .......... .......... .......... .......... .......... 330 CAAGAAATTC ACAAAAATCT AAAGTTAAAA AATCTGATAC TATGGTTTTA CTTAAAATTT 85131 .......... .......... .......... .......... .......... .......... 330 TAATTCTTAT TTATTAGATA ATATAAAATT ACCACCAACT TATTGTCTAA AATCACGTTA 85191 .......... .......... .......... .......... .......... .......... 330 TTATACAATA GTTTTTATTT AATAGACATA CATTGAATGA AGTCAAAGAG AGTAGTATAG 85251 .......... .......... .......... .......... .......... .......... 330 ATATACATTG AATGAAGTTG ACAGATTAGT AAAGTCCAAG CACGTGTTAA GTACCTAGCA 85311 .......... .......... .......... .......... .......... .......... 330 ATTCTCGCCC CAAAAAACAA ACAAACAAGA AATACATTTT AATCAAAATA AATAGGAGAA 85371 .......... .......... .......... .......... .......... .......... 330 ATAAGAACTA TATACAAATG AAAACAATAT AACTTTAAAA TACTCTTTTA TAGTTGATAA 85431 .......... .......... .......... .......... .......... .......... 330 ATTATTTATA GTCAAGAGTG ATAAAAATTA ACAAATTTTA AGAATTTTTC TTTTTGTTTT 85491 .......... .......... .......... .......... .......... .......... 330 GAATTTTGTT GCAATTCATC ATAGCTACAA AGTTGTGAAT GTAACTTGAT TGTATGATTT 85551 .......... .......... .......... .......... .......... .......... 330 CAGGCTGATG TGTGTTACGC TTACCAAATA ATGAAGGCTG GTGGTCTTCA GGATGAGAAC 85611 .......... .......... .......... .......... .......... .......... 330 ATCACTGTAT TCATGTACAA TGATATTGCT AACAATACAG AAAACCCTAG ACCTGGTGTC 85671 .......... .......... .......... .......... .......... .......... 330 ATCATCAATA ACCTACATGG CCATGATGTT TACAAAGGTG TCCCAAAGGT TTGTTATTTT 85731 .......... .......... .......... .......... .......... .......... 330 TGTGTTTAAT TTTTTAGAAA TTTTTCAAGA TTAGAGTTTT TGTTAGCTTA TGAGGGGTTT 85791 .......... .......... .......... .......... .......... .......... 330 TCTTTCTCTT TTGTTGAGGC AGGATTATGT AGGTGAAGAT GCTAATGCTA ACAACGTTTA 85851 .......... .......... .......... .......... .......... .......... 330 CAATGTCATC CTTGCAAACA AAAGTGGTGT TGTTGGAGGA AGTGGGAATG TTTTGAAGAG 85911 .......... .......... .......... .......... .......... .......... 330 TGGCCCATAT GACCATATCT TCATATACTA TACTGATCAT GGTACCGCTG GATTTATTAG 85971 .......... .......... .......... .......... .......... .......... 330 TAAGTATCTT CATTGCATTA ATTTGTTTTT TCTTCTGTCC TAATTTAAGG GTCTTACTTT 86031 .......... .......... .......... .......... .......... .......... 330 TCTTTTTGGT TTGCCGAGTT TCTTTTTATA TTTAGCAAGT TTTTCAATTT TGATATTCCA 86091 .......... .......... .......... .......... .......... .......... 330 TATGCAAGTT TAACGCCACA AGATTAGAAA CTCTTTAGCT TCATGACACT TAAACTGGGA 86151 .......... .......... .......... .......... .......... .......... 330 CAGTTGGAGT AATTATTATC TCAGAAAGTT AGTTTGTTTG TTCATTGAAA AGAATTGGAA 86211 .......... .......... .......... .......... .......... .......... 330 TCAACTAGAA ATGTGACTTT CTGACATAAT AAACTTATTA GTTGAGTCAC TATGTAAAAA 86271 .......... .......... .......... .......... .......... .......... 330 ATGAGACCCT ATTTTGAAGT TGTGAAAATG TAACATTCTA ATAAGAAATT CTTAATCCAT 86331 .......... .......... .......... .......... .......... .......... 330 ATTTTGTCGC AGTTGTTGTG AATGTGTATA AGCAATTCAT GTTAGGAACT TACCGTCTAA 86391 .......... .......... .......... .......... .......... .......... 330 TGACATAATT AGGCAATTGG AAAATTAAGC TAATACTCGT TACAAATCAA AGTTTGCAAT 86451 .......... .......... .......... .......... .......... .......... 330 TTGTGATACT TTGAAACTGA TTAGGATATG CATAATTTTT TTATTGTTTT TATTATTATC 86511 .......... .......... .......... .......... .......... .......... 330 AGCAATGCCA AGTGGAGAAT CGATTTACAC AGATGATCTA TTTAAAGTGT TGAAAAAGAA 86571 .......... .......... .......... .......... .......... .......... 330 GCATGCTTCA GGGACGTATG ACAGTCTAGT AACTTGCTTG CTTTAGTTTT TTAGGGTTCC 86631 .......... .......... .......... .......... .......... .......... 330 TTTCCCTTTG CGTGAATGCT TTAGGGATGT ATAAAGTCTG TGTTTTATGT TGGATGATGT 86691 .......... .......... .......... .......... .......... .......... 330 TCAGGTGTTT TACCTAGAAG CCTATGAGTC TGGAAGCATG TTTTGGCACA TACTGTGGCG 86751 .......... .......... .......... .......... .......... .......... 330 ATGGTACTCT TGATGATCCC TGCTTTGGTC AGTGTCCCCC TACCGAGTTT AAGGGTGTTT 86811 .......... .......... .......... .......... .......... .......... 330 GCTTGGGAGA CTTGTTCAGT GTTTCCTAGA TGGAAGATAG GTATAAATAA CTTCTACATC 86871 .......... .......... .......... .......... .......... .......... 330 CTCTGTTCTT GTAGTCCACA TTGTTAGGAA GAAGTATGCC AAGTATAGTT TCTTGTATTT 86931 .......... .......... .......... .......... .......... .......... 330 TGTTTCTATA ATTTACACTT GGAAATGACG TATTGATATA CCATGGTTTC ACGATATAAT 86991 .......... .......... .......... .......... .......... .......... 330 TAATACTTTT TTCTTAAGTT TAGTATGTCC GAAAGCCTTT TTTGTGCTAA TTTTGATATA 87051 .......... .......... .......... .......... .......... .......... 330 AGTTTCTCTT TGTTTTGCAG GAAATCTGTC CAAAGCTGAT TGCGGAGATT TTGAGCGAAA 87111 .......... .......... .......... .......... .......... .......... 330 AATGCAGAAG AAACCACCTA CGGATCTTAT GACGGTCCGT CGTGCATGTG ACGGTCCGTA 87171 .......... .......... .......... .......... .......... .......... 330 GGTGGCAGCG CAGAGAAGCT GCTAAAGGAA GATGGGGAAG TCTGACCAAG TGTGGTATTA 87231 .......... .......... .......... .......... .......... .......... 330 CGAAGCTTGT GACGGTCCGT CATGGCTATG ACGGTCTTTC CTGCAGGTTC ATCGTGAAGA 87291 .......... .......... .......... .......... .......... .......... 330 TCAGAGAAGT GATTCCAGTA ACCAGATTCC AAGAGTTGAA GTATTTTGAA ACGAGACCCT 87351 .......... .......... .......... .......... .......... .......... 330 CGACGGACCG TTGTGCCTAT GACGGTCCGT CACACTTGCC GTCGAGGGGA AGGAAGAAAG 87411 .......... .......... .......... .......... .......... .......... 330 CAGCAGAAGA AATTGCACCA AGCATGGGAC GACGGAGTCC ACGACGGTCC GTTATGACCA 87471 .......... .......... .......... .......... .......... .......... 330 CGACGGTCTG TCGCGTGGTC CGTTGACTCA GCCGCGTTTT GGCAGATTTC CAGTAATTAG 87531 .......... .......... .......... .......... .......... .......... 330 AATCCTTGTT TAATTAGGTT TTTATTTTTT TATAAATAGT TCGAAAAACC TCATTTTTGA 87591 .......... .......... .......... .......... .......... .......... 330 GGTTAGACTC TGGGAGATAA AACATCATAT TATTAGACTT TGTGTTTGAG TGTTTGATTT 87651 .......... .......... .......... .......... .......... .......... 330 TTAGAGATTC TTACAAGTGA TTTTTGGTGA TTAATCAAGC AATTTTTCGA ACTTTACTCT 87711 ||| || .......... .......... .......... .......... .......... ..TTTCTTCA 338 TTCTCATTGA AGTAAGTACA TAAATTCTTA TTTAATATAT TTGAATATTT TGTTTATGGC 87771 | |||| | || ||||||| | ||||||| | |||| || ||||| | | ||||| ATGTCATCAA AGCAAGTACA TTAATTCTTG TCTAATCAAT ATGAATTGTG TAATTATGAA 398 TATGAGGAAC TAAACTCCAT AACTAGGGTT GTGGGAACC- TAGGCAAATA ATGAGATAAA 87830 || | ||| |||| || || |||||||||| ||||||||| | | ||||| | || |||| CATTGGTAAC TAAA-TCTAT AACTAGGGTT GTGGGAACCA TGGTTAAATA ACAAGGTAAA 457 CCCTAGCTAA AATAACAATT CTAGAATAGT GTCTTGCATG TATTAATAAT TCTTTCGCTT 87890 ||| |||| |||||||||| ||| |||||| |||||||||| | || ||||| | ||||| | AACTATCTAA AATAACAATT CTACAATAGT GTCTTGCATG TTTTGATAAT TATTTCGTAT 517 AGAAGTCTTT TTAACGGATG ATCAATGTTA GAACTCGCCT TAATGCTAC 87939 |||||||||| ||||| || | |||| ||| | | | | |||||| AGAAGTCTTT TTAACAAGTG CAC-GCGTTA GAA-TTGGAT TTTTGCTAC 564 hqPGS_C08HBa0197A05.1+_SGN-E205253+ (87704 87939) ******************************************************************************** EST sequence 69 -strand 695 n (File: SGN-E241731-) 1 ATTCTATTAT TAGATATATA TGAATATTGT GATTATGACT ATGGGTAACT AAGCTACATA 61 ACTATGGTTG TGGGAACCAT GGGTGAATAA TGAGGTAAAA TCTAACTAAA ATAACAATTC 121 TAGAATAGTG TCTTGCATGT ATTGATAATT GTTTTGCTTA GAAGTCTTTT TAACGGATGG 181 TCAACATTAG AACTCGCCTT AGTGCTACTT GCCGGACCAA GAAGGTAGAT AATAGCAAAA 241 GAATTATTAA CATAAATTTA GTGTATACTT TTTGATAGGC TAGTATTGAT TGGTACGAGG 301 TAATAACTTA GTCAAATATC GAATACAATG CTTAATATGA GGTAATGGTA AGGGTTTATA 361 TAGCAACACA CGTAGACGGA CCAAGGTGCG TAGTGATATT TTCTAGATGC AAGACCAAGG 421 ATATAGAAAT ACATAACTTA TTACTTTGTA TGCAAGATAC TAGGAAAGAA TTGTTATAGT 481 TAGAATTATT AAATTAGGAA CTTGTGGAGA ACACTTAAAC CCTAGTTAAT TATATTATTT 541 GATTAAATTC CAACATTTGA ATTTGTTAGT TGCCTACTTA AATTTAGCTA GCTATTTCCA 601 TTCATTTAGA ACTAAAACCC CCCTTTTTAT TGTCTTTGTT TTCTAAAGAA ATAATTGACT 661 AACTAATAGT AATAACAAAT TGAAAATAAC TCTGA Predicted gene structure (within gDNA segment 86177 to 90889): Exon 1 87739 88423 ( 685 n); cDNA 7 693 ( 687 n); score: 0.844 MATCH C08HBa0197A05.1+ SGN-E241731- 0.844 685 0.986 C PGS_C08HBa0197A05.1+_SGN-E241731- (87739 88423) Alignment (genomic DNA sequence = upper lines): TTATTTAATA TATTTGAATA TTTTGTTTAT GGCTATGAGG AACTAAACTC CATAACTAGG 87798 ||||| ||| ||| |||||| || || |||| | ||||| | |||||| || |||||||| | TTATTAGATA TATATGAATA TTGTGATTAT GACTATGGGT AACTAAGCTA CATAACTATG 66 GTTGTGGGAA CC-TAGGCAA ATAATGAGAT AAACCCTAGC TAAAATAACA ATTCTAGAAT 87857 |||||||||| || | || | |||||||| | ||| ||| | |||||||||| |||||||||| GTTGTGGGAA CCATGGGTGA ATAATGAGGT AAAATCTAAC TAAAATAACA ATTCTAGAAT 126 AGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC TTTTTAACGG ATGATCAATG 87917 |||||||||| ||||||| || |||| ||| | |||||||||| |||||||||| ||| |||| AGTGTCTTGC ATGTATTGAT AATTGTTTTG CTTAGAAGTC TTTTTAACGG ATGGTCAACA 186 TTAGAACTCG CCTTAATGCT ACTTGCCGGA CCAAGGAGGT AGATAATAGG AAAAGAATTA 87977 |||||||||| ||||| |||| |||||||||| ||||| |||| ||||||||| |||||||||| TTAGAACTCG CCTTAGTGCT ACTTGCCGGA CCAAGAAGGT AGATAATAGC AAAAGAATTA 246 TTAACATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 88037 |||||||| | |||||||||| ||| | | || |||||||||| |||||||||| |||||||||| TTAACATAAA TTTAGTGTAT ACTTTTTGAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 306 CTTAGTCAAA TATCGAATAC GATGCTTAAT ATGAGGTAAA GATAAGGGTT AGGAAAGCAA 88097 |||||||||| |||||||||| ||||||||| ||||||||| | |||||||| | ||||| CTTAGTCAAA TATCGAATAC AATGCTTAAT ATGAGGTAAT GGTAAGGGTT TATATAGCAA 366 CACACGCAGC CGGACCAAGG TGCGGAGTGA GATTTTCTAG ATGCCGGACC AAGGATTTAG 88157 |||||| || |||||||||| |||| ||||| ||||||||| |||| |||| |||||| ||| CACACGTAGA CGGACCAAGG TGCGTAGTGA TATTTTCTAG ATGCAAGACC AAGGATATAG 426 AAATACATAA CTTATCACTT TGCATGCAAG ATACTAGGAA AGAACTGTTA TAGTTAGAAT 88217 |||||||||| ||||| |||| || ||||||| |||||||||| |||| ||||| |||||||||| AAATACATAA CTTATTACTT TGTATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 486 TACCAAGTTA TGAACCTGTG G-GAACACGT AAACCCTAGT TACTTTGATT AATTGATTAA 88276 || || ||| |||| |||| | |||||| | |||||||||| || || ||| | |||||||| TATTAAATTA GGAACTTGTG GAGAACACTT AAACCCTAGT TAATTATATT ATTTGATTAA 546 AACCCAAAAT TAAAAGCTGT TAAGTGTCTC TGTCAAGTTC GTTAGTTATT TTCACTTATT 88336 | |||| || | || ||| || || || | || || | ||| |||| | || | ||| ATTCCAACAT TTGAATTTGT TAGTTGCCTA CTTAAATTTA GCTAGCTATT TCCATTCATT 606 AGGAAATAAA AACCCCCCTT TTTATGTTTT TACTTTCTAA GGAAGTCATC AACCGAACAA 88396 ||| |||| | ||||| || || ||| || | ||||||| ||| | || || | || TAGAACTAAA ACCCCCCTTT TTATTGTCTT TGTTTTCTAA AGAAATAATT GACTAACTAA 666 TAGTAATAAC AAGTTGAAGT TAAGTCT 88423 |||||||||| || ||||| ||| ||| TAGTAATAAC AAATTGAAAA TAACTCT 693 hqPGS_C08HBa0197A05.1+_SGN-E241731- (87739 88423) ******************************************************************************** EST sequence 6 +strand 653 n (File: SGN-E548195+) 1 TTCCTTTTTG TTTTTTTTTT TTTTTTTTTT TTTTTTTTTA CAAATTCATC TTTAAATTAT 61 ACCTCAAATT TAAACTACAT CTTTAAAGTA TTATTCTTAA CAGAAGATAT CCTTCAATTA 121 TTTGAAAATG AACAAGTTCA TTTTTCTATT TTAATTTATC AGAAAACTAA CAGGTCACAC 181 AAAAATCAAG TCATTCCTAT TGGGAAAACA CGGACAAGCA TAAAAGTATA TATGGTAAAT 241 GTAATGGAAA TAAAATGAGA AAATAACGAC ACCAATAATT TTACGTGGAA GCCCTTCTGA 301 ATAAGGGAAA AAACCACGGG CCAAGAGGAG CCATAATGTT GAAGAGCTAT CGCTTTCAAC 361 CGCATTCACC ATATCAACAA GCAGAGGCCG TAGTCCAGTA TTGACCACGA CGTTTGTTAC 421 CACGAGCCAC AACCAAGGAA CCCTTAATGA GCTTCCATTT TCCATCACCG TTGGTACTAA 481 CATATCCTTC ATCATCTAAA ACACCAACAG AAATTAGGTG CAGACGAACA TCAAGAGCAT 541 GTTTCACATT GTTCAAAACT AGTTTAGTTC CAATACTAGT TTCCAAACAA ATTGTACCAA 601 TACCAACCAC CCTAGAAACA GTCTTTTTAC CCATACTCAA GGTTCCAAAA TCA Predicted gene structure (within gDNA segment 85238 to 91177): Exon 1 86518 86529 ( 12 n); cDNA 320 331 ( 12 n); score: 0.833 Intron 1 86530 89784 (3255 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 89785 90108 ( 324 n); cDNA 332 653 ( 322 n); score: 0.898 PPA cDNA 39 5 MATCH C08HBa0197A05.1+ SGN-E548195+ 0.898 336 0.515 C PGS_C08HBa0197A05.1+_SGN-E548195+ (86518 86529,89785 90108) Alignment (genomic DNA sequence = upper lines): GCCAAGTGGA GAATCGATTT ACACAGATGA TCTATTTAAA GTGTTGAAAA AGAAGCATGC 86577 |||||| ||| | GCCAAGAGGA GC........ .......... .......... .......... .......... 331 TTCAGGGACG TATGACAGTC TAGTAACTTG CTTGCTTTAG TTTTTTAGGG TTCCTTTCCC 86637 .......... .......... .......... .......... .......... .......... 331 TTTGCGTGAA TGCTTTAGGG ATGTATAAAG TCTGTGTTTT ATGTTGGATG ATGTTCAGGT 86697 .......... .......... .......... .......... .......... .......... 331 GTTTTACCTA GAAGCCTATG AGTCTGGAAG CATGTTTTGG CACATACTGT GGCGATGGTA 86757 .......... .......... .......... .......... .......... .......... 331 CTCTTGATGA TCCCTGCTTT GGTCAGTGTC CCCCTACCGA GTTTAAGGGT GTTTGCTTGG 86817 .......... .......... .......... .......... .......... .......... 331 GAGACTTGTT CAGTGTTTCC TAGATGGAAG ATAGGTATAA ATAACTTCTA CATCCTCTGT 86877 .......... .......... .......... .......... .......... .......... 331 TCTTGTAGTC CACATTGTTA GGAAGAAGTA TGCCAAGTAT AGTTTCTTGT ATTTTGTTTC 86937 .......... .......... .......... .......... .......... .......... 331 TATAATTTAC ACTTGGAAAT GACGTATTGA TATACCATGG TTTCACGATA TAATTAATAC 86997 .......... .......... .......... .......... .......... .......... 331 TTTTTTCTTA AGTTTAGTAT GTCCGAAAGC CTTTTTTGTG CTAATTTTGA TATAAGTTTC 87057 .......... .......... .......... .......... .......... .......... 331 TCTTTGTTTT GCAGGAAATC TGTCCAAAGC TGATTGCGGA GATTTTGAGC GAAAAATGCA 87117 .......... .......... .......... .......... .......... .......... 331 GAAGAAACCA CCTACGGATC TTATGACGGT CCGTCGTGCA TGTGACGGTC CGTAGGTGGC 87177 .......... .......... .......... .......... .......... .......... 331 AGCGCAGAGA AGCTGCTAAA GGAAGATGGG GAAGTCTGAC CAAGTGTGGT ATTACGAAGC 87237 .......... .......... .......... .......... .......... .......... 331 TTGTGACGGT CCGTCATGGC TATGACGGTC TTTCCTGCAG GTTCATCGTG AAGATCAGAG 87297 .......... .......... .......... .......... .......... .......... 331 AAGTGATTCC AGTAACCAGA TTCCAAGAGT TGAAGTATTT TGAAACGAGA CCCTCGACGG 87357 .......... .......... .......... .......... .......... .......... 331 ACCGTTGTGC CTATGACGGT CCGTCACACT TGCCGTCGAG GGGAAGGAAG AAAGCAGCAG 87417 .......... .......... .......... .......... .......... .......... 331 AAGAAATTGC ACCAAGCATG GGACGACGGA GTCCACGACG GTCCGTTATG ACCACGACGG 87477 .......... .......... .......... .......... .......... .......... 331 TCTGTCGCGT GGTCCGTTGA CTCAGCCGCG TTTTGGCAGA TTTCCAGTAA TTAGAATCCT 87537 .......... .......... .......... .......... .......... .......... 331 TGTTTAATTA GGTTTTTATT TTTTTATAAA TAGTTCGAAA AACCTCATTT TTGAGGTTAG 87597 .......... .......... .......... .......... .......... .......... 331 ACTCTGGGAG ATAAAACATC ATATTATTAG ACTTTGTGTT TGAGTGTTTG ATTTTTAGAG 87657 .......... .......... .......... .......... .......... .......... 331 ATTCTTACAA GTGATTTTTG GTGATTAATC AAGCAATTTT TCGAACTTTA CTCTTTCTCA 87717 .......... .......... .......... .......... .......... .......... 331 TTGAAGTAAG TACATAAATT CTTATTTAAT ATATTTGAAT ATTTTGTTTA TGGCTATGAG 87777 .......... .......... .......... .......... .......... .......... 331 GAACTAAACT CCATAACTAG GGTTGTGGGA ACCTAGGCAA ATAATGAGAT AAACCCTAGC 87837 .......... .......... .......... .......... .......... .......... 331 TAAAATAACA ATTCTAGAAT AGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC 87897 .......... .......... .......... .......... .......... .......... 331 TTTTTAACGG ATGATCAATG TTAGAACTCG CCTTAATGCT ACTTGCCGGA CCAAGGAGGT 87957 .......... .......... .......... .......... .......... .......... 331 AGATAATAGG AAAAGAATTA TTAACATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT 88017 .......... .......... .......... .......... .......... .......... 331 TGATTGGTAC GAGGTAATAA CTTAGTCAAA TATCGAATAC GATGCTTAAT ATGAGGTAAA 88077 .......... .......... .......... .......... .......... .......... 331 GATAAGGGTT AGGAAAGCAA CACACGCAGC CGGACCAAGG TGCGGAGTGA GATTTTCTAG 88137 .......... .......... .......... .......... .......... .......... 331 ATGCCGGACC AAGGATTTAG AAATACATAA CTTATCACTT TGCATGCAAG ATACTAGGAA 88197 .......... .......... .......... .......... .......... .......... 331 AGAACTGTTA TAGTTAGAAT TACCAAGTTA TGAACCTGTG GGAACACGTA AACCCTAGTT 88257 .......... .......... .......... .......... .......... .......... 331 ACTTTGATTA ATTGATTAAA ACCCAAAATT AAAAGCTGTT AAGTGTCTCT GTCAAGTTCG 88317 .......... .......... .......... .......... .......... .......... 331 TTAGTTATTT TCACTTATTA GGAAATAAAA ACCCCCCTTT TTATGTTTTT ACTTTCTAAG 88377 .......... .......... .......... .......... .......... .......... 331 GAAGTCATCA ACCGAACAAT AGTAATAACA AGTTGAAGTT AAGTCTAGAC TATTTTCCTC 88437 .......... .......... .......... .......... .......... .......... 331 GTGGGAACGA TCCCAACCTC ACTAGTTGGG TTATTTACTT GACGCGACCA CTTTACTTCT 88497 .......... .......... .......... .......... .......... .......... 331 CATTTGAGAA GTAAGTTTGA GCGTATCACG TATTATGTCA AACTAATTAT TGTTTGCATT 88557 .......... .......... .......... .......... .......... .......... 331 TATGTACAGT GATGTACAAG ATCGAAAAAC TAACACCTTG CATGGGCAGT ATAGTCGAGT 88617 .......... .......... .......... .......... .......... .......... 331 AAGAGTTTAT ACTGTTATGC TTTAAGCAAT TTATTTGGAC AATACCTATG CTTTTTATTC 88677 .......... .......... .......... .......... .......... .......... 331 CATTTTAATG GAAGATTTAT GATTCCATTT TGTCGCTTAG GTTGCAAAAA GAGTTAATGT 88737 .......... .......... .......... .......... .......... .......... 331 CAACTTAACA TATCCAAACT ATTGCTCCAA TGTCCAAGGG TATGGTGATA AAGTGGTGAG 88797 .......... .......... .......... .......... .......... .......... 331 ATTTGATCCT TTTGGCGCGT ATATGGGTGA AACTTCCAAA AATAACAGTC ATGACTCTCT 88857 .......... .......... .......... .......... .......... .......... 331 GGATGCAAAG TCATTCCCGA CATCATCATT AAGGAATATG GATCAGTGCA AGTACTAAAC 88917 .......... .......... .......... .......... .......... .......... 331 TTTTCTATTT GTTCACCAAA AGATTTGATT CTCCATGAAA ATAATATCAC GGCTAAGTTT 88977 .......... .......... .......... .......... .......... .......... 331 CTTTTCAATT GGATCATATA GCCCGTAACC AAATTCATCT AGGCCATATC CAATGAAGAT 89037 .......... .......... .......... .......... .......... .......... 331 GCATTGCCTT GTATTGGCAT CTAACTTTAA CCTCTCATCT TTCGGCACAT GTACAAAAGC 89097 .......... .......... .......... .......... .......... .......... 331 TTTGAAACTA AATACTCTCA GATGGTCATA GGAAACATCC TTTCCATACC AAACACTATT 89157 .......... .......... .......... .......... .......... .......... 331 TGGTACATCA CTTTGCAAAG CAACAACATG AGATTGATTA ATAACATGTG CAACGGTCAA 89217 .......... .......... .......... .......... .......... .......... 331 TAAAGCTTCA CCCCAAAATG AGTTCGGCAA CTTTGCTTCA GTTAGCAAAC ATCTAACTCT 89277 .......... .......... .......... .......... .......... .......... 331 TTCCATCAAG GTCCTGTTCA TCCTCTCAGC CAAACCATTA AGCTGAGGAG TATTGGGAGG 89337 .......... .......... .......... .......... .......... .......... 331 AGTCTTCTGG TGTCTAATAC CTTGATGCTT GCAGTATTTG TCAAATGATC AACAATATTC 89397 .......... .......... .......... .......... .......... .......... 331 ACCACCGTTA TCAGAACAAA TACATTTAAG TTTCCTTCCA ATTTCTCTTT CAGTTAAAGC 89457 .......... .......... .......... .......... .......... .......... 331 CTAAAACTTC TTGAAGACAC GTAACACTTG GTTTTTAGTC TTCGAGATAT AGACCTAAAG 89517 .......... .......... .......... .......... .......... .......... 331 TTTTCTCGAG CAATCATCAA TGAAAGTGAT AAAGTAGAGT GCACCACCCA ATGTCTTTGT 89577 .......... .......... .......... .......... .......... .......... 331 CTTCATTGGA CCACATAAAT CAGAATACAC CAACTCAAGC AACTCTATCT TTCTAGAAGA 89637 .......... .......... .......... .......... .......... .......... 331 AGGGTAGGAC GTAAAAGATA TTTATTTTGT TTACCAGCCA AGCAGTGCTC ACACTTTTCT 89697 .......... .......... .......... .......... .......... .......... 331 AATTTAGCAC TTTTGAAATT TGACAAAAAT TTCTTATTGG CTAGAACATT AAGTCCTTTC 89757 .......... .......... .......... .......... .......... .......... 331 TCACTGATGT GGCTGAGTCT CTTGTGTCAT AACGTTGAGA AGTTATCGCT CTCAACTGCA 89817 ||| || ||||| || ||||||| ||||| ||| .......... .......... .......CAT AATGTTGAAG AGCTATCGCT TTCAACCGCA 364 TTCACCATAT CAACACAAGT AGATACCATA GTCAATTATA GACCACGACG TTTGTTACCA 89877 |||||||||| ||| |||| ||| || || ||| | ||| |||||||||| |||||||||| TTCACCATAT CAA--CAAGC AGAGGCCGTA GTCCAGTATT GACCACGACG TTTGTTACCA 422 CGAGCCAAAA CTAAGGAACC CTTAATGAGC TTTCATTTTC CATCATCGTT GGTACTAACA 89937 ||||||| || | |||||||| |||||||||| || ||||||| ||||| |||| |||||||||| CGAGCCACAA CCAAGGAACC CTTAATGAGC TTCCATTTTC CATCACCGTT GGTACTAACA 482 TATCTTTCAT CATCTAAAAC CCCAATAAAA ATTAGGTACA GACGAACATT AGGAGCATGT 89997 |||| ||||| |||||||||| |||| | || ||||||| || ||||||||| | |||||||| TATCCTTCAT CATCTAAAAC ACCAACAGAA ATTAGGTGCA GACGAACATC AAGAGCATGT 542 TTCATATTGT TCAAAACTAG TTTAGTTCCA ACACTAGTTT CCAAACAAAT TGTACCAATA 90057 |||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TTCACATTGT TCAAAACTAG TTTAGTTCCA ATACTAGTTT CCAAACAAAT TGTACCAATA 602 TCAACCACCC TAGAAAAAGT CTCATTACCC ATACTCAAGG TTCAAAAATC A 90108 ||||||||| |||||| ||| || |||||| |||||||||| ||| |||||| | CCAACCACCC TAGAAACAGT CTTTTTACCC ATACTCAAGG TTCCAAAATC A 653 hqPGS_C08HBa0197A05.1+_SGN-E548195+ (89785 90108) ******************************************************************************** EST sequence 47 -strand 614 n (File: SGN-E539285-) 1 TCAAATTCAT CTTTAAATTA TACCTCAAAT TTAAACTACA TCTTTAAAGT ATTATTCTTA 61 ACAGAAGATA TCCTTCAATT ATTTGAAAAT GAACAAGTTC ATTTTTCTAT TTTAATTTAT 121 CAGAAAACTA ACAGGTCACA CAAAAATCAA GTCATTCCTA TTGGGAAAAC ACGGACAAGC 181 ATAAAAGTAT ATATGGTAAA TGTAATGGAA ATAAAATGAG AAAATAACGA CACCAATAAT 241 TTTACGTGGA AGCCCTTCTG AATAAGGGAA AAAACCACGG GCCAAGAGGA GCCATAATGT 301 TGAAGAGCTA TCGCTTTCAA CCGCATTCAC CATATCAACA AGCAGAGGCC GTAGTCCAGT 361 ATTGACCACG ACGTTTGTTA CCACGAGCCA CAACCAAGGA ACCCTTAATG AGCTTCCATT 421 TTCCATCACC GTTGGTACTA ACATATCCTT CATCATCTAA AACACCAACA GAAATTAGGT 481 GCAGACGAAC ATCAAGAGCA TGTTTCACAT TGTTCAAAAC TAGTTTAGTT CCAATACTAG 541 TTTCCAAACA AATTGTACCA ATACCAACCA CCCTAGAAAC AGTCTTTTTA CCCATACTCA 601 AGGTTCCAAA ATCA Predicted gene structure (within gDNA segment 85618 to 91167): Exon 1 86518 86529 ( 12 n); cDNA 281 292 ( 12 n); score: 0.833 Intron 1 86530 89784 (3255 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 89785 90108 ( 324 n); cDNA 293 614 ( 322 n); score: 0.898 MATCH C08HBa0197A05.1+ SGN-E539285- 0.898 336 0.547 C PGS_C08HBa0197A05.1+_SGN-E539285- (86518 86529,89785 90108) Alignment (genomic DNA sequence = upper lines): GCCAAGTGGA GAATCGATTT ACACAGATGA TCTATTTAAA GTGTTGAAAA AGAAGCATGC 86577 |||||| ||| | GCCAAGAGGA GC........ .......... .......... .......... .......... 292 TTCAGGGACG TATGACAGTC TAGTAACTTG CTTGCTTTAG TTTTTTAGGG TTCCTTTCCC 86637 .......... .......... .......... .......... .......... .......... 292 TTTGCGTGAA TGCTTTAGGG ATGTATAAAG TCTGTGTTTT ATGTTGGATG ATGTTCAGGT 86697 .......... .......... .......... .......... .......... .......... 292 GTTTTACCTA GAAGCCTATG AGTCTGGAAG CATGTTTTGG CACATACTGT GGCGATGGTA 86757 .......... .......... .......... .......... .......... .......... 292 CTCTTGATGA TCCCTGCTTT GGTCAGTGTC CCCCTACCGA GTTTAAGGGT GTTTGCTTGG 86817 .......... .......... .......... .......... .......... .......... 292 GAGACTTGTT CAGTGTTTCC TAGATGGAAG ATAGGTATAA ATAACTTCTA CATCCTCTGT 86877 .......... .......... .......... .......... .......... .......... 292 TCTTGTAGTC CACATTGTTA GGAAGAAGTA TGCCAAGTAT AGTTTCTTGT ATTTTGTTTC 86937 .......... .......... .......... .......... .......... .......... 292 TATAATTTAC ACTTGGAAAT GACGTATTGA TATACCATGG TTTCACGATA TAATTAATAC 86997 .......... .......... .......... .......... .......... .......... 292 TTTTTTCTTA AGTTTAGTAT GTCCGAAAGC CTTTTTTGTG CTAATTTTGA TATAAGTTTC 87057 .......... .......... .......... .......... .......... .......... 292 TCTTTGTTTT GCAGGAAATC TGTCCAAAGC TGATTGCGGA GATTTTGAGC GAAAAATGCA 87117 .......... .......... .......... .......... .......... .......... 292 GAAGAAACCA CCTACGGATC TTATGACGGT CCGTCGTGCA TGTGACGGTC CGTAGGTGGC 87177 .......... .......... .......... .......... .......... .......... 292 AGCGCAGAGA AGCTGCTAAA GGAAGATGGG GAAGTCTGAC CAAGTGTGGT ATTACGAAGC 87237 .......... .......... .......... .......... .......... .......... 292 TTGTGACGGT CCGTCATGGC TATGACGGTC TTTCCTGCAG GTTCATCGTG AAGATCAGAG 87297 .......... .......... .......... .......... .......... .......... 292 AAGTGATTCC AGTAACCAGA TTCCAAGAGT TGAAGTATTT TGAAACGAGA CCCTCGACGG 87357 .......... .......... .......... .......... .......... .......... 292 ACCGTTGTGC CTATGACGGT CCGTCACACT TGCCGTCGAG GGGAAGGAAG AAAGCAGCAG 87417 .......... .......... .......... .......... .......... .......... 292 AAGAAATTGC ACCAAGCATG GGACGACGGA GTCCACGACG GTCCGTTATG ACCACGACGG 87477 .......... .......... .......... .......... .......... .......... 292 TCTGTCGCGT GGTCCGTTGA CTCAGCCGCG TTTTGGCAGA TTTCCAGTAA TTAGAATCCT 87537 .......... .......... .......... .......... .......... .......... 292 TGTTTAATTA GGTTTTTATT TTTTTATAAA TAGTTCGAAA AACCTCATTT TTGAGGTTAG 87597 .......... .......... .......... .......... .......... .......... 292 ACTCTGGGAG ATAAAACATC ATATTATTAG ACTTTGTGTT TGAGTGTTTG ATTTTTAGAG 87657 .......... .......... .......... .......... .......... .......... 292 ATTCTTACAA GTGATTTTTG GTGATTAATC AAGCAATTTT TCGAACTTTA CTCTTTCTCA 87717 .......... .......... .......... .......... .......... .......... 292 TTGAAGTAAG TACATAAATT CTTATTTAAT ATATTTGAAT ATTTTGTTTA TGGCTATGAG 87777 .......... .......... .......... .......... .......... .......... 292 GAACTAAACT CCATAACTAG GGTTGTGGGA ACCTAGGCAA ATAATGAGAT AAACCCTAGC 87837 .......... .......... .......... .......... .......... .......... 292 TAAAATAACA ATTCTAGAAT AGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC 87897 .......... .......... .......... .......... .......... .......... 292 TTTTTAACGG ATGATCAATG TTAGAACTCG CCTTAATGCT ACTTGCCGGA CCAAGGAGGT 87957 .......... .......... .......... .......... .......... .......... 292 AGATAATAGG AAAAGAATTA TTAACATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT 88017 .......... .......... .......... .......... .......... .......... 292 TGATTGGTAC GAGGTAATAA CTTAGTCAAA TATCGAATAC GATGCTTAAT ATGAGGTAAA 88077 .......... .......... .......... .......... .......... .......... 292 GATAAGGGTT AGGAAAGCAA CACACGCAGC CGGACCAAGG TGCGGAGTGA GATTTTCTAG 88137 .......... .......... .......... .......... .......... .......... 292 ATGCCGGACC AAGGATTTAG AAATACATAA CTTATCACTT TGCATGCAAG ATACTAGGAA 88197 .......... .......... .......... .......... .......... .......... 292 AGAACTGTTA TAGTTAGAAT TACCAAGTTA TGAACCTGTG GGAACACGTA AACCCTAGTT 88257 .......... .......... .......... .......... .......... .......... 292 ACTTTGATTA ATTGATTAAA ACCCAAAATT AAAAGCTGTT AAGTGTCTCT GTCAAGTTCG 88317 .......... .......... .......... .......... .......... .......... 292 TTAGTTATTT TCACTTATTA GGAAATAAAA ACCCCCCTTT TTATGTTTTT ACTTTCTAAG 88377 .......... .......... .......... .......... .......... .......... 292 GAAGTCATCA ACCGAACAAT AGTAATAACA AGTTGAAGTT AAGTCTAGAC TATTTTCCTC 88437 .......... .......... .......... .......... .......... .......... 292 GTGGGAACGA TCCCAACCTC ACTAGTTGGG TTATTTACTT GACGCGACCA CTTTACTTCT 88497 .......... .......... .......... .......... .......... .......... 292 CATTTGAGAA GTAAGTTTGA GCGTATCACG TATTATGTCA AACTAATTAT TGTTTGCATT 88557 .......... .......... .......... .......... .......... .......... 292 TATGTACAGT GATGTACAAG ATCGAAAAAC TAACACCTTG CATGGGCAGT ATAGTCGAGT 88617 .......... .......... .......... .......... .......... .......... 292 AAGAGTTTAT ACTGTTATGC TTTAAGCAAT TTATTTGGAC AATACCTATG CTTTTTATTC 88677 .......... .......... .......... .......... .......... .......... 292 CATTTTAATG GAAGATTTAT GATTCCATTT TGTCGCTTAG GTTGCAAAAA GAGTTAATGT 88737 .......... .......... .......... .......... .......... .......... 292 CAACTTAACA TATCCAAACT ATTGCTCCAA TGTCCAAGGG TATGGTGATA AAGTGGTGAG 88797 .......... .......... .......... .......... .......... .......... 292 ATTTGATCCT TTTGGCGCGT ATATGGGTGA AACTTCCAAA AATAACAGTC ATGACTCTCT 88857 .......... .......... .......... .......... .......... .......... 292 GGATGCAAAG TCATTCCCGA CATCATCATT AAGGAATATG GATCAGTGCA AGTACTAAAC 88917 .......... .......... .......... .......... .......... .......... 292 TTTTCTATTT GTTCACCAAA AGATTTGATT CTCCATGAAA ATAATATCAC GGCTAAGTTT 88977 .......... .......... .......... .......... .......... .......... 292 CTTTTCAATT GGATCATATA GCCCGTAACC AAATTCATCT AGGCCATATC CAATGAAGAT 89037 .......... .......... .......... .......... .......... .......... 292 GCATTGCCTT GTATTGGCAT CTAACTTTAA CCTCTCATCT TTCGGCACAT GTACAAAAGC 89097 .......... .......... .......... .......... .......... .......... 292 TTTGAAACTA AATACTCTCA GATGGTCATA GGAAACATCC TTTCCATACC AAACACTATT 89157 .......... .......... .......... .......... .......... .......... 292 TGGTACATCA CTTTGCAAAG CAACAACATG AGATTGATTA ATAACATGTG CAACGGTCAA 89217 .......... .......... .......... .......... .......... .......... 292 TAAAGCTTCA CCCCAAAATG AGTTCGGCAA CTTTGCTTCA GTTAGCAAAC ATCTAACTCT 89277 .......... .......... .......... .......... .......... .......... 292 TTCCATCAAG GTCCTGTTCA TCCTCTCAGC CAAACCATTA AGCTGAGGAG TATTGGGAGG 89337 .......... .......... .......... .......... .......... .......... 292 AGTCTTCTGG TGTCTAATAC CTTGATGCTT GCAGTATTTG TCAAATGATC AACAATATTC 89397 .......... .......... .......... .......... .......... .......... 292 ACCACCGTTA TCAGAACAAA TACATTTAAG TTTCCTTCCA ATTTCTCTTT CAGTTAAAGC 89457 .......... .......... .......... .......... .......... .......... 292 CTAAAACTTC TTGAAGACAC GTAACACTTG GTTTTTAGTC TTCGAGATAT AGACCTAAAG 89517 .......... .......... .......... .......... .......... .......... 292 TTTTCTCGAG CAATCATCAA TGAAAGTGAT AAAGTAGAGT GCACCACCCA ATGTCTTTGT 89577 .......... .......... .......... .......... .......... .......... 292 CTTCATTGGA CCACATAAAT CAGAATACAC CAACTCAAGC AACTCTATCT TTCTAGAAGA 89637 .......... .......... .......... .......... .......... .......... 292 AGGGTAGGAC GTAAAAGATA TTTATTTTGT TTACCAGCCA AGCAGTGCTC ACACTTTTCT 89697 .......... .......... .......... .......... .......... .......... 292 AATTTAGCAC TTTTGAAATT TGACAAAAAT TTCTTATTGG CTAGAACATT AAGTCCTTTC 89757 .......... .......... .......... .......... .......... .......... 292 TCACTGATGT GGCTGAGTCT CTTGTGTCAT AACGTTGAGA AGTTATCGCT CTCAACTGCA 89817 ||| || ||||| || ||||||| ||||| ||| .......... .......... .......CAT AATGTTGAAG AGCTATCGCT TTCAACCGCA 325 TTCACCATAT CAACACAAGT AGATACCATA GTCAATTATA GACCACGACG TTTGTTACCA 89877 |||||||||| |||| ||| ||| || || ||| | ||| |||||||||| |||||||||| TTCACCATAT CAAC--AAGC AGAGGCCGTA GTCCAGTATT GACCACGACG TTTGTTACCA 383 CGAGCCAAAA CTAAGGAACC CTTAATGAGC TTTCATTTTC CATCATCGTT GGTACTAACA 89937 ||||||| || | |||||||| |||||||||| || ||||||| ||||| |||| |||||||||| CGAGCCACAA CCAAGGAACC CTTAATGAGC TTCCATTTTC CATCACCGTT GGTACTAACA 443 TATCTTTCAT CATCTAAAAC CCCAATAAAA ATTAGGTACA GACGAACATT AGGAGCATGT 89997 |||| ||||| |||||||||| |||| | || ||||||| || ||||||||| | |||||||| TATCCTTCAT CATCTAAAAC ACCAACAGAA ATTAGGTGCA GACGAACATC AAGAGCATGT 503 TTCATATTGT TCAAAACTAG TTTAGTTCCA ACACTAGTTT CCAAACAAAT TGTACCAATA 90057 |||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TTCACATTGT TCAAAACTAG TTTAGTTCCA ATACTAGTTT CCAAACAAAT TGTACCAATA 563 TCAACCACCC TAGAAAAAGT CTCATTACCC ATACTCAAGG TTCAAAAATC A 90108 ||||||||| |||||| ||| || |||||| |||||||||| ||| |||||| | CCAACCACCC TAGAAACAGT CTTTTTACCC ATACTCAAGG TTCCAAAATC A 614 hqPGS_C08HBa0197A05.1+_SGN-E539285- (89785 90108) ******************************************************************************** EST sequence 99 -strand 472 n (File: SGN-E284128-) 1 AAAATCAAGT CATTCCTATT GGGAAAACAC GGACAAGCAT AAAAGTATAT ATGGTAAATG 61 TAATGGAAAT AAAATGAGAA AATAACGACA CCAATAATTT TACGTGGAAG CCCTTCTGAA 121 TAAGGAAAAA AACCACNGGC CAACGAGGAG CCATAATGTT GAAGAGCTAT CGCTTTCAAC 181 CGCATTCACC ATATCAACAA GCAGAGGCCG TAGTCCAGTA TTGACCACGA CGTTTGTTAC 241 CACGAGCCAC AACCAAGGAA CCCTTAATGA GCTTCCATTT TCCATCACCG TTGGTACTAA 301 CATATCCTTC ATCATCTAAA ACACCAACAG AAATTAGGTG CAGACGAACA TCAAGAGCAT 361 GTTTCACATT GTTCAAAACT AGTTTAGTTC CAATACTAGT TTCCAAACAA ATTGTACCAA 421 TACCAACCAC CCTAGAAACA GTCTTTTTAC CCATACTCAA GGTTCCAAAA TC Predicted gene structure (within gDNA segment 87028 to 91157): Exon 1 89785 90107 ( 323 n); cDNA 152 472 ( 321 n); score: 0.898 MATCH C08HBa0197A05.1+ SGN-E284128- 0.898 323 0.684 C PGS_C08HBa0197A05.1+_SGN-E284128- (89785 90107) Alignment (genomic DNA sequence = upper lines): CATAACGTTG AGAAGTTATC GCTCTCAACT GCATTCACCA TATCAACACA AGTAGATACC 89844 ||||| |||| | || |||| ||| ||||| |||||||||| |||||||| || ||| || CATAATGTTG AAGAGCTATC GCTTTCAACC GCATTCACCA TATCAACA-- AGCAGAGGCC 209 ATAGTCAATT ATAGACCACG ACGTTTGTTA CCACGAGCCA AAACTAAGGA ACCCTTAATG 89904 ||||| | | || ||||||| |||||||||| |||||||||| ||| ||||| |||||||||| GTAGTCCAGT ATTGACCACG ACGTTTGTTA CCACGAGCCA CAACCAAGGA ACCCTTAATG 269 AGCTTTCATT TTCCATCATC GTTGGTACTA ACATATCTTT CATCATCTAA AACCCCAATA 89964 ||||| |||| |||||||| | |||||||||| ||||||| || |||||||||| ||| |||| | AGCTTCCATT TTCCATCACC GTTGGTACTA ACATATCCTT CATCATCTAA AACACCAACA 329 AAAATTAGGT ACAGACGAAC ATTAGGAGCA TGTTTCATAT TGTTCAAAAC TAGTTTAGTT 90024 ||||||||| ||||||||| || | ||||| ||||||| || |||||||||| |||||||||| GAAATTAGGT GCAGACGAAC ATCAAGAGCA TGTTTCACAT TGTTCAAAAC TAGTTTAGTT 389 CCAACACTAG TTTCCAAACA AATTGTACCA ATATCAACCA CCCTAGAAAA AGTCTCATTA 90084 |||| ||||| |||||||||| |||||||||| ||| |||||| ||||||||| ||||| ||| CCAATACTAG TTTCCAAACA AATTGTACCA ATACCAACCA CCCTAGAAAC AGTCTTTTTA 449 CCCATACTCA AGGTTCAAAA ATC 90107 |||||||||| |||||| ||| ||| CCCATACTCA AGGTTCCAAA ATC 472 hqPGS_C08HBa0197A05.1+_SGN-E284128- (89785 90107) ******************************************************************************** EST sequence 29 -strand 753 n (File: SGN-E545704-) 1 AGAAAACCCA TTTTGAGAGC AAAGTGAGGT ATTCCATAGA CTATAGAAGA AAATAGTCTG 61 TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGACGG AAACCAAAAG AGTGTTGTTC 121 CTTTAGAGTG TGTAGTAGTC ACTTTGAGTG TTGTATTCGT GACTACACAG TGTAAAATTC 181 CTTACTATAG TAATATCAGT TGCTCCTCTT GGCCCGTGGT TTTTTCCCTT ATTCAGAAGG 241 GTTTCCACGT AAAATTCTTG GTGTCGTTAT TTTCTCATTT TATTTCCATT ACTTTTACCA 301 TATATACTTT TGTGCTTGTC CGCGTTTTCC TAACAGTAGA TACATCATCT CCTGCTAAGC 361 AGAGGACGTC ACCTAATCTT ATTGATGATC ATTCTGATGC AGCGACGCCA GTGTGTTTTG 421 CAACAGCCTT CCGCCCTTAA TTTTATGGTG ATGCTTTTCA TTCTCAGAAA GTGAGGAGTT 481 TTTGCAAGAT ATTGAAATGT CCTTCTGTGT TTTGAGGATA CCCCCTGCTC TAGAAAACTG 541 GTATACTTAA GTTTAAGCAA GTCCTGCACC TTAAATTCCA CACAGCCCAT CAACGGTAAT 601 ATCTATCTAC TTAGCCTTGA GGAATGTTCA AGTTTGATTT TTCATATTGC CTATCCAATT 661 TTTTGGGCTC CGATCAATCC ACCACATTGN TTTCCACCCT TATTATTTTT GATAACCAAC 721 ATTCCTTAAA CTATTTTCTG ATCAAAAAAA AAA Predicted gene structure (within gDNA segment 92990 to 86050): Exon 1 91498 91163 ( 336 n); cDNA 1 335 ( 335 n); score: 0.902 PPA cDNA 744 753 MATCH C08HBa0197A05.1- SGN-E545704- 0.902 336 0.446 C PGS_C08HBa0197A05.1-_SGN-E545704- (91498 91163) Alignment (genomic DNA sequence = upper lines): AGAAAAACCA TTTTGAGAGC AAACTGAGGT ATT-CATAGA CTATACAAGA AAAATAGTAT 91440 |||||| ||| |||||||||| ||| |||||| ||| |||||| ||||| |||| ||| |||| | AGAAAACCCA TTTTGAGAGC AAAGTGAGGT ATTCCATAGA CTATAGAAGA AAA-TAGTCT 59 GTGAAGAAAA ATAGAGTGCG AACGATATTT TAGTAAGGTG GAAACCAAAA GAGTGTT-TT 91381 |||||||||| |||||||| | | |||||||| ||||||| | |||||||||| ||||||| || GTGAAGAAAA ATAGAGTGTG AGCGATATTT TAGTAAGACG GAAACCAAAA GAGTGTTGTT 119 CCTTTTCAGT GTGTAGTAGT CACTTTGAGT ATTGTATTCT TGACTACACA GTGTAAAATT 91321 ||||| ||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| CCTTTAGAGT GTGTAGTAGT CACTTTGAGT GTTGTATTCG TGACTACACA GTGTAAAATT 179 CCTTATTATA GTGATACCAG TTGCTCCTCT TGGCCTATGG TTTTTTTCCC TTTATTTAGA 91261 ||||| |||| || ||| ||| |||||||||| ||||| ||| ||||||||| ||||| ||| CCTTACTATA GTAATATCAG TTGCTCCTCT TGGCCCGTGG -TTTTTTCCC -TTATTCAGA 237 AGGGTTTCCA CGTAAAATTC TTGGTGTCAT TATTTTCTCA TTTTATTTCC ATTACTTTTA 91201 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| AGGGTTTCCA CGTAAAATTC TTGGTGTCGT TATTTTCTCA TTTTATTTCC ATTACTTTTA 297 CTTTATATAT TTTTGTGTTT GTCCGCATTT TCCCAACA 91163 | |||||| ||||||| || |||||| ||| ||| |||| CCATATATAC TTTTGTGCTT GTCCGCGTTT TCCTAACA 335 hqPGS_C08HBa0197A05.1-_SGN-E545704- (91498 91163) ******************************************************************************** EST sequence 94 +strand 749 n (File: SGN-E545705+) 1 AGAAAACCCA TTTTGAGAGC AAAGTGAGGT ATTCCATAGA CTATAGAAGA AAATAGTCTG 61 TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGACGG AAACCAAAAG AGTGTTGTTC 121 CTTTAGAGTG TGTAGTAGTC ACTTTGAGTG TTGTATTCGT GACTACACAG TGTAAAATTC 181 CTTACTATAG TAATATCAGT TGCTCCTCTT GGCCCGTGGT TTTTTCCCTT ATTCAGAAGG 241 GTTTCCACGT AAAATTCTTG GTGTCGTTAT TTTCTCATTT TATTTCCATT ACTTTTACCA 301 TATATACTTT TGTGCTTGTC CGCGTTTTCC TAACAGTAGA TACATCATCT CCTGCTAAGC 361 AGAGGACGTC ACCTAATCTT ATTGATGATC ATTCTGATGC AGCGACGCCA GTGTGTTTTG 421 CAACAGCCTT CCGCCCTTAA TTTTATGGTG ATGCTTTTCA TTCTCAGAAA GTGAGGAGTT 481 TTTGCAAGAT ATTGAAATGT CCTTCTGTGT TTTGAGGATA CCCCCTGCTC TAGAAAACTG 541 GTATACTTAA GTTTAAGCAA GTCCTGCACC TTAAATTCCA CACAGCCCAT CAACGGTAAT 601 ATCTATCTAC TTAGCCTTGA GGAATGTTCA AGTTTGATTT TTCATATTGC CTATCCAATT 661 TTTTGGGCTC CGATAATCCA CCACATTGTT TTCACCTTAT TATTTTTGAT AACCAACATC 721 CCTTAACTAT TTTCTGATCA AAAAAAAAA Predicted gene structure (within gDNA segment 92980 to 86080): Exon 1 91498 91163 ( 336 n); cDNA 1 335 ( 335 n); score: 0.902 PPA cDNA 740 749 MATCH C08HBa0197A05.1- SGN-E545705+ 0.902 336 0.449 C PGS_C08HBa0197A05.1-_SGN-E545705+ (91498 91163) Alignment (genomic DNA sequence = upper lines): AGAAAAACCA TTTTGAGAGC AAACTGAGGT ATT-CATAGA CTATACAAGA AAAATAGTAT 91440 |||||| ||| |||||||||| ||| |||||| ||| |||||| ||||| |||| ||| |||| | AGAAAACCCA TTTTGAGAGC AAAGTGAGGT ATTCCATAGA CTATAGAAGA AAA-TAGTCT 59 GTGAAGAAAA ATAGAGTGCG AACGATATTT TAGTAAGGTG GAAACCAAAA GAGTGTT-TT 91381 |||||||||| |||||||| | | |||||||| ||||||| | |||||||||| ||||||| || GTGAAGAAAA ATAGAGTGTG AGCGATATTT TAGTAAGACG GAAACCAAAA GAGTGTTGTT 119 CCTTTTCAGT GTGTAGTAGT CACTTTGAGT ATTGTATTCT TGACTACACA GTGTAAAATT 91321 ||||| ||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| CCTTTAGAGT GTGTAGTAGT CACTTTGAGT GTTGTATTCG TGACTACACA GTGTAAAATT 179 CCTTATTATA GTGATACCAG TTGCTCCTCT TGGCCTATGG TTTTTTTCCC TTTATTTAGA 91261 ||||| |||| || ||| ||| |||||||||| ||||| ||| ||||||||| ||||| ||| CCTTACTATA GTAATATCAG TTGCTCCTCT TGGCCCGTGG -TTTTTTCCC -TTATTCAGA 237 AGGGTTTCCA CGTAAAATTC TTGGTGTCAT TATTTTCTCA TTTTATTTCC ATTACTTTTA 91201 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| AGGGTTTCCA CGTAAAATTC TTGGTGTCGT TATTTTCTCA TTTTATTTCC ATTACTTTTA 297 CTTTATATAT TTTTGTGTTT GTCCGCATTT TCCCAACA 91163 | |||||| ||||||| || |||||| ||| ||| |||| CCATATATAC TTTTGTGCTT GTCCGCGTTT TCCTAACA 335 hqPGS_C08HBa0197A05.1-_SGN-E545705+ (91498 91163) ******************************************************************************** EST sequence 7 -strand 405 n (File: SGN-E539303-) 1 GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAGAA AATAGTGTGT 61 GAAGAATAAT AGAATGTGAG CGATATTTTA GTAAGACGGA AATCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTAGTATTCA CTTTGAGTAT TGTATTCGTG ACTACACAAT GTAAAATTCC 181 TTATTATAGT AATATCAGTT GCTCCTCTCG GCTCGTGATT TTTTCCCTTA TTCAGAAGGG 241 TTTCCACGTA AAATTCTTGG TGTCGTTATT TTCCTATTTT ATTTCCATTA TTTTTATCAT 301 ATATATTTTT GTGCTCGTCT GCGTTTTCCC AACAGACACC TCATTCATTT ATCTATTTTT 361 TTTCTTTTGT TAAAAAAAAA AAAAAAAAAC TCGAGGGGGG CCCGG Predicted gene structure (within gDNA segment 93341 to 89223): Exon 1 91497 91163 ( 335 n); cDNA 1 334 ( 334 n); score: 0.875 PPA cDNA 372 390 MATCH C08HBa0197A05.1- SGN-E539303- 0.875 335 0.827 C PGS_C08HBa0197A05.1-_SGN-E539303- (91497 91163) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA -TTCATAGAC TATACAAGAA AAATAGTATG 91439 ||||| |||| ||||||||| || ||||||| ||||||||| |||||||| | ||||||| || GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAG-A AAATAGTGTG 59 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 ||||||| || |||| || || ||||||||| |||||| || ||| |||||| |||||| ||| TGAAGAATAA TAGAATGTGA GCGATATTTT AGTAAGACGG AAATCAAAAG AGTGTTGTTC 119 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 ||||| |||| ||||||| || |||||||||| |||||||| | ||||||||| |||||||||| CTTTTGAGTG TGTAGTATTC ACTTTGAGTA TTGTATTCGT GACTACACAA TGTAAAATTC 179 CTTATTATAG TGATACCAGT TGCTCCTCTT GGCCTATGGT TTTTTTCCCT TTATTTAGAA 91260 |||||||||| | ||| |||| ||||||||| || || | ||||||||| ||||| |||| CTTATTATAG TAATATCAGT TGCTCCTCTC GG-CTCGTGA TTTTTTCCC- TTATTCAGAA 237 GGGTTTCCAC GTAAAATTCT TGGTGTCATT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 91200 |||||||||| |||||||||| ||||||| || |||||| || |||||||||| ||| ||||| GGGTTTCCAC GTAAAATTCT TGGTGTCGTT ATTTTCCTAT TTTATTTCCA TTATTTTTAT 297 TTTATATATT TTTGTGTTTG TCCGCATTTT CCCAACA 91163 |||||||| |||||| | | || || |||| ||||||| CATATATATT TTTGTGCTCG TCTGCGTTTT CCCAACA 334 hqPGS_C08HBa0197A05.1-_SGN-E539303- (91497 91163) ******************************************************************************** EST sequence 8 -strand 411 n (File: SGN-E539305-) 1 GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAGAA AATAGTGTGT 61 GAAGAATAAT AGAATGTGAG CGATATTTTA GTAAGACGGA AATCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTAGTATTCA CTTTGAGTAT TGTATTCGTG ACTACACAAT GTAAAATTCC 181 TTATTATAGT AATATCAGTT GCTCCTCTCG GCTCGTGATT TTTTCCCTTA TTCAGAAGGG 241 TTTCCACGTA AAATTCTTGG TGTCGTTATT TTCCTATTTT ATTTCCATTA TTTTTATCAT 301 ATATATTTTT GTGCTCGTCT GCGTTTTCCC AACAGACACC TCATTCATTT ATCTATTTTC 361 TTTTCTTTTG TTAAAAAAAA AAAAAAAAAA CTCGAGGGGG GCCCGTACCC A Predicted gene structure (within gDNA segment 93341 to 89163): Exon 1 91497 91163 ( 335 n); cDNA 1 334 ( 334 n); score: 0.875 PPA cDNA 373 391 MATCH C08HBa0197A05.1- SGN-E539305- 0.875 335 0.815 C PGS_C08HBa0197A05.1-_SGN-E539305- (91497 91163) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA -TTCATAGAC TATACAAGAA AAATAGTATG 91439 ||||| |||| ||||||||| || ||||||| ||||||||| |||||||| | ||||||| || GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAG-A AAATAGTGTG 59 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 ||||||| || |||| || || ||||||||| |||||| || ||| |||||| |||||| ||| TGAAGAATAA TAGAATGTGA GCGATATTTT AGTAAGACGG AAATCAAAAG AGTGTTGTTC 119 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 ||||| |||| ||||||| || |||||||||| |||||||| | ||||||||| |||||||||| CTTTTGAGTG TGTAGTATTC ACTTTGAGTA TTGTATTCGT GACTACACAA TGTAAAATTC 179 CTTATTATAG TGATACCAGT TGCTCCTCTT GGCCTATGGT TTTTTTCCCT TTATTTAGAA 91260 |||||||||| | ||| |||| ||||||||| || || | ||||||||| ||||| |||| CTTATTATAG TAATATCAGT TGCTCCTCTC GG-CTCGTGA TTTTTTCCC- TTATTCAGAA 237 GGGTTTCCAC GTAAAATTCT TGGTGTCATT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 91200 |||||||||| |||||||||| ||||||| || |||||| || |||||||||| ||| ||||| GGGTTTCCAC GTAAAATTCT TGGTGTCGTT ATTTTCCTAT TTTATTTCCA TTATTTTTAT 297 TTTATATATT TTTGTGTTTG TCCGCATTTT CCCAACA 91163 |||||||| |||||| | | || || |||| ||||||| CATATATATT TTTGTGCTCG TCTGCGTTTT CCCAACA 334 hqPGS_C08HBa0197A05.1-_SGN-E539305- (91497 91163) ******************************************************************************** EST sequence 48 +strand 382 n (File: SGN-E539306+) 1 GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAGAA AATAGTGTGT 61 GAAGAATAAT AGAATGTGAG CGATATTTTA GTAAGACGGA AATCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTAGTATTCA CTTTGAGTAT TGTATTCGTG ACTACACAAT GTAAAATTCC 181 TTATTATAGT AATATCAGTT GCTCCTCTCG GCTCGTGATT TTTTCCCTTA TTCAGAAGGG 241 TTTCCACGTA AAATTCTTGG TGTCGTTATT TTCCTATTTT ATTTCCATTA TTTTTATCAT 301 ATATATTTTT GTGCTCGTCT GCGTTTTCCC AACAGACACC TCATTCATTT ATCTATTTTC 361 TTTTCTTTTG TTAAAAAAAA AA Predicted gene structure (within gDNA segment 93331 to 89443): Exon 1 91497 91163 ( 335 n); cDNA 1 334 ( 334 n); score: 0.875 PPA cDNA 373 382 MATCH C08HBa0197A05.1- SGN-E539306+ 0.875 335 0.877 C PGS_C08HBa0197A05.1-_SGN-E539306+ (91497 91163) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA -TTCATAGAC TATACAAGAA AAATAGTATG 91439 ||||| |||| ||||||||| || ||||||| ||||||||| |||||||| | ||||||| || GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAG-A AAATAGTGTG 59 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 ||||||| || |||| || || ||||||||| |||||| || ||| |||||| |||||| ||| TGAAGAATAA TAGAATGTGA GCGATATTTT AGTAAGACGG AAATCAAAAG AGTGTTGTTC 119 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 ||||| |||| ||||||| || |||||||||| |||||||| | ||||||||| |||||||||| CTTTTGAGTG TGTAGTATTC ACTTTGAGTA TTGTATTCGT GACTACACAA TGTAAAATTC 179 CTTATTATAG TGATACCAGT TGCTCCTCTT GGCCTATGGT TTTTTTCCCT TTATTTAGAA 91260 |||||||||| | ||| |||| ||||||||| || || | ||||||||| ||||| |||| CTTATTATAG TAATATCAGT TGCTCCTCTC GG-CTCGTGA TTTTTTCCC- TTATTCAGAA 237 GGGTTTCCAC GTAAAATTCT TGGTGTCATT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 91200 |||||||||| |||||||||| ||||||| || |||||| || |||||||||| ||| ||||| GGGTTTCCAC GTAAAATTCT TGGTGTCGTT ATTTTCCTAT TTTATTTCCA TTATTTTTAT 297 TTTATATATT TTTGTGTTTG TCCGCATTTT CCCAACA 91163 |||||||| |||||| | | || || |||| ||||||| CATATATATT TTTGTGCTCG TCTGCGTTTT CCCAACA 334 hqPGS_C08HBa0197A05.1-_SGN-E539306+ (91497 91163) ******************************************************************************** EST sequence 49 +strand 382 n (File: SGN-E539307+) 1 GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAGAA AATAGTGTGT 61 GAAGAATAAT AGAATGTGAG CGATATTTTA GTAAGACGGA AATCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTAGTATTCA CTTTGAGTAT TGTATTCGTG ACTACACAAT GTAAAATTCC 181 TTATTATAGT AATATCAGTT GCTCCTCTCG GCTCGTGATT TTTTCCCTTA TTCAGAAGGG 241 TTTCCACGTA AAATTCTTGG TGTCGTTATT TTCCTATTTT ATTTCCATTA TTTTTATCAT 301 ATATATTTTT GTGCTCGTCT GCGTTTTCCC AACAGACACC TCATTCATTT ATCTATTTTC 361 TTTTCTTTTG TTAAAAAAAA AA Predicted gene structure (within gDNA segment 93331 to 89443): Exon 1 91497 91163 ( 335 n); cDNA 1 334 ( 334 n); score: 0.875 PPA cDNA 373 382 MATCH C08HBa0197A05.1- SGN-E539307+ 0.875 335 0.877 C PGS_C08HBa0197A05.1-_SGN-E539307+ (91497 91163) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA -TTCATAGAC TATACAAGAA AAATAGTATG 91439 ||||| |||| ||||||||| || ||||||| ||||||||| |||||||| | ||||||| || GAAAATCCAT GTTGAGAGCA AAGTGAGGTA TTTCATAGAC TATACAAG-A AAATAGTGTG 59 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 ||||||| || |||| || || ||||||||| |||||| || ||| |||||| |||||| ||| TGAAGAATAA TAGAATGTGA GCGATATTTT AGTAAGACGG AAATCAAAAG AGTGTTGTTC 119 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 ||||| |||| ||||||| || |||||||||| |||||||| | ||||||||| |||||||||| CTTTTGAGTG TGTAGTATTC ACTTTGAGTA TTGTATTCGT GACTACACAA TGTAAAATTC 179 CTTATTATAG TGATACCAGT TGCTCCTCTT GGCCTATGGT TTTTTTCCCT TTATTTAGAA 91260 |||||||||| | ||| |||| ||||||||| || || | ||||||||| ||||| |||| CTTATTATAG TAATATCAGT TGCTCCTCTC GG-CTCGTGA TTTTTTCCC- TTATTCAGAA 237 GGGTTTCCAC GTAAAATTCT TGGTGTCATT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 91200 |||||||||| |||||||||| ||||||| || |||||| || |||||||||| ||| ||||| GGGTTTCCAC GTAAAATTCT TGGTGTCGTT ATTTTCCTAT TTTATTTCCA TTATTTTTAT 297 TTTATATATT TTTGTGTTTG TCCGCATTTT CCCAACA 91163 |||||||| |||||| | | || || |||| ||||||| CATATATATT TTTGTGCTCG TCTGCGTTTT CCCAACA 334 hqPGS_C08HBa0197A05.1-_SGN-E539307+ (91497 91163) ******************************************************************************** EST sequence 88 +strand 525 n (File: SGN-E312478+) 1 GAAAACCCAT TTTGAGAGCA AAGTGAGGTG TGCCATAGAG TATAGAAGAA AATAGTCTGT 61 GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGACGGA AACCAAAAGA GTGTTGTTCC 121 TTTAGAGTGT GTAGTAGTCA CTTTGAGTGT TGTATTCGTG ACTACACAGT GTAAAATTCC 181 TTACTATAGT AATATCAGTT GCTCCTCTTG GCCCGTGGTT TTTTCCCTTA TTCAGAAGGG 241 TTTCCACGTA AAATTCTTGG TGTCGTTATT TTCTCATTTT ATTTCCATTA CTTTTACCAT 301 ATATACTTTT GTGCTTGTCC GCGTTTTCCT AACAGTAGAT ACATCATCTC CTGCTAAGCA 361 GAGGACGTCA CCTAATCTTA TTGATGATCA TTCTGATGCA GCGACGCCAG TGTGTTTTGC 421 AACAGCCTTC CGCCCTTAAT TTTATGGTGA TGCTTTTCAT TCTCAGAAAG TGAGGAGTTT 481 TTGCAAGATA TTGAAATGTC CTTCTGTGTT TTGAGGATAC CCCCT Predicted gene structure (within gDNA segment 92970 to 88310): Exon 1 91497 91163 ( 335 n); cDNA 1 334 ( 334 n); score: 0.893 MATCH C08HBa0197A05.1- SGN-E312478+ 0.893 335 0.638 C PGS_C08HBa0197A05.1-_SGN-E312478+ (91497 91163) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA T-TCATAGAC TATACAAGAA AAATAGTATG 91439 ||||| |||| |||||||||| || |||||| | |||||| |||| ||| | ||||||| || GAAAACCCAT TTTGAGAGCA AAGTGAGGTG TGCCATAGAG TATAGAAG-A AAATAGTCTG 59 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 |||||||||| ||||||| || ||||||||| |||||| || |||||||||| |||||| ||| TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGACGG AAACCAAAAG AGTGTTGTTC 119 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 |||| |||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| CTTTAGAGTG TGTAGTAGTC ACTTTGAGTG TTGTATTCGT GACTACACAG TGTAAAATTC 179 CTTATTATAG TGATACCAGT TGCTCCTCTT GGCCTATGGT TTTTTTCCCT TTATTTAGAA 91260 |||| ||||| | ||| |||| |||||||||| |||| ||| ||||||||| ||||| |||| CTTACTATAG TAATATCAGT TGCTCCTCTT GGCCCGTGG- TTTTTTCCC- TTATTCAGAA 237 GGGTTTCCAC GTAAAATTCT TGGTGTCATT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 91200 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GGGTTTCCAC GTAAAATTCT TGGTGTCGTT ATTTTCTCAT TTTATTTCCA TTACTTTTAC 297 TTTATATATT TTTGTGTTTG TCCGCATTTT CCCAACA 91163 |||||| | |||||| ||| ||||| |||| || |||| CATATATACT TTTGTGCTTG TCCGCGTTTT CCTAACA 334 hqPGS_C08HBa0197A05.1-_SGN-E312478+ (91497 91163) ******************************************************************************** EST sequence 101 +strand 381 n (File: SGN-E283859+) 1 AAAATCCATG TTGAGAGCAA AGTGAGGTAT TTCATAGACT ATACAAGAAA ATAGTGTGTG 61 AAGAATAATA GAATGTGAGC GATATTTTAG TAAGACGGAA ATCAAAAGAG TGTTGTTCCT 121 TTTGAGTGTG TAGTATTCAC TTTGAGTATT GTATTCGTGA CTACACAATG TAAAATTCCT 181 TATTATAGTA ATATCAGTTG CTCCTCTCGG CTCGTGATTT TTTCCCTTAT TCAGAAGGGT 241 TTCCACGTAA AATTCTTGGT GTCGTTATTT TCCTATTTTA TTTCCATTAT TTTTATCATA 301 TATATTTTTG TGCTCGTCTG CGTTTTCCCA ACAGACACCT CATTCATTTA TCTATTTTCT 361 TTTCTTTTGT TAAAAAAAAA A Predicted gene structure (within gDNA segment 93321 to 89443): Exon 1 91496 91163 ( 334 n); cDNA 1 333 ( 333 n); score: 0.874 PPA cDNA 372 381 MATCH C08HBa0197A05.1- SGN-E283859+ 0.874 334 0.877 C PGS_C08HBa0197A05.1-_SGN-E283859+ (91496 91163) Alignment (genomic DNA sequence = upper lines): AAAAACCATT TTGAGAGCAA ACTGAGGTA- TTCATAGACT ATACAAGAAA AATAGTATGT 91438 |||| |||| |||||||||| | ||||||| |||||||||| ||||||| || |||||| ||| AAAATCCATG TTGAGAGCAA AGTGAGGTAT TTCATAGACT ATACAAG-AA AATAGTGTGT 59 GAAGAAAAAT AGAGTGCGAA CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTT-TTCC 91379 |||||| ||| ||| || || |||||||||| ||||| ||| || ||||||| ||||| |||| GAAGAATAAT AGAATGTGAG CGATATTTTA GTAAGACGGA AATCAAAAGA GTGTTGTTCC 119 TTTTCAGTGT GTAGTAGTCA CTTTGAGTAT TGTATTCTTG ACTACACAGT GTAAAATTCC 91319 |||| ||||| |||||| ||| |||||||||| ||||||| || |||||||| | |||||||||| TTTTGAGTGT GTAGTATTCA CTTTGAGTAT TGTATTCGTG ACTACACAAT GTAAAATTCC 179 TTATTATAGT GATACCAGTT GCTCCTCTTG GCCTATGGTT TTTTTCCCTT TATTTAGAAG 91259 |||||||||| ||| ||||| |||||||| | | || | | |||||||| | |||| ||||| TTATTATAGT AATATCAGTT GCTCCTCTCG G-CTCGTGAT TTTTTCCC-T TATTCAGAAG 237 GGTTTCCACG TAAAATTCTT GGTGTCATTA TTTTCTCATT TTATTTCCAT TACTTTTACT 91199 |||||||||| |||||||||| |||||| ||| ||||| ||| |||||||||| || ||||| GGTTTCCACG TAAAATTCTT GGTGTCGTTA TTTTCCTATT TTATTTCCAT TATTTTTATC 297 TTATATATTT TTGTGTTTGT CCGCATTTTC CCAACA 91163 ||||||||| ||||| | || | || ||||| |||||| ATATATATTT TTGTGCTCGT CTGCGTTTTC CCAACA 333 hqPGS_C08HBa0197A05.1-_SGN-E283859+ (91496 91163) ******************************************************************************** EST sequence 96 +strand 453 n (File: SGN-E311797+) 1 AACCATTTTG AGAGCAAAGT GAGGTATTCC ATAGACTATA CAAGTAAATA GTCTGTGAAG 61 AAAAATAGAG TGTGAGCGAT ATTTTAGTAA GACGGAAACC AAAAGAGTGT TGTTCCTTTT 121 GAGTGTGTAG TAGTCACTTT GAGTATTGTA TTCGTGACTA CACAGTGTAA AATTCCTTAG 181 TATAGTAATA TCAATTGCTC CTCTTGGCCC GTGGTTTTTT CCCTTATTCA GAAGGGTTTC 241 CACGTAAAAT TTTTGGTGTC GTTATTTTCC CATTTTATTT CTATTACTTT TACCATATAT 301 ATTTTTGTGC TCGTCCGCGT TTTTCCAACA CCAAAGGGGT CATATGAGCG GATGCAGCAG 361 AGTAAAATAC CAAGTCTGGT CATTTGCTTC GCCAGCAGAC ATAGTAGCAA AAGACTTTGG 421 AAGATCATTA GCAACGAAAG CATGATTAAA AAG Predicted gene structure (within gDNA segment 92930 to 87966): Exon 1 91493 91163 ( 331 n); cDNA 1 330 ( 330 n); score: 0.897 MATCH C08HBa0197A05.1- SGN-E311797+ 0.897 331 0.731 C PGS_C08HBa0197A05.1-_SGN-E311797+ (91493 91163) Alignment (genomic DNA sequence = upper lines): AACCATTTTG AGAGCAAACT GAGGTATT-C ATAGACTATA CAAGAAAAAT AGTATGTGAA 91435 |||||||||| |||||||| | |||||||| | |||||||||| |||| |||| ||| |||||| AACCATTTTG AGAGCAAAGT GAGGTATTCC ATAGACTATA CAAG-TAAAT AGTCTGTGAA 59 GAAAAATAGA GTGCGAACGA TATTTTAGTA AGGTGGAAAC CAAAAGAGTG TT-TTCCTTT 91376 |||||||||| ||| || ||| |||||||||| || |||||| |||||||||| || ||||||| GAAAAATAGA GTGTGAGCGA TATTTTAGTA AGACGGAAAC CAAAAGAGTG TTGTTCCTTT 119 TCAGTGTGTA GTAGTCACTT TGAGTATTGT ATTCTTGACT ACACAGTGTA AAATTCCTTA 91316 | |||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGAGTGTGTA GTAGTCACTT TGAGTATTGT ATTCGTGACT ACACAGTGTA AAATTCCTTA 179 TTATAGTGAT ACCAGTTGCT CCTCTTGGCC TATGGTTTTT TTCCCTTTAT TTAGAAGGGT 91256 |||||| || | || ||||| |||||||||| ||| |||| ||||| |||| | |||||||| GTATAGTAAT ATCAATTGCT CCTCTTGGCC CGTGG-TTTT TTCCC-TTAT TCAGAAGGGT 237 TTCCACGTAA AATTCTTGGT GTCATTATTT TCTCATTTTA TTTCCATTAC TTTTACTTTA 91196 |||||||||| |||| ||||| ||| |||||| || ||||||| |||| ||||| |||||| || TTCCACGTAA AATTTTTGGT GTCGTTATTT TCCCATTTTA TTTCTATTAC TTTTACCATA 297 TATATTTTTG TGTTTGTCCG CATTTTCCCA ACA 91163 |||||||||| || | ||||| | |||| ||| ||| TATATTTTTG TGCTCGTCCG CGTTTTTCCA ACA 330 hqPGS_C08HBa0197A05.1-_SGN-E311797+ (91493 91163) ******************************************************************************** EST sequence 87 +strand 474 n (File: SGN-E312601+) 1 AGCAAAGTGA GGTATTCCAT AGACTATAGA AGAAAATAGT CTGTGAAGAA AAATAGAGTG 61 TGAGCGATAT TTTAGTAAGA CGGAAACCAA AAGAGTGTTG TTCCTTTAGA GTGTGTAGTA 121 GTCACTTTGA GTGTTGTATT CGTGACTACA CAGTGTAAAA TTCCTTACTA TAGTAATATC 181 AGTTGCTCCT CTTGGCCCGT GGTTTTTTCC CTTATTCAGA AGGGTTTCCA CGTAAAATTC 241 TTGGTGTCGT TATTTTCTCA TTTTATTTCC ATTACTTTTA CCATATATAC TTTTGTGCTT 301 GTCCGCGTTT TCCTAACAGT AGATACATCA TCTCCTGCTA AGCAGAGGAC GTCACCTAAT 361 CTTATTGATG ATCATTCTGA TGCAGCGACG CCAGTGTGTT TTGCAACAGC CTTCCGCCCT 421 TAATTTTATG GTGATGCTTT TCATTCTCAG AAAGTGAGGA GTTTTTGCAA GATA Predicted gene structure (within gDNA segment 92810 to 88660): Exon 1 91481 91163 ( 319 n); cDNA 1 318 ( 318 n); score: 0.900 MATCH C08HBa0197A05.1- SGN-E312601+ 0.900 319 0.673 C PGS_C08HBa0197A05.1-_SGN-E312601+ (91481 91163) Alignment (genomic DNA sequence = upper lines): AGCAAACTGA GGTATT-CAT AGACTATACA AGAAAAATAG TATGTGAAGA AAAATAGAGT 91423 |||||| ||| |||||| ||| |||||||| | || ||||||| | |||||||| |||||||||| AGCAAAGTGA GGTATTCCAT AGACTATAGA AG-AAAATAG TCTGTGAAGA AAAATAGAGT 59 GCGAACGATA TTTTAGTAAG GTGGAAACCA AAAGAGTGTT -TTCCTTTTC AGTGTGTAGT 91364 | || ||||| |||||||||| |||||||| |||||||||| ||||||| |||||||||| GTGAGCGATA TTTTAGTAAG ACGGAAACCA AAAGAGTGTT GTTCCTTTAG AGTGTGTAGT 119 AGTCACTTTG AGTATTGTAT TCTTGACTAC ACAGTGTAAA ATTCCTTATT ATAGTGATAC 91304 |||||||||| ||| |||||| || ||||||| |||||||||| |||||||| | ||||| ||| AGTCACTTTG AGTGTTGTAT TCGTGACTAC ACAGTGTAAA ATTCCTTACT ATAGTAATAT 179 CAGTTGCTCC TCTTGGCCTA TGGTTTTTTT CCCTTTATTT AGAAGGGTTT CCACGTAAAA 91244 |||||||||| |||||||| ||| |||||| ||| ||||| |||||||||| |||||||||| CAGTTGCTCC TCTTGGCCCG TGG-TTTTTT CCC-TTATTC AGAAGGGTTT CCACGTAAAA 237 TTCTTGGTGT CATTATTTTC TCATTTTATT TCCATTACTT TTACTTTATA TATTTTTGTG 91184 |||||||||| | |||||||| |||||||||| |||||||||| |||| |||| || ||||||| TTCTTGGTGT CGTTATTTTC TCATTTTATT TCCATTACTT TTACCATATA TACTTTTGTG 297 TTTGTCCGCA TTTTCCCAAC A 91163 |||||||| |||||| ||| | CTTGTCCGCG TTTTCCTAAC A 318 hqPGS_C08HBa0197A05.1-_SGN-E312601+ (91481 91163) ******************************************************************************** EST sequence 50 +strand 276 n (File: SGN-E539323+) 1 GAAAAACCAT TTTGAGAACA AAGTGAGGTA TTCCATAAAC TATACAAGAA AAATAATCTA 61 TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTTGTTC 121 CTTTTGAGTG TGTATTAGTT ACTTTGAGTA TTGTATTCGT GACTACACAG TTTAAAATTC 181 TTTACTATAT TAATATCAGT TGCTCCTCTT GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 241 AACACAAGGG GGAGGACAAA AACAAAAATT CCTCCA Predicted gene structure (within gDNA segment 92440 to 89173): Exon 1 91497 91289 ( 209 n); cDNA 1 211 ( 211 n); score: 0.890 PPA cDNA 226 244 MATCH C08HBa0197A05.1- SGN-E539323+ 0.890 209 0.757 C PGS_C08HBa0197A05.1-_SGN-E539323+ (91497 91289) Alignment (genomic DNA sequence = upper lines): GAAAAACCAT TTTGAGAGCA AACTGAGGTA TT-CATAGAC TATACAAGAA AAATAGTATG 91439 |||||||||| ||||||| || || ||||||| || |||| || |||||||||| ||||| | | GAAAAACCAT TTTGAGAACA AAGTGAGGTA TTCCATAAAC TATACAAGAA AAATAATCTA 60 TGAAGAAAAA TAGAGTGCGA ACGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTT-TTC 91380 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||| ||| TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTTGTTC 120 CTTTTCAGTG TGTAGTAGTC ACTTTGAGTA TTGTATTCTT GACTACACAG TGTAAAATTC 91320 ||||| |||| |||| |||| |||||||||| |||||||| | |||||||||| | |||||||| CTTTTGAGTG TGTATTAGTT ACTTTGAGTA TTGTATTCGT GACTACACAG TTTAAAATTC 180 CTTATTATAG TGATACCAGT TGCTCCTCTT G 91289 ||| |||| | ||| |||| |||||||||| | TTTACTATAT TAATATCAGT TGCTCCTCTT G 211 hqPGS_C08HBa0197A05.1-_SGN-E539323+ (91497 91289) ******************************************************************************** EST sequence 102 +strand 208 n (File: SGN-E283948+) 1 AAAAACCATT TTGAGAACAA AGTGAGGTAT TCCATAAACT ATACAAGAAA AATAATCTAT 61 GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTATTAGTTA CTTTGAGTAT TGTATTCGTG ACTACACAGT TTAAAACTCT 181 TTACTATATT AATATCAGTT GCTCCTCT Predicted gene structure (within gDNA segment 92430 to 89843): Exon 1 91496 91291 ( 206 n); cDNA 1 208 ( 208 n); score: 0.883 MATCH C08HBa0197A05.1- SGN-E283948+ 0.883 206 0.990 C PGS_C08HBa0197A05.1-_SGN-E283948+ (91496 91291) Alignment (genomic DNA sequence = upper lines): AAAAACCATT TTGAGAGCAA ACTGAGGTAT T-CATAGACT ATACAAGAAA AATAGTATGT 91438 |||||||||| |||||| ||| | |||||||| | |||| ||| |||||||||| |||| | | | AAAAACCATT TTGAGAACAA AGTGAGGTAT TCCATAAACT ATACAAGAAA AATAATCTAT 60 GAAGAAAAAT AGAGTGCGAA CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTT-TTCC 91379 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ||||| |||| GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTGTTCC 120 TTTTCAGTGT GTAGTAGTCA CTTTGAGTAT TGTATTCTTG ACTACACAGT GTAAAATTCC 91319 |||| ||||| ||| |||| | |||||||||| ||||||| || |||||||||| ||||| || TTTTGAGTGT GTATTAGTTA CTTTGAGTAT TGTATTCGTG ACTACACAGT TTAAAACTCT 180 TTATTATAGT GATACCAGTT GCTCCTCT 91291 ||| |||| | ||| ||||| |||||||| TTACTATATT AATATCAGTT GCTCCTCT 208 hqPGS_C08HBa0197A05.1-_SGN-E283948+ (91496 91291) ******************************************************************************** EST sequence 57 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 95234 to 87415): Exon 1 93436 93115 ( 322 n); cDNA 110 427 ( 318 n); score: 0.904 Intron 1 93114 92628 ( 487 n); Pd: 0.966 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 92627 92614 ( 14 n); cDNA 428 441 ( 14 n); score: 0.786 Intron 2 92613 88806 (3808 n); Pd: 0.664 (s: 0), Pa: 0.000 (s: 0) Exon 3 88805 88781 ( 25 n); cDNA 442 467 ( 26 n); score: 0.620 PPA cDNA 12 1 MATCH C08HBa0197A05.1- SGN-E540411+ 0.904 361 0.421 C PGS_C08HBa0197A05.1-_SGN-E540411+ (93436 93115,92627 92614,88805 88781) Alignment (genomic DNA sequence = upper lines): AAGGGATAAT GTACAAGTAC CCCCTCAACC TATGCCCGAA ATCTCAGAGA CACACTTATA 93377 |||||||||| | |||||||| |||||||||| |||||||||| || |||||| |||||||||| AAGGGATAAT GCACAAGTAC CCCCTCAACC TATGCCCGAA ATTCCAGAGA CACACTTATA 169 CTATACTAAG GTCTTATTAC ACCCCTTAAC TTATTTTACA AGTAATTTTC TACCCCTTTT 93317 |||||||||| ||| |||||| ||||| ||| |||||||| | |||||||||| |||||||||| CTATACTAAG GTCCTATTAC CCCCCTGAAC TTATTTTATA AGTAATTTTC TACCCCTTTT 229 TAGCCTACGT GGAACTAGTT TGAAAAAAAA GTCAACCATC GTTGGGCCCA CAAGATAATG 93257 |||||||||| || ||||||| | |||||||| |||||| | | ||||||||| ||||||| || TAGCCTACGT GGCACTAGTT TAAAAAAAAA GTCAACAACC ATTGGGCCCA CAAGATAGTG 289 CCACGTAGGT CGAAAAGGGG TAAAAAATTA TTAATAAAAT AAGTTCAGGG GGGGTAATAG 93197 |||||||||| | |||||||| |||||||||| ||||| |||| ||||||| | ||||||||| CCACGTAGGT CTAAAAGGGG TAAAAAATTA TTAAT-AAAT AAGTTCA--G GGGGTAATAA 346 GACCTTAGTG TAGTATAAGT GTGTCTCTGA GATTTCGGGC ATAGGTTAAG AGGGTACTTG 93137 || |||||| | |||||||| || ||||||| ||||| || | ||||| |||| ||||||||| GATCTTAGTA TGGTATAAGT GTATCTCTGA GATTTTGGAC ATAGGCTAAG GGGGTACTTG 406 GGCATTATCC CAAAAAGGAA AGGTAATTCT TGTTTTTATG AAATAAGTTC TGTAAGAAAG 93077 | |||||||| ||| || || | GACATTATCC CAACAA-TAA AT........ .......... .......... .......... 427 TCAAAAGTGC TTGGATAGGT ATGGTTTCTA CTAACTTTTG AAAAGCTTCT ATTACTTTAA 93017 .......... .......... .......... .......... .......... .......... 427 GTGTCTAAAA CCTATGTAAT ATGCAAAGAT GAATGACAAA AAAAATTATT GCTGAACCTT 92957 .......... .......... .......... .......... .......... .......... 427 ATATTTTCTC TAAAGTTTCA AATACTAACC GTGATATCAA AAGGACTTTT TCTTAAGGGA 92897 .......... .......... .......... .......... .......... .......... 427 TCTGTGAAGG TAAAGAAATA AGGTTTTCTT CAATTCTTCT AAAGTGAGTG AGCTAGCAAC 92837 .......... .......... .......... .......... .......... .......... 427 AGTAACATGT TATCTACCAA CTTTTTGGGT GCAGGCCCTC CCATGTTTAC AGGAGAAATT 92777 .......... .......... .......... .......... .......... .......... 427 TACCACATAT GGATGCTAAA GATGAAGGCT TATCTCAAAG CTCTTAGTTT ATGGGAAACA 92717 .......... .......... .......... .......... .......... .......... 427 GTTTAAAGTT ACGATGAGCC TCCTCCCCTT GGGCCAAATC CAATAGTTGC ACAAATGAAG 92657 .......... .......... .......... .......... .......... .......... 427 ATTTACCAAG ATGCAAAGTC AAGGAAATCA AAGAATCTCA CATGTCACCA TTCAACACTT 92597 | ||| || | | ||| .......... .......... .........A AAGGATATAA CAT....... .......... 441 TCAGATGTGA TTTCCATAAA AATAATATCT TGTGAAACAG TTAAAGAAGC ATAGGAGAAG 92537 .......... .......... .......... .......... .......... .......... 441 ATAAAAGAAG ATTCCCACAG AAGTGAGAGA GTGAAGATTG TCAAACTTTT AACTCTCAAA 92477 .......... .......... .......... .......... .......... .......... 441 AGAGAATTTG AGATGATAAG GATGGAATAA GGACATACTG TAAAAGAGTA TTCTGAAAAA 92417 .......... .......... .......... .......... .......... .......... 441 CTTGTGGATA TTGTTAGCAA AATAAGGTTG TTAGGTAAAA CCTTTCTCGA TTTAAAGGTG 92357 .......... .......... .......... .......... .......... .......... 441 ATGGAGAAGA TGATGATAAG ATTACCAACA AAGTTTGAGT CAAAGATTTG ACCTATAGAA 92297 .......... .......... .......... .......... .......... .......... 441 AAATCTTGTG ATTTTAAGAC TTGATCTATT GCGGAACCGA TCAACAAGTT GCAAGCCCAA 92237 .......... .......... .......... .......... .......... .......... 441 GAACAAAGAT TAAGTATAAG AGATAAGAAA TAATAGAGTG GAATTTTAGG CACAACATAA 92177 .......... .......... .......... .......... .......... .......... 441 ATGCAAGCAA CTTATGAAAA ACAATAGAAG GATGGAAGGA GATAAAGTAG CAAATAAAAA 92117 .......... .......... .......... .......... .......... .......... 441 TGTCACGCCC CAAATTAGTT CTGTGATCGG TGCTAAGGGG AATGAATCCC AAAGCAAGCC 92057 .......... .......... .......... .......... .......... .......... 441 TTAACATAAA TCTATAGAAA ATCTGGCATA GTTTTCTTTG TTTTAGGCCT ATCCTGAATT 91997 .......... .......... .......... .......... .......... .......... 441 TTCCTTGCCT CACTATCAAC CACAACATAG TATACATCAA TGATCTAATT ATCACACAAT 91937 .......... .......... .......... .......... .......... .......... 441 AAAACCAATT CATCTCCAAA TTATGAAAAA GAAGTTCCAA ACTAGTCACT TGACTACAAT 91877 .......... .......... .......... .......... .......... .......... 441 ACGAAGGACT ATAATGATGA CTCAAATCAA AGGAATGACA AATGGAATTA CTCTATGGGT 91817 .......... .......... .......... .......... .......... .......... 441 TATTAAAGAA ACTAAATAAA CCATATTGAA TCAATAGTTC TCTTTGTGGG GTCCATACCC 91757 .......... .......... .......... .......... .......... .......... 441 ATTGTAGATA AACACAATGA GAACTAAAAT GCAGAAAATG TTGGATTAAT GTTTGTTGCT 91697 .......... .......... .......... .......... .......... .......... 441 CATTGTTAAG AGTCAACAAA TGCTACAACA AGCCAAAGCT CACTATTTCT TTTTCAACGA 91637 .......... .......... .......... .......... .......... .......... 441 AAATCTTACC AAGAAATCTT CATAGGTGCA AAGGTTGAAA TCTTGTGTTT TTGTGATGTC 91577 .......... .......... .......... .......... .......... .......... 441 ACTGGTGACA TCATTATGAG TAGATTTCTC CTATAAATAC AGAGCCCTTG CTCGTTTCAA 91517 .......... .......... .......... .......... .......... .......... 441 AAATACACCA AATTAGATAG AAAAACCATT TTGAGAGCAA ACTGAGGTAT TCATAGACTA 91457 .......... .......... .......... .......... .......... .......... 441 TACAAGAAAA ATAGTATGTG AAGAAAAATA GAGTGCGAAC GATATTTTAG TAAGGTGGAA 91397 .......... .......... .......... .......... .......... .......... 441 ACCAAAAGAG TGTTTTCCTT TTCAGTGTGT AGTAGTCACT TTGAGTATTG TATTCTTGAC 91337 .......... .......... .......... .......... .......... .......... 441 TACACAGTGT AAAATTCCTT ATTATAGTGA TACCAGTTGC TCCTCTTGGC CTATGGTTTT 91277 .......... .......... .......... .......... .......... .......... 441 TTTCCCTTTA TTTAGAAGGG TTTCCACGTA AAATTCTTGG TGTCATTATT TTCTCATTTT 91217 .......... .......... .......... .......... .......... .......... 441 ATTTCCATTA CTTTTACTTT ATATATTTTT GTGTTTGTCC GCATTTTCCC AACAAACTGG 91157 .......... .......... .......... .......... .......... .......... 441 TATTAGAGCC AAGGTTTATT TGAGTATGAT AGGTGGTTGC AGCACAACCT GAACTTCCAC 91097 .......... .......... .......... .......... .......... .......... 441 ATCAGAAAAA ATTTACTTTG ATTTGCGATA ATAATATTTA TTCGAGAAAA ATAATGAAAG 91037 .......... .......... .......... .......... .......... .......... 441 CCAAAACAAA CAGAATTGTT ACTTTGAATG ATGTTAATTA TGCCATTTTG AAGGGGAAAA 90977 .......... .......... .......... .......... .......... .......... 441 TGGAAGTTCT TCTTTATGTC AAGAACTTTT ACAAACCAGT ATTTACCACT GTAAAGTCTG 90917 .......... .......... .......... .......... .......... .......... 441 ATAATAAAAC AGATGAAGGG TGGAATCTGT TACACAAACA GGTTTGTGGA TTCATTAGGC 90857 .......... .......... .......... .......... .......... .......... 441 AATGGGTCGA CGATAATGTG TTGAACCATA TTTCTGGGGA AACATATGCT CGAATCCTAT 90797 .......... .......... .......... .......... .......... .......... 441 GAGAGCATCT TGAAAGTTCG TATGCTTAGA AAACTGTCAA TAACAAAATG TTCTTAATAA 90737 .......... .......... .......... .......... .......... .......... 441 AGCTAATGTT GAGTTTAAAA TATTATGATG GTTCTCCGAT GATAGACCAT CTGAATAATT 90677 .......... .......... .......... .......... .......... .......... 441 TTCAGGGGAT CATGAATCAA TTATCTGCTA TAGGCATCAA ATTTGATGAA GAAATTCAAG 90617 .......... .......... .......... .......... .......... .......... 441 GCTTACTTTT ACTTGGTTCC CTACCAGACT CTTGGGAAAC ATTTAGAACT TCATTGTCAA 90557 .......... .......... .......... .......... .......... .......... 441 ATTTTGCTCC GGATGGTGTG ATCTCTATGG ATTCCGCCAA GAGTAGTGTC TTGAACGAAG 90497 .......... .......... .......... .......... .......... .......... 441 ATATAAGAAG AAAACTCAAG GTTCTTCTTC GTAGGATGCC GTGATAACTG GCCCTAGGGG 90437 .......... .......... .......... .......... .......... .......... 441 GAGAACAAAA ATCATGGTTC TCAATATAGA GAACAAAATA GGAGCAAATT TAGAGGAAGA 90377 .......... .......... .......... .......... .......... .......... 441 CTTAAGGATA TTGAGTGCTA TCATTGTGTC ATGAAAAAGC ACACAAAGAG TTCTGCAGGA 90317 .......... .......... .......... .......... .......... .......... 441 ATTTGAAGAG GGAGAACAAA AACAAAGAGT AAACTAAGGA AGATGGAAAT GAAAATTGCC 90257 .......... .......... .......... .......... .......... .......... 441 TGGCCACCGT TACCACCAAA GATCTTGTTA CTGTCCTTGA TGGGGATATG ATACATATTG 90197 .......... .......... .......... .......... .......... .......... 441 CTTGTGATGA GTCAATCTGG GTTGTGGACA CTGGTGCCAT ATCTCATGTG ACATCACGAA 90137 .......... .......... .......... .......... .......... .......... 441 AGGATTTTTT CTCTTTCTAT ACTCTTGGTG ATTTTTGAAC CTTGAGTATG GGTAATGAGA 90077 .......... .......... .......... .......... .......... .......... 441 CTTTTTCTAG GGTGGTTGAT ATTGGTACAA TTTGTTTGGA AACTAGTGTT GGAACTAAAC 90017 .......... .......... .......... .......... .......... .......... 441 TAGTTTTGAA CAATATGAAA CATGCTCCTA ATGTTCGTCT GTACCTAATT TTTATTGGGG 89957 .......... .......... .......... .......... .......... .......... 441 TTTTAGATGA TGAAAGATAT GTTAGTACCA ACGATGATGG AAAATGAAAG CTCATTAAGG 89897 .......... .......... .......... .......... .......... .......... 441 GTTCCTTAGT TTTGGCTCGT GGTAACAAAC GTCGTGGTCT ATAATTGACT ATGGTATCTA 89837 .......... .......... .......... .......... .......... .......... 441 CTTGTGTTGA TATGGTGAAT GCAGTTGAGA GCGATAACTT CTCAACGTTA TGACACAAGA 89777 .......... .......... .......... .......... .......... .......... 441 GACTCAGCCA CATCAGTGAG AAAGGACTTA ATGTTCTAGC CAATAAGAAA TTTTTGTCAA 89717 .......... .......... .......... .......... .......... .......... 441 ATTTCAAAAG TGCTAAATTA GAAAAGTGTG AGCACTGCTT GGCTGGTAAA CAAAATAAAT 89657 .......... .......... .......... .......... .......... .......... 441 ATCTTTTACG TCCTACCCTT CTTCTAGAAA GATAGAGTTG CTTGAGTTGG TGTATTCTGA 89597 .......... .......... .......... .......... .......... .......... 441 TTTATGTGGT CCAATGAAGA CAAAGACATT GGGTGGTGCA CTCTACTTTA TCACTTTCAT 89537 .......... .......... .......... .......... .......... .......... 441 TGATGATTGC TCGAGAAAAC TTTAGGTCTA TATCTCGAAG ACTAAAAACC AAGTGTTACG 89477 .......... .......... .......... .......... .......... .......... 441 TGTCTTCAAG AAGTTTTAGG CTTTAACTGA AAGAGAAATT GGAAGGAAAC TTAAATGTAT 89417 .......... .......... .......... .......... .......... .......... 441 TTGTTCTGAT AACGGTGGTG AATATTGTTG ATCATTTGAC AAATACTGCA AGCATCAAGG 89357 .......... .......... .......... .......... .......... .......... 441 TATTAGACAC CAGAAGACTC CTCCCAATAC TCCTCAGCTT AATGGTTTGG CTGAGAGGAT 89297 .......... .......... .......... .......... .......... .......... 441 GAACAGGACC TTGATGGAAA GAGTTAGATG TTTGCTAACT GAAGCAAAGT TGCCGAACTC 89237 .......... .......... .......... .......... .......... .......... 441 ATTTTGGGGT GAAGCTTTAT TGACCGTTGC ACATGTTATT AATCAATCTC ATGTTGTTGC 89177 .......... .......... .......... .......... .......... .......... 441 TTTGCAAAGT GATGTACCAA ATAGTGTTTG GTATGGAAAG GATGTTTCCT ATGACCATCT 89117 .......... .......... .......... .......... .......... .......... 441 GAGAGTATTT AGTTTCAAAG CTTTTGTACA TGTGCCGAAA GATGAGAGGT TAAAGTTAGA 89057 .......... .......... .......... .......... .......... .......... 441 TGCCAATACA AGGCAATGCA TCTTCATTGG ATATGGCCTA GATGAATTTG GTTACGGGCT 88997 .......... .......... .......... .......... .......... .......... 441 ATATGATCCA ATTGAAAAGA AACTTAGCCG TGATATTATT TTCATGGAGA ATCAAATCTT 88937 .......... .......... .......... .......... .......... .......... 441 TTGGTGAACA AATAGAAAAG TTTAGTACTT GCACTGATCC ATATTCCTTA ATGATGATGT 88877 .......... .......... .......... .......... .......... .......... 441 CGGGAATGAC TTTGCATCCA GAGAGTCATG ACTGTTATTT TTGGAAGTTT CACCCATATA 88817 .......... .......... .......... .......... .......... .......... 441 CGCGCCAAAA GGA-TCAAAT CTCACCACTT TATCACC 88781 || ||||| || ||| | || ||| .......... .GATTCAAAA GACAACACGT GATAACC 467 hqPGS_C08HBa0197A05.1-_SGN-E540411+ (93436 93115) ******************************************************************************** EST sequence 12 -strand 702 n (File: SGN-E540414-) 1 AAGTAATTTC TACCCCTTTT TAGCCTACGT GGCACTAGTT TAAAAAAAAA GTCAACAACC 61 ATTGGGCCCA CAAGATAGTG CCACGTAGGT CTAAAAGGGG TAAAAAATTA TTAATAAATA 121 AGTTCAGGGG GTAATAAGAT CTTAGTATGG TATAAGTGTA TCTCTGAGAT TTTGGACATA 181 GGCTAAGGGG GTACTTGGAC ATTATCCCAA CAATAAATAA AGGATATAAC ATGATTCAAA 241 AGACAACACG TGATAACCAC TTCTACAACT TGTGCATGAT CAATTGAGCA CCATATTGAG 301 GTTGAAGCAA CAATGGGTGA GGAGCATGAG CATAAGATGG AGAGAGTTCA AATGCATAAT 361 GTTTTAGAAT CATGACCATT GCCATTTTTG CCTCTAACAT AGCAAAATTT TGCCCAATAC 421 ATATTCTTGG ACCCCAACTA AATGGAAAAA ATACAACTTG TCCTTTTGTT GCTTTTGATA 481 TTCCTTCACT AAATCTCTCT GGCATAAACT CCATTGCATC ATCTCCCCAT ATTTCAGTAT 541 CATGATGCAC TAACATTGTT GCCAATATGA GTTGGACCCC AGAGGGTAAA CACAAATCCC 601 CTAACTTTGT TTCTGTATTC ACCATGCGAT TAATCGCGTA TACTGATGTA TACAACCTTA 661 AGACCTCGTT TAAGATCATT GTAACCACTT TTAGTTGATT CA Predicted gene structure (within gDNA segment 94495 to 86895): Exon 1 93337 93115 ( 223 n); cDNA 1 218 ( 218 n); score: 0.888 Intron 1 93114 92628 ( 487 n); Pd: 0.966 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 92627 92614 ( 14 n); cDNA 219 232 ( 14 n); score: 0.786 Intron 2 92613 88806 (3808 n); Pd: 0.664 (s: 0), Pa: 0.000 (s: 0) Exon 3 88805 88781 ( 25 n); cDNA 233 258 ( 26 n); score: 0.620 MATCH C08HBa0197A05.1- SGN-E540414- 0.888 262 0.373 C PGS_C08HBa0197A05.1-_SGN-E540414- (93337 93115,92627 92614,88805 88781) Alignment (genomic DNA sequence = upper lines): AAGTAATTTT CTACCCCTTT TTAGCCTACG TGGAACTAGT TTGAAAAAAA AGTCAACCAT 93278 |||||| ||| |||||||||| |||||||||| ||| |||||| || ||||||| ||||||| | AAGTAA-TTT CTACCCCTTT TTAGCCTACG TGGCACTAGT TTAAAAAAAA AGTCAACAAC 59 CGTTGGGCCC ACAAGATAAT GCCACGTAGG TCGAAAAGGG GTAAAAAATT ATTAATAAAA 93218 | |||||||| |||||||| | |||||||||| || ||||||| |||||||||| |||||| ||| CATTGGGCCC ACAAGATAGT GCCACGTAGG TCTAAAAGGG GTAAAAAATT ATTAAT-AAA 118 TAAGTTCAGG GGGGGTAATA GGACCTTAGT GTAGTATAAG TGTGTCTCTG AGATTTCGGG 93158 |||||||| |||||||||| || |||||| | ||||||| ||| |||||| |||||| || TAAGTTCA-- GGGGGTAATA AGATCTTAGT ATGGTATAAG TGTATCTCTG AGATTTTGGA 176 CATAGGTTAA GAGGGTACTT GGGCATTATC CCAAAAAGGA AAGGTAATTC TTGTTTTTAT 93098 |||||| ||| | |||||||| || ||||||| |||| || | || CATAGGCTAA GGGGGTACTT GGACATTATC CCAACAA-TA AAT....... .......... 218 GAAATAAGTT CTGTAAGAAA GTCAAAAGTG CTTGGATAGG TATGGTTTCT ACTAACTTTT 93038 .......... .......... .......... .......... .......... .......... 218 GAAAAGCTTC TATTACTTTA AGTGTCTAAA ACCTATGTAA TATGCAAAGA TGAATGACAA 92978 .......... .......... .......... .......... .......... .......... 218 AAAAAATTAT TGCTGAACCT TATATTTTCT CTAAAGTTTC AAATACTAAC CGTGATATCA 92918 .......... .......... .......... .......... .......... .......... 218 AAAGGACTTT TTCTTAAGGG ATCTGTGAAG GTAAAGAAAT AAGGTTTTCT TCAATTCTTC 92858 .......... .......... .......... .......... .......... .......... 218 TAAAGTGAGT GAGCTAGCAA CAGTAACATG TTATCTACCA ACTTTTTGGG TGCAGGCCCT 92798 .......... .......... .......... .......... .......... .......... 218 CCCATGTTTA CAGGAGAAAT TTACCACATA TGGATGCTAA AGATGAAGGC TTATCTCAAA 92738 .......... .......... .......... .......... .......... .......... 218 GCTCTTAGTT TATGGGAAAC AGTTTAAAGT TACGATGAGC CTCCTCCCCT TGGGCCAAAT 92678 .......... .......... .......... .......... .......... .......... 218 CCAATAGTTG CACAAATGAA GATTTACCAA GATGCAAAGT CAAGGAAATC AAAGAATCTC 92618 |||| || | .......... .......... .......... .......... .......... AAAGGATATA 228 ACATGTCACC ATTCAACACT TTCAGATGTG ATTTCCATAA AAATAATATC TTGTGAAACA 92558 |||| ACAT...... .......... .......... .......... .......... .......... 232 GTTAAAGAAG CATAGGAGAA GATAAAAGAA GATTCCCACA GAAGTGAGAG AGTGAAGATT 92498 .......... .......... .......... .......... .......... .......... 232 GTCAAACTTT TAACTCTCAA AAGAGAATTT GAGATGATAA GGATGGAATA AGGACATACT 92438 .......... .......... .......... .......... .......... .......... 232 GTAAAAGAGT ATTCTGAAAA ACTTGTGGAT ATTGTTAGCA AAATAAGGTT GTTAGGTAAA 92378 .......... .......... .......... .......... .......... .......... 232 ACCTTTCTCG ATTTAAAGGT GATGGAGAAG ATGATGATAA GATTACCAAC AAAGTTTGAG 92318 .......... .......... .......... .......... .......... .......... 232 TCAAAGATTT GACCTATAGA AAAATCTTGT GATTTTAAGA CTTGATCTAT TGCGGAACCG 92258 .......... .......... .......... .......... .......... .......... 232 ATCAACAAGT TGCAAGCCCA AGAACAAAGA TTAAGTATAA GAGATAAGAA ATAATAGAGT 92198 .......... .......... .......... .......... .......... .......... 232 GGAATTTTAG GCACAACATA AATGCAAGCA ACTTATGAAA AACAATAGAA GGATGGAAGG 92138 .......... .......... .......... .......... .......... .......... 232 AGATAAAGTA GCAAATAAAA ATGTCACGCC CCAAATTAGT TCTGTGATCG GTGCTAAGGG 92078 .......... .......... .......... .......... .......... .......... 232 GAATGAATCC CAAAGCAAGC CTTAACATAA ATCTATAGAA AATCTGGCAT AGTTTTCTTT 92018 .......... .......... .......... .......... .......... .......... 232 GTTTTAGGCC TATCCTGAAT TTTCCTTGCC TCACTATCAA CCACAACATA GTATACATCA 91958 .......... .......... .......... .......... .......... .......... 232 ATGATCTAAT TATCACACAA TAAAACCAAT TCATCTCCAA ATTATGAAAA AGAAGTTCCA 91898 .......... .......... .......... .......... .......... .......... 232 AACTAGTCAC TTGACTACAA TACGAAGGAC TATAATGATG ACTCAAATCA AAGGAATGAC 91838 .......... .......... .......... .......... .......... .......... 232 AAATGGAATT ACTCTATGGG TTATTAAAGA AACTAAATAA ACCATATTGA ATCAATAGTT 91778 .......... .......... .......... .......... .......... .......... 232 CTCTTTGTGG GGTCCATACC CATTGTAGAT AAACACAATG AGAACTAAAA TGCAGAAAAT 91718 .......... .......... .......... .......... .......... .......... 232 GTTGGATTAA TGTTTGTTGC TCATTGTTAA GAGTCAACAA ATGCTACAAC AAGCCAAAGC 91658 .......... .......... .......... .......... .......... .......... 232 TCACTATTTC TTTTTCAACG AAAATCTTAC CAAGAAATCT TCATAGGTGC AAAGGTTGAA 91598 .......... .......... .......... .......... .......... .......... 232 ATCTTGTGTT TTTGTGATGT CACTGGTGAC ATCATTATGA GTAGATTTCT CCTATAAATA 91538 .......... .......... .......... .......... .......... .......... 232 CAGAGCCCTT GCTCGTTTCA AAAATACACC AAATTAGATA GAAAAACCAT TTTGAGAGCA 91478 .......... .......... .......... .......... .......... .......... 232 AACTGAGGTA TTCATAGACT ATACAAGAAA AATAGTATGT GAAGAAAAAT AGAGTGCGAA 91418 .......... .......... .......... .......... .......... .......... 232 CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTTTCCT TTTCAGTGTG TAGTAGTCAC 91358 .......... .......... .......... .......... .......... .......... 232 TTTGAGTATT GTATTCTTGA CTACACAGTG TAAAATTCCT TATTATAGTG ATACCAGTTG 91298 .......... .......... .......... .......... .......... .......... 232 CTCCTCTTGG CCTATGGTTT TTTTCCCTTT ATTTAGAAGG GTTTCCACGT AAAATTCTTG 91238 .......... .......... .......... .......... .......... .......... 232 GTGTCATTAT TTTCTCATTT TATTTCCATT ACTTTTACTT TATATATTTT TGTGTTTGTC 91178 .......... .......... .......... .......... .......... .......... 232 CGCATTTTCC CAACAAACTG GTATTAGAGC CAAGGTTTAT TTGAGTATGA TAGGTGGTTG 91118 .......... .......... .......... .......... .......... .......... 232 CAGCACAACC TGAACTTCCA CATCAGAAAA AATTTACTTT GATTTGCGAT AATAATATTT 91058 .......... .......... .......... .......... .......... .......... 232 ATTCGAGAAA AATAATGAAA GCCAAAACAA ACAGAATTGT TACTTTGAAT GATGTTAATT 90998 .......... .......... .......... .......... .......... .......... 232 ATGCCATTTT GAAGGGGAAA ATGGAAGTTC TTCTTTATGT CAAGAACTTT TACAAACCAG 90938 .......... .......... .......... .......... .......... .......... 232 TATTTACCAC TGTAAAGTCT GATAATAAAA CAGATGAAGG GTGGAATCTG TTACACAAAC 90878 .......... .......... .......... .......... .......... .......... 232 AGGTTTGTGG ATTCATTAGG CAATGGGTCG ACGATAATGT GTTGAACCAT ATTTCTGGGG 90818 .......... .......... .......... .......... .......... .......... 232 AAACATATGC TCGAATCCTA TGAGAGCATC TTGAAAGTTC GTATGCTTAG AAAACTGTCA 90758 .......... .......... .......... .......... .......... .......... 232 ATAACAAAAT GTTCTTAATA AAGCTAATGT TGAGTTTAAA ATATTATGAT GGTTCTCCGA 90698 .......... .......... .......... .......... .......... .......... 232 TGATAGACCA TCTGAATAAT TTTCAGGGGA TCATGAATCA ATTATCTGCT ATAGGCATCA 90638 .......... .......... .......... .......... .......... .......... 232 AATTTGATGA AGAAATTCAA GGCTTACTTT TACTTGGTTC CCTACCAGAC TCTTGGGAAA 90578 .......... .......... .......... .......... .......... .......... 232 CATTTAGAAC TTCATTGTCA AATTTTGCTC CGGATGGTGT GATCTCTATG GATTCCGCCA 90518 .......... .......... .......... .......... .......... .......... 232 AGAGTAGTGT CTTGAACGAA GATATAAGAA GAAAACTCAA GGTTCTTCTT CGTAGGATGC 90458 .......... .......... .......... .......... .......... .......... 232 CGTGATAACT GGCCCTAGGG GGAGAACAAA AATCATGGTT CTCAATATAG AGAACAAAAT 90398 .......... .......... .......... .......... .......... .......... 232 AGGAGCAAAT TTAGAGGAAG ACTTAAGGAT ATTGAGTGCT ATCATTGTGT CATGAAAAAG 90338 .......... .......... .......... .......... .......... .......... 232 CACACAAAGA GTTCTGCAGG AATTTGAAGA GGGAGAACAA AAACAAAGAG TAAACTAAGG 90278 .......... .......... .......... .......... .......... .......... 232 AAGATGGAAA TGAAAATTGC CTGGCCACCG TTACCACCAA AGATCTTGTT ACTGTCCTTG 90218 .......... .......... .......... .......... .......... .......... 232 ATGGGGATAT GATACATATT GCTTGTGATG AGTCAATCTG GGTTGTGGAC ACTGGTGCCA 90158 .......... .......... .......... .......... .......... .......... 232 TATCTCATGT GACATCACGA AAGGATTTTT TCTCTTTCTA TACTCTTGGT GATTTTTGAA 90098 .......... .......... .......... .......... .......... .......... 232 CCTTGAGTAT GGGTAATGAG ACTTTTTCTA GGGTGGTTGA TATTGGTACA ATTTGTTTGG 90038 .......... .......... .......... .......... .......... .......... 232 AAACTAGTGT TGGAACTAAA CTAGTTTTGA ACAATATGAA ACATGCTCCT AATGTTCGTC 89978 .......... .......... .......... .......... .......... .......... 232 TGTACCTAAT TTTTATTGGG GTTTTAGATG ATGAAAGATA TGTTAGTACC AACGATGATG 89918 .......... .......... .......... .......... .......... .......... 232 GAAAATGAAA GCTCATTAAG GGTTCCTTAG TTTTGGCTCG TGGTAACAAA CGTCGTGGTC 89858 .......... .......... .......... .......... .......... .......... 232 TATAATTGAC TATGGTATCT ACTTGTGTTG ATATGGTGAA TGCAGTTGAG AGCGATAACT 89798 .......... .......... .......... .......... .......... .......... 232 TCTCAACGTT ATGACACAAG AGACTCAGCC ACATCAGTGA GAAAGGACTT AATGTTCTAG 89738 .......... .......... .......... .......... .......... .......... 232 CCAATAAGAA ATTTTTGTCA AATTTCAAAA GTGCTAAATT AGAAAAGTGT GAGCACTGCT 89678 .......... .......... .......... .......... .......... .......... 232 TGGCTGGTAA ACAAAATAAA TATCTTTTAC GTCCTACCCT TCTTCTAGAA AGATAGAGTT 89618 .......... .......... .......... .......... .......... .......... 232 GCTTGAGTTG GTGTATTCTG ATTTATGTGG TCCAATGAAG ACAAAGACAT TGGGTGGTGC 89558 .......... .......... .......... .......... .......... .......... 232 ACTCTACTTT ATCACTTTCA TTGATGATTG CTCGAGAAAA CTTTAGGTCT ATATCTCGAA 89498 .......... .......... .......... .......... .......... .......... 232 GACTAAAAAC CAAGTGTTAC GTGTCTTCAA GAAGTTTTAG GCTTTAACTG AAAGAGAAAT 89438 .......... .......... .......... .......... .......... .......... 232 TGGAAGGAAA CTTAAATGTA TTTGTTCTGA TAACGGTGGT GAATATTGTT GATCATTTGA 89378 .......... .......... .......... .......... .......... .......... 232 CAAATACTGC AAGCATCAAG GTATTAGACA CCAGAAGACT CCTCCCAATA CTCCTCAGCT 89318 .......... .......... .......... .......... .......... .......... 232 TAATGGTTTG GCTGAGAGGA TGAACAGGAC CTTGATGGAA AGAGTTAGAT GTTTGCTAAC 89258 .......... .......... .......... .......... .......... .......... 232 TGAAGCAAAG TTGCCGAACT CATTTTGGGG TGAAGCTTTA TTGACCGTTG CACATGTTAT 89198 .......... .......... .......... .......... .......... .......... 232 TAATCAATCT CATGTTGTTG CTTTGCAAAG TGATGTACCA AATAGTGTTT GGTATGGAAA 89138 .......... .......... .......... .......... .......... .......... 232 GGATGTTTCC TATGACCATC TGAGAGTATT TAGTTTCAAA GCTTTTGTAC ATGTGCCGAA 89078 .......... .......... .......... .......... .......... .......... 232 AGATGAGAGG TTAAAGTTAG ATGCCAATAC AAGGCAATGC ATCTTCATTG GATATGGCCT 89018 .......... .......... .......... .......... .......... .......... 232 AGATGAATTT GGTTACGGGC TATATGATCC AATTGAAAAG AAACTTAGCC GTGATATTAT 88958 .......... .......... .......... .......... .......... .......... 232 TTTCATGGAG AATCAAATCT TTTGGTGAAC AAATAGAAAA GTTTAGTACT TGCACTGATC 88898 .......... .......... .......... .......... .......... .......... 232 CATATTCCTT AATGATGATG TCGGGAATGA CTTTGCATCC AGAGAGTCAT GACTGTTATT 88838 .......... .......... .......... .......... .......... .......... 232 TTTGGAAGTT TCACCCATAT ACGCGCCAAA AGGA-TCAAA TCTCACCACT TTATCACC 88781 || ||||| || ||| | || ||| .......... .......... .......... ..GATTCAAA AGACAACACG TGATAACC 258 hqPGS_C08HBa0197A05.1-_SGN-E540414- (93337 93115) ******************************************************************************** EST sequence 10 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 100333 to 90600): Exon 1 93434 93126 ( 309 n); cDNA 442 747 ( 306 n); score: 0.799 Intron 1 93125 91330 (1796 n); Pd: 0.000 (s: 0.90), Pa: 0.813 (s: 0) Exon 2 91329 91309 ( 21 n); cDNA 748 769 ( 22 n); score: 0.643 PPA cDNA 847 858 MATCH C08HBa0197A05.1- SGN-E540411- 0.799 330 0.385 C PGS_C08HBa0197A05.1-_SGN-E540411- (93434 93126,91329 91309) Alignment (genomic DNA sequence = upper lines): GGGATAATGT ACAAGTACCC CCTCAACCTA TGCCCGAAAT CTCAGAGACA CACTTATACT 93375 |||||||||| ||||||||| ||| | |||| || || |||| |||||||| | ||||||||| GGGATAATGT CCAAGTACCC CCTTAGCCTA TGTCCAAAAT CTCAGAGATA CACTTATACC 501 ATACTAAGGT CTTATTACAC CCCTTAACTT ATTTTACAAG TAATTTTCTA CCCCTTTTTA 93315 |||||||| | |||||||| | |||| ||||| | |||| | ||||||| || |||||||| ATACTAAGAT CTTATTAC-C CCCTGAACTT A-TTTATTAA TAATTTTTTA CCCCTTTTAG 559 GCCTACGTGG AACTAGTTTG AAAAAAAAGT CAACCATCGT TGGGCCCACA AGATAATGCC 93255 ||||||||| |||| ||| | | | | | | || |||| ACCTACGTGG CACTATCTTG TGGGCCCAAT GGTTGTTGAC TTTTTTTTTA AACTAGTGCC 619 ACGTAGGTCG AAAAGGGGTA AAAAATTATT AATAAAATAA GTTCAGGGGG GGTAATAGGA 93195 ||||||| |||||||||| ||||||| | ||||||||| ||||| |||| |||||||||| ACGTAGGCTA AAAAGGGGTA GAAAATTACT TATAAAATAA GTTCA-GGGG GGTAATAGGA 678 CCTTAGTGTA GTATAAGTGT GTCTCTGAGA TTTCGGGCAT AGGTTAAGAG GGTACTTGGG 93135 ||||||| || |||||||||| ||||||| | |||||||||| ||||| || | |||||||| | CCTTAGTATA GTATAAGTGT GTCTCTGGAA TTTCGGGCAT AGGTTGAGGG GGTACTTGTG 738 CATTATCCCA AAAAGGAAAG GTAATTCTTG TTTTTATGAA ATAAGTTCTG TAAGAAAGTC 93075 ||||||||| CATTATCCC. .......... .......... .......... .......... .......... 747 AAAAGTGCTT GGATAGGTAT GGTTTCTACT AACTTTTGAA AAGCTTCTAT TACTTTAAGT 93015 .......... .......... .......... .......... .......... .......... 747 GTCTAAAACC TATGTAATAT GCAAAGATGA ATGACAAAAA AAATTATTGC TGAACCTTAT 92955 .......... .......... .......... .......... .......... .......... 747 ATTTTCTCTA AAGTTTCAAA TACTAACCGT GATATCAAAA GGACTTTTTC TTAAGGGATC 92895 .......... .......... .......... .......... .......... .......... 747 TGTGAAGGTA AAGAAATAAG GTTTTCTTCA ATTCTTCTAA AGTGAGTGAG CTAGCAACAG 92835 .......... .......... .......... .......... .......... .......... 747 TAACATGTTA TCTACCAACT TTTTGGGTGC AGGCCCTCCC ATGTTTACAG GAGAAATTTA 92775 .......... .......... .......... .......... .......... .......... 747 CCACATATGG ATGCTAAAGA TGAAGGCTTA TCTCAAAGCT CTTAGTTTAT GGGAAACAGT 92715 .......... .......... .......... .......... .......... .......... 747 TTAAAGTTAC GATGAGCCTC CTCCCCTTGG GCCAAATCCA ATAGTTGCAC AAATGAAGAT 92655 .......... .......... .......... .......... .......... .......... 747 TTACCAAGAT GCAAAGTCAA GGAAATCAAA GAATCTCACA TGTCACCATT CAACACTTTC 92595 .......... .......... .......... .......... .......... .......... 747 AGATGTGATT TCCATAAAAA TAATATCTTG TGAAACAGTT AAAGAAGCAT AGGAGAAGAT 92535 .......... .......... .......... .......... .......... .......... 747 AAAAGAAGAT TCCCACAGAA GTGAGAGAGT GAAGATTGTC AAACTTTTAA CTCTCAAAAG 92475 .......... .......... .......... .......... .......... .......... 747 AGAATTTGAG ATGATAAGGA TGGAATAAGG ACATACTGTA AAAGAGTATT CTGAAAAACT 92415 .......... .......... .......... .......... .......... .......... 747 TGTGGATATT GTTAGCAAAA TAAGGTTGTT AGGTAAAACC TTTCTCGATT TAAAGGTGAT 92355 .......... .......... .......... .......... .......... .......... 747 GGAGAAGATG ATGATAAGAT TACCAACAAA GTTTGAGTCA AAGATTTGAC CTATAGAAAA 92295 .......... .......... .......... .......... .......... .......... 747 ATCTTGTGAT TTTAAGACTT GATCTATTGC GGAACCGATC AACAAGTTGC AAGCCCAAGA 92235 .......... .......... .......... .......... .......... .......... 747 ACAAAGATTA AGTATAAGAG ATAAGAAATA ATAGAGTGGA ATTTTAGGCA CAACATAAAT 92175 .......... .......... .......... .......... .......... .......... 747 GCAAGCAACT TATGAAAAAC AATAGAAGGA TGGAAGGAGA TAAAGTAGCA AATAAAAATG 92115 .......... .......... .......... .......... .......... .......... 747 TCACGCCCCA AATTAGTTCT GTGATCGGTG CTAAGGGGAA TGAATCCCAA AGCAAGCCTT 92055 .......... .......... .......... .......... .......... .......... 747 AACATAAATC TATAGAAAAT CTGGCATAGT TTTCTTTGTT TTAGGCCTAT CCTGAATTTT 91995 .......... .......... .......... .......... .......... .......... 747 CCTTGCCTCA CTATCAACCA CAACATAGTA TACATCAATG ATCTAATTAT CACACAATAA 91935 .......... .......... .......... .......... .......... .......... 747 AACCAATTCA TCTCCAAATT ATGAAAAAGA AGTTCCAAAC TAGTCACTTG ACTACAATAC 91875 .......... .......... .......... .......... .......... .......... 747 GAAGGACTAT AATGATGACT CAAATCAAAG GAATGACAAA TGGAATTACT CTATGGGTTA 91815 .......... .......... .......... .......... .......... .......... 747 TTAAAGAAAC TAAATAAACC ATATTGAATC AATAGTTCTC TTTGTGGGGT CCATACCCAT 91755 .......... .......... .......... .......... .......... .......... 747 TGTAGATAAA CACAATGAGA ACTAAAATGC AGAAAATGTT GGATTAATGT TTGTTGCTCA 91695 .......... .......... .......... .......... .......... .......... 747 TTGTTAAGAG TCAACAAATG CTACAACAAG CCAAAGCTCA CTATTTCTTT TTCAACGAAA 91635 .......... .......... .......... .......... .......... .......... 747 ATCTTACCAA GAAATCTTCA TAGGTGCAAA GGTTGAAATC TTGTGTTTTT GTGATGTCAC 91575 .......... .......... .......... .......... .......... .......... 747 TGGTGACATC ATTATGAGTA GATTTCTCCT ATAAATACAG AGCCCTTGCT CGTTTCAAAA 91515 .......... .......... .......... .......... .......... .......... 747 ATACACCAAA TTAGATAGAA AAACCATTTT GAGAGCAAAC TGAGGTATTC ATAGACTATA 91455 .......... .......... .......... .......... .......... .......... 747 CAAGAAAAAT AGTATGTGAA GAAAAATAGA GTGCGAACGA TATTTTAGTA AGGTGGAAAC 91395 .......... .......... .......... .......... .......... .......... 747 CAAAAGAGTG TTTTCCTTTT CAGTGTGTAG TAGTCACTTT GAGTATTGTA TTCTTGACTA 91335 .......... .......... .......... .......... .......... .......... 747 CACAGTGTAA AATTCCTT-A TTATAGT 91309 | || ||| || | ||||||| .....TTTAT TGTTCTTTAA TTATAGT 769 hqPGS_C08HBa0197A05.1-_SGN-E540411- (93434 93126) ******************************************************************************** EST sequence 2 +strand 702 n (File: SGN-E378946+) 1 CCGACATGAT TGGTTCAAGC TTTATCAACA GTGATCGACA AAGCAAAAGG TCCTAAAATC 61 AAAGATGCTT TTCAAAAGTA AAAACTGACA GTGACAAAGT AAAAGACAGT TGTAAAATTT 121 AATGCTTTCC CAAAAGCAAA GATAAGGAAT GAATAAAGCA ATCCTCTACA ACCAATCGGA 181 AGAAGGATTT GAGATTCCTT TTATCTTTTC AAGTCTATAT AAGACTTTGT ATTTTCCCAT 241 TGAAGGCATC AGAAATTTAC GAACACTAAA TTTTTCTTGA ATGCTCTCTG TAAACATTAT 301 GCAATAAACA TTTGTAAATT ATTTTTGAGA ACTTTATAAA CTTTGCTTTT TGACTTAGTT 361 CTTAACTTCT AGACTTGACT CTTAAATTTC ATTGAATTGA TATATGGATT CAAGGTTCAT 421 AATCTCATGT TTATGGATGA TTTCTTGTTT TTCAAATTGG AGAGTTCATG CGAAATTATG 481 AGCATTAACT ACGAAACACG AGAAGTCAAA ATTACTTTCA TCTCAAGACT ATTCAACTTT 541 TAGGGTTCAT GCGGGATTAT GGGAATAAAC AATTCAACTC AAGGATTTCA CGGGTAATGT 601 GTAATAGTCC CATGATTATA AATATAATCT TAAAATGAAT AAGGAACTCA ATACTCAAGA 661 CTTAGAACTT GGAGATACTA CTCCCTCTCA TATGCATTAA CC Predicted gene structure (within gDNA segment 91550 to 98721): Exon 1 93620 93640 ( 21 n); cDNA 290 310 ( 21 n); score: 0.619 Intron 1 93641 97564 (3924 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.61) Exon 2 97565 97886 ( 322 n); cDNA 311 634 ( 324 n); score: 0.809 MATCH C08HBa0197A05.1+ SGN-E378946+ 0.809 343 0.489 C PGS_C08HBa0197A05.1+_SGN-E378946+ (93620 93640,97565 97886) Alignment (genomic DNA sequence = upper lines): GTGTATACCA TGGAATTGAC AGTGATTACT AGTTATCCTA ATGAAGACAT AGGTTAAGTT 93679 || | | | || ||| || | GTAAACATTA TGCAATAAAC A......... .......... .......... .......... 310 AAATTGATAC AACTTCAATA AAATACTAAT TCATACTACA ATAACTATTT GATATGTATG 93739 .......... .......... .......... .......... .......... .......... 310 CAATGATAAA AAAATTGTAT AAGAAAACAT TATATATTTG TTGACTATGT ACAACTGCCG 93799 .......... .......... .......... .......... .......... .......... 310 TCTATAGTGT TAGCGACCGA AGTAATAGAA CACATTTCTA AAGAAATTTT TGTATCTCTC 93859 .......... .......... .......... .......... .......... .......... 310 TTCAAATTAA AGGTAAAATT TCAACTTCAC TTGATAGTGA TTTTCAAGTG TGATGTACTT 93919 .......... .......... .......... .......... .......... .......... 310 TGCAACAAAA ATGCATAATG ATTTACTATT CATCATTTGT GGGGTTTATC CCAACATCCA 93979 .......... .......... .......... .......... .......... .......... 310 TCTCAGTTTT AGAGGCTTCA TAGATAGACA ATAGATGTTA GTCCTTTGAG TATTTTTAGT 94039 .......... .......... .......... .......... .......... .......... 310 ATTATATCTT ATTGTTAAGA CTTGGGTTGC CAAATTTTGG CCAAGTTTTA GTGTTCAGTT 94099 .......... .......... .......... .......... .......... .......... 310 TTAAAAACAC TCTCAATTAT TACATGCTTT CAATTGAGTT AAGTTTAATG ATTATTGTCT 94159 .......... .......... .......... .......... .......... .......... 310 TTCACTAAGT TAAGTAAGTT GGGCCAAGGG TTCACTTGAG CCTAGCAATG GTCATCGAGC 94219 .......... .......... .......... .......... .......... .......... 310 GTCAGTCACG GCGAGGGTGT AGACTAAGGC GTGACAAACT TGTTATCAGA GCACAGAGTT 94279 .......... .......... .......... .......... .......... .......... 310 CAAAAGTTCT AGGGAGTCTA TGAATTCGTG TCTGTAGAAT CCTAGTTAAT GGTGTGAAGC 94339 .......... .......... .......... .......... .......... .......... 310 GTGAGACATC TATGATTAGG AGCCTGCAAC ATTTAGGAAA TTCCTCACTT CTTTCGTACT 94399 .......... .......... .......... .......... .......... .......... 310 TACTTTGTGA ATTTGAGTTT ACTTCTAAAA AGTTTCTTTT TAACTCGTGC TTACGCGTAA 94459 .......... .......... .......... .......... .......... .......... 310 CAAAATATGA GCTAGGTTTG TTTGAAGACA CCTTTTTGGG GCGTTTCTTA ACCCCGTGAG 94519 .......... .......... .......... .......... .......... .......... 310 CAAAGAGATG CTTGCCGACA TGAGGAGCAT GATGAGTTTA TTCATCATTA TCAGGTAAGG 94579 .......... .......... .......... .......... .......... .......... 310 AAATTAAGGC AGCCATACTA GTAGGTGTCA TGGACATAGA AAGGTTGATG ATCCGTGTGA 94639 .......... .......... .......... .......... .......... .......... 310 AACAAATTGA GAATTAAAAA ACTAGGAGAG AGAAGAGTTA AGAATAAGAG GGTTAAGACA 94699 .......... .......... .......... .......... .......... .......... 310 TAAGAAATGA GTTTGGGCAG CAATAGAGTA ATGTAAACTT GTTTTCTTTT TAACAGAAGC 94759 .......... .......... .......... .......... .......... .......... 310 AGAAAGGACA TGCTCCAGCA CCTGCTGAAA GAAGCAATGT GTGTGCAATA GTCAGAATAC 94819 .......... .......... .......... .......... .......... .......... 310 TCATAACTTC AGAGCTAGAC TTGCACATTC GCAATGTAGT AAGGCAAAAA AGGTTACTAA 94879 .......... .......... .......... .......... .......... .......... 310 GAATCATGCA TGTGCTAAGT GTGTTTAGAA CCACTCAAAG GTCTATTATG GTGGTTCCAC 94939 .......... .......... .......... .......... .......... .......... 310 AGGTTGCTTC AAATGTTGCC AGAATGATAA TTTTATAAGA GAGTATCCTA AGGAAAGACA 94999 .......... .......... .......... .......... .......... .......... 310 GAAAAATGGT AAACATGGCA ATAAAATCTA ATATTCTTCA GTTGCTTTAG CAGATAGAGC 95059 .......... .......... .......... .......... .......... .......... 310 TGCATCTAAA TGAGCTACTT TAGGGGAAGT TGGACCTTCT TTATGCTATC ACTAGTCGTC 95119 .......... .......... .......... .......... .......... .......... 310 GAGATCAGAG GATTCGCCAG ATTTTGTCAC TAGTATAATC CAAGTCTTCA GTTTTGATGT 95179 .......... .......... .......... .......... .......... .......... 310 TCTTCGTGAG CAACTCCTTG AGCCCTACAG TGTTTCTACA CTTGTTGGTT AGTCTATTCT 95239 .......... .......... .......... .......... .......... .......... 310 AGTAGAGAAA GTCAATTATG ATTGTACATT TTGTGTCAAT CACATGAATA CCATGGATAA 95299 .......... .......... .......... .......... .......... .......... 310 CATGTATGTA CTAGCTTCAC TCATGTTATG TATCACTAGA TTGTAAAAAA TTCTAGTATT 95359 .......... .......... .......... .......... .......... .......... 310 CAAGTTCCAA TTTCCAATGA ATCAGTTATC GATTTCAAAA GAAGTTTAAC AGTGCCTAAG 95419 .......... .......... .......... .......... .......... .......... 310 GGTCATTTCA TTTCGTACCT TAAGGAAATA AAGTTAGTTT CTAAGGGATA TGTCTTTCAC 95479 .......... .......... .......... .......... .......... .......... 310 TTAGTCCGAG TTAATGAATC TAGTTTTGAG ATACCTCTAT TCAGTCAGTT TCAATAGTAA 95539 .......... .......... .......... .......... .......... .......... 310 AAGAGTTTTC AGAAGTTTTT CCAGATGATT TAGCCGGAGT CCCTCCTAGG AGAGATAGAC 95599 .......... .......... .......... .......... .......... .......... 310 TTAGGTATAT ATATTCTTCC AGATACTCGT CCTATATCTA TTCCTCCATA CATAATGAAA 95659 .......... .......... .......... .......... .......... .......... 310 CTAACATAGC TAAAAGAGCT TAAGGAGCAG TTAAAGTACC TCCTAGAGAA AGATTTTATT 95719 .......... .......... .......... .......... .......... .......... 310 TGACCAAGTG TCTCACCTTG GGGCGCTCTG GTCTTATTTA TGAAGAAAAA GGATTGTTCC 95779 .......... .......... .......... .......... .......... .......... 310 CTTAGGATGT GTATAGATTA CCGTCAGTTG AACAAGGTTA CCATTACAAA CAAGTATCCT 95839 .......... .......... .......... .......... .......... .......... 310 CTTCTAAGGA TAGATAATTT ATTCAATCAA ATTCAAGGTG CCACCTATTT TCTAAGATAG 95899 .......... .......... .......... .......... .......... .......... 310 ATCTCAGATC TGGCTACCAT TAGTTATGAG TAAGGGAATG TGATATTCCA AAGACTGATT 95959 .......... .......... .......... .......... .......... .......... 310 TCAGAACTAG AAATGGGCAT TATGAGTTTT TGGTCATATC CTTTGGGTTG ACCATTGCGC 96019 .......... .......... .......... .......... .......... .......... 310 CTTCAACATT CATGGACCTT ATCAATAGAG ACTCCAAACA TTATTTAGAT ATGTTGGATA 96079 .......... .......... .......... .......... .......... .......... 310 TCGTTTTCAT TGATGACATA CTAGTCTATT AAAGGAATGA AGAAAATCAT GCTAGCCATC 96139 .......... .......... .......... .......... .......... .......... 310 TAAGAATAGT TCATCAGAAT TTAAAGGATA GAAAGTTGTA TCCAAGTTCT CTAAGTGTGA 96199 .......... .......... .......... .......... .......... .......... 310 GTTTTGTCTT GAGTCTGTGG CATTCTTAGG TCACATAGTT TCTGATGATG GTATTAGAGT 96259 .......... .......... .......... .......... .......... .......... 310 TTATACTCAA AATATTTAGG CAGTGCAAAA TTTGCCTAGA CCCACATTTC CAACTAATAT 96319 .......... .......... .......... .......... .......... .......... 310 TAGGAGTTTC TTGGGTTTGA CTGCTACTAC AAAAGATTTG TAGAAGGTTT ATTGTCTATT 96379 .......... .......... .......... .......... .......... .......... 310 TCGTCTCCTT TGACAAGGTT GATTTAGAAA ATAATCAAGT TTCAATGGTT TGAAGCTTGT 96439 .......... .......... .......... .......... .......... .......... 310 CAAAAAAATT TCATGAATTG AAGAAAAGGT CGACGACTAC CTCAGTTTTT ACTTTACCGG 96499 .......... .......... .......... .......... .......... .......... 310 AGGGTAATCA AGGTTTTGTG GTAGGGTTGG TTTGAGTTGT GTCCTAGTGC AGAATGACAA 96559 .......... .......... .......... .......... .......... .......... 310 GGTTATAGAA TATGCCTCTA GGCAATAGAA ATTTCGTGAG AAGAACTACC AAACTCATGA 96619 .......... .......... .......... .......... .......... .......... 310 CTTAGAGTTG GTTGTTGTAG TATTTTTGTT GAAGATATGG TGTCACTATT TGTATGGGGT 96679 .......... .......... .......... .......... .......... .......... 310 TCATGTTGAT GTATTCACTG ATCACAAGAG CTTACAATAT GTGTTCACTC TTAGAACATA 96739 .......... .......... .......... .......... .......... .......... 310 ATCTCTATGA GTATTATTTA CCACCAAGTT AAGGCTAATG TGGTTGTTGA TGCCTTGAAC 96799 .......... .......... .......... .......... .......... .......... 310 ATGTTGTATA TGTGTACTAA CACCCATCTT GAAGAATAGA AGAAATAACT AGCAAAAGAT 96859 .......... .......... .......... .......... .......... .......... 310 GTGCATACAC TTGCAAGCTT AGGAGTTCGA CTCATGGATT CCACAGAATG AGGAATGGTG 96919 .......... .......... .......... .......... .......... .......... 310 GTGATGATTG AGGCTGAATC ATCATTATTG TAAAAAGTGA AAGAGACGAA AGTCCAAGAT 96979 .......... .......... .......... .......... .......... .......... 310 CCTATTTTTC TTGAGTTGAA AACAAATATT CATAAGCAAA AGGTATTAGC TTTTGAACAA 97039 .......... .......... .......... .......... .......... .......... 310 GAGGGAGATG GTGTATTGAT ATATCAAGGT AGACTATGTG TAACAATAGT GGATGAAAAC 97099 .......... .......... .......... .......... .......... .......... 310 ATATATTTTG GTTGAACTAA CCTAAATGTA TCCATTTTCT TGCTCAAAAC TCTTTTGTAA 97159 .......... .......... .......... .......... .......... .......... 310 AGCTTATTTT CCTCTTAACT TAAATCTGAA AACATTTATA AACTCTTAGG GAATGCTTGC 97219 .......... .......... .......... .......... .......... .......... 310 AGTACATCAA AAATGATCAT TAGCAGCAAT TAATTCTTAG TTGCCGCTAA ATATATATTT 97279 .......... .......... .......... .......... .......... .......... 310 TCAGCGGAAA TCAGCACTCT TTGTATATGT CCCTAAAGCC TTTAACGACA TTGATTTTCA 97339 .......... .......... .......... .......... .......... .......... 310 TGGCACTTAA CTAATATCGA TAAAGACTTA AACGCTCTTC ATTAATGTCA ATATTTATTG 97399 .......... .......... .......... .......... .......... .......... 310 CCTCTAAAAG ATGTTTATGT TGTAGTGTTA GTTCCCTTAT TGCTTTTGAA AAATGAACTC 97459 .......... .......... .......... .......... .......... .......... 310 AACTCTTAGG GAATACTAGT TTCCTTATAT TACTTTGGAG GAATATCTTC AACTCTTTAA 97519 .......... .......... .......... .......... .......... .......... 310 TCTTTACTTA ACCTGAAACT TGGGCCTTAA AATGAAATCA AAATGTTTAA TAAAGACTCT 97579 ||| || | | | .......... .......... .......... .......... .....TTTGT AAATTATTTT 325 TGA-AACTTT AAGAACTTT- -TCTTTGACT TACTTTTTAA CGTCTAAACG TAACTCTTAA 97636 ||| |||||| | |||||| | ||||||| || || |||| | |||| || | |||||||| TGAGAACTTT ATAAACTTTG CTTTTTGACT TAGTTCTTAA CTTCTAGACT TGACTCTTAA 385 CTTTCCTTGA ATTGAAGTAT ATATTCAAGG TTCATGATCT CATGTTTATG GATGATTTCA 97696 |||| |||| ||||| ||| |||||||| ||||| |||| |||||||||| ||||||||| ATTTCATTGA ATTGATATAT GGATTCAAGG TTCATAATCT CATGTTTATG GATGATTTCT 445 TGATTTTCAA CTTGGAGGAT TCATGCGAAA TTATGAGCAT GAACTACTCA ACTCGAGAAC 97756 || ||||||| |||||| | |||||||||| |||||||||| |||||| | || |||||| TGTTTTTCAA ATTGGAGAGT TCATGCGAAA TTATGAGCAT TAACTACGAA ACACGAGAAG 505 CCAAAGGTAC TTATCATCTC AAGATTATTC GACTTATAGG GTTTATGTGA AATTATGGGC 97816 |||| ||| || ||||||| |||| ||||| |||| |||| ||| ||| | |||||||| TCAAAATTAC TT-TCATCTC AAGACTATTC AACTTTTAGG GTTCATGCGG GATTATGGGA 564 ATGAACAATT CAACTCAAGG ATTTCATGGG TCACATGAAA TAGTCCCATG ATTAGAAATA 97876 || ||||||| |||||||||| |||||| ||| | | || || |||||||||| |||| ||||| ATAAACAATT CAACTCAAGG ATTTCACGGG TAATGTGTAA TAGTCCCATG ATTATAAATA 624 TAATTTCAAA 97886 |||| | ||| TAATCTTAAA 634 hqPGS_C08HBa0197A05.1+_SGN-E378946+ (97565 97886) ******************************************************************************** EST sequence 1 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 98455 to 106043): Exon 1 103042 103197 ( 156 n); cDNA 388 541 ( 154 n); score: 0.785 Intron 1 103198 103596 ( 399 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 2 103597 103635 ( 39 n); cDNA 542 580 ( 39 n); score: 0.641 Intron 2 103636 104139 ( 504 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 104140 104168 ( 29 n); cDNA 581 608 ( 28 n); score: 0.862 Intron 3 104169 104804 ( 636 n); Pd: 0.000 (s: 0), Pa: 0.264 (s: 0) Exon 4 104805 104811 ( 7 n); cDNA 609 615 ( 7 n); score: 1.000 MATCH C08HBa0197A05.1+ SGN-E578389+ 0.785 231 0.330 C PGS_C08HBa0197A05.1+_SGN-E578389+ (103042 103197,103597 103635,104140 104168,104805 104811) Alignment (genomic DNA sequence = upper lines): TGGGAAAAGG GTCTGATATA CCCCTCAACT TTGTCATTTA GAGCTGATAT A-CCCTTGTT 103100 |||||||||| || ||||||| |||||||||| ||||||||| | ||||||| | |||| ||| TGGGAAAAGG GTATGATATA CCCCTCAACT TTGTCATTTG AAACTGATAT ACCCCTCGTT 447 ATGAAAGTGG CTCATATATA CCCCTACTTG TAAACAAATG GCTCACATAT ATCCTTTTCC 103160 |||||||||| |||||||||| ||| ||| || ||||||| | |||||||| | ||| | || ATGAAAGTGG CTCATATATA CCCTTACCGT TATACAAATG GTTCACATAT A-CCTCTGCC 506 TCTAACGGAA ATGAAAAAAA TAATAATTTT AATCTAAGTT TTTATTAATT TTTTCTAAAA 103220 | || || |||| | ||| || || ||| -GTTAC-AAA ATGAGCTCAT ATATACCCTT CATTTAA... .......... .......... 541 AATATAATCC TATATGAGTA AATTTAATCC TCGTCAAACA TTTTTTTGAT TTTTTTTGTT 103280 .......... .......... .......... .......... .......... .......... 541 TCAATGACTA ATTTATAATT ATTATTTTGA TAATCAAATA TATTTAGGTT TCACTAATAT 103340 .......... .......... .......... .......... .......... .......... 541 TCTTGTAAAA CTTATTGTAG ATGACCAAAT TTTTTATTCG AATACGAAAT TAAATTACAA 103400 .......... .......... .......... .......... .......... .......... 541 TACATACAAA AGAAATAGTT TTATTTTTTT CTCTTTAAAC TAAGGAATAT AAGAAAAAAC 103460 .......... .......... .......... .......... .......... .......... 541 CAAATAAGAA TAAGAAACTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA 103520 .......... .......... .......... .......... .......... .......... 541 TGAAAAAAAT TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAC CCCTAAATAA 103580 .......... .......... .......... .......... .......... .......... 541 TTTTTAAAAA AAAATTTGAA GGAATAAATA TAAATTTAAA ACTAATTTTT TAACTTCCGT 103640 ||| | ||| | | | ||| || | | || || | ||| .......... ......CGAA AGTGAAAAAA TTACTTTTAA ATTTATAATT TTACT..... 580 TAAATGAAGG GTATATGTGA CTCATTTTGT AACGCCAGGG GTATATGTAA GCCGTTTGTA 103700 .......... .......... .......... .......... .......... .......... 580 TAACAGTAAG GACATATATG AGTAACTTTT ATAACGAGGG ATATATCAGC TCTAAATGAC 103760 .......... .......... .......... .......... .......... .......... 580 AAAGTTGAGG GGTATATCAG ACCCTTATCC CTTTTCGAGT TTTTGAAGTT GTGTTTGTAC 103820 .......... .......... .......... .......... .......... .......... 580 ATTCATTTTA CTTGAATTTT TTTAAAGTTC TGTGAATGAA ATGTCCTAAA AGCTAGAGAA 103880 .......... .......... .......... .......... .......... .......... 580 GTTGAATAAA AATAAATATC AGACAAAATC CTGTCAAATT GGTCAAAATA ATTATTTAAA 103940 .......... .......... .......... .......... .......... .......... 580 GATATTGTCA ATTAACTATT TAAACATAAT TCTCAAAAGA TATTGTCAAA CAAACATTTA 104000 .......... .......... .......... .......... .......... .......... 580 CACAAAAATT GATATCCTAA TAATCTATAA CCAAATTAAT GCTAGTGCAA TAAATAATTG 104060 .......... .......... .......... .......... .......... .......... 580 TCAAGTTCTT GACATATTTT CTATAAATTT GTCATACACC AAGCTCAATA TTCTCCATCC 104120 .......... .......... .......... .......... .......... .......... 580 TAGCTGATTG GTTTGTTTGT TAATTTTTAA AAAAAATGAT ATCTAGGTAT AATATTGGTG 104180 | ||||||| || ||||||| || || |||| .......... .........T TAATTTTAAA AAAAAAT-AT ATTTAGGG.. .......... 608 TATTTTTCCT TGTTTTGGTC TCAATATCTG TTAATACTGA AGGTCATAGT ATCTCTCAAT 104240 .......... .......... .......... .......... .......... .......... 608 TCTTAACCCG AAAAACAAAA GGAACCAAAT GGGCTGTCCT AGTTGCTGGG TCTCGTGGCT 104300 .......... .......... .......... .......... .......... .......... 608 GGATTAATTA TAGGCATCAG GTTATCATCC GAAATTATTC TTTTATATAT ATATATAGCC 104360 .......... .......... .......... .......... .......... .......... 608 TAACAATTTT TTTATGATTC AATTCCTTGT AAACATTAAC TACTAGTCTT GATGATGGAT 104420 .......... .......... .......... .......... .......... .......... 608 ACATGACATT ATTGATGTGA ATGTTTTACT ACGATGTGAA TGTTTGATTA TTTAATTATT 104480 .......... .......... .......... .......... .......... .......... 608 TGTGGTAACT TAAGTGATCC GATTATATCT TCATCAACAT CTATCAATTT TTTCTTGTGT 104540 .......... .......... .......... .......... .......... .......... 608 TTTGTGAATC ATGTGACTAT TATTGATTGT TTATGTTTCC TATAGGTCTT GATATAATTG 104600 .......... .......... .......... .......... .......... .......... 608 AATTTGATTG TCCTACAATT AGTGCCTGAA GATGATTCAC ACCGAACCAC AAAAAAATCA 104660 .......... .......... .......... .......... .......... .......... 608 AGAAATTCAC AAAATGTAAA GTTGAAAAAT CTAATACTTT TATTTGACTT AAAACTTTAA 104720 .......... .......... .......... .......... .......... .......... 608 ACTCTTTTTG TATTTGATAA TATCAAATTA CTGCCAACTT ATAGTCCCAA AACGCATTAT 104780 .......... .......... .......... .......... .......... .......... 608 TTTACCAGAG TTTGTGTTTA ATAGGCATAT A 104811 |||||| | .......... .......... ....GCATAT A 615 hqPGS_C08HBa0197A05.1+_SGN-E578389+ (103042 103197,103597 103635,104140 104168) ******************************************************************************** EST sequence 21 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 102503 to 107956): Exon 1 103264 103630 ( 367 n); cDNA 1 365 ( 365 n); score: 0.881 Intron 1 103631 103678 ( 48 n); Pd: 0.000 (s: 0.86), Pa: 0.550 (s: 0) Exon 2 103679 103705 ( 27 n); cDNA 366 391 ( 26 n); score: 0.667 Intron 2 103706 103742 ( 37 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70) Exon 3 103743 103786 ( 44 n); cDNA 392 433 ( 42 n); score: 0.705 Intron 3 103787 106774 (2988 n); Pd: 0.000 (s: 0.70), Pa: 0.989 (s: 0) Exon 4 106775 106810 ( 36 n); cDNA 434 465 ( 32 n); score: 0.583 Intron 4 106811 106948 ( 138 n); Pd: 0.477 (s: 0), Pa: 0.998 (s: 0) Exon 5 106949 106959 ( 11 n); cDNA 466 476 ( 11 n); score: 0.636 Intron 5 106960 107245 ( 286 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 6 107246 107254 ( 9 n); cDNA 477 484 ( 8 n); score: 0.889 MATCH C08HBa0197A05.1+ SGN-E542827+ 0.881 494 0.792 C PGS_C08HBa0197A05.1+_SGN-E542827+ (103264 103630,103679 103705,103743 103786,106775 106810,106949 106959,107246 107254) Alignment (genomic DNA sequence = upper lines): TTTTGATTTT TTTTGTTTCA ATGACTAATT TATAATTATT ATTTTGATAA TCAAATATAT 103323 |||| |||| ||||| || | |||||||||| |||||||||| |||||||||| |||||| ||| TTTTCTTTTT TTTTGGTT-A ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 59 TTAGGTTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAATTTT TTATTCGAAT 103383 ||| ||||| |||||||||| |||||||||| |||||||||| |||||| ||| || || |||| TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAC ATACAAAAGA AATAGTTT-T ATTTTTTTCT CTTTAAACTA 103442 || ||||||| |||||||||| | |||||| | |||||||| ||||||||| |||||||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTTTTTCT CTTTAAACTA 179 AGGAATATAA GAAAAAACCA AATAAGAATA AGAAACTCAA ATAATTATAA TAAAAGAAGT 103502 |||||| || | ||||| | ||| |||||| | |||||||| |||||||||| |||||||||| AGGAATGAAA G-AAAAA--A AATTAGAATA ACAAACTCAA ATAATTATAA TAAAAGAAGT 236 CAAAAAATAA TTTATGTATG AAAAAAATTA AA-ATATACC TTGAACTTTG ATAGAAGAAT 103561 |||| ||||| ||||||||| |||||||||| || ||| ||| | |||||||| |||||||||| CAAACAATAA TTTATGTATA AAAAAAATTA AATATA-ACC TCGAACTTTG ATAGAAGAAT 295 CATATATACC CCTAAATAA- TTTTTAAAAA AAAATTTGAA GGAATAAATA TAAATTTAAA 103620 ||||||||| ||||||| ||||| |||| | ||| || | |||||||| |||||||||| AATATATACC TTTAAATAAT TTTTTTAAAA ACAATCAAAA GTAATAAATA TAAATTTAAA 355 ACTAATTTTT TAACTTCCGT TAAATGAAGG GTATATGTGA CTCATTTTGT AACGCCAGGG 103680 | |||||||| ATTAATTTTT .......... .......... .......... .......... ........TA 367 GTATATGTAA GCCGTTTGTA TAACAGTAAG GACATATATG AGTAACTTTT ATAACGAGGG 103740 ||||| | | ||| ||| | |||| ATATATATTA GCCATTT-TG TAACG..... .......... .......... .......... 391 ATATATCAGC TCTAAATGAC AAAGTTGAGG GGTATATCAG ACCCTTATCC CTTTTCGAGT 103800 | | || | ||||||| ||| ||||| ||||||| | | || ..ACA-GTGC TGCAAATGAC AAAATTGAGA AATATATCA- AACTTT.... .......... 433 TTTTGAAGTT GTGTTTGTAC ATTCATTTTA CTTGAATTTT TTTAAAGTTC TGTGAATGAA 103860 .......... .......... .......... .......... .......... .......... 433 ATGTCCTAAA AGCTAGAGAA GTTGAATAAA AATAAATATC AGACAAAATC CTGTCAAATT 103920 .......... .......... .......... .......... .......... .......... 433 GGTCAAAATA ATTATTTAAA GATATTGTCA ATTAACTATT TAAACATAAT TCTCAAAAGA 103980 .......... .......... .......... .......... .......... .......... 433 TATTGTCAAA CAAACATTTA CACAAAAATT GATATCCTAA TAATCTATAA CCAAATTAAT 104040 .......... .......... .......... .......... .......... .......... 433 GCTAGTGCAA TAAATAATTG TCAAGTTCTT GACATATTTT CTATAAATTT GTCATACACC 104100 .......... .......... .......... .......... .......... .......... 433 AAGCTCAATA TTCTCCATCC TAGCTGATTG GTTTGTTTGT TAATTTTTAA AAAAAATGAT 104160 .......... .......... .......... .......... .......... .......... 433 ATCTAGGTAT AATATTGGTG TATTTTTCCT TGTTTTGGTC TCAATATCTG TTAATACTGA 104220 .......... .......... .......... .......... .......... .......... 433 AGGTCATAGT ATCTCTCAAT TCTTAACCCG AAAAACAAAA GGAACCAAAT GGGCTGTCCT 104280 .......... .......... .......... .......... .......... .......... 433 AGTTGCTGGG TCTCGTGGCT GGATTAATTA TAGGCATCAG GTTATCATCC GAAATTATTC 104340 .......... .......... .......... .......... .......... .......... 433 TTTTATATAT ATATATAGCC TAACAATTTT TTTATGATTC AATTCCTTGT AAACATTAAC 104400 .......... .......... .......... .......... .......... .......... 433 TACTAGTCTT GATGATGGAT ACATGACATT ATTGATGTGA ATGTTTTACT ACGATGTGAA 104460 .......... .......... .......... .......... .......... .......... 433 TGTTTGATTA TTTAATTATT TGTGGTAACT TAAGTGATCC GATTATATCT TCATCAACAT 104520 .......... .......... .......... .......... .......... .......... 433 CTATCAATTT TTTCTTGTGT TTTGTGAATC ATGTGACTAT TATTGATTGT TTATGTTTCC 104580 .......... .......... .......... .......... .......... .......... 433 TATAGGTCTT GATATAATTG AATTTGATTG TCCTACAATT AGTGCCTGAA GATGATTCAC 104640 .......... .......... .......... .......... .......... .......... 433 ACCGAACCAC AAAAAAATCA AGAAATTCAC AAAATGTAAA GTTGAAAAAT CTAATACTTT 104700 .......... .......... .......... .......... .......... .......... 433 TATTTGACTT AAAACTTTAA ACTCTTTTTG TATTTGATAA TATCAAATTA CTGCCAACTT 104760 .......... .......... .......... .......... .......... .......... 433 ATAGTCCCAA AACGCATTAT TTTACCAGAG TTTGTGTTTA ATAGGCATAT ATTGAATGAA 104820 .......... .......... .......... .......... .......... .......... 433 GTCACATAGA ATAATAAAGT TCAAGCAAGT GTTAACTACC TAGAAATTCT CACCCAAAAA 104880 .......... .......... .......... .......... .......... .......... 433 AAGAAGAAAT ACATTTTAAT CAAAATAAAA AGAAGAAATA AGAACTATAT ACCCACACTC 104940 .......... .......... .......... .......... .......... .......... 433 TTATTTTATC TTGAACTCTA AAAAAAATCA CTTATATATT CTATAAAAAA TTTCTCTCAA 105000 .......... .......... .......... .......... .......... .......... 433 TTCACTTAAT ATGTACTAAA GAAAATTACT CTAATCAAAT TTAACACACT TTTTAGCCGT 105060 .......... .......... .......... .......... .......... .......... 433 TCAAAAACTA AATTACCTTT CAACAAATGA AAACAATGTA ACTTTAAAAT ATTATTTCAT 105120 .......... .......... .......... .......... .......... .......... 433 AGTTGATAAA TGATTTATAG TTGATCAGGA GTAATACAAA TTAACAAATT TTAAGAATAT 105180 .......... .......... .......... .......... .......... .......... 433 TTATTTCTGT TTTAAATTTT GTGTCAAGTC AAACAATTCA TCATAGCTAC AAAAATGTGA 105240 .......... .......... .......... .......... .......... .......... 433 ATATAACTTG ATTGTATAAT TTTAGGCTGA TGTGTGCCAC GCTTACCAAA TATTGAAGGT 105300 .......... .......... .......... .......... .......... .......... 433 TGGTGGTCTT AAGGATGAGA ACATCATTGT ATTCATGTAC GATGATATTG CTAACAATAC 105360 .......... .......... .......... .......... .......... .......... 433 AGCAAACCCT AGACCTGGTG TCATAATCAA TAACCCACAT GGTCATAATG TTTATAAAGG 105420 .......... .......... .......... .......... .......... .......... 433 TGTCCCAAAG GTTTGTTCTT TTTGTGTTCA ATTTTTGGGA AGTTTCAAGA TTATTAGAGT 105480 .......... .......... .......... .......... .......... .......... 433 GTTTGTTAGC TAAAGAAGGT TTTCTCTTCT CTTTTTGTTG AGGCAGGATT ATGTAGGTGA 105540 .......... .......... .......... .......... .......... .......... 433 TGATGTTAAT GCTAAAAACT TTTTCAATGT CATCCTTGCC AACAAAAGTG GTGTTGTTGG 105600 .......... .......... .......... .......... .......... .......... 433 GGGAAGTGGT AAAGTTTTGA AGAGTGGTCC AAATGACCAT ATCTTCATAT ACTATACTGA 105660 .......... .......... .......... .......... .......... .......... 433 TCATGGTAGC CCTGGAATGA TTAGTAAGTA TCTTATTTGC ATTAATTTTG TTTACTCAAC 105720 .......... .......... .......... .......... .......... .......... 433 TAATACACCT TTTGTCCAAA TTTATGCGTC TTACTTTCCT TTTTGGTCTG TCAAGTTTCT 105780 .......... .......... .......... .......... .......... .......... 433 TTTTACATTT AGTAAGTTTT TCAATTTTGA TATTCCATAT GCAAGTTTAA CACCACAAGA 105840 .......... .......... .......... .......... .......... .......... 433 TCAAAAAGTC TTAAACTTCG TGACTCTTAA ATTGGGACAA TGGAAGTAGT TATTATCTCA 105900 .......... .......... .......... .......... .......... .......... 433 AAAAGTTAGT TTGTTTGTTG AAAAGAATTG GAATCAAGAA GAAATGTGAC TTTCTGACAT 105960 .......... .......... .......... .......... .......... .......... 433 AATAAATTTA TTACTTGAGT GATTATGTGA GAAATGAGAC CCTATTTTGA AGTTGTGAAA 106020 .......... .......... .......... .......... .......... .......... 433 ATGTAAAATT CTAATAAGAA ATTCCAAAAT CACGATTGAA TGTTATACAC TTGGTTATCG 106080 .......... .......... .......... .......... .......... .......... 433 AATATATGGA TAATGGGAAA ATTTCCGTCT AATGACATAG TTAGGCAATT GGATAATTAA 106140 .......... .......... .......... .......... .......... .......... 433 GCTAATGCTC GTTACAAATC AAAGCATGCA ATTTGTGATA CTTTGGAACT GATATATGCA 106200 .......... .......... .......... .......... .......... .......... 433 TAATTGTTTT CTTGTTTATC AGTAATGCCA AGTGGAGAGC CGATTTATGC AGATGAACTA 106260 .......... .......... .......... .......... .......... .......... 433 TTTAACGTGT TGAAAAAGAA GCATGCATCA AAGACGTATG ACAAACTGGT AACTTGCTTG 106320 .......... .......... .......... .......... .......... .......... 433 CTTTAGATTT TTCAAGCTTT CTTTCCCTTT TCTCAAATGT TTGATCAATG AAATTTAAAA 106380 .......... .......... .......... .......... .......... .......... 433 TTTGTATTTT ATGTTGGATG ATGTTCAGGT GTTTTACCTA GAAGCCTGTG AATCTGGAAG 106440 .......... .......... .......... .......... .......... .......... 433 CATATTTGAC GGTATTCTCC CCAAAGGACT TAATATCTAT GCCATGACTG CATCTAAACC 106500 .......... .......... .......... .......... .......... .......... 433 CAATGAAGAT AGTTTTGGCA CATACTGTGG TGAGAGTACT CCTATTGATT CCTGTTGGGG 106560 .......... .......... .......... .......... .......... .......... 433 TCAGTGCCCC CCTCCGGAGT TTAAGGGTCT TTGCTTAGGA GACTTGTTCA GTGTTGCCTG 106620 .......... .......... .......... .......... .......... .......... 433 GATGGAAGAT AGGTATAAAG AATTTTTATA ACCTCTGTTC TCGTAGTTCA CATTGTTAGA 106680 .......... .......... .......... .......... .......... .......... 433 AAAAAGAATA AATTCTAGTA AATTTTTTTC TGATCATTTA TACTTTGAAA TGTTGAATTA 106740 .......... .......... .......... .......... .......... .......... 433 TGTCAAACTA ATTATTGTTT GCACCTATGA ACAGTGATGT ACAAGATAGA AAAACTAACA 106800 | || | || ||||| ||||| | | .......... .......... .......... ....TTCCGT A-AA-ATAGA TAAACTTA-A 456 CCTTGCATGG GCAGTATATT CGAGTAAGAG TTTATACAGT TATATATGGA CAAATATTGC 106860 | || AAGAGGAT-A .......... .......... .......... .......... .......... 465 ATATATTTTA AGCAATTTGT TTGGGCAATG CCTATGTTTT CTTTATTCCA TTTTCATGAA 106920 .......... .......... .......... .......... .......... .......... 465 AGATTTATGA TTTCATTTTG TCGCTCAGGT TGCAAAAAGA ACTGCTGCCA ACTTAACATA 106980 | || ||| | .......... .......... ........TT TGTAAACAA. .......... .......... 476 TGATAAGTAT GGCTCCCATG TCAAAGAATA TGGTGATAAA GTGGTGAGTT TTGATCCTCT 107040 .......... .......... .......... .......... .......... .......... 476 TGTTGTATAT ATGGGTGAAA CTTCCAAAAA TCACAGCCAT GACTCTGTGG ATGCAAAGTC 107100 .......... .......... .......... .......... .......... .......... 476 ATTCTCAACA TCATCATCAA GGAATGTGGA TCAGAGAAGT ACTGAACTTT TCTATTTGGT 107160 .......... .......... .......... .......... .......... .......... 476 CATAAAAGTA TGTTCTCTAC CTCTTTTTGA TGGAGATTCA TCTTCCTATA CATGATTCAG 107220 .......... .......... .......... .......... .......... .......... 476 TAATGTTCTT TCTTAATGTT TGCAGCACCA AAAT 107254 || || |||| .......... .......... .....CA-CA AAAT 484 hqPGS_C08HBa0197A05.1+_SGN-E542827+ (103264 103630,103679 103705,103743 103786) ******************************************************************************** EST sequence 19 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 102752 to 104646): Exon 1 103352 103786 ( 435 n); cDNA 1 435 ( 435 n); score: 0.905 MATCH C08HBa0197A05.1+ SGN-E243215+ 0.905 435 0.946 C PGS_C08HBa0197A05.1+_SGN-E243215+ (103352 103786) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACCAAATT TTTTATTCGA ATACGAAATT AAATTACAAT ACATACAAAA 103411 |||||||||| ||||| |||| |||| ||||| |||||||||| |||||||||| ||| |||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 GAAATAGTTT TATTTTTTTC TCTTTAAACT AAGGAATATA AG-AAAAAAC CAAATAAGAA 103470 ||||| ||| | |||||| | |||||||| ||||||| | || ||||||| ||||||||| AAAATA-TTT GAATTTTTTT TATTTAAACT AAGGAATGAA AGAAAAAAAC AAAATAAGAA 118 TAAGAAACTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA TGAAAAAAAT 103530 |||||||||| |||| ||||| |||||||||| |||||||||| ||||| |||| || ||||||| TAAGAAACTC AAATTATTAT AATAAAAGAA GTCAAAAAAT AATTTTTGTA TG-AAAAAAT 177 TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAC CCCTAAATA- -ATTTTTAAA 103588 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||| TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAT CCCTAAATAT TTTTTTTAAA 237 AAAAAATTTG AAGGAATAAA TATAAATTTA AAACTAATTT TTTAACTTCC GTTAAATGAA 103648 |||||||| | ||| || ||| |||||||||| |||||||||| |||||||| | |||||||||| AAAAAATTAG AAGTAACAAA TATAAATTTA AAACTAATTT TTTAACTTTC GTTAAATGAA 297 GGGTATATGT GACTCATTTT GTAACGCCAG GGGTATATGT AAGCCGTTTG TATAACAGTA 103708 |||||||||| || |||||| ||||| ||| |||||||||| ||||||||| |||||| || GGGTATATGT GAGCCATTTT CTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGATA 357 AGGACATATA TGAGTAACTT TTATAACGAG GGATATATCA GCTCTAAATG ACAAAGTTGA 103768 ||| |||||| ||| |||| |||| ||||| |||||||||| |||||||||| |||||||||| AGGGCATATA TGAACCACTT TTATTACGAG GGATATATCA GCTCTAAATG ACAAAGTTGA 417 GGGGTATATC AGACCCTT 103786 | |||||||| |||||||| GAGGTATATC AGACCCTT 435 hqPGS_C08HBa0197A05.1+_SGN-E243215+ (103352 103786) ******************************************************************************** EST sequence 43 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 102869 to 110412): Exon 1 103479 103792 ( 314 n); cDNA 1 314 ( 314 n); score: 0.846 Intron 1 103793 107220 (3428 n); Pd: 0.000 (s: 0.88), Pa: 0.396 (s: 0) Exon 2 107221 107252 ( 32 n); cDNA 315 347 ( 33 n); score: 0.547 Intron 2 107253 108509 (1257 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 3 108510 108525 ( 16 n); cDNA 348 363 ( 16 n); score: 0.625 MATCH C08HBa0197A05.1+ SGN-E578389- 0.846 362 0.516 C PGS_C08HBa0197A05.1+_SGN-E578389- (103479 103792,107221 107252,108510 108525) Alignment (genomic DNA sequence = upper lines): TCAAATAATT ATAATAAAAG AAGTCA-AAA AATAATTTAT GTATGAAAAA AA-TTAAAAT 103536 |||||||||| ||||||| | |||||| ||| |||||||||| |||| ||||| || || |||| TCAAATAATT ATAATAA-AT AAGTCAAAAA AATAATTTAT GTATTAAAAA AATTTGAAAT 59 ATACCTTGAA CTTTGATAGA AGAATCATAT ATACCCCTAA ATAATTTTTA AAAAAAAATT 103596 |||||||||| |||||| | | |||||||||| || ||||||| ||| |||| |||| | ATACCTTGAA CTTTGAAAAA AGAATCATAT ATGCCCCTAA ATATATTTTT TTTTAAAA-T 118 TGAAGGAATA AATATAAATT TAAAACTAAT TTTTTAACTT CCGTTAAATG AAGGGTATAT 103656 | ||| || | | |||||||| ||||| |||| ||||| |||| ||||||||| |||||||||| TAAAGTAA-A ATTATAAATT TAAAAGTAAT TTTTTCACTT TCGTTAAATG AAGGGTATAT 177 GTGA-CTCAT TTTGTAACGC CAGGGGTATA TGTAAGCCGT TTGTATAACA GTAAGGACAT 103715 ||| ||||| ||||||||| ||| |||||| ||| | || | ||||||||| |||||| || ATGAGCTCAT TTTGTAACGG CAGAGGTATA TGTGAACCAT TTGTATAACG GTAAGGGTAT 237 ATATGAGTAA CTTTTATAAC GAGGGATATA TCAGCTCTAA ATGACAAAGT TGAGGGGTAT 103775 ||||||| | |||| ||||| ||||| |||| |||| | || |||||||||| |||||||||| ATATGAGCCA CTTTCATAAC GAGGGGTATA TCAGTTTCAA ATGACAAAGT TGAGGGGTAT 297 ATCAGACCCT TATCCCTTTT CGAGTTTTTG AAGTTGTGTT TGTACATTCA TTTTACTTGA 103835 |||| ||||| | |||| ATCATACCCT TTTCCCA... .......... .......... .......... .......... 314 ATTTTTTTAA AGTTCTGTGA ATGAAATGTC CTAAAAGCTA GAGAAGTTGA ATAAAAATAA 103895 .......... .......... .......... .......... .......... .......... 314 ATATCAGACA AAATCCTGTC AAATTGGTCA AAATAATTAT TTAAAGATAT TGTCAATTAA 103955 .......... .......... .......... .......... .......... .......... 314 CTATTTAAAC ATAATTCTCA AAAGATATTG TCAAACAAAC ATTTACACAA AAATTGATAT 104015 .......... .......... .......... .......... .......... .......... 314 CCTAATAATC TATAACCAAA TTAATGCTAG TGCAATAAAT AATTGTCAAG TTCTTGACAT 104075 .......... .......... .......... .......... .......... .......... 314 ATTTTCTATA AATTTGTCAT ACACCAAGCT CAATATTCTC CATCCTAGCT GATTGGTTTG 104135 .......... .......... .......... .......... .......... .......... 314 TTTGTTAATT TTTAAAAAAA ATGATATCTA GGTATAATAT TGGTGTATTT TTCCTTGTTT 104195 .......... .......... .......... .......... .......... .......... 314 TGGTCTCAAT ATCTGTTAAT ACTGAAGGTC ATAGTATCTC TCAATTCTTA ACCCGAAAAA 104255 .......... .......... .......... .......... .......... .......... 314 CAAAAGGAAC CAAATGGGCT GTCCTAGTTG CTGGGTCTCG TGGCTGGATT AATTATAGGC 104315 .......... .......... .......... .......... .......... .......... 314 ATCAGGTTAT CATCCGAAAT TATTCTTTTA TATATATATA TAGCCTAACA ATTTTTTTAT 104375 .......... .......... .......... .......... .......... .......... 314 GATTCAATTC CTTGTAAACA TTAACTACTA GTCTTGATGA TGGATACATG ACATTATTGA 104435 .......... .......... .......... .......... .......... .......... 314 TGTGAATGTT TTACTACGAT GTGAATGTTT GATTATTTAA TTATTTGTGG TAACTTAAGT 104495 .......... .......... .......... .......... .......... .......... 314 GATCCGATTA TATCTTCATC AACATCTATC AATTTTTTCT TGTGTTTTGT GAATCATGTG 104555 .......... .......... .......... .......... .......... .......... 314 ACTATTATTG ATTGTTTATG TTTCCTATAG GTCTTGATAT AATTGAATTT GATTGTCCTA 104615 .......... .......... .......... .......... .......... .......... 314 CAATTAGTGC CTGAAGATGA TTCACACCGA ACCACAAAAA AATCAAGAAA TTCACAAAAT 104675 .......... .......... .......... .......... .......... .......... 314 GTAAAGTTGA AAAATCTAAT ACTTTTATTT GACTTAAAAC TTTAAACTCT TTTTGTATTT 104735 .......... .......... .......... .......... .......... .......... 314 GATAATATCA AATTACTGCC AACTTATAGT CCCAAAACGC ATTATTTTAC CAGAGTTTGT 104795 .......... .......... .......... .......... .......... .......... 314 GTTTAATAGG CATATATTGA ATGAAGTCAC ATAGAATAAT AAAGTTCAAG CAAGTGTTAA 104855 .......... .......... .......... .......... .......... .......... 314 CTACCTAGAA ATTCTCACCC AAAAAAAGAA GAAATACATT TTAATCAAAA TAAAAAGAAG 104915 .......... .......... .......... .......... .......... .......... 314 AAATAAGAAC TATATACCCA CACTCTTATT TTATCTTGAA CTCTAAAAAA AATCACTTAT 104975 .......... .......... .......... .......... .......... .......... 314 ATATTCTATA AAAAATTTCT CTCAATTCAC TTAATATGTA CTAAAGAAAA TTACTCTAAT 105035 .......... .......... .......... .......... .......... .......... 314 CAAATTTAAC ACACTTTTTA GCCGTTCAAA AACTAAATTA CCTTTCAACA AATGAAAACA 105095 .......... .......... .......... .......... .......... .......... 314 ATGTAACTTT AAAATATTAT TTCATAGTTG ATAAATGATT TATAGTTGAT CAGGAGTAAT 105155 .......... .......... .......... .......... .......... .......... 314 ACAAATTAAC AAATTTTAAG AATATTTATT TCTGTTTTAA ATTTTGTGTC AAGTCAAACA 105215 .......... .......... .......... .......... .......... .......... 314 ATTCATCATA GCTACAAAAA TGTGAATATA ACTTGATTGT ATAATTTTAG GCTGATGTGT 105275 .......... .......... .......... .......... .......... .......... 314 GCCACGCTTA CCAAATATTG AAGGTTGGTG GTCTTAAGGA TGAGAACATC ATTGTATTCA 105335 .......... .......... .......... .......... .......... .......... 314 TGTACGATGA TATTGCTAAC AATACAGCAA ACCCTAGACC TGGTGTCATA ATCAATAACC 105395 .......... .......... .......... .......... .......... .......... 314 CACATGGTCA TAATGTTTAT AAAGGTGTCC CAAAGGTTTG TTCTTTTTGT GTTCAATTTT 105455 .......... .......... .......... .......... .......... .......... 314 TGGGAAGTTT CAAGATTATT AGAGTGTTTG TTAGCTAAAG AAGGTTTTCT CTTCTCTTTT 105515 .......... .......... .......... .......... .......... .......... 314 TGTTGAGGCA GGATTATGTA GGTGATGATG TTAATGCTAA AAACTTTTTC AATGTCATCC 105575 .......... .......... .......... .......... .......... .......... 314 TTGCCAACAA AAGTGGTGTT GTTGGGGGAA GTGGTAAAGT TTTGAAGAGT GGTCCAAATG 105635 .......... .......... .......... .......... .......... .......... 314 ACCATATCTT CATATACTAT ACTGATCATG GTAGCCCTGG AATGATTAGT AAGTATCTTA 105695 .......... .......... .......... .......... .......... .......... 314 TTTGCATTAA TTTTGTTTAC TCAACTAATA CACCTTTTGT CCAAATTTAT GCGTCTTACT 105755 .......... .......... .......... .......... .......... .......... 314 TTCCTTTTTG GTCTGTCAAG TTTCTTTTTA CATTTAGTAA GTTTTTCAAT TTTGATATTC 105815 .......... .......... .......... .......... .......... .......... 314 CATATGCAAG TTTAACACCA CAAGATCAAA AAGTCTTAAA CTTCGTGACT CTTAAATTGG 105875 .......... .......... .......... .......... .......... .......... 314 GACAATGGAA GTAGTTATTA TCTCAAAAAG TTAGTTTGTT TGTTGAAAAG AATTGGAATC 105935 .......... .......... .......... .......... .......... .......... 314 AAGAAGAAAT GTGACTTTCT GACATAATAA ATTTATTACT TGAGTGATTA TGTGAGAAAT 105995 .......... .......... .......... .......... .......... .......... 314 GAGACCCTAT TTTGAAGTTG TGAAAATGTA AAATTCTAAT AAGAAATTCC AAAATCACGA 106055 .......... .......... .......... .......... .......... .......... 314 TTGAATGTTA TACACTTGGT TATCGAATAT ATGGATAATG GGAAAATTTC CGTCTAATGA 106115 .......... .......... .......... .......... .......... .......... 314 CATAGTTAGG CAATTGGATA ATTAAGCTAA TGCTCGTTAC AAATCAAAGC ATGCAATTTG 106175 .......... .......... .......... .......... .......... .......... 314 TGATACTTTG GAACTGATAT ATGCATAATT GTTTTCTTGT TTATCAGTAA TGCCAAGTGG 106235 .......... .......... .......... .......... .......... .......... 314 AGAGCCGATT TATGCAGATG AACTATTTAA CGTGTTGAAA AAGAAGCATG CATCAAAGAC 106295 .......... .......... .......... .......... .......... .......... 314 GTATGACAAA CTGGTAACTT GCTTGCTTTA GATTTTTCAA GCTTTCTTTC CCTTTTCTCA 106355 .......... .......... .......... .......... .......... .......... 314 AATGTTTGAT CAATGAAATT TAAAATTTGT ATTTTATGTT GGATGATGTT CAGGTGTTTT 106415 .......... .......... .......... .......... .......... .......... 314 ACCTAGAAGC CTGTGAATCT GGAAGCATAT TTGACGGTAT TCTCCCCAAA GGACTTAATA 106475 .......... .......... .......... .......... .......... .......... 314 TCTATGCCAT GACTGCATCT AAACCCAATG AAGATAGTTT TGGCACATAC TGTGGTGAGA 106535 .......... .......... .......... .......... .......... .......... 314 GTACTCCTAT TGATTCCTGT TGGGGTCAGT GCCCCCCTCC GGAGTTTAAG GGTCTTTGCT 106595 .......... .......... .......... .......... .......... .......... 314 TAGGAGACTT GTTCAGTGTT GCCTGGATGG AAGATAGGTA TAAAGAATTT TTATAACCTC 106655 .......... .......... .......... .......... .......... .......... 314 TGTTCTCGTA GTTCACATTG TTAGAAAAAA GAATAAATTC TAGTAAATTT TTTTCTGATC 106715 .......... .......... .......... .......... .......... .......... 314 ATTTATACTT TGAAATGTTG AATTATGTCA AACTAATTAT TGTTTGCACC TATGAACAGT 106775 .......... .......... .......... .......... .......... .......... 314 GATGTACAAG ATAGAAAAAC TAACACCTTG CATGGGCAGT ATATTCGAGT AAGAGTTTAT 106835 .......... .......... .......... .......... .......... .......... 314 ACAGTTATAT ATGGACAAAT ATTGCATATA TTTTAAGCAA TTTGTTTGGG CAATGCCTAT 106895 .......... .......... .......... .......... .......... .......... 314 GTTTTCTTTA TTCCATTTTC ATGAAAGATT TATGATTTCA TTTTGTCGCT CAGGTTGCAA 106955 .......... .......... .......... .......... .......... .......... 314 AAAGAACTGC TGCCAACTTA ACATATGATA AGTATGGCTC CCATGTCAAA GAATATGGTG 107015 .......... .......... .......... .......... .......... .......... 314 ATAAAGTGGT GAGTTTTGAT CCTCTTGTTG TATATATGGG TGAAACTTCC AAAAATCACA 107075 .......... .......... .......... .......... .......... .......... 314 GCCATGACTC TGTGGATGCA AAGTCATTCT CAACATCATC ATCAAGGAAT GTGGATCAGA 107135 .......... .......... .......... .......... .......... .......... 314 GAAGTACTGA ACTTTTCTAT TTGGTCATAA AAGTATGTTC TCTACCTCTT TTTGATGGAG 107195 .......... .......... .......... .......... .......... .......... 314 ATTCATCTTC CTATACATGA TTCAGTAATG TTCTTTCTTA AT-GTTTGCA GCACCAAAAT 107254 |||| || || || | | ||| | |||| .......... .......... .....TAATA TTATTCATTT TTGGGTTGAC GGGTCAAA.. 347 GCTCCTGAAG GCTCTGATGA GAAATATGAA GCTCGTGTGA AACTAAATGA AGTTATGTCA 107314 .......... .......... .......... .......... .......... .......... 347 CAGAGAAGTC AAGTTGACAA CAATGTAAAA CATCTAGCGG ATCTTCTTTT TGGTGTTGAA 107374 .......... .......... .......... .......... .......... .......... 347 AAAGGTAATG AGATACTACA CAGCGTTCGA CCTGCTGGAC AACCACTTGT TGATAACTGG 107434 .......... .......... .......... .......... .......... .......... 347 GATTGCCTTA AGTCTTATGT AAGTATTTAA CATGGTGATA AAAGCAATGT TTTCTTTGTT 107494 .......... .......... .......... .......... .......... .......... 347 ATTTCAGTTC AATTTTCGTG TTTTGTTCTT TTGATGAAAA TATGACTACT CAACTCTTTA 107554 .......... .......... .......... .......... .......... .......... 347 TAATAGGTCA AGATATTTGA AACACATTGT GGAAGATTAA CAGTTTACGG AAGGAAACAT 107614 .......... .......... .......... .......... .......... .......... 347 GTACGTGGTA TCGCCAACAT CTGCAATGCT GGGATTACAA GTGAGAAAAT GGATGCTATG 107674 .......... .......... .......... .......... .......... .......... 347 TCTGCTCAAG CGTGTTCAAG TTAGTAGAGG GTACTCTTGG TAGTAGGCAA ATATTATGTT 107734 .......... .......... .......... .......... .......... .......... 347 TTGCCAGTTT GTATTAACAA ATAGCTACAT TCAGAAAAGG CTTCTTAGAA GCAGATCTTT 107794 .......... .......... .......... .......... .......... .......... 347 GCCTTGTAAC CATGTACTAA AGCTTTGTTT TCTAAATAAT AATGCCCTTC GAAATTTTTA 107854 .......... .......... .......... .......... .......... .......... 347 TGCATTTAAA AAGTCTTGTT CAGTTCCATT CAAGCTCAAT TTTGTTTGTT TATTTGAAAG 107914 .......... .......... .......... .......... .......... .......... 347 AAAATGATGA AGCATTTAGC CGCTACTAAA TGTATATATA GATCTCATCA ACTCATTAAC 107974 .......... .......... .......... .......... .......... .......... 347 CTAAGTTATT GTACACGACT CTAGTCTTTC TTACTTGAAT TTTAAAAAAA AAAACAATAA 108034 .......... .......... .......... .......... .......... .......... 347 GTGAAGAGAG TTGTATACAA TCATAATTTT GTCCATGTAT TTGGTATGAC TAGGGATGGC 108094 .......... .......... .......... .......... .......... .......... 347 ATAATGGATA AATAATATGG GTATCCATTC ATATTATCCA TTTTAAATGA ATTGGGTATC 108154 .......... .......... .......... .......... .......... .......... 347 CAACTCATTA AAAAATGAAT AAAAAACGAG TAATATCCAT ATTATTCATT AAAAAGTGGA 108214 .......... .......... .......... .......... .......... .......... 347 TAGTTAAATG GATAAAATAG GTAAAACAAA AAAAACACGA TATAGGATTG GGTAGTTAGA 108274 .......... .......... .......... .......... .......... .......... 347 AAGTTTTTAA AAAAATCTAT AAAAAAAATG AAACTTTTTT TACATTTGAT TTGAAAAAGG 108334 .......... .......... .......... .......... .......... .......... 347 GGATGGTAGG GGATAGGGGT GGGGTAGGGT GGGGTGGGGG GCTGGTAGGT GGTAAGGGCT 108394 .......... .......... .......... .......... .......... .......... 347 AGGGGCTAGT AGGCAGTGGG GGTGGAGGGG GTCTAGGGAG CGGGTAGTAA TTTTTTTTCA 108454 .......... .......... .......... .......... .......... .......... 347 AAAAAAAATT AAAAATAGTA ATGAAAAAAT TAATAATTTG GTTAATTGTT TTTAGGGATG 108514 || .......... .......... .......... .......... .......... .....CCTTG 352 GGTTGTTGAG G 108525 || || | || | GGCTGCTTAG G 363 hqPGS_C08HBa0197A05.1+_SGN-E578389- (103479 103792) ******************************************************************************** EST sequence 25 -strand 622 n (File: SGN-E396148-) 1 TTAGCAAAAC TGAGGCTCAG AAAACGCTTA AATGAAGCAA TATCACATAG AATGCACTTA 61 GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG TCCAGAGGTG 121 CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG TCTTAAATCT 181 TATGTAAGAA CATTTGAAAC ACATTGTGGA TCGTTATCTC AGTATGGAAT GAAACATATG 241 CGCTCTGTTG CTAACATATG CAACGCTGGA ATTAAAATGG AGCAGATGGT GGAGGCATCG 301 GCACAAGCTT GTCCCAGTGT TCCATCCTAT ACCTGGAGTT CCCTCCACAG GGGTTTTAGT 361 GCATGATTGG CATGTAATGC GAAATATGCA CGCCTAGATG CTACCAAAAT TATCCGTAAT 421 TATCAGTATG AAGATTGATA TGGTTGTTTG CTAGTGTAAT TGCTTCCTTG TAAATACAGT 481 TTAGAAGCAC ATCAATATTG AGTGGAAATG TACTAGATGA ACATTTCTTA TTGTAAATAT 541 TGTTATAGTT GGTGATCATT GTAAATAACT CATTACTATG CAAAAAGTTC TACCTGAACA 601 AACTTTCTTT CAAAAAAAAA AA Predicted gene structure (within gDNA segment 121015 to 118916): Exon 1 120405 120224 ( 182 n); cDNA 1 183 ( 183 n); score: 0.986 Intron 1 120223 120045 ( 179 n); Pd: 0.984 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 120044 119616 ( 429 n); cDNA 184 612 ( 429 n); score: 1.000 PPA cDNA 613 622 MATCH C08HBa0197A05.1- SGN-E396148- 0.996 611 0.982 C PGS_C08HBa0197A05.1-_SGN-E396148- (120405 120224,120044 119616) Alignment (genomic DNA sequence = upper lines): TTAGCAAAAC TGAGGCTCAG -AAACGCTTA AATGAAGCAA TATCACATAG AATGCACTTA 120347 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTAGCAAAAC TGAGGCTCAG AAAACGCTTA AATGAAGCAA TATCACATAG AATGCACTTA 60 GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG TCCAGAGGTG 120287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG TCCAGAGGTG 120 CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG TCTTAAATCT 120227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG TCTTAAATCT 180 TATGTAAGTA CACCAATCCC ATTTTCATCA AAATCTTTTG AATTTTCTGG TGGGTAGGAA 120167 ||| TAT....... .......... .......... .......... .......... .......... 183 AAAAGTTTAT TCTCGTATAA GCTTGTATGG GGTATTAGGC ACAGAACATT GGTATTGGAT 120107 .......... .......... .......... .......... .......... .......... 183 CTATTGTTAG TTTGAATGAT TTCATGGCAT TTATATTCAT CGGCAATTCC TGTGTTGTAC 120047 .......... .......... .......... .......... .......... .......... 183 AGGTAAGAAC ATTTGAAACA CATTGTGGAT CGTTATCTCA GTATGGAATG AAACATATGC 119987 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTAAGAAC ATTTGAAACA CATTGTGGAT CGTTATCTCA GTATGGAATG AAACATATGC 241 GCTCTGTTGC TAACATATGC AACGCTGGAA TTAAAATGGA GCAGATGGTG GAGGCATCGG 119927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTGTTGC TAACATATGC AACGCTGGAA TTAAAATGGA GCAGATGGTG GAGGCATCGG 301 CACAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC CCTCCACAGG GGTTTTAGTG 119867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC CCTCCACAGG GGTTTTAGTG 361 CATGATTGGC ATGTAATGCG AAATATGCAC GCCTAGATGC TACCAAAATT ATCCGTAATT 119807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATTGGC ATGTAATGCG AAATATGCAC GCCTAGATGC TACCAAAATT ATCCGTAATT 421 ATCAGTATGA AGATTGATAT GGTTGTTTGC TAGTGTAATT GCTTCCTTGT AAATACAGTT 119747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGTATGA AGATTGATAT GGTTGTTTGC TAGTGTAATT GCTTCCTTGT AAATACAGTT 481 TAGAAGCACA TCAATATTGA GTGGAAATGT ACTAGATGAA CATTTCTTAT TGTAAATATT 119687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGCACA TCAATATTGA GTGGAAATGT ACTAGATGAA CATTTCTTAT TGTAAATATT 541 GTTATAGTTG GTGATCATTG TAAATAACTC ATTACTATGC AAAAAGTTCT ACCTGAACAA 119627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATAGTTG GTGATCATTG TAAATAACTC ATTACTATGC AAAAAGTTCT ACCTGAACAA 601 ACTTTCTTTC A 119616 |||||||||| | ACTTTCTTTC A 612 hqPGS_C08HBa0197A05.1-_SGN-E396148- (120405 120224,120044 119616) ******************************************************************************** EST sequence 32 -strand 587 n (File: SGN-E369712-) 1 TAAAAATGCC CTTAAATAAC AGCATAGCCC TTGTCGGTAA GCTTTTGTTT GGAATTAAAA 61 AAGGTCCAAA GGTGCTGACT AGTGTCCGCC CTGCTGGTCA ACCCCTTGTT GACAATTGGG 121 ACTGTTTTAA ATTTTATGTA AAAACATTTT AAACCCATTG TGGATCGTTA TTTCAGTATG 181 GAATGAAACA TATGCGCTTT GTTGCTAACA TATGCAACCC TGGAATTAAA ATGGAGCAAA 241 TGGTGGAGGC ATCGGCCCAA GCTTGTCCCA GTGTTCCATC CTATACCTGG AGTTCCCCCC 301 CCAGGGGTTT TAGGGCATGA TTGGCATGTA ATGCGAAATA TGCCCGCCTA AATGCTACCA 361 AAATTATCCG TAATTATCAG TATTAAAATT GATATGGTTG TTTGCTAGGG TAATTGCTTC 421 CTTGTAAAAA CAGTTTAAAA GCCCATCAAT ATTGAGTGGA AATGTACTAA ATGAACCTTT 481 TTTATTGTAA ATATTGTTAT AGTTGGTGAT CCTTGTAAAT AACTCCTTTC TTTGCCCAAA 541 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 121105 to 118311): Exon 1 120356 120224 ( 133 n); cDNA 5 137 ( 133 n); score: 0.947 Intron 1 120223 120045 ( 179 n); Pd: 0.984 (s: 0.92), Pa: 0.986 (s: 0.92) Exon 2 120044 119642 ( 403 n); cDNA 138 540 ( 403 n); score: 0.931 PPA cDNA 541 587 MATCH C08HBa0197A05.1- SGN-E369712- 0.935 536 0.913 C PGS_C08HBa0197A05.1-_SGN-E369712- (120356 120224,120044 119642) Alignment (genomic DNA sequence = upper lines): AATGCACTTA GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG 120297 ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCCCTTA AATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG 64 TCCAGAGGTG CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG 120237 |||| ||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| TCCAAAGGTG CTGACTAGTG TCCGCCCTGC TGGTCAACCC CTTGTTGACA ATTGGGACTG 124 TCTTAAATCT TATGTAAGTA CACCAATCCC ATTTTCATCA AAATCTTTTG AATTTTCTGG 120177 | |||||| | ||| TTTTAAATTT TAT....... .......... .......... .......... .......... 137 TGGGTAGGAA AAAAGTTTAT TCTCGTATAA GCTTGTATGG GGTATTAGGC ACAGAACATT 120117 .......... .......... .......... .......... .......... .......... 137 GGTATTGGAT CTATTGTTAG TTTGAATGAT TTCATGGCAT TTATATTCAT CGGCAATTCC 120057 .......... .......... .......... .......... .......... .......... 137 TGTGTTGTAC AGGTAAGAAC ATTTGAAACA CATTGTGGAT CGTTATCTCA GTATGGAATG 119997 |||| ||| |||| |||| |||||||||| |||||| ||| |||||||||| .......... ..GTAAAAAC ATTTTAAACC CATTGTGGAT CGTTATTTCA GTATGGAATG 185 AAACATATGC GCTCTGTTGC TAACATATGC AACGCTGGAA TTAAAATGGA GCAGATGGTG 119937 |||||||||| ||| |||||| |||||||||| ||| |||||| |||||||||| ||| |||||| AAACATATGC GCTTTGTTGC TAACATATGC AACCCTGGAA TTAAAATGGA GCAAATGGTG 245 GAGGCATCGG CACAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC CCTCCACAGG 119877 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| || || |||| GAGGCATCGG CCCAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC CCCCCCCAGG 305 GGTTTTAGTG CATGATTGGC ATGTAATGCG AAATATGCAC GCCTAGATGC TACCAAAATT 119817 |||||||| | |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| GGTTTTAGGG CATGATTGGC ATGTAATGCG AAATATGCCC GCCTAAATGC TACCAAAATT 365 ATCCGTAATT ATCAGTATGA AGATTGATAT GGTTGTTTGC TAGTGTAATT GCTTCCTTGT 119757 |||||||||| |||||||| | | |||||||| |||||||||| ||| |||||| |||||||||| ATCCGTAATT ATCAGTATTA AAATTGATAT GGTTGTTTGC TAGGGTAATT GCTTCCTTGT 425 AAATACAGTT TAGAAGCACA TCAATATTGA GTGGAAATGT ACTAGATGAA CATTTCTTAT 119697 ||| |||||| || |||| || |||||||||| |||||||||| |||| ||||| | ||| |||| AAAAACAGTT TAAAAGCCCA TCAATATTGA GTGGAAATGT ACTAAATGAA CCTTTTTTAT 485 TGTAAATATT GTTATAGTTG GTGATCATTG TAAATAACTC ATTACTATGC AAAAA 119642 |||||||||| |||||||||| |||||| ||| |||||||||| || || ||| ||| TGTAAATATT GTTATAGTTG GTGATCCTTG TAAATAACTC CTTTCTTTGC CCAAA 540 hqPGS_C08HBa0197A05.1-_SGN-E369712- (120356 120224,120044 119642) ******************************************************************************** EST sequence 41 +strand 443 n (File: SGN-E239794+) 1 TGTTAGCAAA ACTGAGGCTC AGAAACGCTT AAATGAAGCA ATATCACATA GAATGCACTT 61 AGATAACAGC ATAGCCCTTG TCGGTAAGCT TTTGTTTGGA ATTAAAAAAG GTCCAGAGGT 121 GCTGACTAGT GTCCGCCCTG CTGGTCAGCC GCTTGTTGAC AATTGGGACT GTCTTAAATC 181 TTATGTAAGA ACATTTGAAA CACATTGTGG ATCGTTATCT CAGTATGGAA TGAAACATAT 241 GCGCTCTGTT GCTAACATAT GCAACGCTGG AATTAAAATG GAGCAGATGG TGGAGGCATC 301 GGCACAAGCT TGTCCCAGTG TTCCATCCTA TACCTGGAGT TCCCTCCACA GGGGTTTTAG 361 TGCATGATTG GCATGTAATG CGAAATATGC ACGCCTAGAT GCTACCAAAA TTATCCGTAA 421 TTATCAGTAT GAAGATTGAT ATG Predicted gene structure (within gDNA segment 121007 to 119176): Exon 1 120407 120224 ( 184 n); cDNA 1 184 ( 184 n); score: 1.000 Intron 1 120223 120045 ( 179 n); Pd: 0.984 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 120044 119786 ( 259 n); cDNA 185 443 ( 259 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E239794+ 1.000 443 1.000 C PGS_C08HBa0197A05.1-_SGN-E239794+ (120407 120224,120044 119786) Alignment (genomic DNA sequence = upper lines): TGTTAGCAAA ACTGAGGCTC AGAAACGCTT AAATGAAGCA ATATCACATA GAATGCACTT 120348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAGCAAA ACTGAGGCTC AGAAACGCTT AAATGAAGCA ATATCACATA GAATGCACTT 60 AGATAACAGC ATAGCCCTTG TCGGTAAGCT TTTGTTTGGA ATTAAAAAAG GTCCAGAGGT 120288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAACAGC ATAGCCCTTG TCGGTAAGCT TTTGTTTGGA ATTAAAAAAG GTCCAGAGGT 120 GCTGACTAGT GTCCGCCCTG CTGGTCAGCC GCTTGTTGAC AATTGGGACT GTCTTAAATC 120228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGACTAGT GTCCGCCCTG CTGGTCAGCC GCTTGTTGAC AATTGGGACT GTCTTAAATC 180 TTATGTAAGT ACACCAATCC CATTTTCATC AAAATCTTTT GAATTTTCTG GTGGGTAGGA 120168 |||| TTAT...... .......... .......... .......... .......... .......... 184 AAAAAGTTTA TTCTCGTATA AGCTTGTATG GGGTATTAGG CACAGAACAT TGGTATTGGA 120108 .......... .......... .......... .......... .......... .......... 184 TCTATTGTTA GTTTGAATGA TTTCATGGCA TTTATATTCA TCGGCAATTC CTGTGTTGTA 120048 .......... .......... .......... .......... .......... .......... 184 CAGGTAAGAA CATTTGAAAC ACATTGTGGA TCGTTATCTC AGTATGGAAT GAAACATATG 119988 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTAAGAA CATTTGAAAC ACATTGTGGA TCGTTATCTC AGTATGGAAT GAAACATATG 241 CGCTCTGTTG CTAACATATG CAACGCTGGA ATTAAAATGG AGCAGATGGT GGAGGCATCG 119928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCTGTTG CTAACATATG CAACGCTGGA ATTAAAATGG AGCAGATGGT GGAGGCATCG 301 GCACAAGCTT GTCCCAGTGT TCCATCCTAT ACCTGGAGTT CCCTCCACAG GGGTTTTAGT 119868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAAGCTT GTCCCAGTGT TCCATCCTAT ACCTGGAGTT CCCTCCACAG GGGTTTTAGT 361 GCATGATTGG CATGTAATGC GAAATATGCA CGCCTAGATG CTACCAAAAT TATCCGTAAT 119808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGATTGG CATGTAATGC GAAATATGCA CGCCTAGATG CTACCAAAAT TATCCGTAAT 421 TATCAGTATG AAGATTGATA TG 119786 |||||||||| |||||||||| || TATCAGTATG AAGATTGATA TG 443 hqPGS_C08HBa0197A05.1-_SGN-E239794+ (120407 120224,120044 119786) ******************************************************************************** EST sequence 78 +strand 603 n (File: SGN-E244444+) 1 TCGTGCCGGT TTGAAGCAGC AATATCACCT GGTCAAAGAG AGAACTGCCA GTGGGAATCC 61 TGCCTATGGT TCGCATGTCA TGCAATATGG TGATGTACAT CTCAGCAAGG ATGCTGTATT 121 CCTATATATG GGTACCGATC CTGCAAATGA TAATTCTACT TTTATGGATG ACAATTCCTT 181 GCGAGTATCA AAGGCTGTAA ACCAGCGTGA TGCAGATCTT GTGCATTTCT GGTACAAGTT 241 CCACAAGGCT CCTGAAGGCT CTGTTAGCAA AACTGAGGCT CAGAAACGCT TAAATGAAGC 301 AATATCACAT AGAATGCACT TAGATAACAG CATAGCCCTT GTCGGTAAGC TTTTGTTTGG 361 AATTAAAAAA GGTCCAGAGG TGCTGACTAG TGTCCGCCCT GCTGGTCAGC CGCTTGTTGA 421 CAATTGGGAC TGTCTTAAAT CTTATGTAAG AACATTTGAA ACACATTGTG GATCGTTATC 481 TCAGTATGGA ATGAAACATA TGCGCTCTGT TGCTAACATA TGCAACGCTG GAATTAAAAT 541 GGAGCACATG GTGGAGGCAT CGGCACAAGC TTGTCCCAGT GTTCCATCCT ATACCTGGAG 601 TTC Predicted gene structure (within gDNA segment 121841 to 119277): Exon 1 121256 121229 ( 28 n); cDNA 4 31 ( 28 n); score: 0.893 Intron 1 121228 120941 ( 288 n); Pd: 0.928 (s: 0), Pa: 0.853 (s: 1.00) Exon 2 120940 120734 ( 207 n); cDNA 32 238 ( 207 n); score: 1.000 Intron 2 120733 120431 ( 303 n); Pd: 0.998 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 120430 120224 ( 207 n); cDNA 239 445 ( 207 n); score: 1.000 Intron 3 120223 120045 ( 179 n); Pd: 0.984 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 120044 119887 ( 158 n); cDNA 446 603 ( 158 n); score: 0.994 MATCH C08HBa0197A05.1- SGN-E244444+ 0.998 600 0.995 C PGS_C08HBa0197A05.1-_SGN-E244444+ (121256 121229,120940 120734,120430 120224,120044 119887) Alignment (genomic DNA sequence = upper lines): TGAAAGTTTG AAGCAGCAAT ATCACCTGGT AAGAGCTTAT GGACATGAAG AATTGGGATA 121197 || ||||| |||||||||| |||||||| TGCCGGTTTG AAGCAGCAAT ATCACCTG.. .......... .......... .......... 31 ATCTATAATA GAATTGATGA CTCGTTAGAA AAGTAAAATG TAATAGTAAT AAAAAGAACT 121137 .......... .......... .......... .......... .......... .......... 31 TAGAAAGCGA CGCCAATATC TTTCAGTTGT GCATAGTGGG AGAAGGGGTA AAGGGAGGAA 121077 .......... .......... .......... .......... .......... .......... 31 GTAAAAATGC CATTTTATAT TTATGTAGCT ATTACTGCAA ATAGTCGATG TGCATTATTT 121017 .......... .......... .......... .......... .......... .......... 31 CTGCAATGCA CTTCTTTTTT ATGATGCCGT TTGAGAATTG TGTACAAGGC ATCAGCTCTA 120957 .......... .......... .......... .......... .......... .......... 31 ATTCCTGGTT ATGCAGGTCA AAGAGAGAAC TGCCAGTGGG AATCCTGCCT ATGGTTCGCA 120897 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTCA AAGAGAGAAC TGCCAGTGGG AATCCTGCCT ATGGTTCGCA 75 TGTCATGCAA TATGGTGATG TACATCTCAG CAAGGATGCT GTATTCCTAT ATATGGGTAC 120837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCATGCAA TATGGTGATG TACATCTCAG CAAGGATGCT GTATTCCTAT ATATGGGTAC 135 CGATCCTGCA AATGATAATT CTACTTTTAT GGATGACAAT TCCTTGCGAG TATCAAAGGC 120777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCCTGCA AATGATAATT CTACTTTTAT GGATGACAAT TCCTTGCGAG TATCAAAGGC 195 TGTAAACCAG CGTGATGCAG ATCTTGTGCA TTTCTGGTAC AAGGTATGCT CCAAGTTTAT 120717 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGTAAACCAG CGTGATGCAG ATCTTGTGCA TTTCTGGTAC AAG....... .......... 238 ATGTGTTTTT ATGATACAAG TTAGTATCCA AGGATGAAAG AAGTAGTTTA CCTAAACATA 120657 .......... .......... .......... .......... .......... .......... 238 TGAAACGGCA GGAAATAAAA GTTTTGATTT ATGAAGCACA TTTGGGATAC AAGTTAGTAA 120597 .......... .......... .......... .......... .......... .......... 238 GTATCCCAAG GACGAAAGAA GTAATATACG TTTGCACCAT TAGGTGCCAA TGAGTAATTT 120537 .......... .......... .......... .......... .......... .......... 238 AGTTGATACC TGAATTTGAG GGATGTGTAT TGAGTGATAT TTTGTATCTG ATGTTCTTCA 120477 .......... .......... .......... .......... .......... .......... 238 CCATGTGATA TCTTCTGATT TATGTTCTGT TTGTCTAAAC TGGCAGTTCC ACAAGGCTCC 120417 |||| |||||||||| .......... .......... .......... .......... ......TTCC ACAAGGCTCC 252 TGAAGGCTCT GTTAGCAAAA CTGAGGCTCA GAAACGCTTA AATGAAGCAA TATCACATAG 120357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGCTCT GTTAGCAAAA CTGAGGCTCA GAAACGCTTA AATGAAGCAA TATCACATAG 312 AATGCACTTA GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG 120297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCACTTA GATAACAGCA TAGCCCTTGT CGGTAAGCTT TTGTTTGGAA TTAAAAAAGG 372 TCCAGAGGTG CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG 120237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGAGGTG CTGACTAGTG TCCGCCCTGC TGGTCAGCCG CTTGTTGACA ATTGGGACTG 432 TCTTAAATCT TATGTAAGTA CACCAATCCC ATTTTCATCA AAATCTTTTG AATTTTCTGG 120177 |||||||||| ||| TCTTAAATCT TAT....... .......... .......... .......... .......... 445 TGGGTAGGAA AAAAGTTTAT TCTCGTATAA GCTTGTATGG GGTATTAGGC ACAGAACATT 120117 .......... .......... .......... .......... .......... .......... 445 GGTATTGGAT CTATTGTTAG TTTGAATGAT TTCATGGCAT TTATATTCAT CGGCAATTCC 120057 .......... .......... .......... .......... .......... .......... 445 TGTGTTGTAC AGGTAAGAAC ATTTGAAACA CATTGTGGAT CGTTATCTCA GTATGGAATG 119997 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTAAGAAC ATTTGAAACA CATTGTGGAT CGTTATCTCA GTATGGAATG 493 AAACATATGC GCTCTGTTGC TAACATATGC AACGCTGGAA TTAAAATGGA GCAGATGGTG 119937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AAACATATGC GCTCTGTTGC TAACATATGC AACGCTGGAA TTAAAATGGA GCACATGGTG 553 GAGGCATCGG CACAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC 119887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATCGG CACAAGCTTG TCCCAGTGTT CCATCCTATA CCTGGAGTTC 603 hqPGS_C08HBa0197A05.1-_SGN-E244444+ (121256 121229,120940 120734,120430 120224,120044 119887) ******************************************************************************** EST sequence 28 -strand 177 n (File: SGN-E299631-) 1 GCTTGTCCCA GTGTTCCATC CTATACCTGG AGTTCCCTCC ACAGGGGTTT TAGTGCATGA 61 TTGGCATGTA ATGCGAAATA TGCACGCCTA GATGCTACCA AAATTATCCG TAATTATCAG 121 TATGAAGATT GATATGGTTG TTTGCTAGTG TAATTGCTTC CTTGTAAATA CAGTTTA Predicted gene structure (within gDNA segment 120531 to 119145): Exon 1 119921 119745 ( 177 n); cDNA 1 177 ( 177 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E299631- 1.000 177 1.000 C PGS_C08HBa0197A05.1-_SGN-E299631- (119921 119745) Alignment (genomic DNA sequence = upper lines): GCTTGTCCCA GTGTTCCATC CTATACCTGG AGTTCCCTCC ACAGGGGTTT TAGTGCATGA 119862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTCCCA GTGTTCCATC CTATACCTGG AGTTCCCTCC ACAGGGGTTT TAGTGCATGA 60 TTGGCATGTA ATGCGAAATA TGCACGCCTA GATGCTACCA AAATTATCCG TAATTATCAG 119802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCATGTA ATGCGAAATA TGCACGCCTA GATGCTACCA AAATTATCCG TAATTATCAG 120 TATGAAGATT GATATGGTTG TTTGCTAGTG TAATTGCTTC CTTGTAAATA CAGTTTA 119745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATGAAGATT GATATGGTTG TTTGCTAGTG TAATTGCTTC CTTGTAAATA CAGTTTA 177 hqPGS_C08HBa0197A05.1-_SGN-E299631- (119921 119745) ******************************************************************************** EST sequence 83 +strand 612 n (File: SGN-E390162+) 1 CTTTTATAGT GATCATGGAG GTGCTGGAGT GCTTGGAATG CCTACCAATC CTTACCTCTA 61 TGCAAATGAT CTGATTGATG CTCTGAAAAT GAAGCATGCT TCGGGAACAT ACAAAAGCTT 121 GGTATTTTAC CTTGAAGCTT GTGAGTCTGG AAGTATGTTT GAGGGTCTTC TTCCTGAAGG 181 TTTAAACATC TATGCCACAA CAGCATCAAA TGCTGATGAG AGCAGCTGGG GAACCTATTG 241 CCCAGGGGAG TACCCTAGTC CTCCTATCGA ATATGACACC TGCCTGGGTG ACTTGTATAG 301 TATTTCCTGG ATGGAGGACA GTGAAAGACA CAACCTGCGG ACTGAAAGTT TGAAGCAGCA 361 ATATCACCTG GTCAAAGAGA GAACTGCCAG TGGGAATCCT GCCTATGGTT CGCATGTCAT 421 GCAATATGGT GATGTACATC TCAGCAAGGA TGCTGTATTC CTATATATGG GTACCGATCC 481 TGCAAATGAT AATTCTACTT TTATGGATGA CAATTCCTTG CGAGTATCAA AGGCTGTAAA 541 CCAGCGTGAT GCAGATCTTG TGCATTTCTG GTACAAGTTC CACAAGGCTC CTGAAAGCTC 601 TGTTAGCAAA AC Predicted gene structure (within gDNA segment 123632 to 119786): Exon 1 123032 122998 ( 35 n); cDNA 1 35 ( 35 n); score: 1.000 Intron 1 122997 122216 ( 782 n); Pd: 0.992 (s: 0), Pa: 0.888 (s: 1.00) Exon 2 122215 122130 ( 86 n); cDNA 36 121 ( 86 n); score: 1.000 Intron 2 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 122031 121832 ( 200 n); cDNA 122 321 ( 200 n); score: 1.000 Intron 3 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 121277 121229 ( 49 n); cDNA 322 370 ( 49 n); score: 1.000 Intron 4 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 5 120940 120734 ( 207 n); cDNA 371 577 ( 207 n); score: 1.000 Intron 5 120733 120431 ( 303 n); Pd: 0.998 (s: 1.00), Pa: 0.997 (s: 0) Exon 6 120430 120396 ( 35 n); cDNA 578 612 ( 35 n); score: 0.971 MATCH C08HBa0197A05.1- SGN-E390162+ 1.000 612 1.000 C PGS_C08HBa0197A05.1-_SGN-E390162+ (123032 122998,122215 122130,122031 121832,121277 121229,120940 120734,120430 120396) Alignment (genomic DNA sequence = upper lines): CTTTTATAGT GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC 122973 |||||||||| |||||||||| |||||||||| ||||| CTTTTATAGT GATCATGGAG GTGCTGGAGT GCTTG..... .......... .......... 35 CTTTTCTGTT CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA 122913 .......... .......... .......... .......... .......... .......... 35 AAATGATGTT TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC 122853 .......... .......... .......... .......... .......... .......... 35 TAACTGTTAT CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT 122793 .......... .......... .......... .......... .......... .......... 35 GGGAAAATCC TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG 122733 .......... .......... .......... .......... .......... .......... 35 CAATTAGTAG TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT 122673 .......... .......... .......... .......... .......... .......... 35 CTACAAGCAT ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC 122613 .......... .......... .......... .......... .......... .......... 35 CAAGGTTAAT ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA 122553 .......... .......... .......... .......... .......... .......... 35 GGCTGCTATA CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA 122493 .......... .......... .......... .......... .......... .......... 35 TGGTTTTATT ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT 122433 .......... .......... .......... .......... .......... .......... 35 CACTGTTGTA TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG 122373 .......... .......... .......... .......... .......... .......... 35 GATGAATATA ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT 122313 .......... .......... .......... .......... .......... .......... 35 CAATTATATT TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT 122253 .......... .......... .......... .......... .......... .......... 35 TCACTTCATA TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC 122193 ||| |||||||||| |||||||||| .......... .......... .......... .......GAA TGCCTACCAA TCCTTACCTC 58 TATGCAAATG ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC 122133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCAAATG ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC 118 TTGGTGAGCT GAGCTTTAAT ATTTCCTGCA GACTTGTGCT GCTATAGGTT GTTTGAGTCC 122073 ||| TTG....... .......... .......... .......... .......... .......... 121 CTTTTCCATT CTATGAGTTA TTTATTGTTC TCTATTTACA GGTATTTTAC CTTGAAGCTT 122013 ||||||||| |||||||||| .......... .......... .......... .......... .GTATTTTAC CTTGAAGCTT 140 GTGAGTCTGG AAGTATGTTT GAGGGTCTTC TTCCTGAAGG TTTAAACATC TATGCCACAA 121953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGTCTGG AAGTATGTTT GAGGGTCTTC TTCCTGAAGG TTTAAACATC TATGCCACAA 200 CAGCATCAAA TGCTGATGAG AGCAGCTGGG GAACCTATTG CCCAGGGGAG TACCCTAGTC 121893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCATCAAA TGCTGATGAG AGCAGCTGGG GAACCTATTG CCCAGGGGAG TACCCTAGTC 260 CTCCTATCGA ATATGACACC TGCCTGGGTG ACTTGTATAG TATTTCCTGG ATGGAGGACA 121833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTATCGA ATATGACACC TGCCTGGGTG ACTTGTATAG TATTTCCTGG ATGGAGGACA 320 GGTACATGCG GTTTTTCTGC GTTATATAAA TTCCATGTGA AAAACTGTAG GAAATATGAG 121773 | G......... .......... .......... .......... .......... .......... 321 TTCACGATGA ATTTTGACTA TGATGTTTGT CTAATGTGTT GGCTTCTTGG TTGTCTATGT 121713 .......... .......... .......... .......... .......... .......... 321 TTGGAATCAT AAGTTTGCCA GTCTTATAAA TATCATGGCA ATCGAAATTA AAGATATTCT 121653 .......... .......... .......... .......... .......... .......... 321 CAATGTTTAA ACAACGTCTG TATCAGCAGA CAACTATGAA AAACATTAGT TTATTGAGTC 121593 .......... .......... .......... .......... .......... .......... 321 CTATAAGTAT TTTTTGCCAT AGAAATTGAA TACATTCTGT GATTCTACAC CAGAGATCAT 121533 .......... .......... .......... .......... .......... .......... 321 ATAACTCACA AGTTAATACT TGAGAGTTTG TGAGTTGCCA ATGCGAGCTT GGGCTTGTTA 121473 .......... .......... .......... .......... .......... .......... 321 TATGAGGATT TCCTTCCATT TGTTATTCCT TTACGTTCAA CTTTTTTCAT AATGCAATTA 121413 .......... .......... .......... .......... .......... .......... 321 TTAAATATGC CACTTAGCTA CCTTTACCAG TTGAGATTCA GGCATAGTTA TCATTACTGT 121353 .......... .......... .......... .......... .......... .......... 321 AAATCTGCTT GTGAAATTAT TTAATGGATT TCAACAGCTT AATTTTTGTT GACTCTGTTA 121293 .......... .......... .......... .......... .......... .......... 321 TTTGTATCTG AGCAGTGAAA GACACAACCT GCGGACTGAA AGTTTGAAGC AGCAATATCA 121233 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TGAAA GACACAACCT GCGGACTGAA AGTTTGAAGC AGCAATATCA 366 CCTGGTAAGA GCTTATGGAC ATGAAGAATT GGGATAATCT ATAATAGAAT TGATGACTCG 121173 |||| CCTG...... .......... .......... .......... .......... .......... 370 TTAGAAAAGT AAAATGTAAT AGTAATAAAA AGAACTTAGA AAGCGACGCC AATATCTTTC 121113 .......... .......... .......... .......... .......... .......... 370 AGTTGTGCAT AGTGGGAGAA GGGGTAAAGG GAGGAAGTAA AAATGCCATT TTATATTTAT 121053 .......... .......... .......... .......... .......... .......... 370 GTAGCTATTA CTGCAAATAG TCGATGTGCA TTATTTCTGC AATGCACTTC TTTTTTATGA 120993 .......... .......... .......... .......... .......... .......... 370 TGCCGTTTGA GAATTGTGTA CAAGGCATCA GCTCTAATTC CTGGTTATGC AGGTCAAAGA 120933 |||||||| .......... .......... .......... .......... .......... ..GTCAAAGA 378 GAGAACTGCC AGTGGGAATC CTGCCTATGG TTCGCATGTC ATGCAATATG GTGATGTACA 120873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTGCC AGTGGGAATC CTGCCTATGG TTCGCATGTC ATGCAATATG GTGATGTACA 438 TCTCAGCAAG GATGCTGTAT TCCTATATAT GGGTACCGAT CCTGCAAATG ATAATTCTAC 120813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAGCAAG GATGCTGTAT TCCTATATAT GGGTACCGAT CCTGCAAATG ATAATTCTAC 498 TTTTATGGAT GACAATTCCT TGCGAGTATC AAAGGCTGTA AACCAGCGTG ATGCAGATCT 120753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATGGAT GACAATTCCT TGCGAGTATC AAAGGCTGTA AACCAGCGTG ATGCAGATCT 558 TGTGCATTTC TGGTACAAGG TATGCTCCAA GTTTATATGT GTTTTTATGA TACAAGTTAG 120693 |||||||||| ||||||||| TGTGCATTTC TGGTACAAG. .......... .......... .......... .......... 577 TATCCAAGGA TGAAAGAAGT AGTTTACCTA AACATATGAA ACGGCAGGAA ATAAAAGTTT 120633 .......... .......... .......... .......... .......... .......... 577 TGATTTATGA AGCACATTTG GGATACAAGT TAGTAAGTAT CCCAAGGACG AAAGAAGTAA 120573 .......... .......... .......... .......... .......... .......... 577 TATACGTTTG CACCATTAGG TGCCAATGAG TAATTTAGTT GATACCTGAA TTTGAGGGAT 120513 .......... .......... .......... .......... .......... .......... 577 GTGTATTGAG TGATATTTTG TATCTGATGT TCTTCACCAT GTGATATCTT CTGATTTATG 120453 .......... .......... .......... .......... .......... .......... 577 TTCTGTTTGT CTAAACTGGC AGTTCCACAA GGCTCCTGAA GGCTCTGTTA GCAAAAC 120396 |||||||| |||||||||| ||||||||| ||||||| .......... .......... ..TTCCACAA GGCTCCTGAA AGCTCTGTTA GCAAAAC 612 hqPGS_C08HBa0197A05.1-_SGN-E390162+ (123032 122998,122215 122130,122031 121832,121277 121229,120940 120734,120430 120396) ******************************************************************************** EST sequence 73 +strand 339 n (File: SGN-E275360+) 1 TTAAACATCT ATGCCACAAC AGCATCAAAT GCTGATGAGA GCAGCTGGGG AACCTATTGC 61 CCAGGGGAGT ACCCTAGTCC TCCTATCGAA TATGACACCT GCCTGGGTGA CTTGTATAGT 121 ATTTCCTGGA TGGAGGACAG TGAAAGACAC AACCTGCGGA CTGAAAGTTT GAAGCAGCAA 181 TATCACCTGG TCAAAGAGAG AACTGCCAGT GGGAATCCTG CCTATGGTTC GCATGTCATG 241 CAATATGGTG ATGTACATCT CAGCAGGGAT GCTGTATTCC TATATATGGG GACCGGAGCC 301 TGCAAATGAT AATTCTACTT TTATGGGATG ACAATTCCT Predicted gene structure (within gDNA segment 122571 to 120065): Exon 1 121971 121832 ( 140 n); cDNA 1 140 ( 140 n); score: 1.000 Intron 1 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 121277 121229 ( 49 n); cDNA 141 189 ( 49 n); score: 1.000 Intron 2 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 3 120940 120793 ( 148 n); cDNA 190 339 ( 150 n); score: 0.946 MATCH C08HBa0197A05.1- SGN-E275360+ 0.972 337 0.994 C PGS_C08HBa0197A05.1-_SGN-E275360+ (121971 121832,121277 121229,120940 120793) Alignment (genomic DNA sequence = upper lines): TTAAACATCT ATGCCACAAC AGCATCAAAT GCTGATGAGA GCAGCTGGGG AACCTATTGC 121912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAACATCT ATGCCACAAC AGCATCAAAT GCTGATGAGA GCAGCTGGGG AACCTATTGC 60 CCAGGGGAGT ACCCTAGTCC TCCTATCGAA TATGACACCT GCCTGGGTGA CTTGTATAGT 121852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGGGAGT ACCCTAGTCC TCCTATCGAA TATGACACCT GCCTGGGTGA CTTGTATAGT 120 ATTTCCTGGA TGGAGGACAG GTACATGCGG TTTTTCTGCG TTATATAAAT TCCATGTGAA 121792 |||||||||| |||||||||| ATTTCCTGGA TGGAGGACAG .......... .......... .......... .......... 140 AAACTGTAGG AAATATGAGT TCACGATGAA TTTTGACTAT GATGTTTGTC TAATGTGTTG 121732 .......... .......... .......... .......... .......... .......... 140 GCTTCTTGGT TGTCTATGTT TGGAATCATA AGTTTGCCAG TCTTATAAAT ATCATGGCAA 121672 .......... .......... .......... .......... .......... .......... 140 TCGAAATTAA AGATATTCTC AATGTTTAAA CAACGTCTGT ATCAGCAGAC AACTATGAAA 121612 .......... .......... .......... .......... .......... .......... 140 AACATTAGTT TATTGAGTCC TATAAGTATT TTTTGCCATA GAAATTGAAT ACATTCTGTG 121552 .......... .......... .......... .......... .......... .......... 140 ATTCTACACC AGAGATCATA TAACTCACAA GTTAATACTT GAGAGTTTGT GAGTTGCCAA 121492 .......... .......... .......... .......... .......... .......... 140 TGCGAGCTTG GGCTTGTTAT ATGAGGATTT CCTTCCATTT GTTATTCCTT TACGTTCAAC 121432 .......... .......... .......... .......... .......... .......... 140 TTTTTTCATA ATGCAATTAT TAAATATGCC ACTTAGCTAC CTTTACCAGT TGAGATTCAG 121372 .......... .......... .......... .......... .......... .......... 140 GCATAGTTAT CATTACTGTA AATCTGCTTG TGAAATTATT TAATGGATTT CAACAGCTTA 121312 .......... .......... .......... .......... .......... .......... 140 ATTTTTGTTG ACTCTGTTAT TTGTATCTGA GCAGTGAAAG ACACAACCTG CGGACTGAAA 121252 |||||| |||||||||| |||||||||| .......... .......... .......... ....TGAAAG ACACAACCTG CGGACTGAAA 166 GTTTGAAGCA GCAATATCAC CTGGTAAGAG CTTATGGACA TGAAGAATTG GGATAATCTA 121192 |||||||||| |||||||||| ||| GTTTGAAGCA GCAATATCAC CTG....... .......... .......... .......... 189 TAATAGAATT GATGACTCGT TAGAAAAGTA AAATGTAATA GTAATAAAAA GAACTTAGAA 121132 .......... .......... .......... .......... .......... .......... 189 AGCGACGCCA ATATCTTTCA GTTGTGCATA GTGGGAGAAG GGGTAAAGGG AGGAAGTAAA 121072 .......... .......... .......... .......... .......... .......... 189 AATGCCATTT TATATTTATG TAGCTATTAC TGCAAATAGT CGATGTGCAT TATTTCTGCA 121012 .......... .......... .......... .......... .......... .......... 189 ATGCACTTCT TTTTTATGAT GCCGTTTGAG AATTGTGTAC AAGGCATCAG CTCTAATTCC 120952 .......... .......... .......... .......... .......... .......... 189 TGGTTATGCA GGTCAAAGAG AGAACTGCCA GTGGGAATCC TGCCTATGGT TCGCATGTCA 120892 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTCAAAGAG AGAACTGCCA GTGGGAATCC TGCCTATGGT TCGCATGTCA 238 TGCAATATGG TGATGTACAT CTCAGCAAGG ATGCTGTATT CCTATATATG GGTACC-GAT 120833 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| || ||| || TGCAATATGG TGATGTACAT CTCAGCAGGG ATGCTGTATT CCTATATATG GGGACCGGAG 298 CCTGCAAATG ATAATTCTAC TTTTAT-GGA TGACAATTCC T 120793 |||||||||| |||||||||| |||||| ||| |||||||||| | CCTGCAAATG ATAATTCTAC TTTTATGGGA TGACAATTCC T 339 hqPGS_C08HBa0197A05.1-_SGN-E275360+ (121971 121832,121277 121229,120940 120793) ******************************************************************************** EST sequence 92 +strand 652 n (File: SGN-E248815+) 1 TTACAACGGA GTACCTAAAG ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 61 TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 121 TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTGGAAT 181 GCCTACCAAT CCTTACCTCT ATGCAAATGA TCTGATTGAT GCTCTGAAAA TGAAGCATGC 241 TTCGGGAACA TACAAAAGCT TGGTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT 301 TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA 361 GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC 421 CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AGTGAAAGAC ACAACCTGCG 481 GACTGAAAGT TTGAAGCAGC AATATCACCT GGTCAAAGAG AGAACTGCCA GTGGGAATCC 541 TGCCTATGGT TCGCATGTCA TGCAATATGG TGATGTACAT CTCANCAAGG ATGCTGTATT 601 CCTATATATG GGTACCGATC CTGCAAATGA TAATTCTACT TTTATGGATG AC Predicted gene structure (within gDNA segment 123944 to 120190): Exon 1 123323 123305 ( 19 n); cDNA 1 19 ( 19 n); score: 0.947 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 123154 122998 ( 157 n); cDNA 20 176 ( 157 n); score: 1.000 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 177 262 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121832 ( 200 n); cDNA 263 462 ( 200 n); score: 1.000 Intron 4 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 121277 121229 ( 49 n); cDNA 463 511 ( 49 n); score: 1.000 Intron 5 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 6 120940 120800 ( 141 n); cDNA 512 652 ( 141 n); score: 0.993 MATCH C08HBa0197A05.1- SGN-E248815+ 0.998 652 1.000 C PGS_C08HBa0197A05.1-_SGN-E248815+ (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120800) Alignment (genomic DNA sequence = upper lines): TTACAACGGA GTACCTAAGG TAAGTTTGTT TCCGTAAATT TTACATTTAC CTAGTAATAA 123264 |||||||||| |||||||| TTACAACGGA GTACCTAAA. .......... .......... .......... .......... 19 GTAAAACTGT TTCTGATATT GTCTCTTGAG GCAGGATTAC ATGGGGGATG ATGTTACTGT 123204 .......... .......... .......... .......... .......... .......... 19 TTTACATTTA CCTAGTAATA ACAGTTTCTG ATATTGTCTC TTGAGGCAGG ATTACACGGG 123144 | |||||||||| .......... .......... .......... .......... .........G ATTACACGGG 30 GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 123084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 90 CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 123024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 150 TGATCATGGA GGTGCTGGAG TGCTTGGTGA GTAGCTTCAT TATACTTGAT CCTTTTCTGT 122964 |||||||||| |||||||||| |||||| TGATCATGGA GGTGCTGGAG TGCTTG.... .......... .......... .......... 176 TCATGTATCC TCTATGCCCA TATTTAGTAA TGATGTTTTT ATAGTGCTAG AAAATGATGT 122904 .......... .......... .......... .......... .......... .......... 176 TTACTGGTTC TTGTTCTTTT AGACAAACAG GACGTAAATT GGTTATGCAT CTAACTGTTA 122844 .......... .......... .......... .......... .......... .......... 176 TCTGTTGAAT ATCAACAGTT CTTCAAAATT CTGTTTGCAC GGAAAAAGTT TGGGAAAATC 122784 .......... .......... .......... .......... .......... .......... 176 CTATTGGTAT TGAAAAAAAG GGCACTCGAC TTACTAATTG TGTCAATAGG GCAATTAGTA 122724 .......... .......... .......... .......... .......... .......... 176 GTTTCTTGAT TTTATCATAG ACATTATTTT TCTAGGATTC ACAATTACTA TCTACAAGCA 122664 .......... .......... .......... .......... .......... .......... 176 TATACCTTCC TCGAGCGGAA CCTATTCATT TTAATTGTTA AACAGTATTC CCAAGGTTAA 122604 .......... .......... .......... .......... .......... .......... 176 TATGCCATCC TAATTAACAA TAACATGTTT GAATTTTTTG ATTATGATAT AGGCTGCTAT 122544 .......... .......... .......... .......... .......... .......... 176 ACTCCACAAG AAATCACTAG CTAAGTTAAT TCAGAATCTG TCTCATTTTA ATGGTTTTAT 122484 .......... .......... .......... .......... .......... .......... 176 TATGTCTCTT ATGAACAATC TTCTCTTTTG ATCTTTCAAG TTTTGAGCAA TCACTGTTGT 122424 .......... .......... .......... .......... .......... .......... 176 ATGTGAAGTT CTATCATTTG TTTGGATCAT GGGTGAGTTG GTTATTCTGG GGATGAATAT 122364 .......... .......... .......... .......... .......... .......... 176 AATGAGACAG GACATGTTTT GTTGGATCAA AGTGTTGAAG GCTTGCTGTG TCAATTATAT 122304 .......... .......... .......... .......... .......... .......... 176 TTTGCATTTG ATGGGCTTTT TAAATTGCAT GAAGAATAAT TTATAGTTCC TTCACTTCAT 122244 .......... .......... .......... .......... .......... .......... 176 ATACTAATAA TAGTGTCATG TCTTCTAGGA ATGCCTACCA ATCCTTACCT CTATGCAAAT 122184 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA ATGCCTACCA ATCCTTACCT CTATGCAAAT 208 GATCTGATTG ATGCTCTGAA AATGAAGCAT GCTTCGGGAA CATACAAAAG CTTGGTGAGC 122124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATCTGATTG ATGCTCTGAA AATGAAGCAT GCTTCGGGAA CATACAAAAG CTTG...... 262 TGAGCTTTAA TATTTCCTGC AGACTTGTGC TGCTATAGGT TGTTTGAGTC CCTTTTCCAT 122064 .......... .......... .......... .......... .......... .......... 262 TCTATGAGTT ATTTATTGTT CTCTATTTAC AGGTATTTTA CCTTGAAGCT TGTGAGTCTG 122004 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTATTTTA CCTTGAAGCT TGTGAGTCTG 290 GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA 121944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA 350 ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG 121884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG 410 AATATGACAC CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AGGTACATGC 121824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AATATGACAC CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AG........ 462 GGTTTTTCTG CGTTATATAA ATTCCATGTG AAAAACTGTA GGAAATATGA GTTCACGATG 121764 .......... .......... .......... .......... .......... .......... 462 AATTTTGACT ATGATGTTTG TCTAATGTGT TGGCTTCTTG GTTGTCTATG TTTGGAATCA 121704 .......... .......... .......... .......... .......... .......... 462 TAAGTTTGCC AGTCTTATAA ATATCATGGC AATCGAAATT AAAGATATTC TCAATGTTTA 121644 .......... .......... .......... .......... .......... .......... 462 AACAACGTCT GTATCAGCAG ACAACTATGA AAAACATTAG TTTATTGAGT CCTATAAGTA 121584 .......... .......... .......... .......... .......... .......... 462 TTTTTTGCCA TAGAAATTGA ATACATTCTG TGATTCTACA CCAGAGATCA TATAACTCAC 121524 .......... .......... .......... .......... .......... .......... 462 AAGTTAATAC TTGAGAGTTT GTGAGTTGCC AATGCGAGCT TGGGCTTGTT ATATGAGGAT 121464 .......... .......... .......... .......... .......... .......... 462 TTCCTTCCAT TTGTTATTCC TTTACGTTCA ACTTTTTTCA TAATGCAATT ATTAAATATG 121404 .......... .......... .......... .......... .......... .......... 462 CCACTTAGCT ACCTTTACCA GTTGAGATTC AGGCATAGTT ATCATTACTG TAAATCTGCT 121344 .......... .......... .......... .......... .......... .......... 462 TGTGAAATTA TTTAATGGAT TTCAACAGCT TAATTTTTGT TGACTCTGTT ATTTGTATCT 121284 .......... .......... .......... .......... .......... .......... 462 GAGCAGTGAA AGACACAACC TGCGGACTGA AAGTTTGAAG CAGCAATATC ACCTGGTAAG 121224 |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ......TGAA AGACACAACC TGCGGACTGA AAGTTTGAAG CAGCAATATC ACCTG..... 511 AGCTTATGGA CATGAAGAAT TGGGATAATC TATAATAGAA TTGATGACTC GTTAGAAAAG 121164 .......... .......... .......... .......... .......... .......... 511 TAAAATGTAA TAGTAATAAA AAGAACTTAG AAAGCGACGC CAATATCTTT CAGTTGTGCA 121104 .......... .......... .......... .......... .......... .......... 511 TAGTGGGAGA AGGGGTAAAG GGAGGAAGTA AAAATGCCAT TTTATATTTA TGTAGCTATT 121044 .......... .......... .......... .......... .......... .......... 511 ACTGCAAATA GTCGATGTGC ATTATTTCTG CAATGCACTT CTTTTTTATG ATGCCGTTTG 120984 .......... .......... .......... .......... .......... .......... 511 AGAATTGTGT ACAAGGCATC AGCTCTAATT CCTGGTTATG CAGGTCAAAG AGAGAACTGC 120924 ||||||| |||||||||| .......... .......... .......... .......... ...GTCAAAG AGAGAACTGC 528 CAGTGGGAAT CCTGCCTATG GTTCGCATGT CATGCAATAT GGTGATGTAC ATCTCAGCAA 120864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CAGTGGGAAT CCTGCCTATG GTTCGCATGT CATGCAATAT GGTGATGTAC ATCTCANCAA 588 GGATGCTGTA TTCCTATATA TGGGTACCGA TCCTGCAAAT GATAATTCTA CTTTTATGGA 120804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCTGTA TTCCTATATA TGGGTACCGA TCCTGCAAAT GATAATTCTA CTTTTATGGA 648 TGAC 120800 |||| TGAC 652 hqPGS_C08HBa0197A05.1-_SGN-E248815+ (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120800) ******************************************************************************** EST sequence 44 +strand 435 n (File: SGN-E294970+) 1 GATGCTCTGA AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTGGTATT TTACCTTGAA 61 GCTTGTGAGT CTGGAAGTAT GTTTGAGGGT CTTCTTCCTG AAGGTTTAAA CATCTATGCC 121 ACAACAGCAT CAAATGCTGA TGAGAGCAGC TGGGGAACCT ATTGCCCAGG GGAGTACCCT 181 AGTCCTCCTA TCGAATATGA CACCTGCCTG GGTGACTTGT ATAGTATTTC CTGGATGGAG 241 GACAGTGAAA GACACAACCT GCGGACTGAA AGTTTGAAGC AGCAATATCA CCTGGTCAAA 301 GAGAGAACTG CCAGTGGGAA TCCTGCCTAT GGTTCGCATG TCATGCAATA TGGTGATGTA 361 CATCTCAGCA AGGATGCTGT ATTCCTATAT ATGGGTACCG ATCCTGCAAA TGATAATTCT 421 ACTTTTATGG ATGAC Predicted gene structure (within gDNA segment 122774 to 120190): Exon 1 122174 122130 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 122031 121832 ( 200 n); cDNA 46 245 ( 200 n); score: 1.000 Intron 2 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 121277 121229 ( 49 n); cDNA 246 294 ( 49 n); score: 1.000 Intron 3 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 4 120940 120800 ( 141 n); cDNA 295 435 ( 141 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E294970+ 1.000 435 1.000 C PGS_C08HBa0197A05.1-_SGN-E294970+ (122174 122130,122031 121832,121277 121229,120940 120800) Alignment (genomic DNA sequence = upper lines): GATGCTCTGA AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTGGTGAG CTGAGCTTTA 122115 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATGCTCTGA AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTG..... .......... 45 ATATTTCCTG CAGACTTGTG CTGCTATAGG TTGTTTGAGT CCCTTTTCCA TTCTATGAGT 122055 .......... .......... .......... .......... .......... .......... 45 TATTTATTGT TCTCTATTTA CAGGTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT 121995 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT 82 TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG 121935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG 142 AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA 121875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA 202 CCTGCCTGGG TGACTTGTAT AGTATTTCCT GGATGGAGGA CAGGTACATG CGGTTTTTCT 121815 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCTGCCTGGG TGACTTGTAT AGTATTTCCT GGATGGAGGA CAG....... .......... 245 GCGTTATATA AATTCCATGT GAAAAACTGT AGGAAATATG AGTTCACGAT GAATTTTGAC 121755 .......... .......... .......... .......... .......... .......... 245 TATGATGTTT GTCTAATGTG TTGGCTTCTT GGTTGTCTAT GTTTGGAATC ATAAGTTTGC 121695 .......... .......... .......... .......... .......... .......... 245 CAGTCTTATA AATATCATGG CAATCGAAAT TAAAGATATT CTCAATGTTT AAACAACGTC 121635 .......... .......... .......... .......... .......... .......... 245 TGTATCAGCA GACAACTATG AAAAACATTA GTTTATTGAG TCCTATAAGT ATTTTTTGCC 121575 .......... .......... .......... .......... .......... .......... 245 ATAGAAATTG AATACATTCT GTGATTCTAC ACCAGAGATC ATATAACTCA CAAGTTAATA 121515 .......... .......... .......... .......... .......... .......... 245 CTTGAGAGTT TGTGAGTTGC CAATGCGAGC TTGGGCTTGT TATATGAGGA TTTCCTTCCA 121455 .......... .......... .......... .......... .......... .......... 245 TTTGTTATTC CTTTACGTTC AACTTTTTTC ATAATGCAAT TATTAAATAT GCCACTTAGC 121395 .......... .......... .......... .......... .......... .......... 245 TACCTTTACC AGTTGAGATT CAGGCATAGT TATCATTACT GTAAATCTGC TTGTGAAATT 121335 .......... .......... .......... .......... .......... .......... 245 ATTTAATGGA TTTCAACAGC TTAATTTTTG TTGACTCTGT TATTTGTATC TGAGCAGTGA 121275 ||| .......... .......... .......... .......... .......... .......TGA 248 AAGACACAAC CTGCGGACTG AAAGTTTGAA GCAGCAATAT CACCTGGTAA GAGCTTATGG 121215 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAGACACAAC CTGCGGACTG AAAGTTTGAA GCAGCAATAT CACCTG.... .......... 294 ACATGAAGAA TTGGGATAAT CTATAATAGA ATTGATGACT CGTTAGAAAA GTAAAATGTA 121155 .......... .......... .......... .......... .......... .......... 294 ATAGTAATAA AAAGAACTTA GAAAGCGACG CCAATATCTT TCAGTTGTGC ATAGTGGGAG 121095 .......... .......... .......... .......... .......... .......... 294 AAGGGGTAAA GGGAGGAAGT AAAAATGCCA TTTTATATTT ATGTAGCTAT TACTGCAAAT 121035 .......... .......... .......... .......... .......... .......... 294 AGTCGATGTG CATTATTTCT GCAATGCACT TCTTTTTTAT GATGCCGTTT GAGAATTGTG 120975 .......... .......... .......... .......... .......... .......... 294 TACAAGGCAT CAGCTCTAAT TCCTGGTTAT GCAGGTCAAA GAGAGAACTG CCAGTGGGAA 120915 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTCAAA GAGAGAACTG CCAGTGGGAA 320 TCCTGCCTAT GGTTCGCATG TCATGCAATA TGGTGATGTA CATCTCAGCA AGGATGCTGT 120855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGCCTAT GGTTCGCATG TCATGCAATA TGGTGATGTA CATCTCAGCA AGGATGCTGT 380 ATTCCTATAT ATGGGTACCG ATCCTGCAAA TGATAATTCT ACTTTTATGG ATGAC 120800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTCCTATAT ATGGGTACCG ATCCTGCAAA TGATAATTCT ACTTTTATGG ATGAC 435 hqPGS_C08HBa0197A05.1-_SGN-E294970+ (122174 122130,122031 121832,121277 121229,120940 120800) ******************************************************************************** EST sequence 98 +strand 625 n (File: SGN-E369713+) 1 TTACAACGGA GTACCTAAGG ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 61 TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 121 TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTGGAAT 181 GCCTACCAAT CCTTACCTCT ATGCAAATGA TCTGATTGAT GCTCTGAAAA TGAAGCATGC 241 TTCGGGAACA TACAAAAGCT TGGTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT 301 TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA 361 GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC 421 CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AGTGAAAGAC ACAACCTGCG 481 GACTGAAAGT TTGAAGCAGC AATATCACCT GGTCAAAGAG AGAACTGCCA GTGGGAATCC 541 TGCCTATGGT TCGCATGTCA TGCAATATGG TGATGTACAT CTCAGCAAGG ATGCTGTATT 601 TCTATATATG GGTACCGATC CTGCA Predicted gene structure (within gDNA segment 123926 to 120217): Exon 1 123323 123305 ( 19 n); cDNA 1 19 ( 19 n); score: 1.000 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 123154 122998 ( 157 n); cDNA 20 176 ( 157 n); score: 1.000 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 177 262 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121832 ( 200 n); cDNA 263 462 ( 200 n); score: 1.000 Intron 4 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 121277 121229 ( 49 n); cDNA 463 511 ( 49 n); score: 1.000 Intron 5 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 6 120940 120827 ( 114 n); cDNA 512 625 ( 114 n); score: 0.991 MATCH C08HBa0197A05.1- SGN-E369713+ 0.998 625 1.000 C PGS_C08HBa0197A05.1-_SGN-E369713+ (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120827) Alignment (genomic DNA sequence = upper lines): TTACAACGGA GTACCTAAGG TAAGTTTGTT TCCGTAAATT TTACATTTAC CTAGTAATAA 123264 |||||||||| ||||||||| TTACAACGGA GTACCTAAG. .......... .......... .......... .......... 19 GTAAAACTGT TTCTGATATT GTCTCTTGAG GCAGGATTAC ATGGGGGATG ATGTTACTGT 123204 .......... .......... .......... .......... .......... .......... 19 TTTACATTTA CCTAGTAATA ACAGTTTCTG ATATTGTCTC TTGAGGCAGG ATTACACGGG 123144 | |||||||||| .......... .......... .......... .......... .........G ATTACACGGG 30 GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 123084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 90 CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 123024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 150 TGATCATGGA GGTGCTGGAG TGCTTGGTGA GTAGCTTCAT TATACTTGAT CCTTTTCTGT 122964 |||||||||| |||||||||| |||||| TGATCATGGA GGTGCTGGAG TGCTTG.... .......... .......... .......... 176 TCATGTATCC TCTATGCCCA TATTTAGTAA TGATGTTTTT ATAGTGCTAG AAAATGATGT 122904 .......... .......... .......... .......... .......... .......... 176 TTACTGGTTC TTGTTCTTTT AGACAAACAG GACGTAAATT GGTTATGCAT CTAACTGTTA 122844 .......... .......... .......... .......... .......... .......... 176 TCTGTTGAAT ATCAACAGTT CTTCAAAATT CTGTTTGCAC GGAAAAAGTT TGGGAAAATC 122784 .......... .......... .......... .......... .......... .......... 176 CTATTGGTAT TGAAAAAAAG GGCACTCGAC TTACTAATTG TGTCAATAGG GCAATTAGTA 122724 .......... .......... .......... .......... .......... .......... 176 GTTTCTTGAT TTTATCATAG ACATTATTTT TCTAGGATTC ACAATTACTA TCTACAAGCA 122664 .......... .......... .......... .......... .......... .......... 176 TATACCTTCC TCGAGCGGAA CCTATTCATT TTAATTGTTA AACAGTATTC CCAAGGTTAA 122604 .......... .......... .......... .......... .......... .......... 176 TATGCCATCC TAATTAACAA TAACATGTTT GAATTTTTTG ATTATGATAT AGGCTGCTAT 122544 .......... .......... .......... .......... .......... .......... 176 ACTCCACAAG AAATCACTAG CTAAGTTAAT TCAGAATCTG TCTCATTTTA ATGGTTTTAT 122484 .......... .......... .......... .......... .......... .......... 176 TATGTCTCTT ATGAACAATC TTCTCTTTTG ATCTTTCAAG TTTTGAGCAA TCACTGTTGT 122424 .......... .......... .......... .......... .......... .......... 176 ATGTGAAGTT CTATCATTTG TTTGGATCAT GGGTGAGTTG GTTATTCTGG GGATGAATAT 122364 .......... .......... .......... .......... .......... .......... 176 AATGAGACAG GACATGTTTT GTTGGATCAA AGTGTTGAAG GCTTGCTGTG TCAATTATAT 122304 .......... .......... .......... .......... .......... .......... 176 TTTGCATTTG ATGGGCTTTT TAAATTGCAT GAAGAATAAT TTATAGTTCC TTCACTTCAT 122244 .......... .......... .......... .......... .......... .......... 176 ATACTAATAA TAGTGTCATG TCTTCTAGGA ATGCCTACCA ATCCTTACCT CTATGCAAAT 122184 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA ATGCCTACCA ATCCTTACCT CTATGCAAAT 208 GATCTGATTG ATGCTCTGAA AATGAAGCAT GCTTCGGGAA CATACAAAAG CTTGGTGAGC 122124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATCTGATTG ATGCTCTGAA AATGAAGCAT GCTTCGGGAA CATACAAAAG CTTG...... 262 TGAGCTTTAA TATTTCCTGC AGACTTGTGC TGCTATAGGT TGTTTGAGTC CCTTTTCCAT 122064 .......... .......... .......... .......... .......... .......... 262 TCTATGAGTT ATTTATTGTT CTCTATTTAC AGGTATTTTA CCTTGAAGCT TGTGAGTCTG 122004 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTATTTTA CCTTGAAGCT TGTGAGTCTG 290 GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA 121944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA 350 ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG 121884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA GTACCCTAGT CCTCCTATCG 410 AATATGACAC CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AGGTACATGC 121824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AATATGACAC CTGCCTGGGT GACTTGTATA GTATTTCCTG GATGGAGGAC AG........ 462 GGTTTTTCTG CGTTATATAA ATTCCATGTG AAAAACTGTA GGAAATATGA GTTCACGATG 121764 .......... .......... .......... .......... .......... .......... 462 AATTTTGACT ATGATGTTTG TCTAATGTGT TGGCTTCTTG GTTGTCTATG TTTGGAATCA 121704 .......... .......... .......... .......... .......... .......... 462 TAAGTTTGCC AGTCTTATAA ATATCATGGC AATCGAAATT AAAGATATTC TCAATGTTTA 121644 .......... .......... .......... .......... .......... .......... 462 AACAACGTCT GTATCAGCAG ACAACTATGA AAAACATTAG TTTATTGAGT CCTATAAGTA 121584 .......... .......... .......... .......... .......... .......... 462 TTTTTTGCCA TAGAAATTGA ATACATTCTG TGATTCTACA CCAGAGATCA TATAACTCAC 121524 .......... .......... .......... .......... .......... .......... 462 AAGTTAATAC TTGAGAGTTT GTGAGTTGCC AATGCGAGCT TGGGCTTGTT ATATGAGGAT 121464 .......... .......... .......... .......... .......... .......... 462 TTCCTTCCAT TTGTTATTCC TTTACGTTCA ACTTTTTTCA TAATGCAATT ATTAAATATG 121404 .......... .......... .......... .......... .......... .......... 462 CCACTTAGCT ACCTTTACCA GTTGAGATTC AGGCATAGTT ATCATTACTG TAAATCTGCT 121344 .......... .......... .......... .......... .......... .......... 462 TGTGAAATTA TTTAATGGAT TTCAACAGCT TAATTTTTGT TGACTCTGTT ATTTGTATCT 121284 .......... .......... .......... .......... .......... .......... 462 GAGCAGTGAA AGACACAACC TGCGGACTGA AAGTTTGAAG CAGCAATATC ACCTGGTAAG 121224 |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ......TGAA AGACACAACC TGCGGACTGA AAGTTTGAAG CAGCAATATC ACCTG..... 511 AGCTTATGGA CATGAAGAAT TGGGATAATC TATAATAGAA TTGATGACTC GTTAGAAAAG 121164 .......... .......... .......... .......... .......... .......... 511 TAAAATGTAA TAGTAATAAA AAGAACTTAG AAAGCGACGC CAATATCTTT CAGTTGTGCA 121104 .......... .......... .......... .......... .......... .......... 511 TAGTGGGAGA AGGGGTAAAG GGAGGAAGTA AAAATGCCAT TTTATATTTA TGTAGCTATT 121044 .......... .......... .......... .......... .......... .......... 511 ACTGCAAATA GTCGATGTGC ATTATTTCTG CAATGCACTT CTTTTTTATG ATGCCGTTTG 120984 .......... .......... .......... .......... .......... .......... 511 AGAATTGTGT ACAAGGCATC AGCTCTAATT CCTGGTTATG CAGGTCAAAG AGAGAACTGC 120924 ||||||| |||||||||| .......... .......... .......... .......... ...GTCAAAG AGAGAACTGC 528 CAGTGGGAAT CCTGCCTATG GTTCGCATGT CATGCAATAT GGTGATGTAC ATCTCAGCAA 120864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGGGAAT CCTGCCTATG GTTCGCATGT CATGCAATAT GGTGATGTAC ATCTCAGCAA 588 GGATGCTGTA TTCCTATATA TGGGTACCGA TCCTGCA 120827 |||||||||| || ||||||| |||||||||| ||||||| GGATGCTGTA TTTCTATATA TGGGTACCGA TCCTGCA 625 hqPGS_C08HBa0197A05.1-_SGN-E369713+ (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120827) ******************************************************************************** EST sequence 103 +strand 537 n (File: SGN-E331090+) 1 GACAACTTTC TTGCTGCTCT CCTTGGGAAC AAAACTGCAC TTACCGGAGG CAGTGGAAAG 61 GTTGTAGATA GTGGTCCAAA TGATCATATC TTCATCTTTT ATAGTGATCA TGGAGGTGCT 121 GGAGTGCTTG GAATGCCTAC CAATCCTTAC CTCTATGCAA ATGATCTGAT TGATGCTCTG 181 AAAATGAAGC ATGCTTCGGG AACATACAAA AGCTTGGTAT TTTACCTTGA AGCTTGTGAG 241 TCTGGAAGTA TGTTTGAGGG TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACAACAGCA 301 TCAAATGCTG ATGAGAGCAG CTGGGGAACC TATTGCCCAG GGGAGTACCC TAGTCCTCCT 361 ATCGAATATG ACACCTGCCT GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAGTGAA 421 AGACACAACC TGCGGACTGA AAGTTTGAAG CAGCAATATC ACCTGGTCAA AGAGAGAACT 481 GCCAGTGGGA ATCCTGCCTA TGGTTCGCAT GTCATGCAAT ATGGTGATGT ACATCTC Predicted gene structure (within gDNA segment 123727 to 120259): Exon 1 123127 122998 ( 130 n); cDNA 1 130 ( 130 n); score: 1.000 Intron 1 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 2 122215 122130 ( 86 n); cDNA 131 216 ( 86 n); score: 1.000 Intron 2 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 122031 121832 ( 200 n); cDNA 217 416 ( 200 n); score: 1.000 Intron 3 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 121277 121229 ( 49 n); cDNA 417 465 ( 49 n); score: 1.000 Intron 4 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 5 120940 120869 ( 72 n); cDNA 466 537 ( 72 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E331090+ 1.000 537 1.000 C PGS_C08HBa0197A05.1-_SGN-E331090+ (123127 122998,122215 122130,122031 121832,121277 121229,120940 120869) Alignment (genomic DNA sequence = upper lines): GACAACTTTC TTGCTGCTCT CCTTGGGAAC AAAACTGCAC TTACCGGAGG CAGTGGAAAG 123068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAACTTTC TTGCTGCTCT CCTTGGGAAC AAAACTGCAC TTACCGGAGG CAGTGGAAAG 60 GTTGTAGATA GTGGTCCAAA TGATCATATC TTCATCTTTT ATAGTGATCA TGGAGGTGCT 123008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTAGATA GTGGTCCAAA TGATCATATC TTCATCTTTT ATAGTGATCA TGGAGGTGCT 120 GGAGTGCTTG GTGAGTAGCT TCATTATACT TGATCCTTTT CTGTTCATGT ATCCTCTATG 122948 |||||||||| GGAGTGCTTG .......... .......... .......... .......... .......... 130 CCCATATTTA GTAATGATGT TTTTATAGTG CTAGAAAATG ATGTTTACTG GTTCTTGTTC 122888 .......... .......... .......... .......... .......... .......... 130 TTTTAGACAA ACAGGACGTA AATTGGTTAT GCATCTAACT GTTATCTGTT GAATATCAAC 122828 .......... .......... .......... .......... .......... .......... 130 AGTTCTTCAA AATTCTGTTT GCACGGAAAA AGTTTGGGAA AATCCTATTG GTATTGAAAA 122768 .......... .......... .......... .......... .......... .......... 130 AAAGGGCACT CGACTTACTA ATTGTGTCAA TAGGGCAATT AGTAGTTTCT TGATTTTATC 122708 .......... .......... .......... .......... .......... .......... 130 ATAGACATTA TTTTTCTAGG ATTCACAATT ACTATCTACA AGCATATACC TTCCTCGAGC 122648 .......... .......... .......... .......... .......... .......... 130 GGAACCTATT CATTTTAATT GTTAAACAGT ATTCCCAAGG TTAATATGCC ATCCTAATTA 122588 .......... .......... .......... .......... .......... .......... 130 ACAATAACAT GTTTGAATTT TTTGATTATG ATATAGGCTG CTATACTCCA CAAGAAATCA 122528 .......... .......... .......... .......... .......... .......... 130 CTAGCTAAGT TAATTCAGAA TCTGTCTCAT TTTAATGGTT TTATTATGTC TCTTATGAAC 122468 .......... .......... .......... .......... .......... .......... 130 AATCTTCTCT TTTGATCTTT CAAGTTTTGA GCAATCACTG TTGTATGTGA AGTTCTATCA 122408 .......... .......... .......... .......... .......... .......... 130 TTTGTTTGGA TCATGGGTGA GTTGGTTATT CTGGGGATGA ATATAATGAG ACAGGACATG 122348 .......... .......... .......... .......... .......... .......... 130 TTTTGTTGGA TCAAAGTGTT GAAGGCTTGC TGTGTCAATT ATATTTTGCA TTTGATGGGC 122288 .......... .......... .......... .......... .......... .......... 130 TTTTTAAATT GCATGAAGAA TAATTTATAG TTCCTTCACT TCATATACTA ATAATAGTGT 122228 .......... .......... .......... .......... .......... .......... 130 CATGTCTTCT AGGAATGCCT ACCAATCCTT ACCTCTATGC AAATGATCTG ATTGATGCTC 122168 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAATGCCT ACCAATCCTT ACCTCTATGC AAATGATCTG ATTGATGCTC 178 TGAAAATGAA GCATGCTTCG GGAACATACA AAAGCTTGGT GAGCTGAGCT TTAATATTTC 122108 |||||||||| |||||||||| |||||||||| |||||||| TGAAAATGAA GCATGCTTCG GGAACATACA AAAGCTTG.. .......... .......... 216 CTGCAGACTT GTGCTGCTAT AGGTTGTTTG AGTCCCTTTT CCATTCTATG AGTTATTTAT 122048 .......... .......... .......... .......... .......... .......... 216 TGTTCTCTAT TTACAGGTAT TTTACCTTGA AGCTTGTGAG TCTGGAAGTA TGTTTGAGGG 121988 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTAT TTTACCTTGA AGCTTGTGAG TCTGGAAGTA TGTTTGAGGG 260 TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACAACAGCA TCAAATGCTG ATGAGAGCAG 121928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACAACAGCA TCAAATGCTG ATGAGAGCAG 320 CTGGGGAACC TATTGCCCAG GGGAGTACCC TAGTCCTCCT ATCGAATATG ACACCTGCCT 121868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGGAACC TATTGCCCAG GGGAGTACCC TAGTCCTCCT ATCGAATATG ACACCTGCCT 380 GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAGGTAC ATGCGGTTTT TCTGCGTTAT 121808 |||||||||| |||||||||| |||||||||| |||||| GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAG.... .......... .......... 416 ATAAATTCCA TGTGAAAAAC TGTAGGAAAT ATGAGTTCAC GATGAATTTT GACTATGATG 121748 .......... .......... .......... .......... .......... .......... 416 TTTGTCTAAT GTGTTGGCTT CTTGGTTGTC TATGTTTGGA ATCATAAGTT TGCCAGTCTT 121688 .......... .......... .......... .......... .......... .......... 416 ATAAATATCA TGGCAATCGA AATTAAAGAT ATTCTCAATG TTTAAACAAC GTCTGTATCA 121628 .......... .......... .......... .......... .......... .......... 416 GCAGACAACT ATGAAAAACA TTAGTTTATT GAGTCCTATA AGTATTTTTT GCCATAGAAA 121568 .......... .......... .......... .......... .......... .......... 416 TTGAATACAT TCTGTGATTC TACACCAGAG ATCATATAAC TCACAAGTTA ATACTTGAGA 121508 .......... .......... .......... .......... .......... .......... 416 GTTTGTGAGT TGCCAATGCG AGCTTGGGCT TGTTATATGA GGATTTCCTT CCATTTGTTA 121448 .......... .......... .......... .......... .......... .......... 416 TTCCTTTACG TTCAACTTTT TTCATAATGC AATTATTAAA TATGCCACTT AGCTACCTTT 121388 .......... .......... .......... .......... .......... .......... 416 ACCAGTTGAG ATTCAGGCAT AGTTATCATT ACTGTAAATC TGCTTGTGAA ATTATTTAAT 121328 .......... .......... .......... .......... .......... .......... 416 GGATTTCAAC AGCTTAATTT TTGTTGACTC TGTTATTTGT ATCTGAGCAG TGAAAGACAC 121268 |||||||||| .......... .......... .......... .......... .......... TGAAAGACAC 426 AACCTGCGGA CTGAAAGTTT GAAGCAGCAA TATCACCTGG TAAGAGCTTA TGGACATGAA 121208 |||||||||| |||||||||| |||||||||| ||||||||| AACCTGCGGA CTGAAAGTTT GAAGCAGCAA TATCACCTG. .......... .......... 465 GAATTGGGAT AATCTATAAT AGAATTGATG ACTCGTTAGA AAAGTAAAAT GTAATAGTAA 121148 .......... .......... .......... .......... .......... .......... 465 TAAAAAGAAC TTAGAAAGCG ACGCCAATAT CTTTCAGTTG TGCATAGTGG GAGAAGGGGT 121088 .......... .......... .......... .......... .......... .......... 465 AAAGGGAGGA AGTAAAAATG CCATTTTATA TTTATGTAGC TATTACTGCA AATAGTCGAT 121028 .......... .......... .......... .......... .......... .......... 465 GTGCATTATT TCTGCAATGC ACTTCTTTTT TATGATGCCG TTTGAGAATT GTGTACAAGG 120968 .......... .......... .......... .......... .......... .......... 465 CATCAGCTCT AATTCCTGGT TATGCAGGTC AAAGAGAGAA CTGCCAGTGG GAATCCTGCC 120908 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTC AAAGAGAGAA CTGCCAGTGG GAATCCTGCC 498 TATGGTTCGC ATGTCATGCA ATATGGTGAT GTACATCTC 120869 |||||||||| |||||||||| |||||||||| ||||||||| TATGGTTCGC ATGTCATGCA ATATGGTGAT GTACATCTC 537 hqPGS_C08HBa0197A05.1-_SGN-E331090+ (123127 122998,122215 122130,122031 121832,121277 121229,120940 120869) ******************************************************************************** EST sequence 39 +strand 527 n (File: SGN-E248588+) 1 AACTTTCTTG CTGCTCTCCT TGGGAACAAA ACTGCACTTA CCGGAGGCAG TGGAAAGGTT 61 GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG AGGTGCTGGA 121 GTGCTTGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG ATCTGATTGA TGCTCTGAAA 181 ATGAAGCATG CTTCGGGAAC ATACAAAAGC TTGGTATTTT ACCTTGAAGC TTGTGAGTCT 241 GGAAGTATGT TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA 301 AATGCTGATG AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC 361 GAATATGACA CCTGCCTGGG TGACTTGTAT AGTATTTCCT GGATGGAGGA CAGTGAAAGA 421 CACAACCTGC GGACTGAAAG TTTGAAGCAG CAATATCACC TGGTCAAAGA GAGAACTGCC 481 AGTGGGAATC CTGCCTATGG TTCGCATGTC ATGCAATATG GTGATGT Predicted gene structure (within gDNA segment 123724 to 120266): Exon 1 123124 122998 ( 127 n); cDNA 1 127 ( 127 n); score: 1.000 Intron 1 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 2 122215 122130 ( 86 n); cDNA 128 213 ( 86 n); score: 1.000 Intron 2 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 122031 121832 ( 200 n); cDNA 214 413 ( 200 n); score: 1.000 Intron 3 121831 121278 ( 554 n); Pd: 0.812 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 121277 121229 ( 49 n); cDNA 414 462 ( 49 n); score: 1.000 Intron 4 121228 120941 ( 288 n); Pd: 0.928 (s: 1.00), Pa: 0.853 (s: 1.00) Exon 5 120940 120876 ( 65 n); cDNA 463 527 ( 65 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E248588+ 1.000 527 1.000 C PGS_C08HBa0197A05.1-_SGN-E248588+ (123124 122998,122215 122130,122031 121832,121277 121229,120940 120876) Alignment (genomic DNA sequence = upper lines): AACTTTCTTG CTGCTCTCCT TGGGAACAAA ACTGCACTTA CCGGAGGCAG TGGAAAGGTT 123065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCTTG CTGCTCTCCT TGGGAACAAA ACTGCACTTA CCGGAGGCAG TGGAAAGGTT 60 GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG AGGTGCTGGA 123005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG AGGTGCTGGA 120 GTGCTTGGTG AGTAGCTTCA TTATACTTGA TCCTTTTCTG TTCATGTATC CTCTATGCCC 122945 ||||||| GTGCTTG... .......... .......... .......... .......... .......... 127 ATATTTAGTA ATGATGTTTT TATAGTGCTA GAAAATGATG TTTACTGGTT CTTGTTCTTT 122885 .......... .......... .......... .......... .......... .......... 127 TAGACAAACA GGACGTAAAT TGGTTATGCA TCTAACTGTT ATCTGTTGAA TATCAACAGT 122825 .......... .......... .......... .......... .......... .......... 127 TCTTCAAAAT TCTGTTTGCA CGGAAAAAGT TTGGGAAAAT CCTATTGGTA TTGAAAAAAA 122765 .......... .......... .......... .......... .......... .......... 127 GGGCACTCGA CTTACTAATT GTGTCAATAG GGCAATTAGT AGTTTCTTGA TTTTATCATA 122705 .......... .......... .......... .......... .......... .......... 127 GACATTATTT TTCTAGGATT CACAATTACT ATCTACAAGC ATATACCTTC CTCGAGCGGA 122645 .......... .......... .......... .......... .......... .......... 127 ACCTATTCAT TTTAATTGTT AAACAGTATT CCCAAGGTTA ATATGCCATC CTAATTAACA 122585 .......... .......... .......... .......... .......... .......... 127 ATAACATGTT TGAATTTTTT GATTATGATA TAGGCTGCTA TACTCCACAA GAAATCACTA 122525 .......... .......... .......... .......... .......... .......... 127 GCTAAGTTAA TTCAGAATCT GTCTCATTTT AATGGTTTTA TTATGTCTCT TATGAACAAT 122465 .......... .......... .......... .......... .......... .......... 127 CTTCTCTTTT GATCTTTCAA GTTTTGAGCA ATCACTGTTG TATGTGAAGT TCTATCATTT 122405 .......... .......... .......... .......... .......... .......... 127 GTTTGGATCA TGGGTGAGTT GGTTATTCTG GGGATGAATA TAATGAGACA GGACATGTTT 122345 .......... .......... .......... .......... .......... .......... 127 TGTTGGATCA AAGTGTTGAA GGCTTGCTGT GTCAATTATA TTTTGCATTT GATGGGCTTT 122285 .......... .......... .......... .......... .......... .......... 127 TTAAATTGCA TGAAGAATAA TTTATAGTTC CTTCACTTCA TATACTAATA ATAGTGTCAT 122225 .......... .......... .......... .......... .......... .......... 127 GTCTTCTAGG AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT GATGCTCTGA 122165 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT GATGCTCTGA 178 AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTGGTGAG CTGAGCTTTA ATATTTCCTG 122105 |||||||||| |||||||||| |||||||||| ||||| AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTG..... .......... .......... 213 CAGACTTGTG CTGCTATAGG TTGTTTGAGT CCCTTTTCCA TTCTATGAGT TATTTATTGT 122045 .......... .......... .......... .......... .......... .......... 213 TCTCTATTTA CAGGTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT TTGAGGGTCT 121985 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT TTGAGGGTCT 260 TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG AGAGCAGCTG 121925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG AGAGCAGCTG 320 GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA CCTGCCTGGG 121865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA CCTGCCTGGG 380 TGACTTGTAT AGTATTTCCT GGATGGAGGA CAGGTACATG CGGTTTTTCT GCGTTATATA 121805 |||||||||| |||||||||| |||||||||| ||| TGACTTGTAT AGTATTTCCT GGATGGAGGA CAG....... .......... .......... 413 AATTCCATGT GAAAAACTGT AGGAAATATG AGTTCACGAT GAATTTTGAC TATGATGTTT 121745 .......... .......... .......... .......... .......... .......... 413 GTCTAATGTG TTGGCTTCTT GGTTGTCTAT GTTTGGAATC ATAAGTTTGC CAGTCTTATA 121685 .......... .......... .......... .......... .......... .......... 413 AATATCATGG CAATCGAAAT TAAAGATATT CTCAATGTTT AAACAACGTC TGTATCAGCA 121625 .......... .......... .......... .......... .......... .......... 413 GACAACTATG AAAAACATTA GTTTATTGAG TCCTATAAGT ATTTTTTGCC ATAGAAATTG 121565 .......... .......... .......... .......... .......... .......... 413 AATACATTCT GTGATTCTAC ACCAGAGATC ATATAACTCA CAAGTTAATA CTTGAGAGTT 121505 .......... .......... .......... .......... .......... .......... 413 TGTGAGTTGC CAATGCGAGC TTGGGCTTGT TATATGAGGA TTTCCTTCCA TTTGTTATTC 121445 .......... .......... .......... .......... .......... .......... 413 CTTTACGTTC AACTTTTTTC ATAATGCAAT TATTAAATAT GCCACTTAGC TACCTTTACC 121385 .......... .......... .......... .......... .......... .......... 413 AGTTGAGATT CAGGCATAGT TATCATTACT GTAAATCTGC TTGTGAAATT ATTTAATGGA 121325 .......... .......... .......... .......... .......... .......... 413 TTTCAACAGC TTAATTTTTG TTGACTCTGT TATTTGTATC TGAGCAGTGA AAGACACAAC 121265 ||| |||||||||| .......... .......... .......... .......... .......TGA AAGACACAAC 426 CTGCGGACTG AAAGTTTGAA GCAGCAATAT CACCTGGTAA GAGCTTATGG ACATGAAGAA 121205 |||||||||| |||||||||| |||||||||| |||||| CTGCGGACTG AAAGTTTGAA GCAGCAATAT CACCTG.... .......... .......... 462 TTGGGATAAT CTATAATAGA ATTGATGACT CGTTAGAAAA GTAAAATGTA ATAGTAATAA 121145 .......... .......... .......... .......... .......... .......... 462 AAAGAACTTA GAAAGCGACG CCAATATCTT TCAGTTGTGC ATAGTGGGAG AAGGGGTAAA 121085 .......... .......... .......... .......... .......... .......... 462 GGGAGGAAGT AAAAATGCCA TTTTATATTT ATGTAGCTAT TACTGCAAAT AGTCGATGTG 121025 .......... .......... .......... .......... .......... .......... 462 CATTATTTCT GCAATGCACT TCTTTTTTAT GATGCCGTTT GAGAATTGTG TACAAGGCAT 120965 .......... .......... .......... .......... .......... .......... 462 CAGCTCTAAT TCCTGGTTAT GCAGGTCAAA GAGAGAACTG CCAGTGGGAA TCCTGCCTAT 120905 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTCAAA GAGAGAACTG CCAGTGGGAA TCCTGCCTAT 498 GGTTCGCATG TCATGCAATA TGGTGATGT 120876 |||||||||| |||||||||| ||||||||| GGTTCGCATG TCATGCAATA TGGTGATGT 527 hqPGS_C08HBa0197A05.1-_SGN-E248588+ (123124 122998,122215 122130,122031 121832,121277 121229,120940 120876) ******************************************************************************** EST sequence 51 +strand 727 n (File: SGN-E340090+) 1 TTCTCGCCGG ATCAAATGGT TATTGGAATT ATAGACATCA GGCTGATGTA TGCCATGCGT 61 ATCAGCTATT GAGAAAAGGT GGTCTCAAAG ATGAAAATAT TATTGTCTTC ATGTATGATG 121 ACATTGCTCA CCATGAAGAG AACCCAAGAC CAGGAGTTAT TATTAATAGT CCTGCCGGTG 181 AGGATGTTTA CGAAGGAGTT CCTAAGGATT ACACGGGAGA TGATGTTAAT GTGCACAACT 241 TTTTAGCTGT TCTCCTTGGT AACAAAACTG CTCTTACTGG AGGTAGCGGA AAGGTGGTGA 301 ATAGTGGTCC AAATGATCAT ATTTTCATAT TCTATAGTGA TCATGGTGGC CCTGGCGTGC 361 TTGGGATGCC TACCAATCCT TATCTATATG CCGATGATCT AATTGCTGTG TTGAAAAAGA 421 AGCATGCCGC TGGGACATAT AAAAGCTTGG TATTGTACAT TGAAGCTTGC GAGTCTGGAA 481 GTATATTTGA GGGACTTCTT CCTAATGGTC TAAATATTTA TGCCACAACA GCTTCAAATG 541 CTGAAGAAAG CAGCTGGGGA ACCTATTGTC CTGGAGAATA TCCTAGTCCT CCTCCTGAAT 601 ATGAGACTTG CTTGGGTGAT TTGTATGCTG TTTCCTGGAT GGAGGACAGT GAAATGCACA 661 ACTTGCGGAC TGAAAATTTG AGGCAGCAGT ATCACTTGGT CAAAAGAGAA CTGCAATGGA 721 AATACTG Predicted gene structure (within gDNA segment 124803 to 116963): Exon 1 123469 123305 ( 165 n); cDNA 42 206 ( 165 n); score: 0.848 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 2 123154 122998 ( 157 n); cDNA 207 363 ( 157 n); score: 0.860 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.80) Exon 3 122215 122130 ( 86 n); cDNA 364 449 ( 86 n); score: 0.814 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 0.78), Pa: 0.996 (s: 0.90) Exon 4 122031 121832 ( 200 n); cDNA 450 649 ( 200 n); score: 0.860 Intron 4 121831 121278 ( 554 n); Pd: 0.812 (s: 0.86), Pa: 0.994 (s: 0.86) Exon 5 121277 121229 ( 49 n); cDNA 650 698 ( 49 n); score: 0.857 Intron 5 121228 120941 ( 288 n); Pd: 0.928 (s: 0.86), Pa: 0.853 (s: 0) Exon 6 120940 120910 ( 31 n); cDNA 699 727 ( 29 n); score: 0.839 MATCH C08HBa0197A05.1- SGN-E340090+ 0.850 688 0.946 C PGS_C08HBa0197A05.1-_SGN-E340090+ (123469 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120910) Alignment (genomic DNA sequence = upper lines): GCTGATATAT GTCATGCATA TCAACTGTTG AAGAAGGGTG GTCTCAAAGA TGAGAACATT 123410 |||||| ||| | ||||| || ||| || ||| | || |||| |||||||||| ||| || ||| GCTGATGTAT GCCATGCGTA TCAGCTATTG AGAAAAGGTG GTCTCAAAGA TGAAAATATT 101 GTTGTGTTCA TGTATGATGA CATTGCAAAC AATGAAGAGA ACCCAAGGCA AGGAGTTATC 123350 |||| |||| |||||||||| |||||| || ||||||||| ||||||| | ||||||||| ATTGTCTTCA TGTATGATGA CATTGCTCAC CATGAAGAGA ACCCAAGACC AGGAGTTATT 161 ATTAATAGCC CTCATGGTGA GGATGTTTAC AACGGAGTAC CTAAGGTAAG TTTGTTTCCG 123290 |||||||| | || ||||| |||||||||| | ||||| | ||||| ATTAATAGTC CTGCCGGTGA GGATGTTTAC GAAGGAGTTC CTAAG..... .......... 206 TAAATTTTAC ATTTACCTAG TAATAAGTAA AACTGTTTCT GATATTGTCT CTTGAGGCAG 123230 .......... .......... .......... .......... .......... .......... 206 GATTACATGG GGGATGATGT TACTGTTTTA CATTTACCTA GTAATAACAG TTTCTGATAT 123170 .......... .......... .......... .......... .......... .......... 206 TGTCTCTTGA GGCAGGATTA CACGGGGGAT GATGTTACTG TTGACAACTT TCTTGCTGCT 123110 ||||| |||||| ||| ||||||| || | ||||||| | | |||| | .......... .....GATTA CACGGGAGAT GATGTTAATG TGCACAACTT TTTAGCTGTT 251 CTCCTTGGGA ACAAAACTGC ACTTACCGGA GGCAGTGGAA AGGTTGTAGA TAGTGGTCCA 123050 |||||||| | |||||||||| ||||| ||| || || |||| |||| || | |||||||||| CTCCTTGGTA ACAAAACTGC TCTTACTGGA GGTAGCGGAA AGGTGGTGAA TAGTGGTCCA 311 AATGATCATA TCTTCATCTT TTATAGTGAT CATGGAGGTG CTGGAGTGCT TGGTGAGTAG 122990 |||||||||| | ||||| || ||||||||| ||||| || |||| ||||| || AATGATCATA TTTTCATATT CTATAGTGAT CATGGTGGCC CTGGCGTGCT TG........ 363 CTTCATTATA CTTGATCCTT TTCTGTTCAT GTATCCTCTA TGCCCATATT TAGTAATGAT 122930 .......... .......... .......... .......... .......... .......... 363 GTTTTTATAG TGCTAGAAAA TGATGTTTAC TGGTTCTTGT TCTTTTAGAC AAACAGGACG 122870 .......... .......... .......... .......... .......... .......... 363 TAAATTGGTT ATGCATCTAA CTGTTATCTG TTGAATATCA ACAGTTCTTC AAAATTCTGT 122810 .......... .......... .......... .......... .......... .......... 363 TTGCACGGAA AAAGTTTGGG AAAATCCTAT TGGTATTGAA AAAAAGGGCA CTCGACTTAC 122750 .......... .......... .......... .......... .......... .......... 363 TAATTGTGTC AATAGGGCAA TTAGTAGTTT CTTGATTTTA TCATAGACAT TATTTTTCTA 122690 .......... .......... .......... .......... .......... .......... 363 GGATTCACAA TTACTATCTA CAAGCATATA CCTTCCTCGA GCGGAACCTA TTCATTTTAA 122630 .......... .......... .......... .......... .......... .......... 363 TTGTTAAACA GTATTCCCAA GGTTAATATG CCATCCTAAT TAACAATAAC ATGTTTGAAT 122570 .......... .......... .......... .......... .......... .......... 363 TTTTTGATTA TGATATAGGC TGCTATACTC CACAAGAAAT CACTAGCTAA GTTAATTCAG 122510 .......... .......... .......... .......... .......... .......... 363 AATCTGTCTC ATTTTAATGG TTTTATTATG TCTCTTATGA ACAATCTTCT CTTTTGATCT 122450 .......... .......... .......... .......... .......... .......... 363 TTCAAGTTTT GAGCAATCAC TGTTGTATGT GAAGTTCTAT CATTTGTTTG GATCATGGGT 122390 .......... .......... .......... .......... .......... .......... 363 GAGTTGGTTA TTCTGGGGAT GAATATAATG AGACAGGACA TGTTTTGTTG GATCAAAGTG 122330 .......... .......... .......... .......... .......... .......... 363 TTGAAGGCTT GCTGTGTCAA TTATATTTTG CATTTGATGG GCTTTTTAAA TTGCATGAAG 122270 .......... .......... .......... .......... .......... .......... 363 AATAATTTAT AGTTCCTTCA CTTCATATAC TAATAATAGT GTCATGTCTT CTAGGAATGC 122210 | |||| .......... .......... .......... .......... .......... ....GGATGC 369 CTACCAATCC TTACCTCTAT GCAAATGATC TGATTGATGC TCTGAAAATG AAGCATGCTT 122150 |||||||||| ||| || ||| || |||||| | |||| || |||||| | |||||||| CTACCAATCC TTATCTATAT GCCGATGATC TAATTGCTGT GTTGAAAAAG AAGCATGCCG 429 CGGGAACATA CAAAAGCTTG GTGAGCTGAG CTTTAATATT TCCTGCAGAC TTGTGCTGCT 122090 | || ||||| ||||||||| CTGGGACATA TAAAAGCTTG .......... .......... .......... .......... 449 ATAGGTTGTT TGAGTCCCTT TTCCATTCTA TGAGTTATTT ATTGTTCTCT ATTTACAGGT 122030 || .......... .......... .......... .......... .......... ........GT 451 ATTTTACCTT GAAGCTTGTG AGTCTGGAAG TATGTTTGAG GGTCTTCTTC CTGAAGGTTT 121970 ||| ||| || |||||||| | |||||||||| ||| |||||| || ||||||| || | ||| | ATTGTACATT GAAGCTTGCG AGTCTGGAAG TATATTTGAG GGACTTCTTC CTAATGGTCT 511 AAACATCTAT GCCACAACAG CATCAAATGC TGATGAGAGC AGCTGGGGAA CCTATTGCCC 121910 ||| || ||| |||||||||| | |||||||| ||| || ||| |||||||||| ||||||| || AAATATTTAT GCCACAACAG CTTCAAATGC TGAAGAAAGC AGCTGGGGAA CCTATTGTCC 571 AGGGGAGTAC CCTAGTCCTC CTATCGAATA TGACACCTGC CTGGGTGACT TGTATAGTAT 121850 || || || |||||||||| || ||||| ||| || ||| ||||||| | ||||| | | TGGAGAATAT CCTAGTCCTC CTCCTGAATA TGAGACTTGC TTGGGTGATT TGTATGCTGT 631 TTCCTGGATG GAGGACAGGT ACATGCGGTT TTTCTGCGTT ATATAAATTC CATGTGAAAA 121790 |||||||||| |||||||| TTCCTGGATG GAGGACAG.. .......... .......... .......... .......... 649 ACTGTAGGAA ATATGAGTTC ACGATGAATT TTGACTATGA TGTTTGTCTA ATGTGTTGGC 121730 .......... .......... .......... .......... .......... .......... 649 TTCTTGGTTG TCTATGTTTG GAATCATAAG TTTGCCAGTC TTATAAATAT CATGGCAATC 121670 .......... .......... .......... .......... .......... .......... 649 GAAATTAAAG ATATTCTCAA TGTTTAAACA ACGTCTGTAT CAGCAGACAA CTATGAAAAA 121610 .......... .......... .......... .......... .......... .......... 649 CATTAGTTTA TTGAGTCCTA TAAGTATTTT TTGCCATAGA AATTGAATAC ATTCTGTGAT 121550 .......... .......... .......... .......... .......... .......... 649 TCTACACCAG AGATCATATA ACTCACAAGT TAATACTTGA GAGTTTGTGA GTTGCCAATG 121490 .......... .......... .......... .......... .......... .......... 649 CGAGCTTGGG CTTGTTATAT GAGGATTTCC TTCCATTTGT TATTCCTTTA CGTTCAACTT 121430 .......... .......... .......... .......... .......... .......... 649 TTTTCATAAT GCAATTATTA AATATGCCAC TTAGCTACCT TTACCAGTTG AGATTCAGGC 121370 .......... .......... .......... .......... .......... .......... 649 ATAGTTATCA TTACTGTAAA TCTGCTTGTG AAATTATTTA ATGGATTTCA ACAGCTTAAT 121310 .......... .......... .......... .......... .......... .......... 649 TTTTGTTGAC TCTGTTATTT GTATCTGAGC AGTGAAAGAC ACAACCTGCG GACTGAAAGT 121250 ||||| | ||||| |||| |||||||| | .......... .......... .......... ..TGAAATGC ACAACTTGCG GACTGAAAAT 677 TTGAAGCAGC AATATCACCT GGTAAGAGCT TATGGACATG AAGAATTGGG ATAATCTATA 121190 |||| ||||| | |||||| | | TTGAGGCAGC AGTATCACTT G......... .......... .......... .......... 698 ATAGAATTGA TGACTCGTTA GAAAAGTAAA ATGTAATAGT AATAAAAAGA ACTTAGAAAG 121130 .......... .......... .......... .......... .......... .......... 698 CGACGCCAAT ATCTTTCAGT TGTGCATAGT GGGAGAAGGG GTAAAGGGAG GAAGTAAAAA 121070 .......... .......... .......... .......... .......... .......... 698 TGCCATTTTA TATTTATGTA GCTATTACTG CAAATAGTCG ATGTGCATTA TTTCTGCAAT 121010 .......... .......... .......... .......... .......... .......... 698 GCACTTCTTT TTTATGATGC CGTTTGAGAA TTGTGTACAA GGCATCAGCT CTAATTCCTG 120950 .......... .......... .......... .......... .......... .......... 698 GTTATGCAGG TCAAAGAGAG AACTGCCAGT GGGAATCCTG 120910 | ||||| |||| ||||| || | || ||| ||| .........G TCAAA-AGAG AACTG-CAAT GGAAATACTG 727 hqPGS_C08HBa0197A05.1-_SGN-E340090+ (123469 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120910) ******************************************************************************** EST sequence 82 +strand 397 n (File: SGN-E274464+) 1 TGGAAATGTT GTAGATAGTG GTCCAAATGA TCATATGGGC ATCTTTTATA GTGATCATGG 61 AGGTGCTGGA GTGCTTGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG ATCTGATTGA 121 TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC TTGGTATTTT ACCTTGAAGC 181 TTGTGAGTCT GGAAGTATGT TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC 241 AACAGCATCA AATGCTGATG AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG 301 TCCTCCTATC GAATATGACA CCTGCCTGGG TGACTTGTAT AGAATTTCCT GGATGGAGGA 361 CAGTGAAAGA CACAACCTGC GGACTGAAAG TTTGAAG Predicted gene structure (within gDNA segment 123737 to 120634): Exon 1 123074 122998 ( 77 n); cDNA 1 77 ( 77 n); score: 0.948 Intron 1 122997 122216 ( 782 n); Pd: 0.992 (s: 0.94), Pa: 0.888 (s: 1.00) Exon 2 122215 122130 ( 86 n); cDNA 78 163 ( 86 n); score: 1.000 Intron 2 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 122031 121832 ( 200 n); cDNA 164 363 ( 200 n); score: 0.995 Intron 3 121831 121278 ( 554 n); Pd: 0.812 (s: 0.98), Pa: 0.994 (s: 0) Exon 4 121277 121244 ( 34 n); cDNA 364 397 ( 34 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E274464+ 0.986 397 1.000 C PGS_C08HBa0197A05.1-_SGN-E274464+ (123074 122998,122215 122130,122031 121832,121277 121244) Alignment (genomic DNA sequence = upper lines): TGGAAAGGTT GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG 123015 |||||| ||| |||||||||| |||||||||| |||||| | |||||||||| |||||||||| TGGAAATGTT GTAGATAGTG GTCCAAATGA TCATATGGGC ATCTTTTATA GTGATCATGG 60 AGGTGCTGGA GTGCTTGGTG AGTAGCTTCA TTATACTTGA TCCTTTTCTG TTCATGTATC 122955 |||||||||| ||||||| AGGTGCTGGA GTGCTTG... .......... .......... .......... .......... 77 CTCTATGCCC ATATTTAGTA ATGATGTTTT TATAGTGCTA GAAAATGATG TTTACTGGTT 122895 .......... .......... .......... .......... .......... .......... 77 CTTGTTCTTT TAGACAAACA GGACGTAAAT TGGTTATGCA TCTAACTGTT ATCTGTTGAA 122835 .......... .......... .......... .......... .......... .......... 77 TATCAACAGT TCTTCAAAAT TCTGTTTGCA CGGAAAAAGT TTGGGAAAAT CCTATTGGTA 122775 .......... .......... .......... .......... .......... .......... 77 TTGAAAAAAA GGGCACTCGA CTTACTAATT GTGTCAATAG GGCAATTAGT AGTTTCTTGA 122715 .......... .......... .......... .......... .......... .......... 77 TTTTATCATA GACATTATTT TTCTAGGATT CACAATTACT ATCTACAAGC ATATACCTTC 122655 .......... .......... .......... .......... .......... .......... 77 CTCGAGCGGA ACCTATTCAT TTTAATTGTT AAACAGTATT CCCAAGGTTA ATATGCCATC 122595 .......... .......... .......... .......... .......... .......... 77 CTAATTAACA ATAACATGTT TGAATTTTTT GATTATGATA TAGGCTGCTA TACTCCACAA 122535 .......... .......... .......... .......... .......... .......... 77 GAAATCACTA GCTAAGTTAA TTCAGAATCT GTCTCATTTT AATGGTTTTA TTATGTCTCT 122475 .......... .......... .......... .......... .......... .......... 77 TATGAACAAT CTTCTCTTTT GATCTTTCAA GTTTTGAGCA ATCACTGTTG TATGTGAAGT 122415 .......... .......... .......... .......... .......... .......... 77 TCTATCATTT GTTTGGATCA TGGGTGAGTT GGTTATTCTG GGGATGAATA TAATGAGACA 122355 .......... .......... .......... .......... .......... .......... 77 GGACATGTTT TGTTGGATCA AAGTGTTGAA GGCTTGCTGT GTCAATTATA TTTTGCATTT 122295 .......... .......... .......... .......... .......... .......... 77 GATGGGCTTT TTAAATTGCA TGAAGAATAA TTTATAGTTC CTTCACTTCA TATACTAATA 122235 .......... .......... .......... .......... .......... .......... 77 ATAGTGTCAT GTCTTCTAGG AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT 122175 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT 118 GATGCTCTGA AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTGGTGAG CTGAGCTTTA 122115 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATGCTCTGA AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTG..... .......... 163 ATATTTCCTG CAGACTTGTG CTGCTATAGG TTGTTTGAGT CCCTTTTCCA TTCTATGAGT 122055 .......... .......... .......... .......... .......... .......... 163 TATTTATTGT TCTCTATTTA CAGGTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT 121995 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT 200 TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG 121935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGGTCT TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG 260 AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA 121875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAGCTG GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA 320 CCTGCCTGGG TGACTTGTAT AGTATTTCCT GGATGGAGGA CAGGTACATG CGGTTTTTCT 121815 |||||||||| |||||||||| || ||||||| |||||||||| ||| CCTGCCTGGG TGACTTGTAT AGAATTTCCT GGATGGAGGA CAG....... .......... 363 GCGTTATATA AATTCCATGT GAAAAACTGT AGGAAATATG AGTTCACGAT GAATTTTGAC 121755 .......... .......... .......... .......... .......... .......... 363 TATGATGTTT GTCTAATGTG TTGGCTTCTT GGTTGTCTAT GTTTGGAATC ATAAGTTTGC 121695 .......... .......... .......... .......... .......... .......... 363 CAGTCTTATA AATATCATGG CAATCGAAAT TAAAGATATT CTCAATGTTT AAACAACGTC 121635 .......... .......... .......... .......... .......... .......... 363 TGTATCAGCA GACAACTATG AAAAACATTA GTTTATTGAG TCCTATAAGT ATTTTTTGCC 121575 .......... .......... .......... .......... .......... .......... 363 ATAGAAATTG AATACATTCT GTGATTCTAC ACCAGAGATC ATATAACTCA CAAGTTAATA 121515 .......... .......... .......... .......... .......... .......... 363 CTTGAGAGTT TGTGAGTTGC CAATGCGAGC TTGGGCTTGT TATATGAGGA TTTCCTTCCA 121455 .......... .......... .......... .......... .......... .......... 363 TTTGTTATTC CTTTACGTTC AACTTTTTTC ATAATGCAAT TATTAAATAT GCCACTTAGC 121395 .......... .......... .......... .......... .......... .......... 363 TACCTTTACC AGTTGAGATT CAGGCATAGT TATCATTACT GTAAATCTGC TTGTGAAATT 121335 .......... .......... .......... .......... .......... .......... 363 ATTTAATGGA TTTCAACAGC TTAATTTTTG TTGACTCTGT TATTTGTATC TGAGCAGTGA 121275 ||| .......... .......... .......... .......... .......... .......TGA 366 AAGACACAAC CTGCGGACTG AAAGTTTGAA G 121244 |||||||||| |||||||||| |||||||||| | AAGACACAAC CTGCGGACTG AAAGTTTGAA G 397 hqPGS_C08HBa0197A05.1-_SGN-E274464+ (123074 122998,122215 122130,122031 121832,121277 121244) ******************************************************************************** EST sequence 85 +strand 581 n (File: SGN-E273649+) 1 TATCATTAAT AGCCCTCATG GCGAGGATGT GTACAACGGA GTACCTAAGG ATTACATGGG 61 GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 121 CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 181 TGATCATGGA GGTGCTGGAG TGCTTGGAAT GCCTACCAAT CCTTACCTCT ATGCAAATGA 241 TCTGATTGAT GCTCTGAAAA TGAAGCATGC TTCGGGAACA TACAAAAGCT TGGTATTTTA 301 CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT 361 CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA 421 GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGGGT GACTTGTATA GTATTTCCTG 481 GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG AAAAACTGTA 541 GGAAATATGA GTTCACGATG AATTTTGACT ATGATGTTTG T Predicted gene structure (within gDNA segment 123953 to 121133): Exon 1 123353 123305 ( 49 n); cDNA 1 49 ( 49 n); score: 0.959 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 0.96), Pa: 0.995 (s: 0.98) Exon 2 123154 122998 ( 157 n); cDNA 50 206 ( 157 n); score: 0.994 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 207 292 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121743 ( 289 n); cDNA 293 581 ( 289 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E273649+ 0.998 581 1.000 C PGS_C08HBa0197A05.1-_SGN-E273649+ (123353 123305,123154 122998,122215 122130,122031 121743) Alignment (genomic DNA sequence = upper lines): TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAGG TAAGTTTGTT 123294 |||||||||| |||||||||| | |||||||| ||||||||| ||||||||| TATCATTAAT AGCCCTCATG GCGAGGATGT GTACAACGGA GTACCTAAG. .......... 49 TCCGTAAATT TTACATTTAC CTAGTAATAA GTAAAACTGT TTCTGATATT GTCTCTTGAG 123234 .......... .......... .......... .......... .......... .......... 49 GCAGGATTAC ATGGGGGATG ATGTTACTGT TTTACATTTA CCTAGTAATA ACAGTTTCTG 123174 .......... .......... .......... .......... .......... .......... 49 ATATTGTCTC TTGAGGCAGG ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 123114 | |||||| ||| |||||||||| |||||||||| |||||||||| .......... .........G ATTACATGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 90 TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 123054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 150 TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTGGTGA 122994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTG.... 206 GTAGCTTCAT TATACTTGAT CCTTTTCTGT TCATGTATCC TCTATGCCCA TATTTAGTAA 122934 .......... .......... .......... .......... .......... .......... 206 TGATGTTTTT ATAGTGCTAG AAAATGATGT TTACTGGTTC TTGTTCTTTT AGACAAACAG 122874 .......... .......... .......... .......... .......... .......... 206 GACGTAAATT GGTTATGCAT CTAACTGTTA TCTGTTGAAT ATCAACAGTT CTTCAAAATT 122814 .......... .......... .......... .......... .......... .......... 206 CTGTTTGCAC GGAAAAAGTT TGGGAAAATC CTATTGGTAT TGAAAAAAAG GGCACTCGAC 122754 .......... .......... .......... .......... .......... .......... 206 TTACTAATTG TGTCAATAGG GCAATTAGTA GTTTCTTGAT TTTATCATAG ACATTATTTT 122694 .......... .......... .......... .......... .......... .......... 206 TCTAGGATTC ACAATTACTA TCTACAAGCA TATACCTTCC TCGAGCGGAA CCTATTCATT 122634 .......... .......... .......... .......... .......... .......... 206 TTAATTGTTA AACAGTATTC CCAAGGTTAA TATGCCATCC TAATTAACAA TAACATGTTT 122574 .......... .......... .......... .......... .......... .......... 206 GAATTTTTTG ATTATGATAT AGGCTGCTAT ACTCCACAAG AAATCACTAG CTAAGTTAAT 122514 .......... .......... .......... .......... .......... .......... 206 TCAGAATCTG TCTCATTTTA ATGGTTTTAT TATGTCTCTT ATGAACAATC TTCTCTTTTG 122454 .......... .......... .......... .......... .......... .......... 206 ATCTTTCAAG TTTTGAGCAA TCACTGTTGT ATGTGAAGTT CTATCATTTG TTTGGATCAT 122394 .......... .......... .......... .......... .......... .......... 206 GGGTGAGTTG GTTATTCTGG GGATGAATAT AATGAGACAG GACATGTTTT GTTGGATCAA 122334 .......... .......... .......... .......... .......... .......... 206 AGTGTTGAAG GCTTGCTGTG TCAATTATAT TTTGCATTTG ATGGGCTTTT TAAATTGCAT 122274 .......... .......... .......... .......... .......... .......... 206 GAAGAATAAT TTATAGTTCC TTCACTTCAT ATACTAATAA TAGTGTCATG TCTTCTAGGA 122214 || .......... .......... .......... .......... .......... ........GA 208 ATGCCTACCA ATCCTTACCT CTATGCAAAT GATCTGATTG ATGCTCTGAA AATGAAGCAT 122154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTACCA ATCCTTACCT CTATGCAAAT GATCTGATTG ATGCTCTGAA AATGAAGCAT 268 GCTTCGGGAA CATACAAAAG CTTGGTGAGC TGAGCTTTAA TATTTCCTGC AGACTTGTGC 122094 |||||||||| |||||||||| |||| GCTTCGGGAA CATACAAAAG CTTG...... .......... .......... .......... 292 TGCTATAGGT TGTTTGAGTC CCTTTTCCAT TCTATGAGTT ATTTATTGTT CTCTATTTAC 122034 .......... .......... .......... .......... .......... .......... 292 AGGTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTCCTGAAG 121974 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTCCTGAAG 350 GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT 121914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT 410 GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGGGT GACTTGTATA 121854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGGGT GACTTGTATA 470 GTATTTCCTG GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG 121794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCCTG GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG 530 AAAAACTGTA GGAAATATGA GTTCACGATG AATTTTGACT ATGATGTTTG T 121743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAAAACTGTA GGAAATATGA GTTCACGATG AATTTTGACT ATGATGTTTG T 581 hqPGS_C08HBa0197A05.1-_SGN-E273649+ (123353 123305,123154 122998,122215 122130,122031 121743) ******************************************************************************** EST sequence 84 +strand 531 n (File: SGN-E273574+) 1 TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAGG ATTACATGGG 61 GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA CTGCACTTAC 121 CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA TCTTTTATAG 181 TGATCATGGA GGTGCTGGAG TGCTTGGAAT GCCTACCAAT CCTTACCTCT ATGCAAATGA 241 TCTGATTGAT GCTCTGAAAA TGAAGCATGC TTCGGGAACA TACAAAAGCT TGGTATTTTA 301 CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTACTGAAG GTTTAAACAT 361 CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT GCCCAGGGGA 421 GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGCGT GACTTGTATA GTATTTCCTG 481 GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG A Predicted gene structure (within gDNA segment 123953 to 121183): Exon 1 123353 123305 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 2 123154 122998 ( 157 n); cDNA 50 206 ( 157 n); score: 0.994 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 207 292 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121793 ( 239 n); cDNA 293 531 ( 239 n); score: 0.992 MATCH C08HBa0197A05.1- SGN-E273574+ 0.994 531 1.000 C PGS_C08HBa0197A05.1-_SGN-E273574+ (123353 123305,123154 122998,122215 122130,122031 121793) Alignment (genomic DNA sequence = upper lines): TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAGG TAAGTTTGTT 123294 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAG. .......... 49 TCCGTAAATT TTACATTTAC CTAGTAATAA GTAAAACTGT TTCTGATATT GTCTCTTGAG 123234 .......... .......... .......... .......... .......... .......... 49 GCAGGATTAC ATGGGGGATG ATGTTACTGT TTTACATTTA CCTAGTAATA ACAGTTTCTG 123174 .......... .......... .......... .......... .......... .......... 49 ATATTGTCTC TTGAGGCAGG ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 123114 | |||||| ||| |||||||||| |||||||||| |||||||||| .......... .........G ATTACATGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 90 TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 123054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 150 TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTGGTGA 122994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTG.... 206 GTAGCTTCAT TATACTTGAT CCTTTTCTGT TCATGTATCC TCTATGCCCA TATTTAGTAA 122934 .......... .......... .......... .......... .......... .......... 206 TGATGTTTTT ATAGTGCTAG AAAATGATGT TTACTGGTTC TTGTTCTTTT AGACAAACAG 122874 .......... .......... .......... .......... .......... .......... 206 GACGTAAATT GGTTATGCAT CTAACTGTTA TCTGTTGAAT ATCAACAGTT CTTCAAAATT 122814 .......... .......... .......... .......... .......... .......... 206 CTGTTTGCAC GGAAAAAGTT TGGGAAAATC CTATTGGTAT TGAAAAAAAG GGCACTCGAC 122754 .......... .......... .......... .......... .......... .......... 206 TTACTAATTG TGTCAATAGG GCAATTAGTA GTTTCTTGAT TTTATCATAG ACATTATTTT 122694 .......... .......... .......... .......... .......... .......... 206 TCTAGGATTC ACAATTACTA TCTACAAGCA TATACCTTCC TCGAGCGGAA CCTATTCATT 122634 .......... .......... .......... .......... .......... .......... 206 TTAATTGTTA AACAGTATTC CCAAGGTTAA TATGCCATCC TAATTAACAA TAACATGTTT 122574 .......... .......... .......... .......... .......... .......... 206 GAATTTTTTG ATTATGATAT AGGCTGCTAT ACTCCACAAG AAATCACTAG CTAAGTTAAT 122514 .......... .......... .......... .......... .......... .......... 206 TCAGAATCTG TCTCATTTTA ATGGTTTTAT TATGTCTCTT ATGAACAATC TTCTCTTTTG 122454 .......... .......... .......... .......... .......... .......... 206 ATCTTTCAAG TTTTGAGCAA TCACTGTTGT ATGTGAAGTT CTATCATTTG TTTGGATCAT 122394 .......... .......... .......... .......... .......... .......... 206 GGGTGAGTTG GTTATTCTGG GGATGAATAT AATGAGACAG GACATGTTTT GTTGGATCAA 122334 .......... .......... .......... .......... .......... .......... 206 AGTGTTGAAG GCTTGCTGTG TCAATTATAT TTTGCATTTG ATGGGCTTTT TAAATTGCAT 122274 .......... .......... .......... .......... .......... .......... 206 GAAGAATAAT TTATAGTTCC TTCACTTCAT ATACTAATAA TAGTGTCATG TCTTCTAGGA 122214 || .......... .......... .......... .......... .......... ........GA 208 ATGCCTACCA ATCCTTACCT CTATGCAAAT GATCTGATTG ATGCTCTGAA AATGAAGCAT 122154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTACCA ATCCTTACCT CTATGCAAAT GATCTGATTG ATGCTCTGAA AATGAAGCAT 268 GCTTCGGGAA CATACAAAAG CTTGGTGAGC TGAGCTTTAA TATTTCCTGC AGACTTGTGC 122094 |||||||||| |||||||||| |||| GCTTCGGGAA CATACAAAAG CTTG...... .......... .......... .......... 292 TGCTATAGGT TGTTTGAGTC CCTTTTCCAT TCTATGAGTT ATTTATTGTT CTCTATTTAC 122034 .......... .......... .......... .......... .......... .......... 292 AGGTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTCCTGAAG 121974 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ..GTATTTTA CCTTGAAGCT TGTGAGTCTG GAAGTATGTT TGAGGGTCTT CTTACTGAAG 350 GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT 121914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAAACAT CTATGCCACA ACAGCATCAA ATGCTGATGA GAGCAGCTGG GGAACCTATT 410 GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGGGT GACTTGTATA 121854 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GCCCAGGGGA GTACCCTAGT CCTCCTATCG AATATGACAC CTGCCTGCGT GACTTGTATA 470 GTATTTCCTG GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG 121794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCCTG GATGGAGGAC AGGTACATGC GGTTTTTCTG CGTTATATAA ATTCCATGTG 530 A 121793 | A 531 hqPGS_C08HBa0197A05.1-_SGN-E273574+ (123353 123305,123154 122998,122215 122130,122031 121793) ******************************************************************************** EST sequence 93 +strand 577 n (File: SGN-E299630+) 1 GAAGGGTGGT CTGAAAGATG AGAACATTGT TGCGTTCATG TGTGATGACA TTGCACACAG 61 TGAACAGAAC CCAAGGCAAG GAGTTATCAT TAATAGCCCT CATGGTGAGG ATGTTTACAA 121 CGGACTACCT AAGGATTACA CGGGGGATGA TGTTACTGTT GACAACTTTC TTGCTGCTCT 181 CCTTGGGAAC AAAACTGCAC TTACCGGAGG CAGTGGAAAG GTTGTAGATA GTGGTCCAAA 241 TGATCATATC TTCATCTTTT ATAGTGATCA TGGAGGTGCT GGAGTGCTTG GAATGCCTAC 301 CAATCCTTAC CTCTATGCAA ATGATCTGAT TGATGCTCTG AAAATGAAGC ATGCTTCGGG 361 AACATACAAA AGCTTGGTAT TTTACCTTGA AGCTTGTGAG TCTGGAAGTA TGTTTGAGGG 421 TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACATCAGCC TCAAATGCTG ATGAGAGCAG 481 CTGGCGAACC TATTGCCCAT GGGAGTACCC TAGTCCTTCT ATCGAATATG ACACCTGCCT 541 GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAGT Predicted gene structure (within gDNA segment 124622 to 121212): Exon 1 123437 123305 ( 133 n); cDNA 1 133 ( 133 n); score: 0.947 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 0.98), Pa: 0.995 (s: 1.00) Exon 2 123154 122998 ( 157 n); cDNA 134 290 ( 157 n); score: 1.000 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 291 376 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121832 ( 200 n); cDNA 377 576 ( 200 n); score: 0.975 MATCH C08HBa0197A05.1- SGN-E299630+ 0.979 576 0.998 C PGS_C08HBa0197A05.1-_SGN-E299630+ (123437 123305,123154 122998,122215 122130,122031 121832) Alignment (genomic DNA sequence = upper lines): GAAGGGTGGT CTCAAAGATG AGAACATTGT TGTGTTCATG TATGATGACA TTGCAAACAA 123378 |||||||||| || ||||||| |||||||||| || ||||||| | |||||||| ||||| ||| GAAGGGTGGT CTGAAAGATG AGAACATTGT TGCGTTCATG TGTGATGACA TTGCACACAG 60 TGAAGAGAAC CCAAGGCAAG GAGTTATCAT TAATAGCCCT CATGGTGAGG ATGTTTACAA 123318 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACAGAAC CCAAGGCAAG GAGTTATCAT TAATAGCCCT CATGGTGAGG ATGTTTACAA 120 CGGAGTACCT AAGGTAAGTT TGTTTCCGTA AATTTTACAT TTACCTAGTA ATAAGTAAAA 123258 |||| ||||| ||| CGGACTACCT AAG....... .......... .......... .......... .......... 133 CTGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACATGGGG GATGATGTTA CTGTTTTACA 123198 .......... .......... .......... .......... .......... .......... 133 TTTACCTAGT AATAACAGTT TCTGATATTG TCTCTTGAGG CAGGATTACA CGGGGGATGA 123138 ||||||| |||||||||| .......... .......... .......... .......... ...GATTACA CGGGGGATGA 150 TGTTACTGTT GACAACTTTC TTGCTGCTCT CCTTGGGAAC AAAACTGCAC TTACCGGAGG 123078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACTGTT GACAACTTTC TTGCTGCTCT CCTTGGGAAC AAAACTGCAC TTACCGGAGG 210 CAGTGGAAAG GTTGTAGATA GTGGTCCAAA TGATCATATC TTCATCTTTT ATAGTGATCA 123018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGGAAAG GTTGTAGATA GTGGTCCAAA TGATCATATC TTCATCTTTT ATAGTGATCA 270 TGGAGGTGCT GGAGTGCTTG GTGAGTAGCT TCATTATACT TGATCCTTTT CTGTTCATGT 122958 |||||||||| |||||||||| TGGAGGTGCT GGAGTGCTTG .......... .......... .......... .......... 290 ATCCTCTATG CCCATATTTA GTAATGATGT TTTTATAGTG CTAGAAAATG ATGTTTACTG 122898 .......... .......... .......... .......... .......... .......... 290 GTTCTTGTTC TTTTAGACAA ACAGGACGTA AATTGGTTAT GCATCTAACT GTTATCTGTT 122838 .......... .......... .......... .......... .......... .......... 290 GAATATCAAC AGTTCTTCAA AATTCTGTTT GCACGGAAAA AGTTTGGGAA AATCCTATTG 122778 .......... .......... .......... .......... .......... .......... 290 GTATTGAAAA AAAGGGCACT CGACTTACTA ATTGTGTCAA TAGGGCAATT AGTAGTTTCT 122718 .......... .......... .......... .......... .......... .......... 290 TGATTTTATC ATAGACATTA TTTTTCTAGG ATTCACAATT ACTATCTACA AGCATATACC 122658 .......... .......... .......... .......... .......... .......... 290 TTCCTCGAGC GGAACCTATT CATTTTAATT GTTAAACAGT ATTCCCAAGG TTAATATGCC 122598 .......... .......... .......... .......... .......... .......... 290 ATCCTAATTA ACAATAACAT GTTTGAATTT TTTGATTATG ATATAGGCTG CTATACTCCA 122538 .......... .......... .......... .......... .......... .......... 290 CAAGAAATCA CTAGCTAAGT TAATTCAGAA TCTGTCTCAT TTTAATGGTT TTATTATGTC 122478 .......... .......... .......... .......... .......... .......... 290 TCTTATGAAC AATCTTCTCT TTTGATCTTT CAAGTTTTGA GCAATCACTG TTGTATGTGA 122418 .......... .......... .......... .......... .......... .......... 290 AGTTCTATCA TTTGTTTGGA TCATGGGTGA GTTGGTTATT CTGGGGATGA ATATAATGAG 122358 .......... .......... .......... .......... .......... .......... 290 ACAGGACATG TTTTGTTGGA TCAAAGTGTT GAAGGCTTGC TGTGTCAATT ATATTTTGCA 122298 .......... .......... .......... .......... .......... .......... 290 TTTGATGGGC TTTTTAAATT GCATGAAGAA TAATTTATAG TTCCTTCACT TCATATACTA 122238 .......... .......... .......... .......... .......... .......... 290 ATAATAGTGT CATGTCTTCT AGGAATGCCT ACCAATCCTT ACCTCTATGC AAATGATCTG 122178 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GAATGCCT ACCAATCCTT ACCTCTATGC AAATGATCTG 328 ATTGATGCTC TGAAAATGAA GCATGCTTCG GGAACATACA AAAGCTTGGT GAGCTGAGCT 122118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATTGATGCTC TGAAAATGAA GCATGCTTCG GGAACATACA AAAGCTTG.. .......... 376 TTAATATTTC CTGCAGACTT GTGCTGCTAT AGGTTGTTTG AGTCCCTTTT CCATTCTATG 122058 .......... .......... .......... .......... .......... .......... 376 AGTTATTTAT TGTTCTCTAT TTACAGGTAT TTTACCTTGA AGCTTGTGAG TCTGGAAGTA 121998 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTAT TTTACCTTGA AGCTTGTGAG TCTGGAAGTA 410 TGTTTGAGGG TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACAACAGCA TCAAATGCTG 121938 |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| TGTTTGAGGG TCTTCTTCCT GAAGGTTTAA ACATCTATGC CACATCAGCC TCAAATGCTG 470 ATGAGAGCAG CTGGGGAACC TATTGCCCAG GGGAGTACCC TAGTCCTCCT ATCGAATATG 121878 |||||||||| |||| ||||| ||||||||| |||||||||| ||||||| || |||||||||| ATGAGAGCAG CTGGCGAACC TATTGCCCAT GGGAGTACCC TAGTCCTTCT ATCGAATATG 530 ACACCTGCCT GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAG 121832 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACACCTGCCT GGGTGACTTG TATAGTATTT CCTGGATGGA GGACAG 576 hqPGS_C08HBa0197A05.1-_SGN-E299630+ (123437 123305,123154 122998,122215 122130,122031 121832) ******************************************************************************** EST sequence 77 +strand 521 n (File: SGN-E276780+) 1 AAAGATGAGA ACATTGTTGT GTTCATGTAT GATGACATTG CAAACAATGA AGAGAACCCA 61 AGGCAAGGAG TTATCATTAA TAGCCCTCAT GGTGAGGATG TTTACAACGG AGTACCTAAG 121 GATTACACGG GGGATGATGT TACTGTTGAC AACTTTCTTG CTGCTCTCCT TGGGAACAAA 181 ACTGCACTTA CCGGAGGCAG TGGAAAGGTT GTAGATAGTG GTCCAAATGA TCATATCTTC 241 ATCTTTTATA GTGATCATGG AGGTGCTGGA GTGCTTGGAA TGCCTACCAA TCCTTACCTC 301 TATGCAAATG ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC 361 TTGGTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT TTGAGGGTCT TCTTCCTGAA 421 GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG AGAGCAGCTG GGGAACCTAT 481 TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA C Predicted gene structure (within gDNA segment 124024 to 121264): Exon 1 123424 123305 ( 120 n); cDNA 1 120 ( 120 n); score: 1.000 Intron 1 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 123154 122998 ( 157 n); cDNA 121 277 ( 157 n); score: 1.000 Intron 2 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 3 122215 122130 ( 86 n); cDNA 278 363 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 122031 121874 ( 158 n); cDNA 364 521 ( 158 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E276780+ 1.000 521 1.000 C PGS_C08HBa0197A05.1-_SGN-E276780+ (123424 123305,123154 122998,122215 122130,122031 121874) Alignment (genomic DNA sequence = upper lines): AAAGATGAGA ACATTGTTGT GTTCATGTAT GATGACATTG CAAACAATGA AGAGAACCCA 123365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATGAGA ACATTGTTGT GTTCATGTAT GATGACATTG CAAACAATGA AGAGAACCCA 60 AGGCAAGGAG TTATCATTAA TAGCCCTCAT GGTGAGGATG TTTACAACGG AGTACCTAAG 123305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAAGGAG TTATCATTAA TAGCCCTCAT GGTGAGGATG TTTACAACGG AGTACCTAAG 120 GTAAGTTTGT TTCCGTAAAT TTTACATTTA CCTAGTAATA AGTAAAACTG TTTCTGATAT 123245 .......... .......... .......... .......... .......... .......... 120 TGTCTCTTGA GGCAGGATTA CATGGGGGAT GATGTTACTG TTTTACATTT ACCTAGTAAT 123185 .......... .......... .......... .......... .......... .......... 120 AACAGTTTCT GATATTGTCT CTTGAGGCAG GATTACACGG GGGATGATGT TACTGTTGAC 123125 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATTACACGG GGGATGATGT TACTGTTGAC 150 AACTTTCTTG CTGCTCTCCT TGGGAACAAA ACTGCACTTA CCGGAGGCAG TGGAAAGGTT 123065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCTTG CTGCTCTCCT TGGGAACAAA ACTGCACTTA CCGGAGGCAG TGGAAAGGTT 210 GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG AGGTGCTGGA 123005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGATAGTG GTCCAAATGA TCATATCTTC ATCTTTTATA GTGATCATGG AGGTGCTGGA 270 GTGCTTGGTG AGTAGCTTCA TTATACTTGA TCCTTTTCTG TTCATGTATC CTCTATGCCC 122945 ||||||| GTGCTTG... .......... .......... .......... .......... .......... 277 ATATTTAGTA ATGATGTTTT TATAGTGCTA GAAAATGATG TTTACTGGTT CTTGTTCTTT 122885 .......... .......... .......... .......... .......... .......... 277 TAGACAAACA GGACGTAAAT TGGTTATGCA TCTAACTGTT ATCTGTTGAA TATCAACAGT 122825 .......... .......... .......... .......... .......... .......... 277 TCTTCAAAAT TCTGTTTGCA CGGAAAAAGT TTGGGAAAAT CCTATTGGTA TTGAAAAAAA 122765 .......... .......... .......... .......... .......... .......... 277 GGGCACTCGA CTTACTAATT GTGTCAATAG GGCAATTAGT AGTTTCTTGA TTTTATCATA 122705 .......... .......... .......... .......... .......... .......... 277 GACATTATTT TTCTAGGATT CACAATTACT ATCTACAAGC ATATACCTTC CTCGAGCGGA 122645 .......... .......... .......... .......... .......... .......... 277 ACCTATTCAT TTTAATTGTT AAACAGTATT CCCAAGGTTA ATATGCCATC CTAATTAACA 122585 .......... .......... .......... .......... .......... .......... 277 ATAACATGTT TGAATTTTTT GATTATGATA TAGGCTGCTA TACTCCACAA GAAATCACTA 122525 .......... .......... .......... .......... .......... .......... 277 GCTAAGTTAA TTCAGAATCT GTCTCATTTT AATGGTTTTA TTATGTCTCT TATGAACAAT 122465 .......... .......... .......... .......... .......... .......... 277 CTTCTCTTTT GATCTTTCAA GTTTTGAGCA ATCACTGTTG TATGTGAAGT TCTATCATTT 122405 .......... .......... .......... .......... .......... .......... 277 GTTTGGATCA TGGGTGAGTT GGTTATTCTG GGGATGAATA TAATGAGACA GGACATGTTT 122345 .......... .......... .......... .......... .......... .......... 277 TGTTGGATCA AAGTGTTGAA GGCTTGCTGT GTCAATTATA TTTTGCATTT GATGGGCTTT 122285 .......... .......... .......... .......... .......... .......... 277 TTAAATTGCA TGAAGAATAA TTTATAGTTC CTTCACTTCA TATACTAATA ATAGTGTCAT 122225 .......... .......... .......... .......... .......... .......... 277 GTCTTCTAGG AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT GATGCTCTGA 122165 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AATGCCTACC AATCCTTACC TCTATGCAAA TGATCTGATT GATGCTCTGA 328 AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTGGTGAG CTGAGCTTTA ATATTTCCTG 122105 |||||||||| |||||||||| |||||||||| ||||| AAATGAAGCA TGCTTCGGGA ACATACAAAA GCTTG..... .......... .......... 363 CAGACTTGTG CTGCTATAGG TTGTTTGAGT CCCTTTTCCA TTCTATGAGT TATTTATTGT 122045 .......... .......... .......... .......... .......... .......... 363 TCTCTATTTA CAGGTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT TTGAGGGTCT 121985 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTATTTT ACCTTGAAGC TTGTGAGTCT GGAAGTATGT TTGAGGGTCT 410 TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG AGAGCAGCTG 121925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCCTGAA GGTTTAAACA TCTATGCCAC AACAGCATCA AATGCTGATG AGAGCAGCTG 470 GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA C 121874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GGGAACCTAT TGCCCAGGGG AGTACCCTAG TCCTCCTATC GAATATGACA C 521 hqPGS_C08HBa0197A05.1-_SGN-E276780+ (123424 123305,123154 122998,122215 122130,122031 121874) ******************************************************************************** EST sequence 100 +strand 687 n (File: SGN-E346003+) 1 GTTCACGTCG CCGGAGTTTT CCTCCTCGTC GGAATCGCCG TGCTTGCCGC CGTCGAAGGA 61 CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACGC AGATGACTCT 121 GTTGGAACCA GATGGGCCGT CCTTCTCGCC GGATCAAATG GTTATTGGAA TTATAGACAT 181 CAGGCTGATG TATGCCATGC GTATCAGCTA TTGAGAAAAG GTGGTCTCAA AGATGAAAAT 241 ATTATTGTCT TCATGTATGA TGACATTGCT CACCATGAAG AGAACCCAAG ACCAGGAGTT 301 ATTATTAATA GTCCTGCCGG TGAGGATGTT TACGAAGGAG TTCCTAAGGA TTACACGGGA 361 GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 421 GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 481 GATCATGGTG GCCCTGGCGT GCTTGGGATG CCTACCAATC CTTATCTATA TGCCGATGAT 541 CNTAATTGCT GTGTTGAAAA AGAAGCATGC CGCTGGGACA TATAAAAGCT TGGTATTGTA 601 CATTGAAGCT TGCGAGTCTG GAAGTATATT TGAGGGACTT CTTCCTAATG GTCTAAATAT 661 TTATGCCACA ACAGCTTCAA ATGCTGA Predicted gene structure (within gDNA segment 126223 to 118783): Exon 1 125062 124937 ( 126 n); cDNA 61 183 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 184 348 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 122998 ( 157 n); cDNA 349 505 ( 157 n); score: 0.860 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.74) Exon 4 122215 122130 ( 86 n); cDNA 506 592 ( 87 n); score: 0.785 Intron 4 122129 122032 ( 98 n); Pd: 0.885 (s: 0.78), Pa: 0.996 (s: 0.90) Exon 5 122031 121937 ( 95 n); cDNA 593 687 ( 95 n); score: 0.884 MATCH C08HBa0197A05.1- SGN-E346003+ 0.840 629 0.916 C PGS_C08HBa0197A05.1-_SGN-E346003+ (125062 124937,123469 123305,123154 122998,122215 122130,122031 121937) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 117 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 177 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 183 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 183 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 183 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 183 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 183 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 183 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 183 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 183 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 183 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 183 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 183 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 183 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 183 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 183 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 183 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 183 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 183 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 183 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 183 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 183 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 183 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 183 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 183 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 183 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 210 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 270 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 330 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 348 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 348 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 360 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 420 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT 123023 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || |||||| GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 480 GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC CTTTTCTGTT 122963 |||||||| | | |||| || ||||| GATCATGGTG GCCCTGGCGT GCTTG..... .......... .......... .......... 505 CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA AAATGATGTT 122903 .......... .......... .......... .......... .......... .......... 505 TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC TAACTGTTAT 122843 .......... .......... .......... .......... .......... .......... 505 CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT GGGAAAATCC 122783 .......... .......... .......... .......... .......... .......... 505 TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG CAATTAGTAG 122723 .......... .......... .......... .......... .......... .......... 505 TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT CTACAAGCAT 122663 .......... .......... .......... .......... .......... .......... 505 ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC CAAGGTTAAT 122603 .......... .......... .......... .......... .......... .......... 505 ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA GGCTGCTATA 122543 .......... .......... .......... .......... .......... .......... 505 CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA TGGTTTTATT 122483 .......... .......... .......... .......... .......... .......... 505 ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT CACTGTTGTA 122423 .......... .......... .......... .......... .......... .......... 505 TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG GATGAATATA 122363 .......... .......... .......... .......... .......... .......... 505 ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT CAATTATATT 122303 .......... .......... .......... .......... .......... .......... 505 TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT TCACTTCATA 122243 .......... .......... .......... .......... .......... .......... 505 TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG 122183 | | |||||||||| |||||| || ||||| ||| .......... .......... .......GGA TGCCTACCAA TCCTTATCTA TATGCCGATG 538 ATC-TGATTG ATGCTCTGAA AATGAAGCAT GCTTCGGGAA CATACAAAAG CTTGGTGAGC 122124 ||| | |||| || |||| || ||||||| || | || | |||| ||||| |||| ATCNTAATTG CTGTGTTGAA AAAGAAGCAT GCCGCTGGGA CATATAAAAG CTTG...... 592 TGAGCTTTAA TATTTCCTGC AGACTTGTGC TGCTATAGGT TGTTTGAGTC CCTTTTCCAT 122064 .......... .......... .......... .......... .......... .......... 592 TCTATGAGTT ATTTATTGTT CTCTATTTAC AGGTATTTTA CCTTGAAGCT TGTGAGTCTG 122004 ||||| || | |||||||| || ||||||| .......... .......... .......... ..GTATTGTA CATTGAAGCT TGCGAGTCTG 620 GAAGTATGTT TGAGGGTCTT CTTCCTGAAG GTTTAAACAT CTATGCCACA ACAGCATCAA 121944 ||||||| || |||||| ||| |||||| | | || |||| || ||||||||| ||||| |||| GAAGTATATT TGAGGGACTT CTTCCTAATG GTCTAAATAT TTATGCCACA ACAGCTTCAA 680 ATGCTGA 121937 ||||||| ATGCTGA 687 hqPGS_C08HBa0197A05.1-_SGN-E346003+ (125062 124937,123469 123305,123154 122998,122215 122130,122031 121937) ******************************************************************************** EST sequence 46 +strand 653 n (File: SGN-E346138+) 1 GATAATAATG GTTCACGTCG CCGGAGTTTT CATCCTCGTC GGAATCGCCG TGCTTGCCGC 61 CGTCGAAGGA CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACGC 121 AGATGACTCT GTTGGAACCA GATGGGCCGT CCTTCTCGCC GGATCAAATG GTTATTGGAA 181 TTATAGACAT CAGGCTGATG TATGCCATGC GTATCAGCTA TTGAGAAAAG GTGGTCTCAA 241 AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT CACCATGAAG AGAACCCAAG 301 ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT TACGAAGGAG TTCCTAAGGA 361 TTACACGGGA GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC 421 TGCTCTTACT GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT 481 ATTCTATAGT GATCATGGTG GCCCTGGCGT GCTTGGGATG CCTACCAATC CTTATCTATA 541 TGCCGATGAT CTAATTGCTG TGTTGAAAAA GAAGCATGCC GCTGGGACAT ATAAAAGCTT 601 GGTATTGTAC ATTGAAGCTT GCGAGTCTGG AAGTATATTT GAGGGACTTC TTC Predicted gene structure (within gDNA segment 126323 to 119223): Exon 1 125062 124937 ( 126 n); cDNA 71 193 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 194 358 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 122998 ( 157 n); cDNA 359 515 ( 157 n); score: 0.860 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.80) Exon 4 122215 122130 ( 86 n); cDNA 516 601 ( 86 n); score: 0.814 Intron 4 122129 122032 ( 98 n); Pd: 0.885 (s: 0.78), Pa: 0.996 (s: 0.90) Exon 5 122031 121980 ( 52 n); cDNA 602 653 ( 52 n); score: 0.904 MATCH C08HBa0197A05.1- SGN-E346138+ 0.843 586 0.897 C PGS_C08HBa0197A05.1-_SGN-E346138+ (125062 124937,123469 123305,123154 122998,122215 122130,122031 121980) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 127 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 187 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 193 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 193 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 193 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 193 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 193 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 193 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 193 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 193 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 193 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 193 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 193 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 193 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 193 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 193 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 193 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 193 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 193 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 193 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 193 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 193 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 193 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 193 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 193 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 193 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 220 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 280 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 340 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 358 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 358 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 370 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 430 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT 123023 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || |||||| GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 490 GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC CTTTTCTGTT 122963 |||||||| | | |||| || ||||| GATCATGGTG GCCCTGGCGT GCTTG..... .......... .......... .......... 515 CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA AAATGATGTT 122903 .......... .......... .......... .......... .......... .......... 515 TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC TAACTGTTAT 122843 .......... .......... .......... .......... .......... .......... 515 CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT GGGAAAATCC 122783 .......... .......... .......... .......... .......... .......... 515 TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG CAATTAGTAG 122723 .......... .......... .......... .......... .......... .......... 515 TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT CTACAAGCAT 122663 .......... .......... .......... .......... .......... .......... 515 ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC CAAGGTTAAT 122603 .......... .......... .......... .......... .......... .......... 515 ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA GGCTGCTATA 122543 .......... .......... .......... .......... .......... .......... 515 CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA TGGTTTTATT 122483 .......... .......... .......... .......... .......... .......... 515 ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT CACTGTTGTA 122423 .......... .......... .......... .......... .......... .......... 515 TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG GATGAATATA 122363 .......... .......... .......... .......... .......... .......... 515 ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT CAATTATATT 122303 .......... .......... .......... .......... .......... .......... 515 TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT TCACTTCATA 122243 .......... .......... .......... .......... .......... .......... 515 TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG 122183 | | |||||||||| |||||| || ||||| ||| .......... .......... .......GGA TGCCTACCAA TCCTTATCTA TATGCCGATG 548 ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC TTGGTGAGCT 122123 |||| |||| || ||||| | |||||||| | | || || ||| |||||| ||| ATCTAATTGC TGTGTTGAAA AAGAAGCATG CCGCTGGGAC ATATAAAAGC TTG....... 601 GAGCTTTAAT ATTTCCTGCA GACTTGTGCT GCTATAGGTT GTTTGAGTCC CTTTTCCATT 122063 .......... .......... .......... .......... .......... .......... 601 CTATGAGTTA TTTATTGTTC TCTATTTACA GGTATTTTAC CTTGAAGCTT GTGAGTCTGG 122003 ||||| ||| ||||||||| | |||||||| .......... .......... .......... .GTATTGTAC ATTGAAGCTT GCGAGTCTGG 630 AAGTATGTTT GAGGGTCTTC TTC 121980 |||||| ||| ||||| |||| ||| AAGTATATTT GAGGGACTTC TTC 653 hqPGS_C08HBa0197A05.1-_SGN-E346138+ (125062 124937,123469 123305,123154 122998,122215 122130,122031 121980) ******************************************************************************** EST sequence 75 +strand 613 n (File: SGN-E321047+) 1 GATAATGAAT CGTTCCGTCG CCGGAGTTTT GTTCCTGATT GCGCTCTCGT TAAACGTCTC 61 CGTTTCCGAG AGCCGTAATT TTTTGAAACT TCCGTCTGAA GGTTCTAGAT TCTTCGATGC 121 CGATGAGATC GACTCCGTCG GTACTAGATG GGCTATTTTG CTTGCCGGAT CAAACGGTTA 181 TTGGAATTAC CGTCACCAGG CTGATATATG TCATGCATAT CAACTGTTGA AGAAGGGTGG 241 TCTCAAAGAT GAGAACATTG TTGTGTTCAT GTATGATGAC ATTGCAAACA ATGAAGAGAA 301 CCCAAGGCAA GGAGTTATCA TTAATAGCCC TCATGGTGAG GATGTTTACA ACGGAGTACC 361 TAAGGATTAC ACGGGGGATG ATGTTACTGT TGACAACTTT CTTGCTGCTC TCCTTGGGAA 421 CAAAACTGCA CTTACCGGAG GCAGTGGAAA GGTTGTAGAT AGTGGTCCAA ATGATCATAT 481 CTTCATCTTT TATAGTGATC ATGGAGGTGC TGGAGTGCTT GGAATGCCTA CCAATCCTTA 541 CCTCTATGCA AATGATCTGA TTGATGCTCT GAAAATGAAG CATGCTTCGG GAACATACAA 601 AAGCTTGGTA TTT Predicted gene structure (within gDNA segment 125735 to 121478): Exon 1 125135 124937 ( 199 n); cDNA 1 199 ( 199 n); score: 1.000 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 200 364 ( 165 n); score: 1.000 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 123154 122998 ( 157 n); cDNA 365 521 ( 157 n); score: 1.000 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 4 122215 122130 ( 86 n); cDNA 522 607 ( 86 n); score: 1.000 Intron 4 122129 122032 ( 98 n); Pd: 0.885 (s: 1.00), Pa: 0.996 (s: 0) Exon 5 122031 122026 ( 6 n); cDNA 608 613 ( 6 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E321047+ 1.000 613 1.000 C PGS_C08HBa0197A05.1-_SGN-E321047+ (125135 124937,123469 123305,123154 122998,122215 122130,122031 122026) Alignment (genomic DNA sequence = upper lines): GATAATGAAT CGTTCCGTCG CCGGAGTTTT GTTCCTGATT GCGCTCTCGT TAAACGTCTC 125076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAATGAAT CGTTCCGTCG CCGGAGTTTT GTTCCTGATT GCGCTCTCGT TAAACGTCTC 60 CGTTTCCGAG AGCCGTAATT TTTTGAAACT TCCGTCTGAA GGTTCTAGAT TCTTCGATGC 125016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTTCCGAG AGCCGTAATT TTTTGAAACT TCCGTCTGAA GGTTCTAGAT TCTTCGATGC 120 CGATGAGATC GACTCCGTCG GTACTAGATG GGCTATTTTG CTTGCCGGAT CAAACGGTTA 124956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATGAGATC GACTCCGTCG GTACTAGATG GGCTATTTTG CTTGCCGGAT CAAACGGTTA 180 TTGGAATTAC CGTCACCAGG TGATTATACG ATTTATTTGC TATTGTTTTT TTTTTACTTT 124896 |||||||||| ||||||||| TTGGAATTAC CGTCACCAG. .......... .......... .......... .......... 199 AAATATTTTA CTTTTGAAGC GTTTTTTTTG TTTGTTTGTG ATGGTTGATG GAGGTTAATA 124836 .......... .......... .......... .......... .......... .......... 199 TAAGTTGATT GAATATATGT TTAATGTTTT TTCACCCTTA TGATGAGTGG TTCAAGTGTC 124776 .......... .......... .......... .......... .......... .......... 199 AAATTAGTGG GAACGGAGCT ACTGTATAGT TTATTACAGC TTCCATTGAC TTTAGTATAT 124716 .......... .......... .......... .......... .......... .......... 199 GCTTTTGTGA GCTAATAAGA AACTATATAA TATATACTTA AATATGTCAC CATTTCTTGT 124656 .......... .......... .......... .......... .......... .......... 199 CATTTGATAT GGATTTTTTT TTTGAAATAA AATTGAAATT TGACTAGTCT GAATTTCCAC 124596 .......... .......... .......... .......... .......... .......... 199 CAACCTCTGT TTAAGGAAGA ACAACACTTT TGATATGGAT TTGTCAAACC TATGGAGAAA 124536 .......... .......... .......... .......... .......... .......... 199 AATTTATCAC TTACTCCGTT TCACGAAGAA TAGTAGTTTA ACTGATTTGG AATTTAAAAA 124476 .......... .......... .......... .......... .......... .......... 199 ATAAAAAATG ACTTTTGATC CTGTAGTGTT AAATTAAAAT TATGTCAAAT GTACAAAATT 124416 .......... .......... .......... .......... .......... .......... 199 ATTTTTTAAT CTTGTGGCCT TAAACATAGT ACATAGAAAG TTGTTACAAA AAAAAAAAAG 124356 .......... .......... .......... .......... .......... .......... 199 CCTTCAACAT GACATATGAA AAGTTATTAC AAAAAAAAAG GTCATTCTTT TAGAACCGGA 124296 .......... .......... .......... .......... .......... .......... 199 CTAAAAAAAG AGCTCATTCT TTTTGAAACC GAAGAAGTAT AAAGCTAGAG GGACTTAACT 124236 .......... .......... .......... .......... .......... .......... 199 ATCTTTTGTG AAGGATTTTA ATGAATCCCT TTTGAAAAAT TACGCTAGAG TAAACATTTG 124176 .......... .......... .......... .......... .......... .......... 199 TTGTTTCTGG ACTTTGGAGG GTATAAAGAT TGTGACTTAA CTGTACGGTG CTTGATAGAG 124116 .......... .......... .......... .......... .......... .......... 199 CTTAAACGTG TGTCATCCAA ATATTAGTTT GGATATGGTA AGAGCTAGGT TACTATTGAT 124056 .......... .......... .......... .......... .......... .......... 199 GACAGGCATA AGAGTCAAAC TTGCTAATTC TTAATTTATA ATCAATGAAT CACTTTGCTG 123996 .......... .......... .......... .......... .......... .......... 199 TTGTGTAACC TTTTCCTTAT TTGGGTTAAT TATAACATGT TAGTGGGGGA TGTTAATTGT 123936 .......... .......... .......... .......... .......... .......... 199 GGGGCTAACC ACGACAGTGC ATATTATCCA TTAGTATATT TGTCTCGATA TGATATACTC 123876 .......... .......... .......... .......... .......... .......... 199 ATTTTAGTAA GGACCAGTTT CAAGAAAGCT GGTGTGGGGT ATCCTGCCAC TGGTGTTAGT 123816 .......... .......... .......... .......... .......... .......... 199 TGATGTAATA CTATTCTGTG GTGTAACTTA GGGGTTCTTT TCTTGTTTCT GAGTTGCAAG 123756 .......... .......... .......... .......... .......... .......... 199 GTCTTTTACT TGTGTGACCT TGCCAATATA TATGTTAGAT GTGCGCGGAC ATAATAATAT 123696 .......... .......... .......... .......... .......... .......... 199 CTAACCGTAT TAAAGTACTA CTGCAAATAC TGGACATAAT GTTTAACATA TCAAGAAAGG 123636 .......... .......... .......... .......... .......... .......... 199 CTAGGTGTTG ATTCTAACTA GTTGGTTACA TATGTATGGA TCATTCCTTT TCGTTGTTTT 123576 .......... .......... .......... .......... .......... .......... 199 AATAAATTGA ATTCGAGATT GGCTAGAAAA AAAAAACTTC TCTTGATTAT GGGAATCCAC 123516 .......... .......... .......... .......... .......... .......... 199 ATGGTTATTT ATAGATTGTT AATATGTCCT GCTATCCTTG ACTCAGGCTG ATATATGTCA 123456 |||| |||||||||| .......... .......... .......... .......... ......GCTG ATATATGTCA 213 TGCATATCAA CTGTTGAAGA AGGGTGGTCT CAAAGATGAG AACATTGTTG TGTTCATGTA 123396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATATCAA CTGTTGAAGA AGGGTGGTCT CAAAGATGAG AACATTGTTG TGTTCATGTA 273 TGATGACATT GCAAACAATG AAGAGAACCC AAGGCAAGGA GTTATCATTA ATAGCCCTCA 123336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGACATT GCAAACAATG AAGAGAACCC AAGGCAAGGA GTTATCATTA ATAGCCCTCA 333 TGGTGAGGAT GTTTACAACG GAGTACCTAA GGTAAGTTTG TTTCCGTAAA TTTTACATTT 123276 |||||||||| |||||||||| |||||||||| | TGGTGAGGAT GTTTACAACG GAGTACCTAA G......... .......... .......... 364 ACCTAGTAAT AAGTAAAACT GTTTCTGATA TTGTCTCTTG AGGCAGGATT ACATGGGGGA 123216 .......... .......... .......... .......... .......... .......... 364 TGATGTTACT GTTTTACATT TACCTAGTAA TAACAGTTTC TGATATTGTC TCTTGAGGCA 123156 .......... .......... .......... .......... .......... .......... 364 GGATTACACG GGGGATGATG TTACTGTTGA CAACTTTCTT GCTGCTCTCC TTGGGAACAA 123096 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GATTACACG GGGGATGATG TTACTGTTGA CAACTTTCTT GCTGCTCTCC TTGGGAACAA 423 AACTGCACTT ACCGGAGGCA GTGGAAAGGT TGTAGATAGT GGTCCAAATG ATCATATCTT 123036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCACTT ACCGGAGGCA GTGGAAAGGT TGTAGATAGT GGTCCAAATG ATCATATCTT 483 CATCTTTTAT AGTGATCATG GAGGTGCTGG AGTGCTTGGT GAGTAGCTTC ATTATACTTG 122976 |||||||||| |||||||||| |||||||||| |||||||| CATCTTTTAT AGTGATCATG GAGGTGCTGG AGTGCTTG.. .......... .......... 521 ATCCTTTTCT GTTCATGTAT CCTCTATGCC CATATTTAGT AATGATGTTT TTATAGTGCT 122916 .......... .......... .......... .......... .......... .......... 521 AGAAAATGAT GTTTACTGGT TCTTGTTCTT TTAGACAAAC AGGACGTAAA TTGGTTATGC 122856 .......... .......... .......... .......... .......... .......... 521 ATCTAACTGT TATCTGTTGA ATATCAACAG TTCTTCAAAA TTCTGTTTGC ACGGAAAAAG 122796 .......... .......... .......... .......... .......... .......... 521 TTTGGGAAAA TCCTATTGGT ATTGAAAAAA AGGGCACTCG ACTTACTAAT TGTGTCAATA 122736 .......... .......... .......... .......... .......... .......... 521 GGGCAATTAG TAGTTTCTTG ATTTTATCAT AGACATTATT TTTCTAGGAT TCACAATTAC 122676 .......... .......... .......... .......... .......... .......... 521 TATCTACAAG CATATACCTT CCTCGAGCGG AACCTATTCA TTTTAATTGT TAAACAGTAT 122616 .......... .......... .......... .......... .......... .......... 521 TCCCAAGGTT AATATGCCAT CCTAATTAAC AATAACATGT TTGAATTTTT TGATTATGAT 122556 .......... .......... .......... .......... .......... .......... 521 ATAGGCTGCT ATACTCCACA AGAAATCACT AGCTAAGTTA ATTCAGAATC TGTCTCATTT 122496 .......... .......... .......... .......... .......... .......... 521 TAATGGTTTT ATTATGTCTC TTATGAACAA TCTTCTCTTT TGATCTTTCA AGTTTTGAGC 122436 .......... .......... .......... .......... .......... .......... 521 AATCACTGTT GTATGTGAAG TTCTATCATT TGTTTGGATC ATGGGTGAGT TGGTTATTCT 122376 .......... .......... .......... .......... .......... .......... 521 GGGGATGAAT ATAATGAGAC AGGACATGTT TTGTTGGATC AAAGTGTTGA AGGCTTGCTG 122316 .......... .......... .......... .......... .......... .......... 521 TGTCAATTAT ATTTTGCATT TGATGGGCTT TTTAAATTGC ATGAAGAATA ATTTATAGTT 122256 .......... .......... .......... .......... .......... .......... 521 CCTTCACTTC ATATACTAAT AATAGTGTCA TGTCTTCTAG GAATGCCTAC CAATCCTTAC 122196 |||||||||| |||||||||| .......... .......... .......... .......... GAATGCCTAC CAATCCTTAC 541 CTCTATGCAA ATGATCTGAT TGATGCTCTG AAAATGAAGC ATGCTTCGGG AACATACAAA 122136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATGCAA ATGATCTGAT TGATGCTCTG AAAATGAAGC ATGCTTCGGG AACATACAAA 601 AGCTTGGTGA GCTGAGCTTT AATATTTCCT GCAGACTTGT GCTGCTATAG GTTGTTTGAG 122076 |||||| AGCTTG.... .......... .......... .......... .......... .......... 607 TCCCTTTTCC ATTCTATGAG TTATTTATTG TTCTCTATTT ACAGGTATTT 122026 |||||| .......... .......... .......... .......... ....GTATTT 613 hqPGS_C08HBa0197A05.1-_SGN-E321047+ (125135 124937,123469 123305,123154 122998,122215 122130,122031 122026) ******************************************************************************** EST sequence 81 +strand 605 n (File: SGN-E309925+) 1 CGATAATAAT GGTTCACGTC GCCGGAGTTT TCATCCTCGT CGGAATCGCC GTGCTTGCCG 61 CCGTCGAAGG ACGTAATGTT TTGAAACTTC CGTCGGAAGC TTCCAGATTC TTCGATGACG 121 CAGATGACTC TGTTGGAACC AGATGGGCCG TCCTTCTCGC CGGATCAAAT GGTTATTGGA 181 ATTATAGACA TCAGGCTGAT GTATGCCATG CGTATCAGCT ATTGAGAAAA GGTGGTCTCA 241 AAGATGAAAA TATTATTGTC TTCATGTATG ATGACATTGC TCACCATGAA GAGAACCCAA 301 GACCAGGAGT TATTATTAAT AGTCCTGCCG GTGAGGATGT TTACGAAGGA GTTCCTAAGG 361 ATTACACGGG AGATGATGTT AATGTGCACA ACTTTTTAGC TGTTCTCCTT GGTAACAAAA 421 CTGCTCTTAC TGGAGGTAGC GGAAAGGTGG TGAATAGTGG TCCAAATGAT CATATTTTCA 481 TATTCTATAG TGATCATGGT GGCCCTGGCG TGCTTGGGAT GCCTACCAAT CCTTATCTAT 541 ATGCCGATGA TCTAATTGCT GTGTTGAAAA AGAAGCATGC CGCTGGGACA TATAAAAGCT 601 TGGTA Predicted gene structure (within gDNA segment 126333 to 119713): Exon 1 125062 124937 ( 126 n); cDNA 72 194 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 195 359 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 122998 ( 157 n); cDNA 360 516 ( 157 n); score: 0.860 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.80) Exon 4 122215 122130 ( 86 n); cDNA 517 602 ( 86 n); score: 0.814 MATCH C08HBa0197A05.1- SGN-E309925+ 0.837 534 0.883 C PGS_C08HBa0197A05.1-_SGN-E309925+ (125062 124937,123469 123305,123154 122998,122215 122130) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 128 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 188 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 194 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 194 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 194 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 194 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 194 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 194 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 194 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 194 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 194 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 194 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 194 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 194 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 194 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 194 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 194 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 194 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 194 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 194 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 194 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 194 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 194 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 194 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 194 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 194 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 221 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 281 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 341 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 359 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 359 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 371 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 431 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT 123023 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || |||||| GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 491 GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC CTTTTCTGTT 122963 |||||||| | | |||| || ||||| GATCATGGTG GCCCTGGCGT GCTTG..... .......... .......... .......... 516 CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA AAATGATGTT 122903 .......... .......... .......... .......... .......... .......... 516 TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC TAACTGTTAT 122843 .......... .......... .......... .......... .......... .......... 516 CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT GGGAAAATCC 122783 .......... .......... .......... .......... .......... .......... 516 TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG CAATTAGTAG 122723 .......... .......... .......... .......... .......... .......... 516 TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT CTACAAGCAT 122663 .......... .......... .......... .......... .......... .......... 516 ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC CAAGGTTAAT 122603 .......... .......... .......... .......... .......... .......... 516 ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA GGCTGCTATA 122543 .......... .......... .......... .......... .......... .......... 516 CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA TGGTTTTATT 122483 .......... .......... .......... .......... .......... .......... 516 ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT CACTGTTGTA 122423 .......... .......... .......... .......... .......... .......... 516 TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG GATGAATATA 122363 .......... .......... .......... .......... .......... .......... 516 ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT CAATTATATT 122303 .......... .......... .......... .......... .......... .......... 516 TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT TCACTTCATA 122243 .......... .......... .......... .......... .......... .......... 516 TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG 122183 | | |||||||||| |||||| || ||||| ||| .......... .......... .......GGA TGCCTACCAA TCCTTATCTA TATGCCGATG 549 ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC ATACAAAAGC TTG 122130 |||| |||| || ||||| | |||||||| | | || || ||| |||||| ||| ATCTAATTGC TGTGTTGAAA AAGAAGCATG CCGCTGGGAC ATATAAAAGC TTG 602 hqPGS_C08HBa0197A05.1-_SGN-E309925+ (125062 124937,123469 123305,123154 122998,122215 122130) ******************************************************************************** EST sequence 91 +strand 578 n (File: SGN-E245817+) 1 TCACGTCGCC GGAGTTTTCA TCCTCGTCGG AATCGCCGTG CTTGCCGCCG TCGAAGGACG 61 TAATGTTTTG AAACTTCCGT CGGAAGCTTC CAGATTCTTC GATGACGCAG ATGACTCTGT 121 TGGAACCAGA TGGGCCGTCC TTCTCGCCGG ATCAAATGGT TATTGGAATT ATAGACATCA 181 GGCTGATGTA TGCCATGCGT ATCAGCTATT GAGAAAAGGT GGTCTCAAAG ATGAAAATAT 241 TATTGTCTTC ATGTATGATG ACATTGCTCA CCATGAAGAG AACCCAAGAC CAGGAGTTAT 301 TATTAATAGT CCTGCCGGTG AGGATGTTTA CGAAGGAGTT CCTAAGGATT ACACGGGAGA 361 TGATGTTAAT GTGCACAACT TTTTAGCTGT TCTCCTTGGT AACAAAACTG CTCTTACTGG 421 AGGTAGCGGA AAGGTGGTGA ATAGTGGTCC AAATGATCAT ATTTTCATAT TCTATAGTGA 481 TCATGGTGGC CCTGGCGTGC TTGGGATGCC TACCAATCCT TATCTATATG CCGATGATCT 541 AATTGCTGTG TTGAAAAAGA AGCATGCCGC TGGGACAT Predicted gene structure (within gDNA segment 126203 to 119853): Exon 1 125062 124937 ( 126 n); cDNA 59 181 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 182 346 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 122998 ( 157 n); cDNA 347 503 ( 157 n); score: 0.860 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.80) Exon 4 122215 122141 ( 75 n); cDNA 504 578 ( 75 n); score: 0.800 MATCH C08HBa0197A05.1- SGN-E245817+ 0.836 523 0.905 C PGS_C08HBa0197A05.1-_SGN-E245817+ (125062 124937,123469 123305,123154 122998,122215 122141) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 115 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 175 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 181 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 181 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 181 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 181 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 181 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 181 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 181 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 181 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 181 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 181 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 181 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 181 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 181 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 181 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 181 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 181 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 181 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 181 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 181 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 181 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 181 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 181 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 181 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 181 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 208 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 268 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 328 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 346 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 346 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 358 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 418 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT 123023 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || |||||| GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 478 GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC CTTTTCTGTT 122963 |||||||| | | |||| || ||||| GATCATGGTG GCCCTGGCGT GCTTG..... .......... .......... .......... 503 CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA AAATGATGTT 122903 .......... .......... .......... .......... .......... .......... 503 TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC TAACTGTTAT 122843 .......... .......... .......... .......... .......... .......... 503 CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT GGGAAAATCC 122783 .......... .......... .......... .......... .......... .......... 503 TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG CAATTAGTAG 122723 .......... .......... .......... .......... .......... .......... 503 TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT CTACAAGCAT 122663 .......... .......... .......... .......... .......... .......... 503 ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC CAAGGTTAAT 122603 .......... .......... .......... .......... .......... .......... 503 ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA GGCTGCTATA 122543 .......... .......... .......... .......... .......... .......... 503 CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA TGGTTTTATT 122483 .......... .......... .......... .......... .......... .......... 503 ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT CACTGTTGTA 122423 .......... .......... .......... .......... .......... .......... 503 TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG GATGAATATA 122363 .......... .......... .......... .......... .......... .......... 503 ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT CAATTATATT 122303 .......... .......... .......... .......... .......... .......... 503 TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT TCACTTCATA 122243 .......... .......... .......... .......... .......... .......... 503 TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG 122183 | | |||||||||| |||||| || ||||| ||| .......... .......... .......GGA TGCCTACCAA TCCTTATCTA TATGCCGATG 536 ATCTGATTGA TGCTCTGAAA ATGAAGCATG CTTCGGGAAC AT 122141 |||| |||| || ||||| | |||||||| | | || || || ATCTAATTGC TGTGTTGAAA AAGAAGCATG CCGCTGGGAC AT 578 hqPGS_C08HBa0197A05.1-_SGN-E245817+ (125062 124937,123469 123305,123154 122998,122215 122141) ******************************************************************************** EST sequence 42 +strand 581 n (File: SGN-E331426+) 1 TGAATCGTTC TTTCGCCGGA GTTTTGTTCC TGATTGCGCT GTCGTTAAAC GTGTCCGTTT 61 TCGAGAGCCG TAATTTTTTG AAACTTCCGT CTGAAGGTTC TAGATTCTTC GATGCCGATG 121 AGATCGACTC CGTCGGTACT AGATGGGCTA TTTTGCTTGC CGGATCAAAC GGTTATTGGA 181 ATTACCGTCA CCAGGCTGAT ATATGTCATG CATATCAACT GTTGAAGAAG GGTGGTCTCA 241 AAGATGAGAA CATTGTTGTG TTCATGTATG ATGACATTGC AAACAATGAA GAGAACCCAA 301 GGCAAGGAGT TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAGG 361 ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC TGCTCTCCTT GGGAACAAAA 421 CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG TCCAAATGAT CATATCTTCA 481 TCTTTTATAG TGATCATGGA GGTGCTGGAG TGCTTGGAAT GCCTACCAAT CCTTACCTCT 541 ATGCAAATGA TCTGATTGAT GCTCTGAAAA TGAAGCATGC T Predicted gene structure (within gDNA segment 126279 to 121541): Exon 1 125130 124937 ( 194 n); cDNA 1 194 ( 194 n); score: 0.974 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 195 359 ( 165 n); score: 1.000 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 123154 122998 ( 157 n); cDNA 360 516 ( 157 n); score: 1.000 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 1.00), Pa: 0.888 (s: 1.00) Exon 4 122215 122151 ( 65 n); cDNA 517 581 ( 65 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E331426+ 0.991 581 1.000 C PGS_C08HBa0197A05.1-_SGN-E331426+ (125130 124937,123469 123305,123154 122998,122215 122151) Alignment (genomic DNA sequence = upper lines): TGAATCGTTC CGTCGCCGGA GTTTTGTTCC TGATTGCGCT CTCGTTAAAC GTCTCCGTTT 125071 |||||||||| |||||||| |||||||||| |||||||||| ||||||||| || ||||||| TGAATCGTTC TTTCGCCGGA GTTTTGTTCC TGATTGCGCT GTCGTTAAAC GTGTCCGTTT 60 CCGAGAGCCG TAATTTTTTG AAACTTCCGT CTGAAGGTTC TAGATTCTTC GATGCCGATG 125011 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGAGCCG TAATTTTTTG AAACTTCCGT CTGAAGGTTC TAGATTCTTC GATGCCGATG 120 AGATCGACTC CGTCGGTACT AGATGGGCTA TTTTGCTTGC CGGATCAAAC GGTTATTGGA 124951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCGACTC CGTCGGTACT AGATGGGCTA TTTTGCTTGC CGGATCAAAC GGTTATTGGA 180 ATTACCGTCA CCAGGTGATT ATACGATTTA TTTGCTATTG TTTTTTTTTT ACTTTAAATA 124891 |||||||||| |||| ATTACCGTCA CCAG...... .......... .......... .......... .......... 194 TTTTACTTTT GAAGCGTTTT TTTTGTTTGT TTGTGATGGT TGATGGAGGT TAATATAAGT 124831 .......... .......... .......... .......... .......... .......... 194 TGATTGAATA TATGTTTAAT GTTTTTTCAC CCTTATGATG AGTGGTTCAA GTGTCAAATT 124771 .......... .......... .......... .......... .......... .......... 194 AGTGGGAACG GAGCTACTGT ATAGTTTATT ACAGCTTCCA TTGACTTTAG TATATGCTTT 124711 .......... .......... .......... .......... .......... .......... 194 TGTGAGCTAA TAAGAAACTA TATAATATAT ACTTAAATAT GTCACCATTT CTTGTCATTT 124651 .......... .......... .......... .......... .......... .......... 194 GATATGGATT TTTTTTTTGA AATAAAATTG AAATTTGACT AGTCTGAATT TCCACCAACC 124591 .......... .......... .......... .......... .......... .......... 194 TCTGTTTAAG GAAGAACAAC ACTTTTGATA TGGATTTGTC AAACCTATGG AGAAAAATTT 124531 .......... .......... .......... .......... .......... .......... 194 ATCACTTACT CCGTTTCACG AAGAATAGTA GTTTAACTGA TTTGGAATTT AAAAAATAAA 124471 .......... .......... .......... .......... .......... .......... 194 AAATGACTTT TGATCCTGTA GTGTTAAATT AAAATTATGT CAAATGTACA AAATTATTTT 124411 .......... .......... .......... .......... .......... .......... 194 TTAATCTTGT GGCCTTAAAC ATAGTACATA GAAAGTTGTT ACAAAAAAAA AAAAGCCTTC 124351 .......... .......... .......... .......... .......... .......... 194 AACATGACAT ATGAAAAGTT ATTACAAAAA AAAAGGTCAT TCTTTTAGAA CCGGACTAAA 124291 .......... .......... .......... .......... .......... .......... 194 AAAAGAGCTC ATTCTTTTTG AAACCGAAGA AGTATAAAGC TAGAGGGACT TAACTATCTT 124231 .......... .......... .......... .......... .......... .......... 194 TTGTGAAGGA TTTTAATGAA TCCCTTTTGA AAAATTACGC TAGAGTAAAC ATTTGTTGTT 124171 .......... .......... .......... .......... .......... .......... 194 TCTGGACTTT GGAGGGTATA AAGATTGTGA CTTAACTGTA CGGTGCTTGA TAGAGCTTAA 124111 .......... .......... .......... .......... .......... .......... 194 ACGTGTGTCA TCCAAATATT AGTTTGGATA TGGTAAGAGC TAGGTTACTA TTGATGACAG 124051 .......... .......... .......... .......... .......... .......... 194 GCATAAGAGT CAAACTTGCT AATTCTTAAT TTATAATCAA TGAATCACTT TGCTGTTGTG 123991 .......... .......... .......... .......... .......... .......... 194 TAACCTTTTC CTTATTTGGG TTAATTATAA CATGTTAGTG GGGGATGTTA ATTGTGGGGC 123931 .......... .......... .......... .......... .......... .......... 194 TAACCACGAC AGTGCATATT ATCCATTAGT ATATTTGTCT CGATATGATA TACTCATTTT 123871 .......... .......... .......... .......... .......... .......... 194 AGTAAGGACC AGTTTCAAGA AAGCTGGTGT GGGGTATCCT GCCACTGGTG TTAGTTGATG 123811 .......... .......... .......... .......... .......... .......... 194 TAATACTATT CTGTGGTGTA ACTTAGGGGT TCTTTTCTTG TTTCTGAGTT GCAAGGTCTT 123751 .......... .......... .......... .......... .......... .......... 194 TTACTTGTGT GACCTTGCCA ATATATATGT TAGATGTGCG CGGACATAAT AATATCTAAC 123691 .......... .......... .......... .......... .......... .......... 194 CGTATTAAAG TACTACTGCA AATACTGGAC ATAATGTTTA ACATATCAAG AAAGGCTAGG 123631 .......... .......... .......... .......... .......... .......... 194 TGTTGATTCT AACTAGTTGG TTACATATGT ATGGATCATT CCTTTTCGTT GTTTTAATAA 123571 .......... .......... .......... .......... .......... .......... 194 ATTGAATTCG AGATTGGCTA GAAAAAAAAA ACTTCTCTTG ATTATGGGAA TCCACATGGT 123511 .......... .......... .......... .......... .......... .......... 194 TATTTATAGA TTGTTAATAT GTCCTGCTAT CCTTGACTCA GGCTGATATA TGTCATGCAT 123451 ||||||||| |||||||||| .......... .......... .......... .......... .GCTGATATA TGTCATGCAT 213 ATCAACTGTT GAAGAAGGGT GGTCTCAAAG ATGAGAACAT TGTTGTGTTC ATGTATGATG 123391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTGTT GAAGAAGGGT GGTCTCAAAG ATGAGAACAT TGTTGTGTTC ATGTATGATG 273 ACATTGCAAA CAATGAAGAG AACCCAAGGC AAGGAGTTAT CATTAATAGC CCTCATGGTG 123331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGCAAA CAATGAAGAG AACCCAAGGC AAGGAGTTAT CATTAATAGC CCTCATGGTG 333 AGGATGTTTA CAACGGAGTA CCTAAGGTAA GTTTGTTTCC GTAAATTTTA CATTTACCTA 123271 |||||||||| |||||||||| |||||| AGGATGTTTA CAACGGAGTA CCTAAG.... .......... .......... .......... 359 GTAATAAGTA AAACTGTTTC TGATATTGTC TCTTGAGGCA GGATTACATG GGGGATGATG 123211 .......... .......... .......... .......... .......... .......... 359 TTACTGTTTT ACATTTACCT AGTAATAACA GTTTCTGATA TTGTCTCTTG AGGCAGGATT 123151 |||| .......... .......... .......... .......... .......... ......GATT 363 ACACGGGGGA TGATGTTACT GTTGACAACT TTCTTGCTGC TCTCCTTGGG AACAAAACTG 123091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACGGGGGA TGATGTTACT GTTGACAACT TTCTTGCTGC TCTCCTTGGG AACAAAACTG 423 CACTTACCGG AGGCAGTGGA AAGGTTGTAG ATAGTGGTCC AAATGATCAT ATCTTCATCT 123031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTACCGG AGGCAGTGGA AAGGTTGTAG ATAGTGGTCC AAATGATCAT ATCTTCATCT 483 TTTATAGTGA TCATGGAGGT GCTGGAGTGC TTGGTGAGTA GCTTCATTAT ACTTGATCCT 122971 |||||||||| |||||||||| |||||||||| ||| TTTATAGTGA TCATGGAGGT GCTGGAGTGC TTG....... .......... .......... 516 TTTCTGTTCA TGTATCCTCT ATGCCCATAT TTAGTAATGA TGTTTTTATA GTGCTAGAAA 122911 .......... .......... .......... .......... .......... .......... 516 ATGATGTTTA CTGGTTCTTG TTCTTTTAGA CAAACAGGAC GTAAATTGGT TATGCATCTA 122851 .......... .......... .......... .......... .......... .......... 516 ACTGTTATCT GTTGAATATC AACAGTTCTT CAAAATTCTG TTTGCACGGA AAAAGTTTGG 122791 .......... .......... .......... .......... .......... .......... 516 GAAAATCCTA TTGGTATTGA AAAAAAGGGC ACTCGACTTA CTAATTGTGT CAATAGGGCA 122731 .......... .......... .......... .......... .......... .......... 516 ATTAGTAGTT TCTTGATTTT ATCATAGACA TTATTTTTCT AGGATTCACA ATTACTATCT 122671 .......... .......... .......... .......... .......... .......... 516 ACAAGCATAT ACCTTCCTCG AGCGGAACCT ATTCATTTTA ATTGTTAAAC AGTATTCCCA 122611 .......... .......... .......... .......... .......... .......... 516 AGGTTAATAT GCCATCCTAA TTAACAATAA CATGTTTGAA TTTTTTGATT ATGATATAGG 122551 .......... .......... .......... .......... .......... .......... 516 CTGCTATACT CCACAAGAAA TCACTAGCTA AGTTAATTCA GAATCTGTCT CATTTTAATG 122491 .......... .......... .......... .......... .......... .......... 516 GTTTTATTAT GTCTCTTATG AACAATCTTC TCTTTTGATC TTTCAAGTTT TGAGCAATCA 122431 .......... .......... .......... .......... .......... .......... 516 CTGTTGTATG TGAAGTTCTA TCATTTGTTT GGATCATGGG TGAGTTGGTT ATTCTGGGGA 122371 .......... .......... .......... .......... .......... .......... 516 TGAATATAAT GAGACAGGAC ATGTTTTGTT GGATCAAAGT GTTGAAGGCT TGCTGTGTCA 122311 .......... .......... .......... .......... .......... .......... 516 ATTATATTTT GCATTTGATG GGCTTTTTAA ATTGCATGAA GAATAATTTA TAGTTCCTTC 122251 .......... .......... .......... .......... .......... .......... 516 ACTTCATATA CTAATAATAG TGTCATGTCT TCTAGGAATG CCTACCAATC CTTACCTCTA 122191 ||||| |||||||||| |||||||||| .......... .......... .......... .....GAATG CCTACCAATC CTTACCTCTA 541 TGCAAATGAT CTGATTGATG CTCTGAAAAT GAAGCATGCT 122151 |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT CTGATTGATG CTCTGAAAAT GAAGCATGCT 581 hqPGS_C08HBa0197A05.1-_SGN-E331426+ (125130 124937,123469 123305,123154 122998,122215 122151) ******************************************************************************** EST sequence 76 +strand 543 n (File: SGN-E287822+) 1 CTCGTCGGAA TCGCCGTGCT TGCCGCCGTC GAAGGACGTA ATGTTTTGAA ACTTCCGTCG 61 GAAGCTTCCA GATTCTTCGA TGACGCAGAT GACTCTGTTG GAACCAGATG GGCCGTCCTT 121 CTCGCCGGAT CAAATGGTTA TTGGAATTAT AGACATCAGG CTGATGTATG CCATGCGTAT 181 CAGCTATTGA GAAAAGGTGG TCTCAAAGAT GAAAATATTA TTGTCTTCAT GTATGATGAC 241 ATTGCTCACC ATGAAGAGAA CCCAAGACCA GGAGTTATTA TTAATAGTCC TGCCGGTGAG 301 GATGTTTACG AAGGAGTTCC TAAGGATTAC ACGGGAGATG ATGTTAATGT GCACAACTTT 361 TTAGCTGTTC TCCTTGGTAA CAAAACTGCT CTTACTGGAG GTAGCGGAAA GGTGGTGAAT 421 AGTGGTCCAA ATGATCATAT TTTCATATTC TATAGTGATC ATGGTGGCCC TGGCGTGCTT 481 GGGATGCCTA CCAATCCTTA TCTATATGCC GATGATCTAA TTGCTGTGTT GAAAAAGAAG 541 CAT Predicted gene structure (within gDNA segment 125983 to 119983): Exon 1 125062 124937 ( 126 n); cDNA 37 159 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 160 324 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 122998 ( 157 n); cDNA 325 481 ( 157 n); score: 0.860 Intron 3 122997 122216 ( 782 n); Pd: 0.992 (s: 0.86), Pa: 0.888 (s: 0.80) Exon 4 122215 122154 ( 62 n); cDNA 482 543 ( 62 n); score: 0.823 MATCH C08HBa0197A05.1- SGN-E287822+ 0.839 510 0.939 C PGS_C08HBa0197A05.1-_SGN-E287822+ (125062 124937,123469 123305,123154 122998,122215 122154) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 93 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 153 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 159 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 159 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 159 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 159 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 159 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 159 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 159 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 159 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 159 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 159 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 159 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 159 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 159 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 159 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 159 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 159 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 159 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 159 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 159 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 159 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 159 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 159 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 159 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 159 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 186 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 246 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 306 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 324 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 324 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 336 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 396 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT 123023 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || |||||| GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTATAGT 456 GATCATGGAG GTGCTGGAGT GCTTGGTGAG TAGCTTCATT ATACTTGATC CTTTTCTGTT 122963 |||||||| | | |||| || ||||| GATCATGGTG GCCCTGGCGT GCTTG..... .......... .......... .......... 481 CATGTATCCT CTATGCCCAT ATTTAGTAAT GATGTTTTTA TAGTGCTAGA AAATGATGTT 122903 .......... .......... .......... .......... .......... .......... 481 TACTGGTTCT TGTTCTTTTA GACAAACAGG ACGTAAATTG GTTATGCATC TAACTGTTAT 122843 .......... .......... .......... .......... .......... .......... 481 CTGTTGAATA TCAACAGTTC TTCAAAATTC TGTTTGCACG GAAAAAGTTT GGGAAAATCC 122783 .......... .......... .......... .......... .......... .......... 481 TATTGGTATT GAAAAAAAGG GCACTCGACT TACTAATTGT GTCAATAGGG CAATTAGTAG 122723 .......... .......... .......... .......... .......... .......... 481 TTTCTTGATT TTATCATAGA CATTATTTTT CTAGGATTCA CAATTACTAT CTACAAGCAT 122663 .......... .......... .......... .......... .......... .......... 481 ATACCTTCCT CGAGCGGAAC CTATTCATTT TAATTGTTAA ACAGTATTCC CAAGGTTAAT 122603 .......... .......... .......... .......... .......... .......... 481 ATGCCATCCT AATTAACAAT AACATGTTTG AATTTTTTGA TTATGATATA GGCTGCTATA 122543 .......... .......... .......... .......... .......... .......... 481 CTCCACAAGA AATCACTAGC TAAGTTAATT CAGAATCTGT CTCATTTTAA TGGTTTTATT 122483 .......... .......... .......... .......... .......... .......... 481 ATGTCTCTTA TGAACAATCT TCTCTTTTGA TCTTTCAAGT TTTGAGCAAT CACTGTTGTA 122423 .......... .......... .......... .......... .......... .......... 481 TGTGAAGTTC TATCATTTGT TTGGATCATG GGTGAGTTGG TTATTCTGGG GATGAATATA 122363 .......... .......... .......... .......... .......... .......... 481 ATGAGACAGG ACATGTTTTG TTGGATCAAA GTGTTGAAGG CTTGCTGTGT CAATTATATT 122303 .......... .......... .......... .......... .......... .......... 481 TTGCATTTGA TGGGCTTTTT AAATTGCATG AAGAATAATT TATAGTTCCT TCACTTCATA 122243 .......... .......... .......... .......... .......... .......... 481 TACTAATAAT AGTGTCATGT CTTCTAGGAA TGCCTACCAA TCCTTACCTC TATGCAAATG 122183 | | |||||||||| |||||| || ||||| ||| .......... .......... .......GGA TGCCTACCAA TCCTTATCTA TATGCCGATG 514 ATCTGATTGA TGCTCTGAAA ATGAAGCAT 122154 |||| |||| || ||||| | ||||||| ATCTAATTGC TGTGTTGAAA AAGAAGCAT 543 hqPGS_C08HBa0197A05.1-_SGN-E287822+ (125062 124937,123469 123305,123154 122998,122215 122154) ******************************************************************************** EST sequence 58 +strand 554 n (File: SGN-E341488+) 1 TTTTTTTAAT TGTATTATCG GAGCTCGGAT AATGATTCGT TCCGTCGCCG GAGTTTTGTT 61 CCTGAGTGCG CTCTCGTTAA ACGTCTCCGT TTCCGAGAGC CGTAATTTTT TGAAACTTCC 121 GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC TCCGTCGGTA CTAGATGGGC 181 TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT CACCAGGCTG ATATATGTCA 241 TGCATATCAA CTGTTGAAGA AGGGTGGTCT CAAAGATGAG AACATTGTTG TGTTCATGTA 301 TGATGACATT GCAAACAATG AAGAGAACCC AAGGCAAGGA GTTATCATTA ATAGCCCTCA 361 TGGTGAGGAT GTTTACAACG GAGTACCTAA GGATTACACG GGGGATGATG TTACTGTTGA 421 CAACTTTCTT GCTGCTCTCC TTGGGAACAA AACTGCACTT ACCGGAGGCA GTGGAAAGGT 481 TGTAGATAGT GGTCCAAATG ATCATATCTT CATCTTTTAT AGTGATCATG GAGGTGCTGG 541 AGTGCTTGGA ATGC Predicted gene structure (within gDNA segment 125762 to 122337): Exon 1 125162 124937 ( 226 n); cDNA 1 226 ( 226 n); score: 0.991 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 227 391 ( 165 n); score: 1.000 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 123154 122998 ( 157 n); cDNA 392 548 ( 157 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E341488+ 0.996 548 0.989 C PGS_C08HBa0197A05.1-_SGN-E341488+ (125162 124937,123469 123305,123154 122998) Alignment (genomic DNA sequence = upper lines): TTTTTTTAAT TGTATTATCG GAGCTCGGAT AATGAATCGT TCCGTCGCCG GAGTTTTGTT 125103 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTTTTTAAT TGTATTATCG GAGCTCGGAT AATGATTCGT TCCGTCGCCG GAGTTTTGTT 60 CCTGATTGCG CTCTCGTTAA ACGTCTCCGT TTCCGAGAGC CGTAATTTTT TGAAACTTCC 125043 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAGTGCG CTCTCGTTAA ACGTCTCCGT TTCCGAGAGC CGTAATTTTT TGAAACTTCC 120 GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC TCCGTCGGTA CTAGATGGGC 124983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC TCCGTCGGTA CTAGATGGGC 180 TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT CACCAGGTGA TTATACGATT 124923 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT CACCAG.... .......... 226 TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT TTGAAGCGTT TTTTTTGTTT 124863 .......... .......... .......... .......... .......... .......... 226 GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA TATATGTTTA ATGTTTTTTC 124803 .......... .......... .......... .......... .......... .......... 226 ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA CGGAGCTACT GTATAGTTTA 124743 .......... .......... .......... .......... .......... .......... 226 TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT AATAAGAAAC TATATAATAT 124683 .......... .......... .......... .......... .......... .......... 226 ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA TTTTTTTTTT GAAATAAAAT 124623 .......... .......... .......... .......... .......... .......... 226 TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA AGGAAGAACA ACACTTTTGA 124563 .......... .......... .......... .......... .......... .......... 226 TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA CTCCGTTTCA CGAAGAATAG 124503 .......... .......... .......... .......... .......... .......... 226 TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT TTTGATCCTG TAGTGTTAAA 124443 .......... .......... .......... .......... .......... .......... 226 TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT GTGGCCTTAA ACATAGTACA 124383 .......... .......... .......... .......... .......... .......... 226 TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC ATATGAAAAG TTATTACAAA 124323 .......... .......... .......... .......... .......... .......... 226 AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC TCATTCTTTT TGAAACCGAA 124263 .......... .......... .......... .......... .......... .......... 226 GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG GATTTTAATG AATCCCTTTT 124203 .......... .......... .......... .......... .......... .......... 226 GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT TTGGAGGGTA TAAAGATTGT 124143 .......... .......... .......... .......... .......... .......... 226 GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT CATCCAAATA TTAGTTTGGA 124083 .......... .......... .......... .......... .......... .......... 226 TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA GTCAAACTTG CTAATTCTTA 124023 .......... .......... .......... .......... .......... .......... 226 ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT TCCTTATTTG GGTTAATTAT 123963 .......... .......... .......... .......... .......... .......... 226 AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG ACAGTGCATA TTATCCATTA 123903 .......... .......... .......... .......... .......... .......... 226 GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA CCAGTTTCAA GAAAGCTGGT 123843 .......... .......... .......... .......... .......... .......... 226 GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA TTCTGTGGTG TAACTTAGGG 123783 .......... .......... .......... .......... .......... .......... 226 GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT GTGACCTTGC CAATATATAT 123723 .......... .......... .......... .......... .......... .......... 226 GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA AGTACTACTG CAAATACTGG 123663 .......... .......... .......... .......... .......... .......... 226 ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT CTAACTAGTT GGTTACATAT 123603 .......... .......... .......... .......... .......... .......... 226 GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT CGAGATTGGC TAGAAAAAAA 123543 .......... .......... .......... .......... .......... .......... 226 AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA GATTGTTAAT ATGTCCTGCT 123483 .......... .......... .......... .......... .......... .......... 226 ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG TTGAAGAAGG GTGGTCTCAA 123423 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCTGATA TATGTCATGC ATATCAACTG TTGAAGAAGG GTGGTCTCAA 273 AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA AACAATGAAG AGAACCCAAG 123363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA AACAATGAAG AGAACCCAAG 333 GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT TACAACGGAG TACCTAAGGT 123303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT TACAACGGAG TACCTAAG.. 391 AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG TAAAACTGTT TCTGATATTG 123243 .......... .......... .......... .......... .......... .......... 391 TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT TTACATTTAC CTAGTAATAA 123183 .......... .......... .......... .......... .......... .......... 391 CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG GATGATGTTA CTGTTGACAA 123123 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA TTACACGGGG GATGATGTTA CTGTTGACAA 423 CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC GGAGGCAGTG GAAAGGTTGT 123063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC GGAGGCAGTG GAAAGGTTGT 483 AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT GATCATGGAG GTGCTGGAGT 123003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTATAGT GATCATGGAG GTGCTGGAGT 543 GCTTG 122998 ||||| GCTTG 548 hqPGS_C08HBa0197A05.1-_SGN-E341488+ (125162 124937,123469 123305,123154 122998) ******************************************************************************** EST sequence 80 +strand 540 n (File: SGN-E309784+) 1 ATTATCGGAG CTCGGATAAT GAATCGTTCC GTCGCCGGAG TTTTGTTCCT GATTGCGCTC 61 TCGTTAAACG TCTCCGTTTC CGAGAGCCGT AATTTTTTGA AACTTCCGTC TGAAGGTTCT 121 AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 181 GGATCAAACG GTTATTGGAA TTACCGTCAC CAGGCTGATA TATGTCATGC ATATCAACTG 241 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 301 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 361 TACAACGGAG TACCTCAGGA TTACACGGGG GATGATGTTA CTGTTGACAA CTTTCTTGCT 421 GCTCTCCTTG GGAACAAAAC TGCACTTACC GGAGGCAGTG GAAAGGTTGT AGATAGTGGT 481 CCAAATGATC ATATCTTCAT CTTTTATAGT GATCATGGAG GTGCTGGAGT GCTTGGAATG Predicted gene structure (within gDNA segment 125749 to 122347): Exon 1 125149 124937 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 214 378 ( 165 n); score: 0.994 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.98), Pa: 0.995 (s: 1.00) Exon 3 123154 122998 ( 157 n); cDNA 379 535 ( 157 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E309784+ 0.998 535 0.991 C PGS_C08HBa0197A05.1-_SGN-E309784+ (125149 124937,123469 123305,123154 122998) Alignment (genomic DNA sequence = upper lines): ATTATCGGAG CTCGGATAAT GAATCGTTCC GTCGCCGGAG TTTTGTTCCT GATTGCGCTC 125090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATCGGAG CTCGGATAAT GAATCGTTCC GTCGCCGGAG TTTTGTTCCT GATTGCGCTC 60 TCGTTAAACG TCTCCGTTTC CGAGAGCCGT AATTTTTTGA AACTTCCGTC TGAAGGTTCT 125030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTAAACG TCTCCGTTTC CGAGAGCCGT AATTTTTTGA AACTTCCGTC TGAAGGTTCT 120 AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 124970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 180 GGATCAAACG GTTATTGGAA TTACCGTCAC CAGGTGATTA TACGATTTAT TTGCTATTGT 124910 |||||||||| |||||||||| |||||||||| ||| GGATCAAACG GTTATTGGAA TTACCGTCAC CAG....... .......... .......... 213 TTTTTTTTTA CTTTAAATAT TTTACTTTTG AAGCGTTTTT TTTGTTTGTT TGTGATGGTT 124850 .......... .......... .......... .......... .......... .......... 213 GATGGAGGTT AATATAAGTT GATTGAATAT ATGTTTAATG TTTTTTCACC CTTATGATGA 124790 .......... .......... .......... .......... .......... .......... 213 GTGGTTCAAG TGTCAAATTA GTGGGAACGG AGCTACTGTA TAGTTTATTA CAGCTTCCAT 124730 .......... .......... .......... .......... .......... .......... 213 TGACTTTAGT ATATGCTTTT GTGAGCTAAT AAGAAACTAT ATAATATATA CTTAAATATG 124670 .......... .......... .......... .......... .......... .......... 213 TCACCATTTC TTGTCATTTG ATATGGATTT TTTTTTTGAA ATAAAATTGA AATTTGACTA 124610 .......... .......... .......... .......... .......... .......... 213 GTCTGAATTT CCACCAACCT CTGTTTAAGG AAGAACAACA CTTTTGATAT GGATTTGTCA 124550 .......... .......... .......... .......... .......... .......... 213 AACCTATGGA GAAAAATTTA TCACTTACTC CGTTTCACGA AGAATAGTAG TTTAACTGAT 124490 .......... .......... .......... .......... .......... .......... 213 TTGGAATTTA AAAAATAAAA AATGACTTTT GATCCTGTAG TGTTAAATTA AAATTATGTC 124430 .......... .......... .......... .......... .......... .......... 213 AAATGTACAA AATTATTTTT TAATCTTGTG GCCTTAAACA TAGTACATAG AAAGTTGTTA 124370 .......... .......... .......... .......... .......... .......... 213 CAAAAAAAAA AAAGCCTTCA ACATGACATA TGAAAAGTTA TTACAAAAAA AAAGGTCATT 124310 .......... .......... .......... .......... .......... .......... 213 CTTTTAGAAC CGGACTAAAA AAAGAGCTCA TTCTTTTTGA AACCGAAGAA GTATAAAGCT 124250 .......... .......... .......... .......... .......... .......... 213 AGAGGGACTT AACTATCTTT TGTGAAGGAT TTTAATGAAT CCCTTTTGAA AAATTACGCT 124190 .......... .......... .......... .......... .......... .......... 213 AGAGTAAACA TTTGTTGTTT CTGGACTTTG GAGGGTATAA AGATTGTGAC TTAACTGTAC 124130 .......... .......... .......... .......... .......... .......... 213 GGTGCTTGAT AGAGCTTAAA CGTGTGTCAT CCAAATATTA GTTTGGATAT GGTAAGAGCT 124070 .......... .......... .......... .......... .......... .......... 213 AGGTTACTAT TGATGACAGG CATAAGAGTC AAACTTGCTA ATTCTTAATT TATAATCAAT 124010 .......... .......... .......... .......... .......... .......... 213 GAATCACTTT GCTGTTGTGT AACCTTTTCC TTATTTGGGT TAATTATAAC ATGTTAGTGG 123950 .......... .......... .......... .......... .......... .......... 213 GGGATGTTAA TTGTGGGGCT AACCACGACA GTGCATATTA TCCATTAGTA TATTTGTCTC 123890 .......... .......... .......... .......... .......... .......... 213 GATATGATAT ACTCATTTTA GTAAGGACCA GTTTCAAGAA AGCTGGTGTG GGGTATCCTG 123830 .......... .......... .......... .......... .......... .......... 213 CCACTGGTGT TAGTTGATGT AATACTATTC TGTGGTGTAA CTTAGGGGTT CTTTTCTTGT 123770 .......... .......... .......... .......... .......... .......... 213 TTCTGAGTTG CAAGGTCTTT TACTTGTGTG ACCTTGCCAA TATATATGTT AGATGTGCGC 123710 .......... .......... .......... .......... .......... .......... 213 GGACATAATA ATATCTAACC GTATTAAAGT ACTACTGCAA ATACTGGACA TAATGTTTAA 123650 .......... .......... .......... .......... .......... .......... 213 CATATCAAGA AAGGCTAGGT GTTGATTCTA ACTAGTTGGT TACATATGTA TGGATCATTC 123590 .......... .......... .......... .......... .......... .......... 213 CTTTTCGTTG TTTTAATAAA TTGAATTCGA GATTGGCTAG AAAAAAAAAA CTTCTCTTGA 123530 .......... .......... .......... .......... .......... .......... 213 TTATGGGAAT CCACATGGTT ATTTATAGAT TGTTAATATG TCCTGCTATC CTTGACTCAG 123470 .......... .......... .......... .......... .......... .......... 213 GCTGATATAT GTCATGCATA TCAACTGTTG AAGAAGGGTG GTCTCAAAGA TGAGAACATT 123410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATATAT GTCATGCATA TCAACTGTTG AAGAAGGGTG GTCTCAAAGA TGAGAACATT 273 GTTGTGTTCA TGTATGATGA CATTGCAAAC AATGAAGAGA ACCCAAGGCA AGGAGTTATC 123350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTCA TGTATGATGA CATTGCAAAC AATGAAGAGA ACCCAAGGCA AGGAGTTATC 333 ATTAATAGCC CTCATGGTGA GGATGTTTAC AACGGAGTAC CTAAGGTAAG TTTGTTTCCG 123290 |||||||||| |||||||||| |||||||||| |||||||||| || || ATTAATAGCC CTCATGGTGA GGATGTTTAC AACGGAGTAC CTCAG..... .......... 378 TAAATTTTAC ATTTACCTAG TAATAAGTAA AACTGTTTCT GATATTGTCT CTTGAGGCAG 123230 .......... .......... .......... .......... .......... .......... 378 GATTACATGG GGGATGATGT TACTGTTTTA CATTTACCTA GTAATAACAG TTTCTGATAT 123170 .......... .......... .......... .......... .......... .......... 378 TGTCTCTTGA GGCAGGATTA CACGGGGGAT GATGTTACTG TTGACAACTT TCTTGCTGCT 123110 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATTA CACGGGGGAT GATGTTACTG TTGACAACTT TCTTGCTGCT 423 CTCCTTGGGA ACAAAACTGC ACTTACCGGA GGCAGTGGAA AGGTTGTAGA TAGTGGTCCA 123050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTGGGA ACAAAACTGC ACTTACCGGA GGCAGTGGAA AGGTTGTAGA TAGTGGTCCA 483 AATGATCATA TCTTCATCTT TTATAGTGAT CATGGAGGTG CTGGAGTGCT TG 122998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AATGATCATA TCTTCATCTT TTATAGTGAT CATGGAGGTG CTGGAGTGCT TG 535 hqPGS_C08HBa0197A05.1-_SGN-E309784+ (125149 124937,123469 123305,123154 122998) ******************************************************************************** EST sequence 59 +strand 523 n (File: SGN-E252101+) 1 TTGTATTATC GGAACTCGGA TAATGAATCG TTCCGTCGCC GGAGTGGTGT TCTTGATTGC 61 GCTCTCGTTA AACGTCTCCG TTTCCGAGAG CCGTAATTTT TTGAAACTTC CGTCTGAAGG 121 TTCTAGATTC TTCGATGCCG ATGAGATCGA CTCCGTCGGT ACTAGATGGG CTATTTTGCT 181 TGCCGGATCA AACGGTTATT GGAATTACCG TCACCAGGCT GATATATGTC ATGCATATCA 241 ACTGTTGAAG AAGGGTGGTC TCAAAGATGA GAACATTGTT GTGTTCATGT ATGATGACAT 301 TGCAAACAAT GAAGAGAACC CAAGGCAAGG AGTTATCATT AATAGCCCTC ATGGTGAGGA 361 TGTTTACAAC GGAGTACCTA AGGATTACAC GGGGGATGAT GTTACTGTTG ACAACTTTCT 421 TGCTGCTCTC CTTGGGAACA AAACTGCACT TACCGGAGGC AGTGGAAAGG TTGTAGATAG 481 TGGTCCAAAT GATCATATCT TCATCTTTTA TAGTGATCAT GGA Predicted gene structure (within gDNA segment 125879 to 122404): Exon 1 125153 124937 ( 217 n); cDNA 1 217 ( 217 n); score: 0.982 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 218 382 ( 165 n); score: 1.000 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 123154 123014 ( 141 n); cDNA 383 523 ( 141 n); score: 1.000 MATCH C08HBa0197A05.1- SGN-E252101+ 0.992 523 1.000 C PGS_C08HBa0197A05.1-_SGN-E252101+ (125153 124937,123469 123305,123154 123014) Alignment (genomic DNA sequence = upper lines): TTGTATTATC GGAGCTCGGA TAATGAATCG TTCCGTCGCC GGAGTTTTGT TCCTGATTGC 125094 |||||||||| ||| |||||| |||||||||| |||||||||| ||||| ||| || ||||||| TTGTATTATC GGAACTCGGA TAATGAATCG TTCCGTCGCC GGAGTGGTGT TCTTGATTGC 60 GCTCTCGTTA AACGTCTCCG TTTCCGAGAG CCGTAATTTT TTGAAACTTC CGTCTGAAGG 125034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTCGTTA AACGTCTCCG TTTCCGAGAG CCGTAATTTT TTGAAACTTC CGTCTGAAGG 120 TTCTAGATTC TTCGATGCCG ATGAGATCGA CTCCGTCGGT ACTAGATGGG CTATTTTGCT 124974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAGATTC TTCGATGCCG ATGAGATCGA CTCCGTCGGT ACTAGATGGG CTATTTTGCT 180 TGCCGGATCA AACGGTTATT GGAATTACCG TCACCAGGTG ATTATACGAT TTATTTGCTA 124914 |||||||||| |||||||||| |||||||||| ||||||| TGCCGGATCA AACGGTTATT GGAATTACCG TCACCAG... .......... .......... 217 TTGTTTTTTT TTTACTTTAA ATATTTTACT TTTGAAGCGT TTTTTTTGTT TGTTTGTGAT 124854 .......... .......... .......... .......... .......... .......... 217 GGTTGATGGA GGTTAATATA AGTTGATTGA ATATATGTTT AATGTTTTTT CACCCTTATG 124794 .......... .......... .......... .......... .......... .......... 217 ATGAGTGGTT CAAGTGTCAA ATTAGTGGGA ACGGAGCTAC TGTATAGTTT ATTACAGCTT 124734 .......... .......... .......... .......... .......... .......... 217 CCATTGACTT TAGTATATGC TTTTGTGAGC TAATAAGAAA CTATATAATA TATACTTAAA 124674 .......... .......... .......... .......... .......... .......... 217 TATGTCACCA TTTCTTGTCA TTTGATATGG ATTTTTTTTT TGAAATAAAA TTGAAATTTG 124614 .......... .......... .......... .......... .......... .......... 217 ACTAGTCTGA ATTTCCACCA ACCTCTGTTT AAGGAAGAAC AACACTTTTG ATATGGATTT 124554 .......... .......... .......... .......... .......... .......... 217 GTCAAACCTA TGGAGAAAAA TTTATCACTT ACTCCGTTTC ACGAAGAATA GTAGTTTAAC 124494 .......... .......... .......... .......... .......... .......... 217 TGATTTGGAA TTTAAAAAAT AAAAAATGAC TTTTGATCCT GTAGTGTTAA ATTAAAATTA 124434 .......... .......... .......... .......... .......... .......... 217 TGTCAAATGT ACAAAATTAT TTTTTAATCT TGTGGCCTTA AACATAGTAC ATAGAAAGTT 124374 .......... .......... .......... .......... .......... .......... 217 GTTACAAAAA AAAAAAAGCC TTCAACATGA CATATGAAAA GTTATTACAA AAAAAAAGGT 124314 .......... .......... .......... .......... .......... .......... 217 CATTCTTTTA GAACCGGACT AAAAAAAGAG CTCATTCTTT TTGAAACCGA AGAAGTATAA 124254 .......... .......... .......... .......... .......... .......... 217 AGCTAGAGGG ACTTAACTAT CTTTTGTGAA GGATTTTAAT GAATCCCTTT TGAAAAATTA 124194 .......... .......... .......... .......... .......... .......... 217 CGCTAGAGTA AACATTTGTT GTTTCTGGAC TTTGGAGGGT ATAAAGATTG TGACTTAACT 124134 .......... .......... .......... .......... .......... .......... 217 GTACGGTGCT TGATAGAGCT TAAACGTGTG TCATCCAAAT ATTAGTTTGG ATATGGTAAG 124074 .......... .......... .......... .......... .......... .......... 217 AGCTAGGTTA CTATTGATGA CAGGCATAAG AGTCAAACTT GCTAATTCTT AATTTATAAT 124014 .......... .......... .......... .......... .......... .......... 217 CAATGAATCA CTTTGCTGTT GTGTAACCTT TTCCTTATTT GGGTTAATTA TAACATGTTA 123954 .......... .......... .......... .......... .......... .......... 217 GTGGGGGATG TTAATTGTGG GGCTAACCAC GACAGTGCAT ATTATCCATT AGTATATTTG 123894 .......... .......... .......... .......... .......... .......... 217 TCTCGATATG ATATACTCAT TTTAGTAAGG ACCAGTTTCA AGAAAGCTGG TGTGGGGTAT 123834 .......... .......... .......... .......... .......... .......... 217 CCTGCCACTG GTGTTAGTTG ATGTAATACT ATTCTGTGGT GTAACTTAGG GGTTCTTTTC 123774 .......... .......... .......... .......... .......... .......... 217 TTGTTTCTGA GTTGCAAGGT CTTTTACTTG TGTGACCTTG CCAATATATA TGTTAGATGT 123714 .......... .......... .......... .......... .......... .......... 217 GCGCGGACAT AATAATATCT AACCGTATTA AAGTACTACT GCAAATACTG GACATAATGT 123654 .......... .......... .......... .......... .......... .......... 217 TTAACATATC AAGAAAGGCT AGGTGTTGAT TCTAACTAGT TGGTTACATA TGTATGGATC 123594 .......... .......... .......... .......... .......... .......... 217 ATTCCTTTTC GTTGTTTTAA TAAATTGAAT TCGAGATTGG CTAGAAAAAA AAAACTTCTC 123534 .......... .......... .......... .......... .......... .......... 217 TTGATTATGG GAATCCACAT GGTTATTTAT AGATTGTTAA TATGTCCTGC TATCCTTGAC 123474 .......... .......... .......... .......... .......... .......... 217 TCAGGCTGAT ATATGTCATG CATATCAACT GTTGAAGAAG GGTGGTCTCA AAGATGAGAA 123414 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GCTGAT ATATGTCATG CATATCAACT GTTGAAGAAG GGTGGTCTCA AAGATGAGAA 273 CATTGTTGTG TTCATGTATG ATGACATTGC AAACAATGAA GAGAACCCAA GGCAAGGAGT 123354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTGTG TTCATGTATG ATGACATTGC AAACAATGAA GAGAACCCAA GGCAAGGAGT 333 TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAGG TAAGTTTGTT 123294 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATCATTAAT AGCCCTCATG GTGAGGATGT TTACAACGGA GTACCTAAG. .......... 382 TCCGTAAATT TTACATTTAC CTAGTAATAA GTAAAACTGT TTCTGATATT GTCTCTTGAG 123234 .......... .......... .......... .......... .......... .......... 382 GCAGGATTAC ATGGGGGATG ATGTTACTGT TTTACATTTA CCTAGTAATA ACAGTTTCTG 123174 .......... .......... .......... .......... .......... .......... 382 ATATTGTCTC TTGAGGCAGG ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 123114 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G ATTACACGGG GGATGATGTT ACTGTTGACA ACTTTCTTGC 423 TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 123054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTCCTT GGGAACAAAA CTGCACTTAC CGGAGGCAGT GGAAAGGTTG TAGATAGTGG 483 TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA 123014 |||||||||| |||||||||| |||||||||| |||||||||| TCCAAATGAT CATATCTTCA TCTTTTATAG TGATCATGGA 523 hqPGS_C08HBa0197A05.1-_SGN-E252101+ (125153 124937,123469 123305,123154 123014) ******************************************************************************** EST sequence 55 +strand 418 n (File: SGN-E269430+) 1 GACGTAATGT TTTGAAACTT CCGTCGGAAG CTTCCAGATT CTTCGATGAC GCAGATGACT 61 CTGTTGGAAC CAGATGGGCC GTCCTTCTCG CCGGATCAAA TGGTTATTGG AATTATAGAC 121 ATCAGGCTGA TGTATGCCAT GCGTATCAGC TATTGAGAAA AGGTGGTCTC AAAGATGAAA 181 ATATTATTGT CTTCATGTAT GATGACATTG CTCACCATGA AGAGAACCCA AGACCAGGAG 241 TTATTATTAA TAGTCCTGCC GGTGAGGATG TTTACGAAGG AGTTCCTAAG GATTACACGG 301 GAGATGATGT TAATGTGCAC AACTTTTTAG CTGTTCTCCT TGGTAACAAA ACTGCTCTTA 361 CTGGAGGTAG CGGAAAGGTG GTGAATAGTG GTCCAAATGA TCATATTTTC ATATTCTA Predicted gene structure (within gDNA segment 125643 to 120893): Exon 1 125062 124937 ( 126 n); cDNA 3 125 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 126 290 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 123027 ( 128 n); cDNA 291 418 ( 128 n); score: 0.859 MATCH C08HBa0197A05.1- SGN-E269430+ 0.840 419 1.002 C PGS_C08HBa0197A05.1-_SGN-E269430+ (125062 124937,123469 123305,123154 123027) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 59 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 119 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 125 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 125 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 125 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 125 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 125 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 125 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 125 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 125 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 125 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 125 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 125 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 125 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 125 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 125 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 125 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 125 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 125 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 125 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 125 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 125 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 125 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 125 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 125 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 125 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 152 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 212 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 272 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 290 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 290 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 302 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 362 GGAGGCAGTG GAAAGGTTGT AGATAGTGGT CCAAATGATC ATATCTTCAT CTTTTA 123027 ||||| || | ||||||| || |||||||| |||||||||| |||| ||||| || || GGAGGTAGCG GAAAGGTGGT GAATAGTGGT CCAAATGATC ATATTTTCAT ATTCTA 418 hqPGS_C08HBa0197A05.1-_SGN-E269430+ (125062 124937,123469 123305,123154 123027) ******************************************************************************** EST sequence 45 +strand 441 n (File: SGN-E282515+) 1 GTCGCCGGAG TTTTCATCCT CGTCGGAATC GCCGTGCTTG CCGCCGTCGA AGGACGTAAT 61 GTTTTGAAAC TTCCGTCGGA AGCTTCCAGA TTCTTCGATG ACGCAGATGA CTCTGTTGGA 121 ACCAGATGGG CCGTCCTTCT CGCCGGATCA AATGGTTATT GGAATTATAG ACATCAGGCT 181 GATGTATGCC ATGCGTATCA GCTATTGAGA AAAGGTGGTC TCAAAGATGA AAATATTATT 241 GTCTTCATGT ATGATGACAT TGCTCACCAT GAAGAGAACC CAAGACCAGG AGTTATTATT 301 AATAGTCCTG CCGGTGAGGA TGTTTACGAA GGAGTTCCTA AGGATTACAC GGGAGATGAT 361 GTTAATGTGC ACAACTTTTT AGCTGTTCTC CTTGGTAACA AAACTGCTCT TACTGGAGGT 421 AGCGGAAAGG TGGTGAATAG T Predicted gene structure (within gDNA segment 126163 to 121183): Exon 1 125062 124937 ( 126 n); cDNA 55 177 ( 123 n); score: 0.810 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 0.78), Pa: 0.994 (s: 0.84) Exon 2 123469 123305 ( 165 n); cDNA 178 342 ( 165 n); score: 0.848 Intron 2 123304 123155 ( 150 n); Pd: 1.000 (s: 0.84), Pa: 0.995 (s: 0.86) Exon 3 123154 123056 ( 99 n); cDNA 343 441 ( 99 n); score: 0.848 MATCH C08HBa0197A05.1- SGN-E282515+ 0.836 390 0.884 C PGS_C08HBa0197A05.1-_SGN-E282515+ (125062 124937,123469 123305,123154 123056) Alignment (genomic DNA sequence = upper lines): CGTAATTTTT TGAAACTTCC GTCTGAAGGT TCTAGATTCT TCGATGCCGA TGAGATCGAC 125003 |||||| ||| |||||||||| ||| |||| | || ||||||| |||||| || |||| ||| CGTAATGTTT TGAAACTTCC GTCGGAAGCT TCCAGATTCT TCGATGACG- -CAGAT-GAC 111 TCCGTCGGTA CTAGATGGGC TATTTTGCTT GCCGGATCAA ACGGTTATTG GAATTACCGT 124943 || || || | | |||||||| | | || |||||||||| | |||||||| |||||| | TCTGTTGGAA CCAGATGGGC CGTCCTTCTC GCCGGATCAA ATGGTTATTG GAATTATAGA 171 CACCAGGTGA TTATACGATT TATTTGCTAT TGTTTTTTTT TTACTTTAAA TATTTTACTT 124883 || ||| CATCAG.... .......... .......... .......... .......... .......... 177 TTGAAGCGTT TTTTTTGTTT GTTTGTGATG GTTGATGGAG GTTAATATAA GTTGATTGAA 124823 .......... .......... .......... .......... .......... .......... 177 TATATGTTTA ATGTTTTTTC ACCCTTATGA TGAGTGGTTC AAGTGTCAAA TTAGTGGGAA 124763 .......... .......... .......... .......... .......... .......... 177 CGGAGCTACT GTATAGTTTA TTACAGCTTC CATTGACTTT AGTATATGCT TTTGTGAGCT 124703 .......... .......... .......... .......... .......... .......... 177 AATAAGAAAC TATATAATAT ATACTTAAAT ATGTCACCAT TTCTTGTCAT TTGATATGGA 124643 .......... .......... .......... .......... .......... .......... 177 TTTTTTTTTT GAAATAAAAT TGAAATTTGA CTAGTCTGAA TTTCCACCAA CCTCTGTTTA 124583 .......... .......... .......... .......... .......... .......... 177 AGGAAGAACA ACACTTTTGA TATGGATTTG TCAAACCTAT GGAGAAAAAT TTATCACTTA 124523 .......... .......... .......... .......... .......... .......... 177 CTCCGTTTCA CGAAGAATAG TAGTTTAACT GATTTGGAAT TTAAAAAATA AAAAATGACT 124463 .......... .......... .......... .......... .......... .......... 177 TTTGATCCTG TAGTGTTAAA TTAAAATTAT GTCAAATGTA CAAAATTATT TTTTAATCTT 124403 .......... .......... .......... .......... .......... .......... 177 GTGGCCTTAA ACATAGTACA TAGAAAGTTG TTACAAAAAA AAAAAAGCCT TCAACATGAC 124343 .......... .......... .......... .......... .......... .......... 177 ATATGAAAAG TTATTACAAA AAAAAAGGTC ATTCTTTTAG AACCGGACTA AAAAAAGAGC 124283 .......... .......... .......... .......... .......... .......... 177 TCATTCTTTT TGAAACCGAA GAAGTATAAA GCTAGAGGGA CTTAACTATC TTTTGTGAAG 124223 .......... .......... .......... .......... .......... .......... 177 GATTTTAATG AATCCCTTTT GAAAAATTAC GCTAGAGTAA ACATTTGTTG TTTCTGGACT 124163 .......... .......... .......... .......... .......... .......... 177 TTGGAGGGTA TAAAGATTGT GACTTAACTG TACGGTGCTT GATAGAGCTT AAACGTGTGT 124103 .......... .......... .......... .......... .......... .......... 177 CATCCAAATA TTAGTTTGGA TATGGTAAGA GCTAGGTTAC TATTGATGAC AGGCATAAGA 124043 .......... .......... .......... .......... .......... .......... 177 GTCAAACTTG CTAATTCTTA ATTTATAATC AATGAATCAC TTTGCTGTTG TGTAACCTTT 123983 .......... .......... .......... .......... .......... .......... 177 TCCTTATTTG GGTTAATTAT AACATGTTAG TGGGGGATGT TAATTGTGGG GCTAACCACG 123923 .......... .......... .......... .......... .......... .......... 177 ACAGTGCATA TTATCCATTA GTATATTTGT CTCGATATGA TATACTCATT TTAGTAAGGA 123863 .......... .......... .......... .......... .......... .......... 177 CCAGTTTCAA GAAAGCTGGT GTGGGGTATC CTGCCACTGG TGTTAGTTGA TGTAATACTA 123803 .......... .......... .......... .......... .......... .......... 177 TTCTGTGGTG TAACTTAGGG GTTCTTTTCT TGTTTCTGAG TTGCAAGGTC TTTTACTTGT 123743 .......... .......... .......... .......... .......... .......... 177 GTGACCTTGC CAATATATAT GTTAGATGTG CGCGGACATA ATAATATCTA ACCGTATTAA 123683 .......... .......... .......... .......... .......... .......... 177 AGTACTACTG CAAATACTGG ACATAATGTT TAACATATCA AGAAAGGCTA GGTGTTGATT 123623 .......... .......... .......... .......... .......... .......... 177 CTAACTAGTT GGTTACATAT GTATGGATCA TTCCTTTTCG TTGTTTTAAT AAATTGAATT 123563 .......... .......... .......... .......... .......... .......... 177 CGAGATTGGC TAGAAAAAAA AAACTTCTCT TGATTATGGG AATCCACATG GTTATTTATA 123503 .......... .......... .......... .......... .......... .......... 177 GATTGTTAAT ATGTCCTGCT ATCCTTGACT CAGGCTGATA TATGTCATGC ATATCAACTG 123443 |||||| |||| ||||| ||||| || .......... .......... .......... ...GCTGATG TATGCCATGC GTATCAGCTA 204 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 123383 |||| || | |||||||||| |||||| || ||| |||| | |||||||||| ||||||||| TTGAGAAAAG GTGGTCTCAA AGATGAAAAT ATTATTGTCT TCATGTATGA TGACATTGCT 264 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 123323 || |||||| |||||||||| | ||||||| || ||||||| | ||| || |||||||||| CACCATGAAG AGAACCCAAG ACCAGGAGTT ATTATTAATA GTCCTGCCGG TGAGGATGTT 324 TACAACGGAG TACCTAAGGT AAGTTTGTTT CCGTAAATTT TACATTTACC TAGTAATAAG 123263 ||| | |||| | |||||| TACGAAGGAG TTCCTAAG.. .......... .......... .......... .......... 342 TAAAACTGTT TCTGATATTG TCTCTTGAGG CAGGATTACA TGGGGGATGA TGTTACTGTT 123203 .......... .......... .......... .......... .......... .......... 342 TTACATTTAC CTAGTAATAA CAGTTTCTGA TATTGTCTCT TGAGGCAGGA TTACACGGGG 123143 || ||||||||| .......... .......... .......... .......... ........GA TTACACGGGA 354 GATGATGTTA CTGTTGACAA CTTTCTTGCT GCTCTCCTTG GGAACAAAAC TGCACTTACC 123083 |||||||||| ||| |||| |||| | ||| | |||||||| | |||||||| ||| ||||| GATGATGTTA ATGTGCACAA CTTTTTAGCT GTTCTCCTTG GTAACAAAAC TGCTCTTACT 414 GGAGGCAGTG GAAAGGTTGT AGATAGT 123056 ||||| || | ||||||| || ||||| GGAGGTAGCG GAAAGGTGGT GAATAGT 441 hqPGS_C08HBa0197A05.1-_SGN-E282515+ (125062 124937,123469 123305,123154 123056) ******************************************************************************** EST sequence 95 +strand 414 n (File: SGN-E249340+) 1 TTTTTAATTG TATTATCGGA GCTCGGATAA TGAATCGTTC CGGCGCCGGA GTTTTGGTGC 61 CTGATTGCGC TCTCGTTAAA CGTCTCCGTT TCCGAGAGCC GTAATTTTTT GAAACTTCCG 121 TCTGAAGGTT CTAGATTCTT CGATGCCGAT GAGATCGACT CCGTCGGTAC TAGATGGGCT 181 ATTTTGCTTG CCGGATCAAA CGGTTATTGG AATTACCGTC ACCAGGCTGA TATATGTCAT 241 GCATATCAAC TGTTGAAGAA GGGTGGTCTC AAAGATGAGA ACATTGTTGT GTTCATGTAT 301 GATGACATTG CAAACAATGA AGAGAACCCA AGGCAAGGAG TTATCATTAA TAGCCCTCAT 361 GGTGAGGATG TTTACAACGG AGTACCTAAG GATTACACGG GGGATGATGT TACT Predicted gene structure (within gDNA segment 125760 to 122464): Exon 1 125160 124937 ( 224 n); cDNA 1 225 ( 225 n); score: 0.980 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 226 390 ( 165 n); score: 1.000 Intron 2 123304 123230 ( 75 n); Pd: 1.000 (s: 1.00), Pa: 0.897 (s: 0) Exon 3 123229 123206 ( 24 n); cDNA 391 414 ( 24 n); score: 0.958 MATCH C08HBa0197A05.1- SGN-E249340+ 0.988 413 0.998 C PGS_C08HBa0197A05.1-_SGN-E249340+ (125160 124937,123469 123305,123229 123206) Alignment (genomic DNA sequence = upper lines): TTTTTAATTG TATTATCGGA GCTCGGATAA TGAATCGTTC CGTCGCCGGA GTTTT-GTTC 125102 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ||||| || | TTTTTAATTG TATTATCGGA GCTCGGATAA TGAATCGTTC CGGCGCCGGA GTTTTGGTGC 60 CTGATTGCGC TCTCGTTAAA CGTCTCCGTT TCCGAGAGCC GTAATTTTTT GAAACTTCCG 125042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATTGCGC TCTCGTTAAA CGTCTCCGTT TCCGAGAGCC GTAATTTTTT GAAACTTCCG 120 TCTGAAGGTT CTAGATTCTT CGATGCCGAT GAGATCGACT CCGTCGGTAC TAGATGGGCT 124982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAAGGTT CTAGATTCTT CGATGCCGAT GAGATCGACT CCGTCGGTAC TAGATGGGCT 180 ATTTTGCTTG CCGGATCAAA CGGTTATTGG AATTACCGTC ACCAGGTGAT TATACGATTT 124922 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTTTGCTTG CCGGATCAAA CGGTTATTGG AATTACCGTC ACCAG..... .......... 225 ATTTGCTATT GTTTTTTTTT TACTTTAAAT ATTTTACTTT TGAAGCGTTT TTTTTGTTTG 124862 .......... .......... .......... .......... .......... .......... 225 TTTGTGATGG TTGATGGAGG TTAATATAAG TTGATTGAAT ATATGTTTAA TGTTTTTTCA 124802 .......... .......... .......... .......... .......... .......... 225 CCCTTATGAT GAGTGGTTCA AGTGTCAAAT TAGTGGGAAC GGAGCTACTG TATAGTTTAT 124742 .......... .......... .......... .......... .......... .......... 225 TACAGCTTCC ATTGACTTTA GTATATGCTT TTGTGAGCTA ATAAGAAACT ATATAATATA 124682 .......... .......... .......... .......... .......... .......... 225 TACTTAAATA TGTCACCATT TCTTGTCATT TGATATGGAT TTTTTTTTTG AAATAAAATT 124622 .......... .......... .......... .......... .......... .......... 225 GAAATTTGAC TAGTCTGAAT TTCCACCAAC CTCTGTTTAA GGAAGAACAA CACTTTTGAT 124562 .......... .......... .......... .......... .......... .......... 225 ATGGATTTGT CAAACCTATG GAGAAAAATT TATCACTTAC TCCGTTTCAC GAAGAATAGT 124502 .......... .......... .......... .......... .......... .......... 225 AGTTTAACTG ATTTGGAATT TAAAAAATAA AAAATGACTT TTGATCCTGT AGTGTTAAAT 124442 .......... .......... .......... .......... .......... .......... 225 TAAAATTATG TCAAATGTAC AAAATTATTT TTTAATCTTG TGGCCTTAAA CATAGTACAT 124382 .......... .......... .......... .......... .......... .......... 225 AGAAAGTTGT TACAAAAAAA AAAAAGCCTT CAACATGACA TATGAAAAGT TATTACAAAA 124322 .......... .......... .......... .......... .......... .......... 225 AAAAAGGTCA TTCTTTTAGA ACCGGACTAA AAAAAGAGCT CATTCTTTTT GAAACCGAAG 124262 .......... .......... .......... .......... .......... .......... 225 AAGTATAAAG CTAGAGGGAC TTAACTATCT TTTGTGAAGG ATTTTAATGA ATCCCTTTTG 124202 .......... .......... .......... .......... .......... .......... 225 AAAAATTACG CTAGAGTAAA CATTTGTTGT TTCTGGACTT TGGAGGGTAT AAAGATTGTG 124142 .......... .......... .......... .......... .......... .......... 225 ACTTAACTGT ACGGTGCTTG ATAGAGCTTA AACGTGTGTC ATCCAAATAT TAGTTTGGAT 124082 .......... .......... .......... .......... .......... .......... 225 ATGGTAAGAG CTAGGTTACT ATTGATGACA GGCATAAGAG TCAAACTTGC TAATTCTTAA 124022 .......... .......... .......... .......... .......... .......... 225 TTTATAATCA ATGAATCACT TTGCTGTTGT GTAACCTTTT CCTTATTTGG GTTAATTATA 123962 .......... .......... .......... .......... .......... .......... 225 ACATGTTAGT GGGGGATGTT AATTGTGGGG CTAACCACGA CAGTGCATAT TATCCATTAG 123902 .......... .......... .......... .......... .......... .......... 225 TATATTTGTC TCGATATGAT ATACTCATTT TAGTAAGGAC CAGTTTCAAG AAAGCTGGTG 123842 .......... .......... .......... .......... .......... .......... 225 TGGGGTATCC TGCCACTGGT GTTAGTTGAT GTAATACTAT TCTGTGGTGT AACTTAGGGG 123782 .......... .......... .......... .......... .......... .......... 225 TTCTTTTCTT GTTTCTGAGT TGCAAGGTCT TTTACTTGTG TGACCTTGCC AATATATATG 123722 .......... .......... .......... .......... .......... .......... 225 TTAGATGTGC GCGGACATAA TAATATCTAA CCGTATTAAA GTACTACTGC AAATACTGGA 123662 .......... .......... .......... .......... .......... .......... 225 CATAATGTTT AACATATCAA GAAAGGCTAG GTGTTGATTC TAACTAGTTG GTTACATATG 123602 .......... .......... .......... .......... .......... .......... 225 TATGGATCAT TCCTTTTCGT TGTTTTAATA AATTGAATTC GAGATTGGCT AGAAAAAAAA 123542 .......... .......... .......... .......... .......... .......... 225 AACTTCTCTT GATTATGGGA ATCCACATGG TTATTTATAG ATTGTTAATA TGTCCTGCTA 123482 .......... .......... .......... .......... .......... .......... 225 TCCTTGACTC AGGCTGATAT ATGTCATGCA TATCAACTGT TGAAGAAGGG TGGTCTCAAA 123422 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GCTGATAT ATGTCATGCA TATCAACTGT TGAAGAAGGG TGGTCTCAAA 273 GATGAGAACA TTGTTGTGTT CATGTATGAT GACATTGCAA ACAATGAAGA GAACCCAAGG 123362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGAACA TTGTTGTGTT CATGTATGAT GACATTGCAA ACAATGAAGA GAACCCAAGG 333 CAAGGAGTTA TCATTAATAG CCCTCATGGT GAGGATGTTT ACAACGGAGT ACCTAAGGTA 123302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAAGGAGTTA TCATTAATAG CCCTCATGGT GAGGATGTTT ACAACGGAGT ACCTAAG... 390 AGTTTGTTTC CGTAAATTTT ACATTTACCT AGTAATAAGT AAAACTGTTT CTGATATTGT 123242 .......... .......... .......... .......... .......... .......... 390 CTCTTGAGGC AGGATTACAT GGGGGATGAT GTTACT 123206 ||||||| |||||||||| |||||| .......... ..GATTACAC GGGGGATGAT GTTACT 414 hqPGS_C08HBa0197A05.1-_SGN-E249340+ (125160 124937,123469 123305,123229 123206) ******************************************************************************** EST sequence 74 +strand 279 n (File: SGN-E299017+) 1 AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 61 GGATCAAACG GTTATTGGAA TTACCGTCAC CAGGCTGATA TATGTCATGC ATATCAACTG 121 TTGAAGAAGG GTGGTCTCAA AGATGAGAAC ATTGTTGTGT TCATGTATGA TGACATTGCA 181 AACAATGAAG AGAACCCAAG GCAAGGAGTT ATCATTAATA GCCCTCATGG TGAGGATGTT 241 TACAACGGAG TACCTAAGGA TTACACGGNG GATGATGTT Predicted gene structure (within gDNA segment 125629 to 122494): Exon 1 125029 124937 ( 93 n); cDNA 1 93 ( 93 n); score: 1.000 Intron 1 124936 123470 (1467 n); Pd: 0.999 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 123469 123305 ( 165 n); cDNA 94 258 ( 165 n); score: 1.000 Intron 2 123304 123230 ( 75 n); Pd: 1.000 (s: 1.00), Pa: 0.897 (s: 0) Exon 3 123229 123209 ( 21 n); cDNA 259 279 ( 21 n); score: 0.905 MATCH C08HBa0197A05.1- SGN-E299017+ 1.000 279 1.000 C PGS_C08HBa0197A05.1-_SGN-E299017+ (125029 124937,123469 123305,123229 123209) Alignment (genomic DNA sequence = upper lines): AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 124970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCTTCG ATGCCGATGA GATCGACTCC GTCGGTACTA GATGGGCTAT TTTGCTTGCC 60 GGATCAAACG GTTATTGGAA TTACCGTCAC CAGGTGATTA TACGATTTAT TTGCTATTGT 124910 |||||||||| |||||||||| |||||||||| ||| GGATCAAACG GTTATTGGAA TTACCGTCAC CAG....... .......... .......... 93 TTTTTTTTTA CTTTAAATAT TTTACTTTTG AAGCGTTTTT TTTGTTTGTT TGTGATGGTT 124850 .......... .......... .......... .......... .......... .......... 93 GATGGAGGTT AATATAAGTT GATTGAATAT ATGTTTAATG TTTTTTCACC CTTATGATGA 124790 .......... .......... .......... .......... .......... .......... 93 GTGGTTCAAG TGTCAAATTA GTGGGAACGG AGCTACTGTA TAGTTTATTA CAGCTTCCAT 124730 .......... .......... .......... .......... .......... .......... 93 TGACTTTAGT ATATGCTTTT GTGAGCTAAT AAGAAACTAT ATAATATATA CTTAAATATG 124670 .......... .......... .......... .......... .......... .......... 93 TCACCATTTC TTGTCATTTG ATATGGATTT TTTTTTTGAA ATAAAATTGA AATTTGACTA 124610 .......... .......... .......... .......... .......... .......... 93 GTCTGAATTT CCACCAACCT CTGTTTAAGG AAGAACAACA CTTTTGATAT GGATTTGTCA 124550 .......... .......... .......... .......... .......... .......... 93 AACCTATGGA GAAAAATTTA TCACTTACTC CGTTTCACGA AGAATAGTAG TTTAACTGAT 124490 .......... .......... .......... .......... .......... .......... 93 TTGGAATTTA AAAAATAAAA AATGACTTTT GATCCTGTAG TGTTAAATTA AAATTATGTC 124430 .......... .......... .......... .......... .......... .......... 93 AAATGTACAA AATTATTTTT TAATCTTGTG GCCTTAAACA TAGTACATAG AAAGTTGTTA 124370 .......... .......... .......... .......... .......... .......... 93 CAAAAAAAAA AAAGCCTTCA ACATGACATA TGAAAAGTTA TTACAAAAAA AAAGGTCATT 124310 .......... .......... .......... .......... .......... .......... 93 CTTTTAGAAC CGGACTAAAA AAAGAGCTCA TTCTTTTTGA AACCGAAGAA GTATAAAGCT 124250 .......... .......... .......... .......... .......... .......... 93 AGAGGGACTT AACTATCTTT TGTGAAGGAT TTTAATGAAT CCCTTTTGAA AAATTACGCT 124190 .......... .......... .......... .......... .......... .......... 93 AGAGTAAACA TTTGTTGTTT CTGGACTTTG GAGGGTATAA AGATTGTGAC TTAACTGTAC 124130 .......... .......... .......... .......... .......... .......... 93 GGTGCTTGAT AGAGCTTAAA CGTGTGTCAT CCAAATATTA GTTTGGATAT GGTAAGAGCT 124070 .......... .......... .......... .......... .......... .......... 93 AGGTTACTAT TGATGACAGG CATAAGAGTC AAACTTGCTA ATTCTTAATT TATAATCAAT 124010 .......... .......... .......... .......... .......... .......... 93 GAATCACTTT GCTGTTGTGT AACCTTTTCC TTATTTGGGT TAATTATAAC ATGTTAGTGG 123950 .......... .......... .......... .......... .......... .......... 93 GGGATGTTAA TTGTGGGGCT AACCACGACA GTGCATATTA TCCATTAGTA TATTTGTCTC 123890 .......... .......... .......... .......... .......... .......... 93 GATATGATAT ACTCATTTTA GTAAGGACCA GTTTCAAGAA AGCTGGTGTG GGGTATCCTG 123830 .......... .......... .......... .......... .......... .......... 93 CCACTGGTGT TAGTTGATGT AATACTATTC TGTGGTGTAA CTTAGGGGTT CTTTTCTTGT 123770 .......... .......... .......... .......... .......... .......... 93 TTCTGAGTTG CAAGGTCTTT TACTTGTGTG ACCTTGCCAA TATATATGTT AGATGTGCGC 123710 .......... .......... .......... .......... .......... .......... 93 GGACATAATA ATATCTAACC GTATTAAAGT ACTACTGCAA ATACTGGACA TAATGTTTAA 123650 .......... .......... .......... .......... .......... .......... 93 CATATCAAGA AAGGCTAGGT GTTGATTCTA ACTAGTTGGT TACATATGTA TGGATCATTC 123590 .......... .......... .......... .......... .......... .......... 93 CTTTTCGTTG TTTTAATAAA TTGAATTCGA GATTGGCTAG AAAAAAAAAA CTTCTCTTGA 123530 .......... .......... .......... .......... .......... .......... 93 TTATGGGAAT CCACATGGTT ATTTATAGAT TGTTAATATG TCCTGCTATC CTTGACTCAG 123470 .......... .......... .......... .......... .......... .......... 93 GCTGATATAT GTCATGCATA TCAACTGTTG AAGAAGGGTG GTCTCAAAGA TGAGAACATT 123410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATATAT GTCATGCATA TCAACTGTTG AAGAAGGGTG GTCTCAAAGA TGAGAACATT 153 GTTGTGTTCA TGTATGATGA CATTGCAAAC AATGAAGAGA ACCCAAGGCA AGGAGTTATC 123350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTCA TGTATGATGA CATTGCAAAC AATGAAGAGA ACCCAAGGCA AGGAGTTATC 213 ATTAATAGCC CTCATGGTGA GGATGTTTAC AACGGAGTAC CTAAGGTAAG TTTGTTTCCG 123290 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTAATAGCC CTCATGGTGA GGATGTTTAC AACGGAGTAC CTAAG..... .......... 258 TAAATTTTAC ATTTACCTAG TAATAAGTAA AACTGTTTCT GATATTGTCT CTTGAGGCAG 123230 .......... .......... .......... .......... .......... .......... 258 GATTACATGG GGGATGATGT T 123209 ||||||| || ||||||||| | GATTACACGG NGGATGATGT T 279 hqPGS_C08HBa0197A05.1-_SGN-E299017+ (125029 124937,123469 123305,123229 123209) ******************************************************************************** EST sequence 90 +strand 193 n (File: SGN-E333945+) 1 AGAGAACTAG TCTCTTGTTT TTTTAATTGT ATTATCGGAG CTCGGATAAT GAATCGTTCC 61 GTCGCCGGAG TTTTGTTCCT GATTGCGCTC TCGTTAAACG TCTCCGTTTC CGAGAGCCGT 121 AATTTTTTGA AACTTCCGTC TGAAGGTTCT AGATTCTTCG ATGCCGATGA GATCGACTCC 181 GTCGGTACTA GAT Predicted gene structure (within gDNA segment 125878 to 124377): Exon 1 125175 124987 ( 189 n); cDNA 5 193 ( 189 n); score: 0.984 MATCH C08HBa0197A05.1- SGN-E333945+ 0.984 189 0.979 C PGS_C08HBa0197A05.1-_SGN-E333945+ (125175 124987) Alignment (genomic DNA sequence = upper lines): AACAACACTC TTGTTTTTTT AATTGTATTA TCGGAGCTCG GATAATGAAT CGTTCCGTCG 125116 ||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAGTCTC TTGTTTTTTT AATTGTATTA TCGGAGCTCG GATAATGAAT CGTTCCGTCG 64 CCGGAGTTTT GTTCCTGATT GCGCTCTCGT TAAACGTCTC CGTTTCCGAG AGCCGTAATT 125056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGTTTT GTTCCTGATT GCGCTCTCGT TAAACGTCTC CGTTTCCGAG AGCCGTAATT 124 TTTTGAAACT TCCGTCTGAA GGTTCTAGAT TCTTCGATGC CGATGAGATC GACTCCGTCG 124996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGAAACT TCCGTCTGAA GGTTCTAGAT TCTTCGATGC CGATGAGATC GACTCCGTCG 184 GTACTAGAT 124987 ||||||||| GTACTAGAT 193 hqPGS_C08HBa0197A05.1-_SGN-E333945+ (125175 124987) ******************************************************************************** EST sequence 18 -strand 693 n (File: SGN-E395471-) 1 TTTTGTTATT CATTAAAGTG GAGCAAGTGC AAGGTCAACT ATGGTAAAGA TCAATGAAGT 61 ACTTAATGAC TTGCATGAGA CTAGCTAGCA TACTTTAGAG AAAGAGGGTA TCATATCATG 121 GGTAAGCTCA TAGGGGCATC ATGAGGACCA CCTTTAGGGA AAATGCCAAA ATACTTTTTT 181 GTTCACTTAA TCTTTTATTT TAGTAAGGAC ATCTTTTCGA CCATTCTTTG TCATGAGGGG 241 TTACAAAAAC ACTAAAATAG ATCTGAGGAA ATAGTTTTTT TCCATTCAGC GCAAGTAATA 301 ATTAGCTTGT TGGGCACAAA TTATATTTTA GTATCTGCAA ATAGGAAAAA TTACATGAAT 361 AAATTCATTT TTAAAAATAA TTATTGATTT TAGCGATATT TTTTTATTTA TTATCATTTA 421 TAACAATATT GTGATAAATA TGTATTAAAA GTGAATTATG TTTGCAATAT ATTTGAGTTA 481 TAATTGTTTT TTGAAATATA TTATGTTTGT TTGGTAAGAA ATTGTCACAT TGTATTATAA 541 GTTTATTAAA ACGTGTGATA AATGTATTAT CTATCAATTA AACTTGTATT ATATTTGATC 601 AATAAATTTA TCTTTGTAGT ATGTATTAAA CTTGCATTAT AATGTATTAA ATGTAGTCAA 661 GTAAAAAAAA ATTATTATTA TAAAAAAAAA AAA Predicted gene structure (within gDNA segment 132974 to 126611): Exon 1 129920 129911 ( 10 n); cDNA 265 274 ( 10 n); score: 0.800 Intron 1 129910 129097 ( 814 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.69) Exon 2 129096 129055 ( 42 n); cDNA 275 312 ( 38 n); score: 0.690 Intron 2 129054 128706 ( 349 n); Pd: 0.000 (s: 0.69), Pa: 0.713 (s: 0.56) Exon 3 128705 128316 ( 390 n); cDNA 313 693 ( 381 n); score: 0.787 MATCH C08HBa0197A05.1- SGN-E395471- 0.787 442 0.638 C PGS_C08HBa0197A05.1-_SGN-E395471- (129920 129911,129096 129055,128705 128316) Alignment (genomic DNA sequence = upper lines): GAGGAGAGAG GCGAACGATA TTGGAGGAGA GAGAGGGAGC AAAAAGTGGG AGAAAAGTGA 129861 ||||| | || GAGGAAATAG .......... .......... .......... .......... .......... 274 ATTGTATATG TATATCGGTT AGATAATTGT ATGTTCTACA TATGTATCTG TATATATGAC 129801 .......... .......... .......... .......... .......... .......... 274 AAGTGAGATT GGGAGAAGGA GGAGAGAGGC GGGCGAGAGA GAGCAGAGTG TGACAGAGAT 129741 .......... .......... .......... .......... .......... .......... 274 GTGAATTTTA TATGTATATC GGATAGATAA ATTATATATA ATACATATGC ATTTGTATAT 129681 .......... .......... .......... .......... .......... .......... 274 ATGGAAAGCG AGATTGGGAG AGAGAGGAGA CAGACGTCGA GATTGGGAGA GGGAGGAGAG 129621 .......... .......... .......... .......... .......... .......... 274 GCGAGCGAGA GAGGGCAAAG AGTGGGAGAG AGGCGAATTG TATATGCATA TCGATTAGAT 129561 .......... .......... .......... .......... .......... .......... 274 AATTGTATAT TATACATATG TATTTGTATA TTTTGGCGAA TTATACTATA TAAATGTGAC 129501 .......... .......... .......... .......... .......... .......... 274 TAATTATACA AATTCGAAGT GAGCTCATGT AATTAATGTA TAATGTTAAT CGTGAATGAT 129441 .......... .......... .......... .......... .......... .......... 274 AATTATAGCA AATTATAACT ATGATGAATA ATTAAATAGT ATAAATTTGC TTAACCGCTT 129381 .......... .......... .......... .......... .......... .......... 274 AATTTGCTGT TTTAAAACTC CCATTTGCTT TGAAACGCTA TTTACGCCGT GAAATGGTAT 129321 .......... .......... .......... .......... .......... .......... 274 CTTTACCCTC AAACATCTTA CGCTATGTGA TAATTGTTTC ACGTGAATAA GGTAAAAGAA 129261 .......... .......... .......... .......... .......... .......... 274 ATGAAGAAAA TGACATAAAT TCATAATAAA GGCGAAATCA AATTTTGTAT TATATGCTTT 129201 .......... .......... .......... .......... .......... .......... 274 TCGAATTTAA AAATGTCATT AAACTTAATA TTTATACCTA TTTAATGAAT TTTTTAATAT 129141 .......... .......... .......... .......... .......... .......... 274 AAATACACTG TTTAAATTAA CTGAATTCAT ATATGTATTT CTAGTTTCGC TCTTATTCAC 129081 ||| || ||||| .......... .......... .......... .......... ....TTTTTT TC-CATTCA- 288 GACAAAGTGA ATATATTAGC TTGTCTTTGC TTTGATCCTT CACTTTAATT GTTTTTATCT 129021 | |||| | ||| |||||| |||| GCGCAAGT-A ATA-ATTAGC TTGTTG.... .......... .......... .......... 312 TTCTACTATT ATACCTACTT ATTATATTTA TTTTCAATTT ATAATCATCT TAGGTATCTT 128961 .......... .......... .......... .......... .......... .......... 312 TTTCTTTGGG GTAGAAAAAG GGAAAGAATA AAAACTTGGT TTGGAAGGAA GGTATGAAAG 128901 .......... .......... .......... .......... .......... .......... 312 AGGTAAAAAG GAAAAAATGA ATATTTATTC AGTTACAGTA TAATATCACC TTTTTTTTAA 128841 .......... .......... .......... .......... .......... .......... 312 TTCCTCTTTT TGACTTGTTA CATAACTTTA AAATTTATGA TATCAACAGA AATGAAGCAT 128781 .......... .......... .......... .......... .......... .......... 312 ATATAATAAA TATAATATAA ACATAATTTT ATTGGTTATT GTTGCTTAAT CCTTGATGAC 128721 .......... .......... .......... .......... .......... .......... 312 TTTGTTTTTC ACTAGAATAA AGAAGATACT TAACTAAAAC GTTAAAGGAA AAAATGCATA 128661 | | | ||| | | | || | ||||| ||| | ||| .......... .....GGCAC AAATTATATT TTAGTATCTG CAAATAGGAA AAATTACATG 357 AATTAATGTT TTTTTAAAAA ATAATTATTG ATTTTAGCGA TA-TCTTTTA TTTATTATCA 128602 ||| ||| | |||| |||| |||||||||| |||||||||| || | ||||| |||||||||| AATAAAT-TC ATTTTTAAAA ATAATTATTG ATTTTAGCGA TATTTTTTTA TTTATTATCA 416 TTTATATTAA TGTTTTATTA AATCTGTAAT ATGTATTTAA AGTGAATTAT ATATGCAATA 128542 |||||| || | || | || ||| ||| || | | || |||||||||| | ||||||| TTTATAACAA TATTGTGATA AATATGT-AT -T--A---AA AGTGAATTAT GTTTGCAATA 469 TATATGAATT ATAATTG-TT TTTGAAATAT ATTATGTTTG TTTGATAAAA AAATTGTCAC 128483 ||| ||| || ||||||| || |||||||||| |||||||||| |||| | || |||||||||| TATTTGAGTT ATAATTGTTT TTTGAAATAT ATTATGTTTG TTTGGT-AAG AAATTGTCAC 528 ATTGTATTAT AAGTATATTA AAATATGTGA TAAATGTATT ATTTATCATT AAAATTTGTA 128423 |||||||||| |||| ||||| ||| ||||| |||||||||| || ||||| | ||| ||||| ATTGTATTAT AAGTTTATTA AAACGTGTGA TAAATGTATT ATCTATCAAT TAAACTTGTA 588 TTATATGTAA ATAATAAATT ATTCTTTAAT AATATGTATT AAACTTGTAT TATAAATGAA 128363 |||||| | | |||||||| ||||| | | |||||||| ||||||| || ||| |||| | TTATATTTGA TCAATAAATT TATCTTT-GT AGTATGTATT AAACTTGCAT TAT-AATGTA 646 TTAAAAGTGA TTAAATAAAA AAATATTATT ATTATTATAA ATAGTAA 128316 ||||| || | || ||||| ||| |||||| ||||| | || | | || TTAAATGTAG TCAAGTAAAA AAAAATTATT ATTATAAAAA AAAAAAA 693 hqPGS_C08HBa0197A05.1-_SGN-E395471- (128705 128316) ******************************************************************************** EST sequence 14 +strand 606 n (File: SGN-E392579+) 1 AAAGAAAAGA CCCACTACAA ACACTCTCAA AAAATTCCCA AAACTACCTT TTTCATAAAA 61 CTATCCTTTA GACATTGTAA AAAGATTTTC AGATTTTGGT TCTTTAAGTA TTTTTTTTTT 121 GTTTAAAGAA AGCTTGGAAG TTTTCGGGTT TCCCGAAAGG GAAACTTCAC TCTGTTCTTA 181 TAATAGACAT CGCTAAACAG GACTGCGATA GCCTAGACTG TGGGTTATAT GTTACTACAT 241 TTGCCGAGTA TATGAGTGAC CAAATCAATA TATCATATGC TGATTTTAGT CATGATTACC 301 TACGTCAAAG ATATGGAGCA TTGCTGTGGA GTTATGGAAG CGAGAAGGCT AAGTGCGGAT 361 ATGTTAGTGA CAATGATTAT CCACCAAAAT CTAGGGGCGT AGTCACACCA CAACCAGAAG 421 AAGATTTAGT TCACATAGTT AATGTTGATT AATGATCTGT TACCGTAAAT TAAGCTGTTT 481 TAGTTAACAA GTTTAAATGT TCCATTTTTC CCCATTTTTT TTTCTTAACA AGTTGACCAG 541 AACATTCATT TGTTGCTTTA TAAAAAACAT TTAAAAAATC AATCAGTTCT TTTGTAAAAA 601 AAAAAA Predicted gene structure (within gDNA segment 128834 to 135545): Exon 1 132293 132312 ( 20 n); cDNA 419 436 ( 18 n); score: 0.750 Intron 1 132313 133811 (1499 n); Pd: 0.983 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 133812 133919 ( 108 n); cDNA 437 545 ( 109 n); score: 0.819 PPA cDNA 596 606 MATCH C08HBa0197A05.1+ SGN-E392579+ 0.819 128 0.211 C PGS_C08HBa0197A05.1+_SGN-E392579+ (132293 132312,133812 133919) Alignment (genomic DNA sequence = upper lines): AGAAAATTAT AGAAACACAT GCAAATACAT ATATCTTTGT CATATACATT TATAATTATA 132352 |||| ||| | || ||||| AGAAGATT-T AG-TTCACAT .......... .......... .......... .......... 436 CAATATAAAT ATTCTCCTAC TCAATTTTCT TTTGTGTTTT CTCTCTTTCT TGTTTTAAAC 132412 .......... .......... .......... .......... .......... .......... 436 AAACACAAAT TATACGATTG ATCTTTTTTA TATGTATATC GAAACAAAAA TAATATATAT 132472 .......... .......... .......... .......... .......... .......... 436 ACAACTATTT TTTTTGTATA TGTATATCGA AATATACGTA TTTATGTTTG ATTAAGTACA 132532 .......... .......... .......... .......... .......... .......... 436 ATTATTCAAA TTATAGTTAT ATAATACAAA TAAAATTTTT GTGTTTGTTA TATATGAGAG 132592 .......... .......... .......... .......... .......... .......... 436 TTGCTCAACT AAAGTAGTTG CTTCAATTTA CTTGTCCATC TTATGAAATT AAGATGATTC 132652 .......... .......... .......... .......... .......... .......... 436 TACTATATTT TTCTCTTTCT ATAGTATTCC ATATATATTA TTTTTATTTT TTAAAATAAA 132712 .......... .......... .......... .......... .......... .......... 436 AATCATAAAA GTTTGGTTTC TCAATATACG GATATTATAT TTTTCTCTTT CTATAGTATT 132772 .......... .......... .......... .......... .......... .......... 436 CCATATATAT TATTTTTATT TTTTAAAATA AAAATCATAA AAGTTTGGTT TCTCTCCCGT 132832 .......... .......... .......... .......... .......... .......... 436 TCTTATTGTT CTTCTTACTC CATCACGTCT TCAATTCTTC TTACTGCATC ATCGTCTTTC 132892 .......... .......... .......... .......... .......... .......... 436 TTCTTCTTAA CCCAGCATCT GTTATTGATT TCTTTTTTTT CTTATTATTC CATCATCAGT 132952 .......... .......... .......... .......... .......... .......... 436 TCTTCTTTTC TTCCTTTTTT TGTTTTGGTT AATTGTTCTA TTACATCATA GTAATGGATC 133012 .......... .......... .......... .......... .......... .......... 436 CGTTAATTAA TAGAAGGATA TATGATTCCG ACGATGAAAA TTGGAAAGAA AATAGAAAAA 133072 .......... .......... .......... .......... .......... .......... 436 AGTCTTTGCA TGATCATATG AATCTTCAGA AGGATTCAAA CAAAGACTCT GGCGAAACAT 133132 .......... .......... .......... .......... .......... .......... 436 CAAAATCAAA GGTTGTCAAA ATACAACAAA AAAAAAAAGA AAAAAGAAGC AGCAAACATT 133192 .......... .......... .......... .......... .......... .......... 436 GTTGTCAGGC TTACATTGTT TTGGGTTTGT ATTTTTATAC TTATTTTAAA ATTGTTGTTG 133252 .......... .......... .......... .......... .......... .......... 436 AAATAAGAAA AAAAAAATTA AGGAATCCAA TATGTATCAA AAAATTATGA AAATTATTAT 133312 .......... .......... .......... .......... .......... .......... 436 CATGTATCAG ATAATAGGTT TAATACATAA GTACTAAGTG GATTATAATG TTTAGTCTAT 133372 .......... .......... .......... .......... .......... .......... 436 GATTTGATAC ATGAATTAGA TGTGTATCAA GGGTTTTTGA ATTTTTTTTA TCATGTATCA 133432 .......... .......... .......... .......... .......... .......... 436 GTGATTAATT TCAATAATTG CGCCATCAAG TGTGCTTGTT GATACATTTT GAATCGTGTG 133492 .......... .......... .......... .......... .......... .......... 436 TATAGTGTTT TAGACGATGC ATTGATACAT GAAGTGTTTG CTGATACATT TTGAATCAGT 133552 .......... .......... .......... .......... .......... .......... 436 GTGCTTGCTG ATATATTTTG AATCCATCAA GTGTGTATAG TGTTTTAGAT GATGCATTGA 133612 .......... .......... .......... .......... .......... .......... 436 TACATTTTGA ATCCATCAAG TGTGCTTGCT GATACGTTTT GAATCAGTGT GTATAGTGTT 133672 .......... .......... .......... .......... .......... .......... 436 TTAGACGATG CATTGATACA TGAATTTGTT GTGTATCATA ATGTTTTCTA TGTATCATGC 133732 .......... .......... .......... .......... .......... .......... 436 GGTTTTGAAA ATTGTATTCA AAATAGATGA TATAATCTTT GATTTTCAAA ATTTGAAATT 133792 .......... .......... .......... .......... .......... .......... 436 AATATTCAAT TACGTGCTAA TTTAATGTTG ATTAATGATC CGTTACCGTA AATTAAGCTA 133852 | ||||||||| |||||||||| ||||||||| ||||||||| .......... .........A GTTAATGTTG ATTAATGATC TGTTACCGTA AATTAAGCTG 477 TTTTAGTTAA CAAGTTTAAA TG-TACTGTT TTCCCCCCAT TTTTTTCTTA ACAGTTTAAA 133911 |||||||||| |||||||||| || | | || |||||| | |||||||||| ||| || | TTTTAGTTAA CAAGTTTAAA TGTTCCATTT TTCCCCATTT TTTTTTCTTA ACAAGTTGAC 537 TTTACCAT 133919 | ||| CAGAACAT 545 hqPGS_C08HBa0197A05.1+_SGN-E392579+ (133812 133919) ******************************************************************************** EST sequence 16 +strand 605 n (File: SGN-E397911+) 1 AAAGAAAAGA CCCACTACAA ACACTCTCAA AAAATTCCCA AAACTACCTT TTTCATAAAA 61 CTATCCTTTA GACATTGTAA AAAGATTTTC AGATTTTGGT TCTTTAAGTA TTTTTTTTTT 121 GTTTAAAGAA AGCTTGGAAG TTTTCGGGTT TCCCGAAAGG GAAACTTCAC TCTGTTCTTA 181 TAATAGACAT CGCTAAACAG GACTGCGATA GCCTAGACTG TGGGTTATAT GTTACTACAT 241 TTGCCGAGTA TATGAGTGAC CAAATCAATA TATCATATGC TGATTTTAGT CATGATTACC 301 TACGTCAAAG ATATGGAGCA TTGCTGTGGA GTTATGGAAG CGAGAAGGCT AAGTGCGGAT 361 ATGTTAGTGA CAATGATTAT CCACCAAAAT CTAGGGGCGT AGTCACACCA CAACCAGAAG 421 AAGATTTAGT TCACATAGTT AATGTTGATT AATGATCTGT TACCGTAAAT TAAGCTGTTT 481 TAGTTAACAA GTTTAAATGT TCCATTTTTC CCCATTTTTT TTTCTTAACA AGTTGACCAG 541 AACATTCATT TGTTGCTTTA TAAAAAACAT TTAAAAAATC AATCAGTTCT TTTGTAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 128834 to 135535): Exon 1 132293 132312 ( 20 n); cDNA 419 436 ( 18 n); score: 0.750 Intron 1 132313 133811 (1499 n); Pd: 0.983 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 133812 133919 ( 108 n); cDNA 437 545 ( 109 n); score: 0.819 PPA cDNA 596 605 MATCH C08HBa0197A05.1+ SGN-E397911+ 0.819 128 0.212 C PGS_C08HBa0197A05.1+_SGN-E397911+ (132293 132312,133812 133919) Alignment (genomic DNA sequence = upper lines): AGAAAATTAT AGAAACACAT GCAAATACAT ATATCTTTGT CATATACATT TATAATTATA 132352 |||| ||| | || ||||| AGAAGATT-T AG-TTCACAT .......... .......... .......... .......... 436 CAATATAAAT ATTCTCCTAC TCAATTTTCT TTTGTGTTTT CTCTCTTTCT TGTTTTAAAC 132412 .......... .......... .......... .......... .......... .......... 436 AAACACAAAT TATACGATTG ATCTTTTTTA TATGTATATC GAAACAAAAA TAATATATAT 132472 .......... .......... .......... .......... .......... .......... 436 ACAACTATTT TTTTTGTATA TGTATATCGA AATATACGTA TTTATGTTTG ATTAAGTACA 132532 .......... .......... .......... .......... .......... .......... 436 ATTATTCAAA TTATAGTTAT ATAATACAAA TAAAATTTTT GTGTTTGTTA TATATGAGAG 132592 .......... .......... .......... .......... .......... .......... 436 TTGCTCAACT AAAGTAGTTG CTTCAATTTA CTTGTCCATC TTATGAAATT AAGATGATTC 132652 .......... .......... .......... .......... .......... .......... 436 TACTATATTT TTCTCTTTCT ATAGTATTCC ATATATATTA TTTTTATTTT TTAAAATAAA 132712 .......... .......... .......... .......... .......... .......... 436 AATCATAAAA GTTTGGTTTC TCAATATACG GATATTATAT TTTTCTCTTT CTATAGTATT 132772 .......... .......... .......... .......... .......... .......... 436 CCATATATAT TATTTTTATT TTTTAAAATA AAAATCATAA AAGTTTGGTT TCTCTCCCGT 132832 .......... .......... .......... .......... .......... .......... 436 TCTTATTGTT CTTCTTACTC CATCACGTCT TCAATTCTTC TTACTGCATC ATCGTCTTTC 132892 .......... .......... .......... .......... .......... .......... 436 TTCTTCTTAA CCCAGCATCT GTTATTGATT TCTTTTTTTT CTTATTATTC CATCATCAGT 132952 .......... .......... .......... .......... .......... .......... 436 TCTTCTTTTC TTCCTTTTTT TGTTTTGGTT AATTGTTCTA TTACATCATA GTAATGGATC 133012 .......... .......... .......... .......... .......... .......... 436 CGTTAATTAA TAGAAGGATA TATGATTCCG ACGATGAAAA TTGGAAAGAA AATAGAAAAA 133072 .......... .......... .......... .......... .......... .......... 436 AGTCTTTGCA TGATCATATG AATCTTCAGA AGGATTCAAA CAAAGACTCT GGCGAAACAT 133132 .......... .......... .......... .......... .......... .......... 436 CAAAATCAAA GGTTGTCAAA ATACAACAAA AAAAAAAAGA AAAAAGAAGC AGCAAACATT 133192 .......... .......... .......... .......... .......... .......... 436 GTTGTCAGGC TTACATTGTT TTGGGTTTGT ATTTTTATAC TTATTTTAAA ATTGTTGTTG 133252 .......... .......... .......... .......... .......... .......... 436 AAATAAGAAA AAAAAAATTA AGGAATCCAA TATGTATCAA AAAATTATGA AAATTATTAT 133312 .......... .......... .......... .......... .......... .......... 436 CATGTATCAG ATAATAGGTT TAATACATAA GTACTAAGTG GATTATAATG TTTAGTCTAT 133372 .......... .......... .......... .......... .......... .......... 436 GATTTGATAC ATGAATTAGA TGTGTATCAA GGGTTTTTGA ATTTTTTTTA TCATGTATCA 133432 .......... .......... .......... .......... .......... .......... 436 GTGATTAATT TCAATAATTG CGCCATCAAG TGTGCTTGTT GATACATTTT GAATCGTGTG 133492 .......... .......... .......... .......... .......... .......... 436 TATAGTGTTT TAGACGATGC ATTGATACAT GAAGTGTTTG CTGATACATT TTGAATCAGT 133552 .......... .......... .......... .......... .......... .......... 436 GTGCTTGCTG ATATATTTTG AATCCATCAA GTGTGTATAG TGTTTTAGAT GATGCATTGA 133612 .......... .......... .......... .......... .......... .......... 436 TACATTTTGA ATCCATCAAG TGTGCTTGCT GATACGTTTT GAATCAGTGT GTATAGTGTT 133672 .......... .......... .......... .......... .......... .......... 436 TTAGACGATG CATTGATACA TGAATTTGTT GTGTATCATA ATGTTTTCTA TGTATCATGC 133732 .......... .......... .......... .......... .......... .......... 436 GGTTTTGAAA ATTGTATTCA AAATAGATGA TATAATCTTT GATTTTCAAA ATTTGAAATT 133792 .......... .......... .......... .......... .......... .......... 436 AATATTCAAT TACGTGCTAA TTTAATGTTG ATTAATGATC CGTTACCGTA AATTAAGCTA 133852 | ||||||||| |||||||||| ||||||||| ||||||||| .......... .........A GTTAATGTTG ATTAATGATC TGTTACCGTA AATTAAGCTG 477 TTTTAGTTAA CAAGTTTAAA TG-TACTGTT TTCCCCCCAT TTTTTTCTTA ACAGTTTAAA 133911 |||||||||| |||||||||| || | | || |||||| | |||||||||| ||| || | TTTTAGTTAA CAAGTTTAAA TGTTCCATTT TTCCCCATTT TTTTTTCTTA ACAAGTTGAC 537 TTTACCAT 133919 | ||| CAGAACAT 545 hqPGS_C08HBa0197A05.1+_SGN-E397911+ (133812 133919) ******************************************************************************** EST sequence 61 -strand 453 n (File: SGN-E392202-) 1 CGAAAGGGAA ATTTCACTCT GTTTTTATAA TAGACATCGT TAAACAGGAT TGCGATAGCC 61 TAGACTGTGG GTTATATGTT ACTACATTTG CCGAGTATAT GAGTGACCAA ATCAATATAT 121 CATATGCTGA TTTTAGTCAT GATTACCTAC GTCAAAGATA TGGAGCATTG CTGTGGAGTT 181 ATGGAAGCGA GAAGGCTAAG TGCGGATATG TTAGTGACAA TGATTATCCA CCAAAATTTA 241 GGGGCGTAGT CACACCACAA CCAGAAGAAG ATTTAGTTCA CATAGTTAAT GTTGATTAAT 301 GATCTGTTAC CGTAAATTAA GCTGTTTTAG TTAACAAGTT TAAATGTTCC ATTTTTCCCC 361 ATTTTTTTTT CTTAACAAGT TGACCAGAAC ATTCATTTGT TGCTTTATAA AAAACATTTA 421 AAAAATCAAT CAGTTGTTTT GTAAAAAAAA AAA Predicted gene structure (within gDNA segment 130354 to 135535): Exon 1 132293 132312 ( 20 n); cDNA 266 283 ( 18 n); score: 0.750 Intron 1 132313 133811 (1499 n); Pd: 0.983 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 133812 133919 ( 108 n); cDNA 284 392 ( 109 n); score: 0.819 PPA cDNA 443 453 MATCH C08HBa0197A05.1+ SGN-E392202- 0.819 128 0.283 C PGS_C08HBa0197A05.1+_SGN-E392202- (132293 132312,133812 133919) Alignment (genomic DNA sequence = upper lines): AGAAAATTAT AGAAACACAT GCAAATACAT ATATCTTTGT CATATACATT TATAATTATA 132352 |||| ||| | || ||||| AGAAGATT-T AG-TTCACAT .......... .......... .......... .......... 283 CAATATAAAT ATTCTCCTAC TCAATTTTCT TTTGTGTTTT CTCTCTTTCT TGTTTTAAAC 132412 .......... .......... .......... .......... .......... .......... 283 AAACACAAAT TATACGATTG ATCTTTTTTA TATGTATATC GAAACAAAAA TAATATATAT 132472 .......... .......... .......... .......... .......... .......... 283 ACAACTATTT TTTTTGTATA TGTATATCGA AATATACGTA TTTATGTTTG ATTAAGTACA 132532 .......... .......... .......... .......... .......... .......... 283 ATTATTCAAA TTATAGTTAT ATAATACAAA TAAAATTTTT GTGTTTGTTA TATATGAGAG 132592 .......... .......... .......... .......... .......... .......... 283 TTGCTCAACT AAAGTAGTTG CTTCAATTTA CTTGTCCATC TTATGAAATT AAGATGATTC 132652 .......... .......... .......... .......... .......... .......... 283 TACTATATTT TTCTCTTTCT ATAGTATTCC ATATATATTA TTTTTATTTT TTAAAATAAA 132712 .......... .......... .......... .......... .......... .......... 283 AATCATAAAA GTTTGGTTTC TCAATATACG GATATTATAT TTTTCTCTTT CTATAGTATT 132772 .......... .......... .......... .......... .......... .......... 283 CCATATATAT TATTTTTATT TTTTAAAATA AAAATCATAA AAGTTTGGTT TCTCTCCCGT 132832 .......... .......... .......... .......... .......... .......... 283 TCTTATTGTT CTTCTTACTC CATCACGTCT TCAATTCTTC TTACTGCATC ATCGTCTTTC 132892 .......... .......... .......... .......... .......... .......... 283 TTCTTCTTAA CCCAGCATCT GTTATTGATT TCTTTTTTTT CTTATTATTC CATCATCAGT 132952 .......... .......... .......... .......... .......... .......... 283 TCTTCTTTTC TTCCTTTTTT TGTTTTGGTT AATTGTTCTA TTACATCATA GTAATGGATC 133012 .......... .......... .......... .......... .......... .......... 283 CGTTAATTAA TAGAAGGATA TATGATTCCG ACGATGAAAA TTGGAAAGAA AATAGAAAAA 133072 .......... .......... .......... .......... .......... .......... 283 AGTCTTTGCA TGATCATATG AATCTTCAGA AGGATTCAAA CAAAGACTCT GGCGAAACAT 133132 .......... .......... .......... .......... .......... .......... 283 CAAAATCAAA GGTTGTCAAA ATACAACAAA AAAAAAAAGA AAAAAGAAGC AGCAAACATT 133192 .......... .......... .......... .......... .......... .......... 283 GTTGTCAGGC TTACATTGTT TTGGGTTTGT ATTTTTATAC TTATTTTAAA ATTGTTGTTG 133252 .......... .......... .......... .......... .......... .......... 283 AAATAAGAAA AAAAAAATTA AGGAATCCAA TATGTATCAA AAAATTATGA AAATTATTAT 133312 .......... .......... .......... .......... .......... .......... 283 CATGTATCAG ATAATAGGTT TAATACATAA GTACTAAGTG GATTATAATG TTTAGTCTAT 133372 .......... .......... .......... .......... .......... .......... 283 GATTTGATAC ATGAATTAGA TGTGTATCAA GGGTTTTTGA ATTTTTTTTA TCATGTATCA 133432 .......... .......... .......... .......... .......... .......... 283 GTGATTAATT TCAATAATTG CGCCATCAAG TGTGCTTGTT GATACATTTT GAATCGTGTG 133492 .......... .......... .......... .......... .......... .......... 283 TATAGTGTTT TAGACGATGC ATTGATACAT GAAGTGTTTG CTGATACATT TTGAATCAGT 133552 .......... .......... .......... .......... .......... .......... 283 GTGCTTGCTG ATATATTTTG AATCCATCAA GTGTGTATAG TGTTTTAGAT GATGCATTGA 133612 .......... .......... .......... .......... .......... .......... 283 TACATTTTGA ATCCATCAAG TGTGCTTGCT GATACGTTTT GAATCAGTGT GTATAGTGTT 133672 .......... .......... .......... .......... .......... .......... 283 TTAGACGATG CATTGATACA TGAATTTGTT GTGTATCATA ATGTTTTCTA TGTATCATGC 133732 .......... .......... .......... .......... .......... .......... 283 GGTTTTGAAA ATTGTATTCA AAATAGATGA TATAATCTTT GATTTTCAAA ATTTGAAATT 133792 .......... .......... .......... .......... .......... .......... 283 AATATTCAAT TACGTGCTAA TTTAATGTTG ATTAATGATC CGTTACCGTA AATTAAGCTA 133852 | ||||||||| |||||||||| ||||||||| ||||||||| .......... .........A GTTAATGTTG ATTAATGATC TGTTACCGTA AATTAAGCTG 324 TTTTAGTTAA CAAGTTTAAA TG-TACTGTT TTCCCCCCAT TTTTTTCTTA ACAGTTTAAA 133911 |||||||||| |||||||||| || | | || |||||| | |||||||||| ||| || | TTTTAGTTAA CAAGTTTAAA TGTTCCATTT TTCCCCATTT TTTTTTCTTA ACAAGTTGAC 384 TTTACCAT 133919 | ||| CAGAACAT 392 hqPGS_C08HBa0197A05.1+_SGN-E392202- (133812 133919) ******************************************************************************** EST sequence 63 -strand 609 n (File: SGN-E392422-) 1 AAAGAAAAGA CCCACTCAAG ACATTCTTCA AAAAATTCCC AAAACTACCT TTTTTATAAA 61 ACTATCCTTT AGACATTGTA AAAAGGATTT TCAGATTTTG GGTTCTTTAA GTATTTTTTT 121 TTTTGTTTAA AGAAAGCTTG GAAGTTTTCG GGTTTCCCGA AAGGGAAACT TCACTGTGTT 181 TTTATAATAG ACATCGGTAA ACAGGAGTGC GATAGCCTAG ACTGTGGGTT ATATGTTAGT 241 ACATTTGCCG AGTATATGAG TGACCAAATC AATATATCAT ATGTTGATTT TAGTCATGAT 301 TACCTACGTC AAAGATATGG AGCATTGGTG TGGAGTTATG GAAGGGAGAA GGCTAAGTGC 361 GGATATGTTA GGGACAATGA TTATCCACCA AAATCTAGGG GGGTAGTCAC ACCACAACCA 421 GAAGAAGATT TAGTTCACAT AGTTAATGTT GATTAATGAT CTGTTACCGT AAATTAAGCT 481 GTTTTAGTTA ACAAGTTTAA ATGTTCCATT TTTCCCCATT TTTTTTTCTT AACAAGTTGA 541 CCAGAACATT CATTTGTTGC TTTATAAAAA ACATTTAAAA AATCAATCAG TTCGTTGAAA 601 AAAAAAAAA Predicted gene structure (within gDNA segment 128784 to 135525): Exon 1 132293 132312 ( 20 n); cDNA 423 440 ( 18 n); score: 0.750 Intron 1 132313 133811 (1499 n); Pd: 0.983 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 133812 133919 ( 108 n); cDNA 441 549 ( 109 n); score: 0.819 PPA cDNA 598 609 MATCH C08HBa0197A05.1+ SGN-E392422- 0.819 128 0.210 C PGS_C08HBa0197A05.1+_SGN-E392422- (132293 132312,133812 133919) Alignment (genomic DNA sequence = upper lines): AGAAAATTAT AGAAACACAT GCAAATACAT ATATCTTTGT CATATACATT TATAATTATA 132352 |||| ||| | || ||||| AGAAGATT-T AG-TTCACAT .......... .......... .......... .......... 440 CAATATAAAT ATTCTCCTAC TCAATTTTCT TTTGTGTTTT CTCTCTTTCT TGTTTTAAAC 132412 .......... .......... .......... .......... .......... .......... 440 AAACACAAAT TATACGATTG ATCTTTTTTA TATGTATATC GAAACAAAAA TAATATATAT 132472 .......... .......... .......... .......... .......... .......... 440 ACAACTATTT TTTTTGTATA TGTATATCGA AATATACGTA TTTATGTTTG ATTAAGTACA 132532 .......... .......... .......... .......... .......... .......... 440 ATTATTCAAA TTATAGTTAT ATAATACAAA TAAAATTTTT GTGTTTGTTA TATATGAGAG 132592 .......... .......... .......... .......... .......... .......... 440 TTGCTCAACT AAAGTAGTTG CTTCAATTTA CTTGTCCATC TTATGAAATT AAGATGATTC 132652 .......... .......... .......... .......... .......... .......... 440 TACTATATTT TTCTCTTTCT ATAGTATTCC ATATATATTA TTTTTATTTT TTAAAATAAA 132712 .......... .......... .......... .......... .......... .......... 440 AATCATAAAA GTTTGGTTTC TCAATATACG GATATTATAT TTTTCTCTTT CTATAGTATT 132772 .......... .......... .......... .......... .......... .......... 440 CCATATATAT TATTTTTATT TTTTAAAATA AAAATCATAA AAGTTTGGTT TCTCTCCCGT 132832 .......... .......... .......... .......... .......... .......... 440 TCTTATTGTT CTTCTTACTC CATCACGTCT TCAATTCTTC TTACTGCATC ATCGTCTTTC 132892 .......... .......... .......... .......... .......... .......... 440 TTCTTCTTAA CCCAGCATCT GTTATTGATT TCTTTTTTTT CTTATTATTC CATCATCAGT 132952 .......... .......... .......... .......... .......... .......... 440 TCTTCTTTTC TTCCTTTTTT TGTTTTGGTT AATTGTTCTA TTACATCATA GTAATGGATC 133012 .......... .......... .......... .......... .......... .......... 440 CGTTAATTAA TAGAAGGATA TATGATTCCG ACGATGAAAA TTGGAAAGAA AATAGAAAAA 133072 .......... .......... .......... .......... .......... .......... 440 AGTCTTTGCA TGATCATATG AATCTTCAGA AGGATTCAAA CAAAGACTCT GGCGAAACAT 133132 .......... .......... .......... .......... .......... .......... 440 CAAAATCAAA GGTTGTCAAA ATACAACAAA AAAAAAAAGA AAAAAGAAGC AGCAAACATT 133192 .......... .......... .......... .......... .......... .......... 440 GTTGTCAGGC TTACATTGTT TTGGGTTTGT ATTTTTATAC TTATTTTAAA ATTGTTGTTG 133252 .......... .......... .......... .......... .......... .......... 440 AAATAAGAAA AAAAAAATTA AGGAATCCAA TATGTATCAA AAAATTATGA AAATTATTAT 133312 .......... .......... .......... .......... .......... .......... 440 CATGTATCAG ATAATAGGTT TAATACATAA GTACTAAGTG GATTATAATG TTTAGTCTAT 133372 .......... .......... .......... .......... .......... .......... 440 GATTTGATAC ATGAATTAGA TGTGTATCAA GGGTTTTTGA ATTTTTTTTA TCATGTATCA 133432 .......... .......... .......... .......... .......... .......... 440 GTGATTAATT TCAATAATTG CGCCATCAAG TGTGCTTGTT GATACATTTT GAATCGTGTG 133492 .......... .......... .......... .......... .......... .......... 440 TATAGTGTTT TAGACGATGC ATTGATACAT GAAGTGTTTG CTGATACATT TTGAATCAGT 133552 .......... .......... .......... .......... .......... .......... 440 GTGCTTGCTG ATATATTTTG AATCCATCAA GTGTGTATAG TGTTTTAGAT GATGCATTGA 133612 .......... .......... .......... .......... .......... .......... 440 TACATTTTGA ATCCATCAAG TGTGCTTGCT GATACGTTTT GAATCAGTGT GTATAGTGTT 133672 .......... .......... .......... .......... .......... .......... 440 TTAGACGATG CATTGATACA TGAATTTGTT GTGTATCATA ATGTTTTCTA TGTATCATGC 133732 .......... .......... .......... .......... .......... .......... 440 GGTTTTGAAA ATTGTATTCA AAATAGATGA TATAATCTTT GATTTTCAAA ATTTGAAATT 133792 .......... .......... .......... .......... .......... .......... 440 AATATTCAAT TACGTGCTAA TTTAATGTTG ATTAATGATC CGTTACCGTA AATTAAGCTA 133852 | ||||||||| |||||||||| ||||||||| ||||||||| .......... .........A GTTAATGTTG ATTAATGATC TGTTACCGTA AATTAAGCTG 481 TTTTAGTTAA CAAGTTTAAA TG-TACTGTT TTCCCCCCAT TTTTTTCTTA ACAGTTTAAA 133911 |||||||||| |||||||||| || | | || |||||| | |||||||||| ||| || | TTTTAGTTAA CAAGTTTAAA TGTTCCATTT TTCCCCATTT TTTTTTCTTA ACAAGTTGAC 541 TTTACCAT 133919 | ||| CAGAACAT 549 hqPGS_C08HBa0197A05.1+_SGN-E392422- (133812 133919) ******************************************************************************** EST sequence 65 -strand 207 n (File: SGN-E392578-) 1 TAGTCACACC ACAACCAGAA GAAGATTTAG TTCACATAGT TAATGTTGAT TAATGATCTG 61 TTACCGTAAA TTAAGCTGTT TTAGTTAACA AGTTTAAATG TTCCATTTTT CCCCATTTTT 121 TTTTCTTAAC AAGTTGACCA GAACATTCAT TTGTTGCTTT ATAAAAAACA TTTAAAAAAT 181 CAATCAGTTC TTTTGTAAAA AAAAAAA Predicted gene structure (within gDNA segment 132814 to 135535): Exon 1 133814 133919 ( 106 n); cDNA 40 146 ( 107 n); score: 0.825 PPA cDNA 197 207 MATCH C08HBa0197A05.1+ SGN-E392578- 0.825 106 0.512 C PGS_C08HBa0197A05.1+_SGN-E392578- (133814 133919) Alignment (genomic DNA sequence = upper lines): TTAATGTTGA TTAATGATCC GTTACCGTAA ATTAAGCTAT TTTAGTTAAC AAGTTTAAAT 133873 |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTAATGTTGA TTAATGATCT GTTACCGTAA ATTAAGCTGT TTTAGTTAAC AAGTTTAAAT 99 GTACTGTTTT CCCCCCATTT TTT-TCTTAA CAGTTTAAAT TTACCAT 133919 || | |||| |||| ||| ||| |||||| || || | | ||| GTTCCATTTT TCCCCATTTT TTTTTCTTAA CAAGTTGACC AGAACAT 146 hqPGS_C08HBa0197A05.1+_SGN-E392578- (133814 133919) ******************************************************************************** EST sequence 67 -strand 230 n (File: SGN-E392587-) 1 GTATCCACCA AAATCTAGGG GCGTAGTCAC ACCACAACCA GAAGAAGATT TAGTTCACAT 61 AGTTAATGTT GATTAATGAT CTGTTACCGT AAATTAAGCT GTTTTAGTTA ACAAGTTTAA 121 ATGTTCCATT TTTCCCCATT TTTTTTTCTT AACAAGTTGA CCAGAACATT CATTTGTTGC 181 TTTATAAAAA ACATTTAAAA AATCAATCAG TTCTTTTGTA AAAAAAAAAA Predicted gene structure (within gDNA segment 132584 to 135535): Exon 1 133814 133919 ( 106 n); cDNA 63 169 ( 107 n); score: 0.825 PPA cDNA 220 230 MATCH C08HBa0197A05.1+ SGN-E392587- 0.825 106 0.461 C PGS_C08HBa0197A05.1+_SGN-E392587- (133814 133919) Alignment (genomic DNA sequence = upper lines): TTAATGTTGA TTAATGATCC GTTACCGTAA ATTAAGCTAT TTTAGTTAAC AAGTTTAAAT 133873 |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTAATGTTGA TTAATGATCT GTTACCGTAA ATTAAGCTGT TTTAGTTAAC AAGTTTAAAT 122 GTACTG-TTT TCCCCCCATT TTTTTCTTAA CAGTTTAAAT TTACCAT 133919 || | ||| ||||| || |||||||||| || || | | ||| GTTCCATTTT TCCCCATTTT TTTTTCTTAA CAAGTTGACC AGAACAT 169 hqPGS_C08HBa0197A05.1+_SGN-E392587- (133814 133919) Total number of EST alignments reported: 100 ________________________________________________________________________________ Predicted gene locations (17) in segment 1 to 136232: PGL 1 (- strand): 2860 2037 AGS-1 (2860 2037) SCR (e 0.935) Exon 1 2860 2037 ( 824 n); score: 0.935 PGS (2437 2037) SGN-E354195+ PGS (2678 2193) SGN-E203362- PGS (2860 2242) SGN-E546563- 3-phase translation of AGS-1 (-strand): . . . . . . 2860 TGAAAACTTATTTGAAACTGTTATTTGTAGTTTTGATGATTTGACAAACTTGGGAACCTT - K L I - N C Y L - F - - F D K L G N L E N L F E T V I C S F D D L T N L G T L K T Y L K L L F V V L M I - Q T W E P . . . . . . 2800 GTAAAGGTACCAGTTTCTTAATTGACTATTGTAGGGTTCTTGCTTGAGTATTGTAGATGA V K V P V S - L T I V G F L L E Y C R - - R Y Q F L N - L L - G S C L S I V D E C K G T S F L I D Y C R V L A - V L - M . . . . . . 2740 AACAAATTAAGGGACCTAGTAGAGGTACCAGGCTCTCATGATGAGGAGTCAGTTGATTGC N K L R D L V E V P G S H D E E S V D C T N - G T - - R Y Q A L M M R S Q L I A K Q I K G P S R G T R L S - - G V S - L . . . . . . 2680 CAGCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACT Q L E T V Q K V G A H F P M A S E S V T S W R R Y R K - V H T S R W R Q K V - L P A G D G T E S R C T L P D G V R K C D . . . . . . 2620 TTTCCAGCCAATGACAAAGAGGTTTAGGAAAGTGACTTGCCCATATAAAAGACACTTTCC F P A N D K E V - E S D L P I - K T L S F Q P M T K R F R K V T C P Y K R H F P F S S Q - Q R G L G K - L A H I K D T F . . . . . . 2560 TAAACATTTTGTGCAACTTTTGCAAATTGATAAAAACTTTTCAAGAACTCTTGCAAAGGC - T F C A T F A N - - K L F K N S C K G K H F V Q L L Q I D K N F S R T L A K A L N I L C N F C K L I K T F Q E L L Q R . . . . . . 2500 TACTACAAAGCAAAGACAGAATTATTCCAAGAACAACAGCAATATCTGGAGTTTTTCGTC Y Y K A K T E L F Q E Q Q Q Y L E F F V T T K Q R Q N Y S K N N S N I W S F S S L L Q S K D R I I P R T T A I S G V F R . . . . . . 2440 TAGTTGTTTAGGAATGCATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAA - L F R N A F S C S - T V N H S - I Y K S C L G M H S L V L K L - T I P E S I K L V V - E C I L L F L N C K P F L N L - . . . . . . 2380 GGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGA G I G V L C - K S R L S R W D S L V G R E L V C C V K S L G C P G G I A - W V D R N W C V V L K V - V V Q V G - L S G - . . . . . . 2320 TTGTTTTCTATTTAGGCTTGTTAAGCAATAGTGGACTATTTCTTAACTGTAAGATTGATA L F S I - A C - A I V D Y F L T V R L I C F L F R L V K Q - W T I S - L - D - - I V F Y L G L L S N S G L F L N C K I D . . . . . . 2260 ACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAATATTAGTGAAAAC T L S Y V W C N R V L L L L L N I S E N L F L T F G V I V F Y F C F - I L V K T N S F L R L V - S C F T F A F E Y - - K . . . . . . 2200 GATTGAAAATCCTGTAAGACAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACG D - K S C K T G R G F T P L S K E V S T I E N P V R Q V V V L L P - A R R F P R R L K I L - D R S W F Y S L K Q G G F H . . . . . . 2140 TAAAATCATCATGTTGATTTTACTGCATTTAACTTTCTTTTTATTCATTAGTGTAGTAAG - N H H V D F T A F N F L F I H - C S K K I I M L I L L H L T F F L F I S V V R V K S S C - F Y C I - L S F Y S L V - - . . . . . 2080 GGACCTGGTCTATTACTTGTTAAGTGAAGGCATATATTCTATCA G P G L L L V K - R H I F Y D L V Y Y L L S E G I Y S I G T W S I T C - V K A Y I L S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-1_AGS-1_PPS_1 (2622 2401) (frame '2'; 219 bp, 73 residues) 1 LFQPMTKRFR KVTCPYKRHF PKHFVQLLQI DKNFSRTLAK ATTKQRQNYS KNNSNIWSFS 61 SSCLGMHSLV LKL- 3-phase translation of AGS-1 (+strand): . . . . . . 2037 TGATAGAATATATGCCTTCACTTAACAAGTAATAGACCAGGTCCCTTACTACACTAATGA - - N I C L H L T S N R P G P L L H - - D R I Y A F T - Q V I D Q V P Y Y T N E I E Y M P S L N K - - T R S L T T L M . . . . . . 2097 ATAAAAAGAAAGTTAAATGCAGTAAAATCAACATGATGATTTTACGTGGAAACCTCCTTG I K R K L N A V K S T - - F Y V E T S L - K E S - M Q - N Q H D D F T W K P P C N K K K V K C S K I N M M I L R G N L L . . . . . . 2157 CTTAAGGGAGTAAAACCACGACCTGTCTTACAGGATTTTCAATCGTTTTCACTAATATTC L K G V K P R P V L Q D F Q S F S L I F L R E - N H D L S Y R I F N R F H - Y S A - G S K T T T C L T G F S I V F T N I . . . . . . 2217 AAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACAGTT K S K S K T R L H Q T - E R V I N L T V K A K V K H D Y T K R K K E L S I L Q L Q K Q K - N T I T P N V R K S Y Q S Y S . . . . . . 2277 AAGAAATAGTCCACTATTGCTTAACAAGCCTAAATAGAAAACAATCTACCCACTAAGCTA K K - S T I A - Q A - I E N N L P T K L R N S P L L L N K P K - K T I Y P L S Y - E I V H Y C L T S L N R K Q S T H - A . . . . . . 2337 TCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTATAGATTCAGGAA S H L D N L D F - H N T P I P L - I Q E P T W T T - T F N T T H Q F L Y R F R N I P P G Q P R L L T Q H T N S F I D S G . . . . . . 2397 TGGTTTACAGTTTAAGAACAAGAGAATGCATTCCTAAACAACTAGACGAAAAACTCCAGA W F T V - E Q E N A F L N N - T K N S R G L Q F K N K R M H S - T T R R K T P D M V Y S L R T R E C I P K Q L D E K L Q . . . . . . 2457 TATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTC Y C C C S W N N S V F A L - - P L Q E F I A V V L G I I L S L L C S S L C K S S I L L L F L E - F C L C F V V A F A R V . . . . . . 2517 TTGAAAAGTTTTTATCAATTTGCAAAAGTTGCACAAAATGTTTAGGAAAGTGTCTTTTAT L K S F Y Q F A K V A Q N V - E S V F Y - K V F I N L Q K L H K M F R K V S F I L E K F L S I C K S C T K C L G K C L L . . . . . . 2577 ATGGGCAAGTCACTTTCCTAAACCTCTTTGTCATTGGCTGGAAAAGTCACACTTTCTGAC M G K S L S - T S L S L A G K V T L S D W A S H F P K P L C H W L E K S H F L T Y G Q V T F L N L F V I G W K S H T F - . . . . . . 2637 GCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAATCAACTGACTCC A I G K C A P T F C T V S S W Q S T D S P S G S V H L L S V P S P A G N Q L T P R H R E V C T Y F L Y R L Q L A I N - L . . . . . . 2697 TCATCATGAGAGCCTGGTACCTCTACTAGGTCCCTTAATTTGTTTCATCTACAATACTCA S S - E P G T S T R S L N L F H L Q Y S H H E S L V P L L G P L I C F I Y N T Q L I M R A W Y L Y - V P - F V S S T I L . . . . . . 2757 AGCAAGAACCCTACAATAGTCAATTAAGAAACTGGTACCTTTACAAGGTTCCCAAGTTTG S K N P T I V N - E T G T F T R F P S L A R T L Q - S I K K L V P L Q G S Q V C K Q E P Y N S Q L R N W Y L Y K V P K F . . . . . 2817 TCAAATCATCAAAACTACAAATAACAGTTTCAAATAAGTTTTCA S N H Q N Y K - Q F Q I S F Q I I K T T N N S F K - V F V K S S K L Q I T V S N K F S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1+_PGL-1_AGS-1_PPS_1 (2521 2775) (frame '2'; 252 bp, 84 residues) 1 KVFINLQKLH KMFRKVSFIW ASHFPKPLCH WLEKSHFLTP SGSVHLLSVP SPAGNQLTPH 61 HESLVPLLGP LICFIYNTQA RTLQ- PGL 2 (+ strand): 17826 18355 AGS-1 (17826 18193) SCR (e 0.773) Exon 1 17826 18193 ( 368 n); score: 0.773 PGS (17826 18193) SGN-E540411+ PGS (17859 18164) SGN-E540411- PGS (17859 18064) SGN-E540414+ 3-phase translation of AGS-1 (+strand): . . . . . . 17826 TTTAACTATTCAACTTTTATATAAATAAACGAGATAATGCCCAAGTACCCCCTCAACCTA F N Y S T F I - I N E I M P K Y P L N L L T I Q L L Y K - T R - C P S T P S T Y - L F N F Y I N K R D N A Q V P P Q P . . . . . . 17886 TGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTT C P K S Q R H T Y T I L R S Y Y P P E L A R N L R D T L I L Y - G P I T P L N L M P E I S E T H L Y Y T K V L L P P - T . . . . . . 17946 ATTTTATTAATAATTTTTTACCCCTTTTTAGCTTACGTGACACTATCTTGTGGGCCCAAC I L L I I F Y P F L A Y V T L S C G P N F Y - - F F T P F - L T - H Y L V G P T Y F I N N F L P L F S L R D T I L W A Q . . . . . . 18006 GATGGTTGACTTTTTTTTTGAACTAGTGCCACGTAGGCTAAAAAGAGGTAGAAAATTACA D G - L F F - T S A T - A K K R - K I T M V D F F F E L V P R R L K R G R K L H R W L T F F L N - C H V G - K E V E N Y . . . . . . 18066 TATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGAT Y K I S S G G - - D L S I V - V C L W D I K - V Q G G N R T L V - Y K C V S G I I - N K F R G V I G P - Y S I S V S L G . . . . . . 18126 TTCGGGCATAGGTTGAGGGCGTACTTGGATATTTTCCCTAAATAAACACATGAGTCTTAC F G H R L R A Y L D I F P K - T H E S Y S G I G - G R T W I F S L N K H M S L T F R A - V E G V L G Y F P - I N T - V L . 18186 ATGACACA M T - H H D T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 18193 TGTGTCATGTAAGACTCATGTGTTTATTTAGGGAAAATATCCAAGTACGCCCTCAACCTA C V M - D S C V Y L G K I S K Y A L N L V S C K T H V F I - G K Y P S T P S T Y C H V R L M C L F R E N I Q V R P Q P . . . . . . 18133 TGCCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTT C P K S Q R H T Y T I L R S Y Y P P E L A R N P R D T L I L Y - G P I T P L N L M P E I P E T H L Y Y T K V L L P P - T . . . . . . 18073 ATTTTATATGTAATTTTCTACCTCTTTTTAGCCTACGTGGCACTAGTTCAAAAAAAAAGT I L Y V I F Y L F L A Y V A L V Q K K S F Y M - F S T S F - P T W H - F K K K V Y F I C N F L P L F S L R G T S S K K K . . . . . . 18013 CAACCATCGTTGGGCCCACAAGATAGTGTCACGTAAGCTAAAAAGGGGTAAAAAATTATT Q P S L G P Q D S V T - A K K G - K I I N H R W A H K I V S R K L K R G K K L L S T I V G P T R - C H V S - K G V K N Y . . . . . . 17953 AATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGAT N K I S S G G - - D L S I V - V C L - D I K - V Q G G N R T L V - Y K C V S E I - - N K F R G V I G P - Y S I S V S L R . . . . . . 17893 TTCGGGCATAGGTTGAGGGGGTACTTGGGCATTATCTCGTTTATTTATATAAAAGTTGAA F G H R L R G Y L G I I S F I Y I K V E S G I G - G G T W A L S R L F I - K L N F R A - V E G V L G H Y L V Y L Y K S - . 17833 TAGTTAAA - L S - I V K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-2_AGS-1_PPS_1 (18181 17978) (frame '1'; 201 bp, 67 residues) 1 DSCVYLGKIS KYALNLCPKS QRHTYTILRS YYPPELILYV IFYLFLAYVA LVQKKSQPSL 61 GPQDSVT- AGS-2 (18219 18355) SCR (e 0.920) Exon 1 18219 18355 ( 137 n); score: 0.920 PGS (18219 18355) SGN-E356529- 3-phase translation of AGS-2 (+strand): . . . . . . 18219 AAAAATGACATGTAGGACATGTGTGTCTATTTGTTCGACTTTATACAAGTTTAAGTGTCT K N D M - D M C V Y L F D F I Q V - V S K M T C R T C V S I C S T L Y K F K C L K - H V G H V C L F V R L Y T S L S V . . . . . . 18279 ACTTGTGCACACCCAAAGTTGAAGGGCATAAATGTAATTCGAATTCCAGTTAAAAAGCAT T C A H P K L K G I N V I R I P V K K H L V H T Q S - R A - M - F E F Q L K S I Y L C T P K V E G H K C N S N S S - K A . . 18339 ATTTATGTATTATGCCT I Y V L C F M Y Y A Y L C I M P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 18355 AGGCATAATACATAAATATGCTTTTTAACTGGAATTCGAATTACATTTATGCCCTTCAAC R H N T - I C F L T G I R I T F M P F N G I I H K Y A F - L E F E L H L C P S T A - Y I N M L F N W N S N Y I Y A L Q . . . . . . 18295 TTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTCGAACAAATAGACACACATG F G C A Q V D T - T C I K S N K - T H M L G V H K - T L K L V - S R T N R H T C L W V C T S R H L N L Y K V E Q I D T H . . 18235 TCCTACATGTCATTTTT S Y M S F P T C H F V L H V I F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 30690 32156 AGS-1 (30690 31338) SCR (e 0.991) Exon 1 30690 31338 ( 649 n); score: 0.991 PGS (30690 31338) SGN-E539761+ PGS (30691 31075) SGN-E284788+ 3-phase translation of AGS-1 (+strand): . . . . . . 30690 TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAG Y V R N W E S - Q T G G V S S H S E R E T S E T G S L D K Q V E F Q V I Q N E S R Q K L G V L T N R W S F K S F R T R . . . . . . 30750 CGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGA R F K G T - R G G S R A T D - N - Y S R D L K E P E E E D Q E P Q T E T D I P E A I - R N L K R R I K S H R L K L I F Q . . . . . . 30810 ATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGT I Y A I R Y P S E Y S S R S A K E G W S S M P S D I H Q S I A Q D R P R R V G V N L C H Q I S I R V - L K I G Q G G L E . . . . . . 30870 TCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGA S A T Y E V W F - G H G G L C T A G C - R P P T R Y G F E D M V G Y A L Q V A E F G H L R G M V L R T W W V M H C R L L . . . . . . 30930 AGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGA R G R Y I - A V Y L Q R S H F K F - F - E V D T S E P S T Y K E A I L S S D S E K R - I H L S R L L T K K P F - V L I L . . . . . . 30990 AAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGA K M V C R Y G R - D G V P T Q E S D M G K W F A A M G D E M E S L H K N Q T W D K N G L P L W E M R W S P Y T R I R H G . . . . . . 31050 TCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAA S G H T A F G E K D Y Y L Q M G F Q E E L V I Q P S G R K I I T C K W V F K K K I W S Y S L R G E R L L L A N G F S R R . . . . . . 31110 GGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTT G R D I T S R R S Q V - S Q G C C Q R F E G I S P A E G V K Y K A R V V A R G F R K G Y H Q Q K E S S I K P G L L P E V . . . . . . 31170 CAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTC Q P K R G S G L - - D L L T S G Q T Y F N Q R E G V D Y N E I F S P V V R H T S S T K E R E W T I M R S S H Q W S D I L . . . . . . 31230 CATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGT H P S V T S D S C T S E S G A - T T - C I R V L L A I V A H Q N L E L E Q L D V P S E C Y - R - L H I R I W S L N N L M . . . . . 31290 GAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT E D S V S T W R V G G R D I H D K T A F L H G E L E E E I Y M T - R Q R F Y M E S W R K R Y T - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1+_PGL-3_AGS-1_PPS_1 (30691 31338) (frame '2'; 648 bp, 216 residues) 1 TSETGSLDKQ VEFQVIQNES DLKEPEEEDQ EPQTETDIPE SMPSDIHQSI AQDRPRRVGV 61 RPPTRYGFED MVGYALQVAE EVDTSEPSTY KEAILSSDSE KWFAAMGDEM ESLHKNQTWD 121 LVIQPSGRKI ITCKWVFKKK EGISPAEGVK YKARVVARGF NQREGVDYNE IFSPVVRHTS 181 IRVLLAIVAH QNLELEQLDV KTAFLHGELE EEIYMT 3-phase translation of AGS-1 (-strand): . . . . . . 31338 AGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTG S H V Y L F L Q L S M - K R C L H I K L V M Y I S S S N S P C R N A V F T S S C S C I S L P P T L H V E T L S S H Q V . . . . . . 31278 TTCAAGCTCCAGATTCTGATGTGCAACTATCGCTAGTAACACTCGGATGGAAGTATGTCT F K L Q I L M C N Y R - - H S D G S M S S S S R F - C A T I A S N T R M E V C L V Q A P D S D V Q L S L V T L G W K Y V . . . . . . 31218 GACCACTGGTGAGAAGATCTCATTATAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGC D H W - E D L I I V H S L S L V E T S G T T G E K I S L - S T P S L W L K P L A - P L V R R S H Y S P L P L F G - N L W . . . . . . 31158 AACAACCCTGGCTTTATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAA N N P G F I L D S F C W - Y P F L L L E T T L A L Y L T P S A G D I P S F F L K Q Q P W L Y T - L L L L V I S L P S S - . . . . . . 31098 AACCCATTTGCAAGTAATAATCTTTCTCCCCGAAGGCTGTATGACCAGATCCCATGTCTG N P F A S N N L S P R R L Y D Q I P C L T H L Q V I I F L P E G C M T R S H V - K P I C K - - S F S P K A V - P D P M S . . . . . . 31038 ATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCGGCAAACCATTTTTCAGAATCAGA I L V - G L H L I S H S G K P F F R I R F L C R D S I S S P I A A N H F S E S E D S C V G T P S H L P - R Q T I F Q N Q . . . . . . 30978 ACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGTATCTACCTCTTCAGCAACCTG T - N G F F V S R R L R C I Y L F S N L L K M A S L - V D G S D V S T S S A T C N L K W L L C K - T A Q M Y L P L Q Q P . . . . . . 30918 CAGTGCATAACCCACCATGTCCTCAAAACCATACCTCGTAGGTGGCCGAACTCCAACCCT Q C I T H H V L K T I P R R W P N S N P S A - P T M S S K P Y L V G G R T P T L A V H N P P C P Q N H T S - V A E L Q P . . . . . . 30858 CCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATC P W P I L S Y T L M D I - W H R F W N I L G R S - A I L - W I S D G I D S G I S S L A D L E L Y S D G Y L M A - I L E Y . . . . . . 30798 AGTTTCAGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCGCTCTCGTTCTG S F S L W L L I L L F R F L - I A L V L V S V C G S - S S S S G S F K S L S F - Q F Q S V A L D P P L Q V P L N R S R S . . . . . 30738 AATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTA N D L K L H L F V K T P S F - R M T - N S T C L S R L P V S D V E - L E T P P V C Q D S Q F L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (31349 32156) SCR (e 0.998) Exon 1 31349 32156 ( 808 n); score: 0.998 PGS (31349 32156) SGN-E343338+ 3-phase translation of AGS-2 (+strand): . . . . . . 31349 GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGAC V S K F Q G R K I T S A S - R S P Y M D F P S S R E G K S R L Q V E E V L I W T F Q V P G K E N H V C K L K K S L Y G . . . . . . 31409 TTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCT L S S L Q G S G I K G L T A I W - S W A - A V S K A V V - K V - Q L Y G E V G L L K Q S P R Q W Y K R F D S Y M V K L G . . . . . . 31469 ATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCA I L G A H M I V V S T T I G S M M I H S Y S E L I - L L C L L Q - A Q - - F I H Y T R S S Y D C C V Y Y N R L N D D S F . . . . . . 31529 TCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTC S I W C F M - M I C - - L Q R R S M T F L S G A L C R - Y V D S C K E E V - H S I Y L V L Y V D D M L I A A K K K Y D I . . . . . . 31589 AGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGA R S - R V Y L V L S L R - R I W E P L G E A E G F T - C - V - D E G S G S R S E Q K L K G L L S A E F E M K D L G A A R . . . . . . 31649 AGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGA R F - G W R S L E T E R E G N F S C H R D F R D G D H - R Q R E K E T F L V T E K I L G M E I I R D R E R R K L F L S Q . . . . . . 31709 GAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATA E A T F R R S W R G L A C L H L S P L I K L H S E G L G E V W H V F I - A H - Y R S Y I Q K V L A R F G M S S S K P I D . . . . . . 31769 CCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGA P P V L P I S I S L P C S L H S Q K K R P Q C C Q Y P S H C H V R S T V R R R E T P S A A N I H L T A M F A P Q S E E E . . . . . . 31829 AGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGG R S I C H E S L M P V P - E V - C M L W G V Y V T S P L C Q C R R K F D V C Y G K E Y M S R V P Y A S A V G S L M Y A M . . . . . . 31889 TCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAAC S V Q G Q I - H M Q S V - - A D S W D N L Y K A R F S T C S Q C S E Q I H G T T V C T R P D L A H A V S V V S R F M G Q . . . . . . 31949 CAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTG Q G E N I G R L - R E F S G T L E V H L R E R T L A G C E E N F P V P - R Y I - P G R E H W Q A V K R I F R Y L R G T S . . . . . . 32009 ACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAG T L V S F M E V I L S A W L L A I L I Q R W S H L W R - Y S V L G Y W L F - F R D V G L I Y G G D T Q C L V T G Y S D S . . . . . . 32069 ACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAG T M L E M L T Q E D R - L A M C L P L E L C W R C - H K K I D D W L C V Y P W R D Y A G D V D T R R S M T G Y V F T L G . . . 32129 GATCTGTCGTCAGTTGGAAGGCAACTTT D L S S V G R Q L I C R Q L E G N F G S V V S W K A T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1+_PGL-3_AGS-2_PPS_1 (31351 32154) (frame '0'; 804 bp, 268 residues) 1 FQVPGKENHV CKLKKSLYGL KQSPRQWYKR FDSYMVKLGY TRSSYDCCVY YNRLNDDSFI 61 YLVLYVDDML IAAKKKYDIQ KLKGLLSAEF EMKDLGAARK ILGMEIIRDR ERRKLFLSQR 121 SYIQKVLARF GMSSSKPIDT PSAANIHLTA MFAPQSEEEK EYMSRVPYAS AVGSLMYAMV 181 CTRPDLAHAV SVVSRFMGQP GREHWQAVKR IFRYLRGTSD VGLIYGGDTQ CLVTGYSDSD 241 YAGDVDTRRS MTGYVFTLGG SVVSWKAT 3-phase translation of AGS-2 (-strand): . . . . . . 32156 AAAGTTGCCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGAT K V A F Q L T T D P P R V N T - P V I D K L P S N - R Q I L Q G - T H S Q S S I S C L P T D D R S S K G K H I A S H R . . . . . . 32096 CTTCTTGTGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGA L L V S T S P A - S E S E - P V T K H - F L C Q H L Q H S L N Q N S Q - P S T E S S C V N I S S I V - I R I A S N Q A L . . . . . . 32036 GTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTC V S P P - M R P T S D V P L R Y R K I L Y H L H K - D Q R Q M Y L - G T G K F S S I T S I N E T N V R C T S K V P E N S . . . . . . 31976 TTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACT F T A C Q C S L P G C P M N L L T T L T S Q P A N V L S L V V P - I C S L H - L L H S L P M F S P W L S H E S A H Y T D . . . . . . 31916 GCATGTGCTAAATCTGGCCTTGTACAGACCATAGCATACATCAAACTTCCTACGGCACTG A C A K S G L V Q T I A Y I K L P T A L H V L N L A L Y R P - H T S N F L R H W C M C - I W P C T D H S I H Q T S Y G T . . . . . . 31856 GCATAAGGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCGAACATGGCA A - G T R D I Y S F S S S D C G A N M A H K G L V T Y T P S L L L T V E R T W Q G I R D S - H I L L L F F - L W S E H G . . . . . . 31796 GTGAGATGGATATTGGCAGCACTGGGGGTATCAATGGGCTTAGATGAAGACATGCCAAAC V R W I L A A L G V S M G L D E D M P N - D G Y W Q H W G Y Q W A - M K T C Q T S E M D I G S T G G I N G L R - R H A K . . . . . . 31736 CTCGCCAAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTG L A K T F - M - L L C D K K S F L L S L S P R P S E C S F S V T R K V S F S L C P R Q D L L N V A S L - Q E K F P S L S . . . . . . 31676 TCTCTAATGATCTCCATCCCTAAAATCTTCCGAGCGGCTCCCAGATCCTTCATCTCAAAC S L M I S I P K I F R A A P R S F I S N L - - S P S L K S S E R L P D P S S Q T V S N D L H P - N L P S G S Q I L H L K . . . . . . 31616 TCAGCACTAAGTAAACCCTTCAGCTTCTGAATGTCATACTTCTTCTTTGCAGCTATCAAC S A L S K P F S F - M S Y F F F A A I N Q H - V N P S A S E C H T S S L Q L S T L S T K - T L Q L L N V I L L L C S Y Q . . . . . . 31556 ATATCATCTACATAAAGCACCAGATAGATGAATGAATCATCATTGAGCCTATTGTAGTAG I S S T - S T R - M N E S S L S L L - - Y H L H K A P D R - M N H H - A Y C S R H I I Y I K H Q I D E - I I I E P I V V . . . . . . 31496 ACACAACAATCATATGAGCTCCGAGTATAGCCCAACTTCACCATATAGCTGTCAAACCTT T Q Q S Y E L R V - P N F T I - L S N L H N N H M S S E Y S P T S P Y S C Q T F D T T I I - A P S I A Q L H H I A V K P . . . . . . 31436 TTATACCACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACG L Y H C L G D C L S P Y K D F F N L Q T Y T T A L E T A - V H I R T S S T C R R F I P L P W R L L K S I - G L L Q L A D . . . 31376 TGATTTTCCTTCCCTGGAACTTGGAAAC - F S F P G T W K D F P S L E L G N V I F L P W N L E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 32803 34965 AGS-1 (32803 33017,33848 33872,34932 34965) SCR (e 0.898 d 0.271 a 0.000,e 0.760 d 0.901 a 0.000,e 0.706) Exon 1 32803 33017 ( 215 n); score: 0.898 Intron 1 33018 33847 ( 830 n); Pd: 0.271 Pa: 0.000 Exon 2 33848 33872 ( 25 n); score: 0.760 Intron 2 33873 34931 (1059 n); Pd: 0.901 Pa: 0.000 Exon 3 34932 34965 ( 34 n); score: 0.706 PGS (32803 33017,33848 33872,34932 34965) SGN-E301194+ PGS (32803 33017,33848 33872) SGN-E301078+ 3-phase translation of AGS-1 (+strand): . . . . . . 32803 CCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATT P V R A - L S T I Y R R Y G K P Y S V I L L G R S L A L Y I D A M G N P I L - F C - G V A - H Y I - T L W E T L F C N . . . . . . 32863 CTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTG L F L P L H N K T A P S L P V D V A N L C F C L S I I K L L P L F P W T - P I C S V F A S P - - N C S L S S R G R S Q F . . . . . . 32923 TTGGTGAACCACGTAAATCTGTTGTCTTATTTTTCGCGTTTATATTTTCTCGTATTATCT L V N H V N L L S Y F S R L Y F L V L S W - T T - I C C L I F R V Y I F S Y Y L V G E P R K S V V L F F A F I F S R I I . . . . : . . : 32983 CAAATTCCGCACAACACTAGACATTGATAAATATT : ATGTTTTCATGTCATTATAACATCC : Q I P H N T R H - - I L : C F H V I I T S : K F R T T L D I D K Y : Y V F M S L - H P : S N S A Q H - T L I N I : M F S C H Y N I : . . . . 34932 AAAAATGTAATTTGAAATTGGAGGAAAGTTTTGG K N V I - N W R K V L K M - F E I G G K F W Q K C N L K L E E S F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 43329 42162 AGS-1 (43329 42730,42699 42351,42310 42162) SCR (e 0.888 d 0.000 a 0.000,e 0.907 d 0.000 a 0.000,e 0.899) Exon 1 43329 42730 ( 600 n); score: 0.888 Intron 1 42729 42700 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 42699 42351 ( 349 n); score: 0.907 Intron 2 42350 42311 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 3 42310 42162 ( 149 n); score: 0.899 PGS (42891 42730,42699 42351,42310 42162) SGN-E549201- PGS (42695 42351,42310 42162) SGN-E309163- PGS (43329 42882) SGN-E545402+ 3-phase translation of AGS-1 (-strand): . . . . . . 43329 CTGCTGAACCAATCTCTACGGAATGTCATATGCAGAGTACAACCAGAGTCTAAGATCCAT L L N Q S L R N V I C R V Q P E S K I H C - T N L Y G M S Y A E Y N Q S L R S I A E P I S T E C H M Q S T T R V - D P . . . . . . 43269 TTGTTGTCATAGAATCCATTATTGCATGATGTTGTTAGTACATAATCATCATCATTATCA L L S - N P L L H D V V S T - S S S L S C C H R I H Y C M M L L V H N H H H Y H F V V I E S I I A - C C - Y I I I I I I . . . . . . 43209 TGTACTTTCTCAACAATGGATGCACTCACCTTTTCTTTGGACTTCGACATAGGGCAATCT C T F S T M D A L T F S L D F D I G Q S V L S Q Q W M H S P F L W T S T - G N L M Y F L N N G C T H L F F G L R H R A I . . . . . . 43149 CGGTTAAAGTGCCCCTTCTTGTGACAGCCCCAACACTCCGCATTCTTTTTGTTCACACGA R L K C P F L - Q P Q H S A F F L F T R G - S A P S C D S P N T P H S F C S H E S V K V P L L V T A P T L R I L F V H T . . . . . . 43089 GACTTTGATCTGTACTTCGATTTTCTCCTTCCCTTTTGGCTAGTACGACCTCTTACAAAG D F D L Y F D F L L P F W L V R P L T K T L I C T S I F S F P F G - Y D L L Q R R L - S V L R F S P S L L A S T T S Y K . . . . . . 43029 AGTCCACTAGCTTCGTCACTTTTGTCTCCTTCAAAATGCATCCGCACATCACAAGAGTTT S P L A S S L L S P S K C I R T S Q E F V H - L R H F C L L Q N A S A H H K S L E S T S F V T F V S F K M H P H I T R V . . . . . . 42969 AGTGCTTGCCGCACTTGCTCAAGTTTAATAGGTTGTTTGCTATACATCATTGAATTCTCA S A C R T C S S L I G C L L Y I I E F S V L A A L A Q V - - V V C Y T S L N S Q - C L P H L L K F N R L F A I H H - I L . . . . . . 42909 ATATCACGATATTTTGAAGTCAATGAAAATAGTAAAGAACATGCAAGTGTCTCCTCGTCC I S R Y F E V N E N S K E H A S V S S S Y H D I L K S M K I V K N M Q V S P R P N I T I F - S Q - K - - R T C K C L L V . . . . . . 42849 TTTTTAATTCCAGCAGTTTGTAAGTCCATAACAAGTTTATTGAACGCATCTAGATGGTCT F L I P A V C K S I T S L L N A S R W S F - F Q Q F V S P - Q V Y - T H L D G L L F N S S S L - V H N K F I E R I - M V . . . . . . : 42789 TGCAACAAAGTACCTGAATCCATCTTAAATGTATGAAGACGCCGTTGTAACAACATCCTT : C N K V P E S I L N V - R R R C N N I L : A T K Y L N P S - M Y E D A V V T T S F : L Q Q S T - I H L K C M K T P L - Q H P : . . . . . . 42699 TCCAGCTTTTCCCATAACTCTTTGGCCGTCTCTTCGGTACTTGTACTCACTTTACAAAGT S S F S H N S L A V S S V L V L T L Q S P A F P I T L W P S L R Y L Y S L Y K V F Q L F P - L F G R L F G T C T H F T K . . . . . . 42639 ACGTTAGGTGCAAGGGACAGTTGGATTGCACTCAATGCATCTCCTTCAATCTTTTCCTTG T L G A R D S W I A L N A S P S I F S L R - V Q G T V G L H S M H L L Q S F P C Y V R C K G Q L D C T Q C I S F N L F L . . . . . . 42579 TCGGAATCCGATATCTTATCGGGGTACTTTCCGTCAATAGCATGGATTGAACCTTCCCTC S E S D I L S G Y F P S I A W I E P S L R N P I S Y R G T F R Q - H G L N L P S V G I R Y L I G V L S V N S M D - T F P . . . . . . 42519 CGCAGTAACGCTATCATCTGGATTTTCCAGATATTGAAGTTGTTGCGCCCACTAAATCTA R S N A I I W I F Q I L K L L R P L N L A V T L S S G F S R Y - S C C A H - I Y P Q - R Y H L D F P D I E V V A P T K S . . . . . . 42459 TCAATTTCAAACTTCATGGAACTCATTTTTTTTATTTGTTCTTCCTTTTCTACTACAATG S I S N F M E L I F F I C S S F S T T M Q F Q T S W N S F F L F V L P F L L Q C I N F K L H G T H F F Y L F F L F Y Y N . . . . . : . 42399 TATTTGGAACTACAGAAAACCAAAGTAATCCTTTTCTGATGTAGAAGTT : TTGCTCTGATA Y L E L Q K T K V I L F - C R S : F A L I I W N Y R K P K - S F S D V E V : L L - Y V F G T T E N Q S N P F L M - K F : C S D . . . . . . 42299 CCAATTGTTAGCGGAAACGTGAAACTAAAGAACAAGGAAGAACAACAATATTTAACGTGG P I V S G N V K L K N K E E Q Q Y L T W Q L L A E T - N - R T R K N N N I - R G T N C - R K R E T K E Q G R T T I F N V . . . . . . 42239 TTCGGATCAAAATGATCCTACGTCCACCAAAGAACAACTGCACCAATATTTATTTCACTA F G S K - S Y V H Q R T T A P I F I S L S D Q N D P T S T K E Q L H Q Y L F H Y V R I K M I L R P P K N N C T N I Y F T . . 42179 TACAAAGAATATAAGTGA Y K E Y K - T K N I S I Q R I - V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-5_AGS-1_PPS_1 (43125 42754) (frame '1'; 369 bp, 123 residues) 1 QPQHSAFFLF TRDFDLYFDF LLPFWLVRPL TKSPLASSLL SPSKCIRTSQ EFSACRTCSS 61 LIGCLLYIIE FSISRYFEVN ENSKEHASVS SSFLIPAVCK SITSLLNASR WSCNKVPESI 121 LNV- >C08HBa0197A05.1-_PGL-5_AGS-1_PPS_2 (42753 42730,42699 42361) (frame '1'; 360 bp, 120 residues) 1 RRRCNNILSS FSHNSLAVSS VLVLTLQSTL GARDSWIALN ASPSIFSLSE SDILSGYFPS 61 IAWIEPSLRS NAIIWIFQIL KLLRPLNLSI SNFMELIFFI CSSFSTTMYL ELQKTKVILF 121 - PGL 6 (- strand): 52367 46681 AGS-1 (52367 52341,50568 50538,50132 50112,49821 49813,49509 49406,48583 48569,46849 46681) SCR (e 0.778 d 0.223 a 0.910,e 0.548 d 0.990 a 0.999,e 0.667 d 0.000 a 0.997,e 0.667 d 0.000 a 0.000,e 0.577 d 0.900 a 0.208,e 0.600 d 0.689 a 0.000,e 0.775) Exon 1 52367 52341 ( 27 n); score: 0.778 Intron 1 52340 50569 (1772 n); Pd: 0.223 Pa: 0.910 Exon 2 50568 50538 ( 31 n); score: 0.548 Intron 2 50537 50133 ( 405 n); Pd: 0.990 Pa: 0.999 Exon 3 50132 50112 ( 21 n); score: 0.667 Intron 3 50111 49822 ( 290 n); Pd: 0.000 Pa: 0.997 Exon 4 49821 49813 ( 9 n); score: 0.667 Intron 4 49812 49510 ( 303 n); Pd: 0.000 Pa: 0.000 Exon 5 49509 49406 ( 104 n); score: 0.577 Intron 5 49405 48584 ( 822 n); Pd: 0.900 Pa: 0.208 Exon 6 48583 48569 ( 15 n); score: 0.600 Intron 6 48568 46850 (1719 n); Pd: 0.689 Pa: 0.000 Exon 7 46849 46681 ( 169 n); score: 0.775 PGS (52367 52341,50568 50538,50132 50112,49821 49813,49509 49406,48583 48569,46849 46681) SGN-E542170+ 3-phase translation of AGS-1 (-strand): . . . : . . . : 52367 CAACACTAAAATTAAAATTAAGCAACG : TGGAACAACTGCTGTGGTTGCTATAAGACAG : CT Q H - N - N - A T : W N N C C G C Y K T : A N T K I K I K Q R : G T T A V V A I R Q : L T L K L K L S N : V E Q L L W L L - D S : . . : . : . . . 50130 GAAGTAGAAAGAATAAGGA : GTGTGGGAT : TCATGAGATGAATTTCTAAGTGTTTTTTTCTA E V E R I R : S V G : F M R - I S K C F F L K - K E - G : V W D : S - D E F L S V F F Y - S R K N K E : C G I : H E M N F - V F F S . . . . . . 49477 TATAAATAAAGCATACTACTACACAAACATTTTGTGTAAATATAATGCATTTTGTACACT Y K - S I L L H K H F V - I - C I L Y T I N K A Y Y Y T N I L C K Y N A F C T L I - I K H T T T Q T F C V N I M H F V H . . : . : . . . 49417 CATTTGTTCACC : GATGTGTAGTCCACT : GAACAACTGCACCAATATTTATTTCACTATACA H L F T : D V - S T : E Q L H Q Y L F H Y T I C S P : M C S P L : N N C T N I Y F T I Q S F V H : R C V V H : - T T A P I F I S L Y . . . . . . 46816 AAGAATATAAGTGAATACTACAAGAGAGAGAACACAATGCCTTAGAAGATGAGAAGGCAA K N I S E Y Y K R E N T M P - K M R R Q R I - V N T T R E R T Q C L R R - E G K K E Y K - I L Q E R E H N A L E D E K A . . . . . . 46756 GTGAAAGGATGATTTGAAAATGAATTAAGAGCTACCTATTTATAGGAATAAATTCATCCT V K G - F E N E L R A T Y L - E - I H P - K D D L K M N - E L P I Y R N K F I L S E R M I - K - I K S Y L F I G I N S S . . 46696 ATTGATGTCATCCATG I D V I H L M S S M Y - C H P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 57067 57165 AGS-1 (57067 57165) SCR (e 0.940) Exon 1 57067 57165 ( 99 n); score: 0.940 PGS (57067 57165) SGN-E392579+ PGS (57067 57165) SGN-E397911+ PGS (57067 57165) SGN-E392202- PGS (57083 57165) SGN-E392578- PGS (57083 57165) SGN-E392587- PGS (57085 57165) SGN-E392422- 3-phase translation of AGS-1 (+strand): . . . . . . 57067 ATTAATATTCAATAATTTAATGCTGATTAATGATCTGTTACCGTAAATTAAGCTATTTTA I N I Q - F N A D - - S V T V N - A I L L I F N N L M L I N D L L P - I K L F - - Y S I I - C - L M I C Y R K L S Y F . . . . 57127 GTTAACAAGTTTAAATGTACCGTTTTCCCCCATTTTTTT V N K F K C T V F P H F F L T S L N V P F S P I F S - Q V - M Y R F P P F F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 57165 AAAAAAATGGGGGAAAACGGTACATTTAAACTTGTTAACTAAAATAGCTTAATTTACGGT K K M G E N G T F K L V N - N S L I Y G K K W G K T V H L N L L T K I A - F T V K N G G K R Y I - T C - L K - L N L R . . . . 57105 AACAGATCATTAATCAGCATTAAATTATTGAATATTAAT N R S L I S I K L L N I N T D H - S A L N Y - I L - Q I I N Q H - I I E Y - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 58141 58036 AGS-1 (58141 58036) SCR (e 0.981) Exon 1 58141 58036 ( 106 n); score: 0.981 PGS (58141 58036) SGN-E355020- PGS (58138 58036) SGN-E262727- 3-phase translation of AGS-1 (-strand): . . . . . . 58141 TGTCTATTGACCGCTTCGCCTATCTATTCTATTATGGCCGGCTTGGAGACATCAGAGGAA C L L T A S P I Y S I M A G L E T S E E V Y - P L R L S I L L W P A W R H Q R K S I D R F A Y L F Y Y G R L G D I R G . . . . . 58081 GACCACCATCTCTATCCGGATCATAGCTTCATTCGTTCGTTGAACC D H H L Y P D H S F I R S L N T T I S I R I I A S F V R - T R P P S L S G S - L H S F V E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 58036 GGTTCAACGAACGAATGAAGCTATGATCCGGATAGAGATGGTGGTCTTCCTCTGATGTCT G S T N E - S Y D P D R D G G L P L M S V Q R T N E A M I R I E M V V F L - C L F N E R M K L - S G - R W W S S S D V . . . . . 58096 CCAAGCCGGCCATAATAGAATAGATAGGCGAAGCGGTCAATAGACA P S R P - - N R - A K R S I D Q A G H N R I D R R S G Q - T S K P A I I E - I G E A V N R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 86941 88423 AGS-1 (86941 88423) SCR (e 0.911) Exon 1 86941 88423 (1483 n); score: 0.911 PGS (86941 87515) SGN-E346859+ PGS (86949 87345) SGN-E577891- PGS (86957 87486) SGN-E286708- PGS (86961 87353) SGN-E578039- PGS (86965 87486) SGN-E540293- PGS (86986 87461) SGN-E243969- PGS (87072 87632) SGN-E546025- PGS (87072 87259) SGN-E546067+ PGS (87339 87895) SGN-E550629- PGS (87339 87895) SGN-E550645- PGS (87421 87630) SGN-E357596+ PGS (87704 87939) SGN-E205253+ PGS (87739 88423) SGN-E241731- 3-phase translation of AGS-1 (+strand): . . . . . . 86941 AATTTACACTTGGAAATGACGTATTGATATACCATGGTTTCACGATATAATTAATACTTT N L H L E M T Y - Y T M V S R Y N - Y F I Y T W K - R I D I P W F H D I I N T F F T L G N D V L I Y H G F T I - L I L . . . . . . 87001 TTTCTTAAGTTTAGTATGTCCGAAAGCCTTTTTTGTGCTAATTTTGATATAAGTTTCTCT F L K F S M S E S L F C A N F D I S F S F L S L V C P K A F F V L I L I - V S L F S - V - Y V R K P F L C - F - Y K F L . . . . . . 87061 TTGTTTTGCAGGAAATCTGTCCAAAGCTGATTGCGGAGATTTTGAGCGAAAAATGCAGAA L F C R K S V Q S - L R R F - A K N A E C F A G N L S K A D C G D F E R K M Q K F V L Q E I C P K L I A E I L S E K C R . . . . . . 87121 GAAACCACCTACGGATCTTATGACGGTCCGTCGTGCATGTGACGGTCCGTAGGTGGCAGC E T T Y G S Y D G P S C M - R S V G G S K P P T D L M T V R R A C D G P - V A A R N H L R I L - R S V V H V T V R R W Q . . . . . . 87181 GCAGAGAAGCTGCTAAAGGAAGATGGGGAAGTCTGACCAAGTGTGGTATTACGAAGCTTG A E K L L K E D G E V - P S V V L R S L Q R S C - R K M G K S D Q V W Y Y E A C R R E A A K G R W G S L T K C G I T K L . . . . . . 87241 TGACGGTCCGTCATGGCTATGACGGTCTTTCCTGCAGGTTCATCGTGAAGATCAGAGAAG - R S V M A M T V F P A G S S - R S E K D G P S W L - R S F L Q V H R E D Q R S V T V R H G Y D G L S C R F I V K I R E . . . . . . 87301 TGATTCCAGTAACCAGATTCCAAGAGTTGAAGTATTTTGAAACGAGACCCTCGACGGACC - F Q - P D S K S - S I L K R D P R R T D S S N Q I P R V E V F - N E T L D G P V I P V T R F Q E L K Y F E T R P S T D . . . . . . 87361 GTTGTGCCTATGACGGTCCGTCACACTTGCCGTCGAGGGGAAGGAAGAAAGCAGCAGAAG V V P M T V R H T C R R G E G R K Q Q K L C L - R S V T L A V E G K E E S S R R R C A Y D G P S H L P S R G R K K A A E . . . . . . 87421 AAATTGCACCAAGCATGGGACGACGGAGTCCACGACGGTCCGTTATGACCACGACGGTCT K L H Q A W D D G V H D G P L - P R R S N C T K H G T T E S T T V R Y D H D G L E I A P S M G R R S P R R S V M T T T V . . . . . . 87481 GTCGCGTGGTCCGTTGACTCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCTTGT V A W S V D S A A F W Q I S S N - N P C S R G P L T Q P R F G R F P V I R I L V C R V V R - L S R V L A D F Q - L E S L . . . . . . 87541 TTAATTAGGTTTTTATTTTTTTATAAATAGTTCGAAAAACCTCATTTTTGAGGTTAGACT L I R F L F F Y K - F E K P H F - G - T - L G F Y F F I N S S K N L I F E V R L F N - V F I F L - I V R K T S F L R L D . . . . . . 87601 CTGGGAGATAAAACATCATATTATTAGACTTTGTGTTTGAGTGTTTGATTTTTAGAGATT L G D K T S Y Y - T L C L S V - F L E I W E I K H H I I R L C V - V F D F - R F S G R - N I I L L D F V F E C L I F R D . . . . . . 87661 CTTACAAGTGATTTTTGGTGATTAATCAAGCAATTTTTCGAACTTTACTCTTTCTCATTG L T S D F W - L I K Q F F E L Y S F S L L Q V I F G D - S S N F S N F T L S H - S Y K - F L V I N Q A I F R T L L F L I . . . . . . 87721 AAGTAAGTACATAAATTCTTATTTAATATATTTGAATATTTTGTTTATGGCTATGAGGAA K - V H K F L F N I F E Y F V Y G Y E E S K Y I N S Y L I Y L N I L F M A M R N E V S T - I L I - Y I - I F C L W L - G . . . . . . 87781 CTAAACTCCATAACTAGGGTTGTGGGAACCTAGGCAAATAATGAGATAAACCCTAGCTAA L N S I T R V V G T - A N N E I N P S - - T P - L G L W E P R Q I M R - T L A K T K L H N - G C G N L G K - - D K P - L . . . . . . 87841 AATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAGTCTTT N N N S R I V S C M Y - - F F R L E V F I T I L E - C L A C I N N S F A - K S F K - Q F - N S V L H V L I I L S L R S L . . . . . . 87901 TTAACGGATGATCAATGTTAGAACTCGCCTTAATGCTACTTGCCGGACCAAGGAGGTAGA L T D D Q C - N S P - C Y L P D Q G G R - R M I N V R T R L N A T C R T K E V D F N G - S M L E L A L M L L A G P R R - . . . . . . 87961 TAATAGGAAAAGAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTATTGA - - E K N Y - H R F S V Y Y L I G - Y - N R K R I I N I D L V Y T I - - A S I D I I G K E L L T - I - C I L S N R L V L . . . . . . 88021 TTGGTACGAGGTAATAACTTAGTCAAATATCGAATACGATGCTTAATATGAGGTAAAGAT L V R G N N L V K Y R I R C L I - G K D W Y E V I T - S N I E Y D A - Y E V K I I G T R - - L S Q I S N T M L N M R - R . . . . . . 88081 AAGGGTTAGGAAAGCAACACACGCAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATG K G - E S N T R S R T K V R S E I F - M R V R K A T H A A G P R C G V R F S R C - G L G K Q H T Q P D Q G A E - D F L D . . . . . . 88141 CCGGACCAAGGATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGAAAGA P D Q G F R N T - L I T L H A R Y - E R R T K D L E I H N L S L C M Q D T R K E A G P R I - K Y I T Y H F A C K I L G K . . . . . . 88201 ACTGTTATAGTTAGAATTACCAAGTTATGAACCTGTGGGAACACGTAAACCCTAGTTACT T V I V R I T K L - T C G N T - T L V T L L - L E L P S Y E P V G T R K P - L L N C Y S - N Y Q V M N L W E H V N P S Y . . . . . . 88261 TTGATTAATTGATTAAAACCCAAAATTAAAAGCTGTTAAGTGTCTCTGTCAAGTTCGTTA L I N - L K P K I K S C - V S L S S S L - L I D - N P K L K A V K C L C Q V R - F D - L I K T Q N - K L L S V S V K F V . . . . . . 88321 GTTATTTTCACTTATTAGGAAATAAAAACCCCCCTTTTTATGTTTTTACTTTCTAAGGAA V I F T Y - E I K T P L F M F L L S K E L F S L I R K - K P P F L C F Y F L R K S Y F H L L G N K N P P F Y V F T F - G . . . . . 88381 GTCATCAACCGAACAATAGTAATAACAAGTTGAAGTTAAGTCT V I N R T I V I T S - S - V S S T E Q - - - Q V E V K S S H Q P N N S N N K L K L S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1+_PGL-9_AGS-1_PPS_1 (87144 87497) (frame '0'; 351 bp, 117 residues) 1 RSVVHVTVRR WQRREAAKGR WGSLTKCGIT KLVTVRHGYD GLSCRFIVKI REVIPVTRFQ 61 ELKYFETRPS TDRCAYDGPS HLPSRGRKKA AEEIAPSMGR RSPRRSVMTT TVCRVVR- 3-phase translation of AGS-1 (-strand): . . . . . . 88423 AGACTTAACTTCAACTTGTTATTACTATTGTTCGGTTGATGACTTCCTTAGAAAGTAAAA R L N F N L L L L L F G - - L P - K V K D L T S T C Y Y Y C S V D D F L R K - K T - L Q L V I T I V R L M T S L E S K . . . . . . 88363 ACATAAAAAGGGGGGTTTTTATTTCCTAATAAGTGAAAATAACTAACGAACTTGACAGAG T - K G G F L F P N K - K - L T N L T E H K K G G F Y F L I S E N N - R T - Q R N I K R G V F I S - - V K I T N E L D R . . . . . . 88303 ACACTTAACAGCTTTTAATTTTGGGTTTTAATCAATTAATCAAAGTAACTAGGGTTTACG T L N S F - F W V L I N - S K - L G F T H L T A F N F G F - S I N Q S N - G L R D T - Q L L I L G F N Q L I K V T R V Y . . . . . . 88243 TGTTCCCACAGGTTCATAACTTGGTAATTCTAACTATAACAGTTCTTTCCTAGTATCTTG C S H R F I T W - F - L - Q F F P S I L V P T G S - L G N S N Y N S S F L V S C V F P Q V H N L V I L T I T V L S - Y L . . . . . . 88183 CATGCAAAGTGATAAGTTATGTATTTCTAAATCCTTGGTCCGGCATCTAGAAAATCTCAC H A K - - V M Y F - I L G P A S R K S H M Q S D K L C I S K S L V R H L E N L T A C K V I S Y V F L N P W S G I - K I S . . . . . . 88123 TCCGCACCTTGGTCCGGCTGCGTGTGTTGCTTTCCTAACCCTTATCTTTACCTCATATTA S A P W S G C V C C F P N P Y L Y L I L P H L G P A A C V A F L T L I F T S Y - L R T L V R L R V L L S - P L S L P H I . . . . . . 88063 AGCATCGTATTCGATATTTGACTAAGTTATTACCTCGTACCAATCAATACTAGCCTATTA S I V F D I - L S Y Y L V P I N T S L L A S Y S I F D - V I T S Y Q S I L A Y - K H R I R Y L T K L L P R T N Q Y - P I . . . . . . 88003 GATAGTATACACTAAATCTATGTTAATAATTCTTTTCCTATTATCTACCTCCTTGGTCCG D S I H - I Y V N N S F P I I Y L L G P I V Y T K S M L I I L F L L S T S L V R R - Y T L N L C - - F F S Y Y L P P W S . . . . . . 87943 GCAAGTAGCATTAAGGCGAGTTCTAACATTGATCATCCGTTAAAAAGACTTCTAAGCGAA A S S I K A S S N I D H P L K R L L S E Q V A L R R V L T L I I R - K D F - A K G K - H - G E F - H - S S V K K T S K R . . . . . . 87883 AGAATTATTAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGCTAGGGTTTATCT R I I N T C K T L F - N C Y F S - G L S E L L I H A R H Y S R I V I L A R V Y L K N Y - Y M Q D T I L E L L F - L G F I . . . . . . 87823 CATTATTTGCCTAGGTTCCCACAACCCTAGTTATGGAGTTTAGTTCCTCATAGCCATAAA H Y L P R F P Q P - L W S L V P H S H K I I C L G S H N P S Y G V - F L I A I N S L F A - V P T T L V M E F S S S - P - . . . . . . 87763 CAAAATATTCAAATATATTAAATAAGAATTTATGTACTTACTTCAATGAGAAAGAGTAAA Q N I Q I Y - I R I Y V L T S M R K S K K I F K Y I K - E F M Y L L Q - E R V K T K Y S N I L N K N L C T Y F N E K E - . . . . . . 87703 GTTCGAAAAATTGCTTGATTAATCACCAAAAATCACTTGTAAGAATCTCTAAAAATCAAA V R K I A - L I T K N H L - E S L K I K F E K L L D - S P K I T C K N L - K S N S S K N C L I N H Q K S L V R I S K N Q . . . . . . 87643 CACTCAAACACAAAGTCTAATAATATGATGTTTTATCTCCCAGAGTCTAACCTCAAAAAT H S N T K S N N M M F Y L P E S N L K N T Q T Q S L I I - C F I S Q S L T S K M T L K H K V - - Y D V L S P R V - P Q K . . . . . . 87583 GAGGTTTTTCGAACTATTTATAAAAAAATAAAAACCTAATTAAACAAGGATTCTAATTAC E V F R T I Y K K I K T - L N K D S N Y R F F E L F I K K - K P N - T R I L I T - G F S N Y L - K N K N L I K Q G F - L . . . . . . 87523 TGGAAATCTGCCAAAACGCGGCTGAGTCAACGGACCACGCGACAGACCGTCGTGGTCATA W K S A K T R L S Q R T T R Q T V V V I G N L P K R G - V N G P R D R P S W S - L E I C Q N A A E S T D H A T D R R G H . . . . . . 87463 ACGGACCGTCGTGGACTCCGTCGTCCCATGCTTGGTGCAATTTCTTCTGCTGCTTTCTTC T D R R G L R R P M L G A I S S A A F F R T V V D S V V P C L V Q F L L L L S S N G P S W T P S S H A W C N F F C C F L . . . . . . 87403 CTTCCCCTCGACGGCAAGTGTGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTC L P L D G K C D G P S - A Q R S V E G L F P S T A S V T D R H R H N G P S R V S P S P R R Q V - R T V I G T T V R R G S . . . . . . 87343 GTTTCAAAATACTTCAACTCTTGGAATCTGGTTACTGGAATCACTTCTCTGATCTTCACG V S K Y F N S W N L V T G I T S L I F T F Q N T S T L G I W L L E S L L - S S R R F K I L Q L L E S G Y W N H F S D L H . . . . . . 87283 ATGAACCTGCAGGAAAGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATACCA M N L Q E R P S - P - R T V T S F V I P - T C R K D R H S H D G P S Q A S - Y H D E P A G K T V I A M T D R H K L R N T . . . . . . 87223 CACTTGGTCAGACTTCCCCATCTTCCTTTAGCAGCTTCTCTGCGCTGCCACCTACGGACC H L V R L P H L P L A A S L R C H L R T T W S D F P I F L - Q L L C A A T Y G P T L G Q T S P S S F S S F S A L P P T D . . . . . . 87163 GTCACATGCACGACGGACCGTCATAAGATCCGTAGGTGGTTTCTTCTGCATTTTTCGCTC V T C T T D R H K I R R W F L L H F S L S H A R R T V I R S V G G F F C I F R S R H M H D G P S - D P - V V S S A F F A . . . . . . 87103 AAAATCTCCGCAATCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAA K I S A I S F G Q I S C K T K R N L Y Q K S P Q S A L D R F P A K Q R E T Y I K Q N L R N Q L W T D F L Q N K E K L I S . . . . . . 87043 AATTAGCACAAAAAAGGCTTTCGGACATACTAAACTTAAGAAAAAAGTATTAATTATATC N - H K K G F R T Y - T - E K S I N Y I I S T K K A F G H T K L K K K V L I I S K L A Q K R L S D I L N L R K K Y - L Y . . . . . 86983 GTGAAACCATGGTATATCAATACGTCATTTCCAAGTGTAAATT V K P W Y I N T S F P S V N - N H G I S I R H F Q V - I R E T M V Y Q Y V I S K C K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-9_AGS-1_PPS_1 (87380 87138) (frame '0'; 240 bp, 80 residues) 1 RTVIGTTVRR GSRFKILQLL ESGYWNHFSD LHDEPAGKTV IAMTDRHKLR NTTLGQTSPS 61 SFSSFSALPP TDRHMHDGPS - PGL 10 (+ strand): 89785 90108 AGS-1 (89785 90108) SCR (e 0.898) Exon 1 89785 90108 ( 324 n); score: 0.898 PGS (89785 90108) SGN-E548195+ PGS (89785 90108) SGN-E539285- PGS (89785 90107) SGN-E284128- 3-phase translation of AGS-1 (+strand): . . . . . . 89785 CATAACGTTGAGAAGTTATCGCTCTCAACTGCATTCACCATATCAACACAAGTAGATACC H N V E K L S L S T A F T I S T Q V D T I T L R S Y R S Q L H S P Y Q H K - I P - R - E V I A L N C I H H I N T S R Y . . . . . . 89845 ATAGTCAATTATAGACCACGACGTTTGTTACCACGAGCCAAAACTAAGGAACCCTTAATG I V N Y R P R R L L P R A K T K E P L M - S I I D H D V C Y H E P K L R N P - - H S Q L - T T T F V T T S Q N - G T L N . . . . . . 89905 AGCTTTCATTTTCCATCATCGTTGGTACTAACATATCTTTCATCATCTAAAACCCCAATA S F H F P S S L V L T Y L S S S K T P I A F I F H H R W Y - H I F H H L K P Q - E L S F S I I V G T N I S F I I - N P N . . . . . . 89965 AAAATTAGGTACAGACGAACATTAGGAGCATGTTTCATATTGTTCAAAACTAGTTTAGTT K I R Y R R T L G A C F I L F K T S L V K L G T D E H - E H V S Y C S K L V - F K N - V Q T N I R S M F H I V Q N - F S . . . . . . 90025 CCAACACTAGTTTCCAAACAAATTGTACCAATATCAACCACCCTAGAAAAAGTCTCATTA P T L V S K Q I V P I S T T L E K V S L Q H - F P N K L Y Q Y Q P P - K K S H Y S N T S F Q T N C T N I N H P R K S L I . . . 90085 CCCATACTCAAGGTTCAAAAATCA P I L K V Q K S P Y S R F K N T H T Q G S K I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1+_PGL-10_AGS-1_PPS_1 (89785 90108) (frame '1'; 324 bp, 108 residues) 1 HNVEKLSLST AFTISTQVDT IVNYRPRRLL PRAKTKEPLM SFHFPSSLVL TYLSSSKTPI 61 KIRYRRTLGA CFILFKTSLV PTLVSKQIVP ISTTLEKVSL PILKVQKS 3-phase translation of AGS-1 (-strand): . . . . . . 90108 TGATTTTTGAACCTTGAGTATGGGTAATGAGACTTTTTCTAGGGTGGTTGATATTGGTAC - F L N L E Y G - - D F F - G G - Y W Y D F - T L S M G N E T F S R V V D I G T I F E P - V W V M R L F L G W L I L V . . . . . . 90048 AATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATATGAAACATGCTCC N L F G N - C W N - T S F E Q Y E T C S I C L E T S V G T K L V L N N M K H A P Q F V W K L V L E L N - F - T I - N M L . . . . . . 89988 TAATGTTCGTCTGTACCTAATTTTTATTGGGGTTTTAGATGATGAAAGATATGTTAGTAC - C S S V P N F Y W G F R - - K I C - Y N V R L Y L I F I G V L D D E R Y V S T L M F V C T - F L L G F - M M K D M L V . . . . . . 89928 CAACGATGATGGAAAATGAAAGCTCATTAAGGGTTCCTTAGTTTTGGCTCGTGGTAACAA Q R - W K M K A H - G F L S F G S W - Q N D D G K - K L I K G S L V L A R G N K P T M M E N E S S L R V P - F W L V V T . . . . . . 89868 ACGTCGTGGTCTATAATTGACTATGGTATCTACTTGTGTTGATATGGTGAATGCAGTTGA T S W S I I D Y G I Y L C - Y G E C S - R R G L - L T M V S T C V D M V N A V E N V V V Y N - L W Y L L V L I W - M Q L . . . 89808 GAGCGATAACTTCTCAACGTTATG E R - L L N V M S D N F S T L R A I T S Q R Y Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 91498 91163 AGS-1 (91498 91163) SCR (e 0.902) Exon 1 91498 91163 ( 336 n); score: 0.902 PGS (91498 91163) SGN-E545704- PGS (91498 91163) SGN-E545705+ PGS (91497 91163) SGN-E539303- PGS (91497 91163) SGN-E539305- PGS (91497 91163) SGN-E539306+ PGS (91497 91163) SGN-E539307+ PGS (91497 91163) SGN-E312478+ PGS (91496 91163) SGN-E283859+ PGS (91493 91163) SGN-E311797+ PGS (91481 91163) SGN-E312601+ PGS (91497 91289) SGN-E539323+ PGS (91496 91291) SGN-E283948+ 3-phase translation of AGS-1 (-strand): . . . . . . 91498 AGAAAAACCATTTTGAGAGCAAACTGAGGTATTCATAGACTATACAAGAAAAATAGTATG R K T I L R A N - G I H R L Y K K N S M E K P F - E Q T E V F I D Y T R K I V C K N H F E S K L R Y S - T I Q E K - Y . . . . . . 91438 TGAAGAAAAATAGAGTGCGAACGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTTTCC - R K I E C E R Y F S K V E T K R V F S E E K - S A N D I L V R W K P K E C F P V K K N R V R T I F - - G G N Q K S V F . . . . . . 91378 TTTTCAGTGTGTAGTAGTCACTTTGAGTATTGTATTCTTGACTACACAGTGTAAAATTCC F S V C S S H F E Y C I L D Y T V - N S F Q C V V V T L S I V F L T T Q C K I P L F S V - - S L - V L Y S - L H S V K F . . . . . . 91318 TTATTATAGTGATACCAGTTGCTCCTCTTGGCCTATGGTTTTTTTCCCTTTATTTAGAAG L L - - Y Q L L L L A Y G F F P F I - K Y Y S D T S C S S W P M V F F P L F R R L I I V I P V A P L G L W F F S L Y L E . . . . . . 91258 GGTTTCCACGTAAAATTCTTGGTGTCATTATTTTCTCATTTTATTTCCATTACTTTTACT G F H V K F L V S L F S H F I S I T F T V S T - N S W C H Y F L I L F P L L L L G F P R K I L G V I I F S F Y F H Y F Y . . . . 91198 TTATATATTTTTGTGTTTGTCCGCATTTTCCCAACA L Y I F V F V R I F P T Y I F L C L S A F S Q F I Y F C V C P H F P N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 91163 TGTTGGGAAAATGCGGACAAACACAAAAATATATAAAGTAAAAGTAATGGAAATAAAATG C W E N A D K H K N I - S K S N G N K M V G K M R T N T K I Y K V K V M E I K - L G K C G Q T Q K Y I K - K - W K - N . . . . . . 91223 AGAAAATAATGACACCAAGAATTTTACGTGGAAACCCTTCTAAATAAAGGGAAAAAAACC R K - - H Q E F Y V E T L L N K G K K T E N N D T K N F T W K P F - I K G K K P E K I M T P R I L R G N P S K - R E K N . . . . . . 91283 ATAGGCCAAGAGGAGCAACTGGTATCACTATAATAAGGAATTTTACACTGTGTAGTCAAG I G Q E E Q L V S L - - G I L H C V V K - A K R S N W Y H Y N K E F Y T V - S R H R P R G A T G I T I I R N F T L C S Q . . . . . . 91343 AATACAATACTCAAAGTGACTACTACACACTGAAAAGGAAAACACTCTTTTGGTTTCCAC N T I L K V T T T H - K G K H S F G F H I Q Y S K - L L H T E K E N T L L V S T E Y N T Q S D Y Y T L K R K T L F W F P . . . . . . 91403 CTTACTAAAATATCGTTCGCACTCTATTTTTCTTCACATACTATTTTTCTTGTATAGTCT L T K I S F A L Y F S S H T I F L V - S L L K Y R S H S I F L H I L F F L Y S L P Y - N I V R T L F F F T Y Y F S C I V . . . . 91463 ATGAATACCTCAGTTTGCTCTCAAAATGGTTTTTCT M N T S V C S Q N G F S - I P Q F A L K M V F Y E Y L S L L S K W F F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (- strand): 93436 93115 AGS-1 (93436 93115) SCR (e 0.904) Exon 1 93436 93115 ( 322 n); score: 0.904 PGS (93436 93115) SGN-E540411+ PGS (93337 93115) SGN-E540414- PGS (93434 93126) SGN-E540411- 3-phase translation of AGS-1 (-strand): . . . . . . 93436 AAGGGATAATGTACAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATA K G - C T S T P S T Y A R N L R D T L I R D N V Q V P P Q P M P E I S E T H L Y G I M Y K Y P L N L C P K S Q R H T Y . . . . . . 93376 CTATACTAAGGTCTTATTACACCCCTTAACTTATTTTACAAGTAATTTTCTACCCCTTTT L Y - G L I T P L N L F Y K - F S T P F Y T K V L L H P L T Y F T S N F L P L F T I L R S Y Y T P - L I L Q V I F Y P F . . . . . . 93316 TAGCCTACGTGGAACTAGTTTGAAAAAAAAGTCAACCATCGTTGGGCCCACAAGATAATG - P T W N - F E K K V N H R W A H K I M S L R G T S L K K K S T I V G P T R - C L A Y V E L V - K K S Q P S L G P Q D N . . . . . . 93256 CCACGTAGGTCGAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGGTAATAG P R R S K R G K K L L I K - V Q G G - - H V G R K G V K N Y - - N K F R G G N R A T - V E K G - K I I N K I S S G G V I . . . . . . 93196 GACCTTAGTGTAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTAAGAGGGTACTTG D L S V V - V C L - D F G H R L R G Y L T L V - Y K C V S E I S G I G - E G T W G P - C S I S V S L R F R A - V K R V L . . . 93136 GGCATTATCCCAAAAAGGAAAG G I I P K R K A L S Q K G K G H Y P K K E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 93115 CTTTCCTTTTTGGGATAATGCCCAAGTACCCTCTTAACCTATGCCCGAAATCTCAGAGAC L S F L G - C P S T L L T Y A R N L R D F P F W D N A Q V P S - P M P E I S E T F L F G I M P K Y P L N L C P K S Q R . . . . . . 93175 ACACTTATACTACACTAAGGTCCTATTACCCCCCCTGAACTTATTTTATTAATAATTTTT T L I L H - G P I T P P E L I L L I I F H L Y Y T K V L L P P L N L F Y - - F F H T Y T T L R S Y Y P P - T Y F I N N F . . . . . . 93235 TACCCCTTTTCGACCTACGTGGCATTATCTTGTGGGCCCAACGATGGTTGACTTTTTTTT Y P F S T Y V A L S C G P N D G - L F F T P F R P T W H Y L V G P T M V D F F F L P L F D L R G I I L W A Q R W L T F F . . . . . . 93295 CAAACTAGTTCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTGTAAAATAAGTTAAGGG Q T S S T - A K K G - K I T C K I S - G K L V P R R L K R G R K L L V K - V K G S N - F H V G - K G V E N Y L - N K L R . . . . . . 93355 GTGTAATAAGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGG V - - D L S I V - V C L - D F G H R L R C N K T L V - Y K C V S E I S G I G - G G V I R P - Y S I S V S L R F R A - V E . . . 93415 GGGTACTTGTACATTATCCCTT G Y L Y I I P G T C T L S L G V L V H Y P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 97565 97886 AGS-1 (97565 97886) SCR (e 0.809) Exon 1 97565 97886 ( 322 n); score: 0.809 PGS (97565 97886) SGN-E378946+ 3-phase translation of AGS-1 (+strand): . . . . . . 97565 TTTAATAAAGACTCTTGAAACTTTAAGAACTTTTCTTTGACTTACTTTTTAACGTCTAAA F N K D S - N F K N F S L T Y F L T S K L I K T L E T L R T F L - L T F - R L N - - R L L K L - E L F F D L L F N V - . . . . . . 97625 CGTAACTCTTAACTTTCCTTGAATTGAAGTATATATTCAAGGTTCATGATCTCATGTTTA R N S - L S L N - S I Y S R F M I S C L V T L N F P - I E V Y I Q G S - S H V Y T - L L T F L E L K Y I F K V H D L M F . . . . . . 97685 TGGATGATTTCATGATTTTCAACTTGGAGGATTCATGCGAAATTATGAGCATGAACTACT W M I S - F S T W R I H A K L - A - T T G - F H D F Q L G G F M R N Y E H E L L M D D F M I F N L E D S C E I M S M N Y . . . . . . 97745 CAACTCGAGAACCCAAAGGTACTTATCATCTCAAGATTATTCGACTTATAGGGTTTATGT Q L E N P K V L I I S R L F D L - G L C N S R T Q R Y L S S Q D Y S T Y R V Y V S T R E P K G T Y H L K I I R L I G F M . . . . . . 97805 GAAATTATGGGCATGAACAATTCAACTCAAGGATTTCATGGGTCACATGAAATAGTCCCA E I M G M N N S T Q G F H G S H E I V P K L W A - T I Q L K D F M G H M K - S H - N Y G H E Q F N S R I S W V T - N S P . . . 97865 TGATTAGAAATATAATTTCAAA - L E I - F Q D - K Y N F K M I R N I I S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 97886 TTTGAAATTATATTTCTAATCATGGGACTATTTCATGTGACCCATGAAATCCTTGAGTTG F E I I F L I M G L F H V T H E I L E L L K L Y F - S W D Y F M - P M K S L S - - N Y I S N H G T I S C D P - N P - V . . . . . . 97826 AATTGTTCATGCCCATAATTTCACATAAACCCTATAAGTCGAATAATCTTGAGATGATAA N C S C P - F H I N P I S R I I L R - - I V H A H N F T - T L - V E - S - D D K E L F M P I I S H K P Y K S N N L E M I . . . . . . 97766 GTACCTTTGGGTTCTCGAGTTGAGTAGTTCATGCTCATAATTTCGCATGAATCCTCCAAG V P L G S R V E - F M L I I S H E S S K Y L W V L E L S S S C S - F R M N P P S S T F G F S S - V V H A H N F A - I L Q . . . . . . 97706 TTGAAAATCATGAAATCATCCATAAACATGAGATCATGAACCTTGAATATATACTTCAAT L K I M K S S I N M R S - T L N I Y F N - K S - N H P - T - D H E P - I Y T S I V E N H E I I H K H E I M N L E Y I L Q . . . . . . 97646 TCAAGGAAAGTTAAGAGTTACGTTTAGACGTTAAAAAGTAAGTCAAAGAAAAGTTCTTAA S R K V K S Y V - T L K S K S K K S S - Q G K L R V T F R R - K V S Q R K V L K F K E S - E L R L D V K K - V K E K F L . . . 97586 AGTTTCAAGAGTCTTTATTAAA S F K S L Y - V S R V F I K K F Q E S L L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 103042 104168 AGS-1 (103042 103197,103597 103635,104140 104168) SCR (e 0.785 d 0.000 a 0.000,e 0.641 d 0.000 a 0.000,e 0.862) Exon 1 103042 103197 ( 156 n); score: 0.785 Intron 1 103198 103596 ( 399 n); Pd: 0.000 Pa: 0.000 Exon 2 103597 103635 ( 39 n); score: 0.641 Intron 2 103636 104139 ( 504 n); Pd: 0.000 Pa: 0.000 Exon 3 104140 104168 ( 29 n); score: 0.862 PGS (103042 103197,103597 103635,104140 104168) SGN-E578389+ 3-phase translation of AGS-1 (+strand): . . . . . . 103042 TGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCTTGTTA W E K G L I Y P S T L S F R A D I P L L G K R V - Y T P Q L C H L E L I Y P C Y G K G S D I P L N F V I - S - Y T L V . . . . . . 103102 TGAAAGTGGCTCATATATACCCCTACTTGTAAACAAATGGCTCACATATATCCTTTTCCT - K W L I Y T P T C K Q M A H I Y P F P E S G S Y I P L L V N K W L T Y I L F L M K V A H I Y P Y L - T N G S H I S F S . . . . : . . 103162 CTAACGGAAATGAAAAAAATAATAATTTTAATCTAA : TGAAGGAATAAATATAAATTTAAA L T E M K K I I I L I - : - R N K Y K F K - R K - K K - - F - S N : E G I N I N L K S N G N E K N N N F N L : M K E - I - I - . . : . . . 103621 ACTAATTTTTTAACT : TTAATTTTTAAAAAAAATGATATCTAGGT T N F L T : L I F K K N D I - L I F - L : - F L K K M I S R N - F F N : F N F - K K - Y L G Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (103264 103630,103679 103705,103743 103786) SCR (e 0.881 d 0.000 a 0.550,e 0.667 d 0.000 a 0.000,e 0.705) Exon 1 103264 103630 ( 367 n); score: 0.881 Intron 1 103631 103678 ( 48 n); Pd: 0.000 Pa: 0.550 Exon 2 103679 103705 ( 27 n); score: 0.667 Intron 2 103706 103742 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 3 103743 103786 ( 44 n); score: 0.705 PGS (103264 103630,103679 103705,103743 103786) SGN-E542827+ 3-phase translation of AGS-2 (+strand): . . . . . . 103264 TTTTGATTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATATAT F - F F L F Q - L I Y N Y Y F D N Q I Y F D F F C F N D - F I I I I L I I K Y I L I F F V S M T N L - L L F - - S N I . . . . . . 103324 TTAGGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTATTCGAAT L G F T N I L V K L I V D D Q I F Y S N - V S L I F L - N L L - M T K F F I R I F R F H - Y S C K T Y C R - P N F L F E . . . . . . 103384 ACGAAATTAAATTACAATACATACAAAAGAAATAGTTTTATTTTTTTCTCTTTAAACTAA T K L N Y N T Y K R N S F I F F S L N - R N - I T I H T K E I V L F F S L - T K Y E I K L Q Y I Q K K - F Y F F L F K L . . . . . . 103444 GGAATATAAGAAAAAACCAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTC G I - E K T K - E - E T Q I I I I K E V E Y K K K P N K N K K L K - L - - K K S R N I R K N Q I R I R N S N N Y N K R S . . . . . . 103504 AAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCA K K - F M Y E K N - N I P - T L I E E S K N N L C M K K I K I Y L E L - - K N H Q K I I Y V - K K L K Y T L N F D R R I . . . . . . 103564 TATATACCCCTAAATAATTTTTAAAAAAAAATTTGAAGGAATAAATATAAATTTAAAACT Y I P L N N F - K K I - R N K Y K F K T I Y P - I I F K K K F E G I N I N L K L I Y T P K - F L K K N L K E - I - I - N . : . . . : . . 103624 AATTTTT : GGGTATATGTAAGCCGTTTGTATAACA : ATATCAGCTCTAAATGACAAAGTTGA N F : W V Y V S R L Y N : N I S S K - Q S - I F : G Y M - A V C I T : I S A L N D K V E - F L : G I C K P F V - Q : Y Q L - M T K L . . 103769 GGGGTATATCAGACCCTT G V Y Q T L G Y I R P R G I S D P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (103352 103792) SCR (e 0.905) Exon 1 103352 103792 ( 441 n); score: 0.905 PGS (103352 103786) SGN-E243215+ PGS (103479 103792) SGN-E578389- 3-phase translation of AGS-3 (+strand): . . . . . . 103352 TTATTGTAGATGACCAAATTTTTTATTCGAATACGAAATTAAATTACAATACATACAAAA L L - M T K F F I R I R N - I T I H T K Y C R - P N F L F E Y E I K L Q Y I Q K I V D D Q I F Y S N T K L N Y N T Y K . . . . . . 103412 GAAATAGTTTTATTTTTTTCTCTTTAAACTAAGGAATATAAGAAAAAACCAAATAAGAAT E I V L F F S L - T K E Y K K K P N K N K - F Y F F L F K L R N I R K N Q I R I R N S F I F F S L N - G I - E K T K - E . . . . . . 103472 AAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATT K K L K - L - - K K S K N N L C M K K I R N S N N Y N K R S Q K I I Y V - K K L - E T Q I I I I K E V K K - F M Y E K N . . . . . . 103532 AAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTAAAAAA K I Y L E L - - K N H I Y P - I I F K K K Y T L N F D R R I I Y T P K - F L K K - N I P - T L I E E S Y I P L N N F - K . . . . . . 103592 AAATTTGAAGGAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGG K F E G I N I N L K L I F - L P L N E G N L K E - I - I - N - F F N F R - M K G K I - R N K Y K F K T N F L T S V K - R . . . . . . 103652 TATATGTGACTCATTTTGTAACGCCAGGGGTATATGTAAGCCGTTTGTATAACAGTAAGG Y M - L I L - R Q G Y M - A V C I T V R I C D S F C N A R G I C K P F V - Q - G V Y V T H F V T P G V Y V S R L Y N S K . . . . . . 103712 ACATATATGAGTAACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGG T Y M S N F Y N E G Y I S S K - Q S - G H I - V T F I T R D I S A L N D K V E G D I Y E - L L - R G I Y Q L - M T K L R . . . 103772 GTATATCAGACCCTTATCCCT V Y Q T L I P Y I R P L S G I S D P Y P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 103792 AGGGATAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATATCCCTCGTT R D K G L I Y P S T L S F R A D I S L V G I R V - Y T P Q L C H L E L I Y P S L G - G S D I P L N F V I - S - Y I P R . . . . . . 103732 ATAAAAGTTACTCATATATGTCCTTACTGTTATACAAACGGCTTACATATACCCCTGGCG I K V T H I C P Y C Y T N G L H I P L A - K L L I Y V L T V I Q T A Y I Y P W R Y K S Y S Y M S L L L Y K R L T Y T P G . . . . . . 103672 TTACAAAATGAGTCACATATACCCTTCATTTAACGGAAGTTAAAAAATTAGTTTTAAATT L Q N E S H I P F I - R K L K N - F - I Y K M S H I Y P S F N G S - K I S F K F V T K - V T Y T L H L T E V K K L V L N . . . . . . 103612 TATATTTATTCCTTCAAATTTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTCTA Y I Y S F K F F F K N Y L G V Y M I L L I F I P S N F F L K I I - G Y I - F F Y L Y L F L Q I F F - K L F R G I Y D S S . . . . . . 103552 TCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGACTTCTTTTA S K F K V Y F N F F H T - I I F - L L L Q S S R Y I L I F F I H K L F F D F F Y I K V Q G I F - F F S Y I N Y F L T S F . . . . . . 103492 TTATAATTATTTGAGTTTCTTATTCTTATTTGGTTTTTTCTTATATTCCTTAGTTTAAAG L - L F E F L I L I W F F L I F L S L K Y N Y L S F L F L F G F F L Y S L V - R I I I I - V S Y S Y L V F S Y I P - F K . . . . . . 103432 AGAAAAAAATAAAACTATTTCTTTTGTATGTATTGTAATTTAATTTCGTATTCGAATAAA R K K - N Y F F C M Y C N L I S Y S N K E K N K T I S F V C I V I - F R I R I K E K K I K L F L L Y V L - F N F V F E - . . . 103372 AAATTTGGTCATCTACAATAA K F G H L Q - N L V I Y N K I W S S T I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (- strand): 125175 119616 AGS-1 (125175 124937,123469 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120734,120430 120224,120044 119616) SCR (e 1.000 d 0.999 a 0.994,e 1.000 d 1.000 a 0.995,e 1.000 d 0.992 a 0.888,e 1.000 d 0.885 a 0.996,e 1.000 d 0.812 a 0.994,e 1.000 d 0.928 a 0.853,e 1.000 d 0.998 a 0.997,e 1.000 d 0.984 a 0.986,e 1.000) Exon 1 125175 124937 ( 239 n); score: 1.000 Intron 1 124936 123470 (1467 n); Pd: 0.999 Pa: 0.994 Exon 2 123469 123305 ( 165 n); score: 1.000 Intron 2 123304 123155 ( 150 n); Pd: 1.000 Pa: 0.995 Exon 3 123154 122998 ( 157 n); score: 1.000 Intron 3 122997 122216 ( 782 n); Pd: 0.992 Pa: 0.888 Exon 4 122215 122130 ( 86 n); score: 1.000 Intron 4 122129 122032 ( 98 n); Pd: 0.885 Pa: 0.996 Exon 5 122031 121832 ( 200 n); score: 1.000 Intron 5 121831 121278 ( 554 n); Pd: 0.812 Pa: 0.994 Exon 6 121277 121229 ( 49 n); score: 1.000 Intron 6 121228 120941 ( 288 n); Pd: 0.928 Pa: 0.853 Exon 7 120940 120734 ( 207 n); score: 1.000 Intron 7 120733 120431 ( 303 n); Pd: 0.998 Pa: 0.997 Exon 8 120430 120224 ( 207 n); score: 1.000 Intron 8 120223 120045 ( 179 n); Pd: 0.984 Pa: 0.986 Exon 9 120044 119616 ( 429 n); score: 1.000 PGS (120405 120224,120044 119616) SGN-E396148- PGS (120356 120224,120044 119642) SGN-E369712- PGS (119921 119745) SGN-E299631- PGS (120407 120224,120044 119786) SGN-E239794+ PGS (121256 121229,120940 120734,120430 120224,120044 119887) SGN-E244444+ PGS (123032 122998,122215 122130,122031 121832,121277 121229,120940 120734,120430 120396) SGN-E390162+ PGS (121971 121832,121277 121229,120940 120793) SGN-E275360+ PGS (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120800) SGN-E248815+ PGS (122174 122130,122031 121832,121277 121229,120940 120800) SGN-E294970+ PGS (123323 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120827) SGN-E369713+ PGS (123127 122998,122215 122130,122031 121832,121277 121229,120940 120869) SGN-E331090+ PGS (123124 122998,122215 122130,122031 121832,121277 121229,120940 120876) SGN-E248588+ PGS (123469 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120910) SGN-E340090+ PGS (123074 122998,122215 122130,122031 121832,121277 121244) SGN-E274464+ PGS (123437 123305,123154 122998,122215 122130,122031 121832) SGN-E299630+ PGS (123424 123305,123154 122998,122215 122130,122031 121874) SGN-E276780+ PGS (125062 124937,123469 123305,123154 122998,122215 122130,122031 121937) SGN-E346003+ PGS (125062 124937,123469 123305,123154 122998,122215 122130,122031 121980) SGN-E346138+ PGS (125135 124937,123469 123305,123154 122998,122215 122130,122031 122026) SGN-E321047+ PGS (125062 124937,123469 123305,123154 122998,122215 122130) SGN-E309925+ PGS (125062 124937,123469 123305,123154 122998,122215 122141) SGN-E245817+ PGS (125130 124937,123469 123305,123154 122998,122215 122151) SGN-E331426+ PGS (125062 124937,123469 123305,123154 122998,122215 122154) SGN-E287822+ PGS (125162 124937,123469 123305,123154 122998) SGN-E341488+ PGS (125149 124937,123469 123305,123154 122998) SGN-E309784+ PGS (125153 124937,123469 123305,123154 123014) SGN-E252101+ PGS (125062 124937,123469 123305,123154 123027) SGN-E269430+ PGS (125062 124937,123469 123305,123154 123056) SGN-E282515+ PGS (125175 124987) SGN-E333945+ 3-phase translation of AGS-1 (-strand): . . . . . . 125175 AACAACACTCTTGTTTTTTTAATTGTATTATCGGAGCTCGGATAATGAATCGTTCCGTCG N N T L V F L I V L S E L G - - I V P S T T L L F F - L Y Y R S S D N E S F R R Q H S C F F N C I I G A R I M N R S V . . . . . . 125115 CCGGAGTTTTGTTCCTGATTGCGCTCTCGTTAAACGTCTCCGTTTCCGAGAGCCGTAATT P E F C S - L R S R - T S P F P R A V I R S F V P D C A L V K R L R F R E P - F A G V L F L I A L S L N V S V S E S R N . . . . . . 125055 TTTTGAAACTTCCGTCTGAAGGTTCTAGATTCTTCGATGCCGATGAGATCGACTCCGTCG F - N F R L K V L D S S M P M R S T P S F E T S V - R F - I L R C R - D R L R R F L K L P S E G S R F F D A D E I D S V . . . . . . : 124995 GTACTAGATGGGCTATTTTGCTTGCCGGATCAAACGGTTATTGGAATTACCGTCACCAG : G V L D G L F C L P D Q T V I G I T V T R : Y - M G Y F A C R I K R L L E L P S P : G G T R W A I L L A G S N G Y W N Y R H Q : . . . . . . 123468 CTGATATATGTCATGCATATCAACTGTTGAAGAAGGGTGGTCTCAAAGATGAGAACATTG L I Y V M H I N C - R R V V S K M R T L - Y M S C I S T V E E G W S Q R - E H C A D I C H A Y Q L L K K G G L K D E N I . . . . . . 123408 TTGTGTTCATGTATGATGACATTGCAAACAATGAAGAGAACCCAAGGCAAGGAGTTATCA L C S C M M T L Q T M K R T Q G K E L S C V H V - - H C K Q - R E P K A R S Y H V V F M Y D D I A N N E E N P R Q G V I . . . . . : . 123348 TTAATAGCCCTCATGGTGAGGATGTTTACAACGGAGTACCTAAG : GATTACACGGGGGATG L I A L M V R M F T T E Y L R : I T R G M - - P S W - G C L Q R S T - : G L H G G - I N S P H G E D V Y N G V P K : D Y T G D . . . . . . 123138 ATGTTACTGTTGACAACTTTCTTGCTGCTCTCCTTGGGAACAAAACTGCACTTACCGGAG M L L L T T F L L L S L G T K L H L P E C Y C - Q L S C C S P W E Q N C T Y R R D V T V D N F L A A L L G N K T A L T G . . . . . . 123078 GCAGTGGAAAGGTTGTAGATAGTGGTCCAAATGATCATATCTTCATCTTTTATAGTGATC A V E R L - I V V Q M I I S S S F I V I Q W K G C R - W S K - S Y L H L L - - S G S G K V V D S G P N D H I F I F Y S D . . . : . . . 123018 ATGGAGGTGCTGGAGTGCTTG : GAATGCCTACCAATCCTTACCTCTATGCAAATGATCTGA M E V L E C L : E C L P I L T S M Q M I - W R C W S A W : N A Y Q S L P L C K - S D H G G A G V L : G M P T N P Y L Y A N D L . . . . . : . 122176 TTGATGCTCTGAAAATGAAGCATGCTTCGGGAACATACAAAAGCTTG : GTATTTTACCTTG L M L - K - S M L R E H T K A W : Y F T L - C S E N E A C F G N I Q K L : G I L P - I D A L K M K H A S G T Y K S L : V F Y L . . . . . . 122018 AAGCTTGTGAGTCTGGAAGTATGTTTGAGGGTCTTCTTCCTGAAGGTTTAAACATCTATG K L V S L E V C L R V F F L K V - T S M S L - V W K Y V - G S S S - R F K H L C E A C E S G S M F E G L L P E G L N I Y . . . . . . 121958 CCACAACAGCATCAAATGCTGATGAGAGCAGCTGGGGAACCTATTGCCCAGGGGAGTACC P Q Q H Q M L M R A A G E P I A Q G S T H N S I K C - - E Q L G N L L P R G V P A T T A S N A D E S S W G T Y C P G E Y . . . . . . 121898 CTAGTCCTCCTATCGAATATGACACCTGCCTGGGTGACTTGTATAGTATTTCCTGGATGG L V L L S N M T P A W V T C I V F P G W - S S Y R I - H L P G - L V - Y F L D G P S P P I E Y D T C L G D L Y S I S W M . : . . . . . : 121838 AGGACAG : TGAAAGACACAACCTGCGGACTGAAAGTTTGAAGCAGCAATATCACCTG : GTCA R T : V K D T T C G L K V - S S N I T W : S G Q : - K T Q P A D - K F E A A I S P : G Q E D S : E R H N L R T E S L K Q Q Y H L : V . . . . . . 120936 AAGAGAGAACTGCCAGTGGGAATCCTGCCTATGGTTCGCATGTCATGCAATATGGTGATG K R E L P V G I L P M V R M S C N M V M R E N C Q W E S C L W F A C H A I W - C K E R T A S G N P A Y G S H V M Q Y G D . . . . . . 120876 TACATCTCAGCAAGGATGCTGTATTCCTATATATGGGTACCGATCCTGCAAATGATAATT Y I S A R M L Y S Y I W V P I L Q M I I T S Q Q G C C I P I Y G Y R S C K - - F V H L S K D A V F L Y M G T D P A N D N . . . . . . 120816 CTACTTTTATGGATGACAATTCCTTGCGAGTATCAAAGGCTGTAAACCAGCGTGATGCAG L L L W M T I P C E Y Q R L - T S V M Q Y F Y G - Q F L A S I K G C K P A - C R S T F M D D N S L R V S K A V N Q R D A . . . : . . . 120756 ATCTTGTGCATTTCTGGTACAAG : TTCCACAAGGCTCCTGAAGGCTCTGTTAGCAAAACTG I L C I S G T S : S T R L L K A L L A K L S C A F L V Q : V P Q G S - R L C - Q N - D L V H F W Y K : F H K A P E G S V S K T . . . . . . 120393 AGGCTCAGAAACGCTTAAATGAAGCAATATCACATAGAATGCACTTAGATAACAGCATAG R L R N A - M K Q Y H I E C T - I T A - G S E T L K - S N I T - N A L R - Q H S E A Q K R L N E A I S H R M H L D N S I . . . . . . 120333 CCCTTGTCGGTAAGCTTTTGTTTGGAATTAAAAAAGGTCCAGAGGTGCTGACTAGTGTCC P L S V S F C L E L K K V Q R C - L V S P C R - A F V W N - K R S R G A D - C P A L V G K L L F G I K K G P E V L T S V . . . . . : . 120273 GCCCTGCTGGTCAGCCGCTTGTTGACAATTGGGACTGTCTTAAATCTTAT : GTAAGAACAT A L L V S R L L T I G T V L N L M : - E H P C W S A A C - Q L G L S - I L : C K N I R P A G Q P L V D N W D C L K S Y : V R T . . . . . . 120034 TTGAAACACATTGTGGATCGTTATCTCAGTATGGAATGAAACATATGCGCTCTGTTGCTA L K H I V D R Y L S M E - N I C A L L L - N T L W I V I S V W N E T Y A L C C - F E T H C G S L S Q Y G M K H M R S V A . . . . . . 119974 ACATATGCAACGCTGGAATTAAAATGGAGCAGATGGTGGAGGCATCGGCACAAGCTTGTC T Y A T L E L K W S R W W R H R H K L V H M Q R W N - N G A D G G G I G T S L S N I C N A G I K M E Q M V E A S A Q A C . . . . . . 119914 CCAGTGTTCCATCCTATACCTGGAGTTCCCTCCACAGGGGTTTTAGTGCATGATTGGCAT P V F H P I P G V P S T G V L V H D W H Q C S I L Y L E F P P Q G F - C M I G M P S V P S Y T W S S L H R G F S A - L A . . . . . . 119854 GTAATGCGAAATATGCACGCCTAGATGCTACCAAAATTATCCGTAATTATCAGTATGAAG V M R N M H A - M L P K L S V I I S M K - C E I C T P R C Y Q N Y P - L S V - R C N A K Y A R L D A T K I I R N Y Q Y E . . . . . . 119794 ATTGATATGGTTGTTTGCTAGTGTAATTGCTTCCTTGTAAATACAGTTTAGAAGCACATC I D M V V C - C N C F L V N T V - K H I L I W L F A S V I A S L - I Q F R S T S D - Y G C L L V - L L P C K Y S L E A H . . . . . . 119734 AATATTGAGTGGAAATGTACTAGATGAACATTTCTTATTGTAAATATTGTTATAGTTGGT N I E W K C T R - T F L I V N I V I V G I L S G N V L D E H F L L - I L L - L V Q Y - V E M Y - M N I S Y C K Y C Y S W . . . . . . 119674 GATCATTGTAAATAACTCATTACTATGCAAAAAGTTCTACCTGAACAAACTTTCTTTCA D H C K - L I T M Q K V L P E Q T F F I I V N N S L L C K K F Y L N K L S F - S L - I T H Y Y A K S S T - T N F L S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-15_AGS-1_PPS_1 (125173 124937,123469 123305,123154 122998,122215 122130,122031 121832,121277 121229,120940 120734,120430 120224,120044 119862) (frame '0'; 1488 bp, 496 residues) 1 QHSCFFNCII GARIMNRSVA GVLFLIALSL NVSVSESRNF LKLPSEGSRF FDADEIDSVG 61 TRWAILLAGS NGYWNYRHQA DICHAYQLLK KGGLKDENIV VFMYDDIANN EENPRQGVII 121 NSPHGEDVYN GVPKDYTGDD VTVDNFLAAL LGNKTALTGG SGKVVDSGPN DHIFIFYSDH 181 GGAGVLGMPT NPYLYANDLI DALKMKHASG TYKSLVFYLE ACESGSMFEG LLPEGLNIYA 241 TTASNADESS WGTYCPGEYP SPPIEYDTCL GDLYSISWME DSERHNLRTE SLKQQYHLVK 301 ERTASGNPAY GSHVMQYGDV HLSKDAVFLY MGTDPANDNS TFMDDNSLRV SKAVNQRDAD 361 LVHFWYKFHK APEGSVSKTE AQKRLNEAIS HRMHLDNSIA LVGKLLFGIK KGPEVLTSVR 421 PAGQPLVDNW DCLKSYVRTF ETHCGSLSQY GMKHMRSVAN ICNAGIKMEQ MVEASAQACP 481 SVPSYTWSSL HRGFSA- AGS-2 (123353 123305,123154 122998,122215 122130,122031 121743) SCR (e 1.000 d 1.000 a 0.995,e 0.994 d 0.992 a 0.888,e 1.000 d 0.885 a 0.996,e 1.000) Exon 1 123353 123305 ( 49 n); score: 1.000 Intron 1 123304 123155 ( 150 n); Pd: 1.000 Pa: 0.995 Exon 2 123154 122998 ( 157 n); score: 0.994 Intron 2 122997 122216 ( 782 n); Pd: 0.992 Pa: 0.888 Exon 3 122215 122130 ( 86 n); score: 1.000 Intron 3 122129 122032 ( 98 n); Pd: 0.885 Pa: 0.996 Exon 4 122031 121743 ( 289 n); score: 1.000 PGS (123353 123305,123154 122998,122215 122130,122031 121743) SGN-E273649+ PGS (123353 123305,123154 122998,122215 122130,122031 121793) SGN-E273574+ 3-phase translation of AGS-2 (-strand): . . . . . : . 123353 TATCATTAATAGCCCTCATGGTGAGGATGTTTACAACGGAGTACCTAAG : GATTACACGGG Y H - - P S W - G C L Q R S T - : G L H G I I N S P H G E D V Y N G V P K : D Y T G S L I A L M V R M F T T E Y L R : I T R . . . . . . 123143 GGATGATGTTACTGTTGACAACTTTCTTGCTGCTCTCCTTGGGAACAAAACTGCACTTAC G - C Y C - Q L S C C S P W E Q N C T Y D D V T V D N F L A A L L G N K T A L T G M M L L L T T F L L L S L G T K L H L . . . . . . 123083 CGGAGGCAGTGGAAAGGTTGTAGATAGTGGTCCAAATGATCATATCTTCATCTTTTATAG R R Q W K G C R - W S K - S Y L H L L - G G S G K V V D S G P N D H I F I F Y S P E A V E R L - I V V Q M I I S S S F I . . . : . . . 123023 TGATCATGGAGGTGCTGGAGTGCTTG : GAATGCCTACCAATCCTTACCTCTATGCAAATGA - S W R C W S A W : N A Y Q S L P L C K - D H G G A G V L : G M P T N P Y L Y A N D V I M E V L E C L : E C L P I L T S M Q M . . . . . . : 122181 TCTGATTGATGCTCTGAAAATGAAGCATGCTTCGGGAACATACAAAAGCTTG : GTATTTTA S D - C S E N E A C F G N I Q K L : G I L L I D A L K M K H A S G T Y K S L : V F Y I - L M L - K - S M L R E H T K A W : Y F . . . . . . 122023 CCTTGAAGCTTGTGAGTCTGGAAGTATGTTTGAGGGTCTTCTTCCTGAAGGTTTAAACAT P - S L - V W K Y V - G S S S - R F K H L E A C E S G S M F E G L L P E G L N I T L K L V S L E V C L R V F F L K V - T . . . . . . 121963 CTATGCCACAACAGCATCAAATGCTGATGAGAGCAGCTGGGGAACCTATTGCCCAGGGGA L C H N S I K C - - E Q L G N L L P R G Y A T T A S N A D E S S W G T Y C P G E S M P Q Q H Q M L M R A A G E P I A Q G . . . . . . 121903 GTACCCTAGTCCTCCTATCGAATATGACACCTGCCTGGGTGACTTGTATAGTATTTCCTG V P - S S Y R I - H L P G - L V - Y F L Y P S P P I E Y D T C L G D L Y S I S W S T L V L L S N M T P A W V T C I V F P . . . . . . 121843 GATGGAGGACAGGTACATGCGGTTTTTCTGCGTTATATAAATTCCATGTGAAAAACTGTA D G G Q V H A V F L R Y I N S M - K T V M E D R Y M R F F C V I - I P C E K L - G W R T G T C G F S A L Y K F H V K N C . . . . . 121783 GGAAATATGAGTTCACGATGAATTTTGACTATGATGTTTGT G N M S S R - I L T M M F E I - V H D E F - L - C L R K Y E F T M N F D Y D V C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-15_AGS-2_PPS_1 (123352 123305,123154 122998,122215 122130,122031 121804) (frame '2'; 516 bp, 172 residues) 1 IINSPHGEDV YNGVPKDYTG DDVTVDNFLA ALLGNKTALT GGSGKVVDSG PNDHIFIFYS 61 DHGGAGVLGM PTNPYLYAND LIDALKMKHA SGTYKSLVFY LEACESGSMF EGLLPEGLNI 121 YATTASNADE SSWGTYCPGE YPSPPIEYDT CLGDLYSISW MEDRYMRFFC VI- AGS-3 (125160 124937,123469 123305,123229 123206) SCR (e 0.980 d 0.999 a 0.994,e 1.000 d 1.000 a 0.897,e 0.958) Exon 1 125160 124937 ( 224 n); score: 0.980 Intron 1 124936 123470 (1467 n); Pd: 0.999 Pa: 0.994 Exon 2 123469 123305 ( 165 n); score: 1.000 Intron 2 123304 123230 ( 75 n); Pd: 1.000 Pa: 0.897 Exon 3 123229 123206 ( 24 n); score: 0.958 PGS (125160 124937,123469 123305,123229 123206) SGN-E249340+ PGS (125029 124937,123469 123305,123229 123209) SGN-E299017+ 3-phase translation of AGS-3 (-strand): . . . . . . 125160 TTTTTAATTGTATTATCGGAGCTCGGATAATGAATCGTTCCGTCGCCGGAGTTTTGTTCC F L I V L S E L G - - I V P S P E F C S F - L Y Y R S S D N E S F R R R S F V P F N C I I G A R I M N R S V A G V L F . . . . . . 125100 TGATTGCGCTCTCGTTAAACGTCTCCGTTTCCGAGAGCCGTAATTTTTTGAAACTTCCGT - L R S R - T S P F P R A V I F - N F R D C A L V K R L R F R E P - F F E T S V L I A L S L N V S V S E S R N F L K L P . . . . . . 125040 CTGAAGGTTCTAGATTCTTCGATGCCGATGAGATCGACTCCGTCGGTACTAGATGGGCTA L K V L D S S M P M R S T P S V L D G L - R F - I L R C R - D R L R R Y - M G Y S E G S R F F D A D E I D S V G T R W A . . . . . : . 124980 TTTTGCTTGCCGGATCAAACGGTTATTGGAATTACCGTCACCAG : GCTGATATATGTCATG F C L P D Q T V I G I T V T R : L I Y V M F A C R I K R L L E L P S P : G - Y M S C I L L A G S N G Y W N Y R H Q : A D I C H . . . . . . 123453 CATATCAACTGTTGAAGAAGGGTGGTCTCAAAGATGAGAACATTGTTGTGTTCATGTATG H I N C - R R V V S K M R T L L C S C M I S T V E E G W S Q R - E H C C V H V - A Y Q L L K K G G L K D E N I V V F M Y . . . . . . 123393 ATGACATTGCAAACAATGAAGAGAACCCAAGGCAAGGAGTTATCATTAATAGCCCTCATG M T L Q T M K R T Q G K E L S L I A L M - H C K Q - R E P K A R S Y H - - P S W D D I A N N E E N P R Q G V I I N S P H . . . : . . . 123333 GTGAGGATGTTTACAACGGAGTACCTAAG : GATTACATGGGGGATGATGTTACT V R M F T T E Y L R : I T W G M M L - G C L Q R S T - : G L H G G - C Y G E D V Y N G V P K : D Y M G D D V T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197A05.1-_PGL-15_AGS-3_PPS_1 (125158 124937,123469 123305,123229 123206) (frame '0'; 411 bp, 137 residues) 1 FNCIIGARIM NRSVAGVLFL IALSLNVSVS ESRNFLKLPS EGSRFFDADE IDSVGTRWAI 61 LLAGSNGYWN YRHQADICHA YQLLKKGGLK DENIVVFMYD DIANNEENPR QGVIINSPHG 121 EDVYNGVPKD YMGDDVT PGL 16 (- strand): 128705 128316 AGS-1 (128705 128316) SCR (e 0.787) Exon 1 128705 128316 ( 390 n); score: 0.787 PGS (128705 128316) SGN-E395471- 3-phase translation of AGS-1 (-strand): . . . . . . 128705 AATAAAGAAGATACTTAACTAAAACGTTAAAGGAAAAAATGCATAAATTAATGTTTTTTT N K E D T - L K R - R K K C I N - C F F I K K I L N - N V K G K N A - I N V F L - R R Y L T K T L K E K M H K L M F F . . . . . . 128645 AAAAAATAATTATTGATTTTAGCGATATCTTTTATTTATTATCATTTATATTAATGTTTT K K - L L I L A I S F I Y Y H L Y - C F K N N Y - F - R Y L L F I I I Y I N V L - K I I I D F S D I F Y L L S F I L M F . . . . . . 128585 ATTAAATCTGTAATATGTATTTAAAGTGAATTATATATGCAATATATATGAATTATAATT I K S V I C I - S E L Y M Q Y I - I I I L N L - Y V F K V N Y I C N I Y E L - L Y - I C N M Y L K - I I Y A I Y M N Y N . . . . . . 128525 GTTTTTGAAATATATTATGTTTGTTTGATAAAAAAATTGTCACATTGTATTATAAGTATA V F E I Y Y V C L I K K L S H C I I S I F L K Y I M F V - - K N C H I V L - V Y C F - N I L C L F D K K I V T L Y Y K Y . . . . . . 128465 TTAAAATATGTGATAAATGTATTATTTATCATTAAAATTTGTATTATATGTAAATAATAA L K Y V I N V L F I I K I C I I C K - - - N M - - M Y Y L S L K F V L Y V N N K I K I C D K C I I Y H - N L Y Y M - I I . . . . . . 128405 ATTATTCTTTAATAATATGTATTAAACTTGTATTATAAATGAATTAAAAGTGATTAAATA I I L - - Y V L N L Y Y K - I K S D - I L F F N N M Y - T C I I N E L K V I K - N Y S L I I C I K L V L - M N - K - L N . . . 128345 AAAAAATATTATTATTATTATAAATAGTAA K K Y Y Y Y Y K - - K N I I I I I N S K K I L L L L - I V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 128316 TTACTATTTATAATAATAATAATATTTTTTTATTTAATCACTTTTAATTCATTTATAATA L L F I I I I I F F Y L I T F N S F I I Y Y L - - - - Y F F I - S L L I H L - Y T I Y N N N N I F L F N H F - F I Y N . . . . . . 128376 CAAGTTTAATACATATTATTAAAGAATAATTTATTATTTACATATAATACAAATTTTAAT Q V - Y I L L K N N L L F T Y N T N F N K F N T Y Y - R I I Y Y L H I I Q I L M T S L I H I I K E - F I I Y I - Y K F - . . . . . . 128436 GATAAATAATACATTTATCACATATTTTAATATACTTATAATACAATGTGACAATTTTTT D K - Y I Y H I F - Y T Y N T M - Q F F I N N T F I T Y F N I L I I Q C D N F F - - I I H L S H I L I Y L - Y N V T I F . . . . . . 128496 TATCAAACAAACATAATATATTTCAAAAACAATTATAATTCATATATATTGCATATATAA Y Q T N I I Y F K N N Y N S Y I L H I - I K Q T - Y I S K T I I I H I Y C I Y N L S N K H N I F Q K Q L - F I Y I A Y I . . . . . . 128556 TTCACTTTAAATACATATTACAGATTTAATAAAACATTAATATAAATGATAATAAATAAA F T L N T Y Y R F N K T L I - M I I N K S L - I H I T D L I K H - Y K - - - I K I H F K Y I L Q I - - N I N I N D N K - . . . . . . 128616 AGATATCGCTAAAATCAATAATTATTTTTTAAAAAAACATTAATTTATGCATTTTTTCCT R Y R - N Q - L F F K K T L I Y A F F P D I A K I N N Y F L K K H - F M H F F L K I S L K S I I I F - K N I N L C I F S . . . 128676 TTAACGTTTTAGTTAAGTATCTTCTTTATT L T F - L S I F F I - R F S - V S S L F N V L V K Y L L Y Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (+ strand): 133812 133919 AGS-1 (133812 133919) SCR (e 0.825) Exon 1 133812 133919 ( 108 n); score: 0.825 PGS (133812 133919) SGN-E392579+ PGS (133812 133919) SGN-E397911+ PGS (133812 133919) SGN-E392202- PGS (133812 133919) SGN-E392422- PGS (133814 133919) SGN-E392578- PGS (133814 133919) SGN-E392587- 3-phase translation of AGS-1 (+strand): . . . . . . 133812 ATTTAATGTTGATTAATGATCCGTTACCGTAAATTAAGCTATTTTAGTTAACAAGTTTAA I - C - L M I R Y R K L S Y F S - Q V - F N V D - - S V T V N - A I L V N K F K L M L I N D P L P - I K L F - L T S L . . . . . 133872 ATGTACTGTTTTCCCCCCATTTTTTTCTTAACAGTTTAAATTTACCAT M Y C F P P I F F L T V - I Y H C T V F P P F F S - Q F K F T N V L F S P H F F L N S L N L P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 133919 ATGGTAAATTTAAACTGTTAAGAAAAAAATGGGGGGAAAACAGTACATTTAAACTTGTTA M V N L N C - E K N G G K T V H L N L L W - I - T V K K K M G G K Q Y I - T C - G K F K L L R K K W G E N S T F K L V . . . . . 133859 ACTAAAATAGCTTAATTTACGGTAACGGATCATTAATCAACATTAAAT T K I A - F T V T D H - S T L N L K - L N L R - R I I N Q H - N - N S L I Y G N G S L I N I K Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 23:57:40 2006