GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 12:03:14 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-EganF/C08HBa0235H18/C08HBa0235H18.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0235H18.1, from 1 to 108061, both strands analyzed. ... started at: Tue Jul 25 12:11:15 2006 EST library file: /tmp/cxgn-bacpublish-resources-MOGwA3/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 33 EST library file: /tmp/cxgn-bacpublish-resources-MOGwA3/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 52 ******************************************************************************** EST sequence 74 +strand 817 n (File: SGN-U319906+) 1 AAAAGAAAAC GATCTCTGTC CGAAAATTCG TGCGAGAATC TGTTTTTTTT TCCTGGGAAT 61 CTGCTAAGAG TTTGATTGAA AATGGTACGA GGAAAACTTG TAGTTCAACT TGTTGGAGCT 121 AAAGGCCTTG AAAACACTGA TTTTCTCAAT GATATGGATC CATATGTGAT CTTAACTTAT 181 AGATCTCAGG AGAAAAAGAG TACTGTTGCA TCAGGGAAGG GATGTGAACC AGAATGGAAT 241 GAAACATTTG TTTTCTCCAT TTCTGAGGAT GCTGAAGAAC TCTTCTTGAA GATAATGGAC 301 AGTGATTCTA TCGGCGAGGA CGATATTGTT GGGGAAGCTA AGATACCAAT TGAACCAGTT 361 TTTTCAGAAG GGAGCATCCC AATAACATGT TATAATGTTG TTAAAGATGA GGAATATTGT 421 GGAGAAATTA AAGTTGGTCT CACCTTTACT CCTGAGGAAT ATTCTGAGAG GGAGTATGAA 481 GAAGAGAACC TTGGTGGATG GAAAGAGTCT TCTTATTGAT GTGAAGCATT ACTCGACTGA 541 TCAATTTGTT CTTGCTTAAA TTATGAACTT ATCTTACCCG TTATAACATT TTCAAGTGTT 601 AAAAGTGTGG ATTTCATATA GTAAAAAAGA AAAGAGCTAT TTTGAGTCTA TACGGGTTAC 661 TGTAATAAAA ATGTTGGGAT TTTCTTTTCA TTTTTCAAGT TAAATTATTT TATCATATGC 721 TACAATGTAA GGTTTGTTAT TATGCAGAAC AACAATGTCA AGTTATGAGA TAATCAAGTC 781 AAATATCTAG AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 3714 to 1): Exon 1 3114 2967 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 2966 2475 ( 492 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2474 2409 ( 66 n); cDNA 149 214 ( 66 n); score: 1.000 Intron 2 2408 2291 ( 118 n); Pd: 0.991 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 2290 2164 ( 127 n); cDNA 215 341 ( 127 n); score: 1.000 Intron 3 2163 1009 (1155 n); Pd: 0.998 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 1008 894 ( 115 n); cDNA 342 456 ( 115 n); score: 1.000 Intron 4 893 726 ( 168 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 725 389 ( 337 n); cDNA 457 793 ( 337 n); score: 1.000 PPA cDNA 794 817 MATCH C08HBa0235H18.1- SGN-U319906+ 1.000 793 0.971 C PGS_C08HBa0235H18.1-_SGN-U319906+ (3114 2967,2474 2409,2290 2164,1008 894,725 389) Alignment (genomic DNA sequence = upper lines): AAAAGAAAAC GATCTCTGTC CGAAAATTCG TGCGAGAATC TGTTTTTTTT TCCTGGGAAT 3055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAAAC GATCTCTGTC CGAAAATTCG TGCGAGAATC TGTTTTTTTT TCCTGGGAAT 60 CTGCTAAGAG TTTGATTGAA AATGGTACGA GGAAAACTTG TAGTTCAACT TGTTGGAGCT 2995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTAAGAG TTTGATTGAA AATGGTACGA GGAAAACTTG TAGTTCAACT TGTTGGAGCT 120 AAAGGCCTTG AAAACACTGA TTTTCTCAGT AAGTTTTTTG TTTTTTTTTC TAATTTATTT 2935 |||||||||| |||||||||| |||||||| AAAGGCCTTG AAAACACTGA TTTTCTCA.. .......... .......... .......... 148 GTTTTGATCT GATCAGATTA ATGTATAGAT CTCTTTTTTC TTTCGATTAC ATTTGATGTT 2875 .......... .......... .......... .......... .......... .......... 148 TTCTTAATCA ACCTAATTTT CGATTGTTAC TTATGTGAAT TAGAGGTTGA TCTACATGTA 2815 .......... .......... .......... .......... .......... .......... 148 ATTTATGTGT TCACACAACA CCTGTTTGAA TGTGCGTTTT ATTTAGGAAA ATAGAGAATT 2755 .......... .......... .......... .......... .......... .......... 148 ATTTGAAGAT CGGATCAAAT TTTCATGATC AAACAGATAT TTGTCAAAAT TCATGGCCAA 2695 .......... .......... .......... .......... .......... .......... 148 ACCTTATCAA TGTATATTAA TTTGACTTCG TGGTAAACTT TAAATTTTGA ATCAAAGTAT 2635 .......... .......... .......... .......... .......... .......... 148 GTGAAGTTGA CATTTAGGTC TATGCCTAGT CAAACGATGT CAAATAAAAT AGAATCGAGG 2575 .......... .......... .......... .......... .......... .......... 148 AATATGAATC AAAAATCGAT AATCATCTTG GCTAATTTGA TTGATACTCT GTATTTTATT 2515 .......... .......... .......... .......... .......... .......... 148 TTATTTTTTA ATTTAAAAAA TGTTATTTTG TGTGATACAG ATGATATGGA TCCATATGTG 2455 |||||||||| |||||||||| .......... .......... .......... .......... ATGATATGGA TCCATATGTG 168 ATCTTAACTT ATAGATCTCA GGAGAAAAAG AGTACTGTTG CATCAGGTAC ATTTGTTAAT 2395 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATCTTAACTT ATAGATCTCA GGAGAAAAAG AGTACTGTTG CATCAG.... .......... 214 AATCTTTGGT TAATTATTAC TTAGTTATTA GTTACCTATG TTTTTTTTAA GAAAAATGAA 2335 .......... .......... .......... .......... .......... .......... 214 ATGAAGTTTG ATCAATCGAT ATTTATAATG TTAAATTTTC ATAGGGAAGG GATGTGAACC 2275 |||||| |||||||||| .......... .......... .......... .......... ....GGAAGG GATGTGAACC 230 AGAATGGAAT GAAACATTTG TTTTCTCCAT TTCTGAGGAT GCTGAAGAAC TCTTCTTGAA 2215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGGAAT GAAACATTTG TTTTCTCCAT TTCTGAGGAT GCTGAAGAAC TCTTCTTGAA 290 GATAATGGAC AGTGATTCTA TCGGCGAGGA CGATATTGTT GGGGAAGCTA AGTAAGTATA 2155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GATAATGGAC AGTGATTCTA TCGGCGAGGA CGATATTGTT GGGGAAGCTA A......... 341 TCTAATTAGA GGCGAATCTA AGATTATACG TATTTTCTCT ATATTAACAT AGTTTGAGTT 2095 .......... .......... .......... .......... .......... .......... 341 TGATAGTACA TGCATCCATG ACTTGTATAT GTTGAGATAA ATAGACGTAT ATGACTTTAG 2035 .......... .......... .......... .......... .......... .......... 341 ATAAGAAGAC GTGGAGGTCG AAAATTAGGG TAGAAGGTTA GTAGTTAGTG AGCCTGAGTG 1975 .......... .......... .......... .......... .......... .......... 341 TTGTTGCACT TGTTATTGGA GAGGAAGAGG GCTAGCCTAG TCTCTACTTC TCCTTTTTAG 1915 .......... .......... .......... .......... .......... .......... 341 TAGTAGTATT TTGTATATCG CGTAGTTTCC TTTCTTTAAT GATTATTACA ATCAGTTGCT 1855 .......... .......... .......... .......... .......... .......... 341 TCATTTGATT TGTATCTTGC TATTTTGTCG TTTTATTTAC TTGCACCATG CTTTTTCTTT 1795 .......... .......... .......... .......... .......... .......... 341 TCTTTTCTTT TGAGTTCAGG GTCCTTCGTG AACAACCTGC AAAGGTAGGG GTATGTTCAG 1735 .......... .......... .......... .......... .......... .......... 341 CGTACATCGA TATCCTACCT TCCCAATATC CAACTTGTGA AATTACACTG AATATATAGT 1675 .......... .......... .......... .......... .......... .......... 341 TATTTTTGTG GTTGTTGTAG TATACATCTA CTTTCTAGTG GTGTTATACA AACCATGGTT 1615 .......... .......... .......... .......... .......... .......... 341 TAAACGGTTG AGATTATTAG TTCATGGAGT CGAATAAGCA TTTGCCTAAA ACAGTTGAGA 1555 .......... .......... .......... .......... .......... .......... 341 TTATTAGTTC ATGGAGTCGA ATAAGCATTT CCCTAAAACA GTTGAGATTA TTAGTTCATG 1495 .......... .......... .......... .......... .......... .......... 341 GAGTCGAATA AGCATTTGCC TAAAACAGTT GAGATTATTA GTTCATGGAG TCGAATAAGC 1435 .......... .......... .......... .......... .......... .......... 341 ATTTGCCTAA AACAGTTGAG ATTATTAGTT CATGGAGTCG AATAAGCATT TGCCTAAAAC 1375 .......... .......... .......... .......... .......... .......... 341 AGTTGAGATT ATTAGTTCAT GGAGTCGAAT AAGCATTTGC CTAAAACAGT TGAGATTATT 1315 .......... .......... .......... .......... .......... .......... 341 AGTTCATGGA GTCGAATAAG CATTTGCCTA AAACAGTTGA GATTATTAGT TCATGGAGTC 1255 .......... .......... .......... .......... .......... .......... 341 GAATAAGCAT TTGCCTAAAA CAGTTGAGAT TATTAGTTCA TGGAGTCGAA TAAGCATTTG 1195 .......... .......... .......... .......... .......... .......... 341 CCTAAAACAG TTGAGATTAT TAGTTCATGG AGTCGAATAA GCATTTACCT ATCAGAGACG 1135 .......... .......... .......... .......... .......... .......... 341 AATCTAAGAT TTATACAATT TCTGTATATA CAATTTCTGT ATATATATAT ATATATATAT 1075 .......... .......... .......... .......... .......... .......... 341 ATGCAAACAT AATCTGAGTT TGCTAGTATT GGTTTTGAGA TATGTTCAAT AATATGTTAC 1015 .......... .......... .......... .......... .......... .......... 341 TTGCAGGATA CCAATTGAAC CAGTTTTTTC AGAAGGGAGC ATCCCAATAA CATGTTATAA 955 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GATA CCAATTGAAC CAGTTTTTTC AGAAGGGAGC ATCCCAATAA CATGTTATAA 395 TGTTGTTAAA GATGAGGAAT ATTGTGGAGA AATTAAAGTT GGTCTCACCT TTACTCCTGA 895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTTAAA GATGAGGAAT ATTGTGGAGA AATTAAAGTT GGTCTCACCT TTACTCCTGA 455 GGCAAGTTAC TTTCTAAAAT TTTATTGATT TATAAAAAAA AAAAAAAAAA AGGTTATGCC 835 | G......... .......... .......... .......... .......... .......... 456 TCAATCCCGA GCTAACAAGT TCAGATTGGC TATATGAATA AAGGAACTCG TAACATGCAA 775 .......... .......... .......... .......... .......... .......... 456 GTATAATAGG TATTCTATGT GCATGATATA TTTTGCTATG TTTTTGTAGG AATATTCTGA 715 | |||||||||| .......... .......... .......... .......... .........G AATATTCTGA 467 GAGGGAGTAT GAAGAAGAGA ACCTTGGTGG ATGGAAAGAG TCTTCTTATT GATGTGAAGC 655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAGTAT GAAGAAGAGA ACCTTGGTGG ATGGAAAGAG TCTTCTTATT GATGTGAAGC 527 ATTACTCGAC TGATCAATTT GTTCTTGCTT AAATTATGAA CTTATCTTAC CCGTTATAAC 595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACTCGAC TGATCAATTT GTTCTTGCTT AAATTATGAA CTTATCTTAC CCGTTATAAC 587 ATTTTCAAGT GTTAAAAGTG TGGATTTCAT ATAGTAAAAA AGAAAAGAGC TATTTTGAGT 535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCAAGT GTTAAAAGTG TGGATTTCAT ATAGTAAAAA AGAAAAGAGC TATTTTGAGT 647 CTATACGGGT TACTGTAATA AAAATGTTGG GATTTTCTTT TCATTTTTCA AGTTAAATTA 475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATACGGGT TACTGTAATA AAAATGTTGG GATTTTCTTT TCATTTTTCA AGTTAAATTA 707 TTTTATCATA TGCTACAATG TAAGGTTTGT TATTATGCAG AACAACAATG TCAAGTTATG 415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATCATA TGCTACAATG TAAGGTTTGT TATTATGCAG AACAACAATG TCAAGTTATG 767 AGATAATCAA GTCAAATATC TAGAAA 389 |||||||||| |||||||||| |||||| AGATAATCAA GTCAAATATC TAGAAA 793 hqPGS_C08HBa0235H18.1-_SGN-U319906+ (3114 2967,2474 2409,2290 2164,1008 894,725 389) ******************************************************************************** EST sequence 68 -strand 861 n (File: SGN-U345822-) 1 GATCGAACTA GAAATCTATT TCTTTGGATT TGNNGGTAGT CTTGAATCTA GAAAGAATAC 61 AGAAATAGGC TAGAAATCAC TTCGAATGAA GAAATGAGAA TATGTTTTCC TGATATCTCA 121 ATGGTCAAAT TAAAAATCAA GTGTATCCTT TCGATGAATG ATCGAAAGAA CCACTTTAGT 181 AAATGATATT ATTCAGATTT GAGACGAAAG AACTCCTTTG CTATCAAAAT ATCCAATATT 241 TCGAAAAAAT TTCATTGATT ACCCATAGTC AGGAATAGAA TAATTGAGGG AAAGATATTA 301 GGATGATAAA AAAAAAATGA CTAGCAAAGG ATAAATTGGC TAGTTCTCAG TATTTAATTA 361 AGAAATCCAA TTGTTGGTCA TTAAAGAATA CAAAAGAAAG AATTTCAAAT TTACAAGATA 421 CGATCTATCT GGATCTAAAG TGTCAATTCC AACAAATATT GAACTAAAAA AAATTCTTGC 481 TTTCGAAATG GTTTGCCGTC TGAGATGAAT CTATTATTTC GATTTGTTAT TTGTTATTGA 541 ATTGCGTGCA CATAAAGACC ATAAAAAGAG TTTCGTTTTA TGGTTCTTTC ATATACGTTT 601 TCTTTAATTG AATGAACGTT CTGATTCTCA ATTTATCAAA ATACTTCAAT TGGTACACGC 661 AAGAAATAGG CTAATTCAGC AGCCTTTTGT TCAATTTCTC GTGGAGTCAA ATTCTCATCA 721 GTACGGGTCA AGGGAATGGA CCCCTGGCCT CGGATGTCCA TATAAAGAAC ACGACGAGCA 781 TAAATCCTCG TGCCGAATTC CTGCAGCCCG GGGGATCCAC TAGTTCTAGA GCGGCCGCCA 841 CCGCGGGGAG CTCCAGCTAT T Predicted gene structure (within gDNA segment 1 to 5176): Exon 1 220 232 ( 13 n); cDNA 538 548 ( 11 n); score: 0.769 Intron 1 233 898 ( 666 n); Pd: 0.573 (s: 0), Pa: 0.710 (s: 0) Exon 2 899 906 ( 8 n); cDNA 549 557 ( 9 n); score: 0.438 Intron 2 907 950 ( 44 n); Pd: 0.976 (s: 0), Pa: 0.000 (s: 0.52) Exon 3 951 1003 ( 53 n); cDNA 558 610 ( 53 n); score: 0.547 Intron 3 1004 2298 (1295 n); Pd: 0.900 (s: 0.54), Pa: 0.000 (s: 0.60) Exon 4 2299 2359 ( 61 n); cDNA 611 669 ( 59 n); score: 0.607 Intron 4 2360 3610 (1251 n); Pd: 0.664 (s: 0.60), Pa: 0.326 (s: 0.96) Exon 5 3611 3724 ( 114 n); cDNA 670 783 ( 114 n); score: 0.947 MATCH C08HBa0235H18.1+ SGN-U345822- 0.763 249 0.289 C PGS_C08HBa0235H18.1+_SGN-U345822- (220 232,899 906,951 1003,2299 2359,3611 3724) Alignment (genomic DNA sequence = upper lines): TGAAATAGTC GTGGCGAGTT GGATCGAACA CCATCATATG TTTTGAAAAT GAGAAGAAAT 279 |||| | | | ||| TGAATT-G-C GTG....... .......... .......... .......... .......... 548 AAAGAGCGTT AAGGACAAAG TTAGAGTGAT TTCTTCACAT CATATGTTTT GAAAATGAGA 339 .......... .......... .......... .......... .......... .......... 548 AGAAATAAAG AGCGTTAAGG ACAAAGTTAG AGTGATTTCT TCACAATAAT TTCTAGATAT 399 .......... .......... .......... .......... .......... .......... 548 TTGACTTGAT TATCTCATAA CTTGACATTG TTGTTCTGCA TAATAACAAA CCTTACATTG 459 .......... .......... .......... .......... .......... .......... 548 TAGCATATGA TAAAATAATT TAACTTGAAA AATGAAAAGA AAATCCCAAC ATTTTTATTA 519 .......... .......... .......... .......... .......... .......... 548 CAGTAACCCG TATAGACTCA AAATAGCTCT TTTCTTTTTT ACTATATGAA ATCCACACTT 579 .......... .......... .......... .......... .......... .......... 548 TTAACACTTG AAAATGTTAT AACGGGTAAG ATAAGTTCAT AATTTAAGCA AGAACAAATT 639 .......... .......... .......... .......... .......... .......... 548 GATCAGTCGA GTAATGCTTC ACATCAATAA GAAGACTCTT TCCATCCACC AAGGTTCTCT 699 .......... .......... .......... .......... .......... .......... 548 TCTTCATACT CCCTCTCAGA ATATTCCTAC AAAAACATAG CAAAATATAT CATGCACATA 759 .......... .......... .......... .......... .......... .......... 548 GAATACCTAT TATACTTGCA TGTTACGAGT TCCTTTATTC ATATAGCCAA TCTGAACTTG 819 .......... .......... .......... .......... .......... .......... 548 TTAGCTCGGG ATTGAGGCAT AACCTTTTTT TTTTTTTTTT TTATAAATCA ATAAAATTTT 879 .......... .......... .......... .......... .......... .......... 548 AGAAAGTAAC TTGCCTCAGG A-GTAAAGGT GAGACCAACT TTAATTTCTC CACAATATTC 938 | ||||| .......... .........C ACATAAAG.. .......... .......... .......... 557 CTCATCTTTA ACAACATTAT AACATGTTAT TGGGATGCTC CCTTCTGAAA AAACTGGTTC 998 | ||| | || | || | ||| | | ||| | | | || .......... ..ACCATAAA AAGAGTTTCG TTTTATGGTT CTTTCATATA CGTTTTCTTT 605 AATTGGTATC CTGCAAGTAA CATATTATTG AACATATCTC AAAACCAATA CTAGCAAACT 1058 ||||| AATTG..... .......... .......... .......... .......... .......... 610 CAGATTATGT TTGCATATAT ATATATATAT ATATATACAG AAATTGTATA TACAGAAATT 1118 .......... .......... .......... .......... .......... .......... 610 GTATAAATCT TAGATTCGTC TCTGATAGGT AAATGCTTAT TCGACTCCAT GAACTAATAA 1178 .......... .......... .......... .......... .......... .......... 610 TCTCAACTGT TTTAGGCAAA TGCTTATTCG ACTCCATGAA CTAATAATCT CAACTGTTTT 1238 .......... .......... .......... .......... .......... .......... 610 AGGCAAATGC TTATTCGACT CCATGAACTA ATAATCTCAA CTGTTTTAGG CAAATGCTTA 1298 .......... .......... .......... .......... .......... .......... 610 TTCGACTCCA TGAACTAATA ATCTCAACTG TTTTAGGCAA ATGCTTATTC GACTCCATGA 1358 .......... .......... .......... .......... .......... .......... 610 ACTAATAATC TCAACTGTTT TAGGCAAATG CTTATTCGAC TCCATGAACT AATAATCTCA 1418 .......... .......... .......... .......... .......... .......... 610 ACTGTTTTAG GCAAATGCTT ATTCGACTCC ATGAACTAAT AATCTCAACT GTTTTAGGCA 1478 .......... .......... .......... .......... .......... .......... 610 AATGCTTATT CGACTCCATG AACTAATAAT CTCAACTGTT TTAGGGAAAT GCTTATTCGA 1538 .......... .......... .......... .......... .......... .......... 610 CTCCATGAAC TAATAATCTC AACTGTTTTA GGCAAATGCT TATTCGACTC CATGAACTAA 1598 .......... .......... .......... .......... .......... .......... 610 TAATCTCAAC CGTTTAAACC ATGGTTTGTA TAACACCACT AGAAAGTAGA TGTATACTAC 1658 .......... .......... .......... .......... .......... .......... 610 AACAACCACA AAAATAACTA TATATTCAGT GTAATTTCAC AAGTTGGATA TTGGGAAGGT 1718 .......... .......... .......... .......... .......... .......... 610 AGGATATCGA TGTACGCTGA ACATACCCCT ACCTTTGCAG GTTGTTCACG AAGGACCCTG 1778 .......... .......... .......... .......... .......... .......... 610 AACTCAAAAG AAAAGAAAAG AAAAAGCATG GTGCAAGTAA ATAAAACGAC AAAATAGCAA 1838 .......... .......... .......... .......... .......... .......... 610 GATACAAATC AAATGAAGCA ACTGATTGTA ATAATCATTA AAGAAAGGAA ACTACGCGAT 1898 .......... .......... .......... .......... .......... .......... 610 ATACAAAATA CTACTACTAA AAAGGAGAAG TAGAGACTAG GCTAGCCCTC TTCCTCTCCA 1958 .......... .......... .......... .......... .......... .......... 610 ATAACAAGTG CAACAACACT CAGGCTCACT AACTACTAAC CTTCTACCCT AATTTTCGAC 2018 .......... .......... .......... .......... .......... .......... 610 CTCCACGTCT TCTTATCTAA AGTCATATAC GTCTATTTAT CTCAACATAT ACAAGTCATG 2078 .......... .......... .......... .......... .......... .......... 610 GATGCATGTA CTATCAAACT CAAACTATGT TAATATAGAG AAAATACGTA TAATCTTAGA 2138 .......... .......... .......... .......... .......... .......... 610 TTCGCCTCTA ATTAGATATA CTTACTTAGC TTCCCCAACA ATATCGTCCT CGCCGATAGA 2198 .......... .......... .......... .......... .......... .......... 610 ATCACTGTCC ATTATCTTCA AGAAGAGTTC TTCAGCATCC TCAGAAATGG AGAAAACAAA 2258 .......... .......... .......... .......... .......... .......... 610 TGTTTCATTC CATTCTGGTT CACATCCCTT CCCTATGAAA ATTTAACATT ATAAATATCG 2318 | | ||| || | | | || .......... .......... .......... .......... AATGAACGTT CTGATTCTCA 630 ATTGATCAAA CTTCATTTCA TTTTTCTTAA AAAAAACATA GGTAACTAAT AACTAAGTAA 2378 ||| |||||| | | || | || | | || | ||| | ATTTATCAAA ATAC-TTCAA TTGGT-ACAC GCAAGAAATA G......... .......... 669 TAATTAACCA AAGATTATTA ACAAATGTAC CTGATGCAAC AGTACTCTTT TTCTCCTGAG 2438 .......... .......... .......... .......... .......... .......... 669 ATCTATAAGT TAAGATCACA TATGGATCCA TATCATCTGT ATCACACAAA ATAACATTTT 2498 .......... .......... .......... .......... .......... .......... 669 TTAAATTAAA AAATAAAATA AAATACAGAG TATCAATCAA ATTAGCCAAG ATGATTATCG 2558 .......... .......... .......... .......... .......... .......... 669 ATTTTTGATT CATATTCCTC GATTCTATTT TATTTGACAT CGTTTGACTA GGCATAGACC 2618 .......... .......... .......... .......... .......... .......... 669 TAAATGTCAA CTTCACATAC TTTGATTCAA AATTTAAAGT TTACCACGAA GTCAAATTAA 2678 .......... .......... .......... .......... .......... .......... 669 TATACATTGA TAAGGTTTGG CCATGAATTT TGACAAATAT CTGTTTGATC ATGAAAATTT 2738 .......... .......... .......... .......... .......... .......... 669 GATCCGATCT TCAAATAATT CTCTATTTTC CTAAATAAAA CGCACATTCA AACAGGTGTT 2798 .......... .......... .......... .......... .......... .......... 669 GTGTGAACAC ATAAATTACA TGTAGATCAA CCTCTAATTC ACATAAGTAA CAATCGAAAA 2858 .......... .......... .......... .......... .......... .......... 669 TTAGGTTGAT TAAGAAAACA TCAAATGTAA TCGAAAGAAA AAAGAGATCT ATACATTAAT 2918 .......... .......... .......... .......... .......... .......... 669 CTGATCAGAT CAAAACAAAT AAATTAGAAA AAAAAACAAA AAACTTACTG AGAAAATCAG 2978 .......... .......... .......... .......... .......... .......... 669 TGTTTTCAAG GCCTTTAGCT CCAACAAGTT GAACTACAAG TTTTCCTCGT ACCATTTTCA 3038 .......... .......... .......... .......... .......... .......... 669 ATCAAACTCT TAGCAGATTC CCAGGAAAAA AAAACAGATT CTCGCACGAA TTTTCGGACA 3098 .......... .......... .......... .......... .......... .......... 669 GAGATCGTTT TCTTTTTTTT TTTTTTTGTT TCGATGAAGA ATATGTTGAG CTGATGTGTA 3158 .......... .......... .......... .......... .......... .......... 669 TTTATATGTG AACAAAAGAC CGGTTTAAAG TGGGGTTAGA CCGGTGAGTG TAAAGTGAAC 3218 .......... .......... .......... .......... .......... .......... 669 CGGACGGTTT AGGCGAAAAT CACATTTTAG ACCAAAAAAG GCAAAAAAGA AAATCACATT 3278 .......... .......... .......... .......... .......... .......... 669 TTACGCACCT AAATTATTTC GAGTATGAAA AACATATTTA AACTAATAAT AATAAGTTTG 3338 .......... .......... .......... .......... .......... .......... 669 AGAAATATAC TTCAAGTAAT ATGTGATGTC GTGTGTATTA CGTGTATACA CACATTTGAT 3398 .......... .......... .......... .......... .......... .......... 669 TATGTTAGAT TGCGTTGGCG AAAAAAAAGC CACGTGGATT ATTTTTTTTT TTGGATCAAA 3458 .......... .......... .......... .......... .......... .......... 669 TGCGTCGGAG TGTGCATTTG GTCTGGTTAG AATTGAATTG TGTTTTTTTT TCTTCAAATT 3518 .......... .......... .......... .......... .......... .......... 669 AATGAGTGGT AATATTGTAG AAATGAATCA ATAGAATCTT CTTCATTTTA AGATTTTAGG 3578 .......... .......... .......... .......... .......... .......... 669 TTTCAATTAT TCGTTTTTGT GACTGAAAAA AGGCTAATTC AGCAGCTTTT TGTTCAATTT 3638 |||||||| |||||| ||| |||||||||| .......... .......... .......... ..GCTAATTC AGCAGCCTTT TGTTCAATTT 697 CTCGTGCAGT CAAATTCTCA TCAGTACAGG TCAAGAGAAT GGACCCCTGG CCTCGGATGT 3698 |||||| ||| |||||||||| ||||||| || ||||| |||| |||||||||| |||||||||| CTCGTGGAGT CAAATTCTCA TCAGTACGGG TCAAGGGAAT GGACCCCTGG CCTCGGATGT 757 CCATATAAAG AACACGACAA ACATAA 3724 |||||||||| |||||||| | ||||| CCATATAAAG AACACGACGA GCATAA 783 hqPGS_C08HBa0235H18.1+_SGN-U345822- (3611 3724) ******************************************************************************** EST sequence 3 -strand 922 n (File: SGN-U312653-) 1 AAACAACATT TTTTTTTTTG TGATGATGTG ACTTTTATTC ATGTAATTAT ATTAGGTTTA 61 TTACAAGCCA ATTATATAAC TCGACTACTT CAAGCAATTT AAAAGAAAGT GACTCAATTT 121 TACTTAGCCT CTTCATCACT TGAGGGCATC TCCAAGGGGA AATTTGGGCT AGTAACACCA 181 TTAGGACAAA AAACAACCCT ATAATTTGTA CTACCACTAG GGCAAGTAAA TGTGCTAGTA 241 GGATCATCTT GTGGGTAGCT ATACGCATCA GGACATCTTT GTTTGAAAAA TCTCGACAAA 301 TCAGTAGGGC CACATGGACC TTGTGTGCAA CAATATTGTT GTCCTCCGAA CGTGGTACAA 361 GGATTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGAC ATTCACCATT TATATTAGCC 421 GTACAATGAA TTGCATGGCA TTTCCCTCCA CTAGGATTGG TCGGGGCGAA AGTCATTGGA 481 ATATTAAATC CATCGACTAA AGAAATGTCC CAGAAATCTA GGTTGCTAAA CTGGTCCAAG 541 GCGTACTCGG CCAGGGTGTT TGGTGGTTTG CCCCACCCGG TACATTGCAA GACCCCACCA 601 CAATCACCAG TCTGACATGA ACCTCTACCA GCACCATCAA AGTTGCAATT CGTACGACCC 661 CATATACGTG CCATCTTAGT GCCCCTCGGT GCATTGATGA CCCATGTTTG GCCTCGATCA 721 AGACGTCGAC CACCGCCTAT TGGGGTCGAC GCCGCCCAGA CGGTGTATGG ACAGTTGTTG 781 CGTACCTCGA AAGTGGCAGC ATAAGTGTAA GTCACAAAAG CAAGAAGGAA GAAAACAAAA 841 GAAGATCTCA AGTAGGCCAT GTTTGTGGAA CTATTTTTTT AAATGTAAGT TGTTCAATTC 901 GGCCGATTGG CCGCCAATCG CC Predicted gene structure (within gDNA segment 9650 to 1): Exon 1 8541 8503 ( 39 n); cDNA 138 176 ( 39 n); score: 0.718 Intron 1 8502 5350 (3153 n); Pd: 0.156 (s: 0), Pa: 0.189 (s: 0.72) Exon 2 5349 4671 ( 679 n); cDNA 177 851 ( 675 n); score: 0.813 PPA cDNA 21 9 MATCH C08HBa0235H18.1- SGN-U312653- 0.813 718 0.779 C PGS_C08HBa0235H18.1-_SGN-U312653- (8541 8503,5349 4671) Alignment (genomic DNA sequence = upper lines): ACTTGTAGGC ATCTCCAATG GGAAATTTGT TGTTTCATTG TGAGTAGAGC CATAAGGACA 8482 ||||| ||| |||||||| | ||||||||| | | ACTTGAGGGC ATCTCCAAGG GGAAATTTGG GCTAGTAAC. .......... .......... 176 GAACATTATC TTGTAGTCTG TAGTCCAACT CTGACAAGTA AAAGTACTAG TTGGATCGTC 8422 .......... .......... .......... .......... .......... .......... 176 TTGAGGGTAA CTATAGGCAT CAGGACATCT TTGTTTGAAA AATCTTGACA ATTCAGTAGG 8362 .......... .......... .......... .......... .......... .......... 176 ACCACATGGA CCGTGATTAC AACAATATTG TTGTCCTCCG AATGTTGTAC AAGGGTTGTT 8302 .......... .......... .......... .......... .......... .......... 176 ACATCCTCCA GGTACCCTAA GTGAACCAGG GCATTCACCG TTTATATTGG CTGTGCATTG 8242 .......... .......... .......... .......... .......... .......... 176 AATTGGATGA CATTTTCCAG GGCCAGGCTT AGTTGGGCCA AAAGACATAG GGATGTTGAA 8182 .......... .......... .......... .......... .......... .......... 176 TCCATCAATA ACAGAAATAT CCCAAAAATC TAGGTTACCA AACTGGTTCA AAGCGTATTC 8122 .......... .......... .......... .......... .......... .......... 176 AGCTAAGGTG TTTGGTGGTT TACCCCATCC TTTGCAATCC AGGACTCCAC CACAATCACC 8062 .......... .......... .......... .......... .......... .......... 176 AGTCTGGCAC CAACCTCTTC CAGCACCATC AAAGTTGCAA TTAGTACGAC CCCAAATACG 8002 .......... .......... .......... .......... .......... .......... 176 TGCCATTTTA GTGCCAGGTG GGGCCCAAAA CCACCAACTC TGACCTCTCT CGAGACGTCG 7942 .......... .......... .......... .......... .......... .......... 176 ACCACCTCCT ACGGGGACCG CTGCCGCCCA AACGGTGTAG GGGCAGTTGT TATGGACCTC 7882 .......... .......... .......... .......... .......... .......... 176 AAATACACCG GAACCATAAG TGTAAGTCAC AAAGGCAAGG AGAAAAAACA CTAAACAAGT 7822 .......... .......... .......... .......... .......... .......... 176 TGTCAAGTGA CTCATTTTAG TATAAGAAGT TGTAGGATAT ATTTGCATAT CGAGCTAGGG 7762 .......... .......... .......... .......... .......... .......... 176 GTTTATATAG TGGTATGGCG GCTTTTTTTC ACTATGGACA TTAATCATAT AAATATTGGC 7702 .......... .......... .......... .......... .......... .......... 176 ACTTGTTATA AACATATATA GAAAATTAAA AAAAAAAATT GTATCCAAAA TATCTCCACT 7642 .......... .......... .......... .......... .......... .......... 176 TGAAAAAAAA AGCCGCCAAT ATAATATGAG TACAGCCTAT TATAAGTAAT ATATTTTGTT 7582 .......... .......... .......... .......... .......... .......... 176 CACTCCAGTC ATATTTCACA GTTCAACTTT TTGCTATTTT GAAAATTTAT GCATTAACAC 7522 .......... .......... .......... .......... .......... .......... 176 ATTATGATAT TTATAATGAT TAAAAAAAAA AGAGAAGATA TTTTTTAATT AAGTGATATA 7462 .......... .......... .......... .......... .......... .......... 176 TACGTATTAT TAGTTTTGTG TTTAACTATA TATTAATTTT AAATTATTTA GTTTAGTATA 7402 .......... .......... .......... .......... .......... .......... 176 TACAACAAAT CGGAAAAATG CATGGCAGGG CATGAAACCT AAAATTGTGG AAAATTTCCT 7342 .......... .......... .......... .......... .......... .......... 176 AATTTTTTTT GAACATTTTT TCATGAGAAA TTTAGTTAGT AGAGAATTCT CTTCATAATT 7282 .......... .......... .......... .......... .......... .......... 176 TTTATTGGTT ATGTTTTCAT AAATAAAATA ACTTAAAAAT TTTGAATTAC AAATTTGTAA 7222 .......... .......... .......... .......... .......... .......... 176 TTTTTGTTTA CAGACAATTG CCTTTTTTCC CTTGATTATT TTTTTCCGTC GTATATATAT 7162 .......... .......... .......... .......... .......... .......... 176 AGTGGATTTT TATATTAAAT TATTTATAGC ATATTTATCA AGTGGACATA ATAATTAATT 7102 .......... .......... .......... .......... .......... .......... 176 GAAAATGTGC ATGCATTCTA CAGTCAAAAA AGTTGAGCAA ATGGGTAGGC GTAGAGATGA 7042 .......... .......... .......... .......... .......... .......... 176 GTGGAACCTT AAAAGTTTGA ATTTTTTTTT TATTCGATAC AAGCTATGTA GGTCTTGTTT 6982 .......... .......... .......... .......... .......... .......... 176 CACACGAGAA AAATGAATTT TGAAATTAGT TATGAATTTC GTTACTAATC TATCTCTAAT 6922 .......... .......... .......... .......... .......... .......... 176 ATGCAAAGTT TTGAATAATC TATCCCTAAT TGGTTACTAG ATATAGAACT AGCAATGATT 6862 .......... .......... .......... .......... .......... .......... 176 TTTGTTATTG ATTGAATAAT TTGTTCGATA TTGATTTTTG TTTTATGTTT CCTCCGTCCG 6802 .......... .......... .......... .......... .......... .......... 176 ATATTGTTTG TTATGGTTTC TATTTATAGA CTCAAACTAT AAAAACTTTG ACTAACATTT 6742 .......... .......... .......... .......... .......... .......... 176 GAAGATACAT TTTTTTATCA TATTAATATG AAAAGATTGT AATTTATAGT ACTTTTCATA 6682 .......... .......... .......... .......... .......... .......... 176 TTGTTTTAGA ATATTTAATT TTTTTGGTTT AAAGTATCGA ATTAATGTGA TTTAATTTAC 6622 .......... .......... .......... .......... .......... .......... 176 CTTTAGAAAT CAATCAAAAT TGACTTTCGA TAAGCGTAAC ATGACAAATA TTTCTGGACG 6562 .......... .......... .......... .......... .......... .......... 176 GAGGGAGTAT TGATTTTTTA TCGTTGTCAT CATGGTCGTC TTTGTTTGTT GGTTCATAAT 6502 .......... .......... .......... .......... .......... .......... 176 AAGATATTCT TGAGTTTAAA TGAGATGATT GTATATTTGA GTTTAATTTT GGAACATGCA 6442 .......... .......... .......... .......... .......... .......... 176 AGAGTTTTTG GATTTGATTT TGATCGGTAG ATGTACTAGT ACCTGCCACC AAAACATCGT 6382 .......... .......... .......... .......... .......... .......... 176 GAAGGATTCA GTGAACGACT TGAAACTTAG TAACACAAGA CAATTCACTG AATGGTTGTT 6322 .......... .......... .......... .......... .......... .......... 176 GGCTCTACCG GAGGAGTCTG AAATCAACAA CGTGTAACTG CTTGGGCAGA ATAAAAGAAC 6262 .......... .......... .......... .......... .......... .......... 176 TTAAATTGTT TTAATAGAAT TTTTTAAGTA ACATTGCAAT TATTTAAGCA ATACGAACGC 6202 .......... .......... .......... .......... .......... .......... 176 CCAATTGTAT TTTATTTTAT TTTTTTATAA TAAAAGAGTT TTGGAAGTAA TGAATTTTAA 6142 .......... .......... .......... .......... .......... .......... 176 TACAATATCA ATATTTAAAT AATGTTGAAT TCTTAGCTTA GGCATTGAAT CGCAATTGAA 6082 .......... .......... .......... .......... .......... .......... 176 AGTGAAAGCC CTTTTTTGCT ATTTCAAGTT ATGAATTCAG ATACTAAAGG ATAACGTCTT 6022 .......... .......... .......... .......... .......... .......... 176 TTAGAAGGAA GATATTAATG GGGTAAGTGA TTTTTAAAAG TTGACTTTTA TATAAAATTA 5962 .......... .......... .......... .......... .......... .......... 176 TCTTCTTCTT TTTTCTTTTT CTTTTTTGTA TATCGACTCA TTTAATTATC AGTTTAACTT 5902 .......... .......... .......... .......... .......... .......... 176 AATGTTCGAA TCTTTAAGCT TTTTAATTAA TATTGAATTT ATTATTTCTT TAAACTTATA 5842 .......... .......... .......... .......... .......... .......... 176 AATTCAAATC TAAACACTTA TTAAAATTTT AATGAATTTT CATATACTAT AGTATACTTG 5782 .......... .......... .......... .......... .......... .......... 176 AAAATGTTCC AAAAGCCGCC AATAAAAAAA TATTTCCATC TGTTTGACTT ATATTATGAC 5722 .......... .......... .......... .......... .......... .......... 176 ATGTAACGAG TTGTCCCTAC AATTTTATAT TTTCAGATCT AGGTACTTTA ATATATTAAC 5662 .......... .......... .......... .......... .......... .......... 176 TAGACTAATT TTTTTTCATT ATAATTAAAA ATTTTAAGAA AAAAACTGTA CTCCAGATAT 5602 .......... .......... .......... .......... .......... .......... 176 AATTTCAATT TAAAATTAAA ATACCATATA TAAGACAAAG CATCGATCAT AGATTGTTAT 5542 .......... .......... .......... .......... .......... .......... 176 TCAGATCTTA GCCACTTCAA ACAAACAAAT GTAAAAGAAA TGTGTACAAG GCAAATTAAA 5482 .......... .......... .......... .......... .......... .......... 176 GACAATGTCC ATCTTCAAAA CAAATTTAAC AAAAAAGAGA TTGGCTCAAC TCAAGATTTC 5422 .......... .......... .......... .......... .......... .......... 176 TACTTAATTA AGCCACTTCA AGAGTATTTG TAGGAATCTC CAATGGGAAA TTTGTTGTTT 5362 .......... .......... .......... .......... .......... .......... 176 CATTGTGAGT AGAGCCATAA GGACAAAACA TAACCTTGTA GTCTGTAGTC CAACTCTGAC 5302 | |||| | |||||||| | |||| | || | |||| | | ||| | | .......... ..A-CCATTA GGACAAAAAA CAACCCTATA ATTTGTACTA CCACTAGGGC 223 AAGTAAAAGT ACTTGTTGGA TCGTCTTGAG GATAACTATA GGCATCGGGA CATCTTTGTT 5242 ||||||| || || || ||| || ||||| | | || ||||| ||||| ||| |||||||||| AAGTAAATGT GCTAGTAGGA TCATCTTGTG GGTAGCTATA CGCATCAGGA CATCTTTGTT 283 TGAAAAATCT TGACAAATCG GTAGGACCAC ATGGACCTTG AGTGCAACAA TATTGTTGTC 5182 |||||||||| |||||||| ||||| |||| |||||||||| ||||||||| |||||||||| TGAAAAATCT CGACAAATCA GTAGGGCCAC ATGGACCTTG TGTGCAACAA TATTGTTGTC 343 CTCCGAATGT AGTACAAGGG TTGTTACATC CTCCGGGTAC CCTAAGTGAA CCAGGGCATT 5122 ||||||| || |||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CTCCGAACGT GGTACAAGGA TTGTTACATC CTCCGGGTAC CCTAAGTGAA CCAGGACATT 403 CACCGTTTAT ATTAGCAACA CATTGAATTG GATGACATTT TCCCGGCCCA GGGTTAGTTG 5062 |||| ||||| |||||| | || ||||||| ||| ||||| || | | || || || | CACCATTTAT ATTAGCCGTA CAATGAATTG CATGGCATTT CCCTCCACTA GGATTGGTCG 463 GGCCGAAAGA CATAGGGATG TTGAATCCAT CAATAACAGA AATGTCCCAG AAATCTAAGT 5002 || |||||| ||| || || || ||||||| | | | ||| |||||||||| ||||||| || GGGCGAAAGT CATTGGAATA TTAAATCCAT CGACTAAAGA AATGTCCCAG AAATCTAGGT 523 TGCTAAATTG ATTCAAAGCG TATTCAGCTA AGGTGTTTGG TGGTTTACCC CATCCTTTGC 4942 ||||||| || | ||| ||| || || || | ||||||||| |||||| ||| || || | | TGCTAAACTG GTCCAAGGCG TACTCGGCCA GGGTGTTTGG TGGTTTGCCC CACCCGGTAC 583 ATTCCAAGAC TCCACCACAA TCACCGGTCT GGCACCAACC TCTACCAGCA CCATCAAAAT 4882 ||| |||||| ||||||||| ||||| |||| | || |||| |||||||||| |||||||| | ATTGCAAGAC CCCACCACAA TCACCAGTCT GACATGAACC TCTACCAGCA CCATCAAAGT 643 TGCAATTAGT ACGACCCCAA ATACGTGCCA TTTTGGTGCC CGGTGGAGCC CAAAACCACC 4822 ||||||| || ||||||||| |||||||||| | || ||||| | || || | || TGCAATTCGT ACGACCCCAT ATACGTGCCA TCTTAGTGCC CCTCGGTGCA TTGATGACCC 703 AACTTTGACC TCTCTCGAGA CGTCGGCCAC CTCCTACGGG AGTCGCCGCT GCCCATACGG 4762 | |||| || || || ||| ||||| |||| | |||| || |||| ||| ||||| |||| ATGTTTGGCC TCGATCAAGA CGTCGACCAC CGCCTATTGG GGTCGACGCC GCCCAGACGG 763 TGTATGGACA GTTGTTATGG ACCTCAAATA CACCGGAAGC ATAAGTGTAA GTCACAAAGG 4702 |||||||||| |||||| | ||||| | | | || ||| |||||||||| |||||||| | TGTATGGACA GTTGTTGCGT ACCTC-GA-A -AGTGGCAGC ATAAGTGTAA GTCACAAAAG 820 CAAGGAGAAA GAACACTAAA CAAGTTGTCA A 4671 |||| || || ||| || ||| ||| | ||| | CAAGAAGGAA GAAAACAAAA GAAGATCTCA A 851 hqPGS_C08HBa0235H18.1-_SGN-U312653- (8541 8503,5349 4671) ******************************************************************************** EST sequence 8 -strand 832 n (File: SGN-U333797-) 1 TTTTTTTTTT TTTTGTGATG ATGTGACTTT TATTCATGTA ATTATATTAG GTTTATTACA 61 AGCCAATTAT ATAACTTCGA CTACTTCAAG CAATTTAAAA GAAAGTGACT CAATTTTACT 121 TAGCCTCTTC ATCACTTGAG GGCATCTCCA AGGGGAAATT TGGGCTAGTA ACACCATTAG 181 GACAAAAAAC AACCCTATAA TTTGTACTAC CACTAGGGCA AGTAAATGTG CTAGTAGGAT 241 CATCTTGTGG GTAGCTATAC GCATCAGGAC ATCTTTGTTT GAAAAATCTC GACAAATCAG 301 TAGGGCCACA TGGACCTTGT GTGCAACAAT ATTGTTGTCC TCCGAACGTG GTACAAGGAT 361 TGTTACATCC TCCGGGTACC CTAAGTGAAC CAGGACATTC ACCATTTATA TTAGCCGTAC 421 AATGAATTGC ATGGCATTTC CCTCCACTAG GATTGGTCGG GGCGAAAGTC ATTGGAATAT 481 TAAATCCATC GACTAAAGAA ATGTCCCAGA AATCTAGGTT GCTAAACTGG TCCAAGGCGT 541 ACTCGGCCAG GGTGTTTGGT GGTTTGCCCC ACCCGGTACA TTGCAAGACC CCACCACAAT 601 CACCAGTCTG ACATGAACCT CTACCATCAC CATCAAAGTT GCAATTCGTA CGACCCCATA 661 TACGTGCCAT CTTAGTGCCC CTCGGTGCAT TGATGACCCA TGTTTGGCCT CGATCAAGAC 721 GTCGACCACC GCCTATTGGG GTCGACGCCG CCCAGACGGT GTATGGACAG TTGTTGCGTA 781 CCTCGAAAGT GGCAGCATAA GTGTAAGTCA CAAAAGCAAG AAGGAAAAAA AA Predicted gene structure (within gDNA segment 9610 to 147): Exon 1 8541 8503 ( 39 n); cDNA 134 172 ( 39 n); score: 0.718 Intron 1 8502 5350 (3153 n); Pd: 0.156 (s: 0), Pa: 0.189 (s: 0.72) Exon 2 5349 4689 ( 661 n); cDNA 173 829 ( 657 n); score: 0.812 PPA cDNA 16 1 MATCH C08HBa0235H18.1- SGN-U333797- 0.812 700 0.841 C PGS_C08HBa0235H18.1-_SGN-U333797- (8541 8503,5349 4689) Alignment (genomic DNA sequence = upper lines): ACTTGTAGGC ATCTCCAATG GGAAATTTGT TGTTTCATTG TGAGTAGAGC CATAAGGACA 8482 ||||| ||| |||||||| | ||||||||| | | ACTTGAGGGC ATCTCCAAGG GGAAATTTGG GCTAGTAAC. .......... .......... 172 GAACATTATC TTGTAGTCTG TAGTCCAACT CTGACAAGTA AAAGTACTAG TTGGATCGTC 8422 .......... .......... .......... .......... .......... .......... 172 TTGAGGGTAA CTATAGGCAT CAGGACATCT TTGTTTGAAA AATCTTGACA ATTCAGTAGG 8362 .......... .......... .......... .......... .......... .......... 172 ACCACATGGA CCGTGATTAC AACAATATTG TTGTCCTCCG AATGTTGTAC AAGGGTTGTT 8302 .......... .......... .......... .......... .......... .......... 172 ACATCCTCCA GGTACCCTAA GTGAACCAGG GCATTCACCG TTTATATTGG CTGTGCATTG 8242 .......... .......... .......... .......... .......... .......... 172 AATTGGATGA CATTTTCCAG GGCCAGGCTT AGTTGGGCCA AAAGACATAG GGATGTTGAA 8182 .......... .......... .......... .......... .......... .......... 172 TCCATCAATA ACAGAAATAT CCCAAAAATC TAGGTTACCA AACTGGTTCA AAGCGTATTC 8122 .......... .......... .......... .......... .......... .......... 172 AGCTAAGGTG TTTGGTGGTT TACCCCATCC TTTGCAATCC AGGACTCCAC CACAATCACC 8062 .......... .......... .......... .......... .......... .......... 172 AGTCTGGCAC CAACCTCTTC CAGCACCATC AAAGTTGCAA TTAGTACGAC CCCAAATACG 8002 .......... .......... .......... .......... .......... .......... 172 TGCCATTTTA GTGCCAGGTG GGGCCCAAAA CCACCAACTC TGACCTCTCT CGAGACGTCG 7942 .......... .......... .......... .......... .......... .......... 172 ACCACCTCCT ACGGGGACCG CTGCCGCCCA AACGGTGTAG GGGCAGTTGT TATGGACCTC 7882 .......... .......... .......... .......... .......... .......... 172 AAATACACCG GAACCATAAG TGTAAGTCAC AAAGGCAAGG AGAAAAAACA CTAAACAAGT 7822 .......... .......... .......... .......... .......... .......... 172 TGTCAAGTGA CTCATTTTAG TATAAGAAGT TGTAGGATAT ATTTGCATAT CGAGCTAGGG 7762 .......... .......... .......... .......... .......... .......... 172 GTTTATATAG TGGTATGGCG GCTTTTTTTC ACTATGGACA TTAATCATAT AAATATTGGC 7702 .......... .......... .......... .......... .......... .......... 172 ACTTGTTATA AACATATATA GAAAATTAAA AAAAAAAATT GTATCCAAAA TATCTCCACT 7642 .......... .......... .......... .......... .......... .......... 172 TGAAAAAAAA AGCCGCCAAT ATAATATGAG TACAGCCTAT TATAAGTAAT ATATTTTGTT 7582 .......... .......... .......... .......... .......... .......... 172 CACTCCAGTC ATATTTCACA GTTCAACTTT TTGCTATTTT GAAAATTTAT GCATTAACAC 7522 .......... .......... .......... .......... .......... .......... 172 ATTATGATAT TTATAATGAT TAAAAAAAAA AGAGAAGATA TTTTTTAATT AAGTGATATA 7462 .......... .......... .......... .......... .......... .......... 172 TACGTATTAT TAGTTTTGTG TTTAACTATA TATTAATTTT AAATTATTTA GTTTAGTATA 7402 .......... .......... .......... .......... .......... .......... 172 TACAACAAAT CGGAAAAATG CATGGCAGGG CATGAAACCT AAAATTGTGG AAAATTTCCT 7342 .......... .......... .......... .......... .......... .......... 172 AATTTTTTTT GAACATTTTT TCATGAGAAA TTTAGTTAGT AGAGAATTCT CTTCATAATT 7282 .......... .......... .......... .......... .......... .......... 172 TTTATTGGTT ATGTTTTCAT AAATAAAATA ACTTAAAAAT TTTGAATTAC AAATTTGTAA 7222 .......... .......... .......... .......... .......... .......... 172 TTTTTGTTTA CAGACAATTG CCTTTTTTCC CTTGATTATT TTTTTCCGTC GTATATATAT 7162 .......... .......... .......... .......... .......... .......... 172 AGTGGATTTT TATATTAAAT TATTTATAGC ATATTTATCA AGTGGACATA ATAATTAATT 7102 .......... .......... .......... .......... .......... .......... 172 GAAAATGTGC ATGCATTCTA CAGTCAAAAA AGTTGAGCAA ATGGGTAGGC GTAGAGATGA 7042 .......... .......... .......... .......... .......... .......... 172 GTGGAACCTT AAAAGTTTGA ATTTTTTTTT TATTCGATAC AAGCTATGTA GGTCTTGTTT 6982 .......... .......... .......... .......... .......... .......... 172 CACACGAGAA AAATGAATTT TGAAATTAGT TATGAATTTC GTTACTAATC TATCTCTAAT 6922 .......... .......... .......... .......... .......... .......... 172 ATGCAAAGTT TTGAATAATC TATCCCTAAT TGGTTACTAG ATATAGAACT AGCAATGATT 6862 .......... .......... .......... .......... .......... .......... 172 TTTGTTATTG ATTGAATAAT TTGTTCGATA TTGATTTTTG TTTTATGTTT CCTCCGTCCG 6802 .......... .......... .......... .......... .......... .......... 172 ATATTGTTTG TTATGGTTTC TATTTATAGA CTCAAACTAT AAAAACTTTG ACTAACATTT 6742 .......... .......... .......... .......... .......... .......... 172 GAAGATACAT TTTTTTATCA TATTAATATG AAAAGATTGT AATTTATAGT ACTTTTCATA 6682 .......... .......... .......... .......... .......... .......... 172 TTGTTTTAGA ATATTTAATT TTTTTGGTTT AAAGTATCGA ATTAATGTGA TTTAATTTAC 6622 .......... .......... .......... .......... .......... .......... 172 CTTTAGAAAT CAATCAAAAT TGACTTTCGA TAAGCGTAAC ATGACAAATA TTTCTGGACG 6562 .......... .......... .......... .......... .......... .......... 172 GAGGGAGTAT TGATTTTTTA TCGTTGTCAT CATGGTCGTC TTTGTTTGTT GGTTCATAAT 6502 .......... .......... .......... .......... .......... .......... 172 AAGATATTCT TGAGTTTAAA TGAGATGATT GTATATTTGA GTTTAATTTT GGAACATGCA 6442 .......... .......... .......... .......... .......... .......... 172 AGAGTTTTTG GATTTGATTT TGATCGGTAG ATGTACTAGT ACCTGCCACC AAAACATCGT 6382 .......... .......... .......... .......... .......... .......... 172 GAAGGATTCA GTGAACGACT TGAAACTTAG TAACACAAGA CAATTCACTG AATGGTTGTT 6322 .......... .......... .......... .......... .......... .......... 172 GGCTCTACCG GAGGAGTCTG AAATCAACAA CGTGTAACTG CTTGGGCAGA ATAAAAGAAC 6262 .......... .......... .......... .......... .......... .......... 172 TTAAATTGTT TTAATAGAAT TTTTTAAGTA ACATTGCAAT TATTTAAGCA ATACGAACGC 6202 .......... .......... .......... .......... .......... .......... 172 CCAATTGTAT TTTATTTTAT TTTTTTATAA TAAAAGAGTT TTGGAAGTAA TGAATTTTAA 6142 .......... .......... .......... .......... .......... .......... 172 TACAATATCA ATATTTAAAT AATGTTGAAT TCTTAGCTTA GGCATTGAAT CGCAATTGAA 6082 .......... .......... .......... .......... .......... .......... 172 AGTGAAAGCC CTTTTTTGCT ATTTCAAGTT ATGAATTCAG ATACTAAAGG ATAACGTCTT 6022 .......... .......... .......... .......... .......... .......... 172 TTAGAAGGAA GATATTAATG GGGTAAGTGA TTTTTAAAAG TTGACTTTTA TATAAAATTA 5962 .......... .......... .......... .......... .......... .......... 172 TCTTCTTCTT TTTTCTTTTT CTTTTTTGTA TATCGACTCA TTTAATTATC AGTTTAACTT 5902 .......... .......... .......... .......... .......... .......... 172 AATGTTCGAA TCTTTAAGCT TTTTAATTAA TATTGAATTT ATTATTTCTT TAAACTTATA 5842 .......... .......... .......... .......... .......... .......... 172 AATTCAAATC TAAACACTTA TTAAAATTTT AATGAATTTT CATATACTAT AGTATACTTG 5782 .......... .......... .......... .......... .......... .......... 172 AAAATGTTCC AAAAGCCGCC AATAAAAAAA TATTTCCATC TGTTTGACTT ATATTATGAC 5722 .......... .......... .......... .......... .......... .......... 172 ATGTAACGAG TTGTCCCTAC AATTTTATAT TTTCAGATCT AGGTACTTTA ATATATTAAC 5662 .......... .......... .......... .......... .......... .......... 172 TAGACTAATT TTTTTTCATT ATAATTAAAA ATTTTAAGAA AAAAACTGTA CTCCAGATAT 5602 .......... .......... .......... .......... .......... .......... 172 AATTTCAATT TAAAATTAAA ATACCATATA TAAGACAAAG CATCGATCAT AGATTGTTAT 5542 .......... .......... .......... .......... .......... .......... 172 TCAGATCTTA GCCACTTCAA ACAAACAAAT GTAAAAGAAA TGTGTACAAG GCAAATTAAA 5482 .......... .......... .......... .......... .......... .......... 172 GACAATGTCC ATCTTCAAAA CAAATTTAAC AAAAAAGAGA TTGGCTCAAC TCAAGATTTC 5422 .......... .......... .......... .......... .......... .......... 172 TACTTAATTA AGCCACTTCA AGAGTATTTG TAGGAATCTC CAATGGGAAA TTTGTTGTTT 5362 .......... .......... .......... .......... .......... .......... 172 CATTGTGAGT AGAGCCATAA GGACAAAACA TAACCTTGTA GTCTGTAGTC CAACTCTGAC 5302 | |||| | |||||||| | |||| | || | |||| | | ||| | | .......... ..A-CCATTA GGACAAAAAA CAACCCTATA ATTTGTACTA CCACTAGGGC 219 AAGTAAAAGT ACTTGTTGGA TCGTCTTGAG GATAACTATA GGCATCGGGA CATCTTTGTT 5242 ||||||| || || || ||| || ||||| | | || ||||| ||||| ||| |||||||||| AAGTAAATGT GCTAGTAGGA TCATCTTGTG GGTAGCTATA CGCATCAGGA CATCTTTGTT 279 TGAAAAATCT TGACAAATCG GTAGGACCAC ATGGACCTTG AGTGCAACAA TATTGTTGTC 5182 |||||||||| |||||||| ||||| |||| |||||||||| ||||||||| |||||||||| TGAAAAATCT CGACAAATCA GTAGGGCCAC ATGGACCTTG TGTGCAACAA TATTGTTGTC 339 CTCCGAATGT AGTACAAGGG TTGTTACATC CTCCGGGTAC CCTAAGTGAA CCAGGGCATT 5122 ||||||| || |||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CTCCGAACGT GGTACAAGGA TTGTTACATC CTCCGGGTAC CCTAAGTGAA CCAGGACATT 399 CACCGTTTAT ATTAGCAACA CATTGAATTG GATGACATTT TCCCGGCCCA GGGTTAGTTG 5062 |||| ||||| |||||| | || ||||||| ||| ||||| || | | || || || | CACCATTTAT ATTAGCCGTA CAATGAATTG CATGGCATTT CCCTCCACTA GGATTGGTCG 459 GGCCGAAAGA CATAGGGATG TTGAATCCAT CAATAACAGA AATGTCCCAG AAATCTAAGT 5002 || |||||| ||| || || || ||||||| | | | ||| |||||||||| ||||||| || GGGCGAAAGT CATTGGAATA TTAAATCCAT CGACTAAAGA AATGTCCCAG AAATCTAGGT 519 TGCTAAATTG ATTCAAAGCG TATTCAGCTA AGGTGTTTGG TGGTTTACCC CATCCTTTGC 4942 ||||||| || | ||| ||| || || || | ||||||||| |||||| ||| || || | | TGCTAAACTG GTCCAAGGCG TACTCGGCCA GGGTGTTTGG TGGTTTGCCC CACCCGGTAC 579 ATTCCAAGAC TCCACCACAA TCACCGGTCT GGCACCAACC TCTACCAGCA CCATCAAAAT 4882 ||| |||||| ||||||||| ||||| |||| | || |||| ||||||| || |||||||| | ATTGCAAGAC CCCACCACAA TCACCAGTCT GACATGAACC TCTACCATCA CCATCAAAGT 639 TGCAATTAGT ACGACCCCAA ATACGTGCCA TTTTGGTGCC CGGTGGAGCC CAAAACCACC 4822 ||||||| || ||||||||| |||||||||| | || ||||| | || || | || TGCAATTCGT ACGACCCCAT ATACGTGCCA TCTTAGTGCC CCTCGGTGCA TTGATGACCC 699 AACTTTGACC TCTCTCGAGA CGTCGGCCAC CTCCTACGGG AGTCGCCGCT GCCCATACGG 4762 | |||| || || || ||| ||||| |||| | |||| || |||| ||| ||||| |||| ATGTTTGGCC TCGATCAAGA CGTCGACCAC CGCCTATTGG GGTCGACGCC GCCCAGACGG 759 TGTATGGACA GTTGTTATGG ACCTCAAATA CACCGGAAGC ATAAGTGTAA GTCACAAAGG 4702 |||||||||| |||||| | ||||| | | | || ||| |||||||||| |||||||| | TGTATGGACA GTTGTTGCGT ACCTC-GA-A -AGTGGCAGC ATAAGTGTAA GTCACAAAAG 816 CAAGGAGAAA GAA 4689 |||| || || || CAAGAAGGAA AAA 829 hqPGS_C08HBa0235H18.1-_SGN-U333797- (8541 8503,5349 4689) ******************************************************************************** EST sequence 5 -strand 1014 n (File: SGN-U312654-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTCAAAT GCACTGTTGT TTTATACATC 61 TAAGACAAAA GTACACATGA GATGTAACTC TTATTCCGGT CTTTAAGTTT GTTACGAACT 121 CTTATCAATA AAGTAAAAGT GAATATTTAA AAAACTGAGC TATTAAGATT TTTCATTACG 181 GTAGAGATCA GTTGACTAAT TGAGGCGATT TAAAATGAAG AAACTCAAAT TCACTTGGCC 241 ACTTCATCAG TACTTGCAGG CATCTCCAAG GGGAAATTTG GATCAGCAAC ACCATTAGGA 301 CAAAAGACAA CCCTATAGTT TGTACTACCA CCAGGGCAAG TAAATGTGCT TGTAGGATCG 361 TCTTGTGGGT AGCTATAAGC ATCGGGACAT CTTTTCTTGA AAAATTTGGA CAACTCTGTA 421 GGGCCACATG GACCTTGGGT GCAACAATAT TGTTGTCCTC CAAACGTGGT ACAAGGGTTG 481 TTACATCCTC CAGGTACCTT AAGGGCGCGA GGACATTCAC CATTTATATT GGCCGTGCAA 541 TGAATTGCGT GACATTTTCC TCCACTAGGT TTTGTTGGGG CAAAAGTCAT TGGAATATTA 601 AATCCATCGA CTAAAGAAAT GTCCCAAAAA TCTAAGTTGC TAAACTGGTC CAAGGCGTAC 661 TCGGCTAGGG TGTTTGGGGG TTTGCCCCAT CCGGTACACT GTAAGACTCC ACCACAATCA 721 CCAGTCTGAC ATGTACCTCT GCCTGCAGCA TTAAAGTTGC AACCAGTACG ACCCCATATA 781 CGTGCCATCT TAGTTCCCCT CGGAGCATTG ATGACCCATG TTTGGCCTCG ATTGAGACGT 841 CGACCACCGC CTATCGGAGT CGATGCCGCC CAAACGGTGT ATGGACAGTT GTTGCGTACC 901 TCAATAGTGG CAGCATAAGT ATAAGTCACA CAAAGAAGGA AGAAGAGAAC AAAAGAAGAT 961 GTCAAGTAGC CCATGTTTGT TGAAATGTAT ATATCAATTC GGCCGATTTG GCCG Predicted gene structure (within gDNA segment 13362 to 2526): Exon 1 8555 8503 ( 53 n); cDNA 238 290 ( 53 n); score: 0.755 Intron 1 8502 5350 (3153 n); Pd: 0.156 (s: 0.76), Pa: 0.189 (s: 0.72) Exon 2 5349 4706 ( 644 n); cDNA 291 930 ( 640 n); score: 0.793 PPA cDNA 35 1 MATCH C08HBa0235H18.1- SGN-U312654- 0.791 697 0.687 C PGS_C08HBa0235H18.1-_SGN-U312654- (8555 8503,5349 4706) Alignment (genomic DNA sequence = upper lines): GCAACTTCAA GAGTACTTGT AGGCATCTCC AATGGGAAAT TTGTTGTTTC ATTGTGAGTA 8496 || |||||| |||||||| |||||||||| || ||||||| ||| | | GCCACTTCAT CAGTACTTGC AGGCATCTCC AAGGGGAAAT TTGGATCAGC AAC....... 290 GAGCCATAAG GACAGAACAT TATCTTGTAG TCTGTAGTCC AACTCTGACA AGTAAAAGTA 8436 .......... .......... .......... .......... .......... .......... 290 CTAGTTGGAT CGTCTTGAGG GTAACTATAG GCATCAGGAC ATCTTTGTTT GAAAAATCTT 8376 .......... .......... .......... .......... .......... .......... 290 GACAATTCAG TAGGACCACA TGGACCGTGA TTACAACAAT ATTGTTGTCC TCCGAATGTT 8316 .......... .......... .......... .......... .......... .......... 290 GTACAAGGGT TGTTACATCC TCCAGGTACC CTAAGTGAAC CAGGGCATTC ACCGTTTATA 8256 .......... .......... .......... .......... .......... .......... 290 TTGGCTGTGC ATTGAATTGG ATGACATTTT CCAGGGCCAG GCTTAGTTGG GCCAAAAGAC 8196 .......... .......... .......... .......... .......... .......... 290 ATAGGGATGT TGAATCCATC AATAACAGAA ATATCCCAAA AATCTAGGTT ACCAAACTGG 8136 .......... .......... .......... .......... .......... .......... 290 TTCAAAGCGT ATTCAGCTAA GGTGTTTGGT GGTTTACCCC ATCCTTTGCA ATCCAGGACT 8076 .......... .......... .......... .......... .......... .......... 290 CCACCACAAT CACCAGTCTG GCACCAACCT CTTCCAGCAC CATCAAAGTT GCAATTAGTA 8016 .......... .......... .......... .......... .......... .......... 290 CGACCCCAAA TACGTGCCAT TTTAGTGCCA GGTGGGGCCC AAAACCACCA ACTCTGACCT 7956 .......... .......... .......... .......... .......... .......... 290 CTCTCGAGAC GTCGACCACC TCCTACGGGG ACCGCTGCCG CCCAAACGGT GTAGGGGCAG 7896 .......... .......... .......... .......... .......... .......... 290 TTGTTATGGA CCTCAAATAC ACCGGAACCA TAAGTGTAAG TCACAAAGGC AAGGAGAAAA 7836 .......... .......... .......... .......... .......... .......... 290 AACACTAAAC AAGTTGTCAA GTGACTCATT TTAGTATAAG AAGTTGTAGG ATATATTTGC 7776 .......... .......... .......... .......... .......... .......... 290 ATATCGAGCT AGGGGTTTAT ATAGTGGTAT GGCGGCTTTT TTTCACTATG GACATTAATC 7716 .......... .......... .......... .......... .......... .......... 290 ATATAAATAT TGGCACTTGT TATAAACATA TATAGAAAAT TAAAAAAAAA AATTGTATCC 7656 .......... .......... .......... .......... .......... .......... 290 AAAATATCTC CACTTGAAAA AAAAAGCCGC CAATATAATA TGAGTACAGC CTATTATAAG 7596 .......... .......... .......... .......... .......... .......... 290 TAATATATTT TGTTCACTCC AGTCATATTT CACAGTTCAA CTTTTTGCTA TTTTGAAAAT 7536 .......... .......... .......... .......... .......... .......... 290 TTATGCATTA ACACATTATG ATATTTATAA TGATTAAAAA AAAAAGAGAA GATATTTTTT 7476 .......... .......... .......... .......... .......... .......... 290 AATTAAGTGA TATATACGTA TTATTAGTTT TGTGTTTAAC TATATATTAA TTTTAAATTA 7416 .......... .......... .......... .......... .......... .......... 290 TTTAGTTTAG TATATACAAC AAATCGGAAA AATGCATGGC AGGGCATGAA ACCTAAAATT 7356 .......... .......... .......... .......... .......... .......... 290 GTGGAAAATT TCCTAATTTT TTTTGAACAT TTTTTCATGA GAAATTTAGT TAGTAGAGAA 7296 .......... .......... .......... .......... .......... .......... 290 TTCTCTTCAT AATTTTTATT GGTTATGTTT TCATAAATAA AATAACTTAA AAATTTTGAA 7236 .......... .......... .......... .......... .......... .......... 290 TTACAAATTT GTAATTTTTG TTTACAGACA ATTGCCTTTT TTCCCTTGAT TATTTTTTTC 7176 .......... .......... .......... .......... .......... .......... 290 CGTCGTATAT ATATAGTGGA TTTTTATATT AAATTATTTA TAGCATATTT ATCAAGTGGA 7116 .......... .......... .......... .......... .......... .......... 290 CATAATAATT AATTGAAAAT GTGCATGCAT TCTACAGTCA AAAAAGTTGA GCAAATGGGT 7056 .......... .......... .......... .......... .......... .......... 290 AGGCGTAGAG ATGAGTGGAA CCTTAAAAGT TTGAATTTTT TTTTTATTCG ATACAAGCTA 6996 .......... .......... .......... .......... .......... .......... 290 TGTAGGTCTT GTTTCACACG AGAAAAATGA ATTTTGAAAT TAGTTATGAA TTTCGTTACT 6936 .......... .......... .......... .......... .......... .......... 290 AATCTATCTC TAATATGCAA AGTTTTGAAT AATCTATCCC TAATTGGTTA CTAGATATAG 6876 .......... .......... .......... .......... .......... .......... 290 AACTAGCAAT GATTTTTGTT ATTGATTGAA TAATTTGTTC GATATTGATT TTTGTTTTAT 6816 .......... .......... .......... .......... .......... .......... 290 GTTTCCTCCG TCCGATATTG TTTGTTATGG TTTCTATTTA TAGACTCAAA CTATAAAAAC 6756 .......... .......... .......... .......... .......... .......... 290 TTTGACTAAC ATTTGAAGAT ACATTTTTTT ATCATATTAA TATGAAAAGA TTGTAATTTA 6696 .......... .......... .......... .......... .......... .......... 290 TAGTACTTTT CATATTGTTT TAGAATATTT AATTTTTTTG GTTTAAAGTA TCGAATTAAT 6636 .......... .......... .......... .......... .......... .......... 290 GTGATTTAAT TTACCTTTAG AAATCAATCA AAATTGACTT TCGATAAGCG TAACATGACA 6576 .......... .......... .......... .......... .......... .......... 290 AATATTTCTG GACGGAGGGA GTATTGATTT TTTATCGTTG TCATCATGGT CGTCTTTGTT 6516 .......... .......... .......... .......... .......... .......... 290 TGTTGGTTCA TAATAAGATA TTCTTGAGTT TAAATGAGAT GATTGTATAT TTGAGTTTAA 6456 .......... .......... .......... .......... .......... .......... 290 TTTTGGAACA TGCAAGAGTT TTTGGATTTG ATTTTGATCG GTAGATGTAC TAGTACCTGC 6396 .......... .......... .......... .......... .......... .......... 290 CACCAAAACA TCGTGAAGGA TTCAGTGAAC GACTTGAAAC TTAGTAACAC AAGACAATTC 6336 .......... .......... .......... .......... .......... .......... 290 ACTGAATGGT TGTTGGCTCT ACCGGAGGAG TCTGAAATCA ACAACGTGTA ACTGCTTGGG 6276 .......... .......... .......... .......... .......... .......... 290 CAGAATAAAA GAACTTAAAT TGTTTTAATA GAATTTTTTA AGTAACATTG CAATTATTTA 6216 .......... .......... .......... .......... .......... .......... 290 AGCAATACGA ACGCCCAATT GTATTTTATT TTATTTTTTT ATAATAAAAG AGTTTTGGAA 6156 .......... .......... .......... .......... .......... .......... 290 GTAATGAATT TTAATACAAT ATCAATATTT AAATAATGTT GAATTCTTAG CTTAGGCATT 6096 .......... .......... .......... .......... .......... .......... 290 GAATCGCAAT TGAAAGTGAA AGCCCTTTTT TGCTATTTCA AGTTATGAAT TCAGATACTA 6036 .......... .......... .......... .......... .......... .......... 290 AAGGATAACG TCTTTTAGAA GGAAGATATT AATGGGGTAA GTGATTTTTA AAAGTTGACT 5976 .......... .......... .......... .......... .......... .......... 290 TTTATATAAA ATTATCTTCT TCTTTTTTCT TTTTCTTTTT TGTATATCGA CTCATTTAAT 5916 .......... .......... .......... .......... .......... .......... 290 TATCAGTTTA ACTTAATGTT CGAATCTTTA AGCTTTTTAA TTAATATTGA ATTTATTATT 5856 .......... .......... .......... .......... .......... .......... 290 TCTTTAAACT TATAAATTCA AATCTAAACA CTTATTAAAA TTTTAATGAA TTTTCATATA 5796 .......... .......... .......... .......... .......... .......... 290 CTATAGTATA CTTGAAAATG TTCCAAAAGC CGCCAATAAA AAAATATTTC CATCTGTTTG 5736 .......... .......... .......... .......... .......... .......... 290 ACTTATATTA TGACATGTAA CGAGTTGTCC CTACAATTTT ATATTTTCAG ATCTAGGTAC 5676 .......... .......... .......... .......... .......... .......... 290 TTTAATATAT TAACTAGACT AATTTTTTTT CATTATAATT AAAAATTTTA AGAAAAAAAC 5616 .......... .......... .......... .......... .......... .......... 290 TGTACTCCAG ATATAATTTC AATTTAAAAT TAAAATACCA TATATAAGAC AAAGCATCGA 5556 .......... .......... .......... .......... .......... .......... 290 TCATAGATTG TTATTCAGAT CTTAGCCACT TCAAACAAAC AAATGTAAAA GAAATGTGTA 5496 .......... .......... .......... .......... .......... .......... 290 CAAGGCAAAT TAAAGACAAT GTCCATCTTC AAAACAAATT TAACAAAAAA GAGATTGGCT 5436 .......... .......... .......... .......... .......... .......... 290 CAACTCAAGA TTTCTACTTA ATTAAGCCAC TTCAAGAGTA TTTGTAGGAA TCTCCAATGG 5376 .......... .......... .......... .......... .......... .......... 290 GAAATTTGTT GTTTCATTGT GAGTAGAGCC ATAAGGACAA AACATAACCT TGTAGTCTGT 5316 | || || ||||||| || | |||| | |||| ||| .......... .......... ......A-CC ATTAGGACAA AAGACAACCC TATAGTTTGT 323 AGTCCAACTC TGACAAGTAA AAGTACTTGT TGGATCGTCT TGAGGATAAC TATAGGCATC 5256 | | | || | ||||||| | || ||||| ||||||||| || || || | |||| ||||| ACTACCACCA GGGCAAGTAA ATGTGCTTGT AGGATCGTCT TGTGGGTAGC TATAAGCATC 383 GGGACATCTT TGTTTGAAAA ATCTTGACAA ATCGGTAGGA CCACATGGAC CTTGAGTGCA 5196 |||||||||| | ||||||| || | ||||| || ||||| |||||||||| |||| ||||| GGGACATCTT TTCTTGAAAA ATTTGGACAA CTCTGTAGGG CCACATGGAC CTTGGGTGCA 443 ACAATATTGT TGTCCTCCGA ATGTAGTACA AGGGTTGTTA CATCCTCCGG GTACCCTAAG 5136 |||||||||| |||||||| | | || ||||| |||||||||| |||||||| | ||||| |||| ACAATATTGT TGTCCTCCAA ACGTGGTACA AGGGTTGTTA CATCCTCCAG GTACCTTAAG 503 TGAACCAGGG CATTCACCGT TTATATTAGC AACACATTGA ATTGGATGAC ATTTTCCCGG 5076 | | ||| |||||||| | ||||||| || || ||| |||| |||| ||||||| GGCGCGAGGA CATTCACCAT TTATATTGGC CGTGCAATGA ATTGCGTGAC ATTTTCCTCC 563 CCCAGGGTTA GTTGGGCCGA AAGACATAGG GATGTTGAAT CCATCAATAA CAGAAATGTC 5016 | ||| || |||||| | | ||| ||| || || || ||| ||||| | | ||||||||| ACTAGGTTTT GTTGGGGCAA AAGTCATTGG AATATTAAAT CCATCGACTA AAGAAATGTC 623 CCAGAAATCT AAGTTGCTAA ATTGATTCAA AGCGTATTCA GCTAAGGTGT TTGGTGGTTT 4956 ||| |||||| |||||||||| | || | ||| ||||| || |||| ||||| |||| ||||| CCAAAAATCT AAGTTGCTAA ACTGGTCCAA GGCGTACTCG GCTAGGGTGT TTGGGGGTTT 683 ACCCCATCCT TTGCATTCCA AGACTCCACC ACAATCACCG GTCTGGCACC AACCTCTACC 4896 |||||||| | || | | |||||||||| ||||||||| ||||| || |||||| || GCCCCATCCG GTACACTGTA AGACTCCACC ACAATCACCA GTCTGACATG TACCTCTGCC 743 AGCACCATCA AAATTGCAAT TAGTACGACC CCAAATACGT GCCATTTTGG TGCCCGGTGG 4836 ||| ||| | || |||||| ||||||||| ||| |||||| ||||| || | | ||| || TGCAGCATTA AAGTTGCAAC CAGTACGACC CCATATACGT GCCATCTTAG TTCCCCTCGG 803 AGCCCAAAAC CACCAACTTT GACCTCTCTC GAGACGTCGG CCACCTCCTA CGGGAGTCGC 4776 ||| | ||| ||| | |||| | ||||||||| ||||| |||| ||||||| AGCATTGATG ACCCATGTTT GGCCTCGATT GAGACGTCGA CCACCGCCTA TCGGAGTCGA 863 CGCTGCCCAT ACGGTGTATG GACAGTTGTT ATGGACCTCA AATACACCGG AAGCATAAGT 4716 || ||||| |||||||||| |||||||||| | ||||| ||| | || ||||||||| TGCCGCCCAA ACGGTGTATG GACAGTTGTT GCGTACCTC- AAT--AGTGG CAGCATAAGT 920 GTAAGTCACA 4706 ||||||||| ATAAGTCACA 930 hqPGS_C08HBa0235H18.1-_SGN-U312654- (8555 8503,5349 4706) ******************************************************************************** EST sequence 14 -strand 1013 n (File: SGN-U314100-) 1 TTTTTTTTTT TTTTTCAATT TAAAATTAAA ATACCATATA TAAGACAAAG CATCGATCAT 61 AGATTGTTAT TCAGATCTTA GCCACTTCAA ACAAACAAAT GTAAAAGAAA TGTGTACAAG 121 GCAAATTAAA GACAATGTCC ATCTTCAAAA CAAATTTAAC AAAAAAGAGA TTGGCTCAAC 181 TCAAGATTTC TACTTAATTA AGCCACTTCA AGAGTATTTG TAGGAATCTC CAATGGGAAA 241 TTTGTTGTTT CATTGTGAGT AGAGCCATAA GGACAAAACA TAACCTTGTA GTCTGTAGTC 301 CAACTCTGAC AAGTAAAAGT ACTTGTTGGA TCGTCTTGAG GATAACTATA GGCATCGGGA 361 CATCTTTGTT TGAAAAATCT TGACAAATCG GTAGGACCAC ATGGACCTTG AGTGCAACAA 421 TATTGTTGTC CTCCGAATGT AGTACAAGGG TTGTTACATC CTCCGGGTAC CCTAAGTGAA 481 CCAGGGCATT CACCGTTTAT ATTAGCAACA CATTGAATTG GATGACATTT TCCCGGCCCA 541 GGGTTAGTTG GGCCGAAAGA CATAGGGATG TTGAATCCAT CAATAACAGA AATGTCCCAG 601 AAATCTAAGT TGCTAAATTG ATTCAAAGCG TATTCAGCTA AGGTGTTTGG TGGTTTACCC 661 CATCCTTTGC ATTCCAAGAC TCCACCACAA TCACCGGTCT GGCACCAACC TCTACCAGCA 721 CCATCAAAAT TGCAATTAGT ACGACCCCAA ATACGTGCCA TTTTGGTGCC CGGTGGAGCC 781 CAAAACCACC AACTTTGACC TCTCTCGAGA CGTCGGCCAC CTCCTACGGG AGTCGCCGCT 841 GCCCATACGG TGTATGGACA GTTGTTATGG ACCTCAAATA CACCGGAAGC ATAAGTGTAA 901 GTCACAAAGG CAAGGAGAAA GAACACTAAA CAAGTTGTCA AATGACTCAT TTTAGAATAA 961 AAGAAGAATA TTTGGTTTGT TGATCAATTC GGCCGATTGG CCGCCAATCG CCC Predicted gene structure (within gDNA segment 6329 to 3738): Exon 1 5599 4628 ( 972 n); cDNA 13 984 ( 972 n); score: 1.000 PPA cDNA 12 1 MATCH C08HBa0235H18.1- SGN-U314100- 1.000 972 0.960 C PGS_C08HBa0235H18.1-_SGN-U314100- (5599 4628) Alignment (genomic DNA sequence = upper lines): TTTCAATTTA AAATTAAAAT ACCATATATA AGACAAAGCA TCGATCATAG ATTGTTATTC 5540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAATTTA AAATTAAAAT ACCATATATA AGACAAAGCA TCGATCATAG ATTGTTATTC 72 AGATCTTAGC CACTTCAAAC AAACAAATGT AAAAGAAATG TGTACAAGGC AAATTAAAGA 5480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCTTAGC CACTTCAAAC AAACAAATGT AAAAGAAATG TGTACAAGGC AAATTAAAGA 132 CAATGTCCAT CTTCAAAACA AATTTAACAA AAAAGAGATT GGCTCAACTC AAGATTTCTA 5420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGTCCAT CTTCAAAACA AATTTAACAA AAAAGAGATT GGCTCAACTC AAGATTTCTA 192 CTTAATTAAG CCACTTCAAG AGTATTTGTA GGAATCTCCA ATGGGAAATT TGTTGTTTCA 5360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAATTAAG CCACTTCAAG AGTATTTGTA GGAATCTCCA ATGGGAAATT TGTTGTTTCA 252 TTGTGAGTAG AGCCATAAGG ACAAAACATA ACCTTGTAGT CTGTAGTCCA ACTCTGACAA 5300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAGTAG AGCCATAAGG ACAAAACATA ACCTTGTAGT CTGTAGTCCA ACTCTGACAA 312 GTAAAAGTAC TTGTTGGATC GTCTTGAGGA TAACTATAGG CATCGGGACA TCTTTGTTTG 5240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAAAGTAC TTGTTGGATC GTCTTGAGGA TAACTATAGG CATCGGGACA TCTTTGTTTG 372 AAAAATCTTG ACAAATCGGT AGGACCACAT GGACCTTGAG TGCAACAATA TTGTTGTCCT 5180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCTTG ACAAATCGGT AGGACCACAT GGACCTTGAG TGCAACAATA TTGTTGTCCT 432 CCGAATGTAG TACAAGGGTT GTTACATCCT CCGGGTACCC TAAGTGAACC AGGGCATTCA 5120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAATGTAG TACAAGGGTT GTTACATCCT CCGGGTACCC TAAGTGAACC AGGGCATTCA 492 CCGTTTATAT TAGCAACACA TTGAATTGGA TGACATTTTC CCGGCCCAGG GTTAGTTGGG 5060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTTATAT TAGCAACACA TTGAATTGGA TGACATTTTC CCGGCCCAGG GTTAGTTGGG 552 CCGAAAGACA TAGGGATGTT GAATCCATCA ATAACAGAAA TGTCCCAGAA ATCTAAGTTG 5000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAAAGACA TAGGGATGTT GAATCCATCA ATAACAGAAA TGTCCCAGAA ATCTAAGTTG 612 CTAAATTGAT TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA TCCTTTGCAT 4940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAATTGAT TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA TCCTTTGCAT 672 TCCAAGACTC CACCACAATC ACCGGTCTGG CACCAACCTC TACCAGCACC ATCAAAATTG 4880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGACTC CACCACAATC ACCGGTCTGG CACCAACCTC TACCAGCACC ATCAAAATTG 732 CAATTAGTAC GACCCCAAAT ACGTGCCATT TTGGTGCCCG GTGGAGCCCA AAACCACCAA 4820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTAGTAC GACCCCAAAT ACGTGCCATT TTGGTGCCCG GTGGAGCCCA AAACCACCAA 792 CTTTGACCTC TCTCGAGACG TCGGCCACCT CCTACGGGAG TCGCCGCTGC CCATACGGTG 4760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGACCTC TCTCGAGACG TCGGCCACCT CCTACGGGAG TCGCCGCTGC CCATACGGTG 852 TATGGACAGT TGTTATGGAC CTCAAATACA CCGGAAGCAT AAGTGTAAGT CACAAAGGCA 4700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGACAGT TGTTATGGAC CTCAAATACA CCGGAAGCAT AAGTGTAAGT CACAAAGGCA 912 AGGAGAAAGA ACACTAAACA AGTTGTCAAA TGACTCATTT TAGAATAAAA GAAGAATATT 4640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA ACACTAAACA AGTTGTCAAA TGACTCATTT TAGAATAAAA GAAGAATATT 972 TGGTTTGTTG AT 4628 |||||||||| || TGGTTTGTTG AT 984 hqPGS_C08HBa0235H18.1-_SGN-U314100- (5599 4628) ******************************************************************************** EST sequence 12 -strand 968 n (File: SGN-U314099-) 1 TTTTTTTTTT TTTTTACTCC AAATGCACTC TTGTGTGAGA ATTTTGAACA TCATGTGTAA 61 GACAAATTAA AGTACAATAT GTTATTGAAA TCTTAGCCAC CTCAAGATAA CAAACTAAAA 121 GAAATGTGGA TAATACAAAA GACAAGTAAT GAACAAAACT CAACCATTTT GAACAAGAAA 181 GAGGTGGCTA CACTCATGAT GAATCTACTT ATTAAGCAAC TTCAAGAGTA CTTGTAGGCA 241 TCTCCAATGG GAAATTTGTT GTTTCATTGT GAGTAGAGCC ATAAGGACAG AACATTATCT 301 TGTAGTCTGT AGTCCAACTC TGACAAGTAA AAGTACTAGT TGGATCGTCT TGAGGGTAAC 361 TATAGGCATC AGGACATCTT TGTTTGAAAA ATCTTGACAA TTCAGTAGGA CCACATGGAC 421 CGTGATTACA ACAATATTGT TGTCCTCCGA ATGTTGTACA AGGGTTGTTA CATCCTCCAG 481 GTACCCTAAG TGAACCAGGG CATTCACCGT TTATATTGGC TGTGCATTGA ATTGGATGAC 541 ATTTTCCAGG GCCAGGCTTA GTTGGGCCAA AAGACATAGG GATGTTGAAT CCATCAATAA 601 CAGAAATATC CCAAAAATCT AGGTTACCAA ACTGGTTCAA AGCGTATTCA GCTAAGGTGT 661 TTGGTGGTTT ACCCCATCCT TTGCAATCCA GGACTCCACC ACAATCACCA GTCTGGCACC 721 AACCTCTTCC AGCACCATCA AAGTTGCAAT TAGTACGACC CCAAATACGT GCCATTTTAG 781 TGCCAGGTGG GGCCCAAAAC CACCAACTCT GACCTCTCTC GAGACGTCGA CCACCTCCTA 841 CGGGGACCGC TGCCGCCCAA ACGGTGTAGG GGCAGTTGTT ATGGACCTCA AATACACCGG 901 AACCATAAGT GTAAGTCACA AAGGCAAGGA GAAAAAACAC TAAACAAGTT GTCAAGTGAC 961 TCATTTTA Predicted gene structure (within gDNA segment 8386 to 3941): Exon 1 5547 4658 ( 890 n); cDNA 80 968 ( 889 n); score: 0.892 PPA cDNA 15 1 MATCH C08HBa0235H18.1- SGN-U314099- 0.892 890 0.919 C PGS_C08HBa0235H18.1-_SGN-U314099- (5547 4658) Alignment (genomic DNA sequence = upper lines): TGTTATTCAG ATCTTAGCCA CTTCAAACAA ACAAATGTAA AAGAAATGTG TACAAGGCAA 5488 ||||||| | |||||||||| | |||| | ||||| ||| |||||||||| | || ||| TGTTATTGAA ATCTTAGCCA CCTCAAGATA ACAAA-CTAA AAGAAATGTG GATAATACAA 138 ATTAAAGACA ATGTCCATCT TCAAAACAAA TTTAACAAAA AAGAGATTGG CTCAACTCAA 5428 | | | | ||| || || || || ||||| | ||||| ||| || ||||| AAGACAAGTA ATGAACAAAA CTCAACCATT TTGAACAAGA AAGAG-GTGG CTACACTCAT 197 GAT--TTCTA CTTAATTAAG CCACTTCAAG AGTATTTGTA GGAATCTCCA ATGGGAAATT 5370 ||| |||| ||| |||||| | |||||||| |||| ||||| || ||||||| |||||||||| GATGAATCTA CTT-ATTAAG CAACTTCAAG AGTACTTGTA GGCATCTCCA ATGGGAAATT 256 TGTTGTTTCA TTGTGAGTAG AGCCATAAGG ACAAAACATA ACCTTGTAGT CTGTAGTCCA 5310 |||||||||| |||||||||| |||||||||| ||| ||||| | |||||||| |||||||||| TGTTGTTTCA TTGTGAGTAG AGCCATAAGG ACAGAACATT ATCTTGTAGT CTGTAGTCCA 316 ACTCTGACAA GTAAAAGTAC TTGTTGGATC GTCTTGAGGA TAACTATAGG CATCGGGACA 5250 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| |||| ||||| ACTCTGACAA GTAAAAGTAC TAGTTGGATC GTCTTGAGGG TAACTATAGG CATCAGGACA 376 TCTTTGTTTG AAAAATCTTG ACAAATCGGT AGGACCACAT GGACCTTGAG TGCAACAATA 5190 |||||||||| |||||||||| |||| || || |||||||||| ||||| ||| | |||||||| TCTTTGTTTG AAAAATCTTG ACAATTCAGT AGGACCACAT GGACCGTGAT TACAACAATA 436 TTGTTGTCCT CCGAATGTAG TACAAGGGTT GTTACATCCT CCGGGTACCC TAAGTGAACC 5130 |||||||||| |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| TTGTTGTCCT CCGAATGTTG TACAAGGGTT GTTACATCCT CCAGGTACCC TAAGTGAACC 496 AGGGCATTCA CCGTTTATAT TAGCAACACA TTGAATTGGA TGACATTTTC CCGGCCCAGG 5070 |||||||||| |||||||||| | || || |||||||||| |||||||||| | || ||||| AGGGCATTCA CCGTTTATAT TGGCTGTGCA TTGAATTGGA TGACATTTTC CAGGGCCAGG 556 GTTAGTTGGG CCGAAAGACA TAGGGATGTT GAATCCATCA ATAACAGAAA TGTCCCAGAA 5010 ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| | ||||| || CTTAGTTGGG CCAAAAGACA TAGGGATGTT GAATCCATCA ATAACAGAAA TATCCCAAAA 616 ATCTAAGTTG CTAAATTGAT TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA 4950 ||||| ||| | ||| || | |||||||||| |||||||||| |||||||||| |||||||||| ATCTAGGTTA CCAAACTGGT TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA 676 TCCTTTGCAT TCCAAGACTC CACCACAATC ACCGGTCTGG CACCAACCTC TACCAGCACC 4890 ||||||||| |||| ||||| |||||||||| ||| |||||| |||||||||| | |||||||| TCCTTTGCAA TCCAGGACTC CACCACAATC ACCAGTCTGG CACCAACCTC TTCCAGCACC 736 ATCAAAATTG CAATTAGTAC GACCCCAAAT ACGTGCCATT TTGGTGCCCG GTGGAGCCCA 4830 |||||| ||| |||||||||| |||||||||| |||||||||| || ||||| | |||| ||||| ATCAAAGTTG CAATTAGTAC GACCCCAAAT ACGTGCCATT TTAGTGCCAG GTGGGGCCCA 796 AAACCACCAA CTTTGACCTC TCTCGAGACG TCGGCCACCT CCTACGGGAG TCGCCGCTGC 4770 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||| ||| || || AAACCACCAA CTCTGACCTC TCTCGAGACG TCGACCACCT CCTACGGGGA CCGCTGCCGC 856 CCATACGGTG TATGGACAGT TGTTATGGAC CTCAAATACA CCGGAAGCAT AAGTGTAAGT 4710 ||| |||||| || || |||| |||||||||| |||||||||| |||||| ||| |||||||||| CCAAACGGTG TAGGGGCAGT TGTTATGGAC CTCAAATACA CCGGAACCAT AAGTGTAAGT 916 CACAAAGGCA AGGAGAAAGA ACACTAAACA AGTTGTCAAA TGACTCATTT TA 4658 |||||||||| |||||||| | |||||||||| ||||||||| |||||||||| || CACAAAGGCA AGGAGAAAAA ACACTAAACA AGTTGTCAAG TGACTCATTT TA 968 hqPGS_C08HBa0235H18.1-_SGN-U314099- (5547 4658) ******************************************************************************** EST sequence 10 -strand 892 n (File: SGN-U333798-) 1 ATAGTTGGTA CGNCAGGGTT TCCCAGTCAC GACGTGTTAA ACGACGCCCA GTGATGTAAT 61 ACGACTCACT ATAGGCGAAA TGGGTACCGG CCCCCCCTCG AGTTTTTTTT TTTTTTTTTT 121 TTTAAAAAAC TGAGCTATAA AGATTTTCAT TACGGTAGAG ATCAGTTGAC TAATGAGGCG 181 ATTAAAATGA GAACTNNCAA TTTCACTTGG CCACTTCATC AGTACTTGCA GGCATCTCAA 241 GGGGAATTNG GGATCAGCAC ACCCATTAGG ACAAAAGACA ACCCTATAGT TTGTACTACC 301 ACCAGGGGCA AGTAAATGTG CTTGTAGGAT CGTCTTGTGG GTAGCTATAA GCATCGGGAC 361 ATCTTTTCTT GAAAAATTTG GACAACTCTG TAGGGCCACA TGGACCTTGG GTGCAACAAT 421 ATTGTTGTCC TCCAAACGTG GTACAAGGGT TGTTACATCC TCCAGGTACC TTAAGGGCGC 481 GAGGACATTC ACCATTTATA TTGGCCGTGC AATGAATTGC GTGACATTTT CCTCCACTAG 541 GTTTTGTTGG GGCAAAAGTC ATTGGAATAT TAAATCCATC GACTAAAGAA ATGTCCCAAA 601 AATCTAAGTT GCTAAACTGG TCCAAGGCGT ACTCGGCTAG GGTGTTTGGG GGTTTGCCCC 661 ATCCGGTACA CTGTAAGACT CCACCACAAT CACCAGTCTG ACATGTACCT CTGCCTGCAG 721 CATTAAAGTT GCAACCAGTA CGACCCCATA TACGTGCCAT CTTAGTTCCC CTCGGAGCAT 781 TGATGACCCA TGTTTGGCCT CGATTGAGAC GTCGACCACC GCCTATCGGA GCCTGCAGCC 841 CGGGGGATCC ACTAGTTCTA GAGCGGCCGC CACCGCGGTG AGCTCCAGCT TT Predicted gene structure (within gDNA segment 13082 to 3466): Exon 1 10234 10229 ( 6 n); cDNA 184 189 ( 6 n); score: 0.833 Intron 1 10228 10030 ( 199 n); Pd: 0.587 (s: 0), Pa: 0.817 (s: 0) Exon 2 10029 10015 ( 15 n); cDNA 190 202 ( 13 n); score: 0.667 Intron 2 10014 8563 (1452 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76) Exon 3 8562 8503 ( 60 n); cDNA 203 260 ( 58 n); score: 0.650 Intron 3 8502 5350 (3153 n); Pd: 0.156 (s: 0.68), Pa: 0.189 (s: 0.68) Exon 4 5349 4781 ( 569 n); cDNA 261 830 ( 570 n); score: 0.788 MATCH C08HBa0235H18.1- SGN-U333798- 0.775 650 0.729 C PGS_C08HBa0235H18.1-_SGN-U333798- (10234 10229,10029 10015,8562 8503,5349 4781) Alignment (genomic DNA sequence = upper lines): AAAAAGGCGA ACGAATTATA CAATTGCAGT GAAATACAAT TTTCTCTTGC TTTATACAAC 10175 |||| | AAAATG.... .......... .......... .......... .......... .......... 189 AGAAGTGTAT AAATTGTGTT TATGTTTTTG TATAAAGCGA GAGAAAAACA TATATTTTTT 10115 .......... .......... .......... .......... .......... .......... 189 TCCTATACAC TTATAATTAT GCAATATACA TACATTTTAC TTCGATTCAA TTGTATGCAA 10055 .......... .......... .......... .......... .......... .......... 189 AATAAATTTT ATACAAATAT TGCAGAGAAT TATACAATAT GCATTATACA ATTGCAGTGA 9995 |||| | |||| | .......... .......... .....AGAAC TNN-CAAT-T .......... .......... 202 AATATGATAG CGAATTATAC AATTGCGGCG AAATAGGCCA GCAAATTATA CAATTGTATA 9935 .......... .......... .......... .......... .......... .......... 202 TTATAGTGAA TTATACAGTT TTATGTTTGC TATGGAGCGT AATTATACAA ATTTTGCTAT 9875 .......... .......... .......... .......... .......... .......... 202 AACACACAAA TATAAATTTT TTATTTGCTA TATGCGAAAG TTGTCCTAAA ACAATTAACA 9815 .......... .......... .......... .......... .......... .......... 202 ACATTACTCT TGAAAATAAT ATTCTTTTGT CAATATAGTA AGTAATGATG AATAATTATT 9755 .......... .......... .......... .......... .......... .......... 202 TAACCACCAA AGTAACATAA AAAACCCCAC TCACCAATAT CTCCATATAC CCCCATTTTC 9695 .......... .......... .......... .......... .......... .......... 202 TTGACTTTTT TGAGTGTAGA TACACATACG TTTTTCTTTT AATTATATAT CCACTTGACA 9635 .......... .......... .......... .......... .......... .......... 202 CATGACATAT TTTTTTATAA TAATGGCGTG GAGTTAAAAA GTTTACGTAA TGTGAATTTA 9575 .......... .......... .......... .......... .......... .......... 202 AATTATTAAG TTAAGTTTTA AGAAAAAAAA GAGTGAAATT ATTTGAACAT ATTTTGTTAA 9515 .......... .......... .......... .......... .......... .......... 202 TGATCAGTTA TTTCAAATAA AACATGATAA ATATTTTAAA ATGAATTGAA TATTATGGTG 9455 .......... .......... .......... .......... .......... .......... 202 CTAAGGACTT TGCTTCTTAT TATCAGGAGT GATTGCATAA AAGTCACGGA ATATGCACCA 9395 .......... .......... .......... .......... .......... .......... 202 TAACGTGCTG AAAATATGCA AAGGGGCTGT GGTGGGATGT TAGTTTTCAA TTTTTAATTT 9335 .......... .......... .......... .......... .......... .......... 202 GATATATCGA GTTTGAGCCA TGAGAGTAAA TTTCTTTTCA TTATATATAA TAAGTGTTTT 9275 .......... .......... .......... .......... .......... .......... 202 GCCTTCAAAG TGAAATTTTT CGAATGCAAA TTTAAATTTA TCAAGCTCAA TACAAATGTT 9215 .......... .......... .......... .......... .......... .......... 202 GAATATCAAG AGCATGATTA ATAGCGGAGT AATAATTTTC ATTAGAGGAT TTTGAAATAT 9155 .......... .......... .......... .......... .......... .......... 202 GAGAAAATAA ACACACTAAC AATTTAAAGA AAAAAAAAAT TCATTCATTA ATTAATCACT 9095 .......... .......... .......... .......... .......... .......... 202 GTATATACAT TAAAAATAAT TTTAACTATA TATAAATAAA ATTAATAATT ATCTATTTAA 9035 .......... .......... .......... .......... .......... .......... 202 AAAATTGAAT AAACCCCTTA ATTCTACGTG GCTCCACCTT AACCTTTGCA TGAAATATTC 8975 .......... .......... .......... .......... .......... .......... 202 TAAAAGCCGC CTACAAAAAA GATTTCCACC TCGACTAATT ATTATGTCCT ATAAAGATAG 8915 .......... .......... .......... .......... .......... .......... 202 CTATCCTATA TAGTAATTAT AATAGTTTAT CTTGTCCCTA CAATTTTATA TTTTTGATCT 8855 .......... .......... .......... .......... .......... .......... 202 GATTACGGTA GAATGTTATC AATACTATTT TTCATTCCTT TTTTTGTCTA AGGTTTAAGA 8795 .......... .......... .......... .......... .......... .......... 202 CTTAGATAAT TAGGAATTAA AAAGACAAAA TTAAACGATA CTCCAAATGC ACTCTTGTGT 8735 .......... .......... .......... .......... .......... .......... 202 GAGAATTTTG AACATCATGT GTAAGACAAA TTAAAGTACA ATATGTTATT GAAATCTTAG 8675 .......... .......... .......... .......... .......... .......... 202 CCACCTCAAG ATAACAAACT AAAAGAAATG TGGATAATAC AAAAGACAAG TAATGAACAA 8615 .......... .......... .......... .......... .......... .......... 202 AACTCAACCA TTTTGAACAA GAAAGAGGTG GCTACACTCA TGATGAATCT ACTTATTAAG 8555 | | | | .......... .......... .......... .......... .......... ..TCACTTGG 210 CAACTTCAAG AGTACTTGTA GGCATCTCCA ATGGGAAATT TGTTGTTTCA TTGTGAGTAG 8495 | |||||| |||||||| | |||||||| | | ||| |||| | | CCACTTCATC AGTACTTGCA GGCATCTC-A A-GGGGAATT NGGGATCAGC AC........ 260 AGCCATAAGG ACAGAACATT ATCTTGTAGT CTGTAGTCCA ACTCTGACAA GTAAAAGTAC 8435 .......... .......... .......... .......... .......... .......... 260 TAGTTGGATC GTCTTGAGGG TAACTATAGG CATCAGGACA TCTTTGTTTG AAAAATCTTG 8375 .......... .......... .......... .......... .......... .......... 260 ACAATTCAGT AGGACCACAT GGACCGTGAT TACAACAATA TTGTTGTCCT CCGAATGTTG 8315 .......... .......... .......... .......... .......... .......... 260 TACAAGGGTT GTTACATCCT CCAGGTACCC TAAGTGAACC AGGGCATTCA CCGTTTATAT 8255 .......... .......... .......... .......... .......... .......... 260 TGGCTGTGCA TTGAATTGGA TGACATTTTC CAGGGCCAGG CTTAGTTGGG CCAAAAGACA 8195 .......... .......... .......... .......... .......... .......... 260 TAGGGATGTT GAATCCATCA ATAACAGAAA TATCCCAAAA ATCTAGGTTA CCAAACTGGT 8135 .......... .......... .......... .......... .......... .......... 260 TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA TCCTTTGCAA TCCAGGACTC 8075 .......... .......... .......... .......... .......... .......... 260 CACCACAATC ACCAGTCTGG CACCAACCTC TTCCAGCACC ATCAAAGTTG CAATTAGTAC 8015 .......... .......... .......... .......... .......... .......... 260 GACCCCAAAT ACGTGCCATT TTAGTGCCAG GTGGGGCCCA AAACCACCAA CTCTGACCTC 7955 .......... .......... .......... .......... .......... .......... 260 TCTCGAGACG TCGACCACCT CCTACGGGGA CCGCTGCCGC CCAAACGGTG TAGGGGCAGT 7895 .......... .......... .......... .......... .......... .......... 260 TGTTATGGAC CTCAAATACA CCGGAACCAT AAGTGTAAGT CACAAAGGCA AGGAGAAAAA 7835 .......... .......... .......... .......... .......... .......... 260 ACACTAAACA AGTTGTCAAG TGACTCATTT TAGTATAAGA AGTTGTAGGA TATATTTGCA 7775 .......... .......... .......... .......... .......... .......... 260 TATCGAGCTA GGGGTTTATA TAGTGGTATG GCGGCTTTTT TTCACTATGG ACATTAATCA 7715 .......... .......... .......... .......... .......... .......... 260 TATAAATATT GGCACTTGTT ATAAACATAT ATAGAAAATT AAAAAAAAAA ATTGTATCCA 7655 .......... .......... .......... .......... .......... .......... 260 AAATATCTCC ACTTGAAAAA AAAAGCCGCC AATATAATAT GAGTACAGCC TATTATAAGT 7595 .......... .......... .......... .......... .......... .......... 260 AATATATTTT GTTCACTCCA GTCATATTTC ACAGTTCAAC TTTTTGCTAT TTTGAAAATT 7535 .......... .......... .......... .......... .......... .......... 260 TATGCATTAA CACATTATGA TATTTATAAT GATTAAAAAA AAAAGAGAAG ATATTTTTTA 7475 .......... .......... .......... .......... .......... .......... 260 ATTAAGTGAT ATATACGTAT TATTAGTTTT GTGTTTAACT ATATATTAAT TTTAAATTAT 7415 .......... .......... .......... .......... .......... .......... 260 TTAGTTTAGT ATATACAACA AATCGGAAAA ATGCATGGCA GGGCATGAAA CCTAAAATTG 7355 .......... .......... .......... .......... .......... .......... 260 TGGAAAATTT CCTAATTTTT TTTGAACATT TTTTCATGAG AAATTTAGTT AGTAGAGAAT 7295 .......... .......... .......... .......... .......... .......... 260 TCTCTTCATA ATTTTTATTG GTTATGTTTT CATAAATAAA ATAACTTAAA AATTTTGAAT 7235 .......... .......... .......... .......... .......... .......... 260 TACAAATTTG TAATTTTTGT TTACAGACAA TTGCCTTTTT TCCCTTGATT ATTTTTTTCC 7175 .......... .......... .......... .......... .......... .......... 260 GTCGTATATA TATAGTGGAT TTTTATATTA AATTATTTAT AGCATATTTA TCAAGTGGAC 7115 .......... .......... .......... .......... .......... .......... 260 ATAATAATTA ATTGAAAATG TGCATGCATT CTACAGTCAA AAAAGTTGAG CAAATGGGTA 7055 .......... .......... .......... .......... .......... .......... 260 GGCGTAGAGA TGAGTGGAAC CTTAAAAGTT TGAATTTTTT TTTTATTCGA TACAAGCTAT 6995 .......... .......... .......... .......... .......... .......... 260 GTAGGTCTTG TTTCACACGA GAAAAATGAA TTTTGAAATT AGTTATGAAT TTCGTTACTA 6935 .......... .......... .......... .......... .......... .......... 260 ATCTATCTCT AATATGCAAA GTTTTGAATA ATCTATCCCT AATTGGTTAC TAGATATAGA 6875 .......... .......... .......... .......... .......... .......... 260 ACTAGCAATG ATTTTTGTTA TTGATTGAAT AATTTGTTCG ATATTGATTT TTGTTTTATG 6815 .......... .......... .......... .......... .......... .......... 260 TTTCCTCCGT CCGATATTGT TTGTTATGGT TTCTATTTAT AGACTCAAAC TATAAAAACT 6755 .......... .......... .......... .......... .......... .......... 260 TTGACTAACA TTTGAAGATA CATTTTTTTA TCATATTAAT ATGAAAAGAT TGTAATTTAT 6695 .......... .......... .......... .......... .......... .......... 260 AGTACTTTTC ATATTGTTTT AGAATATTTA ATTTTTTTGG TTTAAAGTAT CGAATTAATG 6635 .......... .......... .......... .......... .......... .......... 260 TGATTTAATT TACCTTTAGA AATCAATCAA AATTGACTTT CGATAAGCGT AACATGACAA 6575 .......... .......... .......... .......... .......... .......... 260 ATATTTCTGG ACGGAGGGAG TATTGATTTT TTATCGTTGT CATCATGGTC GTCTTTGTTT 6515 .......... .......... .......... .......... .......... .......... 260 GTTGGTTCAT AATAAGATAT TCTTGAGTTT AAATGAGATG ATTGTATATT TGAGTTTAAT 6455 .......... .......... .......... .......... .......... .......... 260 TTTGGAACAT GCAAGAGTTT TTGGATTTGA TTTTGATCGG TAGATGTACT AGTACCTGCC 6395 .......... .......... .......... .......... .......... .......... 260 ACCAAAACAT CGTGAAGGAT TCAGTGAACG ACTTGAAACT TAGTAACACA AGACAATTCA 6335 .......... .......... .......... .......... .......... .......... 260 CTGAATGGTT GTTGGCTCTA CCGGAGGAGT CTGAAATCAA CAACGTGTAA CTGCTTGGGC 6275 .......... .......... .......... .......... .......... .......... 260 AGAATAAAAG AACTTAAATT GTTTTAATAG AATTTTTTAA GTAACATTGC AATTATTTAA 6215 .......... .......... .......... .......... .......... .......... 260 GCAATACGAA CGCCCAATTG TATTTTATTT TATTTTTTTA TAATAAAAGA GTTTTGGAAG 6155 .......... .......... .......... .......... .......... .......... 260 TAATGAATTT TAATACAATA TCAATATTTA AATAATGTTG AATTCTTAGC TTAGGCATTG 6095 .......... .......... .......... .......... .......... .......... 260 AATCGCAATT GAAAGTGAAA GCCCTTTTTT GCTATTTCAA GTTATGAATT CAGATACTAA 6035 .......... .......... .......... .......... .......... .......... 260 AGGATAACGT CTTTTAGAAG GAAGATATTA ATGGGGTAAG TGATTTTTAA AAGTTGACTT 5975 .......... .......... .......... .......... .......... .......... 260 TTATATAAAA TTATCTTCTT CTTTTTTCTT TTTCTTTTTT GTATATCGAC TCATTTAATT 5915 .......... .......... .......... .......... .......... .......... 260 ATCAGTTTAA CTTAATGTTC GAATCTTTAA GCTTTTTAAT TAATATTGAA TTTATTATTT 5855 .......... .......... .......... .......... .......... .......... 260 CTTTAAACTT ATAAATTCAA ATCTAAACAC TTATTAAAAT TTTAATGAAT TTTCATATAC 5795 .......... .......... .......... .......... .......... .......... 260 TATAGTATAC TTGAAAATGT TCCAAAAGCC GCCAATAAAA AAATATTTCC ATCTGTTTGA 5735 .......... .......... .......... .......... .......... .......... 260 CTTATATTAT GACATGTAAC GAGTTGTCCC TACAATTTTA TATTTTCAGA TCTAGGTACT 5675 .......... .......... .......... .......... .......... .......... 260 TTAATATATT AACTAGACTA ATTTTTTTTC ATTATAATTA AAAATTTTAA GAAAAAAACT 5615 .......... .......... .......... .......... .......... .......... 260 GTACTCCAGA TATAATTTCA ATTTAAAATT AAAATACCAT ATATAAGACA AAGCATCGAT 5555 .......... .......... .......... .......... .......... .......... 260 CATAGATTGT TATTCAGATC TTAGCCACTT CAAACAAACA AATGTAAAAG AAATGTGTAC 5495 .......... .......... .......... .......... .......... .......... 260 AAGGCAAATT AAAGACAATG TCCATCTTCA AAACAAATTT AACAAAAAAG AGATTGGCTC 5435 .......... .......... .......... .......... .......... .......... 260 AACTCAAGAT TTCTACTTAA TTAAGCCACT TCAAGAGTAT TTGTAGGAAT CTCCAATGGG 5375 .......... .......... .......... .......... .......... .......... 260 AAATTTGTTG TTTCATTGTG AGTAGAGCCA TAAGGACAAA ACATAACCTT GTAGTCTGTA 5315 | ||| | |||||||| | | |||| | |||| |||| .......... .......... .....ACCCA TTAGGACAAA AGACAACCCT ATAGTTTGTA 295 GT-CCAACTC TGACAAGTAA AAGTACTTGT TGGATCGTCT TGAGGATAAC TATAGGCATC 5256 | ||| | | ||||||| | || ||||| ||||||||| || || || | |||| ||||| CTACCACCAG GGGCAAGTAA ATGTGCTTGT AGGATCGTCT TGTGGGTAGC TATAAGCATC 355 GGGACATCTT TGTTTGAAAA ATCTTGACAA ATCGGTAGGA CCACATGGAC CTTGAGTGCA 5196 |||||||||| | ||||||| || | ||||| || ||||| |||||||||| |||| ||||| GGGACATCTT TTCTTGAAAA ATTTGGACAA CTCTGTAGGG CCACATGGAC CTTGGGTGCA 415 ACAATATTGT TGTCCTCCGA ATGTAGTACA AGGGTTGTTA CATCCTCCGG GTACCCTAAG 5136 |||||||||| |||||||| | | || ||||| |||||||||| |||||||| | ||||| |||| ACAATATTGT TGTCCTCCAA ACGTGGTACA AGGGTTGTTA CATCCTCCAG GTACCTTAAG 475 TGAACCAGGG CATTCACCGT TTATATTAGC AACACATTGA ATTGGATGAC ATTTTCCCGG 5076 | | ||| |||||||| | ||||||| || || ||| |||| |||| ||||||| GGCGCGAGGA CATTCACCAT TTATATTGGC CGTGCAATGA ATTGCGTGAC ATTTTCCTCC 535 CCCAGGGTTA GTTGGGCCGA AAGACATAGG GATGTTGAAT CCATCAATAA CAGAAATGTC 5016 | ||| || |||||| | | ||| ||| || || || ||| ||||| | | ||||||||| ACTAGGTTTT GTTGGGGCAA AAGTCATTGG AATATTAAAT CCATCGACTA AAGAAATGTC 595 CCAGAAATCT AAGTTGCTAA ATTGATTCAA AGCGTATTCA GCTAAGGTGT TTGGTGGTTT 4956 ||| |||||| |||||||||| | || | ||| ||||| || |||| ||||| |||| ||||| CCAAAAATCT AAGTTGCTAA ACTGGTCCAA GGCGTACTCG GCTAGGGTGT TTGGGGGTTT 655 ACCCCATCCT TTGCATTCCA AGACTCCACC ACAATCACCG GTCTGGCACC AACCTCTACC 4896 |||||||| | || | | |||||||||| ||||||||| ||||| || |||||| || GCCCCATCCG GTACACTGTA AGACTCCACC ACAATCACCA GTCTGACATG TACCTCTGCC 715 AGCACCATCA AAATTGCAAT TAGTACGACC CCAAATACGT GCCATTTTGG TGCCCGGTGG 4836 ||| ||| | || |||||| ||||||||| ||| |||||| ||||| || | | ||| || TGCAGCATTA AAGTTGCAAC CAGTACGACC CCATATACGT GCCATCTTAG TTCCCCTCGG 775 AGCCCAAAAC CACCAACTTT GACCTCTCTC GAGACGTCGG CCACCTCCTA CGGGA 4781 ||| | ||| ||| | |||| | ||||||||| ||||| |||| ||| AGCATTGATG ACCCATGTTT GGCCTCGATT GAGACGTCGA CCACCGCCTA TCGGA 830 hqPGS_C08HBa0235H18.1-_SGN-U333798- (5349 4781) ******************************************************************************** EST sequence 20 -strand 2089 n (File: SGN-U315404-) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGGG GGAATATATA TATATATATA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA 661 TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA 721 AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA 781 TTTTAATTCG ATTCAACGGT ATGCAAAGCA AATTTATAAA AATATTGCAG CGAAATAAGC 841 AGCGATTTAT ACGATTGTGC ATTACACAAT CGCAGTGAAT GAAGATAGCG AATTATACAA 901 TTGCAGCGAA ATAGGCCATC AAATTATACA ATTTAGGCCA GCGAATTATA CAATTGTATA 961 TGTATAGCGA ATTATACAGT TTTATGTTTG CTATGGAGCG CAATTATGCA AACTTTGTTA 1021 TAACATACAA ATATGAATTT TTTATTTGCT ATACGTGAAA GTTGCCCTTA ATTAAATGCT 1081 CCACAGTCTA TACGAATATT TCCATTCTTA CCCGTCTTCA CACCAACTCG GCCCAATTTA 1141 GTCATCGCAT TAACAAATGC GGTTTCAAAA ACTTTAAAAT TACTGGCCCA CAAATTAACA 1201 GTACCTTTAG ACCTTTGGTC TGTGAACAAA ACTTGATCTG ATGTGAATAG GCCCATTCCG 1261 TTTTGCAAGT TTTGGAAATA CACATTGTCA AAAGCCCTAG GTGTTATTGG GTCCATGTTG 1321 ATGGCTATTC TTGGGTCCAC ATTTTTCGGA CACATTTGTT CTAATTGGGC TGCATACGTC 1381 TTGTTGAGAC TTGGATCCAC TGGGTTTTTA GGGTTAAAGT TGAAAATTCG GTTCGAGAAT 1441 TGGTCGCAGT GAGAAAATCC AACAGTATGG GCCGCAGATA AGGCAATCAT ATCAGCCTGA 1501 TTTAAACCAT GAGAGGCAAA CATTGTATTG AGTTGATCCA AATTGAAAGT AGGTTTAGGC 1561 AACTTTCCCC CTACATTTGT AGATTTTGAT GTCAAACCAT CTAATCTCCC CAATTCCACT 1621 GCATACCCCG GTCCACCGGA TAGTTGAATA ACATCTCGAG TGGCTAAGGC AAGAATATCA 1681 GCACAAGAAA CTTTATTTTT ACAACTTGGG ATCGCATCAA CTGCGGCTTT TGCTTTGATA 1741 ACTGTGTCAA ATCCATCTCC AGCCAATGAA AGATTATCTG GGTGATCTTT TTCTGCTGTG 1801 TTCCCTGCCG TTGATGCTAT TATCACCGAT GCATCACAAC CCTCAACAAA GCAATCATGG 1861 AAGAAAAGAC GAAGAACAGC CGGAATTGTG ACAAACGTTT GTTTGAATTT CTGGTTAACA 1921 ACATTACGCA CAATGGATTC AACATTAGGA CAAGTTTGGG CATAAAAATT GGTTTTGAGT 1981 TGAGCATCTA CCAAGTTTGG CATGAAAATA CTAACACAAG AAATTGACAA AAATGATGTA 2041 ATAAAAACTT GTAAATAACC CATATTTTTT TCTATATATA ATCAAAAAT Predicted gene structure (within gDNA segment 14395 to 1): Exon 1 10420 9885 ( 536 n); cDNA 457 979 ( 523 n); score: 0.776 Intron 1 9884 7411 (2474 n); Pd: 0.000 (s: 0.70), Pa: 0.935 (s: 0) Exon 2 7410 7373 ( 38 n); cDNA 980 1017 ( 38 n); score: 0.500 Intron 2 7372 7243 ( 130 n); Pd: 0.569 (s: 0), Pa: 0.000 (s: 0) Exon 3 7242 7211 ( 32 n); cDNA 1018 1049 ( 32 n); score: 0.719 Intron 3 7210 5790 (1421 n); Pd: 0.000 (s: 0), Pa: 0.635 (s: 0) Exon 4 5789 5777 ( 13 n); cDNA 1050 1062 ( 13 n); score: 0.846 Intron 4 5776 1776 (4001 n); Pd: 0.000 (s: 0), Pa: 0.998 (s: 0) Exon 5 1775 1751 ( 25 n); cDNA 1063 1086 ( 24 n); score: 0.600 PPA cDNA 19 1 MATCH C08HBa0235H18.1- SGN-U315404- 0.776 644 0.308 C PGS_C08HBa0235H18.1-_SGN-U315404- (10420 9885,7410 7373,7242 7211,5789 5777,1775 1751) Alignment (genomic DNA sequence = upper lines): TCGCCTCTCT CTCTTTATAC ACAAAAGTGT ATAAATTGTG TTTCTGTTTT GTAT-AAGCG 10362 |||||| ||| | || ||||| ||| |||||| ||||||| || ||||| |||| |||| ||||| TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 516 AGAGAAAACT GTATATACAC ATGCAAAAAC ATATATCTTC GTGTTATACA CTTAATTATA 10302 |||||||| | |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 576 CAATTTACAA ATATTTTACT TCAATTCAAT TGTAGACAAA TGCAAATTTT ATACAAATAT 10242 ||| |||||| | |||||||| |||| | || || ||| || ||| | || | || CAAATTACAA ACATTTTACT TCAAAT--AT TGCAGA-GAA ---AAAGGCC A-AC-GA-AT 627 TGCAGCGAAA AAGGCGAACG AATTATACAA TTGCAGTGAA ATACAATTTT CTCTTGCTTT 10182 | | | || | | ||||||| || |||||||||| |||||||||| |||| |||| T--A---TAC AA-TTG--TG AATTATATAA TTGCAGTGAA ATACAATTTT CTCTAACTTT 679 ATACAACAGA AGTGTATAAA TTGTGTTTAT GTTTTTGTAT AAAGCGAGAG AAAAACATAT 10122 |||||||||| |||||||| | |||||||| | |||||||||| ||||||||| |||||||||| ATACAACAGA AGTGTATATA TTGTGTTTTT GTTTTTGTAT AAAGCGAGAC AAAAACATAT 739 ATTTTTTTCC TATACACTTA TAATTATGCA ATATACATAC ATTTTACTTC GATTCAATTG 10062 || || || | ||||||||| |||||||||| |||||||||| |||||| ||| ||||||| | ATATTCTTGC CATACACTTA TAATTATGCA ATATACATAC ATTTTAATTC GATTCAACGG 799 TATGCAAAAT AAATTTTATA CAAATATTGC A--G-----A G-A---A-TT ATAC-AATAT 10015 |||||||| ||| |||||| ||||||||| | | | | | | || |||| | | | TATGCAAAGC AAA-TTTATA AAAATATTGC AGCGAAATAA GCAGCGATTT ATACGATTGT 858 GCATTATACA ATTGCAGTGA AATATGATAG CGAATTATAC AATTGCGGCG AAATAGGCCA 9955 |||||| ||| || ||||||| | | ||||| |||||||||| |||||| ||| |||||||||| GCATTACACA ATCGCAGTGA ATGAAGATAG CGAATTATAC AATTGCAGCG AAATAGGCCA 918 GCAAATTATA CAATTGTATA TTATAGTGAA TTATACAGTT TTATGTTTGC TATGGAGCGT 9895 ||||||||| ||| | | || || ||| ||||||| || || | || ||| |||| TCAAATTATA CAA-T-T-TA GGCCAGCGAA TTATACAATT GTA--TATG- TAT--AGCG- 969 AATTATACAA ATTTTGCTAT AACACACAAA TATAAATTTT TTATTTGCTA TATGCGAAAG 9835 ||||||||| AATTATACAG .......... .......... .......... .......... .......... 979 TTGTCCTAAA ACAATTAACA ACATTACTCT TGAAAATAAT ATTCTTTTGT CAATATAGTA 9775 .......... .......... .......... .......... .......... .......... 979 AGTAATGATG AATAATTATT TAACCACCAA AGTAACATAA AAAACCCCAC TCACCAATAT 9715 .......... .......... .......... .......... .......... .......... 979 CTCCATATAC CCCCATTTTC TTGACTTTTT TGAGTGTAGA TACACATACG TTTTTCTTTT 9655 .......... .......... .......... .......... .......... .......... 979 AATTATATAT CCACTTGACA CATGACATAT TTTTTTATAA TAATGGCGTG GAGTTAAAAA 9595 .......... .......... .......... .......... .......... .......... 979 GTTTACGTAA TGTGAATTTA AATTATTAAG TTAAGTTTTA AGAAAAAAAA GAGTGAAATT 9535 .......... .......... .......... .......... .......... .......... 979 ATTTGAACAT ATTTTGTTAA TGATCAGTTA TTTCAAATAA AACATGATAA ATATTTTAAA 9475 .......... .......... .......... .......... .......... .......... 979 ATGAATTGAA TATTATGGTG CTAAGGACTT TGCTTCTTAT TATCAGGAGT GATTGCATAA 9415 .......... .......... .......... .......... .......... .......... 979 AAGTCACGGA ATATGCACCA TAACGTGCTG AAAATATGCA AAGGGGCTGT GGTGGGATGT 9355 .......... .......... .......... .......... .......... .......... 979 TAGTTTTCAA TTTTTAATTT GATATATCGA GTTTGAGCCA TGAGAGTAAA TTTCTTTTCA 9295 .......... .......... .......... .......... .......... .......... 979 TTATATATAA TAAGTGTTTT GCCTTCAAAG TGAAATTTTT CGAATGCAAA TTTAAATTTA 9235 .......... .......... .......... .......... .......... .......... 979 TCAAGCTCAA TACAAATGTT GAATATCAAG AGCATGATTA ATAGCGGAGT AATAATTTTC 9175 .......... .......... .......... .......... .......... .......... 979 ATTAGAGGAT TTTGAAATAT GAGAAAATAA ACACACTAAC AATTTAAAGA AAAAAAAAAT 9115 .......... .......... .......... .......... .......... .......... 979 TCATTCATTA ATTAATCACT GTATATACAT TAAAAATAAT TTTAACTATA TATAAATAAA 9055 .......... .......... .......... .......... .......... .......... 979 ATTAATAATT ATCTATTTAA AAAATTGAAT AAACCCCTTA ATTCTACGTG GCTCCACCTT 8995 .......... .......... .......... .......... .......... .......... 979 AACCTTTGCA TGAAATATTC TAAAAGCCGC CTACAAAAAA GATTTCCACC TCGACTAATT 8935 .......... .......... .......... .......... .......... .......... 979 ATTATGTCCT ATAAAGATAG CTATCCTATA TAGTAATTAT AATAGTTTAT CTTGTCCCTA 8875 .......... .......... .......... .......... .......... .......... 979 CAATTTTATA TTTTTGATCT GATTACGGTA GAATGTTATC AATACTATTT TTCATTCCTT 8815 .......... .......... .......... .......... .......... .......... 979 TTTTTGTCTA AGGTTTAAGA CTTAGATAAT TAGGAATTAA AAAGACAAAA TTAAACGATA 8755 .......... .......... .......... .......... .......... .......... 979 CTCCAAATGC ACTCTTGTGT GAGAATTTTG AACATCATGT GTAAGACAAA TTAAAGTACA 8695 .......... .......... .......... .......... .......... .......... 979 ATATGTTATT GAAATCTTAG CCACCTCAAG ATAACAAACT AAAAGAAATG TGGATAATAC 8635 .......... .......... .......... .......... .......... .......... 979 AAAAGACAAG TAATGAACAA AACTCAACCA TTTTGAACAA GAAAGAGGTG GCTACACTCA 8575 .......... .......... .......... .......... .......... .......... 979 TGATGAATCT ACTTATTAAG CAACTTCAAG AGTACTTGTA GGCATCTCCA ATGGGAAATT 8515 .......... .......... .......... .......... .......... .......... 979 TGTTGTTTCA TTGTGAGTAG AGCCATAAGG ACAGAACATT ATCTTGTAGT CTGTAGTCCA 8455 .......... .......... .......... .......... .......... .......... 979 ACTCTGACAA GTAAAAGTAC TAGTTGGATC GTCTTGAGGG TAACTATAGG CATCAGGACA 8395 .......... .......... .......... .......... .......... .......... 979 TCTTTGTTTG AAAAATCTTG ACAATTCAGT AGGACCACAT GGACCGTGAT TACAACAATA 8335 .......... .......... .......... .......... .......... .......... 979 TTGTTGTCCT CCGAATGTTG TACAAGGGTT GTTACATCCT CCAGGTACCC TAAGTGAACC 8275 .......... .......... .......... .......... .......... .......... 979 AGGGCATTCA CCGTTTATAT TGGCTGTGCA TTGAATTGGA TGACATTTTC CAGGGCCAGG 8215 .......... .......... .......... .......... .......... .......... 979 CTTAGTTGGG CCAAAAGACA TAGGGATGTT GAATCCATCA ATAACAGAAA TATCCCAAAA 8155 .......... .......... .......... .......... .......... .......... 979 ATCTAGGTTA CCAAACTGGT TCAAAGCGTA TTCAGCTAAG GTGTTTGGTG GTTTACCCCA 8095 .......... .......... .......... .......... .......... .......... 979 TCCTTTGCAA TCCAGGACTC CACCACAATC ACCAGTCTGG CACCAACCTC TTCCAGCACC 8035 .......... .......... .......... .......... .......... .......... 979 ATCAAAGTTG CAATTAGTAC GACCCCAAAT ACGTGCCATT TTAGTGCCAG GTGGGGCCCA 7975 .......... .......... .......... .......... .......... .......... 979 AAACCACCAA CTCTGACCTC TCTCGAGACG TCGACCACCT CCTACGGGGA CCGCTGCCGC 7915 .......... .......... .......... .......... .......... .......... 979 CCAAACGGTG TAGGGGCAGT TGTTATGGAC CTCAAATACA CCGGAACCAT AAGTGTAAGT 7855 .......... .......... .......... .......... .......... .......... 979 CACAAAGGCA AGGAGAAAAA ACACTAAACA AGTTGTCAAG TGACTCATTT TAGTATAAGA 7795 .......... .......... .......... .......... .......... .......... 979 AGTTGTAGGA TATATTTGCA TATCGAGCTA GGGGTTTATA TAGTGGTATG GCGGCTTTTT 7735 .......... .......... .......... .......... .......... .......... 979 TTCACTATGG ACATTAATCA TATAAATATT GGCACTTGTT ATAAACATAT ATAGAAAATT 7675 .......... .......... .......... .......... .......... .......... 979 AAAAAAAAAA ATTGTATCCA AAATATCTCC ACTTGAAAAA AAAAGCCGCC AATATAATAT 7615 .......... .......... .......... .......... .......... .......... 979 GAGTACAGCC TATTATAAGT AATATATTTT GTTCACTCCA GTCATATTTC ACAGTTCAAC 7555 .......... .......... .......... .......... .......... .......... 979 TTTTTGCTAT TTTGAAAATT TATGCATTAA CACATTATGA TATTTATAAT GATTAAAAAA 7495 .......... .......... .......... .......... .......... .......... 979 AAAAGAGAAG ATATTTTTTA ATTAAGTGAT ATATACGTAT TATTAGTTTT GTGTTTAACT 7435 .......... .......... .......... .......... .......... .......... 979 ATATATTAAT TTTAAATTAT TTAGTTTAGT ATATACAACA AATCGGAAAA ATGCATGGCA 7375 ||| | | | | | | || || ||||| .......... .......... ....TTTTAT GTTTGCTATG GAGCGCAATT ATGCAAACTT 1015 GGGCATGAAA CCTAAAATTG TGGAAAATTT CCTAATTTTT TTTGAACATT TTTTCATGAG 7315 | TG........ .......... .......... .......... .......... .......... 1017 AAATTTAGTT AGTAGAGAAT TCTCTTCATA ATTTTTATTG GTTATGTTTT CATAAATAAA 7255 .......... .......... .......... .......... .......... .......... 1017 ATAACTTAAA AATTTTGAAT TACAAATTTG TAATTTTTGT TTACAGACAA TTGCCTTTTT 7195 || | | ||||||| || | ||||| | || | .......... ..TTATAACA TACAAATATG AATTTTTTAT TTGC...... .......... 1049 TCCCTTGATT ATTTTTTTCC GTCGTATATA TATAGTGGAT TTTTATATTA AATTATTTAT 7135 .......... .......... .......... .......... .......... .......... 1049 AGCATATTTA TCAAGTGGAC ATAATAATTA ATTGAAAATG TGCATGCATT CTACAGTCAA 7075 .......... .......... .......... .......... .......... .......... 1049 AAAAGTTGAG CAAATGGGTA GGCGTAGAGA TGAGTGGAAC CTTAAAAGTT TGAATTTTTT 7015 .......... .......... .......... .......... .......... .......... 1049 TTTTATTCGA TACAAGCTAT GTAGGTCTTG TTTCACACGA GAAAAATGAA TTTTGAAATT 6955 .......... .......... .......... .......... .......... .......... 1049 AGTTATGAAT TTCGTTACTA ATCTATCTCT AATATGCAAA GTTTTGAATA ATCTATCCCT 6895 .......... .......... .......... .......... .......... .......... 1049 AATTGGTTAC TAGATATAGA ACTAGCAATG ATTTTTGTTA TTGATTGAAT AATTTGTTCG 6835 .......... .......... .......... .......... .......... .......... 1049 ATATTGATTT TTGTTTTATG TTTCCTCCGT CCGATATTGT TTGTTATGGT TTCTATTTAT 6775 .......... .......... .......... .......... .......... .......... 1049 AGACTCAAAC TATAAAAACT TTGACTAACA TTTGAAGATA CATTTTTTTA TCATATTAAT 6715 .......... .......... .......... .......... .......... .......... 1049 ATGAAAAGAT TGTAATTTAT AGTACTTTTC ATATTGTTTT AGAATATTTA ATTTTTTTGG 6655 .......... .......... .......... .......... .......... .......... 1049 TTTAAAGTAT CGAATTAATG TGATTTAATT TACCTTTAGA AATCAATCAA AATTGACTTT 6595 .......... .......... .......... .......... .......... .......... 1049 CGATAAGCGT AACATGACAA ATATTTCTGG ACGGAGGGAG TATTGATTTT TTATCGTTGT 6535 .......... .......... .......... .......... .......... .......... 1049 CATCATGGTC GTCTTTGTTT GTTGGTTCAT AATAAGATAT TCTTGAGTTT AAATGAGATG 6475 .......... .......... .......... .......... .......... .......... 1049 ATTGTATATT TGAGTTTAAT TTTGGAACAT GCAAGAGTTT TTGGATTTGA TTTTGATCGG 6415 .......... .......... .......... .......... .......... .......... 1049 TAGATGTACT AGTACCTGCC ACCAAAACAT CGTGAAGGAT TCAGTGAACG ACTTGAAACT 6355 .......... .......... .......... .......... .......... .......... 1049 TAGTAACACA AGACAATTCA CTGAATGGTT GTTGGCTCTA CCGGAGGAGT CTGAAATCAA 6295 .......... .......... .......... .......... .......... .......... 1049 CAACGTGTAA CTGCTTGGGC AGAATAAAAG AACTTAAATT GTTTTAATAG AATTTTTTAA 6235 .......... .......... .......... .......... .......... .......... 1049 GTAACATTGC AATTATTTAA GCAATACGAA CGCCCAATTG TATTTTATTT TATTTTTTTA 6175 .......... .......... .......... .......... .......... .......... 1049 TAATAAAAGA GTTTTGGAAG TAATGAATTT TAATACAATA TCAATATTTA AATAATGTTG 6115 .......... .......... .......... .......... .......... .......... 1049 AATTCTTAGC TTAGGCATTG AATCGCAATT GAAAGTGAAA GCCCTTTTTT GCTATTTCAA 6055 .......... .......... .......... .......... .......... .......... 1049 GTTATGAATT CAGATACTAA AGGATAACGT CTTTTAGAAG GAAGATATTA ATGGGGTAAG 5995 .......... .......... .......... .......... .......... .......... 1049 TGATTTTTAA AAGTTGACTT TTATATAAAA TTATCTTCTT CTTTTTTCTT TTTCTTTTTT 5935 .......... .......... .......... .......... .......... .......... 1049 GTATATCGAC TCATTTAATT ATCAGTTTAA CTTAATGTTC GAATCTTTAA GCTTTTTAAT 5875 .......... .......... .......... .......... .......... .......... 1049 TAATATTGAA TTTATTATTT CTTTAAACTT ATAAATTCAA ATCTAAACAC TTATTAAAAT 5815 .......... .......... .......... .......... .......... .......... 1049 TTTAATGAAT TTTCATATAC TATAGTATAC TTGAAAATGT TCCAAAAGCC GCCAATAAAA 5755 ||||| ||||| | .......... .......... .....TATAC GTGAAAGT.. .......... .......... 1062 AAATATTTCC ATCTGTTTGA CTTATATTAT GACATGTAAC GAGTTGTCCC TACAATTTTA 5695 .......... .......... .......... .......... .......... .......... 1062 TATTTTCAGA TCTAGGTACT TTAATATATT AACTAGACTA ATTTTTTTTC ATTATAATTA 5635 .......... .......... .......... .......... .......... .......... 1062 AAAATTTTAA GAAAAAAACT GTACTCCAGA TATAATTTCA ATTTAAAATT AAAATACCAT 5575 .......... .......... .......... .......... .......... .......... 1062 ATATAAGACA AAGCATCGAT CATAGATTGT TATTCAGATC TTAGCCACTT CAAACAAACA 5515 .......... .......... .......... .......... .......... .......... 1062 AATGTAAAAG AAATGTGTAC AAGGCAAATT AAAGACAATG TCCATCTTCA AAACAAATTT 5455 .......... .......... .......... .......... .......... .......... 1062 AACAAAAAAG AGATTGGCTC AACTCAAGAT TTCTACTTAA TTAAGCCACT TCAAGAGTAT 5395 .......... .......... .......... .......... .......... .......... 1062 TTGTAGGAAT CTCCAATGGG AAATTTGTTG TTTCATTGTG AGTAGAGCCA TAAGGACAAA 5335 .......... .......... .......... .......... .......... .......... 1062 ACATAACCTT GTAGTCTGTA GTCCAACTCT GACAAGTAAA AGTACTTGTT GGATCGTCTT 5275 .......... .......... .......... .......... .......... .......... 1062 GAGGATAACT ATAGGCATCG GGACATCTTT GTTTGAAAAA TCTTGACAAA TCGGTAGGAC 5215 .......... .......... .......... .......... .......... .......... 1062 CACATGGACC TTGAGTGCAA CAATATTGTT GTCCTCCGAA TGTAGTACAA GGGTTGTTAC 5155 .......... .......... .......... .......... .......... .......... 1062 ATCCTCCGGG TACCCTAAGT GAACCAGGGC ATTCACCGTT TATATTAGCA ACACATTGAA 5095 .......... .......... .......... .......... .......... .......... 1062 TTGGATGACA TTTTCCCGGC CCAGGGTTAG TTGGGCCGAA AGACATAGGG ATGTTGAATC 5035 .......... .......... .......... .......... .......... .......... 1062 CATCAATAAC AGAAATGTCC CAGAAATCTA AGTTGCTAAA TTGATTCAAA GCGTATTCAG 4975 .......... .......... .......... .......... .......... .......... 1062 CTAAGGTGTT TGGTGGTTTA CCCCATCCTT TGCATTCCAA GACTCCACCA CAATCACCGG 4915 .......... .......... .......... .......... .......... .......... 1062 TCTGGCACCA ACCTCTACCA GCACCATCAA AATTGCAATT AGTACGACCC CAAATACGTG 4855 .......... .......... .......... .......... .......... .......... 1062 CCATTTTGGT GCCCGGTGGA GCCCAAAACC ACCAACTTTG ACCTCTCTCG AGACGTCGGC 4795 .......... .......... .......... .......... .......... .......... 1062 CACCTCCTAC GGGAGTCGCC GCTGCCCATA CGGTGTATGG ACAGTTGTTA TGGACCTCAA 4735 .......... .......... .......... .......... .......... .......... 1062 ATACACCGGA AGCATAAGTG TAAGTCACAA AGGCAAGGAG AAAGAACACT AAACAAGTTG 4675 .......... .......... .......... .......... .......... .......... 1062 TCAAATGACT CATTTTAGAA TAAAAGAAGA ATATTTGGTT TGTTGATATA TTTACACAAT 4615 .......... .......... .......... .......... .......... .......... 1062 AAATTAGGGG TTTATATAGG GGTATGGCGG CTTTTTACAC TATGGACAAT ATTATAAATA 4555 .......... .......... .......... .......... .......... .......... 1062 TATATATATA TATATGTATA TATAGACACT TGATATATTA ATAAAACCAT AATTTATATT 4495 .......... .......... .......... .......... .......... .......... 1062 TTTTTATAAA GATATAGCTA GATAGGCGGC TATAAGCATA TACAATTATT ATGTACAATG 4435 .......... .......... .......... .......... .......... .......... 1062 AACATATACA AAACCTAATA ATTTTGCTTG GTCATAATAT GTCCACTTGA GATAATAATC 4375 .......... .......... .......... .......... .......... .......... 1062 TGCACATAAT ATCCATTTTA AAAAAATAAG AAATGTATGA TATATCACTA AAAGGGAGTG 4315 .......... .......... .......... .......... .......... .......... 1062 ATATTAATAA ATCATAAAAA AAAATTTACG ATCATCACTT TTTTTACCAA ATCTATTAAA 4255 .......... .......... .......... .......... .......... .......... 1062 CGGTGAAATC GAAATTTATT TTTGAAACAA ACGGTAAATC TTATAAAGAA AAAATGTTAA 4195 .......... .......... .......... .......... .......... .......... 1062 ATCACTTTCT TAATATTCGT TTGTTAAACA AGCATTAAAT GATAGTCTAA ATATTTCTTG 4135 .......... .......... .......... .......... .......... .......... 1062 GATCACCTCA TCAACCATCA AGGCCCAAAG GGTATATATC AAATATCTCT TAAAAAGGGA 4075 .......... .......... .......... .......... .......... .......... 1062 ATTTGTTTAA ACAGAAAAGA AACAATACTT TAAAAAGATA TTTTTTACTC AAAAGTAGTA 4015 .......... .......... .......... .......... .......... .......... 1062 ATAGGATATT TTTTGACTAA AATATTCATG GTAGGGATAT GTTTGGACAA GAATATTAAT 3955 .......... .......... .......... .......... .......... .......... 1062 AGGATGGCAT TTTTGAAGAA GACATTTGTT GAATTTCACG TAGTTCAAAG ATACTTTTTT 3895 .......... .......... .......... .......... .......... .......... 1062 TTAAATCTAT TTTATTAAAA TAAAAGCTAA AAATGTCAAA ACATATTTGA ACAATCTTTT 3835 .......... .......... .......... .......... .......... .......... 1062 TTTTTTAATA TCATATTTAA ATTATTGAAA ATGTATAAAA CATGTTCCTA AGTACTCCGA 3775 .......... .......... .......... .......... .......... .......... 1062 TTCCTTATAA AAGATATTCA GTTCGTTAGA ATAGAAGTGA AAGAGGATAT TTATGTTTGT 3715 .......... .......... .......... .......... .......... .......... 1062 CGTGTTCTTT ATATGGACAT CCGAGGCCAG GGGTCCATTC TCTTGACCTG TACTGATGAG 3655 .......... .......... .......... .......... .......... .......... 1062 AATTTGACTG CACGAGAAAT TGAACAAAAA GCTGCTGAAT TAGCCTTTTT TCAGTCACAA 3595 .......... .......... .......... .......... .......... .......... 1062 AAACGAATAA TTGAAACCTA AAATCTTAAA ATGAAGAAGA TTCTATTGAT TCATTTCTAC 3535 .......... .......... .......... .......... .......... .......... 1062 AATATTACCA CTCATTAATT TGAAGAAAAA AAAACACAAT TCAATTCTAA CCAGACCAAA 3475 .......... .......... .......... .......... .......... .......... 1062 TGCACACTCC GACGCATTTG ATCCAAAAAA AAAAATAATC CACGTGGCTT TTTTTTCGCC 3415 .......... .......... .......... .......... .......... .......... 1062 AACGCAATCT AACATAATCA AATGTGTGTA TACACGTAAT ACACACGACA TCACATATTA 3355 .......... .......... .......... .......... .......... .......... 1062 CTTGAAGTAT ATTTCTCAAA CTTATTATTA TTAGTTTAAA TATGTTTTTC ATACTCGAAA 3295 .......... .......... .......... .......... .......... .......... 1062 TAATTTAGGT GCGTAAAATG TGATTTTCTT TTTTGCCTTT TTTGGTCTAA AATGTGATTT 3235 .......... .......... .......... .......... .......... .......... 1062 TCGCCTAAAC CGTCCGGTTC ACTTTACACT CACCGGTCTA ACCCCACTTT AAACCGGTCT 3175 .......... .......... .......... .......... .......... .......... 1062 TTTGTTCACA TATAAATACA CATCAGCTCA ACATATTCTT CATCGAAACA AAAAAAAAAA 3115 .......... .......... .......... .......... .......... .......... 1062 AAAAGAAAAC GATCTCTGTC CGAAAATTCG TGCGAGAATC TGTTTTTTTT TCCTGGGAAT 3055 .......... .......... .......... .......... .......... .......... 1062 CTGCTAAGAG TTTGATTGAA AATGGTACGA GGAAAACTTG TAGTTCAACT TGTTGGAGCT 2995 .......... .......... .......... .......... .......... .......... 1062 AAAGGCCTTG AAAACACTGA TTTTCTCAGT AAGTTTTTTG TTTTTTTTTC TAATTTATTT 2935 .......... .......... .......... .......... .......... .......... 1062 GTTTTGATCT GATCAGATTA ATGTATAGAT CTCTTTTTTC TTTCGATTAC ATTTGATGTT 2875 .......... .......... .......... .......... .......... .......... 1062 TTCTTAATCA ACCTAATTTT CGATTGTTAC TTATGTGAAT TAGAGGTTGA TCTACATGTA 2815 .......... .......... .......... .......... .......... .......... 1062 ATTTATGTGT TCACACAACA CCTGTTTGAA TGTGCGTTTT ATTTAGGAAA ATAGAGAATT 2755 .......... .......... .......... .......... .......... .......... 1062 ATTTGAAGAT CGGATCAAAT TTTCATGATC AAACAGATAT TTGTCAAAAT TCATGGCCAA 2695 .......... .......... .......... .......... .......... .......... 1062 ACCTTATCAA TGTATATTAA TTTGACTTCG TGGTAAACTT TAAATTTTGA ATCAAAGTAT 2635 .......... .......... .......... .......... .......... .......... 1062 GTGAAGTTGA CATTTAGGTC TATGCCTAGT CAAACGATGT CAAATAAAAT AGAATCGAGG 2575 .......... .......... .......... .......... .......... .......... 1062 AATATGAATC AAAAATCGAT AATCATCTTG GCTAATTTGA TTGATACTCT GTATTTTATT 2515 .......... .......... .......... .......... .......... .......... 1062 TTATTTTTTA ATTTAAAAAA TGTTATTTTG TGTGATACAG ATGATATGGA TCCATATGTG 2455 .......... .......... .......... .......... .......... .......... 1062 ATCTTAACTT ATAGATCTCA GGAGAAAAAG AGTACTGTTG CATCAGGTAC ATTTGTTAAT 2395 .......... .......... .......... .......... .......... .......... 1062 AATCTTTGGT TAATTATTAC TTAGTTATTA GTTACCTATG TTTTTTTTAA GAAAAATGAA 2335 .......... .......... .......... .......... .......... .......... 1062 ATGAAGTTTG ATCAATCGAT ATTTATAATG TTAAATTTTC ATAGGGAAGG GATGTGAACC 2275 .......... .......... .......... .......... .......... .......... 1062 AGAATGGAAT GAAACATTTG TTTTCTCCAT TTCTGAGGAT GCTGAAGAAC TCTTCTTGAA 2215 .......... .......... .......... .......... .......... .......... 1062 GATAATGGAC AGTGATTCTA TCGGCGAGGA CGATATTGTT GGGGAAGCTA AGTAAGTATA 2155 .......... .......... .......... .......... .......... .......... 1062 TCTAATTAGA GGCGAATCTA AGATTATACG TATTTTCTCT ATATTAACAT AGTTTGAGTT 2095 .......... .......... .......... .......... .......... .......... 1062 TGATAGTACA TGCATCCATG ACTTGTATAT GTTGAGATAA ATAGACGTAT ATGACTTTAG 2035 .......... .......... .......... .......... .......... .......... 1062 ATAAGAAGAC GTGGAGGTCG AAAATTAGGG TAGAAGGTTA GTAGTTAGTG AGCCTGAGTG 1975 .......... .......... .......... .......... .......... .......... 1062 TTGTTGCACT TGTTATTGGA GAGGAAGAGG GCTAGCCTAG TCTCTACTTC TCCTTTTTAG 1915 .......... .......... .......... .......... .......... .......... 1062 TAGTAGTATT TTGTATATCG CGTAGTTTCC TTTCTTTAAT GATTATTACA ATCAGTTGCT 1855 .......... .......... .......... .......... .......... .......... 1062 TCATTTGATT TGTATCTTGC TATTTTGTCG TTTTATTTAC TTGCACCATG CTTTTTCTTT 1795 .......... .......... .......... .......... .......... .......... 1062 TCTTTTCTTT TGAGTTCAGG GTCCTTCGTG AACAACCTGC AAAG 1751 | |||| | || | || | | || .......... .........T GCCCTTAATT AA-ATGCTCC ACAG 1086 hqPGS_C08HBa0235H18.1-_SGN-U315404- (10420 9885,7410 7373,7242 7211) ******************************************************************************** EST sequence 50 -strand 892 n (File: SGN-U333798-) 1 ATAGTTGGTA CGNCAGGGTT TCCCAGTCAC GACGTGTTAA ACGACGCCCA GTGATGTAAT 61 ACGACTCACT ATAGGCGAAA TGGGTACCGG CCCCCCCTCG AGTTTTTTTT TTTTTTTTTT 121 TTTAAAAAAC TGAGCTATAA AGATTTTCAT TACGGTAGAG ATCAGTTGAC TAATGAGGCG 181 ATTAAAATGA GAACTNNCAA TTTCACTTGG CCACTTCATC AGTACTTGCA GGCATCTCAA 241 GGGGAATTNG GGATCAGCAC ACCCATTAGG ACAAAAGACA ACCCTATAGT TTGTACTACC 301 ACCAGGGGCA AGTAAATGTG CTTGTAGGAT CGTCTTGTGG GTAGCTATAA GCATCGGGAC 361 ATCTTTTCTT GAAAAATTTG GACAACTCTG TAGGGCCACA TGGACCTTGG GTGCAACAAT 421 ATTGTTGTCC TCCAAACGTG GTACAAGGGT TGTTACATCC TCCAGGTACC TTAAGGGCGC 481 GAGGACATTC ACCATTTATA TTGGCCGTGC AATGAATTGC GTGACATTTT CCTCCACTAG 541 GTTTTGTTGG GGCAAAAGTC ATTGGAATAT TAAATCCATC GACTAAAGAA ATGTCCCAAA 601 AATCTAAGTT GCTAAACTGG TCCAAGGCGT ACTCGGCTAG GGTGTTTGGG GGTTTGCCCC 661 ATCCGGTACA CTGTAAGACT CCACCACAAT CACCAGTCTG ACATGTACCT CTGCCTGCAG 721 CATTAAAGTT GCAACCAGTA CGACCCCATA TACGTGCCAT CTTAGTTCCC CTCGGAGCAT 781 TGATGACCCA TGTTTGGCCT CGATTGAGAC GTCGACCACC GCCTATCGGA GCCTGCAGCC 841 CGGGGGATCC ACTAGTTCTA GAGCGGCCGC CACCGCGGTG AGCTCCAGCT TT Predicted gene structure (within gDNA segment 6014 to 13254): Exon 1 7251 7285 ( 35 n); cDNA 111 145 ( 35 n); score: 0.714 Intron 1 7286 11309 (4024 n); Pd: 0.000 (s: 0), Pa: 0.648 (s: 0.60) Exon 2 11310 11997 ( 688 n); cDNA 146 829 ( 684 n); score: 0.848 MATCH C08HBa0235H18.1+ SGN-U333798- 0.848 723 0.811 C PGS_C08HBa0235H18.1+_SGN-U333798- (7251 7285,11310 11997) Alignment (genomic DNA sequence = upper lines): TTATTTTATT TATGAAAACA TAACCAATAA AAATTATGAA GAGAATTCTC TACTAACTAA 7310 || |||| || | | |||| | | | |||| | ||| TTTTTTTTTT TTTAAAAAAC TGAGCTATAA AGATT..... .......... .......... 145 ATTTCTCATG AAAAAATGTT CAAAAAAAAT TAGGAAATTT TCCACAATTT TAGGTTTCAT 7370 .......... .......... .......... .......... .......... .......... 145 GCCCTGCCAT GCATTTTTCC GATTTGTTGT ATATACTAAA CTAAATAATT TAAAATTAAT 7430 .......... .......... .......... .......... .......... .......... 145 ATATAGTTAA ACACAAAACT AATAATACGT ATATATCACT TAATTAAAAA ATATCTTCTC 7490 .......... .......... .......... .......... .......... .......... 145 TTTTTTTTTT AATCATTATA AATATCATAA TGTGTTAATG CATAAATTTT CAAAATAGCA 7550 .......... .......... .......... .......... .......... .......... 145 AAAAGTTGAA CTGTGAAATA TGACTGGAGT GAACAAAATA TATTACTTAT AATAGGCTGT 7610 .......... .......... .......... .......... .......... .......... 145 ACTCATATTA TATTGGCGGC TTTTTTTTTC AAGTGGAGAT ATTTTGGATA CAATTTTTTT 7670 .......... .......... .......... .......... .......... .......... 145 TTTTAATTTT CTATATATGT TTATAACAAG TGCCAATATT TATATGATTA ATGTCCATAG 7730 .......... .......... .......... .......... .......... .......... 145 TGAAAAAAAG CCGCCATACC ACTATATAAA CCCCTAGCTC GATATGCAAA TATATCCTAC 7790 .......... .......... .......... .......... .......... .......... 145 AACTTCTTAT ACTAAAATGA GTCACTTGAC AACTTGTTTA GTGTTTTTTC TCCTTGCCTT 7850 .......... .......... .......... .......... .......... .......... 145 TGTGACTTAC ACTTATGGTT CCGGTGTATT TGAGGTCCAT AACAACTGCC CCTACACCGT 7910 .......... .......... .......... .......... .......... .......... 145 TTGGGCGGCA GCGGTCCCCG TAGGAGGTGG TCGACGTCTC GAGAGAGGTC AGAGTTGGTG 7970 .......... .......... .......... .......... .......... .......... 145 GTTTTGGGCC CCACCTGGCA CTAAAATGGC ACGTATTTGG GGTCGTACTA ATTGCAACTT 8030 .......... .......... .......... .......... .......... .......... 145 TGATGGTGCT GGAAGAGGTT GGTGCCAGAC TGGTGATTGT GGTGGAGTCC TGGATTGCAA 8090 .......... .......... .......... .......... .......... .......... 145 AGGATGGGGT AAACCACCAA ACACCTTAGC TGAATACGCT TTGAACCAGT TTGGTAACCT 8150 .......... .......... .......... .......... .......... .......... 145 AGATTTTTGG GATATTTCTG TTATTGATGG ATTCAACATC CCTATGTCTT TTGGCCCAAC 8210 .......... .......... .......... .......... .......... .......... 145 TAAGCCTGGC CCTGGAAAAT GTCATCCAAT TCAATGCACA GCCAATATAA ACGGTGAATG 8270 .......... .......... .......... .......... .......... .......... 145 CCCTGGTTCA CTTAGGGTAC CTGGAGGATG TAACAACCCT TGTACAACAT TCGGAGGACA 8330 .......... .......... .......... .......... .......... .......... 145 ACAATATTGT TGTAATCACG GTCCATGTGG TCCTACTGAA TTGTCAAGAT TTTTCAAACA 8390 .......... .......... .......... .......... .......... .......... 145 AAGATGTCCT GATGCCTATA GTTACCCTCA AGACGATCCA ACTAGTACTT TTACTTGTCA 8450 .......... .......... .......... .......... .......... .......... 145 GAGTTGGACT ACAGACTACA AGATAATGTT CTGTCCTTAT GGCTCTACTC ACAATGAAAC 8510 .......... .......... .......... .......... .......... .......... 145 AACAAATTTC CCATTGGAGA TGCCTACAAG TACTCTTGAA GTTGCTTAAT AAGTAGATTC 8570 .......... .......... .......... .......... .......... .......... 145 ATCATGAGTG TAGCCACCTC TTTCTTGTTC AAAATGGTTG AGTTTTGTTC ATTACTTGTC 8630 .......... .......... .......... .......... .......... .......... 145 TTTTGTATTA TCCACATTTC TTTTAGTTTG TTATCTTGAG GTGGCTAAGA TTTCAATAAC 8690 .......... .......... .......... .......... .......... .......... 145 ATATTGTACT TTAATTTGTC TTACACATGA TGTTCAAAAT TCTCACACAA GAGTGCATTT 8750 .......... .......... .......... .......... .......... .......... 145 GGAGTATCGT TTAATTTTGT CTTTTTAATT CCTAATTATC TAAGTCTTAA ACCTTAGACA 8810 .......... .......... .......... .......... .......... .......... 145 AAAAAAGGAA TGAAAAATAG TATTGATAAC ATTCTACCGT AATCAGATCA AAAATATAAA 8870 .......... .......... .......... .......... .......... .......... 145 ATTGTAGGGA CAAGATAAAC TATTATAATT ACTATATAGG ATAGCTATCT TTATAGGACA 8930 .......... .......... .......... .......... .......... .......... 145 TAATAATTAG TCGAGGTGGA AATCTTTTTT GTAGGCGGCT TTTAGAATAT TTCATGCAAA 8990 .......... .......... .......... .......... .......... .......... 145 GGTTAAGGTG GAGCCACGTA GAATTAAGGG GTTTATTCAA TTTTTTAAAT AGATAATTAT 9050 .......... .......... .......... .......... .......... .......... 145 TAATTTTATT TATATATAGT TAAAATTATT TTTAATGTAT ATACAGTGAT TAATTAATGA 9110 .......... .......... .......... .......... .......... .......... 145 ATGAATTTTT TTTTTCTTTA AATTGTTAGT GTGTTTATTT TCTCATATTT CAAAATCCTC 9170 .......... .......... .......... .......... .......... .......... 145 TAATGAAAAT TATTACTCCG CTATTAATCA TGCTCTTGAT ATTCAACATT TGTATTGAGC 9230 .......... .......... .......... .......... .......... .......... 145 TTGATAAATT TAAATTTGCA TTCGAAAAAT TTCACTTTGA AGGCAAAACA CTTATTATAT 9290 .......... .......... .......... .......... .......... .......... 145 ATAATGAAAA GAAATTTACT CTCATGGCTC AAACTCGATA TATCAAATTA AAAATTGAAA 9350 .......... .......... .......... .......... .......... .......... 145 ACTAACATCC CACCACAGCC CCTTTGCATA TTTTCAGCAC GTTATGGTGC ATATTCCGTG 9410 .......... .......... .......... .......... .......... .......... 145 ACTTTTATGC AATCACTCCT GATAATAAGA AGCAAAGTCC TTAGCACCAT AATATTCAAT 9470 .......... .......... .......... .......... .......... .......... 145 TCATTTTAAA ATATTTATCA TGTTTTATTT GAAATAACTG ATCATTAACA AAATATGTTC 9530 .......... .......... .......... .......... .......... .......... 145 AAATAATTTC ACTCTTTTTT TTCTTAAAAC TTAACTTAAT AATTTAAATT CACATTACGT 9590 .......... .......... .......... .......... .......... .......... 145 AAACTTTTTA ACTCCACGCC ATTATTATAA AAAAATATGT CATGTGTCAA GTGGATATAT 9650 .......... .......... .......... .......... .......... .......... 145 AATTAAAAGA AAAACGTATG TGTATCTACA CTCAAAAAAG TCAAGAAAAT GGGGGTATAT 9710 .......... .......... .......... .......... .......... .......... 145 GGAGATATTG GTGAGTGGGG TTTTTTATGT TACTTTGGTG GTTAAATAAT TATTCATCAT 9770 .......... .......... .......... .......... .......... .......... 145 TACTTACTAT ATTGACAAAA GAATATTATT TTCAAGAGTA ATGTTGTTAA TTGTTTTAGG 9830 .......... .......... .......... .......... .......... .......... 145 ACAACTTTCG CATATAGCAA ATAAAAAATT TATATTTGTG TGTTATAGCA AAATTTGTAT 9890 .......... .......... .......... .......... .......... .......... 145 AATTACGCTC CATAGCAAAC ATAAAACTGT ATAATTCACT ATAATATACA ATTGTATAAT 9950 .......... .......... .......... .......... .......... .......... 145 TTGCTGGCCT ATTTCGCCGC AATTGTATAA TTCGCTATCA TATTTCACTG CAATTGTATA 10010 .......... .......... .......... .......... .......... .......... 145 ATGCATATTG TATAATTCTC TGCAATATTT GTATAAAATT TATTTTGCAT ACAATTGAAT 10070 .......... .......... .......... .......... .......... .......... 145 CGAAGTAAAA TGTATGTATA TTGCATAATT ATAAGTGTAT AGGAAAAAAA TATATGTTTT 10130 .......... .......... .......... .......... .......... .......... 145 TCTCTCGCTT TATACAAAAA CATAAACACA ATTTATACAC TTCTGTTGTA TAAAGCAAGA 10190 .......... .......... .......... .......... .......... .......... 145 GAAAATTGTA TTTCACTGCA ATTGTATAAT TCGTTCGCCT TTTTCGCTGC AATATTTGTA 10250 .......... .......... .......... .......... .......... .......... 145 TAAAATTTGC ATTTGTCTAC AATTGAATTG AAGTAAAATA TTTGTAAATT GTATAATTAA 10310 .......... .......... .......... .......... .......... .......... 145 GTGTATAACA CGAAGATATA TGTTTTTGCA TGTGTATATA CAGTTTTCTC TCGCTTATAC 10370 .......... .......... .......... .......... .......... .......... 145 AAAACAGAAA CACAATTTAT ACACTTTTGT GTATAAAGAG AGAGAGGCGA CTGACAAACT 10430 .......... .......... .......... .......... .......... .......... 145 TTGGCTAACG TTTGCTATGG TGCACAATTA AATCAAATCA TAGCTACTCC ATTTATTTTA 10490 .......... .......... .......... .......... .......... .......... 145 GGTTATTAGT TTGCTATTAT ATACAATTAT CCCATTATTT TATCCCAATA CAATATTTAG 10550 .......... .......... .......... .......... .......... .......... 145 TCATTTCATT CCATCAATTT CGGTGAAGTT CAAATCAATC GTTGTTTTAA AAGAGATTAG 10610 .......... .......... .......... .......... .......... .......... 145 TATTGATAAA GTCACGTTCT ACAATATTTT TTATTTTTTT GAGTGGCGAT AAATTATTAA 10670 .......... .......... .......... .......... .......... .......... 145 TATTATTTTT GACAATTCAT TTTATTCTTT AGAGTGCGAT ATAATCAACT TGTTAATCTA 10730 .......... .......... .......... .......... .......... .......... 145 TTATATCAAG TTAACAAGTT ATTAGAATCT TTTTCACTCT TAATCCTCTA AAATATGTAA 10790 .......... .......... .......... .......... .......... .......... 145 AACATGTTAA TGATAAAAAA AAAATAGTGA ATTTTCTACG TTTATAAATA TAATTTTTTT 10850 .......... .......... .......... .......... .......... .......... 145 TAATAAAAAT ATAAATTTTG CTCAATTTAA TCTTTTGGCA TTGTGTCAAG TAGCACGTGC 10910 .......... .......... .......... .......... .......... .......... 145 AGCTAACATC ATTTAGCTTG AAAATGTTCT AAGAGCCGCC TATAAACAAA TATTTCCATC 10970 .......... .......... .......... .......... .......... .......... 145 TACTTTTGAC TTTGCCCTAA AATTGTGGAT AATAATTTCT AATAAAATGG GATTATTTTA 11030 .......... .......... .......... .......... .......... .......... 145 TTTTATATTA TTTTAAGGTA CTAGTTACTT TTGAGATTAA TTTATTTTAT TTTTATATTT 11090 .......... .......... .......... .......... .......... .......... 145 TGTGATGGAA CTTTTATCAT ATAAAAAAAT GAGATAAAAT AATCTCGTGA GATGTTCTTA 11150 .......... .......... .......... .......... .......... .......... 145 TTTATCTTAT CCAGTATATT ATAGTTTTTA TGTTTTTAAA CTGACTGATA TTATTCTTTT 11210 .......... .......... .......... .......... .......... .......... 145 ATTTGACAAG TTAATACGTA AATAACAAAA TATACATAAA ATAATATTCG AAACAACATA 11270 .......... .......... .......... .......... .......... .......... 145 TTTGTGATGA TGTGACTTTT ATTCATGTAA TTATATTAGG TTTATTACAA GCCAATTATA 11330 || ||||| | | | | .......... .......... .......... .........- TTCATTAC-- G-GTA-GAGA 161 TAACTCGACT ACTTCAAGCA ATTTAAAAGA AAGTGACTCA ATTTTACTTA GCCTCTTCAT 11390 | | | |||| | | | || ||| ||| || | || |||| |||| ||| |||||| TCAGTTGACT A-ATGAGGCG ATTAAAATGA GA-ACTNNCA ATTTCACTTG GCCACTTCAT 219 CA---CTTGA GGGCATCTCC AAGGGGAAAT TTGGGCT-AG TAACACCATT AGGACAAAAA 11446 || |||| ||||||| | |||||| ||| | ||| | || | ||||| ||||||||| CAGTACTTGC AGGCATCT-C AAGGGG-AAT TNGGGATCAG CACACCCATT AGGACAAAAG 277 ACAACCCTAT AATTTGTACT ACCACTA-GG GCAAGTAAAT GTGCTAGTAG GATCATCTTG 11505 |||||||||| | |||||||| ||||| | || |||||||||| ||||| |||| |||| ||||| ACAACCCTAT AGTTTGTACT ACCACCAGGG GCAAGTAAAT GTGCTTGTAG GATCGTCTTG 337 TGGGTAGCTA TACGCATCAG GACATCTTTG TTTGAAAAAT CTCGACAAAT CAGTAGGGCC 11565 |||||||||| || ||||| | ||||||||| ||||||||| | ||||| | | |||||||| TGGGTAGCTA TAAGCATCGG GACATCTTTT CTTGAAAAAT TTGGACAACT CTGTAGGGCC 397 ACATGGACCT TGTGTGCAAC AATATTGTTG TCCTCCGAAC GTGGTACAAG GATTGTTACA 11625 |||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| | |||||||| ACATGGACCT TGGGTGCAAC AATATTGTTG TCCTCCAAAC GTGGTACAAG GGTTGTTACA 457 TCCTCCGGGT ACCCTAAGTG AACCAGGACA TTCACCATTT ATATTAGCCG TACAATGAAT 11685 |||||| ||| ||| |||| | | |||||| |||||||||| ||||| |||| | |||||||| TCCTCCAGGT ACCTTAAGGG CGCGAGGACA TTCACCATTT ATATTGGCCG TGCAATGAAT 517 TGCATGGCAT TTCCCTCCAC TAGGATTGGT CGGGGCGAAA GTCATTGGAA TATTAAATCC 11745 ||| || ||| || ||||||| |||| || || ||||| ||| |||||||||| |||||||||| TGCGTGACAT TTTCCTCCAC TAGGTTTTGT TGGGGCAAAA GTCATTGGAA TATTAAATCC 577 ATCGACTAAA GAAATGTCCC AGAAATCTAG GTTGCTAAAC TGGTCCAAGG CGTACTCGGC 11805 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| ATCGACTAAA GAAATGTCCC AAAAATCTAA GTTGCTAAAC TGGTCCAAGG CGTACTCGGC 637 CAGGGTGTTT GGTGGTTTGC CCCACCCGGT ACATTGCAAG ACCCCACCAC AATCACCAGT 11865 ||||||||| || ||||||| |||| ||||| ||| || ||| || ||||||| |||||||||| TAGGGTGTTT GGGGGTTTGC CCCATCCGGT ACACTGTAAG ACTCCACCAC AATCACCAGT 697 CTGACATGAA CCTCTACCAG CACCATCAAA GTTGCAATTC GTACGACCCC ATATACGTGC 11925 |||||||| | ||||| || | || ||| ||| ||||||| |||||||||| |||||||||| CTGACATGTA CCTCTGCCTG CAGCATTAAA GTTGCAACCA GTACGACCCC ATATACGTGC 757 CATCTTAGTG CCCCTCGGTG CATTGATGAC CCATGTTTGG CCTCGATCAA GACGTCGACC 11985 ||||||||| |||||||| | |||||||||| |||||||||| ||||||| | |||||||||| CATCTTAGTT CCCCTCGGAG CATTGATGAC CCATGTTTGG CCTCGATTGA GACGTCGACC 817 ACCGCCTATT GG 11997 ||||||||| || ACCGCCTATC GG 829 hqPGS_C08HBa0235H18.1+_SGN-U333798- (7251 7285,11310 11997) ******************************************************************************** EST sequence 11 -strand 968 n (File: SGN-U314099-) 1 TTTTTTTTTT TTTTTACTCC AAATGCACTC TTGTGTGAGA ATTTTGAACA TCATGTGTAA 61 GACAAATTAA AGTACAATAT GTTATTGAAA TCTTAGCCAC CTCAAGATAA CAAACTAAAA 121 GAAATGTGGA TAATACAAAA GACAAGTAAT GAACAAAACT CAACCATTTT GAACAAGAAA 181 GAGGTGGCTA CACTCATGAT GAATCTACTT ATTAAGCAAC TTCAAGAGTA CTTGTAGGCA 241 TCTCCAATGG GAAATTTGTT GTTTCATTGT GAGTAGAGCC ATAAGGACAG AACATTATCT 301 TGTAGTCTGT AGTCCAACTC TGACAAGTAA AAGTACTAGT TGGATCGTCT TGAGGGTAAC 361 TATAGGCATC AGGACATCTT TGTTTGAAAA ATCTTGACAA TTCAGTAGGA CCACATGGAC 421 CGTGATTACA ACAATATTGT TGTCCTCCGA ATGTTGTACA AGGGTTGTTA CATCCTCCAG 481 GTACCCTAAG TGAACCAGGG CATTCACCGT TTATATTGGC TGTGCATTGA ATTGGATGAC 541 ATTTTCCAGG GCCAGGCTTA GTTGGGCCAA AAGACATAGG GATGTTGAAT CCATCAATAA 601 CAGAAATATC CCAAAAATCT AGGTTACCAA ACTGGTTCAA AGCGTATTCA GCTAAGGTGT 661 TTGGTGGTTT ACCCCATCCT TTGCAATCCA GGACTCCACC ACAATCACCA GTCTGGCACC 721 AACCTCTTCC AGCACCATCA AAGTTGCAAT TAGTACGACC CCAAATACGT GCCATTTTAG 781 TGCCAGGTGG GGCCCAAAAC CACCAACTCT GACCTCTCTC GAGACGTCGA CCACCTCCTA 841 CGGGGACCGC TGCCGCCCAA ACGGTGTAGG GGCAGTTGTT ATGGACCTCA AATACACCGG 901 AACCATAAGT GTAAGTCACA AAGGCAAGGA GAAAAAACAC TAAACAAGTT GTCAAGTGAC 961 TCATTTTA Predicted gene structure (within gDNA segment 9506 to 7203): Exon 1 8753 7803 ( 951 n); cDNA 18 968 ( 951 n); score: 1.000 PPA cDNA 15 1 MATCH C08HBa0235H18.1- SGN-U314099- 1.000 951 0.982 C PGS_C08HBa0235H18.1-_SGN-U314099- (8753 7803) Alignment (genomic DNA sequence = upper lines): TCCAAATGCA CTCTTGTGTG AGAATTTTGA ACATCATGTG TAAGACAAAT TAAAGTACAA 8694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAATGCA CTCTTGTGTG AGAATTTTGA ACATCATGTG TAAGACAAAT TAAAGTACAA 77 TATGTTATTG AAATCTTAGC CACCTCAAGA TAACAAACTA AAAGAAATGT GGATAATACA 8634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTATTG AAATCTTAGC CACCTCAAGA TAACAAACTA AAAGAAATGT GGATAATACA 137 AAAGACAAGT AATGAACAAA ACTCAACCAT TTTGAACAAG AAAGAGGTGG CTACACTCAT 8574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGACAAGT AATGAACAAA ACTCAACCAT TTTGAACAAG AAAGAGGTGG CTACACTCAT 197 GATGAATCTA CTTATTAAGC AACTTCAAGA GTACTTGTAG GCATCTCCAA TGGGAAATTT 8514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAATCTA CTTATTAAGC AACTTCAAGA GTACTTGTAG GCATCTCCAA TGGGAAATTT 257 GTTGTTTCAT TGTGAGTAGA GCCATAAGGA CAGAACATTA TCTTGTAGTC TGTAGTCCAA 8454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTTCAT TGTGAGTAGA GCCATAAGGA CAGAACATTA TCTTGTAGTC TGTAGTCCAA 317 CTCTGACAAG TAAAAGTACT AGTTGGATCG TCTTGAGGGT AACTATAGGC ATCAGGACAT 8394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGACAAG TAAAAGTACT AGTTGGATCG TCTTGAGGGT AACTATAGGC ATCAGGACAT 377 CTTTGTTTGA AAAATCTTGA CAATTCAGTA GGACCACATG GACCGTGATT ACAACAATAT 8334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTTTGA AAAATCTTGA CAATTCAGTA GGACCACATG GACCGTGATT ACAACAATAT 437 TGTTGTCCTC CGAATGTTGT ACAAGGGTTG TTACATCCTC CAGGTACCCT AAGTGAACCA 8274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTCCTC CGAATGTTGT ACAAGGGTTG TTACATCCTC CAGGTACCCT AAGTGAACCA 497 GGGCATTCAC CGTTTATATT GGCTGTGCAT TGAATTGGAT GACATTTTCC AGGGCCAGGC 8214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCATTCAC CGTTTATATT GGCTGTGCAT TGAATTGGAT GACATTTTCC AGGGCCAGGC 557 TTAGTTGGGC CAAAAGACAT AGGGATGTTG AATCCATCAA TAACAGAAAT ATCCCAAAAA 8154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTGGGC CAAAAGACAT AGGGATGTTG AATCCATCAA TAACAGAAAT ATCCCAAAAA 617 TCTAGGTTAC CAAACTGGTT CAAAGCGTAT TCAGCTAAGG TGTTTGGTGG TTTACCCCAT 8094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGGTTAC CAAACTGGTT CAAAGCGTAT TCAGCTAAGG TGTTTGGTGG TTTACCCCAT 677 CCTTTGCAAT CCAGGACTCC ACCACAATCA CCAGTCTGGC ACCAACCTCT TCCAGCACCA 8034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTGCAAT CCAGGACTCC ACCACAATCA CCAGTCTGGC ACCAACCTCT TCCAGCACCA 737 TCAAAGTTGC AATTAGTACG ACCCCAAATA CGTGCCATTT TAGTGCCAGG TGGGGCCCAA 7974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGTTGC AATTAGTACG ACCCCAAATA CGTGCCATTT TAGTGCCAGG TGGGGCCCAA 797 AACCACCAAC TCTGACCTCT CTCGAGACGT CGACCACCTC CTACGGGGAC CGCTGCCGCC 7914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCAAC TCTGACCTCT CTCGAGACGT CGACCACCTC CTACGGGGAC CGCTGCCGCC 857 CAAACGGTGT AGGGGCAGTT GTTATGGACC TCAAATACAC CGGAACCATA AGTGTAAGTC 7854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACGGTGT AGGGGCAGTT GTTATGGACC TCAAATACAC CGGAACCATA AGTGTAAGTC 917 ACAAAGGCAA GGAGAAAAAA CACTAAACAA GTTGTCAAGT GACTCATTTT A 7803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ACAAAGGCAA GGAGAAAAAA CACTAAACAA GTTGTCAAGT GACTCATTTT A 968 hqPGS_C08HBa0235H18.1-_SGN-U314099- (8753 7803) ******************************************************************************** EST sequence 13 -strand 1013 n (File: SGN-U314100-) 1 TTTTTTTTTT TTTTTCAATT TAAAATTAAA ATACCATATA TAAGACAAAG CATCGATCAT 61 AGATTGTTAT TCAGATCTTA GCCACTTCAA ACAAACAAAT GTAAAAGAAA TGTGTACAAG 121 GCAAATTAAA GACAATGTCC ATCTTCAAAA CAAATTTAAC AAAAAAGAGA TTGGCTCAAC 181 TCAAGATTTC TACTTAATTA AGCCACTTCA AGAGTATTTG TAGGAATCTC CAATGGGAAA 241 TTTGTTGTTT CATTGTGAGT AGAGCCATAA GGACAAAACA TAACCTTGTA GTCTGTAGTC 301 CAACTCTGAC AAGTAAAAGT ACTTGTTGGA TCGTCTTGAG GATAACTATA GGCATCGGGA 361 CATCTTTGTT TGAAAAATCT TGACAAATCG GTAGGACCAC ATGGACCTTG AGTGCAACAA 421 TATTGTTGTC CTCCGAATGT AGTACAAGGG TTGTTACATC CTCCGGGTAC CCTAAGTGAA 481 CCAGGGCATT CACCGTTTAT ATTAGCAACA CATTGAATTG GATGACATTT TCCCGGCCCA 541 GGGTTAGTTG GGCCGAAAGA CATAGGGATG TTGAATCCAT CAATAACAGA AATGTCCCAG 601 AAATCTAAGT TGCTAAATTG ATTCAAAGCG TATTCAGCTA AGGTGTTTGG TGGTTTACCC 661 CATCCTTTGC ATTCCAAGAC TCCACCACAA TCACCGGTCT GGCACCAACC TCTACCAGCA 721 CCATCAAAAT TGCAATTAGT ACGACCCCAA ATACGTGCCA TTTTGGTGCC CGGTGGAGCC 781 CAAAACCACC AACTTTGACC TCTCTCGAGA CGTCGGCCAC CTCCTACGGG AGTCGCCGCT 841 GCCCATACGG TGTATGGACA GTTGTTATGG ACCTCAAATA CACCGGAAGC ATAAGTGTAA 901 GTCACAAAGG CAAGGAGAAA GAACACTAAA CAAGTTGTCA AATGACTCAT TTTAGAATAA 961 AAGAAGAATA TTTGGTTTGT TGATCAATTC GGCCGATTGG CCGCCAATCG CCC Predicted gene structure (within gDNA segment 11391 to 6496): Exon 1 8674 7803 ( 872 n); cDNA 82 954 ( 873 n); score: 0.890 PPA cDNA 15 1 MATCH C08HBa0235H18.1- SGN-U314100- 0.890 872 0.861 C PGS_C08HBa0235H18.1-_SGN-U314100- (8674 7803) Alignment (genomic DNA sequence = upper lines): CCACCTCAAG ATAACAAA-C TAAAAGAAAT GTGGATAATA CAAAAGACAA GTAATGAACA 8616 |||| |||| |||||| |||||||||| ||| | || |||| | | |||| || CCACTTCAAA CAAACAAATG TAAAAGAAAT GTGTACAAGG CAAATTAAAG ACAATGTCCA 141 AAACTCAACC ATTTTGAACA AGAAAGAG-G TGGCTACACT CATGATGAAT CTACTT-ATT 8558 || | | || |||| | |||||| ||||| ||| || ||| | |||||| ||| TCTTCAAAAC AAATTTAACA AAAAAGAGAT TGGCTCAACT CAAGAT--TT CTACTTAATT 199 AAGCAACTTC AAGAGTACTT GTAGGCATCT CCAATGGGAA ATTTGTTGTT TCATTGTGAG 8498 |||| ||||| ||||||| || ||||| |||| |||||||||| |||||||||| |||||||||| AAGCCACTTC AAGAGTATTT GTAGGAATCT CCAATGGGAA ATTTGTTGTT TCATTGTGAG 259 TAGAGCCATA AGGACAGAAC ATTATCTTGT AGTCTGTAGT CCAACTCTGA CAAGTAAAAG 8438 |||||||||| |||||| ||| || | ||||| |||||||||| |||||||||| |||||||||| TAGAGCCATA AGGACAAAAC ATAACCTTGT AGTCTGTAGT CCAACTCTGA CAAGTAAAAG 319 TACTAGTTGG ATCGTCTTGA GGGTAACTAT AGGCATCAGG ACATCTTTGT TTGAAAAATC 8378 |||| ||||| |||||||||| || ||||||| ||||||| || |||||||||| |||||||||| TACTTGTTGG ATCGTCTTGA GGATAACTAT AGGCATCGGG ACATCTTTGT TTGAAAAATC 379 TTGACAATTC AGTAGGACCA CATGGACCGT GATTACAACA ATATTGTTGT CCTCCGAATG 8318 ||||||| || ||||||||| |||||||| | || | ||||| |||||||||| |||||||||| TTGACAAATC GGTAGGACCA CATGGACCTT GAGTGCAACA ATATTGTTGT CCTCCGAATG 439 TTGTACAAGG GTTGTTACAT CCTCCAGGTA CCCTAAGTGA ACCAGGGCAT TCACCGTTTA 8258 | |||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TAGTACAAGG GTTGTTACAT CCTCCGGGTA CCCTAAGTGA ACCAGGGCAT TCACCGTTTA 499 TATTGGCTGT GCATTGAATT GGATGACATT TTCCAGGGCC AGGCTTAGTT GGGCCAAAAG 8198 |||| || ||||||||| |||||||||| |||| || || ||| |||||| ||||| |||| TATTAGCAAC ACATTGAATT GGATGACATT TTCCCGGCCC AGGGTTAGTT GGGCCGAAAG 559 ACATAGGGAT GTTGAATCCA TCAATAACAG AAATATCCCA AAAATCTAGG TTACCAAACT 8138 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||| | || | ||| | ACATAGGGAT GTTGAATCCA TCAATAACAG AAATGTCCCA GAAATCTAAG TTGCTAAATT 619 GGTTCAAAGC GTATTCAGCT AAGGTGTTTG GTGGTTTACC CCATCCTTTG CAATCCAGGA 8078 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||| || GATTCAAAGC GTATTCAGCT AAGGTGTTTG GTGGTTTACC CCATCCTTTG CATTCCAAGA 679 CTCCACCACA ATCACCAGTC TGGCACCAAC CTCTTCCAGC ACCATCAAAG TTGCAATTAG 8018 |||||||||| |||||| ||| |||||||||| |||| ||||| ||||||||| |||||||||| CTCCACCACA ATCACCGGTC TGGCACCAAC CTCTACCAGC ACCATCAAAA TTGCAATTAG 739 TACGACCCCA AATACGTGCC ATTTTAGTGC CAGGTGGGGC CCAAAACCAC CAACTCTGAC 7958 |||||||||| |||||||||| ||||| |||| | ||||| || |||||||||| ||||| |||| TACGACCCCA AATACGTGCC ATTTTGGTGC CCGGTGGAGC CCAAAACCAC CAACTTTGAC 799 CTCTCTCGAG ACGTCGACCA CCTCCTACGG GGACCGCTGC CGCCCAAACG GTGTAGGGGC 7898 |||||||||| |||||| ||| |||||||||| | ||| || ||||| ||| ||||| || | CTCTCTCGAG ACGTCGGCCA CCTCCTACGG GAGTCGCCGC TGCCCATACG GTGTATGGAC 859 AGTTGTTATG GACCTCAAAT ACACCGGAAC CATAAGTGTA AGTCACAAAG GCAAGGAGAA 7838 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGTTGTTATG GACCTCAAAT ACACCGGAAG CATAAGTGTA AGTCACAAAG GCAAGGAGAA 919 AAAACACTAA ACAAGTTGTC AAGTGACTCA TTTTA 7803 | |||||||| |||||||||| || ||||||| ||||| AGAACACTAA ACAAGTTGTC AAATGACTCA TTTTA 954 hqPGS_C08HBa0235H18.1-_SGN-U314100- (8674 7803) ******************************************************************************** EST sequence 16 -strand 1136 n (File: SGN-U325194-) 1 TTTTTTTTTA GGCAGCGAAT TATACAATTG TGCATTATAC AATTGCAGTG AAATAGGATA 61 GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAAT TTTATGTTTG CTATGGAACG 121 CAATTATGCG AAGTTTGCTA TAGCATACAA ATATGAATTT TTTGTTTGCT GTATGTGAAA 181 AAAGTTGCCC AAAAATAAAT GAGAGTTAGA TTTAAATGAA ATGGACACAT TGATTTCTCG 241 TCTAAAAGCA TTAAAGGTGG TTGATTCTTA CTCGACTAAG TGCAGTAGCT TCCCCAAGTC 301 CATATAACGA ATCAATCAAC AGTGTCCGCA GTGAAGCTGG ACCTCTAGCC ATGTCCATCC 361 CTGTTTCACT TGCGACACCA AATATAGCCA ATGCAGAAGC TGTTGCTTCC ACAGCATGGG 421 ATGGATCAAC AGCGACAAAG GCAGCAATGA GGGCAGTGAC TGAACATCCA GATGCAGTAA 481 TCTTTTGCAA CATAGGCACC CCATTGTGAA CACAAACAAC CCTATCACCG TCTGTGATAT 541 AGTCAACAGC TCCAGAAACA GCGACTACAC TACCACTTTG TTGAGCGATG GACTTAGCAG 601 CTTCAACAGC ATCACTTGAA CCATGTACAC TATCCACACC CTTGGAATTT GAGTCAACAC 661 AACCCTTGAA AAGAGCAAGA ATCTCAGACC CATTGCCTCT AACAACACTA GGTTTTAAAG 721 CAAGTAGCTC CAAACACGCC TTTAACCGGA AACTTGACCC ACCGGCAGCA ACAGGATCAA 781 GCACCCAAGG TTTTTTCGAT TGATTCGCCA CTTGTGCCGC TAATTTCATA CCGGGTAGCC 841 AGTCCGGAGT GAGGGTTCCG GCATTTATGC AAACTCCAAG GGCTTTTGGA GTAAATTCTG 901 GGATTTCTTC AACGGAATGA ATCATCGCCG GTGATGCGCC GGCGGATAAC AGAGTATTGG 961 CCATGAAATC CATTGAAACG AAGTTGGTTA TACATTGAAT TAATGGGGAT TTTTGACGAA 1021 CTAATTCGAA ATGTGTCCAT GCTTGTTTGG GCCAATCAAA AGGGAGTTCT TGAGCTCCCT 1081 TTTGGGGTTC AATGGTGTTA CTACTTTTGT CTTCTTCCAT AGGAGTCTAT AAGCGA Predicted gene structure (within gDNA segment 10925 to 1): Exon 1 10028 9971 ( 58 n); cDNA 17 75 ( 59 n); score: 0.922 Intron 1 9970 9940 ( 31 n); Pd: 0.000 (s: 0.91), Pa: 0.000 (s: 0.87) Exon 2 9939 9841 ( 99 n); cDNA 76 175 ( 100 n); score: 0.854 Intron 2 9840 7079 (2762 n); Pd: 0.000 (s: 0.84), Pa: 0.962 (s: 0) Exon 3 7078 7062 ( 17 n); cDNA 176 192 ( 17 n); score: 0.824 Intron 3 7061 6616 ( 446 n); Pd: 0.000 (s: 0), Pa: 0.705 (s: 0) Exon 4 6615 6593 ( 23 n); cDNA 193 215 ( 23 n); score: 0.609 Intron 4 6592 2475 (4118 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 5 2474 2458 ( 17 n); cDNA 216 231 ( 16 n); score: 0.765 Intron 5 2457 1776 ( 682 n); Pd: 0.000 (s: 0), Pa: 0.998 (s: 0) Exon 6 1775 1745 ( 31 n); cDNA 232 262 ( 31 n); score: 0.548 Intron 6 1744 726 (1019 n); Pd: 0.807 (s: 0), Pa: 1.000 (s: 0) Exon 7 725 719 ( 7 n); cDNA 263 269 ( 7 n); score: 0.714 MATCH C08HBa0235H18.1- SGN-U325194- 0.879 252 0.222 C PGS_C08HBa0235H18.1-_SGN-U325194- (10028 9971,9939 9841,7078 7062,6615 6593,2474 2458,1775 1745,725 719) Alignment (genomic DNA sequence = upper lines): GAATTATACA A-TATGCATT ATACAATTGC AGTGAAATAT GATAGCGAAT TATACAATTG 9970 |||||||||| | | |||||| |||||||||| ||||||||| |||||||||| ||||||||| GAATTATACA ATTGTGCATT ATACAATTGC AGTGAAATAG GATAGCGAAT TATACAATT. 75 CGGCGAAATA GGCCAGCAAA TTATACAATT GTATAT-TAT AGTGAATTAT ACAGTTTTAT 9911 |||||| ||| || ||||||| ||| |||||| .......... .......... .......... GTATATGTAT AGCGAATTAT ACAATTTTAT 105 GTTTGCTATG GAGCGTAATT ATACAAATTT TGCTATAACA CACAAATATA AATTTTTTAT 9851 |||||||||| || || |||| || | || || ||||||| || |||||||| |||||||| | GTTTGCTATG GAACGCAATT ATGCGAAGTT TGCTATAGCA TACAAATATG AATTTTTTGT 165 TTGCTATATG CGAAAGTTGT CCTAAAACAA TTAACAACAT TACTCTTGAA AATAATATTC 9791 ||||| |||| TTGCTGTATG .......... .......... .......... .......... .......... 175 TTTTGTCAAT ATAGTAAGTA ATGATGAATA ATTATTTAAC CACCAAAGTA ACATAAAAAA 9731 .......... .......... .......... .......... .......... .......... 175 CCCCACTCAC CAATATCTCC ATATACCCCC ATTTTCTTGA CTTTTTTGAG TGTAGATACA 9671 .......... .......... .......... .......... .......... .......... 175 CATACGTTTT TCTTTTAATT ATATATCCAC TTGACACATG ACATATTTTT TTATAATAAT 9611 .......... .......... .......... .......... .......... .......... 175 GGCGTGGAGT TAAAAAGTTT ACGTAATGTG AATTTAAATT ATTAAGTTAA GTTTTAAGAA 9551 .......... .......... .......... .......... .......... .......... 175 AAAAAAGAGT GAAATTATTT GAACATATTT TGTTAATGAT CAGTTATTTC AAATAAAACA 9491 .......... .......... .......... .......... .......... .......... 175 TGATAAATAT TTTAAAATGA ATTGAATATT ATGGTGCTAA GGACTTTGCT TCTTATTATC 9431 .......... .......... .......... .......... .......... .......... 175 AGGAGTGATT GCATAAAAGT CACGGAATAT GCACCATAAC GTGCTGAAAA TATGCAAAGG 9371 .......... .......... .......... .......... .......... .......... 175 GGCTGTGGTG GGATGTTAGT TTTCAATTTT TAATTTGATA TATCGAGTTT GAGCCATGAG 9311 .......... .......... .......... .......... .......... .......... 175 AGTAAATTTC TTTTCATTAT ATATAATAAG TGTTTTGCCT TCAAAGTGAA ATTTTTCGAA 9251 .......... .......... .......... .......... .......... .......... 175 TGCAAATTTA AATTTATCAA GCTCAATACA AATGTTGAAT ATCAAGAGCA TGATTAATAG 9191 .......... .......... .......... .......... .......... .......... 175 CGGAGTAATA ATTTTCATTA GAGGATTTTG AAATATGAGA AAATAAACAC ACTAACAATT 9131 .......... .......... .......... .......... .......... .......... 175 TAAAGAAAAA AAAAATTCAT TCATTAATTA ATCACTGTAT ATACATTAAA AATAATTTTA 9071 .......... .......... .......... .......... .......... .......... 175 ACTATATATA AATAAAATTA ATAATTATCT ATTTAAAAAA TTGAATAAAC CCCTTAATTC 9011 .......... .......... .......... .......... .......... .......... 175 TACGTGGCTC CACCTTAACC TTTGCATGAA ATATTCTAAA AGCCGCCTAC AAAAAAGATT 8951 .......... .......... .......... .......... .......... .......... 175 TCCACCTCGA CTAATTATTA TGTCCTATAA AGATAGCTAT CCTATATAGT AATTATAATA 8891 .......... .......... .......... .......... .......... .......... 175 GTTTATCTTG TCCCTACAAT TTTATATTTT TGATCTGATT ACGGTAGAAT GTTATCAATA 8831 .......... .......... .......... .......... .......... .......... 175 CTATTTTTCA TTCCTTTTTT TGTCTAAGGT TTAAGACTTA GATAATTAGG AATTAAAAAG 8771 .......... .......... .......... .......... .......... .......... 175 ACAAAATTAA ACGATACTCC AAATGCACTC TTGTGTGAGA ATTTTGAACA TCATGTGTAA 8711 .......... .......... .......... .......... .......... .......... 175 GACAAATTAA AGTACAATAT GTTATTGAAA TCTTAGCCAC CTCAAGATAA CAAACTAAAA 8651 .......... .......... .......... .......... .......... .......... 175 GAAATGTGGA TAATACAAAA GACAAGTAAT GAACAAAACT CAACCATTTT GAACAAGAAA 8591 .......... .......... .......... .......... .......... .......... 175 GAGGTGGCTA CACTCATGAT GAATCTACTT ATTAAGCAAC TTCAAGAGTA CTTGTAGGCA 8531 .......... .......... .......... .......... .......... .......... 175 TCTCCAATGG GAAATTTGTT GTTTCATTGT GAGTAGAGCC ATAAGGACAG AACATTATCT 8471 .......... .......... .......... .......... .......... .......... 175 TGTAGTCTGT AGTCCAACTC TGACAAGTAA AAGTACTAGT TGGATCGTCT TGAGGGTAAC 8411 .......... .......... .......... .......... .......... .......... 175 TATAGGCATC AGGACATCTT TGTTTGAAAA ATCTTGACAA TTCAGTAGGA CCACATGGAC 8351 .......... .......... .......... .......... .......... .......... 175 CGTGATTACA ACAATATTGT TGTCCTCCGA ATGTTGTACA AGGGTTGTTA CATCCTCCAG 8291 .......... .......... .......... .......... .......... .......... 175 GTACCCTAAG TGAACCAGGG CATTCACCGT TTATATTGGC TGTGCATTGA ATTGGATGAC 8231 .......... .......... .......... .......... .......... .......... 175 ATTTTCCAGG GCCAGGCTTA GTTGGGCCAA AAGACATAGG GATGTTGAAT CCATCAATAA 8171 .......... .......... .......... .......... .......... .......... 175 CAGAAATATC CCAAAAATCT AGGTTACCAA ACTGGTTCAA AGCGTATTCA GCTAAGGTGT 8111 .......... .......... .......... .......... .......... .......... 175 TTGGTGGTTT ACCCCATCCT TTGCAATCCA GGACTCCACC ACAATCACCA GTCTGGCACC 8051 .......... .......... .......... .......... .......... .......... 175 AACCTCTTCC AGCACCATCA AAGTTGCAAT TAGTACGACC CCAAATACGT GCCATTTTAG 7991 .......... .......... .......... .......... .......... .......... 175 TGCCAGGTGG GGCCCAAAAC CACCAACTCT GACCTCTCTC GAGACGTCGA CCACCTCCTA 7931 .......... .......... .......... .......... .......... .......... 175 CGGGGACCGC TGCCGCCCAA ACGGTGTAGG GGCAGTTGTT ATGGACCTCA AATACACCGG 7871 .......... .......... .......... .......... .......... .......... 175 AACCATAAGT GTAAGTCACA AAGGCAAGGA GAAAAAACAC TAAACAAGTT GTCAAGTGAC 7811 .......... .......... .......... .......... .......... .......... 175 TCATTTTAGT ATAAGAAGTT GTAGGATATA TTTGCATATC GAGCTAGGGG TTTATATAGT 7751 .......... .......... .......... .......... .......... .......... 175 GGTATGGCGG CTTTTTTTCA CTATGGACAT TAATCATATA AATATTGGCA CTTGTTATAA 7691 .......... .......... .......... .......... .......... .......... 175 ACATATATAG AAAATTAAAA AAAAAAATTG TATCCAAAAT ATCTCCACTT GAAAAAAAAA 7631 .......... .......... .......... .......... .......... .......... 175 GCCGCCAATA TAATATGAGT ACAGCCTATT ATAAGTAATA TATTTTGTTC ACTCCAGTCA 7571 .......... .......... .......... .......... .......... .......... 175 TATTTCACAG TTCAACTTTT TGCTATTTTG AAAATTTATG CATTAACACA TTATGATATT 7511 .......... .......... .......... .......... .......... .......... 175 TATAATGATT AAAAAAAAAA GAGAAGATAT TTTTTAATTA AGTGATATAT ACGTATTATT 7451 .......... .......... .......... .......... .......... .......... 175 AGTTTTGTGT TTAACTATAT ATTAATTTTA AATTATTTAG TTTAGTATAT ACAACAAATC 7391 .......... .......... .......... .......... .......... .......... 175 GGAAAAATGC ATGGCAGGGC ATGAAACCTA AAATTGTGGA AAATTTCCTA ATTTTTTTTG 7331 .......... .......... .......... .......... .......... .......... 175 AACATTTTTT CATGAGAAAT TTAGTTAGTA GAGAATTCTC TTCATAATTT TTATTGGTTA 7271 .......... .......... .......... .......... .......... .......... 175 TGTTTTCATA AATAAAATAA CTTAAAAATT TTGAATTACA AATTTGTAAT TTTTGTTTAC 7211 .......... .......... .......... .......... .......... .......... 175 AGACAATTGC CTTTTTTCCC TTGATTATTT TTTTCCGTCG TATATATATA GTGGATTTTT 7151 .......... .......... .......... .......... .......... .......... 175 ATATTAAATT ATTTATAGCA TATTTATCAA GTGGACATAA TAATTAATTG AAAATGTGCA 7091 .......... .......... .......... .......... .......... .......... 175 TGCATTCTAC AGTCAAAAAA GTTGAGCAAA TGGGTAGGCG TAGAGATGAG TGGAACCTTA 7031 | |||||| |||| ||| .......... ..TGAAAAAA GTTGCCCAA. .......... .......... .......... 192 AAAGTTTGAA TTTTTTTTTT ATTCGATACA AGCTATGTAG GTCTTGTTTC ACACGAGAAA 6971 .......... .......... .......... .......... .......... .......... 192 AATGAATTTT GAAATTAGTT ATGAATTTCG TTACTAATCT ATCTCTAATA TGCAAAGTTT 6911 .......... .......... .......... .......... .......... .......... 192 TGAATAATCT ATCCCTAATT GGTTACTAGA TATAGAACTA GCAATGATTT TTGTTATTGA 6851 .......... .......... .......... .......... .......... .......... 192 TTGAATAATT TGTTCGATAT TGATTTTTGT TTTATGTTTC CTCCGTCCGA TATTGTTTGT 6791 .......... .......... .......... .......... .......... .......... 192 TATGGTTTCT ATTTATAGAC TCAAACTATA AAAACTTTGA CTAACATTTG AAGATACATT 6731 .......... .......... .......... .......... .......... .......... 192 TTTTTATCAT ATTAATATGA AAAGATTGTA ATTTATAGTA CTTTTCATAT TGTTTTAGAA 6671 .......... .......... .......... .......... .......... .......... 192 TATTTAATTT TTTTGGTTTA AAGTATCGAA TTAATGTGAT TTAATTTACC TTTAGAAATC 6611 |||| .......... .......... .......... .......... .......... .....AAATA 197 AATCAAAATT GACTTTCGAT AAGCGTAACA TGACAAATAT TTCTGGACGG AGGGAGTATT 6551 ||| | | || ||| AATGAGAGTT AGATTTAA.. .......... .......... .......... .......... 215 GATTTTTTAT CGTTGTCATC ATGGTCGTCT TTGTTTGTTG GTTCATAATA AGATATTCTT 6491 .......... .......... .......... .......... .......... .......... 215 GAGTTTAAAT GAGATGATTG TATATTTGAG TTTAATTTTG GAACATGCAA GAGTTTTTGG 6431 .......... .......... .......... .......... .......... .......... 215 ATTTGATTTT GATCGGTAGA TGTACTAGTA CCTGCCACCA AAACATCGTG AAGGATTCAG 6371 .......... .......... .......... .......... .......... .......... 215 TGAACGACTT GAAACTTAGT AACACAAGAC AATTCACTGA ATGGTTGTTG GCTCTACCGG 6311 .......... .......... .......... .......... .......... .......... 215 AGGAGTCTGA AATCAACAAC GTGTAACTGC TTGGGCAGAA TAAAAGAACT TAAATTGTTT 6251 .......... .......... .......... .......... .......... .......... 215 TAATAGAATT TTTTAAGTAA CATTGCAATT ATTTAAGCAA TACGAACGCC CAATTGTATT 6191 .......... .......... .......... .......... .......... .......... 215 TTATTTTATT TTTTTATAAT AAAAGAGTTT TGGAAGTAAT GAATTTTAAT ACAATATCAA 6131 .......... .......... .......... .......... .......... .......... 215 TATTTAAATA ATGTTGAATT CTTAGCTTAG GCATTGAATC GCAATTGAAA GTGAAAGCCC 6071 .......... .......... .......... .......... .......... .......... 215 TTTTTTGCTA TTTCAAGTTA TGAATTCAGA TACTAAAGGA TAACGTCTTT TAGAAGGAAG 6011 .......... .......... .......... .......... .......... .......... 215 ATATTAATGG GGTAAGTGAT TTTTAAAAGT TGACTTTTAT ATAAAATTAT CTTCTTCTTT 5951 .......... .......... .......... .......... .......... .......... 215 TTTCTTTTTC TTTTTTGTAT ATCGACTCAT TTAATTATCA GTTTAACTTA ATGTTCGAAT 5891 .......... .......... .......... .......... .......... .......... 215 CTTTAAGCTT TTTAATTAAT ATTGAATTTA TTATTTCTTT AAACTTATAA ATTCAAATCT 5831 .......... .......... .......... .......... .......... .......... 215 AAACACTTAT TAAAATTTTA ATGAATTTTC ATATACTATA GTATACTTGA AAATGTTCCA 5771 .......... .......... .......... .......... .......... .......... 215 AAAGCCGCCA ATAAAAAAAT ATTTCCATCT GTTTGACTTA TATTATGACA TGTAACGAGT 5711 .......... .......... .......... .......... .......... .......... 215 TGTCCCTACA ATTTTATATT TTCAGATCTA GGTACTTTAA TATATTAACT AGACTAATTT 5651 .......... .......... .......... .......... .......... .......... 215 TTTTTCATTA TAATTAAAAA TTTTAAGAAA AAAACTGTAC TCCAGATATA ATTTCAATTT 5591 .......... .......... .......... .......... .......... .......... 215 AAAATTAAAA TACCATATAT AAGACAAAGC ATCGATCATA GATTGTTATT CAGATCTTAG 5531 .......... .......... .......... .......... .......... .......... 215 CCACTTCAAA CAAACAAATG TAAAAGAAAT GTGTACAAGG CAAATTAAAG ACAATGTCCA 5471 .......... .......... .......... .......... .......... .......... 215 TCTTCAAAAC AAATTTAACA AAAAAGAGAT TGGCTCAACT CAAGATTTCT ACTTAATTAA 5411 .......... .......... .......... .......... .......... .......... 215 GCCACTTCAA GAGTATTTGT AGGAATCTCC AATGGGAAAT TTGTTGTTTC ATTGTGAGTA 5351 .......... .......... .......... .......... .......... .......... 215 GAGCCATAAG GACAAAACAT AACCTTGTAG TCTGTAGTCC AACTCTGACA AGTAAAAGTA 5291 .......... .......... .......... .......... .......... .......... 215 CTTGTTGGAT CGTCTTGAGG ATAACTATAG GCATCGGGAC ATCTTTGTTT GAAAAATCTT 5231 .......... .......... .......... .......... .......... .......... 215 GACAAATCGG TAGGACCACA TGGACCTTGA GTGCAACAAT ATTGTTGTCC TCCGAATGTA 5171 .......... .......... .......... .......... .......... .......... 215 GTACAAGGGT TGTTACATCC TCCGGGTACC CTAAGTGAAC CAGGGCATTC ACCGTTTATA 5111 .......... .......... .......... .......... .......... .......... 215 TTAGCAACAC ATTGAATTGG ATGACATTTT CCCGGCCCAG GGTTAGTTGG GCCGAAAGAC 5051 .......... .......... .......... .......... .......... .......... 215 ATAGGGATGT TGAATCCATC AATAACAGAA ATGTCCCAGA AATCTAAGTT GCTAAATTGA 4991 .......... .......... .......... .......... .......... .......... 215 TTCAAAGCGT ATTCAGCTAA GGTGTTTGGT GGTTTACCCC ATCCTTTGCA TTCCAAGACT 4931 .......... .......... .......... .......... .......... .......... 215 CCACCACAAT CACCGGTCTG GCACCAACCT CTACCAGCAC CATCAAAATT GCAATTAGTA 4871 .......... .......... .......... .......... .......... .......... 215 CGACCCCAAA TACGTGCCAT TTTGGTGCCC GGTGGAGCCC AAAACCACCA ACTTTGACCT 4811 .......... .......... .......... .......... .......... .......... 215 CTCTCGAGAC GTCGGCCACC TCCTACGGGA GTCGCCGCTG CCCATACGGT GTATGGACAG 4751 .......... .......... .......... .......... .......... .......... 215 TTGTTATGGA CCTCAAATAC ACCGGAAGCA TAAGTGTAAG TCACAAAGGC AAGGAGAAAG 4691 .......... .......... .......... .......... .......... .......... 215 AACACTAAAC AAGTTGTCAA ATGACTCATT TTAGAATAAA AGAAGAATAT TTGGTTTGTT 4631 .......... .......... .......... .......... .......... .......... 215 GATATATTTA CACAATAAAT TAGGGGTTTA TATAGGGGTA TGGCGGCTTT TTACACTATG 4571 .......... .......... .......... .......... .......... .......... 215 GACAATATTA TAAATATATA TATATATATA TGTATATATA GACACTTGAT ATATTAATAA 4511 .......... .......... .......... .......... .......... .......... 215 AACCATAATT TATATTTTTT TATAAAGATA TAGCTAGATA GGCGGCTATA AGCATATACA 4451 .......... .......... .......... .......... .......... .......... 215 ATTATTATGT ACAATGAACA TATACAAAAC CTAATAATTT TGCTTGGTCA TAATATGTCC 4391 .......... .......... .......... .......... .......... .......... 215 ACTTGAGATA ATAATCTGCA CATAATATCC ATTTTAAAAA AATAAGAAAT GTATGATATA 4331 .......... .......... .......... .......... .......... .......... 215 TCACTAAAAG GGAGTGATAT TAATAAATCA TAAAAAAAAA TTTACGATCA TCACTTTTTT 4271 .......... .......... .......... .......... .......... .......... 215 TACCAAATCT ATTAAACGGT GAAATCGAAA TTTATTTTTG AAACAAACGG TAAATCTTAT 4211 .......... .......... .......... .......... .......... .......... 215 AAAGAAAAAA TGTTAAATCA CTTTCTTAAT ATTCGTTTGT TAAACAAGCA TTAAATGATA 4151 .......... .......... .......... .......... .......... .......... 215 GTCTAAATAT TTCTTGGATC ACCTCATCAA CCATCAAGGC CCAAAGGGTA TATATCAAAT 4091 .......... .......... .......... .......... .......... .......... 215 ATCTCTTAAA AAGGGAATTT GTTTAAACAG AAAAGAAACA ATACTTTAAA AAGATATTTT 4031 .......... .......... .......... .......... .......... .......... 215 TTACTCAAAA GTAGTAATAG GATATTTTTT GACTAAAATA TTCATGGTAG GGATATGTTT 3971 .......... .......... .......... .......... .......... .......... 215 GGACAAGAAT ATTAATAGGA TGGCATTTTT GAAGAAGACA TTTGTTGAAT TTCACGTAGT 3911 .......... .......... .......... .......... .......... .......... 215 TCAAAGATAC TTTTTTTTAA ATCTATTTTA TTAAAATAAA AGCTAAAAAT GTCAAAACAT 3851 .......... .......... .......... .......... .......... .......... 215 ATTTGAACAA TCTTTTTTTT TTAATATCAT ATTTAAATTA TTGAAAATGT ATAAAACATG 3791 .......... .......... .......... .......... .......... .......... 215 TTCCTAAGTA CTCCGATTCC TTATAAAAGA TATTCAGTTC GTTAGAATAG AAGTGAAAGA 3731 .......... .......... .......... .......... .......... .......... 215 GGATATTTAT GTTTGTCGTG TTCTTTATAT GGACATCCGA GGCCAGGGGT CCATTCTCTT 3671 .......... .......... .......... .......... .......... .......... 215 GACCTGTACT GATGAGAATT TGACTGCACG AGAAATTGAA CAAAAAGCTG CTGAATTAGC 3611 .......... .......... .......... .......... .......... .......... 215 CTTTTTTCAG TCACAAAAAC GAATAATTGA AACCTAAAAT CTTAAAATGA AGAAGATTCT 3551 .......... .......... .......... .......... .......... .......... 215 ATTGATTCAT TTCTACAATA TTACCACTCA TTAATTTGAA GAAAAAAAAA CACAATTCAA 3491 .......... .......... .......... .......... .......... .......... 215 TTCTAACCAG ACCAAATGCA CACTCCGACG CATTTGATCC AAAAAAAAAA ATAATCCACG 3431 .......... .......... .......... .......... .......... .......... 215 TGGCTTTTTT TTCGCCAACG CAATCTAACA TAATCAAATG TGTGTATACA CGTAATACAC 3371 .......... .......... .......... .......... .......... .......... 215 ACGACATCAC ATATTACTTG AAGTATATTT CTCAAACTTA TTATTATTAG TTTAAATATG 3311 .......... .......... .......... .......... .......... .......... 215 TTTTTCATAC TCGAAATAAT TTAGGTGCGT AAAATGTGAT TTTCTTTTTT GCCTTTTTTG 3251 .......... .......... .......... .......... .......... .......... 215 GTCTAAAATG TGATTTTCGC CTAAACCGTC CGGTTCACTT TACACTCACC GGTCTAACCC 3191 .......... .......... .......... .......... .......... .......... 215 CACTTTAAAC CGGTCTTTTG TTCACATATA AATACACATC AGCTCAACAT ATTCTTCATC 3131 .......... .......... .......... .......... .......... .......... 215 GAAACAAAAA AAAAAAAAAA GAAAACGATC TCTGTCCGAA AATTCGTGCG AGAATCTGTT 3071 .......... .......... .......... .......... .......... .......... 215 TTTTTTTCCT GGGAATCTGC TAAGAGTTTG ATTGAAAATG GTACGAGGAA AACTTGTAGT 3011 .......... .......... .......... .......... .......... .......... 215 TCAACTTGTT GGAGCTAAAG GCCTTGAAAA CACTGATTTT CTCAGTAAGT TTTTTGTTTT 2951 .......... .......... .......... .......... .......... .......... 215 TTTTTCTAAT TTATTTGTTT TGATCTGATC AGATTAATGT ATAGATCTCT TTTTTCTTTC 2891 .......... .......... .......... .......... .......... .......... 215 GATTACATTT GATGTTTTCT TAATCAACCT AATTTTCGAT TGTTACTTAT GTGAATTAGA 2831 .......... .......... .......... .......... .......... .......... 215 GGTTGATCTA CATGTAATTT ATGTGTTCAC ACAACACCTG TTTGAATGTG CGTTTTATTT 2771 .......... .......... .......... .......... .......... .......... 215 AGGAAAATAG AGAATTATTT GAAGATCGGA TCAAATTTTC ATGATCAAAC AGATATTTGT 2711 .......... .......... .......... .......... .......... .......... 215 CAAAATTCAT GGCCAAACCT TATCAATGTA TATTAATTTG ACTTCGTGGT AAACTTTAAA 2651 .......... .......... .......... .......... .......... .......... 215 TTTTGAATCA AAGTATGTGA AGTTGACATT TAGGTCTATG CCTAGTCAAA CGATGTCAAA 2591 .......... .......... .......... .......... .......... .......... 215 TAAAATAGAA TCGAGGAATA TGAATCAAAA ATCGATAATC ATCTTGGCTA ATTTGATTGA 2531 .......... .......... .......... .......... .......... .......... 215 TACTCTGTAT TTTATTTTAT TTTTTAATTT AAAAAATGTT ATTTTGTGTG ATACAGATGA 2471 |||| .......... .......... .......... .......... .......... ......ATGA 219 TATGGATCCA TATGTGATCT TAACTTATAG ATCTCAGGAG AAAAAGAGTA CTGTTGCATC 2411 ||||| || | | AATGGACACA T-T....... .......... .......... .......... .......... 231 AGGTACATTT GTTAATAATC TTTGGTTAAT TATTACTTAG TTATTAGTTA CCTATGTTTT 2351 .......... .......... .......... .......... .......... .......... 231 TTTTAAGAAA AATGAAATGA AGTTTGATCA ATCGATATTT ATAATGTTAA ATTTTCATAG 2291 .......... .......... .......... .......... .......... .......... 231 GGAAGGGATG TGAACCAGAA TGGAATGAAA CATTTGTTTT CTCCATTTCT GAGGATGCTG 2231 .......... .......... .......... .......... .......... .......... 231 AAGAACTCTT CTTGAAGATA ATGGACAGTG ATTCTATCGG CGAGGACGAT ATTGTTGGGG 2171 .......... .......... .......... .......... .......... .......... 231 AAGCTAAGTA AGTATATCTA ATTAGAGGCG AATCTAAGAT TATACGTATT TTCTCTATAT 2111 .......... .......... .......... .......... .......... .......... 231 TAACATAGTT TGAGTTTGAT AGTACATGCA TCCATGACTT GTATATGTTG AGATAAATAG 2051 .......... .......... .......... .......... .......... .......... 231 ACGTATATGA CTTTAGATAA GAAGACGTGG AGGTCGAAAA TTAGGGTAGA AGGTTAGTAG 1991 .......... .......... .......... .......... .......... .......... 231 TTAGTGAGCC TGAGTGTTGT TGCACTTGTT ATTGGAGAGG AAGAGGGCTA GCCTAGTCTC 1931 .......... .......... .......... .......... .......... .......... 231 TACTTCTCCT TTTTAGTAGT AGTATTTTGT ATATCGCGTA GTTTCCTTTC TTTAATGATT 1871 .......... .......... .......... .......... .......... .......... 231 ATTACAATCA GTTGCTTCAT TTGATTTGTA TCTTGCTATT TTGTCGTTTT ATTTACTTGC 1811 .......... .......... .......... .......... .......... .......... 231 ACCATGCTTT TTCTTTTCTT TTCTTTTGAG TTCAGGGTCC TTCGTGAACA ACCTGCAAAG 1751 | | |||| | | | | |||| .......... .......... .......... .....GATTT CTCGTCTAAA AGCATTAAAG 256 GTAGGGGTAT GTTCAGCGTA CATCGATATC CTACCTTCCC AATATCCAAC TTGTGAAATT 1691 || | GTGGTT.... .......... .......... .......... .......... .......... 262 ACACTGAATA TATAGTTATT TTTGTGGTTG TTGTAGTATA CATCTACTTT CTAGTGGTGT 1631 .......... .......... .......... .......... .......... .......... 262 TATACAAACC ATGGTTTAAA CGGTTGAGAT TATTAGTTCA TGGAGTCGAA TAAGCATTTG 1571 .......... .......... .......... .......... .......... .......... 262 CCTAAAACAG TTGAGATTAT TAGTTCATGG AGTCGAATAA GCATTTCCCT AAAACAGTTG 1511 .......... .......... .......... .......... .......... .......... 262 AGATTATTAG TTCATGGAGT CGAATAAGCA TTTGCCTAAA ACAGTTGAGA TTATTAGTTC 1451 .......... .......... .......... .......... .......... .......... 262 ATGGAGTCGA ATAAGCATTT GCCTAAAACA GTTGAGATTA TTAGTTCATG GAGTCGAATA 1391 .......... .......... .......... .......... .......... .......... 262 AGCATTTGCC TAAAACAGTT GAGATTATTA GTTCATGGAG TCGAATAAGC ATTTGCCTAA 1331 .......... .......... .......... .......... .......... .......... 262 AACAGTTGAG ATTATTAGTT CATGGAGTCG AATAAGCATT TGCCTAAAAC AGTTGAGATT 1271 .......... .......... .......... .......... .......... .......... 262 ATTAGTTCAT GGAGTCGAAT AAGCATTTGC CTAAAACAGT TGAGATTATT AGTTCATGGA 1211 .......... .......... .......... .......... .......... .......... 262 GTCGAATAAG CATTTGCCTA AAACAGTTGA GATTATTAGT TCATGGAGTC GAATAAGCAT 1151 .......... .......... .......... .......... .......... .......... 262 TTACCTATCA GAGACGAATC TAAGATTTAT ACAATTTCTG TATATACAAT TTCTGTATAT 1091 .......... .......... .......... .......... .......... .......... 262 ATATATATAT ATATATATGC AAACATAATC TGAGTTTGCT AGTATTGGTT TTGAGATATG 1031 .......... .......... .......... .......... .......... .......... 262 TTCAATAATA TGTTACTTGC AGGATACCAA TTGAACCAGT TTTTTCAGAA GGGAGCATCC 971 .......... .......... .......... .......... .......... .......... 262 CAATAACATG TTATAATGTT GTTAAAGATG AGGAATATTG TGGAGAAATT AAAGTTGGTC 911 .......... .......... .......... .......... .......... .......... 262 TCACCTTTAC TCCTGAGGCA AGTTACTTTC TAAAATTTTA TTGATTTATA AAAAAAAAAA 851 .......... .......... .......... .......... .......... .......... 262 AAAAAAAGGT TATGCCTCAA TCCCGAGCTA ACAAGTTCAG ATTGGCTATA TGAATAAAGG 791 .......... .......... .......... .......... .......... .......... 262 AACTCGTAAC ATGCAAGTAT AATAGGTATT CTATGTGCAT GATATATTTT GCTATGTTTT 731 .......... .......... .......... .......... .......... .......... 262 TGTAGGAATA TT 719 || | || .....GATTC TT 269 hqPGS_C08HBa0235H18.1-_SGN-U325194- (10028 9971,9939 9841) ******************************************************************************** EST sequence 34 -strand 922 n (File: SGN-U312653-) 1 AAACAACATT TTTTTTTTTG TGATGATGTG ACTTTTATTC ATGTAATTAT ATTAGGTTTA 61 TTACAAGCCA ATTATATAAC TCGACTACTT CAAGCAATTT AAAAGAAAGT GACTCAATTT 121 TACTTAGCCT CTTCATCACT TGAGGGCATC TCCAAGGGGA AATTTGGGCT AGTAACACCA 181 TTAGGACAAA AAACAACCCT ATAATTTGTA CTACCACTAG GGCAAGTAAA TGTGCTAGTA 241 GGATCATCTT GTGGGTAGCT ATACGCATCA GGACATCTTT GTTTGAAAAA TCTCGACAAA 301 TCAGTAGGGC CACATGGACC TTGTGTGCAA CAATATTGTT GTCCTCCGAA CGTGGTACAA 361 GGATTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGAC ATTCACCATT TATATTAGCC 421 GTACAATGAA TTGCATGGCA TTTCCCTCCA CTAGGATTGG TCGGGGCGAA AGTCATTGGA 481 ATATTAAATC CATCGACTAA AGAAATGTCC CAGAAATCTA GGTTGCTAAA CTGGTCCAAG 541 GCGTACTCGG CCAGGGTGTT TGGTGGTTTG CCCCACCCGG TACATTGCAA GACCCCACCA 601 CAATCACCAG TCTGACATGA ACCTCTACCA GCACCATCAA AGTTGCAATT CGTACGACCC 661 CATATACGTG CCATCTTAGT GCCCCTCGGT GCATTGATGA CCCATGTTTG GCCTCGATCA 721 AGACGTCGAC CACCGCCTAT TGGGGTCGAC GCCGCCCAGA CGGTGTATGG ACAGTTGTTG 781 CGTACCTCGA AAGTGGCAGC ATAAGTGTAA GTCACAAAAG CAAGAAGGAA GAAAACAAAA 841 GAAGATCTCA AGTAGGCCAT GTTTGTGGAA CTATTTTTTT AAATGTAAGT TGTTCAATTC 901 GGCCGATTGG CCGCCAATCG CC Predicted gene structure (within gDNA segment 10501 to 13028): Exon 1 11271 12145 ( 875 n); cDNA 17 891 ( 875 n); score: 1.000 MATCH C08HBa0235H18.1+ SGN-U312653- 1.000 875 0.949 C PGS_C08HBa0235H18.1+_SGN-U312653- (11271 12145) Alignment (genomic DNA sequence = upper lines): TTTGTGATGA TGTGACTTTT ATTCATGTAA TTATATTAGG TTTATTACAA GCCAATTATA 11330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATGA TGTGACTTTT ATTCATGTAA TTATATTAGG TTTATTACAA GCCAATTATA 76 TAACTCGACT ACTTCAAGCA ATTTAAAAGA AAGTGACTCA ATTTTACTTA GCCTCTTCAT 11390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTCGACT ACTTCAAGCA ATTTAAAAGA AAGTGACTCA ATTTTACTTA GCCTCTTCAT 136 CACTTGAGGG CATCTCCAAG GGGAAATTTG GGCTAGTAAC ACCATTAGGA CAAAAAACAA 11450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTGAGGG CATCTCCAAG GGGAAATTTG GGCTAGTAAC ACCATTAGGA CAAAAAACAA 196 CCCTATAATT TGTACTACCA CTAGGGCAAG TAAATGTGCT AGTAGGATCA TCTTGTGGGT 11510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTATAATT TGTACTACCA CTAGGGCAAG TAAATGTGCT AGTAGGATCA TCTTGTGGGT 256 AGCTATACGC ATCAGGACAT CTTTGTTTGA AAAATCTCGA CAAATCAGTA GGGCCACATG 11570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTATACGC ATCAGGACAT CTTTGTTTGA AAAATCTCGA CAAATCAGTA GGGCCACATG 316 GACCTTGTGT GCAACAATAT TGTTGTCCTC CGAACGTGGT ACAAGGATTG TTACATCCTC 11630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCTTGTGT GCAACAATAT TGTTGTCCTC CGAACGTGGT ACAAGGATTG TTACATCCTC 376 CGGGTACCCT AAGTGAACCA GGACATTCAC CATTTATATT AGCCGTACAA TGAATTGCAT 11690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTACCCT AAGTGAACCA GGACATTCAC CATTTATATT AGCCGTACAA TGAATTGCAT 436 GGCATTTCCC TCCACTAGGA TTGGTCGGGG CGAAAGTCAT TGGAATATTA AATCCATCGA 11750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATTTCCC TCCACTAGGA TTGGTCGGGG CGAAAGTCAT TGGAATATTA AATCCATCGA 496 CTAAAGAAAT GTCCCAGAAA TCTAGGTTGC TAAACTGGTC CAAGGCGTAC TCGGCCAGGG 11810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAAGAAAT GTCCCAGAAA TCTAGGTTGC TAAACTGGTC CAAGGCGTAC TCGGCCAGGG 556 TGTTTGGTGG TTTGCCCCAC CCGGTACATT GCAAGACCCC ACCACAATCA CCAGTCTGAC 11870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGTGG TTTGCCCCAC CCGGTACATT GCAAGACCCC ACCACAATCA CCAGTCTGAC 616 ATGAACCTCT ACCAGCACCA TCAAAGTTGC AATTCGTACG ACCCCATATA CGTGCCATCT 11930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAACCTCT ACCAGCACCA TCAAAGTTGC AATTCGTACG ACCCCATATA CGTGCCATCT 676 TAGTGCCCCT CGGTGCATTG ATGACCCATG TTTGGCCTCG ATCAAGACGT CGACCACCGC 11990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGCCCCT CGGTGCATTG ATGACCCATG TTTGGCCTCG ATCAAGACGT CGACCACCGC 736 CTATTGGGGT CGACGCCGCC CAGACGGTGT ATGGACAGTT GTTGCGTACC TCGAAAGTGG 12050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGGGGT CGACGCCGCC CAGACGGTGT ATGGACAGTT GTTGCGTACC TCGAAAGTGG 796 CAGCATAAGT GTAAGTCACA AAAGCAAGAA GGAAGAAAAC AAAAGAAGAT CTCAAGTAGG 12110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCATAAGT GTAAGTCACA AAAGCAAGAA GGAAGAAAAC AAAAGAAGAT CTCAAGTAGG 856 CCATGTTTGT GGAACTATTT TTTTAAATGT AAGTT 12145 |||||||||| |||||||||| |||||||||| ||||| CCATGTTTGT GGAACTATTT TTTTAAATGT AAGTT 891 hqPGS_C08HBa0235H18.1+_SGN-U312653- (11271 12145) ******************************************************************************** EST sequence 47 -strand 832 n (File: SGN-U333797-) 1 TTTTTTTTTT TTTTGTGATG ATGTGACTTT TATTCATGTA ATTATATTAG GTTTATTACA 61 AGCCAATTAT ATAACTTCGA CTACTTCAAG CAATTTAAAA GAAAGTGACT CAATTTTACT 121 TAGCCTCTTC ATCACTTGAG GGCATCTCCA AGGGGAAATT TGGGCTAGTA ACACCATTAG 181 GACAAAAAAC AACCCTATAA TTTGTACTAC CACTAGGGCA AGTAAATGTG CTAGTAGGAT 241 CATCTTGTGG GTAGCTATAC GCATCAGGAC ATCTTTGTTT GAAAAATCTC GACAAATCAG 301 TAGGGCCACA TGGACCTTGT GTGCAACAAT ATTGTTGTCC TCCGAACGTG GTACAAGGAT 361 TGTTACATCC TCCGGGTACC CTAAGTGAAC CAGGACATTC ACCATTTATA TTAGCCGTAC 421 AATGAATTGC ATGGCATTTC CCTCCACTAG GATTGGTCGG GGCGAAAGTC ATTGGAATAT 481 TAAATCCATC GACTAAAGAA ATGTCCCAGA AATCTAGGTT GCTAAACTGG TCCAAGGCGT 541 ACTCGGCCAG GGTGTTTGGT GGTTTGCCCC ACCCGGTACA TTGCAAGACC CCACCACAAT 601 CACCAGTCTG ACATGAACCT CTACCATCAC CATCAAAGTT GCAATTCGTA CGACCCCATA 661 TACGTGCCAT CTTAGTGCCC CTCGGTGCAT TGATGACCCA TGTTTGGCCT CGATCAAGAC 721 GTCGACCACC GCCTATTGGG GTCGACGCCG CCCAGACGGT GTATGGACAG TTGTTGCGTA 781 CCTCGAAAGT GGCAGCATAA GTGTAAGTCA CAAAAGCAAG AAGGAAAAAA AA Predicted gene structure (within gDNA segment 10551 to 12744): Exon 1 11271 12089 ( 819 n); cDNA 12 831 ( 820 n); score: 0.995 PPA cDNA 11 1 MATCH C08HBa0235H18.1+ SGN-U333797- 0.995 819 0.984 C PGS_C08HBa0235H18.1+_SGN-U333797- (11271 12089) Alignment (genomic DNA sequence = upper lines): TTTGTGATGA TGTGACTTTT ATTCATGTAA TTATATTAGG TTTATTACAA GCCAATTATA 11330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATGA TGTGACTTTT ATTCATGTAA TTATATTAGG TTTATTACAA GCCAATTATA 71 TAAC-TCGAC TACTTCAAGC AATTTAAAAG AAAGTGACTC AATTTTACTT AGCCTCTTCA 11389 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTCGAC TACTTCAAGC AATTTAAAAG AAAGTGACTC AATTTTACTT AGCCTCTTCA 131 TCACTTGAGG GCATCTCCAA GGGGAAATTT GGGCTAGTAA CACCATTAGG ACAAAAAACA 11449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTGAGG GCATCTCCAA GGGGAAATTT GGGCTAGTAA CACCATTAGG ACAAAAAACA 191 ACCCTATAAT TTGTACTACC ACTAGGGCAA GTAAATGTGC TAGTAGGATC ATCTTGTGGG 11509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTATAAT TTGTACTACC ACTAGGGCAA GTAAATGTGC TAGTAGGATC ATCTTGTGGG 251 TAGCTATACG CATCAGGACA TCTTTGTTTG AAAAATCTCG ACAAATCAGT AGGGCCACAT 11569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTATACG CATCAGGACA TCTTTGTTTG AAAAATCTCG ACAAATCAGT AGGGCCACAT 311 GGACCTTGTG TGCAACAATA TTGTTGTCCT CCGAACGTGG TACAAGGATT GTTACATCCT 11629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTTGTG TGCAACAATA TTGTTGTCCT CCGAACGTGG TACAAGGATT GTTACATCCT 371 CCGGGTACCC TAAGTGAACC AGGACATTCA CCATTTATAT TAGCCGTACA ATGAATTGCA 11689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGGTACCC TAAGTGAACC AGGACATTCA CCATTTATAT TAGCCGTACA ATGAATTGCA 431 TGGCATTTCC CTCCACTAGG ATTGGTCGGG GCGAAAGTCA TTGGAATATT AAATCCATCG 11749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCATTTCC CTCCACTAGG ATTGGTCGGG GCGAAAGTCA TTGGAATATT AAATCCATCG 491 ACTAAAGAAA TGTCCCAGAA ATCTAGGTTG CTAAACTGGT CCAAGGCGTA CTCGGCCAGG 11809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAAAGAAA TGTCCCAGAA ATCTAGGTTG CTAAACTGGT CCAAGGCGTA CTCGGCCAGG 551 GTGTTTGGTG GTTTGCCCCA CCCGGTACAT TGCAAGACCC CACCACAATC ACCAGTCTGA 11869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTGGTG GTTTGCCCCA CCCGGTACAT TGCAAGACCC CACCACAATC ACCAGTCTGA 611 CATGAACCTC TACCAGCACC ATCAAAGTTG CAATTCGTAC GACCCCATAT ACGTGCCATC 11929 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAACCTC TACCATCACC ATCAAAGTTG CAATTCGTAC GACCCCATAT ACGTGCCATC 671 TTAGTGCCCC TCGGTGCATT GATGACCCAT GTTTGGCCTC GATCAAGACG TCGACCACCG 11989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTGCCCC TCGGTGCATT GATGACCCAT GTTTGGCCTC GATCAAGACG TCGACCACCG 731 CCTATTGGGG TCGACGCCGC CCAGACGGTG TATGGACAGT TGTTGCGTAC CTCGAAAGTG 12049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGGGG TCGACGCCGC CCAGACGGTG TATGGACAGT TGTTGCGTAC CTCGAAAGTG 791 GCAGCATAAG TGTAAGTCAC AAAAGCAAGA AGGAAGAAAA 12089 |||||||||| |||||||||| |||||||||| ||||| |||| GCAGCATAAG TGTAAGTCAC AAAAGCAAGA AGGAAAAAAA 831 hqPGS_C08HBa0235H18.1+_SGN-U333797- (11271 12089) ******************************************************************************** EST sequence 55 -strand 968 n (File: SGN-U314099-) 1 TTTTTTTTTT TTTTTACTCC AAATGCACTC TTGTGTGAGA ATTTTGAACA TCATGTGTAA 61 GACAAATTAA AGTACAATAT GTTATTGAAA TCTTAGCCAC CTCAAGATAA CAAACTAAAA 121 GAAATGTGGA TAATACAAAA GACAAGTAAT GAACAAAACT CAACCATTTT GAACAAGAAA 181 GAGGTGGCTA CACTCATGAT GAATCTACTT ATTAAGCAAC TTCAAGAGTA CTTGTAGGCA 241 TCTCCAATGG GAAATTTGTT GTTTCATTGT GAGTAGAGCC ATAAGGACAG AACATTATCT 301 TGTAGTCTGT AGTCCAACTC TGACAAGTAA AAGTACTAGT TGGATCGTCT TGAGGGTAAC 361 TATAGGCATC AGGACATCTT TGTTTGAAAA ATCTTGACAA TTCAGTAGGA CCACATGGAC 421 CGTGATTACA ACAATATTGT TGTCCTCCGA ATGTTGTACA AGGGTTGTTA CATCCTCCAG 481 GTACCCTAAG TGAACCAGGG CATTCACCGT TTATATTGGC TGTGCATTGA ATTGGATGAC 541 ATTTTCCAGG GCCAGGCTTA GTTGGGCCAA AAGACATAGG GATGTTGAAT CCATCAATAA 601 CAGAAATATC CCAAAAATCT AGGTTACCAA ACTGGTTCAA AGCGTATTCA GCTAAGGTGT 661 TTGGTGGTTT ACCCCATCCT TTGCAATCCA GGACTCCACC ACAATCACCA GTCTGGCACC 721 AACCTCTTCC AGCACCATCA AAGTTGCAAT TAGTACGACC CCAAATACGT GCCATTTTAG 781 TGCCAGGTGG GGCCCAAAAC CACCAACTCT GACCTCTCTC GAGACGTCGA CCACCTCCTA 841 CGGGGACCGC TGCCGCCCAA ACGGTGTAGG GGCAGTTGTT ATGGACCTCA AATACACCGG 901 AACCATAAGT GTAAGTCACA AAGGCAAGGA GAAAAAACAC TAAACAAGTT GTCAAGTGAC 961 TCATTTTA Predicted gene structure (within gDNA segment 9005 to 19381): Exon 1 11425 12117 ( 693 n); cDNA 272 967 ( 696 n); score: 0.783 PPA cDNA 15 1 MATCH C08HBa0235H18.1+ SGN-U314099- 0.783 693 0.716 C PGS_C08HBa0235H18.1+_SGN-U314099- (11425 12117) Alignment (genomic DNA sequence = upper lines): AGTAACACCA TTAGGACAAA AAACAACCCT ATAATTTGTA CTACCACTAG GGCAAGTAAA 11484 |||| ||| | |||||| | | | | | | || | |||| | | ||| | |||||||| AGTAGAGCCA TAAGGACAGA ACATTATCTT GTAGTCTGTA GTCCAACTCT GACAAGTAAA 331 TGTGCTAGTA GGATCATCTT GTGGGTAGCT ATACGCATCA GGACATCTTT GTTTGAAAAA 11544 || ||||| ||||| |||| | ||||| || ||| |||||| |||||||||| |||||||||| AGTACTAGTT GGATCGTCTT GAGGGTAACT ATAGGCATCA GGACATCTTT GTTTGAAAAA 391 TCTCGACAAA TCAGTAGGGC CACATGGACC TTGTGTGCAA CAATATTGTT GTCCTCCGAA 11604 ||| ||||| |||||||| | |||||||||| || | ||| |||||||||| |||||||||| TCTTGACAAT TCAGTAGGAC CACATGGACC GTGATTACAA CAATATTGTT GTCCTCCGAA 451 CGTGGTACAA GGATTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGAC ATTCACCATT 11664 || |||||| || ||||||| ||||||| || |||||||||| |||||||| | ||||||| || TGTTGTACAA GGGTTGTTAC ATCCTCCAGG TACCCTAAGT GAACCAGGGC ATTCACCGTT 511 TATATTAGCC GTACAATGAA TTGCATGGCA TTTCCCTCCA CTAGGATTGG TCGGGGCGAA 11724 |||||| || || || |||| ||| ||| || ||| || | ||| || | | ||| | || TATATTGGCT GTGCATTGAA TTGGATGACA TTTTCCAGGG CCAGGCTTAG TTGGGCCAAA 571 AGTCATTGGA ATATTAAATC CATCGACTAA AGAAATGTCC CAGAAATCTA GGTTGCTAAA 11784 || ||| || || || |||| |||| | | |||||| ||| || ||||||| |||| | ||| AGACATAGGG ATGTTGAATC CATCAATAAC AGAAATATCC CAAAAATCTA GGTTACCAAA 631 CTGGTCCAAG GCGTACTCGG CCAGGGTGTT TGGTGGTTTG CCCCACCCGG TACATTGCAA 11844 ||||| ||| ||||| || | | | |||||| ||||||||| ||||| || | || | || CTGGTTCAAA GCGTATTCAG CTAAGGTGTT TGGTGGTTTA CCCCATCCTT TGCAATCCAG 691 GACCCCACCA CAATCACCAG TCTGACATGA ACCTCTACCA GCACCATCAA AGTTGCAATT 11904 ||| |||||| |||||||||| |||| || | |||||| ||| |||||||||| |||||||||| GACTCCACCA CAATCACCAG TCTGGCACCA ACCTCTTCCA GCACCATCAA AGTTGCAATT 751 CGTACGACCC CATATACGTG CCATCTTAGT GCCCCTCGGT GCATTGATGA CCCATGTTTG 11964 ||||||||| || ||||||| |||| ||||| ||| || || | ||| | || AGTACGACCC CAAATACGTG CCATTTTAGT GCCAGGTGGG GCCCAAAACC ACCAACTCTG 811 GCCTCGATCA AGACGTCGAC CACCGCCTAT TGGGGTCGAC GCCGCCCAGA CGGTGTATGG 12024 |||| || |||||||||| |||| |||| ||| || |||||||| | ||||||| || ACCTCTCTCG AGACGTCGAC CACCTCCTAC GGGGACCGCT GCCGCCCAAA CGGTGTAGGG 871 ACAGTTGTTG CGTACCTC-G A-A-AGTGGC AGCATAAGTG TAAGTCACAA AAGCAAGAAG 12081 |||||||| | ||||| | | | || | |||||||| |||||||||| | ||||| || GCAGTTGTTA TGGACCTCAA ATACACCGGA ACCATAAGTG TAAGTCACAA AGGCAAGGAG 931 GAAGAAAACA AAAGAAGATC TCAAGTAGGC CATGTT 12117 || || || ||| ||| | |||||| ||| || AAAAAACACT AAACAAGTTG TCAAGTGACT CATTTT 967 hqPGS_C08HBa0235H18.1+_SGN-U314099- (11425 12117) ******************************************************************************** EST sequence 56 -strand 1013 n (File: SGN-U314100-) 1 TTTTTTTTTT TTTTTCAATT TAAAATTAAA ATACCATATA TAAGACAAAG CATCGATCAT 61 AGATTGTTAT TCAGATCTTA GCCACTTCAA ACAAACAAAT GTAAAAGAAA TGTGTACAAG 121 GCAAATTAAA GACAATGTCC ATCTTCAAAA CAAATTTAAC AAAAAAGAGA TTGGCTCAAC 181 TCAAGATTTC TACTTAATTA AGCCACTTCA AGAGTATTTG TAGGAATCTC CAATGGGAAA 241 TTTGTTGTTT CATTGTGAGT AGAGCCATAA GGACAAAACA TAACCTTGTA GTCTGTAGTC 301 CAACTCTGAC AAGTAAAAGT ACTTGTTGGA TCGTCTTGAG GATAACTATA GGCATCGGGA 361 CATCTTTGTT TGAAAAATCT TGACAAATCG GTAGGACCAC ATGGACCTTG AGTGCAACAA 421 TATTGTTGTC CTCCGAATGT AGTACAAGGG TTGTTACATC CTCCGGGTAC CCTAAGTGAA 481 CCAGGGCATT CACCGTTTAT ATTAGCAACA CATTGAATTG GATGACATTT TCCCGGCCCA 541 GGGTTAGTTG GGCCGAAAGA CATAGGGATG TTGAATCCAT CAATAACAGA AATGTCCCAG 601 AAATCTAAGT TGCTAAATTG ATTCAAAGCG TATTCAGCTA AGGTGTTTGG TGGTTTACCC 661 CATCCTTTGC ATTCCAAGAC TCCACCACAA TCACCGGTCT GGCACCAACC TCTACCAGCA 721 CCATCAAAAT TGCAATTAGT ACGACCCCAA ATACGTGCCA TTTTGGTGCC CGGTGGAGCC 781 CAAAACCACC AACTTTGACC TCTCTCGAGA CGTCGGCCAC CTCCTACGGG AGTCGCCGCT 841 GCCCATACGG TGTATGGACA GTTGTTATGG ACCTCAAATA CACCGGAAGC ATAAGTGTAA 901 GTCACAAAGG CAAGGAGAAA GAACACTAAA CAAGTTGTCA AATGACTCAT TTTAGAATAA 961 AAGAAGAATA TTTGGTTTGT TGATCAATTC GGCCGATTGG CCGCCAATCG CCC Predicted gene structure (within gDNA segment 6859 to 17532): Exon 1 11425 12105 ( 681 n); cDNA 258 941 ( 684 n); score: 0.804 Intron 1 12106 12762 ( 657 n); Pd: 0.055 (s: 0.84), Pa: 0.000 (s: 0.61) Exon 2 12763 12811 ( 49 n); cDNA 942 990 ( 49 n); score: 0.612 Intron 2 12812 13312 ( 501 n); Pd: 0.000 (s: 0.61), Pa: 0.927 (s: 0) Exon 3 13313 13329 ( 17 n); cDNA 991 1006 ( 16 n); score: 0.647 PPA cDNA 15 1 MATCH C08HBa0235H18.1+ SGN-U314100- 0.804 747 0.737 C PGS_C08HBa0235H18.1+_SGN-U314100- (11425 12105,12763 12811,13313 13329) Alignment (genomic DNA sequence = upper lines): AGTAACACCA TTAGGACAAA AAACAACCCT ATAATTTGTA CTACCACTAG GGCAAGTAAA 11484 |||| ||| | |||||||| | | |||| | || | |||| | | ||| | |||||||| AGTAGAGCCA TAAGGACAAA ACATAACCTT GTAGTCTGTA GTCCAACTCT GACAAGTAAA 317 TGTGCTAGTA GGATCATCTT GTGGGTAGCT ATACGCATCA GGACATCTTT GTTTGAAAAA 11544 || || || ||||| |||| | || || || ||| ||||| |||||||||| |||||||||| AGTACTTGTT GGATCGTCTT GAGGATAACT ATAGGCATCG GGACATCTTT GTTTGAAAAA 377 TCTCGACAAA TCAGTAGGGC CACATGGACC TTGTGTGCAA CAATATTGTT GTCCTCCGAA 11604 ||| |||||| || ||||| | |||||||||| ||| |||||| |||||||||| |||||||||| TCTTGACAAA TCGGTAGGAC CACATGGACC TTGAGTGCAA CAATATTGTT GTCCTCCGAA 437 CGTGGTACAA GGATTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGAC ATTCACCATT 11664 || |||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||| || TGTAGTACAA GGGTTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGGC ATTCACCGTT 497 TATATTAGCC GTACAATGAA TTGCATGGCA TTTCCCTCCA CTAGGATTGG TCGGGGCGAA 11724 ||||||||| ||| |||| ||| ||| || ||| || | ||| || | | ||| |||| TATATTAGCA ACACATTGAA TTGGATGACA TTTTCCCGGC CCAGGGTTAG TTGGGCCGAA 557 AGTCATTGGA ATATTAAATC CATCGACTAA AGAAATGTCC CAGAAATCTA GGTTGCTAAA 11784 || ||| || || || |||| |||| | | |||||||||| |||||||||| ||||||||| AGACATAGGG ATGTTGAATC CATCAATAAC AGAAATGTCC CAGAAATCTA AGTTGCTAAA 617 CTGGTCCAAG GCGTACTCGG CCAGGGTGTT TGGTGGTTTG CCCCACCCGG TACATTGCAA 11844 || | ||| ||||| || | | | |||||| ||||||||| ||||| || | |||| ||| TTGATTCAAA GCGTATTCAG CTAAGGTGTT TGGTGGTTTA CCCCATCCTT TGCATTCCAA 677 GACCCCACCA CAATCACCAG TCTGACATGA ACCTCTACCA GCACCATCAA AGTTGCAATT 11904 ||| |||||| |||||||| | |||| || | |||||||||| |||||||||| | |||||||| GACTCCACCA CAATCACCGG TCTGGCACCA ACCTCTACCA GCACCATCAA AATTGCAATT 737 CGTACGACCC CATATACGTG CCATCTTAGT GCCCCTCGGT GCATTGATGA CCCATGTTTG 11964 ||||||||| || ||||||| |||| || || |||| || || | ||| |||| AGTACGACCC CAAATACGTG CCATTTTGGT GCCCGGTGGA GCCCAAAACC ACCAACTTTG 797 GCCTCGATCA AGACGTCGAC CACCGCCTAT TGGGGTCGAC GCCGCCCAGA CGGTGTATGG 12024 |||| || |||||||| | |||| |||| || |||| | || ||||| | |||||||||| ACCTCTCTCG AGACGTCGGC CACCTCCTAC GGGAGTCGCC GCTGCCCATA CGGTGTATGG 857 ACAGTTGTTG CGTACCTC-G A-A-AGTGGC AGCATAAGTG TAAGTCACAA AAGCAAGAAG 12081 ||||||||| | ||||| | | | || |||||||||| |||||||||| | ||||| || ACAGTTGTTA TGGACCTCAA ATACACCGGA AGCATAAGTG TAAGTCACAA AGGCAAGGAG 917 GAAGAAAACA AAAGAAGATC TCAAGTAGGC CATGTTTGTG GAACTATTTT TTTAAATGTA 12141 ||||| || ||| ||| | |||| AAAGAACACT AAACAAGTTG TCAA...... .......... .......... .......... 941 AGTTGTTGGA TTTAGTGACA AATTGTTAGG GTGTTTATAT AGGGGTGTGG CGGCTTTTGA 12201 .......... .......... .......... .......... .......... .......... 941 AACTATGTAT ATTAATCACA AATATCAATA TCACAATTGA CTAATCAAAC GAATAATATT 12261 .......... .......... .......... .......... .......... .......... 941 GAAAAAATAC TTAAGTAAAG GTTGAGGTGG CTCAACATAT AAGAGCCGCC TAGTAATTAC 12321 .......... .......... .......... .......... .......... .......... 941 TCCATTACTT TATATAAAAA TAAATATTTA ATTATTATTT TTTTCAATTT CTTATTTAAT 12381 .......... .......... .......... .......... .......... .......... 941 ATTAAGGTAT TTTTGTCCTG ATTAAATTTA AATTTACAAA TTAATAGCAT TTTTTATAAG 12441 .......... .......... .......... .......... .......... .......... 941 ATTTTTTTAT TTTCAAGATT TACAAATTTT CATTTCTAAT TAAGAATCGA GAAATTTCGG 12501 .......... .......... .......... .......... .......... .......... 941 TCCGCTACAA TCCATATATG GATAACATAG GGACAAATTT ATTTGGTATA ACGTGATAAG 12561 .......... .......... .......... .......... .......... .......... 941 ACTTTTTCTT AACTTAATTA AAAGAAGTAA CCATTATTTT TCTTTCATTG ACAGAGTTTC 12621 .......... .......... .......... .......... .......... .......... 941 TTTTGTACTC CCATTAAATT ATTTTTCATT TTGTGTGATG TTTAAAATCA TAAATAAAAA 12681 .......... .......... .......... .......... .......... .......... 941 AAAATAATTT TATTAATTCA CTTTTTTAAA AAAGTTAAAA ATTTATAAAT AAATATGAAC 12741 .......... .......... .......... .......... .......... .......... 941 ACTTTCAAAA GAGTCAATTA CAAGAATAAT ATAAGAAAAA TAAATTAATA TTTTTTTATT 12801 | || | || | |||| || | | |||| ||| || | .......... .......... .ATGACTCAT TTTAGAATAA AAGAAGAATA TTTGGTTTGT 980 TACTAAAATA ATTAACTAAT ATAAAATCAA TGGAGTACTT ATCTTGTCAT TTTTTATTTC 12861 | | || | TGATCAATTC .......... .......... .......... .......... .......... 990 GTGTTCAAGT TTCACGCGTA TTATTTGGAG GCGAAATTTA TGGATCGCAA TCAATAAAAT 12921 .......... .......... .......... .......... .......... .......... 990 AAGGGAAGTT AATCTAATTA GGTAGCATCT AAAATCTCAA TTAAAAAAAC GAAAAATTAC 12981 .......... .......... .......... .......... .......... .......... 990 ATTAATGACG TATAAAAACT TCAAATAATT ACATGTTTTA TATTCAATTC AATTCAAGAA 13041 .......... .......... .......... .......... .......... .......... 990 ATATTATTCT CTTAAAATAT AATACAGCCC ATACCCTTTC CCATTGATTA AGGTTGATTA 13101 .......... .......... .......... .......... .......... .......... 990 TTTTTGCTTA ATACATATTA AATCAGTATT ATATATTATA TATTGTATTG ATATCATTAA 13161 .......... .......... .......... .......... .......... .......... 990 AATTTATAAT TTCATTTAAT TGATACTAAA TCAAATATAT GTATATATAT ATATATTGCC 13221 .......... .......... .......... .......... .......... .......... 990 TATGTATTAT CACTGGCAAC CTAAGATCTA TTTGTTATTA ATTTTCGTCG CAAATTTAAT 13281 .......... .......... .......... .......... .......... .......... 990 TATCATTAAT TATGGAGTTA ATTACTTGCA GTGACATTAT GGTCGCCA 13329 | | | | || ||||| .......... .......... .......... .GGCCGAT-T GGCCGCCA 1006 hqPGS_C08HBa0235H18.1+_SGN-U314100- (11425 12105) ******************************************************************************** EST sequence 44 -strand 934 n (File: SGN-U333796-) 1 TTTTTTGGGC CCCGACCCCA AAAATATTAG GGGTAGGTTC AGAAGGGCCC ACTCCCCTAA 61 AAACGTTTTT TTCCCCTTTA AGTGAAAGGC CCGTTTTTTA AAAAGGGATT TTTGTTCCCA 121 AAAGTGAACA AACACCCAAC CCCTTTGGGG TATATTTTTT TTATTAATAA GAGGTATTTG 181 CGCAATTTTG GGCCCATTTG GGTAAAAAAA ATAAGGGTTT TTTAAAAAAA ATTTTAAACG 241 GATATTTTTA ACAAAATATA TAAAAGGCTT AAAAATTTGC ACATTCGCCC ATTAAGGGTT 301 GGAAAACTTT TTGGGAAGGG CATTCGGTGC GGGCCTCTTT GGCTATTACG CCAACTGGCG 361 AAAAGGGGAT GTGCTGCAAG GCGATTAAGT TGGGTAACGC CAGGGTTTTC CCAGTCACGA 421 CGTTGTAAAA CGACGGCCAG TGAATTGTAA TACGACTCAC TATAGGGCGA ATTGGGTACC 481 GGGCCCCCCC TCGAGGTTTT TTTTTTTTTT TTTTTTTTTT TTTGTTCTTT TTTTTTTTTT 541 TTTTNNAAGC AGACCGTTTA AGATGCTTAT TATTTTGGTA ATTTTTTCAT ACCATTCAAT 601 TTGTAGCAAA ATATGCTTTA TTGTGGCATC AATTATGGGC AAAAAACAAC CCTATAATTT 661 GTACTACCAC TAGGGCAAGT GAATAAGCTA GTAGGATCAT CTTGAGGGTA GCTATACGCA 721 TTAGGGCACC TTTGTTTGAA AAATCTCGAA AATTTTGTAG GACCACATGG GCCTTGAGTA 781 CAACAATATT GTTGTCCTCC GAACGTGGTA CAAGGGTTGT TACATCCTCC GGGTACCCTA 841 AGTGGACTAG GGCATATAAC CCCTCGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT 901 TCTAGAGCGT CCGCCACCGC GGTAGACTAC CTGG Predicted gene structure (within gDNA segment 4441 to 13145): Exon 1 11441 11652 ( 212 n); cDNA 640 851 ( 212 n); score: 0.915 MATCH C08HBa0235H18.1+ SGN-U333796- 0.915 212 0.227 C PGS_C08HBa0235H18.1+_SGN-U333796- (11441 11652) Alignment (genomic DNA sequence = upper lines): CAAAAAACAA CCCTATAATT TGTACTACCA CTAGGGCAAG TAAATGTGCT AGTAGGATCA 11500 |||||||||| |||||||||| |||||||||| |||||||||| | ||| ||| |||||||||| CAAAAAACAA CCCTATAATT TGTACTACCA CTAGGGCAAG TGAATAAGCT AGTAGGATCA 699 TCTTGTGGGT AGCTATACGC ATCAGGACAT CTTTGTTTGA AAAATCTCGA CAAATCAGTA 11560 ||||| |||| |||||||||| || ||| || |||||||||| |||||||||| || | ||| TCTTGAGGGT AGCTATACGC ATTAGGGCAC CTTTGTTTGA AAAATCTCGA AAATTTTGTA 759 GGGCCACATG GACCTTGTGT GCAACAATAT TGTTGTCCTC CGAACGTGGT ACAAGGATTG 11620 || ||||||| | ||||| || ||||||||| |||||||||| |||||||||| |||||| ||| GGACCACATG GGCCTTGAGT ACAACAATAT TGTTGTCCTC CGAACGTGGT ACAAGGGTTG 819 TTACATCCTC CGGGTACCCT AAGTGAACCA GG 11652 |||||||||| |||||||||| ||||| || | || TTACATCCTC CGGGTACCCT AAGTGGACTA GG 851 hqPGS_C08HBa0235H18.1+_SGN-U333796- (11441 11652) ******************************************************************************** EST sequence 77 -strand 798 n (File: SGN-U332003-) 1 TTTTTTTTTT TTGTTGCAAA CAATCACAAT ATGCAATTGT TTTTATCATC TAAGTCCTTT 61 GGAATATAAT GTAACAATCG ATGGATAATG TAATAGCTAT TGAAAACAAG TTATAAACTG 121 CAGTATAAAG AAATTGAAGC ACAAGACTTT CTTCTAGATG AAAATTTTTT TTAATCATAA 181 AGAACAAAAT CTCAAATTAT GTATATCACG TAACTAAACT CTAAATAAAT AATTAATTCA 241 ACGTACATTA AAATATAAAT AAGTAACTTA AATTTAAACT TTAAAATAAA ATAGAAGAGA 301 ACTCATTGCC TATTGTTTTA TCGAAAAAGG TGATTTTCGA AAAGAGTTTG TTTTTAGACT 361 TTTAGGAGTC GCCACTTAAT TTTTAAGAAA AATCAAGAAA ACTTCGTTTC TAAACAACTT 421 AAACAGAAAA ATTGTTTTGA AACATTTTAA GGGTTCAAGA TTCCTATTAG TATCTTAAGA 481 AGGTGTAAGG CACCTAAGAC ACTCCGTTAA ATACAGTTTT CCGACGATTA ACTTATTTGA 541 CTATTTTGTT TTAAAGACTT GCGAATTTTG AACTTCTTAA GATATCTAGG AAAACTTTAT 601 AAATTTGAAA CATTTATTGT TTTAAGATTC CGTTAACATT AAAACTTTTC GAACTTTAAT 661 TCTAAGTGAC TTTCAAATTC GAACGCCTTT AAAGTTTCGA TTTTTTAGTT TCGAGTTTGA 721 TAAAGCAAAA GGCGTTTGAT GGGGTTTGGA TTCTTCTAAT CCTAAGCTAA CGACATTTAA 781 AACAAAAACG TCAACAAA Predicted gene structure (within gDNA segment 12750 to 20446): Exon 1 13447 13493 ( 47 n); cDNA 152 197 ( 46 n); score: 0.723 Intron 1 13494 14664 (1171 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.58) Exon 2 14665 14721 ( 57 n); cDNA 198 253 ( 56 n); score: 0.579 Intron 2 14722 15938 (1217 n); Pd: 0.935 (s: 0.56), Pa: 0.000 (s: 0.58) Exon 3 15939 15987 ( 49 n); cDNA 254 302 ( 49 n); score: 0.582 Intron 3 15988 16609 ( 622 n); Pd: 0.000 (s: 0.58), Pa: 0.764 (s: 0.80) Exon 4 16610 17145 ( 536 n); cDNA 303 798 ( 496 n); score: 0.777 PPA cDNA 15 1 MATCH C08HBa0235H18.1+ SGN-U332003- 0.758 689 0.863 C PGS_C08HBa0235H18.1+_SGN-U332003- (13447 13493,14665 14721,15939 15987,16610 17145) Alignment (genomic DNA sequence = upper lines): TTCTAAAAGT TATTTTTTTT TTAAAAAAAA AGAACGATAA TTCAAATGCA CTGTTGTTTT 13506 ||||| | | | |||||| |||| | || ||||| | | |||||| TTCTAGATGA AAATTTTTT- TTAATCATAA AGAACAAAAT CTCAAAT... .......... 197 ATACATCTAA GACAAAAGTA CACATGAGAT GTAACTCTTA TTCCGGTCTT TAAGTTTGTT 13566 .......... .......... .......... .......... .......... .......... 197 ACGAACTCTT ATCAATAAAG TAAAAGTGAA TATTTAAAAA ACTGAGCTAT TAAGATTTTT 13626 .......... .......... .......... .......... .......... .......... 197 CATTACGGTA GAGATCAGTT GACTAATTGA GGCGATTTAA AATGAAGAAA CTCAAATTCA 13686 .......... .......... .......... .......... .......... .......... 197 CTTGGCCACT TCATCAGTAC TTGCAGGCAT CTCCAAGGGG AAATTTGGAT CAGCAACACC 13746 .......... .......... .......... .......... .......... .......... 197 ATTAGGACAA AAGACAACCC TATAGTTTGT ACTACCACCA GGGCAAGTAA ATGTGCTTGT 13806 .......... .......... .......... .......... .......... .......... 197 AGGATCGTCT TGTGGGTAGC TATAAGCATC GGGACATCTT TTCTTGAAAA ATTTGGACAA 13866 .......... .......... .......... .......... .......... .......... 197 CTCTGTAGGG CCACATGGAC CTTGGGTGCA ACAATATTGT TGTCCTCCAA ACGTGGTACA 13926 .......... .......... .......... .......... .......... .......... 197 AGGGTTGTTA CATCCTCCAG GTACCTTAAG GGCGCGAGGA CATTCACCAT TTATATTGGC 13986 .......... .......... .......... .......... .......... .......... 197 CGTGCAATGA ATTGCGTGAC ATTTTCCTCC ACTAGGTTTT GTTGGGGCAA AAGTCATTGG 14046 .......... .......... .......... .......... .......... .......... 197 AATATTAAAT CCATCGACTA AAGAAATGTC CCAAAAATCT AAGTTGCTAA ACTGGTCCAA 14106 .......... .......... .......... .......... .......... .......... 197 GGCGTACTCG GCTAGGGTGT TTGGGGGTTT GCCCCATCCG GTACACTGTA AGACTCCACC 14166 .......... .......... .......... .......... .......... .......... 197 ACAATCACCA GTCTGACATG TACCTCTGCC TGCAGCATTA AAGTTGCAAC CAGTACGACC 14226 .......... .......... .......... .......... .......... .......... 197 CCATATACGT GCCATCTTAG TTCCCCTCGG AGCATTGATG ACCCATGTTT GGCCTCGATT 14286 .......... .......... .......... .......... .......... .......... 197 GAGACGTCGA CCACCGCCTA TCGGAGTCGA TGCCGCCCAA ACGGTGTATG GACAGTTGTT 14346 .......... .......... .......... .......... .......... .......... 197 GCGTACCTCA ATAGTGGCAG CATAAGTATA AGTCACACAA AGAAGGAAGA AGAGAACAAA 14406 .......... .......... .......... .......... .......... .......... 197 AGAAGATGTC AAGTAGCCCA TGTTTGTTGA AATGTATATA TGAGGATAAC TTATTTGAAA 14466 .......... .......... .......... .......... .......... .......... 197 GCACTTTATA TAGGGGTGTG GCGGCTTTTG GCACTATGTA TATTAATCAT AAATAACAAT 14526 .......... .......... .......... .......... .......... .......... 197 ATCATATTTG ACAAAAAACG AATAATATTA AAATACGATA TAGTAAAGTG GAGGTGAAAA 14586 .......... .......... .......... .......... .......... .......... 197 AAGAAAAAAT GTATAAGAGC CGCCTAATAA ATAATAATTT TATAAATATA GTACAAGTTC 14646 .......... .......... .......... .......... .......... .......... 197 ACTTTATTTG GTGACAACTT TGTAACGTGA CGGAACTTAT TTCTCAAAAT AAATATTATT 14706 | ||| | | | || |||| | ||| || | | | | ||| .......... ........TA TGT-ATATCA CGTAACTAAA CTCTAAATAA ATAATTAATT 238 TAAAAAAAAA AAACAGCATC TTTCGTGACC AAAGTTTCTT TCTATATTTA TCAATTCCAT 14766 || | | || | CAACGTACAT TAAAA..... .......... .......... .......... .......... 253 TTTTTTTACT TTGACAGTAT TTTGTATACG TTTAAACATA AAAATTAGGT TTTTCATATT 14826 .......... .......... .......... .......... .......... .......... 253 ACTCGTATGG ATCGATTAAT TTCAAATATA CAAATCAATT CGATTAACTA TTATATACAG 14886 .......... .......... .......... .......... .......... .......... 253 TGGAAATGAT GTTTATGTGA CTCGTAATTG ATATTTTAAG CGATCAGAAT ATTTTAATGC 14946 .......... .......... .......... .......... .......... .......... 253 ATATCTATTA AGAAAATACC TATTGATGCA AAAGTCAACA AAATTATTTA ATTTATTTAT 15006 .......... .......... .......... .......... .......... .......... 253 TTTACGATCG AAGCATGAAT ACATTTACTA ATTAAAGTAA ATTGGGAGGA ATTGATGGAC 15066 .......... .......... .......... .......... .......... .......... 253 GAGTCATCAA GCTTATCAAA TGTCAATCAA CATTAAAATA ATGTTAGTTT ATGGCTGCTT 15126 .......... .......... .......... .......... .......... .......... 253 TTAAATGAAC AAGTGGATCA TGTACAATTG AGTAAAAAAT ATCTCCTATA AATATATATA 15186 .......... .......... .......... .......... .......... .......... 253 TCCCTCTAAA ACCAAATAAC ATAACACACA AATATAAACT TTAGATTCTT AAAAACAAAG 15246 .......... .......... .......... .......... .......... .......... 253 CTGAATTATA TGGAGGCAAA TAAGTCTATG GTGAAGTTGG TTGCTTTCTT GATAATTCTT 15306 .......... .......... .......... .......... .......... .......... 253 GTATCATCAT GTAATTAATT GACCATTTAT TTCTACTTTA TTAAATTTAT TCACATTTCT 15366 .......... .......... .......... .......... .......... .......... 253 TATTTTTATT TGTTAAAAGA AATTGATTAA TTATGTAAAT TATTTATGAA CAGGCTTTCA 15426 .......... .......... .......... .......... .......... .......... 253 ATCTCTCACT GCTCAAGATT TGGAAATCGA AGTTAGCGAT GGCTTAAATG TATTGCAAGT 15486 .......... .......... .......... .......... .......... .......... 253 ACATGATGTG TCTCAATCTT TTTGTCCAGG TTTGGTTTTT ATCTCTACCG TCCTTTTTGG 15546 .......... .......... .......... .......... .......... .......... 253 ATATATATAC ACGTACGACG TCCAACTAAA TCTAAATAAA TTTTTGGATC GAATCTTAGG 15606 .......... .......... .......... .......... .......... .......... 253 TCGATTATCA GGGTAATATC TATAGATTCG AGTGTTGGGG TTGAGGTCAT ATCCCAATTT 15666 .......... .......... .......... .......... .......... .......... 253 AAATGTCATG TTTCGAGTTG GGAGTTAGGG TCAGGTACTA GGTTAAATCC CATGCTCGGA 15726 .......... .......... .......... .......... .......... .......... 253 TACTGAGTCT GTTGTCGAGT TATGTCCTAA TTCACGTGTC GAAATCGAGT TCCGAATGAA 15786 .......... .......... .......... .......... .......... .......... 253 TTTTCGATCA GAAACTATTT TCCTACTCTC TAGCCAAATA TAAAAGATAT TTTCTAAAAA 15846 .......... .......... .......... .......... .......... .......... 253 ATATTTTCCT TCGTAGCAAA CACACCATAA TTAATTATTT TTTTCTCATA TAAAATAACT 15906 .......... .......... .......... .......... .......... .......... 253 TTTGATTCAT AGTTTTTTAG TCAATGCTCT TTTATAAATA ATTA-GTTGT ATTTTTTTTT 15965 |||||||| | || || |||| || .......... .......... .......... ..TATAAATA AGTAACTTAA ATTTAAACTT 281 TATAAATTAT AGGTGTGACA AAGGAAAGTT GGCCAGAACT TCTTGGAACA CCAGCTAAGT 16025 || |||| | | || | | TA-AAATAAA ATAGAAGAGA AC........ .......... .......... .......... 302 TTGCAAAGCA AATAATTCAA AAGGAAAATC CAAAATTAAC AAATGTTGAA ACTCTACTGA 16085 .......... .......... .......... .......... .......... .......... 302 ATGGTTCAGC TTTTACAGAA GATTTGAGAT GCAATAGAGT TCGTCTTTTT GTAAATTTAT 16145 .......... .......... .......... .......... .......... .......... 302 TGGACATTGT TGTACAAACT CCCAAAGTTG GTTGAACAAA ATTAATTGAT GTTATATCAT 16205 .......... .......... .......... .......... .......... .......... 302 ATGTATCTAG CCTCCACAAA AATAAATTGG AGATGTATGG TTAAAATTTC CACTATATTT 16265 .......... .......... .......... .......... .......... .......... 302 GGTGATAAAT AAATGTGGCT TTTAATATTA ATATGATTTT TGTTATATAT ACAATTACTT 16325 .......... .......... .......... .......... .......... .......... 302 CTACTATATA CCAGTGAAAT CTCATTAGCA TTGGGAAGGT GTTACGTACG CAACCTTATC 16385 .......... .......... .......... .......... .......... .......... 302 TTATGCTAAC TATCATCAGG GCGGTCTTAA CGCTATGCAA CTAAAGGGGG GTGGGGGGTA 16445 .......... .......... .......... .......... .......... .......... 302 TTTCTAAGAA AAAATTAATT ATAAATGTTA TTTTAAAAAT AATTATATGT ACTATGAGTG 16505 .......... .......... .......... .......... .......... .......... 302 GTATGATTTC TACAAGGAAA TTGCATATAT AATGAGTATA TCATCTCAAT TGTGACTTTG 16565 .......... .......... .......... .......... .......... .......... 302 ATGAAAAGTT CTGACTTTTA AGAAAATTTT GTCTTTTATG AAAGATAGTG ACATTTGTTT 16625 | || | |||||| .......... .......... .......... .......... ....TCATTG CCTATTGTTT 318 TATCGAAAAA GGGTGGTGAT TTTCGAAAAG AGTTTGTTTT TAGACTTTTA GGAGTCGCCA 16685 |||||||||| ||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGAAAAA -GGT---GAT TTTCGAAAAG AGTTTGTTTT TAGACTTTTA GGAGTCGCCA 374 CTTAATTTTT AAGAAAAATC AAGAAAACTT CGTTTCTAAA CAACTTAAAC AGAAAAAATT 16745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CTTAATTTTT AAGAAAAATC AAGAAAACTT CGTTTCTAAA CAACTTAAAC AG-AAAAATT 433 GTTTTGAAAC ATTTTAAGGG TTCGGGATTC CTATTAGTAT CTTAGGAAGG TGTAAGGCAC 16805 |||||||||| |||||||||| ||| ||||| |||||||||| |||| ||||| |||||||||| GTTTTGAAAC ATTTTAAGGG TTCAAGATTC CTATTAGTAT CTTAAGAAGG TGTAAGGCAC 493 CCAAAACACT CCGTTAACTT ACGGTTTTCC AATGATTAAC -TATTTGATT ATTTTTATTT 16864 | || ||||| ||||||| | || ||||||| | ||||||| ||||||| | | |||| ||| CTAAGACACT CCGTTAA-AT ACAGTTTTCC GACGATTAAC TTATTTGACT A-TTTTGTTT 551 TTAACCTTTG CAAATTTATT TGAACTTTTA ACATGACTTA CTTAGCCAAA CTTAGCCAAT 16924 | || ||| | || | || ||||||| | | | || || ||| ||| ||| || TAAAGACTTG CGAA--T-TT TGAACTTCTT A-A-GA--TA TCTAGGAAAA CTT-TATAAA 603 TTTGAAATAT TTATTGTTTA TCTTGCCAGT TTACGAAACC ATTTCAAAGT TAAGCTTACT 16984 ||||||| || |||||| | | || || || || | | | || || || ||| | TTTGAAACAT TTATTG--T- T-TT--AAGA TTCCGTTAAC A-TT--AA-- -AA-CTT-TT 649 CAAGGTTTTA TCTAAACAAG CCTTACGAAT TTGAAACAAT TTATCATTTA GAAGTTAGTT 17044 | | ||| | | | | | ||| | ||| | ||| | ||| ||| | | || || CGAACTTTAA T-TCTAAGTG ACTTTCAAAT TCGAACGCCT TTAAAGTTTC G-A-TT--TT 704 TTAAAAATTT TTAGGTTTGA TAAAATAACA GGCGTTCGAT GAGGGTTTGG AGTTTCCTAA 17104 || | ||| | |||||| |||| || | |||||| ||| | |||||||| | | | |||| TT---AGTTT CGA-GTTTGA TAAAGCAAAA GGCGTTTGAT G-GGGTTTGG ATTCTTCTAA 759 TCCTAAGCTA ACGGCATTGA AAACAAAATA AGATAAGCAA A 17145 |||||||||| ||| |||| | |||||||| | | | | ||| | TCCTAAGCTA ACGACATTTA AAACAAAA-A CG-TCAACAA A 798 hqPGS_C08HBa0235H18.1+_SGN-U332003- (13447 13493,14665 14721,15939 15987,16610 17145) ******************************************************************************** EST sequence 37 -strand 1014 n (File: SGN-U312654-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTCAAAT GCACTGTTGT TTTATACATC 61 TAAGACAAAA GTACACATGA GATGTAACTC TTATTCCGGT CTTTAAGTTT GTTACGAACT 121 CTTATCAATA AAGTAAAAGT GAATATTTAA AAAACTGAGC TATTAAGATT TTTCATTACG 181 GTAGAGATCA GTTGACTAAT TGAGGCGATT TAAAATGAAG AAACTCAAAT TCACTTGGCC 241 ACTTCATCAG TACTTGCAGG CATCTCCAAG GGGAAATTTG GATCAGCAAC ACCATTAGGA 301 CAAAAGACAA CCCTATAGTT TGTACTACCA CCAGGGCAAG TAAATGTGCT TGTAGGATCG 361 TCTTGTGGGT AGCTATAAGC ATCGGGACAT CTTTTCTTGA AAAATTTGGA CAACTCTGTA 421 GGGCCACATG GACCTTGGGT GCAACAATAT TGTTGTCCTC CAAACGTGGT ACAAGGGTTG 481 TTACATCCTC CAGGTACCTT AAGGGCGCGA GGACATTCAC CATTTATATT GGCCGTGCAA 541 TGAATTGCGT GACATTTTCC TCCACTAGGT TTTGTTGGGG CAAAAGTCAT TGGAATATTA 601 AATCCATCGA CTAAAGAAAT GTCCCAAAAA TCTAAGTTGC TAAACTGGTC CAAGGCGTAC 661 TCGGCTAGGG TGTTTGGGGG TTTGCCCCAT CCGGTACACT GTAAGACTCC ACCACAATCA 721 CCAGTCTGAC ATGTACCTCT GCCTGCAGCA TTAAAGTTGC AACCAGTACG ACCCCATATA 781 CGTGCCATCT TAGTTCCCCT CGGAGCATTG ATGACCCATG TTTGGCCTCG ATTGAGACGT 841 CGACCACCGC CTATCGGAGT CGATGCCGCC CAAACGGTGT ATGGACAGTT GTTGCGTACC 901 TCAATAGTGG CAGCATAAGT ATAAGTCACA CAAAGAAGGA AGAAGAGAAC AAAAGAAGAT 961 GTCAAGTAGC CCATGTTTGT TGAAATGTAT ATATCAATTC GGCCGATTTG GCCG Predicted gene structure (within gDNA segment 8209 to 15394): Exon 1 13456 14445 ( 990 n); cDNA 3 992 ( 990 n); score: 0.982 MATCH C08HBa0235H18.1+ SGN-U312654- 0.982 990 0.976 C PGS_C08HBa0235H18.1+_SGN-U312654- (13456 14445) Alignment (genomic DNA sequence = upper lines): TTATTTTTTT TTTAAAAAAA AAGAACGATA ATTCAAATGC ACTGTTGTTT TATACATCTA 13515 || ||||||| ||| | ||||||||| |||||||||| |||||||||| TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTCAAATGC ACTGTTGTTT TATACATCTA 62 AGACAAAAGT ACACATGAGA TGTAACTCTT ATTCCGGTCT TTAAGTTTGT TACGAACTCT 13575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAAAAGT ACACATGAGA TGTAACTCTT ATTCCGGTCT TTAAGTTTGT TACGAACTCT 122 TATCAATAAA GTAAAAGTGA ATATTTAAAA AACTGAGCTA TTAAGATTTT TCATTACGGT 13635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAATAAA GTAAAAGTGA ATATTTAAAA AACTGAGCTA TTAAGATTTT TCATTACGGT 182 AGAGATCAGT TGACTAATTG AGGCGATTTA AAATGAAGAA ACTCAAATTC ACTTGGCCAC 13695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATCAGT TGACTAATTG AGGCGATTTA AAATGAAGAA ACTCAAATTC ACTTGGCCAC 242 TTCATCAGTA CTTGCAGGCA TCTCCAAGGG GAAATTTGGA TCAGCAACAC CATTAGGACA 13755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCAGTA CTTGCAGGCA TCTCCAAGGG GAAATTTGGA TCAGCAACAC CATTAGGACA 302 AAAGACAACC CTATAGTTTG TACTACCACC AGGGCAAGTA AATGTGCTTG TAGGATCGTC 13815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGACAACC CTATAGTTTG TACTACCACC AGGGCAAGTA AATGTGCTTG TAGGATCGTC 362 TTGTGGGTAG CTATAAGCAT CGGGACATCT TTTCTTGAAA AATTTGGACA ACTCTGTAGG 13875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGGTAG CTATAAGCAT CGGGACATCT TTTCTTGAAA AATTTGGACA ACTCTGTAGG 422 GCCACATGGA CCTTGGGTGC AACAATATTG TTGTCCTCCA AACGTGGTAC AAGGGTTGTT 13935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACATGGA CCTTGGGTGC AACAATATTG TTGTCCTCCA AACGTGGTAC AAGGGTTGTT 482 ACATCCTCCA GGTACCTTAA GGGCGCGAGG ACATTCACCA TTTATATTGG CCGTGCAATG 13995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCCTCCA GGTACCTTAA GGGCGCGAGG ACATTCACCA TTTATATTGG CCGTGCAATG 542 AATTGCGTGA CATTTTCCTC CACTAGGTTT TGTTGGGGCA AAAGTCATTG GAATATTAAA 14055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCGTGA CATTTTCCTC CACTAGGTTT TGTTGGGGCA AAAGTCATTG GAATATTAAA 602 TCCATCGACT AAAGAAATGT CCCAAAAATC TAAGTTGCTA AACTGGTCCA AGGCGTACTC 14115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCGACT AAAGAAATGT CCCAAAAATC TAAGTTGCTA AACTGGTCCA AGGCGTACTC 662 GGCTAGGGTG TTTGGGGGTT TGCCCCATCC GGTACACTGT AAGACTCCAC CACAATCACC 14175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAGGGTG TTTGGGGGTT TGCCCCATCC GGTACACTGT AAGACTCCAC CACAATCACC 722 AGTCTGACAT GTACCTCTGC CTGCAGCATT AAAGTTGCAA CCAGTACGAC CCCATATACG 14235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTGACAT GTACCTCTGC CTGCAGCATT AAAGTTGCAA CCAGTACGAC CCCATATACG 782 TGCCATCTTA GTTCCCCTCG GAGCATTGAT GACCCATGTT TGGCCTCGAT TGAGACGTCG 14295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATCTTA GTTCCCCTCG GAGCATTGAT GACCCATGTT TGGCCTCGAT TGAGACGTCG 842 ACCACCGCCT ATCGGAGTCG ATGCCGCCCA AACGGTGTAT GGACAGTTGT TGCGTACCTC 14355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCGCCT ATCGGAGTCG ATGCCGCCCA AACGGTGTAT GGACAGTTGT TGCGTACCTC 902 AATAGTGGCA GCATAAGTAT AAGTCACACA AAGAAGGAAG AAGAGAACAA AAGAAGATGT 14415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGTGGCA GCATAAGTAT AAGTCACACA AAGAAGGAAG AAGAGAACAA AAGAAGATGT 962 CAAGTAGCCC ATGTTTGTTG AAATGTATAT 14445 |||||||||| |||||||||| |||||||||| CAAGTAGCCC ATGTTTGTTG AAATGTATAT 992 hqPGS_C08HBa0235H18.1+_SGN-U312654- (13456 14445) ******************************************************************************** EST sequence 40 -strand 709 n (File: SGN-U312655-) 1 TTTTNTTTTT TTTTTTTTTN NTTTTTTTTC CAAATGCACT GTTGTTTTAT CCTTTTAGGC 61 CAAAAGTCCC CATGAGATGT AATTCTTATT CCGTTCTTTA AGTTTGTTAC GAATTCTTAT 121 CAATAAAGTA AAAGGGAATA TTTAAAAAAC TGAGCTATTA AGATTTTTCA TTACGGTAGA 181 GATCAGTTGA CTAATTGAGG CGATTTAAAA TGAAGAAACT CAAATTCACT TGGCCACTTC 241 ATCAGTACTT GCAGGCATCT CCAAGGGGAA ATTTGGATCA GCAACACCAT TAGGACAAAA 301 GACAACCCTA TAGTTTGTAC TACCACCAGG GCAAGTAAAT GTGCTTGTAG GATCGTCTTG 361 TGGGTAGCTA TAAGCATCGG GACATCTTTT CTTGAAAAAT TTGGACAACT ATGTAGGGCC 421 ACATGGACCT TGGGTGCAAC AATATTGTTG TCCTCCAAAC GTGGTACAAG GGCCGTTACA 481 TCCTCCCGGT ACCCTATGGG CGCGCGGACA TTCACCATTT ATATCGGCCG TGCAATGAAT 541 TGCGTGACAT TTTCCTCCAA TAGGTTATGA CGGGGCAAAA GTCAATGGAT TATCAAATCC 601 ATCGCCTGAA GAAATCTTCC TCAAATTTAA GTTGATAAAT TGGTGCAAGG GGTATTCGGC 661 TACGGTGTAA GGGGGTTTGC CCCATCCGGT ACACTGTAAG ACTCCACCA Predicted gene structure (within gDNA segment 12003 to 14767): Exon 1 13489 14167 ( 679 n); cDNA 31 709 ( 679 n); score: 0.940 PPA cDNA 19 1 MATCH C08HBa0235H18.1+ SGN-U312655- 0.940 679 0.958 C PGS_C08HBa0235H18.1+_SGN-U312655- (13489 14167) Alignment (genomic DNA sequence = upper lines): CAAATGCACT GTTGTTTTAT ACATCTAAGA CAAAAGTACA CATGAGATGT AACTCTTATT 13548 |||||||||| |||||||||| | | || | ||||||| | |||||||||| || ||||||| CAAATGCACT GTTGTTTTAT CCTTTTAGGC CAAAAGTCCC CATGAGATGT AATTCTTATT 90 CCGGTCTTTA AGTTTGTTAC GAACTCTTAT CAATAAAGTA AAAGTGAATA TTTAAAAAAC 13608 ||| |||||| |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| CCGTTCTTTA AGTTTGTTAC GAATTCTTAT CAATAAAGTA AAAGGGAATA TTTAAAAAAC 150 TGAGCTATTA AGATTTTTCA TTACGGTAGA GATCAGTTGA CTAATTGAGG CGATTTAAAA 13668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCTATTA AGATTTTTCA TTACGGTAGA GATCAGTTGA CTAATTGAGG CGATTTAAAA 210 TGAAGAAACT CAAATTCACT TGGCCACTTC ATCAGTACTT GCAGGCATCT CCAAGGGGAA 13728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAACT CAAATTCACT TGGCCACTTC ATCAGTACTT GCAGGCATCT CCAAGGGGAA 270 ATTTGGATCA GCAACACCAT TAGGACAAAA GACAACCCTA TAGTTTGTAC TACCACCAGG 13788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGATCA GCAACACCAT TAGGACAAAA GACAACCCTA TAGTTTGTAC TACCACCAGG 330 GCAAGTAAAT GTGCTTGTAG GATCGTCTTG TGGGTAGCTA TAAGCATCGG GACATCTTTT 13848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGTAAAT GTGCTTGTAG GATCGTCTTG TGGGTAGCTA TAAGCATCGG GACATCTTTT 390 CTTGAAAAAT TTGGACAACT CTGTAGGGCC ACATGGACCT TGGGTGCAAC AATATTGTTG 13908 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTTGAAAAAT TTGGACAACT ATGTAGGGCC ACATGGACCT TGGGTGCAAC AATATTGTTG 450 TCCTCCAAAC GTGGTACAAG GGTTGTTACA TCCTCCAGGT ACCTTAAGGG CGCGAGGACA 13968 |||||||||| |||||||||| || |||||| |||||| ||| ||| || ||| |||| ||||| TCCTCCAAAC GTGGTACAAG GGCCGTTACA TCCTCCCGGT ACCCTATGGG CGCGCGGACA 510 TTCACCATTT ATATTGGCCG TGCAATGAAT TGCGTGACAT TTTCCTCCAC TAGGTTTTGT 14028 |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| |||||| || TTCACCATTT ATATCGGCCG TGCAATGAAT TGCGTGACAT TTTCCTCCAA TAGGTTATGA 570 TGGGGCAAAA GTCATTGGAA TATTAAATCC ATCGACTAAA GAAATGTCCC AAAAATCTAA 14088 ||||||||| |||| |||| ||| |||||| |||| || || ||||| | || |||| ||| CGGGGCAAAA GTCAATGGAT TATCAAATCC ATCGCCTGAA GAAATCTTCC TCAAATTTAA 630 GTTGCTAAAC TGGTCCAAGG CGTACTCGGC TAGGGTGTTT GGGGGTTTGC CCCATCCGGT 14148 |||| |||| |||| ||||| ||| ||||| || ||||| |||||||||| |||||||||| GTTGATAAAT TGGTGCAAGG GGTATTCGGC TACGGTGTAA GGGGGTTTGC CCCATCCGGT 690 ACACTGTAAG ACTCCACCA 14167 |||||||||| ||||||||| ACACTGTAAG ACTCCACCA 709 hqPGS_C08HBa0235H18.1+_SGN-U312655- (13489 14167) ******************************************************************************** EST sequence 51 -strand 892 n (File: SGN-U333798-) 1 ATAGTTGGTA CGNCAGGGTT TCCCAGTCAC GACGTGTTAA ACGACGCCCA GTGATGTAAT 61 ACGACTCACT ATAGGCGAAA TGGGTACCGG CCCCCCCTCG AGTTTTTTTT TTTTTTTTTT 121 TTTAAAAAAC TGAGCTATAA AGATTTTCAT TACGGTAGAG ATCAGTTGAC TAATGAGGCG 181 ATTAAAATGA GAACTNNCAA TTTCACTTGG CCACTTCATC AGTACTTGCA GGCATCTCAA 241 GGGGAATTNG GGATCAGCAC ACCCATTAGG ACAAAAGACA ACCCTATAGT TTGTACTACC 301 ACCAGGGGCA AGTAAATGTG CTTGTAGGAT CGTCTTGTGG GTAGCTATAA GCATCGGGAC 361 ATCTTTTCTT GAAAAATTTG GACAACTCTG TAGGGCCACA TGGACCTTGG GTGCAACAAT 421 ATTGTTGTCC TCCAAACGTG GTACAAGGGT TGTTACATCC TCCAGGTACC TTAAGGGCGC 481 GAGGACATTC ACCATTTATA TTGGCCGTGC AATGAATTGC GTGACATTTT CCTCCACTAG 541 GTTTTGTTGG GGCAAAAGTC ATTGGAATAT TAAATCCATC GACTAAAGAA ATGTCCCAAA 601 AATCTAAGTT GCTAAACTGG TCCAAGGCGT ACTCGGCTAG GGTGTTTGGG GGTTTGCCCC 661 ATCCGGTACA CTGTAAGACT CCACCACAAT CACCAGTCTG ACATGTACCT CTGCCTGCAG 721 CATTAAAGTT GCAACCAGTA CGACCCCATA TACGTGCCAT CTTAGTTCCC CTCGGAGCAT 781 TGATGACCCA TGTTTGGCCT CGATTGAGAC GTCGACCACC GCCTATCGGA GCCTGCAGCC 841 CGGGGGATCC ACTAGTTCTA GAGCGGCCGC CACCGCGGTG AGCTCCAGCT TT Predicted gene structure (within gDNA segment 11789 to 15522): Exon 1 13599 14311 ( 713 n); cDNA 121 830 ( 710 n); score: 0.971 MATCH C08HBa0235H18.1+ SGN-U333798- 0.971 713 0.799 C PGS_C08HBa0235H18.1+_SGN-U333798- (13599 14311) Alignment (genomic DNA sequence = upper lines): TTTAAAAAAC TGAGCTATTA AGATTTTTCA TTACGGTAGA GATCAGTTGA CTAATTGAGG 13658 |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| |||| ||||| TTTAAAAAAC TGAGCTATAA AGA-TTTTCA TTACGGTAGA GATCAGTTGA CTAA-TGAGG 178 CGATTTAAAA TGAAGAAACT CAAATTCACT TGGCCACTTC ATCAGTACTT GCAGGCATCT 13718 ||| |||||| ||| | ||| |||||| |||||||||| |||||||||| |||||||||| CGA-TTAAAA TGAGAACTNN CAATTTCACT TGGCCACTTC ATCAGTACTT GCAGGCATCT 237 CCAAGGGGAA ATTTGGATCA GCAACACCAT TAGGACAAAA GACAACCCTA TAGTTTGTAC 13778 ||||||||| | |||||| ||| |||| |||||||||| |||||||||| |||||||||| -CAAGGGGAA TTNGGGATCA GCACACCCAT TAGGACAAAA GACAACCCTA TAGTTTGTAC 296 TACCACCA-G GGCAAGTAAA TGTGCTTGTA GGATCGTCTT GTGGGTAGCT ATAAGCATCG 13837 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCACCAGG GGCAAGTAAA TGTGCTTGTA GGATCGTCTT GTGGGTAGCT ATAAGCATCG 356 GGACATCTTT TCTTGAAAAA TTTGGACAAC TCTGTAGGGC CACATGGACC TTGGGTGCAA 13897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACATCTTT TCTTGAAAAA TTTGGACAAC TCTGTAGGGC CACATGGACC TTGGGTGCAA 416 CAATATTGTT GTCCTCCAAA CGTGGTACAA GGGTTGTTAC ATCCTCCAGG TACCTTAAGG 13957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATTGTT GTCCTCCAAA CGTGGTACAA GGGTTGTTAC ATCCTCCAGG TACCTTAAGG 476 GCGCGAGGAC ATTCACCATT TATATTGGCC GTGCAATGAA TTGCGTGACA TTTTCCTCCA 14017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCGAGGAC ATTCACCATT TATATTGGCC GTGCAATGAA TTGCGTGACA TTTTCCTCCA 536 CTAGGTTTTG TTGGGGCAAA AGTCATTGGA ATATTAAATC CATCGACTAA AGAAATGTCC 14077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGGTTTTG TTGGGGCAAA AGTCATTGGA ATATTAAATC CATCGACTAA AGAAATGTCC 596 CAAAAATCTA AGTTGCTAAA CTGGTCCAAG GCGTACTCGG CTAGGGTGTT TGGGGGTTTG 14137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATCTA AGTTGCTAAA CTGGTCCAAG GCGTACTCGG CTAGGGTGTT TGGGGGTTTG 656 CCCCATCCGG TACACTGTAA GACTCCACCA CAATCACCAG TCTGACATGT ACCTCTGCCT 14197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCATCCGG TACACTGTAA GACTCCACCA CAATCACCAG TCTGACATGT ACCTCTGCCT 716 GCAGCATTAA AGTTGCAACC AGTACGACCC CATATACGTG CCATCTTAGT TCCCCTCGGA 14257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCATTAA AGTTGCAACC AGTACGACCC CATATACGTG CCATCTTAGT TCCCCTCGGA 776 GCATTGATGA CCCATGTTTG GCCTCGATTG AGACGTCGAC CACCGCCTAT CGGA 14311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GCATTGATGA CCCATGTTTG GCCTCGATTG AGACGTCGAC CACCGCCTAT CGGA 830 hqPGS_C08HBa0235H18.1+_SGN-U333798- (13599 14311) ******************************************************************************** EST sequence 35 -strand 922 n (File: SGN-U312653-) 1 AAACAACATT TTTTTTTTTG TGATGATGTG ACTTTTATTC ATGTAATTAT ATTAGGTTTA 61 TTACAAGCCA ATTATATAAC TCGACTACTT CAAGCAATTT AAAAGAAAGT GACTCAATTT 121 TACTTAGCCT CTTCATCACT TGAGGGCATC TCCAAGGGGA AATTTGGGCT AGTAACACCA 181 TTAGGACAAA AAACAACCCT ATAATTTGTA CTACCACTAG GGCAAGTAAA TGTGCTAGTA 241 GGATCATCTT GTGGGTAGCT ATACGCATCA GGACATCTTT GTTTGAAAAA TCTCGACAAA 301 TCAGTAGGGC CACATGGACC TTGTGTGCAA CAATATTGTT GTCCTCCGAA CGTGGTACAA 361 GGATTGTTAC ATCCTCCGGG TACCCTAAGT GAACCAGGAC ATTCACCATT TATATTAGCC 421 GTACAATGAA TTGCATGGCA TTTCCCTCCA CTAGGATTGG TCGGGGCGAA AGTCATTGGA 481 ATATTAAATC CATCGACTAA AGAAATGTCC CAGAAATCTA GGTTGCTAAA CTGGTCCAAG 541 GCGTACTCGG CCAGGGTGTT TGGTGGTTTG CCCCACCCGG TACATTGCAA GACCCCACCA 601 CAATCACCAG TCTGACATGA ACCTCTACCA GCACCATCAA AGTTGCAATT CGTACGACCC 661 CATATACGTG CCATCTTAGT GCCCCTCGGT GCATTGATGA CCCATGTTTG GCCTCGATCA 721 AGACGTCGAC CACCGCCTAT TGGGGTCGAC GCCGCCCAGA CGGTGTATGG ACAGTTGTTG 781 CGTACCTCGA AAGTGGCAGC ATAAGTGTAA GTCACAAAAG CAAGAAGGAA GAAAACAAAA 841 GAAGATCTCA AGTAGGCCAT GTTTGTGGAA CTATTTTTTT AAATGTAAGT TGTTCAATTC 901 GGCCGATTGG CCGCCAATCG CC Predicted gene structure (within gDNA segment 11662 to 16727): Exon 1 13640 14427 ( 788 n); cDNA 76 860 ( 785 n); score: 0.886 PPA cDNA 21 9 MATCH C08HBa0235H18.1+ SGN-U312653- 0.886 788 0.855 C PGS_C08HBa0235H18.1+_SGN-U312653- (13640 14427) Alignment (genomic DNA sequence = upper lines): ATCAGTTGAC TAATTGAGGC GATTTAAAAT GAAGAAACTC AAATTCACTT GGCCACTTCA 13699 || | | ||| || || | || |||||||| ||| |||| || || |||| ||| ||||| ATAACTCGAC TACTTCAAGC AATTTAAAAG AAAGTGACTC AATTTTACTT AGCCTCTTCA 135 TCAGTACTTG CAGGCATCTC CAAGGGGAAA TTTGGATCAG CAACACCATT AGGACAAAAG 13759 || ||||| |||||||| |||||||||| ||||| || ||||||||| ||||||||| TC---ACTTG AGGGCATCTC CAAGGGGAAA TTTGGGCTAG TAACACCATT AGGACAAAAA 192 ACAACCCTAT AGTTTGTACT ACCACCAGGG CAAGTAAATG TGCTTGTAGG ATCGTCTTGT 13819 |||||||||| | |||||||| ||||| |||| |||||||||| |||| ||||| ||| |||||| ACAACCCTAT AATTTGTACT ACCACTAGGG CAAGTAAATG TGCTAGTAGG ATCATCTTGT 252 GGGTAGCTAT AAGCATCGGG ACATCTTTTC TTGAAAAATT TGGACAACTC TGTAGGGCCA 13879 |||||||||| | ||||| || |||||||| ||||||||| | ||||| || ||||||||| GGGTAGCTAT ACGCATCAGG ACATCTTTGT TTGAAAAATC TCGACAAATC AGTAGGGCCA 312 CATGGACCTT GGGTGCAACA ATATTGTTGT CCTCCAAACG TGGTACAAGG GTTGTTACAT 13939 |||||||||| | |||||||| |||||||||| ||||| |||| |||||||||| ||||||||| CATGGACCTT GTGTGCAACA ATATTGTTGT CCTCCGAACG TGGTACAAGG ATTGTTACAT 372 CCTCCAGGTA CCTTAAGGGC GCGAGGACAT TCACCATTTA TATTGGCCGT GCAATGAATT 13999 ||||| |||| || |||| | | ||||||| |||||||||| |||| ||||| ||||||||| CCTCCGGGTA CCCTAAGTGA ACCAGGACAT TCACCATTTA TATTAGCCGT ACAATGAATT 432 GCGTGACATT TTCCTCCACT AGGTTTTGTT GGGGCAAAAG TCATTGGAAT ATTAAATCCA 14059 || || |||| | |||||||| ||| || || ||||| |||| |||||||||| |||||||||| GCATGGCATT TCCCTCCACT AGGATTGGTC GGGGCGAAAG TCATTGGAAT ATTAAATCCA 492 TCGACTAAAG AAATGTCCCA AAAATCTAAG TTGCTAAACT GGTCCAAGGC GTACTCGGCT 14119 |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| ||||||||| TCGACTAAAG AAATGTCCCA GAAATCTAGG TTGCTAAACT GGTCCAAGGC GTACTCGGCC 552 AGGGTGTTTG GGGGTTTGCC CCATCCGGTA CACTGTAAGA CTCCACCACA ATCACCAGTC 14179 |||||||||| | |||||||| ||| |||||| || || |||| | |||||||| |||||||||| AGGGTGTTTG GTGGTTTGCC CCACCCGGTA CATTGCAAGA CCCCACCACA ATCACCAGTC 612 TGACATGTAC CTCTGCCTGC AGCATTAAAG TTGCAACCAG TACGACCCCA TATACGTGCC 14239 ||||||| || |||| || || | ||| |||| |||||| | |||||||||| |||||||||| TGACATGAAC CTCTACCAGC ACCATCAAAG TTGCAATTCG TACGACCCCA TATACGTGCC 672 ATCTTAGTTC CCCTCGGAGC ATTGATGACC CATGTTTGGC CTCGATTGAG ACGTCGACCA 14299 |||||||| | ||||||| || |||||||||| |||||||||| |||||| || |||||||||| ATCTTAGTGC CCCTCGGTGC ATTGATGACC CATGTTTGGC CTCGATCAAG ACGTCGACCA 732 CCGCCTATCG GAGTCGATGC CGCCCAAACG GTGTATGGAC AGTTGTTGCG TACCTCAATA 14359 |||||||| | | ||||| || |||||| ||| |||||||||| |||||||||| |||||| | | CCGCCTATTG GGGTCGACGC CGCCCAGACG GTGTATGGAC AGTTGTTGCG TACCTCGAAA 792 GTGGCAGCAT AAGTATAAGT CACACAAAGA AGGAAGAAGA GAACAAAAGA AGATGTCAAG 14419 |||||||||| |||| ||||| |||| || | || | ||||| ||||||||| |||| ||||| GTGGCAGCAT AAGTGTAAGT CACAAAAGCA AGAAGGAAGA AAACAAAAGA AGATCTCAAG 852 TAGCCCAT 14427 ||| |||| TAGGCCAT 860 hqPGS_C08HBa0235H18.1+_SGN-U312653- (13640 14427) ******************************************************************************** EST sequence 48 -strand 832 n (File: SGN-U333797-) 1 TTTTTTTTTT TTTTGTGATG ATGTGACTTT TATTCATGTA ATTATATTAG GTTTATTACA 61 AGCCAATTAT ATAACTTCGA CTACTTCAAG CAATTTAAAA GAAAGTGACT CAATTTTACT 121 TAGCCTCTTC ATCACTTGAG GGCATCTCCA AGGGGAAATT TGGGCTAGTA ACACCATTAG 181 GACAAAAAAC AACCCTATAA TTTGTACTAC CACTAGGGCA AGTAAATGTG CTAGTAGGAT 241 CATCTTGTGG GTAGCTATAC GCATCAGGAC ATCTTTGTTT GAAAAATCTC GACAAATCAG 301 TAGGGCCACA TGGACCTTGT GTGCAACAAT ATTGTTGTCC TCCGAACGTG GTACAAGGAT 361 TGTTACATCC TCCGGGTACC CTAAGTGAAC CAGGACATTC ACCATTTATA TTAGCCGTAC 421 AATGAATTGC ATGGCATTTC CCTCCACTAG GATTGGTCGG GGCGAAAGTC ATTGGAATAT 481 TAAATCCATC GACTAAAGAA ATGTCCCAGA AATCTAGGTT GCTAAACTGG TCCAAGGCGT 541 ACTCGGCCAG GGTGTTTGGT GGTTTGCCCC ACCCGGTACA TTGCAAGACC CCACCACAAT 601 CACCAGTCTG ACATGAACCT CTACCATCAC CATCAAAGTT GCAATTCGTA CGACCCCATA 661 TACGTGCCAT CTTAGTGCCC CTCGGTGCAT TGATGACCCA TGTTTGGCCT CGATCAAGAC 721 GTCGACCACC GCCTATTGGG GTCGACGCCG CCCAGACGGT GTATGGACAG TTGTTGCGTA 781 CCTCGAAAGT GGCAGCATAA GTGTAAGTCA CAAAAGCAAG AAGGAAAAAA AA Predicted gene structure (within gDNA segment 11702 to 15867): Exon 1 13640 14402 ( 763 n); cDNA 71 830 ( 760 n); score: 0.881 PPA cDNA 16 1 MATCH C08HBa0235H18.1+ SGN-U333797- 0.881 763 0.917 C PGS_C08HBa0235H18.1+_SGN-U333797- (13640 14402) Alignment (genomic DNA sequence = upper lines): ATCAGTT-GA CTAATTGAGG CGATTTAAAA TGAAGAAACT CAAATTCACT TGGCCACTTC 13698 || | || || ||| || | | | |||||||| ||| ||| ||| || ||| | ||| |||| ATAACTTCGA CTACTTCAAG CAATTTAAAA GAAAGTGACT CAATTTTACT TAGCCTCTTC 130 ATCAGTACTT GCAGGCATCT CCAAGGGGAA ATTTGGATCA GCAACACCAT TAGGACAAAA 13758 ||| |||| | ||||||| |||||||||| |||||| | | |||||||| |||||||||| ATC---ACTT GAGGGCATCT CCAAGGGGAA ATTTGGGCTA GTAACACCAT TAGGACAAAA 187 GACAACCCTA TAGTTTGTAC TACCACCAGG GCAAGTAAAT GTGCTTGTAG GATCGTCTTG 13818 ||||||||| || ||||||| |||||| ||| |||||||||| ||||| |||| |||| ||||| AACAACCCTA TAATTTGTAC TACCACTAGG GCAAGTAAAT GTGCTAGTAG GATCATCTTG 247 TGGGTAGCTA TAAGCATCGG GACATCTTTT CTTGAAAAAT TTGGACAACT CTGTAGGGCC 13878 |||||||||| || ||||| | ||||||||| ||||||||| | ||||| | | |||||||| TGGGTAGCTA TACGCATCAG GACATCTTTG TTTGAAAAAT CTCGACAAAT CAGTAGGGCC 307 ACATGGACCT TGGGTGCAAC AATATTGTTG TCCTCCAAAC GTGGTACAAG GGTTGTTACA 13938 |||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| | |||||||| ACATGGACCT TGTGTGCAAC AATATTGTTG TCCTCCGAAC GTGGTACAAG GATTGTTACA 367 TCCTCCAGGT ACCTTAAGGG CGCGAGGACA TTCACCATTT ATATTGGCCG TGCAATGAAT 13998 |||||| ||| ||| |||| | | |||||| |||||||||| ||||| |||| | |||||||| TCCTCCGGGT ACCCTAAGTG AACCAGGACA TTCACCATTT ATATTAGCCG TACAATGAAT 427 TGCGTGACAT TTTCCTCCAC TAGGTTTTGT TGGGGCAAAA GTCATTGGAA TATTAAATCC 14058 ||| || ||| || ||||||| |||| || || ||||| ||| |||||||||| |||||||||| TGCATGGCAT TTCCCTCCAC TAGGATTGGT CGGGGCGAAA GTCATTGGAA TATTAAATCC 487 ATCGACTAAA GAAATGTCCC AAAAATCTAA GTTGCTAAAC TGGTCCAAGG CGTACTCGGC 14118 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| ATCGACTAAA GAAATGTCCC AGAAATCTAG GTTGCTAAAC TGGTCCAAGG CGTACTCGGC 547 TAGGGTGTTT GGGGGTTTGC CCCATCCGGT ACACTGTAAG ACTCCACCAC AATCACCAGT 14178 ||||||||| || ||||||| |||| ||||| ||| || ||| || ||||||| |||||||||| CAGGGTGTTT GGTGGTTTGC CCCACCCGGT ACATTGCAAG ACCCCACCAC AATCACCAGT 607 CTGACATGTA CCTCTGCCTG CAGCATTAAA GTTGCAACCA GTACGACCCC ATATACGTGC 14238 |||||||| | ||||| || || ||| ||| ||||||| |||||||||| |||||||||| CTGACATGAA CCTCTACCAT CACCATCAAA GTTGCAATTC GTACGACCCC ATATACGTGC 667 CATCTTAGTT CCCCTCGGAG CATTGATGAC CCATGTTTGG CCTCGATTGA GACGTCGACC 14298 ||||||||| |||||||| | |||||||||| |||||||||| ||||||| | |||||||||| CATCTTAGTG CCCCTCGGTG CATTGATGAC CCATGTTTGG CCTCGATCAA GACGTCGACC 727 ACCGCCTATC GGAGTCGATG CCGCCCAAAC GGTGTATGGA CAGTTGTTGC GTACCTCAAT 14358 ||||||||| || ||||| | ||||||| || |||||||||| |||||||||| ||||||| | ACCGCCTATT GGGGTCGACG CCGCCCAGAC GGTGTATGGA CAGTTGTTGC GTACCTCGAA 787 AGTGGCAGCA TAAGTATAAG TCACACAAAG AAGGAAGAAG AGAA 14402 |||||||||| ||||| |||| ||||| |||| | |||| | | || AGTGGCAGCA TAAGTGTAAG TCACA-AAAG CAAGAAGGAA AAAA 830 hqPGS_C08HBa0235H18.1+_SGN-U333797- (13640 14402) ******************************************************************************** EST sequence 24 +strand 2224 n (File: SGN-U316652+) 1 GAGGGAAAAT CAAGGGCTTA TAAAATTTCC GCTTAGAGTA GCTATTTCTA ATCAAAGAGA 61 CGATGGCTGA GGAAGCAGTA ATTTCAGTAA CAAGCCCTAC GGCGGAGCAA AACCAGAACT 121 CGGTGAACGC CACCATCGAA TCTGGTGTTC AGGGAGGCAC AGAATCAACT TGCAACAACA 181 ATAATAATAA TGCGGAGAGT TCTGCGGTTA CTTCTGATGT TAACCGTGAA AAATCTCTGG 241 AGTACGCGGA TGAGTTAGTG GTAAAAGGCT CCAAGGCATC TGAAGATGGA GATTATGGAG 301 AAGCCGTAGA ATGCTTTAGC CGTGCCCTGG AAATTCGGGT CGCACATTTT GGTGAACTTG 361 CTCCTGAATG TATCAATGCA TATTATAAAT ATGGGTGTGC TTTGCTGTAC AAAGCTCAGG 421 ATGAGGCTGA TCCTTTGGTT TCTTTGCCAA AAAAGGACAG CGGGTCTCAA CAAGATTCTA 481 ATAGAGACGG CTCTGTTAAA AGTGTTGTTA GTTGTGAGTC TTCTATTTCA AGCACTGCTG 541 AACCTGGTGG AAGTTCGAAT GGAAAGGAAA AAGTAGAAGA TGATGCTGCA GAGGAAAACG 601 AAGATGAAGG AGATGAAGAA GAAAGTGATG ACGAGGACTT GGCTGAAGGT GATGAGGATG 661 AAACTGACCT GGATTTAGCC TGGAAACTGT TAGATGTTGC AAGGGCAATT GCTGAAAAGC 721 ACGCTGGTGA CACAATGGAA AAAGTGGATG TATTATCAGC TTTGGCTGAG GTAGCCTTGG 781 AAAGAGAGGA TATTGAAACT TCCCTTAGTG ATTACCTGAA GGCATTATCC ATTTTGGAAC 841 GCTTGGTTGA ACCTGACAGT CGCCATATTG CTGCGCTCAA CTTTAGGATA TGCTTATGCC 901 TGGAAATTGG TTCTAAGCAT CAGGAAGCCA TACCATACTG CCAAAAAGCT ATTTTAACTT 961 GCAAGTCGCG GCTGCAGAGA CTCACTGAGG AAATAAAGCT TTTGTCAGAA TCAACAGAAA 1021 GATTAGCTAC TACCGATGTA GATCAGATTG CGAGACAGTC TTCCAGTATA TCACAGTCTG 1081 ACTCTGTATC TGCTAAAGAA GCTGAAGTTG AAACGCTCAC TGAACTTTCT GCAGAATTGG 1141 AGAAGAAGCT TGAAGATTTG CAGCAGTGTA TGTCAAATCC ATCATCTATC CTCTCCGATA 1201 TTTTGGGAAT GGTGTCTGCG AAAGCAAGAA GTCTAGAGAA TGCTGATGCT TCTGTAGCTG 1261 TGAACTCCTC ACAGATGGGT GTTGGTACCA GTGGTAGCGG AAGTTTTGAC TCTCCAACTG 1321 TTTCCACTGC CCACACAAAT GGTGCAGCTG GAATAACCCA TCTTGGAGTA GTTGGAAGAG 1381 GAGTCAAGAG GGTGCATCTA AACACAACCA CAGAATCTAG TCCAGCGAAA AAACCTGCAT 1441 CTGAGCAGCC GTCAGATAAT GGAGATGGCA CTGCCTCTTA AAGCATGTAT TGTTGGTGCT 1501 TCAATTAAGT TACGGTTAAC ATTTCAATTT AGCTTATTGA TAACATTGGT GGATTACCTT 1561 AGTTTGTTGC ATTCTCTGTT GGTTAGCTGG GAAGTGTGTT GCCACAGATC GCATCAGTTT 1621 ATTTCCTTAA ATTAATTACC TTGTATGCAT GTTGACTATT CAAAAAAAAA AAAAAAAAAT 1681 ATAAACTTTA GATTCTTAAA AACAAAGCTG AATTATATGG AGGCAAATAA GTCTATGGTG 1741 AAGTTGGTTG CTTTCTTGAT AATTCTTGTA TCATCATGCT TTCAATCTCT CACTGCTCAA 1801 GATTTGGAAA TCGAAGTTAG CGATGGCTTA AATGTATTGC AAGTACATGA TGTGTCTCAA 1861 TCTTTTTGTC CAGGTGTGAC AAAGGAAAGT TGGCCAGAAC TTCTTGGAAC ACCAGCTAAG 1921 TTTGCAAAGC AAATAATTCA AAAGGAAAAT CCAAAATTAA CAAATGTTGA AACTCTACTG 1981 AATGGTTCAG CTTTTACAGA AGATTTGAGA TGCAATAGAG TTCGTCTTTT TGTAAATTTA 2041 TTGGACATTG TTGTACAAAC TCCCAAAGTT GGTTGAACAA AATTAATTGA TGTTATATCA 2101 TATGTATCTA GCCTCCACAA AAATAAATTG GAGATGTATG GTTAAAATTT CCACTATATT 2161 TGGTGATAAA TAAATGTGGC TTTTAATATT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 2221 AAAA Predicted gene structure (within gDNA segment 2139 to 17141): Exon 1 2143 2153 ( 11 n); cDNA 1625 1635 ( 11 n); score: 0.727 Intron 1 2154 13946 (11793 n); Pd: 0.900 (s: 0), Pa: 0.898 (s: 0) Exon 2 13947 13967 ( 21 n); cDNA 1636 1656 ( 21 n); score: 0.571 Intron 2 13968 14702 ( 735 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 14703 14721 ( 19 n); cDNA 1657 1674 ( 18 n); score: 0.895 Intron 3 14722 15213 ( 492 n); Pd: 0.935 (s: 0), Pa: 0.000 (s: 0.98) Exon 4 15214 15316 ( 103 n); cDNA 1675 1777 ( 103 n); score: 0.990 Intron 4 15317 15419 ( 103 n); Pd: 0.747 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 15420 15515 ( 96 n); cDNA 1778 1873 ( 96 n); score: 1.000 Intron 5 15516 15977 ( 462 n); Pd: 0.717 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 15978 16295 ( 318 n); cDNA 1874 2191 ( 318 n); score: 1.000 PPA cDNA 2192 2224 MATCH C08HBa0235H18.1+ SGN-U316652+ 0.998 568 0.255 C PGS_C08HBa0235H18.1+_SGN-U316652+ (2143 2153,13947 13967,14703 14721,15214 15316,15420 15515,15978 16295) Alignment (genomic DNA sequence = upper lines): CCTCTAATTA GATATACTTA CTTAGCTTCC CCAACAATAT CGTCCTCGCC GATAGAATCA 2202 ||| ||||| CCTTAAATTA A......... .......... .......... .......... .......... 1635 CTGTCCATTA TCTTCAAGAA GAGTTCTTCA GCATCCTCAG AAATGGAGAA AACAAATGTT 2262 .......... .......... .......... .......... .......... .......... 1635 TCATTCCATT CTGGTTCACA TCCCTTCCCT ATGAAAATTT AACATTATAA ATATCGATTG 2322 .......... .......... .......... .......... .......... .......... 1635 ATCAAACTTC ATTTCATTTT TCTTAAAAAA AACATAGGTA ACTAATAACT AAGTAATAAT 2382 .......... .......... .......... .......... .......... .......... 1635 TAACCAAAGA TTATTAACAA ATGTACCTGA TGCAACAGTA CTCTTTTTCT CCTGAGATCT 2442 .......... .......... .......... .......... .......... .......... 1635 ATAAGTTAAG ATCACATATG GATCCATATC ATCTGTATCA CACAAAATAA CATTTTTTAA 2502 .......... .......... .......... .......... .......... .......... 1635 ATTAAAAAAT AAAATAAAAT ACAGAGTATC AATCAAATTA GCCAAGATGA TTATCGATTT 2562 .......... .......... .......... .......... .......... .......... 1635 TTGATTCATA TTCCTCGATT CTATTTTATT TGACATCGTT TGACTAGGCA TAGACCTAAA 2622 .......... .......... .......... .......... .......... .......... 1635 TGTCAACTTC ACATACTTTG ATTCAAAATT TAAAGTTTAC CACGAAGTCA AATTAATATA 2682 .......... .......... .......... .......... .......... .......... 1635 CATTGATAAG GTTTGGCCAT GAATTTTGAC AAATATCTGT TTGATCATGA AAATTTGATC 2742 .......... .......... .......... .......... .......... .......... 1635 CGATCTTCAA ATAATTCTCT ATTTTCCTAA ATAAAACGCA CATTCAAACA GGTGTTGTGT 2802 .......... .......... .......... .......... .......... .......... 1635 GAACACATAA ATTACATGTA GATCAACCTC TAATTCACAT AAGTAACAAT CGAAAATTAG 2862 .......... .......... .......... .......... .......... .......... 1635 GTTGATTAAG AAAACATCAA ATGTAATCGA AAGAAAAAAG AGATCTATAC ATTAATCTGA 2922 .......... .......... .......... .......... .......... .......... 1635 TCAGATCAAA ACAAATAAAT TAGAAAAAAA AACAAAAAAC TTACTGAGAA AATCAGTGTT 2982 .......... .......... .......... .......... .......... .......... 1635 TTCAAGGCCT TTAGCTCCAA CAAGTTGAAC TACAAGTTTT CCTCGTACCA TTTTCAATCA 3042 .......... .......... .......... .......... .......... .......... 1635 AACTCTTAGC AGATTCCCAG GAAAAAAAAA CAGATTCTCG CACGAATTTT CGGACAGAGA 3102 .......... .......... .......... .......... .......... .......... 1635 TCGTTTTCTT TTTTTTTTTT TTTGTTTCGA TGAAGAATAT GTTGAGCTGA TGTGTATTTA 3162 .......... .......... .......... .......... .......... .......... 1635 TATGTGAACA AAAGACCGGT TTAAAGTGGG GTTAGACCGG TGAGTGTAAA GTGAACCGGA 3222 .......... .......... .......... .......... .......... .......... 1635 CGGTTTAGGC GAAAATCACA TTTTAGACCA AAAAAGGCAA AAAAGAAAAT CACATTTTAC 3282 .......... .......... .......... .......... .......... .......... 1635 GCACCTAAAT TATTTCGAGT ATGAAAAACA TATTTAAACT AATAATAATA AGTTTGAGAA 3342 .......... .......... .......... .......... .......... .......... 1635 ATATACTTCA AGTAATATGT GATGTCGTGT GTATTACGTG TATACACACA TTTGATTATG 3402 .......... .......... .......... .......... .......... .......... 1635 TTAGATTGCG TTGGCGAAAA AAAAGCCACG TGGATTATTT TTTTTTTTGG ATCAAATGCG 3462 .......... .......... .......... .......... .......... .......... 1635 TCGGAGTGTG CATTTGGTCT GGTTAGAATT GAATTGTGTT TTTTTTTCTT CAAATTAATG 3522 .......... .......... .......... .......... .......... .......... 1635 AGTGGTAATA TTGTAGAAAT GAATCAATAG AATCTTCTTC ATTTTAAGAT TTTAGGTTTC 3582 .......... .......... .......... .......... .......... .......... 1635 AATTATTCGT TTTTGTGACT GAAAAAAGGC TAATTCAGCA GCTTTTTGTT CAATTTCTCG 3642 .......... .......... .......... .......... .......... .......... 1635 TGCAGTCAAA TTCTCATCAG TACAGGTCAA GAGAATGGAC CCCTGGCCTC GGATGTCCAT 3702 .......... .......... .......... .......... .......... .......... 1635 ATAAAGAACA CGACAAACAT AAATATCCTC TTTCACTTCT ATTCTAACGA ACTGAATATC 3762 .......... .......... .......... .......... .......... .......... 1635 TTTTATAAGG AATCGGAGTA CTTAGGAACA TGTTTTATAC ATTTTCAATA ATTTAAATAT 3822 .......... .......... .......... .......... .......... .......... 1635 GATATTAAAA AAAAAAGATT GTTCAAATAT GTTTTGACAT TTTTAGCTTT TATTTTAATA 3882 .......... .......... .......... .......... .......... .......... 1635 AAATAGATTT AAAAAAAAGT ATCTTTGAAC TACGTGAAAT TCAACAAATG TCTTCTTCAA 3942 .......... .......... .......... .......... .......... .......... 1635 AAATGCCATC CTATTAATAT TCTTGTCCAA ACATATCCCT ACCATGAATA TTTTAGTCAA 4002 .......... .......... .......... .......... .......... .......... 1635 AAAATATCCT ATTACTACTT TTGAGTAAAA AATATCTTTT TAAAGTATTG TTTCTTTTCT 4062 .......... .......... .......... .......... .......... .......... 1635 GTTTAAACAA ATTCCCTTTT TAAGAGATAT TTGATATATA CCCTTTGGGC CTTGATGGTT 4122 .......... .......... .......... .......... .......... .......... 1635 GATGAGGTGA TCCAAGAAAT ATTTAGACTA TCATTTAATG CTTGTTTAAC AAACGAATAT 4182 .......... .......... .......... .......... .......... .......... 1635 TAAGAAAGTG ATTTAACATT TTTTCTTTAT AAGATTTACC GTTTGTTTCA AAAATAAATT 4242 .......... .......... .......... .......... .......... .......... 1635 TCGATTTCAC CGTTTAATAG ATTTGGTAAA AAAAGTGATG ATCGTAAATT TTTTTTTATG 4302 .......... .......... .......... .......... .......... .......... 1635 ATTTATTAAT ATCACTCCCT TTTAGTGATA TATCATACAT TTCTTATTTT TTTAAAATGG 4362 .......... .......... .......... .......... .......... .......... 1635 ATATTATGTG CAGATTATTA TCTCAAGTGG ACATATTATG ACCAAGCAAA ATTATTAGGT 4422 .......... .......... .......... .......... .......... .......... 1635 TTTGTATATG TTCATTGTAC ATAATAATTG TATATGCTTA TAGCCGCCTA TCTAGCTATA 4482 .......... .......... .......... .......... .......... .......... 1635 TCTTTATAAA AAAATATAAA TTATGGTTTT ATTAATATAT CAAGTGTCTA TATATACATA 4542 .......... .......... .......... .......... .......... .......... 1635 TATATATATA TATATTTATA ATATTGTCCA TAGTGTAAAA AGCCGCCATA CCCCTATATA 4602 .......... .......... .......... .......... .......... .......... 1635 AACCCCTAAT TTATTGTGTA AATATATCAA CAAACCAAAT ATTCTTCTTT TATTCTAAAA 4662 .......... .......... .......... .......... .......... .......... 1635 TGAGTCATTT GACAACTTGT TTAGTGTTCT TTCTCCTTGC CTTTGTGACT TACACTTATG 4722 .......... .......... .......... .......... .......... .......... 1635 CTTCCGGTGT ATTTGAGGTC CATAACAACT GTCCATACAC CGTATGGGCA GCGGCGACTC 4782 .......... .......... .......... .......... .......... .......... 1635 CCGTAGGAGG TGGCCGACGT CTCGAGAGAG GTCAAAGTTG GTGGTTTTGG GCTCCACCGG 4842 .......... .......... .......... .......... .......... .......... 1635 GCACCAAAAT GGCACGTATT TGGGGTCGTA CTAATTGCAA TTTTGATGGT GCTGGTAGAG 4902 .......... .......... .......... .......... .......... .......... 1635 GTTGGTGCCA GACCGGTGAT TGTGGTGGAG TCTTGGAATG CAAAGGATGG GGTAAACCAC 4962 .......... .......... .......... .......... .......... .......... 1635 CAAACACCTT AGCTGAATAC GCTTTGAATC AATTTAGCAA CTTAGATTTC TGGGACATTT 5022 .......... .......... .......... .......... .......... .......... 1635 CTGTTATTGA TGGATTCAAC ATCCCTATGT CTTTCGGCCC AACTAACCCT GGGCCGGGAA 5082 .......... .......... .......... .......... .......... .......... 1635 AATGTCATCC AATTCAATGT GTTGCTAATA TAAACGGTGA ATGCCCTGGT TCACTTAGGG 5142 .......... .......... .......... .......... .......... .......... 1635 TACCCGGAGG ATGTAACAAC CCTTGTACTA CATTCGGAGG ACAACAATAT TGTTGCACTC 5202 .......... .......... .......... .......... .......... .......... 1635 AAGGTCCATG TGGTCCTACC GATTTGTCAA GATTTTTCAA ACAAAGATGT CCCGATGCCT 5262 .......... .......... .......... .......... .......... .......... 1635 ATAGTTATCC TCAAGACGAT CCAACAAGTA CTTTTACTTG TCAGAGTTGG ACTACAGACT 5322 .......... .......... .......... .......... .......... .......... 1635 ACAAGGTTAT GTTTTGTCCT TATGGCTCTA CTCACAATGA AACAACAAAT TTCCCATTGG 5382 .......... .......... .......... .......... .......... .......... 1635 AGATTCCTAC AAATACTCTT GAAGTGGCTT AATTAAGTAG AAATCTTGAG TTGAGCCAAT 5442 .......... .......... .......... .......... .......... .......... 1635 CTCTTTTTTG TTAAATTTGT TTTGAAGATG GACATTGTCT TTAATTTGCC TTGTACACAT 5502 .......... .......... .......... .......... .......... .......... 1635 TTCTTTTACA TTTGTTTGTT TGAAGTGGCT AAGATCTGAA TAACAATCTA TGATCGATGC 5562 .......... .......... .......... .......... .......... .......... 1635 TTTGTCTTAT ATATGGTATT TTAATTTTAA ATTGAAATTA TATCTGGAGT ACAGTTTTTT 5622 .......... .......... .......... .......... .......... .......... 1635 TCTTAAAATT TTTAATTATA ATGAAAAAAA ATTAGTCTAG TTAATATATT AAAGTACCTA 5682 .......... .......... .......... .......... .......... .......... 1635 GATCTGAAAA TATAAAATTG TAGGGACAAC TCGTTACATG TCATAATATA AGTCAAACAG 5742 .......... .......... .......... .......... .......... .......... 1635 ATGGAAATAT TTTTTTATTG GCGGCTTTTG GAACATTTTC AAGTATACTA TAGTATATGA 5802 .......... .......... .......... .......... .......... .......... 1635 AAATTCATTA AAATTTTAAT AAGTGTTTAG ATTTGAATTT ATAAGTTTAA AGAAATAATA 5862 .......... .......... .......... .......... .......... .......... 1635 AATTCAATAT TAATTAAAAA GCTTAAAGAT TCGAACATTA AGTTAAACTG ATAATTAAAT 5922 .......... .......... .......... .......... .......... .......... 1635 GAGTCGATAT ACAAAAAAGA AAAAGAAAAA AGAAGAAGAT AATTTTATAT AAAAGTCAAC 5982 .......... .......... .......... .......... .......... .......... 1635 TTTTAAAAAT CACTTACCCC ATTAATATCT TCCTTCTAAA AGACGTTATC CTTTAGTATC 6042 .......... .......... .......... .......... .......... .......... 1635 TGAATTCATA ACTTGAAATA GCAAAAAAGG GCTTTCACTT TCAATTGCGA TTCAATGCCT 6102 .......... .......... .......... .......... .......... .......... 1635 AAGCTAAGAA TTCAACATTA TTTAAATATT GATATTGTAT TAAAATTCAT TACTTCCAAA 6162 .......... .......... .......... .......... .......... .......... 1635 ACTCTTTTAT TATAAAAAAA TAAAATAAAA TACAATTGGG CGTTCGTATT GCTTAAATAA 6222 .......... .......... .......... .......... .......... .......... 1635 TTGCAATGTT ACTTAAAAAA TTCTATTAAA ACAATTTAAG TTCTTTTATT CTGCCCAAGC 6282 .......... .......... .......... .......... .......... .......... 1635 AGTTACACGT TGTTGATTTC AGACTCCTCC GGTAGAGCCA ACAACCATTC AGTGAATTGT 6342 .......... .......... .......... .......... .......... .......... 1635 CTTGTGTTAC TAAGTTTCAA GTCGTTCACT GAATCCTTCA CGATGTTTTG GTGGCAGGTA 6402 .......... .......... .......... .......... .......... .......... 1635 CTAGTACATC TACCGATCAA AATCAAATCC AAAAACTCTT GCATGTTCCA AAATTAAACT 6462 .......... .......... .......... .......... .......... .......... 1635 CAAATATACA ATCATCTCAT TTAAACTCAA GAATATCTTA TTATGAACCA ACAAACAAAG 6522 .......... .......... .......... .......... .......... .......... 1635 ACGACCATGA TGACAACGAT AAAAAATCAA TACTCCCTCC GTCCAGAAAT ATTTGTCATG 6582 .......... .......... .......... .......... .......... .......... 1635 TTACGCTTAT CGAAAGTCAA TTTTGATTGA TTTCTAAAGG TAAATTAAAT CACATTAATT 6642 .......... .......... .......... .......... .......... .......... 1635 CGATACTTTA AACCAAAAAA ATTAAATATT CTAAAACAAT ATGAAAAGTA CTATAAATTA 6702 .......... .......... .......... .......... .......... .......... 1635 CAATCTTTTC ATATTAATAT GATAAAAAAA TGTATCTTCA AATGTTAGTC AAAGTTTTTA 6762 .......... .......... .......... .......... .......... .......... 1635 TAGTTTGAGT CTATAAATAG AAACCATAAC AAACAATATC GGACGGAGGA AACATAAAAC 6822 .......... .......... .......... .......... .......... .......... 1635 AAAAATCAAT ATCGAACAAA TTATTCAATC AATAACAAAA ATCATTGCTA GTTCTATATC 6882 .......... .......... .......... .......... .......... .......... 1635 TAGTAACCAA TTAGGGATAG ATTATTCAAA ACTTTGCATA TTAGAGATAG ATTAGTAACG 6942 .......... .......... .......... .......... .......... .......... 1635 AAATTCATAA CTAATTTCAA AATTCATTTT TCTCGTGTGA AACAAGACCT ACATAGCTTG 7002 .......... .......... .......... .......... .......... .......... 1635 TATCGAATAA AAAAAAAATT CAAACTTTTA AGGTTCCACT CATCTCTACG CCTACCCATT 7062 .......... .......... .......... .......... .......... .......... 1635 TGCTCAACTT TTTTGACTGT AGAATGCATG CACATTTTCA ATTAATTATT ATGTCCACTT 7122 .......... .......... .......... .......... .......... .......... 1635 GATAAATATG CTATAAATAA TTTAATATAA AAATCCACTA TATATATACG ACGGAAAAAA 7182 .......... .......... .......... .......... .......... .......... 1635 ATAATCAAGG GAAAAAAGGC AATTGTCTGT AAACAAAAAT TACAAATTTG TAATTCAAAA 7242 .......... .......... .......... .......... .......... .......... 1635 TTTTTAAGTT ATTTTATTTA TGAAAACATA ACCAATAAAA ATTATGAAGA GAATTCTCTA 7302 .......... .......... .......... .......... .......... .......... 1635 CTAACTAAAT TTCTCATGAA AAAATGTTCA AAAAAAATTA GGAAATTTTC CACAATTTTA 7362 .......... .......... .......... .......... .......... .......... 1635 GGTTTCATGC CCTGCCATGC ATTTTTCCGA TTTGTTGTAT ATACTAAACT AAATAATTTA 7422 .......... .......... .......... .......... .......... .......... 1635 AAATTAATAT ATAGTTAAAC ACAAAACTAA TAATACGTAT ATATCACTTA ATTAAAAAAT 7482 .......... .......... .......... .......... .......... .......... 1635 ATCTTCTCTT TTTTTTTTAA TCATTATAAA TATCATAATG TGTTAATGCA TAAATTTTCA 7542 .......... .......... .......... .......... .......... .......... 1635 AAATAGCAAA AAGTTGAACT GTGAAATATG ACTGGAGTGA ACAAAATATA TTACTTATAA 7602 .......... .......... .......... .......... .......... .......... 1635 TAGGCTGTAC TCATATTATA TTGGCGGCTT TTTTTTTCAA GTGGAGATAT TTTGGATACA 7662 .......... .......... .......... .......... .......... .......... 1635 ATTTTTTTTT TTAATTTTCT ATATATGTTT ATAACAAGTG CCAATATTTA TATGATTAAT 7722 .......... .......... .......... .......... .......... .......... 1635 GTCCATAGTG AAAAAAAGCC GCCATACCAC TATATAAACC CCTAGCTCGA TATGCAAATA 7782 .......... .......... .......... .......... .......... .......... 1635 TATCCTACAA CTTCTTATAC TAAAATGAGT CACTTGACAA CTTGTTTAGT GTTTTTTCTC 7842 .......... .......... .......... .......... .......... .......... 1635 CTTGCCTTTG TGACTTACAC TTATGGTTCC GGTGTATTTG AGGTCCATAA CAACTGCCCC 7902 .......... .......... .......... .......... .......... .......... 1635 TACACCGTTT GGGCGGCAGC GGTCCCCGTA GGAGGTGGTC GACGTCTCGA GAGAGGTCAG 7962 .......... .......... .......... .......... .......... .......... 1635 AGTTGGTGGT TTTGGGCCCC ACCTGGCACT AAAATGGCAC GTATTTGGGG TCGTACTAAT 8022 .......... .......... .......... .......... .......... .......... 1635 TGCAACTTTG ATGGTGCTGG AAGAGGTTGG TGCCAGACTG GTGATTGTGG TGGAGTCCTG 8082 .......... .......... .......... .......... .......... .......... 1635 GATTGCAAAG GATGGGGTAA ACCACCAAAC ACCTTAGCTG AATACGCTTT GAACCAGTTT 8142 .......... .......... .......... .......... .......... .......... 1635 GGTAACCTAG ATTTTTGGGA TATTTCTGTT ATTGATGGAT TCAACATCCC TATGTCTTTT 8202 .......... .......... .......... .......... .......... .......... 1635 GGCCCAACTA AGCCTGGCCC TGGAAAATGT CATCCAATTC AATGCACAGC CAATATAAAC 8262 .......... .......... .......... .......... .......... .......... 1635 GGTGAATGCC CTGGTTCACT TAGGGTACCT GGAGGATGTA ACAACCCTTG TACAACATTC 8322 .......... .......... .......... .......... .......... .......... 1635 GGAGGACAAC AATATTGTTG TAATCACGGT CCATGTGGTC CTACTGAATT GTCAAGATTT 8382 .......... .......... .......... .......... .......... .......... 1635 TTCAAACAAA GATGTCCTGA TGCCTATAGT TACCCTCAAG ACGATCCAAC TAGTACTTTT 8442 .......... .......... .......... .......... .......... .......... 1635 ACTTGTCAGA GTTGGACTAC AGACTACAAG ATAATGTTCT GTCCTTATGG CTCTACTCAC 8502 .......... .......... .......... .......... .......... .......... 1635 AATGAAACAA CAAATTTCCC ATTGGAGATG CCTACAAGTA CTCTTGAAGT TGCTTAATAA 8562 .......... .......... .......... .......... .......... .......... 1635 GTAGATTCAT CATGAGTGTA GCCACCTCTT TCTTGTTCAA AATGGTTGAG TTTTGTTCAT 8622 .......... .......... .......... .......... .......... .......... 1635 TACTTGTCTT TTGTATTATC CACATTTCTT TTAGTTTGTT ATCTTGAGGT GGCTAAGATT 8682 .......... .......... .......... .......... .......... .......... 1635 TCAATAACAT ATTGTACTTT AATTTGTCTT ACACATGATG TTCAAAATTC TCACACAAGA 8742 .......... .......... .......... .......... .......... .......... 1635 GTGCATTTGG AGTATCGTTT AATTTTGTCT TTTTAATTCC TAATTATCTA AGTCTTAAAC 8802 .......... .......... .......... .......... .......... .......... 1635 CTTAGACAAA AAAAGGAATG AAAAATAGTA TTGATAACAT TCTACCGTAA TCAGATCAAA 8862 .......... .......... .......... .......... .......... .......... 1635 AATATAAAAT TGTAGGGACA AGATAAACTA TTATAATTAC TATATAGGAT AGCTATCTTT 8922 .......... .......... .......... .......... .......... .......... 1635 ATAGGACATA ATAATTAGTC GAGGTGGAAA TCTTTTTTGT AGGCGGCTTT TAGAATATTT 8982 .......... .......... .......... .......... .......... .......... 1635 CATGCAAAGG TTAAGGTGGA GCCACGTAGA ATTAAGGGGT TTATTCAATT TTTTAAATAG 9042 .......... .......... .......... .......... .......... .......... 1635 ATAATTATTA ATTTTATTTA TATATAGTTA AAATTATTTT TAATGTATAT ACAGTGATTA 9102 .......... .......... .......... .......... .......... .......... 1635 ATTAATGAAT GAATTTTTTT TTTCTTTAAA TTGTTAGTGT GTTTATTTTC TCATATTTCA 9162 .......... .......... .......... .......... .......... .......... 1635 AAATCCTCTA ATGAAAATTA TTACTCCGCT ATTAATCATG CTCTTGATAT TCAACATTTG 9222 .......... .......... .......... .......... .......... .......... 1635 TATTGAGCTT GATAAATTTA AATTTGCATT CGAAAAATTT CACTTTGAAG GCAAAACACT 9282 .......... .......... .......... .......... .......... .......... 1635 TATTATATAT AATGAAAAGA AATTTACTCT CATGGCTCAA ACTCGATATA TCAAATTAAA 9342 .......... .......... .......... .......... .......... .......... 1635 AATTGAAAAC TAACATCCCA CCACAGCCCC TTTGCATATT TTCAGCACGT TATGGTGCAT 9402 .......... .......... .......... .......... .......... .......... 1635 ATTCCGTGAC TTTTATGCAA TCACTCCTGA TAATAAGAAG CAAAGTCCTT AGCACCATAA 9462 .......... .......... .......... .......... .......... .......... 1635 TATTCAATTC ATTTTAAAAT ATTTATCATG TTTTATTTGA AATAACTGAT CATTAACAAA 9522 .......... .......... .......... .......... .......... .......... 1635 ATATGTTCAA ATAATTTCAC TCTTTTTTTT CTTAAAACTT AACTTAATAA TTTAAATTCA 9582 .......... .......... .......... .......... .......... .......... 1635 CATTACGTAA ACTTTTTAAC TCCACGCCAT TATTATAAAA AAATATGTCA TGTGTCAAGT 9642 .......... .......... .......... .......... .......... .......... 1635 GGATATATAA TTAAAAGAAA AACGTATGTG TATCTACACT CAAAAAAGTC AAGAAAATGG 9702 .......... .......... .......... .......... .......... .......... 1635 GGGTATATGG AGATATTGGT GAGTGGGGTT TTTTATGTTA CTTTGGTGGT TAAATAATTA 9762 .......... .......... .......... .......... .......... .......... 1635 TTCATCATTA CTTACTATAT TGACAAAAGA ATATTATTTT CAAGAGTAAT GTTGTTAATT 9822 .......... .......... .......... .......... .......... .......... 1635 GTTTTAGGAC AACTTTCGCA TATAGCAAAT AAAAAATTTA TATTTGTGTG TTATAGCAAA 9882 .......... .......... .......... .......... .......... .......... 1635 ATTTGTATAA TTACGCTCCA TAGCAAACAT AAAACTGTAT AATTCACTAT AATATACAAT 9942 .......... .......... .......... .......... .......... .......... 1635 TGTATAATTT GCTGGCCTAT TTCGCCGCAA TTGTATAATT CGCTATCATA TTTCACTGCA 10002 .......... .......... .......... .......... .......... .......... 1635 ATTGTATAAT GCATATTGTA TAATTCTCTG CAATATTTGT ATAAAATTTA TTTTGCATAC 10062 .......... .......... .......... .......... .......... .......... 1635 AATTGAATCG AAGTAAAATG TATGTATATT GCATAATTAT AAGTGTATAG GAAAAAAATA 10122 .......... .......... .......... .......... .......... .......... 1635 TATGTTTTTC TCTCGCTTTA TACAAAAACA TAAACACAAT TTATACACTT CTGTTGTATA 10182 .......... .......... .......... .......... .......... .......... 1635 AAGCAAGAGA AAATTGTATT TCACTGCAAT TGTATAATTC GTTCGCCTTT TTCGCTGCAA 10242 .......... .......... .......... .......... .......... .......... 1635 TATTTGTATA AAATTTGCAT TTGTCTACAA TTGAATTGAA GTAAAATATT TGTAAATTGT 10302 .......... .......... .......... .......... .......... .......... 1635 ATAATTAAGT GTATAACACG AAGATATATG TTTTTGCATG TGTATATACA GTTTTCTCTC 10362 .......... .......... .......... .......... .......... .......... 1635 GCTTATACAA AACAGAAACA CAATTTATAC ACTTTTGTGT ATAAAGAGAG AGAGGCGACT 10422 .......... .......... .......... .......... .......... .......... 1635 GACAAACTTT GGCTAACGTT TGCTATGGTG CACAATTAAA TCAAATCATA GCTACTCCAT 10482 .......... .......... .......... .......... .......... .......... 1635 TTATTTTAGG TTATTAGTTT GCTATTATAT ACAATTATCC CATTATTTTA TCCCAATACA 10542 .......... .......... .......... .......... .......... .......... 1635 ATATTTAGTC ATTTCATTCC ATCAATTTCG GTGAAGTTCA AATCAATCGT TGTTTTAAAA 10602 .......... .......... .......... .......... .......... .......... 1635 GAGATTAGTA TTGATAAAGT CACGTTCTAC AATATTTTTT ATTTTTTTGA GTGGCGATAA 10662 .......... .......... .......... .......... .......... .......... 1635 ATTATTAATA TTATTTTTGA CAATTCATTT TATTCTTTAG AGTGCGATAT AATCAACTTG 10722 .......... .......... .......... .......... .......... .......... 1635 TTAATCTATT ATATCAAGTT AACAAGTTAT TAGAATCTTT TTCACTCTTA ATCCTCTAAA 10782 .......... .......... .......... .......... .......... .......... 1635 ATATGTAAAA CATGTTAATG ATAAAAAAAA AATAGTGAAT TTTCTACGTT TATAAATATA 10842 .......... .......... .......... .......... .......... .......... 1635 ATTTTTTTTA ATAAAAATAT AAATTTTGCT CAATTTAATC TTTTGGCATT GTGTCAAGTA 10902 .......... .......... .......... .......... .......... .......... 1635 GCACGTGCAG CTAACATCAT TTAGCTTGAA AATGTTCTAA GAGCCGCCTA TAAACAAATA 10962 .......... .......... .......... .......... .......... .......... 1635 TTTCCATCTA CTTTTGACTT TGCCCTAAAA TTGTGGATAA TAATTTCTAA TAAAATGGGA 11022 .......... .......... .......... .......... .......... .......... 1635 TTATTTTATT TTATATTATT TTAAGGTACT AGTTACTTTT GAGATTAATT TATTTTATTT 11082 .......... .......... .......... .......... .......... .......... 1635 TTATATTTTG TGATGGAACT TTTATCATAT AAAAAAATGA GATAAAATAA TCTCGTGAGA 11142 .......... .......... .......... .......... .......... .......... 1635 TGTTCTTATT TATCTTATCC AGTATATTAT AGTTTTTATG TTTTTAAACT GACTGATATT 11202 .......... .......... .......... .......... .......... .......... 1635 ATTCTTTTAT TTGACAAGTT AATACGTAAA TAACAAAATA TACATAAAAT AATATTCGAA 11262 .......... .......... .......... .......... .......... .......... 1635 ACAACATATT TGTGATGATG TGACTTTTAT TCATGTAATT ATATTAGGTT TATTACAAGC 11322 .......... .......... .......... .......... .......... .......... 1635 CAATTATATA ACTCGACTAC TTCAAGCAAT TTAAAAGAAA GTGACTCAAT TTTACTTAGC 11382 .......... .......... .......... .......... .......... .......... 1635 CTCTTCATCA CTTGAGGGCA TCTCCAAGGG GAAATTTGGG CTAGTAACAC CATTAGGACA 11442 .......... .......... .......... .......... .......... .......... 1635 AAAAACAACC CTATAATTTG TACTACCACT AGGGCAAGTA AATGTGCTAG TAGGATCATC 11502 .......... .......... .......... .......... .......... .......... 1635 TTGTGGGTAG CTATACGCAT CAGGACATCT TTGTTTGAAA AATCTCGACA AATCAGTAGG 11562 .......... .......... .......... .......... .......... .......... 1635 GCCACATGGA CCTTGTGTGC AACAATATTG TTGTCCTCCG AACGTGGTAC AAGGATTGTT 11622 .......... .......... .......... .......... .......... .......... 1635 ACATCCTCCG GGTACCCTAA GTGAACCAGG ACATTCACCA TTTATATTAG CCGTACAATG 11682 .......... .......... .......... .......... .......... .......... 1635 AATTGCATGG CATTTCCCTC CACTAGGATT GGTCGGGGCG AAAGTCATTG GAATATTAAA 11742 .......... .......... .......... .......... .......... .......... 1635 TCCATCGACT AAAGAAATGT CCCAGAAATC TAGGTTGCTA AACTGGTCCA AGGCGTACTC 11802 .......... .......... .......... .......... .......... .......... 1635 GGCCAGGGTG TTTGGTGGTT TGCCCCACCC GGTACATTGC AAGACCCCAC CACAATCACC 11862 .......... .......... .......... .......... .......... .......... 1635 AGTCTGACAT GAACCTCTAC CAGCACCATC AAAGTTGCAA TTCGTACGAC CCCATATACG 11922 .......... .......... .......... .......... .......... .......... 1635 TGCCATCTTA GTGCCCCTCG GTGCATTGAT GACCCATGTT TGGCCTCGAT CAAGACGTCG 11982 .......... .......... .......... .......... .......... .......... 1635 ACCACCGCCT ATTGGGGTCG ACGCCGCCCA GACGGTGTAT GGACAGTTGT TGCGTACCTC 12042 .......... .......... .......... .......... .......... .......... 1635 GAAAGTGGCA GCATAAGTGT AAGTCACAAA AGCAAGAAGG AAGAAAACAA AAGAAGATCT 12102 .......... .......... .......... .......... .......... .......... 1635 CAAGTAGGCC ATGTTTGTGG AACTATTTTT TTAAATGTAA GTTGTTGGAT TTAGTGACAA 12162 .......... .......... .......... .......... .......... .......... 1635 ATTGTTAGGG TGTTTATATA GGGGTGTGGC GGCTTTTGAA ACTATGTATA TTAATCACAA 12222 .......... .......... .......... .......... .......... .......... 1635 ATATCAATAT CACAATTGAC TAATCAAACG AATAATATTG AAAAAATACT TAAGTAAAGG 12282 .......... .......... .......... .......... .......... .......... 1635 TTGAGGTGGC TCAACATATA AGAGCCGCCT AGTAATTACT CCATTACTTT ATATAAAAAT 12342 .......... .......... .......... .......... .......... .......... 1635 AAATATTTAA TTATTATTTT TTTCAATTTC TTATTTAATA TTAAGGTATT TTTGTCCTGA 12402 .......... .......... .......... .......... .......... .......... 1635 TTAAATTTAA ATTTACAAAT TAATAGCATT TTTTATAAGA TTTTTTTATT TTCAAGATTT 12462 .......... .......... .......... .......... .......... .......... 1635 ACAAATTTTC ATTTCTAATT AAGAATCGAG AAATTTCGGT CCGCTACAAT CCATATATGG 12522 .......... .......... .......... .......... .......... .......... 1635 ATAACATAGG GACAAATTTA TTTGGTATAA CGTGATAAGA CTTTTTCTTA ACTTAATTAA 12582 .......... .......... .......... .......... .......... .......... 1635 AAGAAGTAAC CATTATTTTT CTTTCATTGA CAGAGTTTCT TTTGTACTCC CATTAAATTA 12642 .......... .......... .......... .......... .......... .......... 1635 TTTTTCATTT TGTGTGATGT TTAAAATCAT AAATAAAAAA AAATAATTTT ATTAATTCAC 12702 .......... .......... .......... .......... .......... .......... 1635 TTTTTTAAAA AAGTTAAAAA TTTATAAATA AATATGAACA CTTTCAAAAG AGTCAATTAC 12762 .......... .......... .......... .......... .......... .......... 1635 AAGAATAATA TAAGAAAAAT AAATTAATAT TTTTTTATTT ACTAAAATAA TTAACTAATA 12822 .......... .......... .......... .......... .......... .......... 1635 TAAAATCAAT GGAGTACTTA TCTTGTCATT TTTTATTTCG TGTTCAAGTT TCACGCGTAT 12882 .......... .......... .......... .......... .......... .......... 1635 TATTTGGAGG CGAAATTTAT GGATCGCAAT CAATAAAATA AGGGAAGTTA ATCTAATTAG 12942 .......... .......... .......... .......... .......... .......... 1635 GTAGCATCTA AAATCTCAAT TAAAAAAACG AAAAATTACA TTAATGACGT ATAAAAACTT 13002 .......... .......... .......... .......... .......... .......... 1635 CAAATAATTA CATGTTTTAT ATTCAATTCA ATTCAAGAAA TATTATTCTC TTAAAATATA 13062 .......... .......... .......... .......... .......... .......... 1635 ATACAGCCCA TACCCTTTCC CATTGATTAA GGTTGATTAT TTTTGCTTAA TACATATTAA 13122 .......... .......... .......... .......... .......... .......... 1635 ATCAGTATTA TATATTATAT ATTGTATTGA TATCATTAAA ATTTATAATT TCATTTAATT 13182 .......... .......... .......... .......... .......... .......... 1635 GATACTAAAT CAAATATATG TATATATATA TATATTGCCT ATGTATTATC ACTGGCAACC 13242 .......... .......... .......... .......... .......... .......... 1635 TAAGATCTAT TTGTTATTAA TTTTCGTCGC AAATTTAATT ATCATTAATT ATGGAGTTAA 13302 .......... .......... .......... .......... .......... .......... 1635 TTACTTGCAG TGACATTATG GTCGCCACTA AAAATATTCA GTGTCGATTT AAAGAGGCTC 13362 .......... .......... .......... .......... .......... .......... 1635 ATATACATGA CAGCGTGAAA TGATTCTCGA GGCATTATCA ATACTTTTTT GTTTGTTTAT 13422 .......... .......... .......... .......... .......... .......... 1635 TGGTCTAATT TAGGCTTAAT ACTTTTCTAA AAGTTATTTT TTTTTTAAAA AAAAAGAACG 13482 .......... .......... .......... .......... .......... .......... 1635 ATAATTCAAA TGCACTGTTG TTTTATACAT CTAAGACAAA AGTACACATG AGATGTAACT 13542 .......... .......... .......... .......... .......... .......... 1635 CTTATTCCGG TCTTTAAGTT TGTTACGAAC TCTTATCAAT AAAGTAAAAG TGAATATTTA 13602 .......... .......... .......... .......... .......... .......... 1635 AAAAACTGAG CTATTAAGAT TTTTCATTAC GGTAGAGATC AGTTGACTAA TTGAGGCGAT 13662 .......... .......... .......... .......... .......... .......... 1635 TTAAAATGAA GAAACTCAAA TTCACTTGGC CACTTCATCA GTACTTGCAG GCATCTCCAA 13722 .......... .......... .......... .......... .......... .......... 1635 GGGGAAATTT GGATCAGCAA CACCATTAGG ACAAAAGACA ACCCTATAGT TTGTACTACC 13782 .......... .......... .......... .......... .......... .......... 1635 ACCAGGGCAA GTAAATGTGC TTGTAGGATC GTCTTGTGGG TAGCTATAAG CATCGGGACA 13842 .......... .......... .......... .......... .......... .......... 1635 TCTTTTCTTG AAAAATTTGG ACAACTCTGT AGGGCCACAT GGACCTTGGG TGCAACAATA 13902 .......... .......... .......... .......... .......... .......... 1635 TTGTTGTCCT CCAAACGTGG TACAAGGGTT GTTACATCCT CCAGGTACCT TAAGGGCGCG 13962 ||||| | || | .......... .......... .......... .......... ....TTACCT TGTATGCATG 1651 AGGACATTCA CCATTTATAT TGGCCGTGCA ATGAATTGCG TGACATTTTC CTCCACTAGG 14022 ||| TTGAC..... .......... .......... .......... .......... .......... 1656 TTTTGTTGGG GCAAAAGTCA TTGGAATATT AAATCCATCG ACTAAAGAAA TGTCCCAAAA 14082 .......... .......... .......... .......... .......... .......... 1656 ATCTAAGTTG CTAAACTGGT CCAAGGCGTA CTCGGCTAGG GTGTTTGGGG GTTTGCCCCA 14142 .......... .......... .......... .......... .......... .......... 1656 TCCGGTACAC TGTAAGACTC CACCACAATC ACCAGTCTGA CATGTACCTC TGCCTGCAGC 14202 .......... .......... .......... .......... .......... .......... 1656 ATTAAAGTTG CAACCAGTAC GACCCCATAT ACGTGCCATC TTAGTTCCCC TCGGAGCATT 14262 .......... .......... .......... .......... .......... .......... 1656 GATGACCCAT GTTTGGCCTC GATTGAGACG TCGACCACCG CCTATCGGAG TCGATGCCGC 14322 .......... .......... .......... .......... .......... .......... 1656 CCAAACGGTG TATGGACAGT TGTTGCGTAC CTCAATAGTG GCAGCATAAG TATAAGTCAC 14382 .......... .......... .......... .......... .......... .......... 1656 ACAAAGAAGG AAGAAGAGAA CAAAAGAAGA TGTCAAGTAG CCCATGTTTG TTGAAATGTA 14442 .......... .......... .......... .......... .......... .......... 1656 TATATGAGGA TAACTTATTT GAAAGCACTT TATATAGGGG TGTGGCGGCT TTTGGCACTA 14502 .......... .......... .......... .......... .......... .......... 1656 TGTATATTAA TCATAAATAA CAATATCATA TTTGACAAAA AACGAATAAT ATTAAAATAC 14562 .......... .......... .......... .......... .......... .......... 1656 GATATAGTAA AGTGGAGGTG AAAAAAGAAA AAATGTATAA GAGCCGCCTA ATAAATAATA 14622 .......... .......... .......... .......... .......... .......... 1656 ATTTTATAAA TATAGTACAA GTTCACTTTA TTTGGTGACA ACTTTGTAAC GTGACGGAAC 14682 .......... .......... .......... .......... .......... .......... 1656 TTATTTCTCA AAATAAATAT TATTTAAAAA AAAAAAACAG CATCTTTCGT GACCAAAGTT 14742 |||| ||||| ||||||| | .......... .......... TATTCAAAAA AAAAAAA-A. .......... .......... 1674 TCTTTCTATA TTTATCAATT CCATTTTTTT TACTTTGACA GTATTTTGTA TACGTTTAAA 14802 .......... .......... .......... .......... .......... .......... 1674 CATAAAAATT AGGTTTTTCA TATTACTCGT ATGGATCGAT TAATTTCAAA TATACAAATC 14862 .......... .......... .......... .......... .......... .......... 1674 AATTCGATTA ACTATTATAT ACAGTGGAAA TGATGTTTAT GTGACTCGTA ATTGATATTT 14922 .......... .......... .......... .......... .......... .......... 1674 TAAGCGATCA GAATATTTTA ATGCATATCT ATTAAGAAAA TACCTATTGA TGCAAAAGTC 14982 .......... .......... .......... .......... .......... .......... 1674 AACAAAATTA TTTAATTTAT TTATTTTACG ATCGAAGCAT GAATACATTT ACTAATTAAA 15042 .......... .......... .......... .......... .......... .......... 1674 GTAAATTGGG AGGAATTGAT GGACGAGTCA TCAAGCTTAT CAAATGTCAA TCAACATTAA 15102 .......... .......... .......... .......... .......... .......... 1674 AATAATGTTA GTTTATGGCT GCTTTTAAAT GAACAAGTGG ATCATGTACA ATTGAGTAAA 15162 .......... .......... .......... .......... .......... .......... 1674 AAATATCTCC TATAAATATA TATATCCCTC TAAAACCAAA TAACATAACA CACAAATATA 15222 | ||||||| .......... .......... .......... .......... .......... .AAAAATATA 1683 AACTTTAGAT TCTTAAAAAC AAAGCTGAAT TATATGGAGG CAAATAAGTC TATGGTGAAG 15282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTAGAT TCTTAAAAAC AAAGCTGAAT TATATGGAGG CAAATAAGTC TATGGTGAAG 1743 TTGGTTGCTT TCTTGATAAT TCTTGTATCA TCATGTAATT AATTGACCAT TTATTTCTAC 15342 |||||||||| |||||||||| |||||||||| |||| TTGGTTGCTT TCTTGATAAT TCTTGTATCA TCAT...... .......... .......... 1777 TTTATTAAAT TTATTCACAT TTCTTATTTT TATTTGTTAA AAGAAATTGA TTAATTATGT 15402 .......... .......... .......... .......... .......... .......... 1777 AAATTATTTA TGAACAGGCT TTCAATCTCT CACTGCTCAA GATTTGGAAA TCGAAGTTAG 15462 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCT TTCAATCTCT CACTGCTCAA GATTTGGAAA TCGAAGTTAG 1820 CGATGGCTTA AATGTATTGC AAGTACATGA TGTGTCTCAA TCTTTTTGTC CAGGTTTGGT 15522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CGATGGCTTA AATGTATTGC AAGTACATGA TGTGTCTCAA TCTTTTTGTC CAG....... 1873 TTTTATCTCT ACCGTCCTTT TTGGATATAT ATACACGTAC GACGTCCAAC TAAATCTAAA 15582 .......... .......... .......... .......... .......... .......... 1873 TAAATTTTTG GATCGAATCT TAGGTCGATT ATCAGGGTAA TATCTATAGA TTCGAGTGTT 15642 .......... .......... .......... .......... .......... .......... 1873 GGGGTTGAGG TCATATCCCA ATTTAAATGT CATGTTTCGA GTTGGGAGTT AGGGTCAGGT 15702 .......... .......... .......... .......... .......... .......... 1873 ACTAGGTTAA ATCCCATGCT CGGATACTGA GTCTGTTGTC GAGTTATGTC CTAATTCACG 15762 .......... .......... .......... .......... .......... .......... 1873 TGTCGAAATC GAGTTCCGAA TGAATTTTCG ATCAGAAACT ATTTTCCTAC TCTCTAGCCA 15822 .......... .......... .......... .......... .......... .......... 1873 AATATAAAAG ATATTTTCTA AAAAATATTT TCCTTCGTAG CAAACACACC ATAATTAATT 15882 .......... .......... .......... .......... .......... .......... 1873 ATTTTTTTCT CATATAAAAT AACTTTTGAT TCATAGTTTT TTAGTCAATG CTCTTTTATA 15942 .......... .......... .......... .......... .......... .......... 1873 AATAATTAGT TGTATTTTTT TTTTATAAAT TATAGGTGTG ACAAAGGAAA GTTGGCCAGA 16002 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTGTG ACAAAGGAAA GTTGGCCAGA 1898 ACTTCTTGGA ACACCAGCTA AGTTTGCAAA GCAAATAATT CAAAAGGAAA ATCCAAAATT 16062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCTTGGA ACACCAGCTA AGTTTGCAAA GCAAATAATT CAAAAGGAAA ATCCAAAATT 1958 AACAAATGTT GAAACTCTAC TGAATGGTTC AGCTTTTACA GAAGATTTGA GATGCAATAG 16122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAATGTT GAAACTCTAC TGAATGGTTC AGCTTTTACA GAAGATTTGA GATGCAATAG 2018 AGTTCGTCTT TTTGTAAATT TATTGGACAT TGTTGTACAA ACTCCCAAAG TTGGTTGAAC 16182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCGTCTT TTTGTAAATT TATTGGACAT TGTTGTACAA ACTCCCAAAG TTGGTTGAAC 2078 AAAATTAATT GATGTTATAT CATATGTATC TAGCCTCCAC AAAAATAAAT TGGAGATGTA 16242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTAATT GATGTTATAT CATATGTATC TAGCCTCCAC AAAAATAAAT TGGAGATGTA 2138 TGGTTAAAAT TTCCACTATA TTTGGTGATA AATAAATGTG GCTTTTAATA TTA 16295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGGTTAAAAT TTCCACTATA TTTGGTGATA AATAAATGTG GCTTTTAATA TTA 2191 hqPGS_C08HBa0235H18.1+_SGN-U316652+ (15214 15316,15420 15515,15978 16295) ******************************************************************************** EST sequence 60 -strand 850 n (File: SGN-U344475-) 1 CTGGTAATAT TTTTGAGGAC AAAAAATCCG TCCTGCGAAA AAAAACAAAT TTTGTCATCA 61 AATACGAACA ACCAAGTGAG GGGTAGTTAA TATATTGTTT TCTTAAACCA AAATAATATT 121 AATTCTCCAT ATTTAAAAAG GTAAGGTGTC AACCTCTTAG AGGGAACACA AATAGGTTTT 181 TGAAAAGAAA ACCAATGTTT TTAGTCAAAT AAGCCCCAAC AAGTGTTTAA TCTTAACGCA 241 TAATTAAGCC AAATTGTTTC ATATATTTAA AGTTTTAAAA CCAACCACTA GATGAAATCG 301 GTTTCATCGA AAGAAAGGGT GTTTTCGAAA AGACTTATGT TTTATTTTGA AGATATTTTC 361 GCTTTTTGGG AGTCGCCACT TAATTTTTTA AGAATAATCA AGAAAACTTC GTTTCTAAAC 421 AACTTAAACA GGAAAAATTT TTTTGAAACA TTTTATAAAG GTTCAGGATT CCTATTAGTG 481 TCTTAGGAAG GTGTAAGGCA CCTAAGACAC TCCGTTTAAT ACGGTTCTCC GACGATCAAC 541 CTATTTGACT ATTTTATTTA TTATTTGCAA ACTTGAAATT AGTTTGAACT TATTAGAATA 601 TTACTTGGCC AAATTCACAA GTTGAAATAC TTATTGTTTT TAAGATTTAG TTTTAACTTG 661 ATAAAATAGA AAGGCGTTCA AAAGGGGGTT TGGAGTTTTC TAATCCTAAG CTAACGGCAT 721 TCAAAACAAA ACACGAAAGA GCAACTAAAG GAGAGAGCTA GTGCCGAATT CCTGCAGCCC 781 GGGGGATCCA CTAGTTCTAG AGCGGCCGCC ACCGCGGTGG AGCTCCAGCA TGGTNTTCAA 841 AGGGGGTCAA Predicted gene structure (within gDNA segment 11786 to 21527): Exon 1 12767 12829 ( 63 n); cDNA 240 299 ( 60 n); score: 0.667 Intron 1 12830 15419 (2590 n); Pd: 0.000 (s: 0.64), Pa: 1.000 (s: 0) Exon 2 15420 15426 ( 7 n); cDNA 300 306 ( 7 n); score: 0.857 Intron 2 15427 15977 ( 551 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 3 15978 15995 ( 18 n); cDNA 307 323 ( 17 n); score: 0.556 Intron 3 15996 16580 ( 585 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 16581 16612 ( 32 n); cDNA 324 355 ( 32 n); score: 0.656 Intron 4 16613 16662 ( 50 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.85) Exon 5 16663 16943 ( 281 n); cDNA 356 639 ( 284 n); score: 0.774 Intron 5 16944 17042 ( 99 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.56) Exon 6 17043 17147 ( 105 n); cDNA 640 747 ( 108 n); score: 0.724 MATCH C08HBa0235H18.1+ SGN-U344475- 0.747 506 0.595 C PGS_C08HBa0235H18.1+_SGN-U344475- (12767 12829,15420 15426,15978 15995,16581 16612,16663 16943,17043 17147) Alignment (genomic DNA sequence = upper lines): ATAATATAAG AAAAATAAAT TAATATTTTT TTATTTACTA AAATAATTAA CTAATATAAA 12826 ||||| |||| |||| | | |||| ||| | || || ||| | | || | || || ATAAT-TAAG CCAAATTGTT TCATATATTT AAAGTT-TTA AAACCAACCA CT-AGATGAA 296 ATCAATGGAG TACTTATCTT GTCATTTTTT ATTTCGTGTT CAAGTTTCAC GCGTATTATT 12886 ||| ATC....... .......... .......... .......... .......... .......... 299 TGGAGGCGAA ATTTATGGAT CGCAATCAAT AAAATAAGGG AAGTTAATCT AATTAGGTAG 12946 .......... .......... .......... .......... .......... .......... 299 CATCTAAAAT CTCAATTAAA AAAACGAAAA ATTACATTAA TGACGTATAA AAACTTCAAA 13006 .......... .......... .......... .......... .......... .......... 299 TAATTACATG TTTTATATTC AATTCAATTC AAGAAATATT ATTCTCTTAA AATATAATAC 13066 .......... .......... .......... .......... .......... .......... 299 AGCCCATACC CTTTCCCATT GATTAAGGTT GATTATTTTT GCTTAATACA TATTAAATCA 13126 .......... .......... .......... .......... .......... .......... 299 GTATTATATA TTATATATTG TATTGATATC ATTAAAATTT ATAATTTCAT TTAATTGATA 13186 .......... .......... .......... .......... .......... .......... 299 CTAAATCAAA TATATGTATA TATATATATA TTGCCTATGT ATTATCACTG GCAACCTAAG 13246 .......... .......... .......... .......... .......... .......... 299 ATCTATTTGT TATTAATTTT CGTCGCAAAT TTAATTATCA TTAATTATGG AGTTAATTAC 13306 .......... .......... .......... .......... .......... .......... 299 TTGCAGTGAC ATTATGGTCG CCACTAAAAA TATTCAGTGT CGATTTAAAG AGGCTCATAT 13366 .......... .......... .......... .......... .......... .......... 299 ACATGACAGC GTGAAATGAT TCTCGAGGCA TTATCAATAC TTTTTTGTTT GTTTATTGGT 13426 .......... .......... .......... .......... .......... .......... 299 CTAATTTAGG CTTAATACTT TTCTAAAAGT TATTTTTTTT TTAAAAAAAA AGAACGATAA 13486 .......... .......... .......... .......... .......... .......... 299 TTCAAATGCA CTGTTGTTTT ATACATCTAA GACAAAAGTA CACATGAGAT GTAACTCTTA 13546 .......... .......... .......... .......... .......... .......... 299 TTCCGGTCTT TAAGTTTGTT ACGAACTCTT ATCAATAAAG TAAAAGTGAA TATTTAAAAA 13606 .......... .......... .......... .......... .......... .......... 299 ACTGAGCTAT TAAGATTTTT CATTACGGTA GAGATCAGTT GACTAATTGA GGCGATTTAA 13666 .......... .......... .......... .......... .......... .......... 299 AATGAAGAAA CTCAAATTCA CTTGGCCACT TCATCAGTAC TTGCAGGCAT CTCCAAGGGG 13726 .......... .......... .......... .......... .......... .......... 299 AAATTTGGAT CAGCAACACC ATTAGGACAA AAGACAACCC TATAGTTTGT ACTACCACCA 13786 .......... .......... .......... .......... .......... .......... 299 GGGCAAGTAA ATGTGCTTGT AGGATCGTCT TGTGGGTAGC TATAAGCATC GGGACATCTT 13846 .......... .......... .......... .......... .......... .......... 299 TTCTTGAAAA ATTTGGACAA CTCTGTAGGG CCACATGGAC CTTGGGTGCA ACAATATTGT 13906 .......... .......... .......... .......... .......... .......... 299 TGTCCTCCAA ACGTGGTACA AGGGTTGTTA CATCCTCCAG GTACCTTAAG GGCGCGAGGA 13966 .......... .......... .......... .......... .......... .......... 299 CATTCACCAT TTATATTGGC CGTGCAATGA ATTGCGTGAC ATTTTCCTCC ACTAGGTTTT 14026 .......... .......... .......... .......... .......... .......... 299 GTTGGGGCAA AAGTCATTGG AATATTAAAT CCATCGACTA AAGAAATGTC CCAAAAATCT 14086 .......... .......... .......... .......... .......... .......... 299 AAGTTGCTAA ACTGGTCCAA GGCGTACTCG GCTAGGGTGT TTGGGGGTTT GCCCCATCCG 14146 .......... .......... .......... .......... .......... .......... 299 GTACACTGTA AGACTCCACC ACAATCACCA GTCTGACATG TACCTCTGCC TGCAGCATTA 14206 .......... .......... .......... .......... .......... .......... 299 AAGTTGCAAC CAGTACGACC CCATATACGT GCCATCTTAG TTCCCCTCGG AGCATTGATG 14266 .......... .......... .......... .......... .......... .......... 299 ACCCATGTTT GGCCTCGATT GAGACGTCGA CCACCGCCTA TCGGAGTCGA TGCCGCCCAA 14326 .......... .......... .......... .......... .......... .......... 299 ACGGTGTATG GACAGTTGTT GCGTACCTCA ATAGTGGCAG CATAAGTATA AGTCACACAA 14386 .......... .......... .......... .......... .......... .......... 299 AGAAGGAAGA AGAGAACAAA AGAAGATGTC AAGTAGCCCA TGTTTGTTGA AATGTATATA 14446 .......... .......... .......... .......... .......... .......... 299 TGAGGATAAC TTATTTGAAA GCACTTTATA TAGGGGTGTG GCGGCTTTTG GCACTATGTA 14506 .......... .......... .......... .......... .......... .......... 299 TATTAATCAT AAATAACAAT ATCATATTTG ACAAAAAACG AATAATATTA AAATACGATA 14566 .......... .......... .......... .......... .......... .......... 299 TAGTAAAGTG GAGGTGAAAA AAGAAAAAAT GTATAAGAGC CGCCTAATAA ATAATAATTT 14626 .......... .......... .......... .......... .......... .......... 299 TATAAATATA GTACAAGTTC ACTTTATTTG GTGACAACTT TGTAACGTGA CGGAACTTAT 14686 .......... .......... .......... .......... .......... .......... 299 TTCTCAAAAT AAATATTATT TAAAAAAAAA AAACAGCATC TTTCGTGACC AAAGTTTCTT 14746 .......... .......... .......... .......... .......... .......... 299 TCTATATTTA TCAATTCCAT TTTTTTTACT TTGACAGTAT TTTGTATACG TTTAAACATA 14806 .......... .......... .......... .......... .......... .......... 299 AAAATTAGGT TTTTCATATT ACTCGTATGG ATCGATTAAT TTCAAATATA CAAATCAATT 14866 .......... .......... .......... .......... .......... .......... 299 CGATTAACTA TTATATACAG TGGAAATGAT GTTTATGTGA CTCGTAATTG ATATTTTAAG 14926 .......... .......... .......... .......... .......... .......... 299 CGATCAGAAT ATTTTAATGC ATATCTATTA AGAAAATACC TATTGATGCA AAAGTCAACA 14986 .......... .......... .......... .......... .......... .......... 299 AAATTATTTA ATTTATTTAT TTTACGATCG AAGCATGAAT ACATTTACTA ATTAAAGTAA 15046 .......... .......... .......... .......... .......... .......... 299 ATTGGGAGGA ATTGATGGAC GAGTCATCAA GCTTATCAAA TGTCAATCAA CATTAAAATA 15106 .......... .......... .......... .......... .......... .......... 299 ATGTTAGTTT ATGGCTGCTT TTAAATGAAC AAGTGGATCA TGTACAATTG AGTAAAAAAT 15166 .......... .......... .......... .......... .......... .......... 299 ATCTCCTATA AATATATATA TCCCTCTAAA ACCAAATAAC ATAACACACA AATATAAACT 15226 .......... .......... .......... .......... .......... .......... 299 TTAGATTCTT AAAAACAAAG CTGAATTATA TGGAGGCAAA TAAGTCTATG GTGAAGTTGG 15286 .......... .......... .......... .......... .......... .......... 299 TTGCTTTCTT GATAATTCTT GTATCATCAT GTAATTAATT GACCATTTAT TTCTACTTTA 15346 .......... .......... .......... .......... .......... .......... 299 TTAAATTTAT TCACATTTCT TATTTTTATT TGTTAAAAGA AATTGATTAA TTATGTAAAT 15406 .......... .......... .......... .......... .......... .......... 299 TATTTATGAA CAGGCTTTCA ATCTCTCACT GCTCAAGATT TGGAAATCGA AGTTAGCGAT 15466 | ||||| .......... ...GGTTTCA .......... .......... .......... .......... 306 GGCTTAAATG TATTGCAAGT ACATGATGTG TCTCAATCTT TTTGTCCAGG TTTGGTTTTT 15526 .......... .......... .......... .......... .......... .......... 306 ATCTCTACCG TCCTTTTTGG ATATATATAC ACGTACGACG TCCAACTAAA TCTAAATAAA 15586 .......... .......... .......... .......... .......... .......... 306 TTTTTGGATC GAATCTTAGG TCGATTATCA GGGTAATATC TATAGATTCG AGTGTTGGGG 15646 .......... .......... .......... .......... .......... .......... 306 TTGAGGTCAT ATCCCAATTT AAATGTCATG TTTCGAGTTG GGAGTTAGGG TCAGGTACTA 15706 .......... .......... .......... .......... .......... .......... 306 GGTTAAATCC CATGCTCGGA TACTGAGTCT GTTGTCGAGT TATGTCCTAA TTCACGTGTC 15766 .......... .......... .......... .......... .......... .......... 306 GAAATCGAGT TCCGAATGAA TTTTCGATCA GAAACTATTT TCCTACTCTC TAGCCAAATA 15826 .......... .......... .......... .......... .......... .......... 306 TAAAAGATAT TTTCTAAAAA ATATTTTCCT TCGTAGCAAA CACACCATAA TTAATTATTT 15886 .......... .......... .......... .......... .......... .......... 306 TTTTCTCATA TAAAATAACT TTTGATTCAT AGTTTTTTAG TCAATGCTCT TTTATAAATA 15946 .......... .......... .......... .......... .......... .......... 306 ATTAGTTGTA TTTTTTTTTT ATAAATTATA GGTGTGACAA AGGAAAGTTG GCCAGAACTT 16006 | | || ||| ||| .......... .......... .......... .TCGAAAGAA AGG-GTGTT. .......... 323 CTTGGAACAC CAGCTAAGTT TGCAAAGCAA ATAATTCAAA AGGAAAATCC AAAATTAACA 16066 .......... .......... .......... .......... .......... .......... 323 AATGTTGAAA CTCTACTGAA TGGTTCAGCT TTTACAGAAG ATTTGAGATG CAATAGAGTT 16126 .......... .......... .......... .......... .......... .......... 323 CGTCTTTTTG TAAATTTATT GGACATTGTT GTACAAACTC CCAAAGTTGG TTGAACAAAA 16186 .......... .......... .......... .......... .......... .......... 323 TTAATTGATG TTATATCATA TGTATCTAGC CTCCACAAAA ATAAATTGGA GATGTATGGT 16246 .......... .......... .......... .......... .......... .......... 323 TAAAATTTCC ACTATATTTG GTGATAAATA AATGTGGCTT TTAATATTAA TATGATTTTT 16306 .......... .......... .......... .......... .......... .......... 323 GTTATATATA CAATTACTTC TACTATATAC CAGTGAAATC TCATTAGCAT TGGGAAGGTG 16366 .......... .......... .......... .......... .......... .......... 323 TTACGTACGC AACCTTATCT TATGCTAACT ATCATCAGGG CGGTCTTAAC GCTATGCAAC 16426 .......... .......... .......... .......... .......... .......... 323 TAAAGGGGGG TGGGGGGTAT TTCTAAGAAA AAATTAATTA TAAATGTTAT TTTAAAAATA 16486 .......... .......... .......... .......... .......... .......... 323 ATTATATGTA CTATGAGTGG TATGATTTCT ACAAGGAAAT TGCATATATA ATGAGTATAT 16546 .......... .......... .......... .......... .......... .......... 323 CATCTCAATT GTGACTTTGA TGAAAAGTTC TGACTTTTAA GAAAATTTTG TCTTTTATGA 16606 || || | | || || | || | | .......... .......... .......... ....TTCGAA AAGACTTATG TTTTATTTTG 349 AAGATAGTGA CATTTGTTTT ATCGAAAAAG GGTGGTGATT TTCGAAAAGA GTTTGTTTTT 16666 |||||| |||| AAGATA.... .......... .......... .......... .......... ......TTTT 359 AGACTTTTAG GAGTCGCCAC TTAA-TTTTT AAGAAAAATC AAGAAAACTT CGTTTCTAAA 16725 | |||| | |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| CGCTTTTTGG GAGTCGCCAC TTAATTTTTT AAGAATAATC AAGAAAACTT CGTTTCTAAA 419 CAACTTAAAC AGAAAAAATT GTTTTGAAAC A-TTT-TAAG GGTTCGGGAT TCCTATTAGT 16783 |||||||||| || ||||||| ||||||||| | ||| ||| ||||| |||| |||||||||| CAACTTAAAC AGGAAAAATT TTTTTGAAAC ATTTTATAAA GGTTCAGGAT TCCTATTAGT 479 ATCTTAGGAA GGTGTAAGGC ACCCAAAACA CTCCGTTAAC TTACGGTTTT CCAATGATTA 16843 ||||||||| |||||||||| ||| || ||| ||||||| | ||||||| | || | ||| | GTCTTAGGAA GGTGTAAGGC ACCTAAGACA CTCCGTTTA- ATACGGTTCT CCGACGATCA 538 A-CTATTTGA -T-TATT-TT TATT-TTT-A ACCTTTGCAA ATTTATTTGA ACTTTTAACA 16897 | |||||||| | | || || |||| ||| | ||| || ||| ||||| |||| | | | ACCTATTTGA CTATTTTATT TATTATTTGC AAACTTG-AA ATTAGTTTGA ACTTATTAGA 597 TGACTTACTT AGCCAAACTT AGCCAATTTT GAAATATTTA TTGTTTATCT TGCCAGTTTA 16957 | |||||| |||||| || ||| || |||||| ||| |||||| ATA-TTACTT GGCCAAA-TT -CACAA-GTT GAAATACTTA TTGTTT.... .......... 639 CGAAACCATT TCAAAGTTAA GCTTACTCAA GGTTTTATCT AAACAAGCCT TACGAATTTG 17017 .......... .......... .......... .......... .......... .......... 639 AAACAATTTA TCATTTAGAA GTTAGTT-TT AAAAATTTTT AGGTTTGATA AAATA-ACAG 17075 || | | |||| | |||||| ||||| | || .......... .......... .....TTAAG ATTTAGTTTT A-ACTTGATA AAATAGAAAG 673 GCGTTC-GAT GAGGGTTTGG AGTTTCCTAA TCCTAAGCTA ACGGCATTGA AAACAAAATA 17134 |||||| | | |||||||| ||||| |||| |||||||||| |||||||| | |||||||| | GCGTTCAAAA GGGGGTTTGG AGTTTTCTAA TCCTAAGCTA ACGGCATTCA AAACAAAACA 733 AGATA-AGCA AATA 17147 || | |||| | || CGAAAGAGCA ACTA 747 hqPGS_C08HBa0235H18.1+_SGN-U344475- (16663 16943,17043 17147) ******************************************************************************** EST sequence 65 -strand 647 n (File: SGN-U315283-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CCGTTAAATA CGGTTTTCCA 421 ACGACTAACT TATTTGATTA TTTTTATTTT TACCCTTTGC AAATTTATTT GAACTTTTAT 481 CACGATTTAC TTAGCCAAAC TTTGCAAATT TGAGATATTA ATCTTTTAAG ATTCCGTCTT 541 AGTTAAACTT TCTAAGCCTT AACTCTCTAA GCAGACTTTC AAATTTTAAA CCTCTATCGT 601 TTCAAAACTT CAATTTTTAT TTTTTAGTTT CATAAAGCAA AAGGCGT Predicted gene structure (within gDNA segment 14129 to 18967): Exon 1 15420 15424 ( 5 n); cDNA 187 191 ( 5 n); score: 1.000 Intron 1 15425 15515 ( 91 n); Pd: 0.000 (s: 0), Pa: 0.735 (s: 0) Exon 2 15516 15520 ( 5 n); cDNA 192 196 ( 5 n); score: 0.800 Intron 2 15521 16609 (1089 n); Pd: 0.000 (s: 0), Pa: 0.764 (s: 0.54) Exon 3 16610 16984 ( 375 n); cDNA 197 568 ( 372 n); score: 0.756 MATCH C08HBa0235H18.1+ SGN-U315283- 0.756 385 0.595 C PGS_C08HBa0235H18.1+_SGN-U315283- (15420 15424,15516 15520,16610 16984) Alignment (genomic DNA sequence = upper lines): GCTTTCAATC TCTCACTGCT CAAGATTTGG AAATCGAAGT TAGCGATGGC TTAAATGTAT 15479 ||||| GCTTT..... .......... .......... .......... .......... .......... 191 TGCAAGTACA TGATGTGTCT CAATCTTTTT GTCCAGGTTT GGTTTTTATC TCTACCGTCC 15539 |||| .......... .......... .......... ......GTTT T......... .......... 196 TTTTTGGATA TATATACACG TACGACGTCC AACTAAATCT AAATAAATTT TTGGATCGAA 15599 .......... .......... .......... .......... .......... .......... 196 TCTTAGGTCG ATTATCAGGG TAATATCTAT AGATTCGAGT GTTGGGGTTG AGGTCATATC 15659 .......... .......... .......... .......... .......... .......... 196 CCAATTTAAA TGTCATGTTT CGAGTTGGGA GTTAGGGTCA GGTACTAGGT TAAATCCCAT 15719 .......... .......... .......... .......... .......... .......... 196 GCTCGGATAC TGAGTCTGTT GTCGAGTTAT GTCCTAATTC ACGTGTCGAA ATCGAGTTCC 15779 .......... .......... .......... .......... .......... .......... 196 GAATGAATTT TCGATCAGAA ACTATTTTCC TACTCTCTAG CCAAATATAA AAGATATTTT 15839 .......... .......... .......... .......... .......... .......... 196 CTAAAAAATA TTTTCCTTCG TAGCAAACAC ACCATAATTA ATTATTTTTT TCTCATATAA 15899 .......... .......... .......... .......... .......... .......... 196 AATAACTTTT GATTCATAGT TTTTTAGTCA ATGCTCTTTT ATAAATAATT AGTTGTATTT 15959 .......... .......... .......... .......... .......... .......... 196 TTTTTTTATA AATTATAGGT GTGACAAAGG AAAGTTGGCC AGAACTTCTT GGAACACCAG 16019 .......... .......... .......... .......... .......... .......... 196 CTAAGTTTGC AAAGCAAATA ATTCAAAAGG AAAATCCAAA ATTAACAAAT GTTGAAACTC 16079 .......... .......... .......... .......... .......... .......... 196 TACTGAATGG TTCAGCTTTT ACAGAAGATT TGAGATGCAA TAGAGTTCGT CTTTTTGTAA 16139 .......... .......... .......... .......... .......... .......... 196 ATTTATTGGA CATTGTTGTA CAAACTCCCA AAGTTGGTTG AACAAAATTA ATTGATGTTA 16199 .......... .......... .......... .......... .......... .......... 196 TATCATATGT ATCTAGCCTC CACAAAAATA AATTGGAGAT GTATGGTTAA AATTTCCACT 16259 .......... .......... .......... .......... .......... .......... 196 ATATTTGGTG ATAAATAAAT GTGGCTTTTA ATATTAATAT GATTTTTGTT ATATATACAA 16319 .......... .......... .......... .......... .......... .......... 196 TTACTTCTAC TATATACCAG TGAAATCTCA TTAGCATTGG GAAGGTGTTA CGTACGCAAC 16379 .......... .......... .......... .......... .......... .......... 196 CTTATCTTAT GCTAACTATC ATCAGGGCGG TCTTAACGCT ATGCAACTAA AGGGGGGTGG 16439 .......... .......... .......... .......... .......... .......... 196 GGGGTATTTC TAAGAAAAAA TTAATTATAA ATGTTATTTT AAAAATAATT ATATGTACTA 16499 .......... .......... .......... .......... .......... .......... 196 TGAGTGGTAT GATTTCTACA AGGAAATTGC ATATATAATG AGTATATCAT CTCAATTGTG 16559 .......... .......... .......... .......... .......... .......... 196 ACTTTGATGA AAAGTTCTGA CTTTTAAGAA AATTTTGTCT TTTATGAAAG ATAG-TGACA 16618 || | | | .......... .......... .......... .......... .......... ATCGAAAAAA 206 TTTGTTTTAT CGAAAAAGGG TGGTGATTTT CGAAAAGAGT TTGTTTTTAG ACTTTTAGGA 16678 || ||| | || ||||| | | || |||| | || | ||||| | || ||||||| GGTGATTTTT CG-AAAAGAG T-TTG-TTTT ATTTTAAAG- -TATTTTTCG AC-TTTAGGA 260 GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTTCGT TTCTAAACAA CTTAAACAGA 16738 |||||||||| |||||||||| |||||||||| |||||| | || |||||| |||||||| GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT CTCAAAACAA TTTAAACAG- 319 AAAAATTGTT TTG-AAACA- TTTTAAGGGT TCGGGATTCC TATTAGTATC TTAGGAAGGT 16796 |||| | ||| ||| ||| | |||| ||| | ||||||||| |||||| || |||||||||| AAAAGTCGTT TTGAAAATAT TTTTTAGGAT TCGGGATTCT TATTAGCGTC TTAGGAAGGT 379 G--TAAGGCA CCCAAAACAC TCCGTTAACT TACGGTTTTC CAATGATTAA C-TATTTGAT 16853 | ||||||| || || |||| |||||||| |||||||||| ||| || ||| | |||||||| GTTTAAGGCA CCTAAGACAC TCCGTTAA-A TACGGTTTTC CAACGACTAA CTTATTTGAT 438 TATTTTTATT TTTAACCTTT GCAAATTTAT TTGAACTTTT AACATGACTT ACTTAGCCAA 16913 |||||||||| |||| ||||| |||||||||| |||||||||| | || || || |||||||||| TATTTTTATT TTTACCCTTT GCAAATTTAT TTGAACTTTT ATCACGATTT ACTTAGCCAA 498 ACTTAGCCAA TTTTGAAATA TTTATTGTTT ATCTTGCCAG TTTACGAAAC CATTTCAAAG 16973 |||| | ||| ||||| ||| || || ||| | | || ||| || | |||| ||| ACTTTG-CAA ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA C-TTTCTAAG 556 -TTAAGCTTA CT 16984 | | || || CCTTAACTCT CT 568 hqPGS_C08HBa0235H18.1+_SGN-U315283- (16610 16984) ******************************************************************************** EST sequence 31 +strand 729 n (File: SGN-U319275+) 1 CAACGGGATA CGTAGGCGCC ACAAGGGCTC GGTCATATAT CTCGTAAATT CTATTCCCCC 61 CTTTCTACAA TAGAAACTGG GACAGAATTT TGAGAGGGAC TCAAAAATTC TCCAGAAGGA 121 ACCTTCTCTT CAGCGGATCA AACTAAAGAC ATTTCGAATT TGCGACTGGG ACAGAATTTT 181 TTAGAAGATC TCAAAAATTC CGAGATCTGT TCGGTTACAA TGGAAAGATG AACAAGATAC 241 TAAACTGGGA CAGAAATTTT GAGGATGGCC TCAAAATTTC GTCATGGGAC TTCCCCACAA 301 GTCTGGAATG CCTCTGAAAT TCATTCGACA AGCGTCGGAC TCAAAGAAGC TCGTTAAGCC 361 TGACATGACA TGACTTGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA AATTTCTTGC 421 TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT TTTCTTATCT 481 ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG CAAACAATCG 541 AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA TGCAGGTTTA 601 TAGCTTCACT TCGAAATCGG CCGAATTCAG GCCACTTGTA GTTCGATAAG CTTGATTTAC 661 CGCACGATTT CAAAGAATCA AAAGCCACCT TGACACCGAA TTATGAAGGT ATCGAAATGC 721 TCGAGAATA Predicted gene structure (within gDNA segment 13606 to 21142): Exon 1 17082 17117 ( 36 n); cDNA 589 623 ( 35 n); score: 0.583 Intron 1 17118 20426 (3309 n); Pd: 0.470 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 20427 20532 ( 106 n); cDNA 624 729 ( 106 n); score: 1.000 MATCH C08HBa0235H18.1+ SGN-U319275+ 1.000 142 0.195 C PGS_C08HBa0235H18.1+_SGN-U319275+ (17082 17117,20427 20532) Alignment (genomic DNA sequence = upper lines): GATGAGGGTT TGGAGTTTCC TAATCCTAAG CTAACGGCAT TGAAAACAAA ATAAGATAAG 17141 |||| |||| | || || | || || | || GATGCAGGTT TATAGCTT-C ACTTCGAAAT CGGCCG.... .......... .......... 623 CAAATAGTAA AGAGAAGGAT AGAGAGAGAG AGATTTGGGT CCAACTCCGG GTTCTGTTAT 17201 .......... .......... .......... .......... .......... .......... 623 CCTTGACCGA ATGTTGGACC CACCTGCCTT TGGGTTTTTT AGCCCATTTC TGTACCTGTC 17261 .......... .......... .......... .......... .......... .......... 623 CTAATCTAAA CATACAAACA TAATATAGAA AACAAAAAAA CGACAAGAGG GCTTAGGCCC 17321 .......... .......... .......... .......... .......... .......... 623 ATTACAAAAT ATGCAAAGTA AAATAAAACG AAAGAAAAGT CTTTTAGTCC ATCGTCTTCA 17381 .......... .......... .......... .......... .......... .......... 623 ATCTCCATGA CCCTTGTCTT TCTACACTTG CTCGTTTTGA TGAATTGACT CGATAAAGTT 17441 .......... .......... .......... .......... .......... .......... 623 CAGAGTCTTC AAGACTCTCT CGAAATGCGA GGAGGATAAT GGGATTCCCA TAATGGACTC 17501 .......... .......... .......... .......... .......... .......... 623 ACGGGGAGTT TTCACATGTC ACAAAAAAAA CGATAAAATG AAGATTGGCA TTTTTAAAAC 17561 .......... .......... .......... .......... .......... .......... 623 TACAATTAGA ATAAGCAAGG TTCTAAAGCA TAACAAGGAT ATCTTTATAA TGCAATACTA 17621 .......... .......... .......... .......... .......... .......... 623 ATTAAATCTT CATGAGAAGC AAAGCCAACA TCCAACAACC TTAATGGTAC TTAGAGATAT 17681 .......... .......... .......... .......... .......... .......... 623 GCAAATCAGT CAACCTAAAT GACACTACAT AACGATACGT AAACTGTGCG GCGAAACCCC 17741 .......... .......... .......... .......... .......... .......... 623 AAGTGTAGTG AAACCTTCAC ACAAAATTGT TGGTAATTTC CAAATTTTAT ATTTAAAGAA 17801 .......... .......... .......... .......... .......... .......... 623 AGGACTTAGC ATGGGATAAA TAACGAATAC AAATAGAGAT GCATCATAAA TTGAGTATCA 17861 .......... .......... .......... .......... .......... .......... 623 ATTAGCCGTT TTGCGCTTCA AACATTTGAA ACAAACTTGA ACCAATCATA AGAGGACAGC 17921 .......... .......... .......... .......... .......... .......... 623 CTCATCAAAT AAAACAGGAT CCCGATCACC TTATCACCCA AACATCTAAC ACACTAAGCG 17981 .......... .......... .......... .......... .......... .......... 623 AAAGGACCAT TCAATCGACC TACTACATGG CTGTGACCTC GGACAGCTAA CACAAGTGGC 18041 .......... .......... .......... .......... .......... .......... 623 CACCAAGATA AAGATGGCCT TTCAAACCAC AGATTTCCAA AATCCACACC ACCCATACGG 18101 .......... .......... .......... .......... .......... .......... 623 CATACAAAAC GAAACTTTCA TGCAAGACGC CTGACAAACA TGATATCTAA ACAAGATAAC 18161 .......... .......... .......... .......... .......... .......... 623 AAGTTTGGGA GATAAATACA TTATAGAGAA TAAACAACCC TCATATATTC TTAAAGCGAT 18221 .......... .......... .......... .......... .......... .......... 623 ACTCGAACCA AAAGCTTGAA GAAGGTTCGA TTGAAAAGAA GCTTACAACT ACAACTCCCG 18281 .......... .......... .......... .......... .......... .......... 623 CGAGATAGAC ATCATGAGCA AGCTTGGACG AGACAACAAG GGAAAATTAC ACTCTAAACA 18341 .......... .......... .......... .......... .......... .......... 623 TACATACATG CATACAAACA ATCCAAGAGC CTGCTTTAAC GAATAGACAT CGATACTCGG 18401 .......... .......... .......... .......... .......... .......... 623 ATTAATGAGT CATTTCACAG AAGCTCTTGC CAATATGTCT TAACAATCTC ATTCCAATCA 18461 .......... .......... .......... .......... .......... .......... 623 TGTGACGAAT AAATAGTGTT CTACGAGATT AAGCTAGCAT ATATTGAAAG TTCTAAATGG 18521 .......... .......... .......... .......... .......... .......... 623 CAAGCAAAGC AGCGACAGTG TTAACAAACC ACAAAGACAA GCTCAACCGA CCATGTATAT 18581 .......... .......... .......... .......... .......... .......... 623 TCACATTTTC GAGTATCTCA ACATGTTCGA CCACAAACTA AGAAAGGGCC AGCAAGTCGA 18641 .......... .......... .......... .......... .......... .......... 623 TTAACAAACA TCACATGTCA TACGGCGAAG GCTCCTCGAA ACAAATACAA AGTCATGACT 18701 .......... .......... .......... .......... .......... .......... 623 AACTCGTGAA GACAAACAGA GAAGCAATGT CGACGAACCA TCACATTGGG ACAGAATCAC 18761 .......... .......... .......... .......... .......... .......... 623 AACGTAAGAC ATATTCCAGA CTTAAACAAC CAAACGAAAT ATGATACCTC ATGTTGACAG 18821 .......... .......... .......... .......... .......... .......... 623 CACCACAAAC CACGACTCAA CTCCATAAAG AAAATTTAAA ATAATAAAGA AAAATGGGAC 18881 .......... .......... .......... .......... .......... .......... 623 ATGTACCTTT CTCGGAGCAG CGGAACAGGG ATGACGGCGA GCAGACGACG ATGACTTCCC 18941 .......... .......... .......... .......... .......... .......... 623 CACGCGACCC ACGGCTAGAC GTTTATCTCG TTTGTTCTTC GTATTGGAGT CCTATTCCCG 19001 .......... .......... .......... .......... .......... .......... 623 AAAAATCCCG ACTGTTTTGC TACACGAACA GGACAGGAAG AAATCTTCTT CAAAGTCTTC 19061 .......... .......... .......... .......... .......... .......... 623 CTAAACCAGA ATTTCTAACC AAATTTTCTA ACTTCTTTTG GTTATCTCAG AAACAATGGA 19121 .......... .......... .......... .......... .......... .......... 623 ATAAACCCAG AATTTCAAAC AACGTTCCCA ACCCAAAATT TCCTAACAAG AGACGGAAGA 19181 .......... .......... .......... .......... .......... .......... 623 AGCAGAGTCT TTTTTTTTCG AAAATTTTCT CAACCAAAAT CCCTAACCCT TTTCTGTGTC 19241 .......... .......... .......... .......... .......... .......... 623 TTTCTTTTCT TTTTCAAAAA TCTCAAATAT CTAACATTCT TTCAACTCCC AAAATTCCCA 19301 .......... .......... .......... .......... .......... .......... 623 GCGCTCCAAG TTCTGCTTTT CCGAATTTTT CGATGAAAAA ATCTCTCACC CCTTTTCTGA 19361 .......... .......... .......... .......... .......... .......... 623 TGAAGAAAAG GGGTATTTAT AGAGGAGAAG AAATAGCCCC CCTTTTCTCC TTTTGAAATC 19421 .......... .......... .......... .......... .......... .......... 623 GAAACTAAAT CCCGTTTCGG TCAAACTTCA CATGGCACAG GCGTGTTGGA GAGGATGAAA 19481 .......... .......... .......... .......... .......... .......... 623 TTGACACCTC GCAGACCTAC TCGACAGCGT ATGGGTCTCT GCGCTTCCGT TTGGTTCACG 19541 .......... .......... .......... .......... .......... .......... 623 CGAAGAGAAA GATGGAAGGA GAAGAGCGTG GGGTTGTTGG AGTCTCTCTG TTTTTCGCGT 19601 .......... .......... .......... .......... .......... .......... 623 GATTTCTGGG GAATTATGGG TTTTTGTCGA GAGGGGAAGG AGAGAGCGAG CGTGGGGGAG 19661 .......... .......... .......... .......... .......... .......... 623 ACGCGGGGAG AGGATAAGAG GAAGGGAGAG AGCGAGGAGA GAGCGTGGGG AGGGGGTCGC 19721 .......... .......... .......... .......... .......... .......... 623 GTGGCTGCGC ATCTGGGAAT TGTTTGGGAA TTTTGGCTTT CTGTTTTGCT GGGTTCGCGT 19781 .......... .......... .......... .......... .......... .......... 623 GGGGTGAGGG GAGAAGAAGG AAAGGGGAAC GGGTCGGGTC GGGTAGGATG GGTTCTGGGT 19841 .......... .......... .......... .......... .......... .......... 623 CGGGTAGGAT GGGTTATGGT GAATTGGGTT GGGCTGGAGA ATAAAAGAAT TGGGTGTTGG 19901 .......... .......... .......... .......... .......... .......... 623 GATTAATTTG TTGGGCTTGT TTTAAAAATG TGTGTTGGGT TGGTATTTTT TAAAAGAAAT 19961 .......... .......... .......... .......... .......... .......... 623 AAAAGGGGAT GTTGGACTGG GTTGAAGAGG ATGGGCGTCT GGGGGGAATT GGGCCTTGAG 20021 .......... .......... .......... .......... .......... .......... 623 TCTGTGGGCT GTTGGGAATA TTGGGTGTAA GGAATTTAGG CAAAATGGGT TGAGGACGAA 20081 .......... .......... .......... .......... .......... .......... 623 AGTGGGCCTC GGAATAAGAG TGGGCTGATG GGTAAAGGAA TGGGTTCAAG ATATACATAT 20141 .......... .......... .......... .......... .......... .......... 623 ATACATATAC ATATATGTAT ATACATATAT GTATATATGT ACATATATTT ATTTTCGCAA 20201 .......... .......... .......... .......... .......... .......... 623 GGTTTATAAA ACTAACTAAC TCATACCGAC GCGGGTCAAA ATTGGGTGTC AACAACTGTC 20261 .......... .......... .......... .......... .......... .......... 623 CCTCATTTTA CTTGGGTGGA TGCAAGCAAC TCGAGGAAAA TGAAGTTGAC CGAACCAATT 20321 .......... .......... .......... .......... .......... .......... 623 TTGACCAACT CCACTCGCCT TCAGGAAGAA GGATTTGTCA AAGAGTTTAG GAATTATGGC 20381 .......... .......... .......... .......... .......... .......... 623 CGAACCCTTG CAAACGGGTC TCCTACATAC CTCAGGCTAT ATGAGAATTC AGGCCACTTG 20441 ||||| |||||||||| .......... .......... .......... .......... .....AATTC AGGCCACTTG 638 TAGTTCGATA AGCTTGATTT ACCGCACGAT TTCAAAGAAT CAAAAGCCAC CTTGACACCG 20501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTCGATA AGCTTGATTT ACCGCACGAT TTCAAAGAAT CAAAAGCCAC CTTGACACCG 698 AATTATGAAG GTATCGAAAT GCTCGAGAAT A 20532 |||||||||| |||||||||| |||||||||| | AATTATGAAG GTATCGAAAT GCTCGAGAAT A 729 hqPGS_C08HBa0235H18.1+_SGN-U319275+ (20427 20532) ******************************************************************************** EST sequence 72 +strand 729 n (File: SGN-U319275+) 1 CAACGGGATA CGTAGGCGCC ACAAGGGCTC GGTCATATAT CTCGTAAATT CTATTCCCCC 61 CTTTCTACAA TAGAAACTGG GACAGAATTT TGAGAGGGAC TCAAAAATTC TCCAGAAGGA 121 ACCTTCTCTT CAGCGGATCA AACTAAAGAC ATTTCGAATT TGCGACTGGG ACAGAATTTT 181 TTAGAAGATC TCAAAAATTC CGAGATCTGT TCGGTTACAA TGGAAAGATG AACAAGATAC 241 TAAACTGGGA CAGAAATTTT GAGGATGGCC TCAAAATTTC GTCATGGGAC TTCCCCACAA 301 GTCTGGAATG CCTCTGAAAT TCATTCGACA AGCGTCGGAC TCAAAGAAGC TCGTTAAGCC 361 TGACATGACA TGACTTGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA AATTTCTTGC 421 TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT TTTCTTATCT 481 ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG CAAACAATCG 541 AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA TGCAGGTTTA 601 TAGCTTCACT TCGAAATCGG CCGAATTCAG GCCACTTGTA GTTCGATAAG CTTGATTTAC 661 CGCACGATTT CAAAGAATCA AAAGCCACCT TGACACCGAA TTATGAAGGT ATCGAAATGC 721 TCGAGAATA Predicted gene structure (within gDNA segment 24038 to 21191): Exon 1 23438 22803 ( 636 n); cDNA 1 636 ( 636 n); score: 0.994 MATCH C08HBa0235H18.1- SGN-U319275+ 0.994 636 0.872 C PGS_C08HBa0235H18.1-_SGN-U319275+ (23438 22803) Alignment (genomic DNA sequence = upper lines): CAACGGGATA CGTAGGCGCC ACAAGGGCTC GGTCATATAT CTCGTAAATT CTATTCCCCC 23379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGGGATA CGTAGGCGCC ACAAGGGCTC GGTCATATAT CTCGTAAATT CTATTCCCCC 60 CTTTCTACAA TAGAAACTGG GACAGAATTT TGAGAGGGAC TCAAAAATTC TCCAGAAGGA 23319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTACAA TAGAAACTGG GACAGAATTT TGAGAGGGAC TCAAAAATTC TCCAGAAGGA 120 ACCTTCTCTT CAGCGGATCA AACTAAAGAC ATTTCGAATT TGCGACTGGG ACAGAATTTT 23259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTCTCTT CAGCGGATCA AACTAAAGAC ATTTCGAATT TGCGACTGGG ACAGAATTTT 180 TTAGAAGATC TCAAAAATTC CGAGATCTGT TCGGTTACAA TGGAAAGATG AACAAGATAC 23199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAAGATC TCAAAAATTC CGAGATCTGT TCGGTTACAA TGGAAAGATG AACAAGATAC 240 TAAACTGGGA CAGAAATTTT GAGGATGGCC TCAAAATTTC GTCATGGGAC TTCCCCACAA 23139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTGGGA CAGAAATTTT GAGGATGGCC TCAAAATTTC GTCATGGGAC TTCCCCACAA 300 GTCTGGAATG CCTCTGAAAT TCATTCGACA AGCGTCGGAC TCAAAGAAGC TCGTTAAGCC 23079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGGAATG CCTCTGAAAT TCATTCGACA AGCGTCGGAC TCAAAGAAGC TCGTTAAGCC 360 TGACATGACA TGACTTGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA AATTTCTTGC 23019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACATGACA TGACTTGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA AATTTCTTGC 420 TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT TTTCTTATCT 22959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT TTTCTTATCT 480 ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG CAAACAATCG 22899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG CAAACAATCG 540 AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA TGCAGGTTTA 22839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA TGCAGGTTTA 600 TAGCTTCACT TCGAAATCGG CCGAATTCTT CCGACT 22803 |||||||||| |||||||||| |||||||| | ||| TAGCTTCACT TCGAAATCGG CCGAATTCAG GCCACT 636 hqPGS_C08HBa0235H18.1-_SGN-U319275+ (23438 22803) ******************************************************************************** EST sequence 71 +strand 1155 n (File: SGN-U338284+) 1 NAACCCTGAC TCCCGGTGGC GCGCTCTGAA TAGTGGATCC CCCGGGCTGC AGGAATTCGG 61 CACGAGCGTT TTGAGACGGG TGCCACCTCA CGAACTTAAC GCTATGAGTT CACCTTGGCC 121 ATTTGTAGCT TGGGGAATGG ATGTCATCAG TTCTATAGAG TCTACCGCTT CTAATGGACA 181 TAGATTCATT TTGGTTGCCA TTGATTATTT CACCAAGTGG GTGGAAGCAA CCCCTTACAA 241 GTCGGTAACC AAGAAAGTGG TGGTCGATTT TGTTCGCAAC AATCTGATAT GCAGATTTGG 301 AGTTCCAGAA TCCATCATTA CTGATAACGG GGCAAATCTC AACAGTCATT TGATGAAACA 361 GATATATGAA CAATTTAAGT TATTCATCGA AAGTCAACTG CTTATCGCCC CCAAATGAAC 421 AGAGCTGTAG AAGCCGCCAA CAAAAATATC AAGAAGATTT TGAGGAAAAT GATTGACAAA 481 CAGCGGGGTT GGCATGAAAT GTTGCCATAT GCTTTTCTAG GTTATCGAAC GACGGTCAGA 541 ACATCGACTT GGGCTACTCC ATACTTGCTA GTATATGGAA CAGAGGCAGT CGTGCCTGTT 601 GAAGTCGAGA TACCGTCATT GCGGATCATC CAAGAAGCTG AATTAAGTAA CGCCGAATGG 661 CTTAGCAAAC AGATTGATCA ACTAGCCTTA ATTGATAAGA AGAGAATAGT TGCGTTTGCC 721 ATGGCAAGTT GTACAGACAG AGAATGACTC GCGCTTTTCA CAAAAGAGTA AGAGCCAGGA 781 ATTTTGAAGT TGGTCAGTTG GTTCTTAAGC GTATTTTTCC TCATCAAGAC GAGTACAAAG 841 AAAAGTTCGC GCTTACCTGG CAGGGTCCTT ACTTGGTTCG TAAAATATTA TCGGGAGGTG 901 CTTTGGGTCT TGTTAGACCC GGAAGGCGAT GTATCGCCCA AACCTATCAA CTCAGAATCT 961 GTCAAGAGAA TACTATGCCT GAAATTTCAT TTGGCATTTT TTCGGGTATT CTTGGAAACG 1021 ATCCGGTTTG CCTGGGATTT ATTTCCAAAT TTTTATCCCC CCTGGGAAAG GAACAACGTT 1081 TCGAACCTGA ATTCTCCAAA ATTGAAAAAC TATAGGCGGC CTTTTTTCGG CCCTCGATCG 1141 GTTTTTTTTG AAAAT Predicted gene structure (within gDNA segment 26217 to 20323): Exon 1 24855 23942 ( 914 n); cDNA 70 983 ( 914 n); score: 0.888 Intron 1 23941 23629 ( 313 n); Pd: 0.833 (s: 0.81), Pa: 0.000 (s: 0) Exon 2 23628 23619 ( 10 n); cDNA 984 993 ( 10 n); score: 1.000 MATCH C08HBa0235H18.1- SGN-U338284+ 0.888 924 0.800 C PGS_C08HBa0235H18.1-_SGN-U338284+ (24855 23942,23628 23619) Alignment (genomic DNA sequence = upper lines): TTTGATAAGG GTGCCACCTC ACGAACTCAA TGCTATGAGC TCACCTTGGC CATTTGTAGC 24796 ||||| | || |||||||||| ||||||| || |||||||| |||||||||| |||||||||| TTTGAGACGG GTGCCACCTC ACGAACTTAA CGCTATGAGT TCACCTTGGC CATTTGTAGC 129 TTGGGGAATG GATGTCATCG GCCCTATAGA ACCGGTCGCT TCCAATGGAC ACAGATTTAT 24736 |||||||||| ||||||||| | ||||||| | |||| || ||||||| | ||||| || TTGGGGAATG GATGTCATCA GTTCTATAGA GTCTACCGCT TCTAATGGAC ATAGATTCAT 189 TTTGGTTGCC ATCGATTATT TCACCAAATG GGTGGAAGCA GCCTCTTACA AATCGGTAAC 24676 |||||||||| || ||||||| ||||||| || |||||||||| || |||||| | |||||||| TTTGGTTGCC ATTGATTATT TCACCAAGTG GGTGGAAGCA ACCCCTTACA AGTCGGTAAC 249 CAAGAAAGTG GTGGCCGACT TTGTCCGCAA CAATCTGATC TGCCGATTTG GAGTTCCAGA 24616 |||||||||| |||| ||| | |||| ||||| ||||||||| ||| |||||| |||||||||| CAAGAAAGTG GTGGTCGATT TTGTTCGCAA CAATCTGATA TGCAGATTTG GAGTTCCAGA 309 ATCCATCATC ACTGATAACG GTGCAAATCT CAACAGTCAT CTGATGAAAG AGATATGTGA 24556 ||||||||| |||||||||| | |||||||| |||||||||| |||||||| |||||| ||| ATCCATCATT ACTGATAACG GGGCAAATCT CAACAGTCAT TTGATGAAAC AGATATATGA 369 ACAATTTAAG ATTATTCACC GAAGGTCAAC TGCTTATCGC CCTCAAATGA ACGGAGCTGT 24496 |||||||||| ||||||| | ||| |||||| |||||||||| || ||||||| || ||||||| ACAATTTAAG -TTATTCATC GAAAGTCAAC TGCTTATCGC CCCCAAATGA ACAGAGCTGT 428 AGAGGCCGCC AACAAGAACA TCAAGAAGAT TCTGGGGAAA ATGATTGACA AGCAGCGGGG 24436 ||| |||||| ||||| || | |||||||||| | || ||||| |||||||||| | |||||||| AGAAGCCGCC AACAAAAATA TCAAGAAGAT TTTGAGGAAA ATGATTGACA AACAGCGGGG 488 TTGGCATGAA ATGTTGCCAT ATGCTCTACT GGGTTATCGA ACGACGGTCA GAACATCAAC 24376 |||||||||| |||||||||| ||||| | || ||||||||| |||||||||| ||||||| || TTGGCATGAA ATGTTGCCAT ATGCTTTTCT AGGTTATCGA ACGACGGTCA GAACATCGAC 548 TGGGGCTACT CCATACTTGC TAGTATACGG AACAGAAGCA GTCGTACCTG TCGAAGTCGA 24316 | |||||||| |||||||||| ||||||| || |||||| ||| ||||| |||| | |||||||| TTGGGCTACT CCATACTTGC TAGTATATGG AACAGAGGCA GTCGTGCCTG TTGAAGTCGA 608 GATACCGTCA CTGAGGATCA TCCAAGAAGC TGAGCTAAGT AATGCTGAGT GGGTTAGCAA 24256 |||||||||| || |||||| |||||||||| ||| ||||| || || || | || ||||||| GATACCGTCA TTGCGGATCA TCCAAGAAGC TGAATTAAGT AACGCCGAAT GGCTTAGCAA 668 ACGGATTGAT CAACTAGCCT TGATTGATGA AAAGAGGATG GTTGCCGTTT GCCATGGCCA 24196 || ||||||| |||||||||| | |||||| | ||||| || |||| ||||| |||||||| | ACAGATTGAT CAACTAGCCT TAATTGATAA GAAGAGAATA GTTG-CGTTT GCCATGGCAA 727 GTTGTATAGA CAAAGAATGA CTCGCGCTTT TCACAAAAGA GTAAGAGCCA GAAATTTTAA 24136 |||||| ||| || ||||||| |||||||||| |||||||||| |||||||||| | |||||| | GTTGTACAGA CAGAGAATGA CTCGCGCTTT TCACAAAAGA GTAAGAGCCA GGAATTTTGA 787 AGTTGGTCAG TTGGTTCTTA AGCGTATTTT TCCTCATCAA GACGAGTACA AAGGAAAGTT 24076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AGTTGGTCAG TTGGTTCTTA AGCGTATTTT TCCTCATCAA GACGAGTACA AAGAAAAGTT 847 CGCACCAAAC TGGCAAGGTC CTTACATGGT CCGCAAAGTA CTATCTGGAG GTGCTTT-AG 24017 ||| | | | ||||| |||| ||||| |||| || ||| || |||| |||| ||||||| | CGCGCTTACC TGGCAGGGTC CTTACTTGGT TCGTAAAATA TTATCGGGAG GTGCTTTGGG 907 TCTTGTCAGA GATGGATGGC GCTGTATGGC CCAAACCTAT CAACTCAGAT GCTGTCAAGA 23957 |||||| ||| ||| ||| | ||||| || |||||||||| ||||||||| ||||||||| TCTTGTTAGA CCCGGAAGGC GATGTATCGC CCAAACCTAT CAACTCAGAA TCTGTCAAGA 967 G-ATATTACG TGTGAAGTTC GTTTTGCATT TCCCACCATT TACTTGTAAT CTTCTGTTTG 23898 | ||| || | |||| GAATACTATG CCTGAA.... .......... .......... .......... .......... 983 CTTGTATTGG TTCGAATTTG AATTCTTATC CCTCTTGTAA CGAACTACGT CTGACCTGAA 23838 .......... .......... .......... .......... .......... .......... 983 TTCTCGAGAA TGAGATACGT AGGCGGCCTA TGTCGGCTTC GGTCACCCCA TTTATTCCCC 23778 .......... .......... .......... .......... .......... .......... 983 TTGATTATTC CTTACGTTAG AACTACGTTT GACCTGATTC CTGCCTCAAC GGGATACGTA 23718 .......... .......... .......... .......... .......... .......... 983 GGCGCCACAA CGGCTCGGTC ATATACCCAG AAGATTTCCA TTTCTCTCCA TAATGGAAAC 23658 .......... .......... .......... .......... .......... .......... 983 TGGGACAGAA TTTTTGAGAG GATCTCAAAA TTTCATTTG 23619 | ||||||||| .......... .......... .........A TTTCATTTG 993 hqPGS_C08HBa0235H18.1-_SGN-U338284+ (24855 23942) ******************************************************************************** EST sequence 69 +strand 735 n (File: SGN-U325967+) 1 AAAAGTGGGA AATGGATGTC ATTGGTCCTA TAGAGCCAAC CGCTTCTAAT GGACACAGAT 61 TCATTTTGGT TGCCACTGAT TATTTTACCA AGTGGGTTGA AGCAGCCTCT TACAAGTCGG 121 TAGCCAAGAA AGTGGTAGCC AATTTTGTCC GCAACAATCT GATATGCAGA TTTGGAGTTC 181 CAGAATCCAT CATTACTGAT AACGGTGCAA ATCTCAACAG TCATCTGATG AAAGAGATAT 241 GTGATCAATT CAAGATTATT CACCGGAGGT CAACTGCTTA TCGCCCTCAA ATGAACGGAG 301 TTGTAGAGGC CGCCAACAAG AATATCAAGA AAATTTTGAG GAAAATGATT GACAAGCAGC 361 GAGGTTGGCA TGAAATATTG TCGTATGCTC TACTAGGTTA TCGAACGACG GTCAGAACAT 421 CGACTGGGGC TACTCCATAC TTGCTAGTAT ACGGAACAGA AGCAGTCGTA CCTATTGAAG 481 TCGACATGCC GTCACTAAGG ATCATCCAAG AAGCTGAATT AAGTAACGCT GAGTGGGTTA 541 GCAAACGGAT TGATCAACTA ACTTTGATTG ATGAGAAGAG GATGGTCGCT GTTTGCCATT 601 GCCAGTTGTA TAGACAAAGA ATGACTCGCG CTTTTCACAA AAGAGTAAGA GCCAGAATTT 661 TGAAGTTGGC CAGTTGGTTC TTAAGCGTAT TTTTCCTCAT CAAGATGAGT ACAAAGGAAA 721 GTTCGCACCA AACTG Predicted gene structure (within gDNA segment 26686 to 23454): Exon 1 24794 24064 ( 731 n); cDNA 6 735 ( 730 n); score: 0.926 MATCH C08HBa0235H18.1- SGN-U325967+ 0.926 731 0.995 C PGS_C08HBa0235H18.1-_SGN-U325967+ (24794 24064) Alignment (genomic DNA sequence = upper lines): TGGGGAATGG ATGTCATCGG CCCTATAGAA CCGGTCGCTT CCAATGGACA CAGATTTATT 24735 |||| ||||| ||||||| || |||||||| || ||||| | |||||||| |||||| ||| TGGGAAATGG ATGTCATTGG TCCTATAGAG CCAACCGCTT CTAATGGACA CAGATTCATT 65 TTGGTTGCCA TCGATTATTT CACCAAATGG GTGGAAGCAG CCTCTTACAA ATCGGTAACC 24675 |||||||||| |||||||| ||||| ||| || ||||||| |||||||||| |||||| || TTGGTTGCCA CTGATTATTT TACCAAGTGG GTTGAAGCAG CCTCTTACAA GTCGGTAGCC 125 AAGAAAGTGG TGGCCGACTT TGTCCGCAAC AATCTGATCT GCCGATTTGG AGTTCCAGAA 24615 |||||||||| | ||| | || |||||||||| |||||||| | || ||||||| |||||||||| AAGAAAGTGG TAGCCAATTT TGTCCGCAAC AATCTGATAT GCAGATTTGG AGTTCCAGAA 185 TCCATCATCA CTGATAACGG TGCAAATCTC AACAGTCATC TGATGAAAGA GATATGTGAA 24555 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCCATCATTA CTGATAACGG TGCAAATCTC AACAGTCATC TGATGAAAGA GATATGTGAT 245 CAATTTAAGA TTATTCACCG AAGGTCAACT GCTTATCGCC CTCAAATGAA CGGAGCTGTA 24495 ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| CAATTCAAGA TTATTCACCG GAGGTCAACT GCTTATCGCC CTCAAATGAA CGGAGTTGTA 305 GAGGCCGCCA ACAAGAACAT CAAGAAGATT CTGGGGAAAA TGATTGACAA GCAGCGGGGT 24435 |||||||||| ||||||| || |||||| ||| || |||||| |||||||||| |||||| ||| GAGGCCGCCA ACAAGAATAT CAAGAAAATT TTGAGGAAAA TGATTGACAA GCAGCGAGGT 365 TGGCATGAAA TGTTGCCATA TGCTCTACTG GGTTATCGAA CGACGGTCAG AACATCAACT 24375 |||||||||| | ||| | || ||||||||| |||||||||| |||||||||| |||||| ||| TGGCATGAAA TATTGTCGTA TGCTCTACTA GGTTATCGAA CGACGGTCAG AACATCGACT 425 GGGGCTACTC CATACTTGCT AGTATACGGA ACAGAAGCAG TCGTACCTGT CGAAGTCGAG 24315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| GGGGCTACTC CATACTTGCT AGTATACGGA ACAGAAGCAG TCGTACCTAT TGAAGTCGAC 485 ATACCGTCAC TGAGGATCAT CCAAGAAGCT GAGCTAAGTA ATGCTGAGTG GGTTAGCAAA 24255 || ||||||| | |||||||| |||||||||| || |||||| | |||||||| |||||||||| ATGCCGTCAC TAAGGATCAT CCAAGAAGCT GAATTAAGTA ACGCTGAGTG GGTTAGCAAA 545 CGGATTGATC AACTAGCCTT GATTGATGAA AAGAGGATGG TTGCCGTTTG CCATGGCCAG 24195 |||||||||| ||||| | || ||||||||| |||||||||| | || ||||| |||| ||||| CGGATTGATC AACTAACTTT GATTGATGAG AAGAGGATGG TCGCTGTTTG CCATTGCCAG 605 TTGTATAGAC AAAGAATGAC TCGCGCTTTT CACAAAAGAG TAAGAGCCAG AAATTTTAAA 24135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| || TTGTATAGAC AAAGAATGAC TCGCGCTTTT CACAAAAGAG TAAGAGCCAG -AATTTTGAA 664 GTTGGTCAGT TGGTTCTTAA GCGTATTTTT CCTCATCAAG ACGAGTACAA AGGAAAGTTC 24075 ||||| |||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GTTGGCCAGT TGGTTCTTAA GCGTATTTTT CCTCATCAAG ATGAGTACAA AGGAAAGTTC 724 GCACCAAACT G 24064 |||||||||| | GCACCAAACT G 735 hqPGS_C08HBa0235H18.1-_SGN-U325967+ (24794 24064) ******************************************************************************** EST sequence 1 +strand 881 n (File: SGN-U342328+) 1 TGGAGCTCCC CGCGGTGGCG GCCGCTCTAG AACTAGTGGA TCCCCCGGGC TGCAGGAAAA 61 GATCTTAGTC TCTAATAAAT AACAACTCAT AGACATTCAT GTCGATGACC ATTTTCTAAC 121 TAAGAACACA AGCTTCGTAT TCGGCCATGT TGTTCGTGCA ATTAAATCGA AGCTTAGTCG 181 CCATGGAATA GTGCTGATCG GATTCTGACA CTAAGATTGC TTCAATACCT TTACCTTGAT 241 GATTCGCCAC TCCATCAAAG AATAATCTCC AACCTGGATA CTCTTCAGAA ATATCCTCAC 301 CCACAAATGA CACTTCTTCA TCATAAAAGT TAGTCTTAAG AGGTTCATAC TCTTCATCAA 361 CAGGATTTTC GGGAAGATAT AGTTCAGTGG ATCCATTCTT AAAATGGGTA TGTTGTATAA 421 TAAGACAAAT AATGTCTCAA CTTCTGGGCA AGCCACGTCA AAGCACAACA CGTTGTCTCC 481 AACAAAGTGT AACGAGACTC CTATGGAGAA AACTTCTTGA TTATATAATA GATAGCCCTT 541 TCCTTCTTTC CTGTCTCATC GTGCTGACCA AGTATGCATC TGAATGCTCT ATCTAAGACA 601 TACAAGTACA ACAACAAAGG ATTCCCTTCT CGCGGACGAA CAAATACCAG TGGATGTGAC 661 AAATAGTTCT TGATAGCATC AAAAGTAGTC TTATACTCTT TAGNTCATTT TGTCGGGGCG 721 TCTTTCTTCA GCAGCTTGAA AATAAGCTCG CACACCCCAT TGATTGAGCT ATTAATCGAC 781 TGATGTAGGT TAACTTTCCT AAGAAACTCT CACCTCTTTT CTCGGCTTTG GAGAAGGAGC 841 TCTTGAATTG CCTTTAATCT TTGAAGGGCC GAGCTCAATC C Predicted gene structure (within gDNA segment 22559 to 31570): Exon 1 25459 25775 ( 317 n); cDNA 60 376 ( 317 n); score: 0.833 Intron 1 25776 25890 ( 115 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.76) Exon 2 25891 26396 ( 506 n); cDNA 377 879 ( 503 n); score: 0.795 MATCH C08HBa0235H18.1+ SGN-U342328+ 0.810 823 0.934 C PGS_C08HBa0235H18.1+_SGN-U342328+ (25459 25775,25891 26396) Alignment (genomic DNA sequence = upper lines): AGGTCTGAAT CTCCAATAAC CAGTAACTCG TAAACATTCA TGTCAACGGC CATTTTCAAA 25518 || ||| | | ||| ||||| | ||||| || ||||||| |||| | | | ||||||| || AGATCTTAGT CTCTAATAAA TAACAACTCA TAGACATTCA TGTCGATGAC CATTTTCTAA 119 CCGAGAATGC AAGCTTCATA CTCAGCCATG TTGTTTGTGC AGTTGAACCG TAGCTTAGCC 25578 | |||| | ||||||| || || |||||| ||||| |||| | || || || ||||||| | CTAAGAACAC AAGCTTCGTA TTCGGCCATG TTGTTCGTGC AATTAAATCG AAGCTTAGTC 179 GCCATAGGAT AGTGCTGACC AGATTCTGAT ACCAAGACTG CTCCAACACC TTTACCCTGG 25638 ||||| | || |||||||| | |||||||| || |||| || || ||| ||| |||||| || GCCATGGAAT AGTGCTGATC GGATTCTGAC ACTAAGATTG CTTCAATACC TTTACCTTGA 239 TGATTCACCG CTCCATCAAA GAATAATCTC CAACCTGGAT AAACTTCAGA GATATCTTCA 25698 |||||| || |||||||||| |||||||||| |||||||||| | ||||||| ||||| ||| TGATTCGCCA CTCCATCAAA GAATAATCTC CAACCTGGAT ACTCTTCAGA AATATCCTCA 299 CCCACAAATG ACACTTCTTC ATCGTGAAAA TATGTCTTGA GAGGTTCATA CTCTTCATCA 25758 |||||||||| |||||||||| ||| | ||| | ||||| | |||||||||| |||||||||| CCCACAAATG ACACTTCTTC ATCATAAAAG TTAGTCTTAA GAGGTTCATA CTCTTCATCA 359 ACGGGATTTT CCGCAAGATG ATCAGCCAAA GCTTGTGCTT TTATTGCCTT CTGAGTCACG 25818 || ||||||| | | ||| ACAGGATTTT CGGGAAG... .......... .......... .......... .......... 376 TACACGATGT CAAACTCACT CAACAGCATT TGCCATTTAG CCAGCTTCCC GGTCGGCATC 25878 .......... .......... .......... .......... .......... .......... 376 GCTTTCCGGA AAATATACTT CAATGGATCC ATTCTGGAGA TAAGATATGT AGTATACGAC 25938 ||||| || || ||||||| ||||| | | | | ||||| ||||| | .......... ..ATATAGTT CAGTGGATCC ATTCTTAAAA T-GGGTATGT TGTATAATAA 423 GACAAATAGT GCCTCAGCTT CTGGGCAAGC CATGTCAGAG CACAGCATGT TCTTTCCAGC 25998 |||||||| | | |||| ||| |||||||||| || |||| || |||| || || | | |||| | GACAAATAAT GTCTCAACTT CTGGGCAAGC CACGTCAAAG CACAACACGT TGTCTCCAAC 483 AAAGTGTAAC GAGACTCGTA CGGAGTAAAC TTCTTGCTGA TGTAGTAGAT AGCTTTTTCC 26058 |||||||||| ||||||| || |||| |||| |||||| | | | || ||||| ||| ||||| AAAGTGTAAC GAGACTCCTA TGGAGAAAAC TTCTTGATTA TATAATAGAT AGCCCTTTCC 543 TTCTTCCCTG TCTCGTCGTG TTGACCAAGT ACACATCCAA AGACGTTATC CGAGACAGAC 26118 ||||| |||| |||| ||||| ||||||||| | |||| | | | |||| ||||| || TTCTTTCCTG TCTCATCGTG CTGACCAAGT ATGCATCTGA ATGCTCTATC TAAGACATAC 603 AAATATAGCA ACAAAGGACT CCCTTCTCGC GGAGGAACCA ATACTGGTGG GTTAGACAAG 26178 || || | || |||||||| | |||||||||| ||| |||| | |||| |||| | ||||| AAGTACAACA ACAAAGGATT CCCTTCTCGC GGACGAACAA ATACCAGTGG ATGTGACAAA 663 TAGCTCTTGA TAGCGTCGAA AGCGGTCTGG CACTCCTCAG TCCACTTAGT TGGGGCATCT 26238 ||| |||||| |||| || || || |||| |||| | || || || || ||||| ||| TAGTTCTTGA TAGCATCAAA AGTAGTCTTA TACTCTTTAG NTCATTTTGT CGGGGCGTCT 723 TTCTTCAGCA ACTTGAAGAT AGGCTCACAT ACCACCGTCG ATTGTGCTAT AAAACGGCTG 26298 |||||||||| |||||| || | |||| || ||| || | | |||| ||||| || || ||| TTCTTCAGCA GCTTGAAAAT AAGCTCGCAC ACC-CCATTG ATTGAGCTAT TAATCGACTG 782 ATATAGTTTA ACCTCCCTAA GAAGCTCATC ACCTCTTTTC TCGTCTTCGG CGGAGGTAAC 26358 || ||| ||| || | ||||| ||| ||| || |||||||||| ||| ||| || | ||| | | ATGTAGGTTA ACTTTCCTAA GAAACTC-TC ACCTCTTTTC TCGGCTTTGG AGAAGG-AGC 840 TCCTGAATTG -CTTTGATCT TGGAAGGGTC GAGCTCAAT 26396 || ||||||| |||| |||| | |||||| | ||||||||| TCTTGAATTG CCTTTAATCT TTGAAGGGCC GAGCTCAAT 879 hqPGS_C08HBa0235H18.1+_SGN-U342328+ (25459 25775,25891 26396) ******************************************************************************** EST sequence 19 +strand 796 n (File: SGN-U345356+) 1 TTGAAACCCA TGCTGGAGCT CCACCTTGAA ACCAAAGCTG GAGCTCCACC GCGGTGGCGG 61 CCGCTCTAGA ACTAGTGGAT CCCCCGGGCT GCAGGAATTC GGCACGAGGA AGGCTGGTTC 121 TGAGTTGGAT CTATGTTTGA TGAAGGGAAG TAGACCGGAG GTCTTGCATC AGCAATATTA 181 GTACCAAATC CAGGTGGAGG CGCATCCTGT CTCCGTTGCA TTTCAACTTT CATTTCAGCA 241 ATCTGTTGCA TCAGTTGCAT GATCAATTCA TTCTGTTCCA CTACAGTGGG CTGAGCGACC 301 ACAACGTCAG TAAGACGCCC TTCGTCATTG TTGTCTCCCA TAACTGTTTT TCCTTTATCT 361 GAATTTGATC GAGGGAAGGA ATCTGTAGGA CCTTTCGATC TGGTGAAGTA AGGATGATCT 421 GCCAGCTTTA TTGACACAGA TCAGTAAAAA GGTACCTGAA AGGTAAAAAC AACTCAAAGG 481 CAAATTTGTT AGTGCATATC CAGAGTACAA AATGCTTAAT ATCGCACATA AAACCGATAA 541 ACACACAAGT CGTTTTGTTT GAGGATATCT TAACCCACGA ATAAGGACGG ATATATATTT 601 TGAACAAACA GGAATTTGTT TGTTTGGCGT TATCTTGGGA AATCTGAATC ACGTTGAGCT 661 ATGGTCTTCT TGCAGCTGCT TTGCGAAGTC CCGTGATCTT ATCTTCGTAT CTTCGAAACA 721 TGGAGGAGAA TGAAAATTTT TGGGTTAGGG GCCGGGCCAA GAAGGCTTGC TTACGTTCTA 781 ACGGGGAGAT TCAGGG Predicted gene structure (within gDNA segment 29261 to 32741): Exon 1 30942 31628 ( 687 n); cDNA 110 795 ( 686 n); score: 0.948 MATCH C08HBa0235H18.1+ SGN-U345356+ 0.948 687 0.863 C PGS_C08HBa0235H18.1+_SGN-U345356+ (30942 31628) Alignment (genomic DNA sequence = upper lines): AAGGCTGGTT CTGAGTTGGA TCTATGTTTG ATGAAAGGAA GTAGACCGGA GGTCTTGCAT 31001 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AAGGCTGGTT CTGAGTTGGA TCTATGTTTG ATGAAGGGAA GTAGACCGGA GGTCTTGCAT 169 CAGCAATATT AGTACCAAAT CCAGGTGGAG GCGCATCCTG TCTCCGTTGC ATTTCAACTT 31061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATATT AGTACCAAAT CCAGGTGGAG GCGCATCCTG TCTCCGTTGC ATTTCAACTT 229 TCATTTCAGC AATCTGTTGC ATCAGTTGCA TGATCAATTC GTTCTGTTCC ACTACAGTGG 31121 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TCATTTCAGC AATCTGTTGC ATCAGTTGCA TGATCAATTC ATTCTGTTCC ACTACAGTGG 289 GCTGAGCCAC CACAACGTCT GTAAGACGCC CTTCGTCATT GTTGTCTCCC ATAACTATTT 31181 ||||||| || ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GCTGAGCGAC CACAACGTCA GTAAGACGCC CTTCGTCATT GTTGTCTCCC ATAACTGTTT 349 TTCCTTTGTC TGAATTTGAT CGAGGGAAGG AATCTGTAGG ACCTTTTGAC CTGGTGAAGT 31241 ||||||| || |||||||||| |||||||||| |||||||||| |||||| || |||||||||| TTCCTTTATC TGAATTTGAT CGAGGGAAGG AATCTGTAGG ACCTTTCGAT CTGGTGAAGT 409 AAGAATGATC TGCCAGCTTT ATCGACACAG ATCAGT-AAA AGGTACCTGA GAGGTAGAAA 31300 ||| |||||| |||||||||| || ||||||| |||||| ||| |||||||||| ||||| ||| AAGGATGATC TGCCAGCTTT ATTGACACAG ATCAGTAAAA AGGTACCTGA AAGGTAAAAA 469 CAACTCAAAG GCAAATTTGT TAGTGCATAT CCAGAGTACA AAATGCATAA TATCGCACAT 31360 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CAACTCAAAG GCAAATTTGT TAGTGCATAT CCAGAGTACA AAATGCTTAA TATCGCACAT 529 AAAACAGATA AGCACACAAG TCGTTTTGTT TGAGGATATC TTAACCCACG AATAAGGACG 31420 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCGATA AACACACAAG TCGTTTTGTT TGAGGATATC TTAACCCACG AATAAGGACG 589 GATATATATT TTGAACAAAC AGGAATTTGT TTGTTTGGAG ATATCTTGGG AAATCTGAAT 31480 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| GATATATATT TTGAACAAAC AGGAATTTGT TTGTTTGGCG TTATCTTGGG AAATCTGAAT 649 CACGTTGAGC TATGGTCTTC TTGCAGCTGC TTTGCGACGT CTGTTGATCT TATCTTCGTA 31540 |||||||||| |||||||||| |||||||||| ||||||| || | |||||| |||||||||| CACGTTGAGC TATGGTCTTC TTGCAGCTGC TTTGCGAAGT CCCGTGATCT TATCTTCGTA 709 TCTCCGAAAC ATGGAGGAGA ATGAAAATTT TCTGTGATAG GGGCCGGGCC GGGAAGGC-T 31599 ||| |||||| |||||||||| |||||||||| | || | ||| |||||||||| |||||| | TCTTCGAAAC ATGGAGGAGA ATGAAAATTT T-TGGGTTAG GGGCCGGGCC AAGAAGGCTT 768 GCCTACGTAT CTCACGGGGA GAATTCAGG 31628 || ||||| | || ||||||| | ||||||| GCTTACGT-T CTAACGGGGA G-ATTCAGG 795 hqPGS_C08HBa0235H18.1+_SGN-U345356+ (30942 31628) ******************************************************************************** EST sequence 25 +strand 770 n (File: SGN-U346850+) 1 CTAAGCTGGA GCTCCACCGC GGTGGCGGCC GCTCTAGACT AGTGGATCCC CCGGGCTGCA 61 GGCGAAAATG GAGGCTTGTA GACGATTTCT TCTTCATCAT CCTCCTCAGT CACTTCACGG 121 TCGGGGCCAC TGTTATCTGC TCCCAGATCA TGGGCGAGGT ATTTTCCGCC CTTTGGGTCG 181 CTATGGGTCG CCAATTCCTC GTCGAGCGCC GCGTTTCTGT CCAACAACAC AGCAGTCTCG 241 ATATCTATCT TCGCCTCTCT CGCCTTTCCT TCGTGTATCT CTAAACGAAG CAAGTTCAAC 301 CTTTTCCTTA GGCTTTCGGT TTCCATCTCA ACCTCCTTCT TTCTCTTTAT CTGTGACGCC 361 AGATCTTCAT CCAATGTTGT GACCGCAGCT TTGTAGATCG CCGTGGTCGC GTCTACTTTG 421 AGTCCTTCTT CCTTAACCTT CTGAATCTCT CGAGGGGGGG CCCGGTACCC AATTCGCCCT 481 ATAGTGAGTC GTATTACAAT TCACTGGCCG TCGTTTTACA ACGTCGTGAC TGGGAAAACC 541 CTGGCGTTAC CCAACTTAAT CGCCTTGCAG CACATCCCCC TTTCGCCAGC TGGCGTAATA 601 GCGAAGAGGC CCGCACCGAT CGCCCTTCCC AACAGTTGCG CAGCCTGAAT GGCGAATGGC 661 AAATTGTAAG CGTTAATATT TTGTTAAAAT TCGCGTTAAA TTTTTGTTAA ATCAGCTCAT 721 TTTTTAACCA ATAGGCCGAA ATCGGCAAAA TCCCTTATAA ATCAAAAGAT Predicted gene structure (within gDNA segment 30561 to 35942): Exon 1 31775 32171 ( 397 n); cDNA 57 453 ( 397 n); score: 0.967 MATCH C08HBa0235H18.1+ SGN-U346850+ 0.967 397 0.516 C PGS_C08HBa0235H18.1+_SGN-U346850+ (31775 32171) Alignment (genomic DNA sequence = upper lines): TGCAGTCGAA AATGGAGGCT TGTAGACGAT TTCTTCTTCA TCATCCTCCT CAATCACTTC 31834 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TGCAGGCGAA AATGGAGGCT TGTAGACGAT TTCTTCTTCA TCATCCTCCT CAGTCACTTC 116 ATGGCCGGGG CCACTGTTGC CTGTTCCCTG ATCACGGGCG AGGTATTTTC CGCCCTTTGG 31894 | || ||||| |||||||| ||| |||| | |||| ||||| |||||||||| |||||||||| ACGGTCGGGG CCACTGTTAT CTGCTCCCAG ATCATGGGCG AGGTATTTTC CGCCCTTTGG 176 GTCGCTATGG GTTGCCAATT CCTCGTCGAG CGCCGTGCTT CTGTCCAACA ACACAGCAGT 31954 |||||||||| || ||||||| |||||||||| ||||| | || |||||||||| |||||||||| GTCGCTATGG GTCGCCAATT CCTCGTCGAG CGCCGCGTTT CTGTCCAACA ACACAGCAGT 236 CTCGATATCT ATCTTCGCCT CTCTCGCCTT TCCTTCGTGT ATCTCCAAAC GAAGCAAGTT 32014 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CTCGATATCT ATCTTCGCCT CTCTCGCCTT TCCTTCGTGT ATCTCTAAAC GAAGCAAGTT 296 CAACCTTTTC CTTAGGCTTT CGGTTTCCAT CTCAACCTCC TTCTTTCTCT TTATCTGTGA 32074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTTTTC CTTAGGCTTT CGGTTTCCAT CTCAACCTCC TTCTTTCTCT TTATCTGTGA 356 CGCCAGATCT TCATCCAATG TTGTGACCGC AGCTTTGTAG ATCGCCGTGG TCGCGTCTAC 32134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCAGATCT TCATCCAATG TTGTGACCGC AGCTTTGTAG ATCGCCGTGG TCGCGTCTAC 416 TTTGAGTCCT TCTTCCTTAA CCTTCTGAAT CTCTCGA 32171 |||||||||| |||||||||| |||||||||| ||||||| TTTGAGTCCT TCTTCCTTAA CCTTCTGAAT CTCTCGA 453 hqPGS_C08HBa0235H18.1+_SGN-U346850+ (31775 32171) ******************************************************************************** EST sequence 76 +strand 767 n (File: SGN-U321902+) 1 CTTTATGAGA GTTTTAACCA ATATGAATTT ATTTTATTTT TTTCAAATTG AGAAAATTTT 61 TGTTTTATTA TTATGTTATA CCTTGTATTT TTATATTCGC TGATTATTTG TATATTGTAT 121 TTATTCATTA TTTATCTTGT TGTTGGTATA TTATCATTGC ATTCATGGCA TAATATTTTC 181 CGTCAAACGA TAATTATTTC ATTTTCACTA AAGGACGATT ATGCAGGTTC GCAGTCGTTC 241 ATTAACCAAA GATTTTCTCG GGACACCCTG ACGAGTGTAG TTGGCTACTT GATAGTCAAC 301 GATCATTAAC TGTCCCAACC CAAGTAGTCC GCTTGGATCA CCTTTTCCAC TCAAAATAAA 361 ACCCACTCCT AGTCAACTAG TGTAGAGCCG AGCCAAATTC CGAAAATAGC GCCATTTGAA 421 CTAAGATGAC TCAATACCCA AGGCGTGTTG AGCCCATTAG AAGACCACCT TGAGTCTAAA 481 ACAGTCCACT GCCTAAATGG ACGTTCATAC TTATGTGTTT AAATTTGAAG GGTGTATACG 541 TTGTTTGAGA AAATCATTGT CTCATAGGGT AAAAATTAAG TTATAGTTTG CTTAGGTTAA 601 AGAAAGAGCT TCACCGGCTA CTAGCATATT CGAAGATATT GGCACCCGGG GATGACAACA 661 AATCAAGAAA GCAGAAGGAT CTTTCGTGGA GGCATAGTTT AGGGTCATAT CCCTGTGTGG 721 GACTGATTAT TTTGTATACA TTTCCCCTAT TATGATCCCC ATTCAGT Predicted gene structure (within gDNA segment 37847 to 29625): Exon 1 36411 36387 ( 25 n); cDNA 101 124 ( 24 n); score: 0.840 Intron 1 36386 36274 ( 113 n); Pd: 0.000 (s: 0), Pa: 0.735 (s: 0) Exon 2 36273 36256 ( 18 n); cDNA 125 142 ( 18 n); score: 0.722 Intron 2 36255 35481 ( 775 n); Pd: 0.000 (s: 0), Pa: 0.998 (s: 0) Exon 3 35480 35476 ( 5 n); cDNA 143 146 ( 4 n); score: 0.600 Intron 3 35475 34738 ( 738 n); Pd: 0.000 (s: 0), Pa: 0.982 (s: 0.66) Exon 4 34737 34280 ( 458 n); cDNA 147 601 ( 455 n); score: 0.755 Intron 4 34279 32261 (2019 n); Pd: 0.000 (s: 0.60), Pa: 0.774 (s: 0) Exon 5 32260 32246 ( 15 n); cDNA 602 615 ( 14 n); score: 0.733 PPA cDNA 43 32 MATCH C08HBa0235H18.1- SGN-U321902+ 0.755 521 0.679 C PGS_C08HBa0235H18.1-_SGN-U321902+ (36411 36387,36273 36256,35480 35476,34737 34280,32260 32246) Alignment (genomic DNA sequence = upper lines): TGTTTATTCT CTATAATGTA TTTATCTCCC AAACTTGTTA TCTTGTTTAG ATATCATGTT 36352 || ||||| | |||| |||| ||||| TGATTATT-T GTATATTGTA TTTAT..... .......... .......... .......... 124 TGTCAGGCGT CTTGCATGAA AGTTTCGTTT TGTATGCCGT ATGGGTGGTG TGGATTTTGG 36292 .......... .......... .......... .......... .......... .......... 124 AAATCTGTGG TTTGAAAGGC CATCTTTATC TTGGTGGCCA CTTGTGTTAG CTGTCCGAGG 36232 | | |||||| ||| || .......... ........TC ATTATTTATC TTGTTG.... .......... .......... 142 TCACAGCCAT GTAGTAGGTC GATTGAATGG TCCTTTCGCT TAGTGTGTTA GATGTTTGGG 36172 .......... .......... .......... .......... .......... .......... 142 TGATAAGGTG ATCGGGATCC TGTTTTATTT GATGAGGCTG TCCTCTTATG ATTGGTTCAA 36112 .......... .......... .......... .......... .......... .......... 142 GTTTGTTTCA AATGTTTGAA GCGCAAAACG GCTAATTGAT ACTCAATTTA TGATGCATCT 36052 .......... .......... .......... .......... .......... .......... 142 CTATTTGTAT TCGTTATTTA TCCCATGCTA AGTCCTTTCT TTAAATATAA AATTTGGAAA 35992 .......... .......... .......... .......... .......... .......... 142 TTACCAACAA TTTTGTGTGA AGGTTTCACT ACACTTGGGG TTTCGCCGCA CAGTTTATGT 35932 .......... .......... .......... .......... .......... .......... 142 ATCGTTATGT AGTGTCATTT AGGTTGACTG ATTTGCATAT CTCTAAGTAC CATTAAGGTT 35872 .......... .......... .......... .......... .......... .......... 142 GTTGGATGTT GGCTTTGCTT CTCATGAAGA TTTAATTAGT ATTGCATTAT AAAGATATCC 35812 .......... .......... .......... .......... .......... .......... 142 TTGTTATGCT TTAGAACCTT GCTTATTCTA ATTGTAGTTT TAAAAATGCC AATCTTCATT 35752 .......... .......... .......... .......... .......... .......... 142 TTATCGTTTT TTTTGTGACA TGTGAAAACT CCCCGTGAGT CCATTATGGG AATCTTATTA 35692 .......... .......... .......... .......... .......... .......... 142 TCCTCCTCGC ATTTCGAGAG AGTCTTGAAG ACTCTGAACT TTATCGAGTC AATTCATCAA 35632 .......... .......... .......... .......... .......... .......... 142 AACGAGCAAG TGTAGAAAGA CAAGGGTCAT GGAGATTGAA GACGATGGAC TAAAAGACTT 35572 .......... .......... .......... .......... .......... .......... 142 TTCTTTCGTT TTATTTTACT TTGCATATTT TGTAATGGGC CTAAGCCCTC TTGTCGTTTT 35512 .......... .......... .......... .......... .......... .......... 142 TTTGTTTTCT ATATTATGTT TGTATGTTTA GATTAGGACA GGTACAGAAA TGGGCTAAAA 35452 || | .......... .......... .......... .-TTGG.... .......... .......... 146 AACCCAAAGG CAGGTGGGTC CAACATTCGG TCAAGGATAA CAGAACCCGG AGTTGGACCC 35392 .......... .......... .......... .......... .......... .......... 146 AAATCTCTCT CTCTCTATCC TTCTCTTTAC TATTTGCTTA TCTTATTTTG TTTTCAATGC 35332 .......... .......... .......... .......... .......... .......... 146 CGTTAGCTTA GGATTAGGAA ACTCCAAACC CTCATCGAAC GCCTGTTATT TTATCAAACC 35272 .......... .......... .......... .......... .......... .......... 146 TAAAAAATTT TAAAACTAAC TTCTAAATGA TAAATTGTTT CAAATTCGTA AGGCTTGTTT 35212 .......... .......... .......... .......... .......... .......... 146 AGATAAAACC TTGAGTAAGC TTAACTTTGA AATGGTTTCG TAAACTGGCA AGATAAACAA 35152 .......... .......... .......... .......... .......... .......... 146 TAAATATTTC AAAATTGGCT AAGTTTGGCT AAGTAAGTCA TGTTAAAAGT TCAAATAAAT 35092 .......... .......... .......... .......... .......... .......... 146 TTGCAAAGGT TAAAAATAAA AATAATCAAA TAGTTAATCA TTGGAAAACC GTAAGTTAAC 35032 .......... .......... .......... .......... .......... .......... 146 GGAGTGTTTT GGGTGCCTTA CACCTTCCTA AGATACTAAT AGGAATCCCG AACCCTTAAA 34972 .......... .......... .......... .......... .......... .......... 146 ATGTTTCAAA ACAATTTTTT CTGTTTAAGT TGTTTAGAAA CGAAGTTTTC TTGATTTTTC 34912 .......... .......... .......... .......... .......... .......... 146 TTAAAAATTA AGTGGCGACT CCTAAAAGTC TAAAAACAAA CTCTTTTCGA AAATCACCAC 34852 .......... .......... .......... .......... .......... .......... 146 CCTTTTTCGA TAAAACAGAA ATGGCGACTC CACTGGGGAC TTGGAGGATT CTAACCTTAA 34792 .......... .......... .......... .......... .......... .......... 146 GATTAACGTA TTTGATTATT TGTGATTAAC TGTTTAAATG TTTAAATTGT TTAGATTTTT 34732 | || .......... .......... .......... .......... .......... ....TATATT 152 AAACTGCTGC ATACATAGCA TACATA-CTT CCGTCAAACG ACACTTTTTT ACATTTCCAC 34673 | | ||| || ||| ||| || ||| || |||||||||| | | || ||| ||||| ||| -ATC-ATTGC ATTCATGGCA TA-ATATTTT CCGTCAAACG ATAATTATTT -CATTTTCAC 208 TAAAGGACGA TTATGCGGGT TCGCAGTCGT TCGTTAACCA AAAATCTTCT CGGGGCACCC 34613 |||||||||| |||||| ||| |||||||||| || ||||||| || || |||| |||| ||||| TAAAGGACGA TTATGCAGGT TCGCAGTCGT TCATTAACCA AAGATTTTCT CGGGACACCC 268 TGACGAGTGT AGTTGATTAC TTGATAGTCA ACGATCGTTA ATTGTTCCAG CCCAAGTAGT 34553 |||||||||| ||||| ||| |||||||||| |||||| ||| | ||| ||| |||||||||| TGACGAGTGT AGTTGGCTAC TTGATAGTCA ACGATCATTA ACTGTCCCAA CCCAAGTAGT 328 CCGCTTGGGT TACCCATTCC ACTCTAAATA CAACCCACTC TTAGTCAAAC TAGGATAGAG 34493 |||||||| | ||| |||| |||| ||||| ||||||||| ||||| ||| ||| ||||| CCGCTTGGAT CACCTTTTCC ACTCAAAATA AAACCCACTC CTAGTC-AAC TAGTGTAGAG 387 CGAAACCAAA TCCCGAAAAT AGCG-CA-TT GGCCTAAGAT GACCCGACAC CCAAGGAGTG 34435 | | ||||| | |||||||| |||| || || | ||||||| ||| | | || |||||| ||| CCGAGCCAAA TTCCGAAAAT AGCGCCATTT GAACTAAGAT GACTCAATAC CCAAGGCGTG 447 TCGGGCCCAT TAGAAAAGTC CACCTTGAGT C-CAAAGAGC CTGCGGCTCG ATAGGACGCT 34376 | | |||||| ||| ||| | |||||||||| | ||| || | | || | ||||| | TTGAGCCCAT TAG--AAGAC CACCTTGAGT CTAAAACAGT CCACTGCCTA AATGGACGTT 505 CATGTTTGT- TGTTTAAATT TGAAGGATGT ATTGCGTGTT T-AACGAGTT GTTGTATCGG 34318 ||| || | |||||||||| |||||| ||| || |||| | | | | |||| || CATACTTATG TGTTTAAATT TGAAGGGTGT ATACGTTGTT TGAGAAAATC ATTGTCTCAT 565 GGGGATTGAA AATTAACTAG TTGTATGTTT TTGTAGATGT CAAGTCAGTT CCTTCACTTC 34258 ||| | || |||||| | | || || || || | AGGG--TAAA AATTAAGTTA TAGTTTGCTT AGGTTAAA.. .......... .......... 601 AAAATGGTCA CCCAGGCACC CGACATTCTT CGAGTATGGT GGGAAAATCT TAAGGAGTGT 34198 .......... .......... .......... .......... .......... .......... 601 CAGAAGAGAG AGATCTCGAT TTACTTGGGT CACCTACCTT CGATAATGGA CTTCAAGGTA 34138 .......... .......... .......... .......... .......... .......... 601 TGGCCCACGT TTATCGAAGT CATCACCCGA TTCTGGGACG ATAAGAAGAT GGTCTTTCGA 34078 .......... .......... .......... .......... .......... .......... 601 TTTGGAGATG TCGAAATAAA ACCCACATTA GAAGAGATCA AAGATTGCCT TGACTCGATT 34018 .......... .......... .......... .......... .......... .......... 601 GGGACGTGTG GCAAAAGGAA AAAGCGTCCC GATCATCACA TTCTCCTGCC AGATAGGCCA 33958 .......... .......... .......... .......... .......... .......... 601 ACCGAGACTG AGCTAAGAGA CATATTATCC CTAGTGAATG CGAATTGGCT AGAGACTCAC 33898 .......... .......... .......... .......... .......... .......... 601 AACATTCCAC TGATGAGGTT TTTCGAGAGG TGGGGGCACG ACAATTATTT TAGATTGTTC 33838 .......... .......... .......... .......... .......... .......... 601 CCGGACGAAT TCCATGATCA CAGTACTTGG AGGCAAACTC AAGCTATCGC TTTCTCCGCA 33778 .......... .......... .......... .......... .......... .......... 601 TGCCTCTTGG GAACTATGGT GTTCCCTAAA GACGAAGGAA AAGAGATCGA CACCCGGGTA 33718 .......... .......... .......... .......... .......... .......... 601 ATAATGGTAG TGAATGCCAT GTTCAGAGGA GTCGGTAGAA AATCTGAAGA AAAGAAATAT 33658 .......... .......... .......... .......... .......... .......... 601 TGCTGTTTGG CCCCAGTCAT CCTGTCCGAC ATTTACCGAT CTTTGAGCCT GTGCAAGAAT 33598 .......... .......... .......... .......... .......... .......... 601 GGTTTTCCGT TTTTCCAAGG TTGCAACATC TTACTTCAAT GGTGGTTGAC GGAGCATCTA 33538 .......... .......... .......... .......... .......... .......... 601 TGCAAAAGAG ACAACCCCCA GCTACATGGT TTGGCCGAAC CAAGTCAAAC AAGTCCTCTC 33478 .......... .......... .......... .......... .......... .......... 601 AATAATTACG AGTTCTACTT GAGTATCCGT AAATTTCCAA TTCACACCAC CAGGGATGCG 33418 .......... .......... .......... .......... .......... .......... 601 TGGGCAAAGG TGTTTTACAA TTTGAAAGAA GGAGACATAC AATGGGTATT ACCGAGCTTC 33358 .......... .......... .......... .......... .......... .......... 601 AGGTCTCAGA TGATAGCAGC CCAAGGGGCC AAATTGCCAT TTTTAGTCCT TCCCGGCATC 33298 .......... .......... .......... .......... .......... .......... 601 AGAGGATTGC GTCCTTACAA CCCGACACGA GTAATGCGGC AATTTGGGAA AGTCCAAATC 33238 .......... .......... .......... .......... .......... .......... 601 ATACCCGCCC AAGGAGATGC CAGCTCTTTC ATTGTTGATT ACAACGGGAA GGACAAAATA 33178 .......... .......... .......... .......... .......... .......... 601 CCTTTCGCTA AAATTATCCT CCAGGAATGG GCCGGACGTG TCAACATGAA GTGGGAGGTC 33118 .......... .......... .......... .......... .......... .......... 601 ACCGAAGATA GGTATGGAGC TGGGTATGTC GACGAATATA AGACATGGTT GCATAATAAT 33058 .......... .......... .......... .......... .......... .......... 601 TTGCATGGTG TAGTGGATCC GACACCACGC ACAAGTCGGA AAATCGAAGA CGTGGAGACA 32998 .......... .......... .......... .......... .......... .......... 601 AGGCTTCAGA TTCACGCGTA CCATTTTCAG CAAGAGTGGG ACCGGAGGGA GCAGGAATTC 32938 .......... .......... .......... .......... .......... .......... 601 TATAAGAAAG AACAGGAATT TCAACAAAGG GAGCAAGCGT ACCAACTCCG GGAATTAGAA 32878 .......... .......... .......... .......... .......... .......... 601 AATCAGAGAG TTTTAGCCGT AATGTCACAA GAATTAGCTG ACACAAGGAC TTGTCTAATG 32818 .......... .......... .......... .......... .......... .......... 601 CGTTTGGACA CTATTTTGGA CGAGCAGATG AACACCTTAC AAGCCGTACC AACATCTTCC 32758 .......... .......... .......... .......... .......... .......... 601 AAAGCTGCGT TCGCGGAGCC ATACGTGTTC ACCAGCAAAT GCATTATCCG AGAAGAAGTG 32698 .......... .......... .......... .......... .......... .......... 601 GAGAAGGCCA GAAGAGGAGC TGGATCATCG ACCTTTTAAC TCCCCTGCGT GGGATTGATT 32638 .......... .......... .......... .......... .......... .......... 601 TTATATGTGT ATTTGCACTA CATCCCCTTC CCAAGATATA TCCCGTTTAA TTTTGATTGT 32578 .......... .......... .......... .......... .......... .......... 601 GTAATGAACG CTATGACATC TAGTGAAATT TGTTTCGGGG ATACAATTAC TTATTTAAAT 32518 .......... .......... .......... .......... .......... .......... 601 GGCGCAATAC ATCCTTCAGA TCGCTAGGCC TACCCTTGGC ACAAAAGGGT CACATGCATG 32458 .......... .......... .......... .......... .......... .......... 601 TTTAGGACAC GATATATTTG TTTAAATGTT TATATGTTAT GTTGCTTTGA TTGAGGATAT 32398 .......... .......... .......... .......... .......... .......... 601 CGTAAACCCA CTCCTAGCCA AAATTCAAAA GAGTATACAG AAGCCAACAT TACAAATGTC 32338 .......... .......... .......... .......... .......... .......... 601 CGACCAAAAT TCCCGAGTCC CAAGTTTCTC ACACAAAATC CATACCATAA ATCCTAAATA 32278 .......... .......... .......... .......... .......... .......... 601 CCGCTCTATC ATCTCAGGAA AGTCGAATCA CC 32246 ||| || | ||| || .......... .......GAA AG-AGCTTCA CC 615 hqPGS_C08HBa0235H18.1-_SGN-U321902+ (36411 36387,36273 36256,35480 35476,34737 34280) ******************************************************************************** EST sequence 61 +strand 850 n (File: SGN-U344475+) 1 TTGACCCCCT TTGAANACCA TGCTGGAGCT CCACCGCGGT GGCGGCCGCT CTAGAACTAG 61 TGGATCCCCC GGGCTGCAGG AATTCGGCAC TAGCTCTCTC CTTTAGTTGC TCTTTCGTGT 121 TTTGTTTTGA ATGCCGTTAG CTTAGGATTA GAAAACTCCA AACCCCCTTT TGAACGCCTT 181 TCTATTTTAT CAAGTTAAAA CTAAATCTTA AAAACAATAA GTATTTCAAC TTGTGAATTT 241 GGCCAAGTAA TATTCTAATA AGTTCAAACT AATTTCAAGT TTGCAAATAA TAAATAAAAT 301 AGTCAAATAG GTTGATCGTC GGAGAACCGT ATTAAACGGA GTGTCTTAGG TGCCTTACAC 361 CTTCCTAAGA CACTAATAGG AATCCTGAAC CTTTATAAAA TGTTTCAAAA AAATTTTTCC 421 TGTTTAAGTT GTTTAGAAAC GAAGTTTTCT TGATTATTCT TAAAAAATTA AGTGGCGACT 481 CCCAAAAAGC GAAAATATCT TCAAAATAAA ACATAAGTCT TTTCGAAAAC ACCCTTTCTT 541 TCGATGAAAC CGATTTCATC TAGTGGTTGG TTTTAAAACT TTAAATATAT GAAACAATTT 601 GGCTTAATTA TGCGTTAAGA TTAAACACTT GTTGGGGCTT ATTTGACTAA AAACATTGGT 661 TTTCTTTTCA AAAACCTATT TGTGTTCCCT CTAAGAGGTT GACACCTTAC CTTTTTAAAT 721 ATGGAGAATT AATATTATTT TGGTTTAAGA AAACAATATA TTAACTACCC CTCACTTGGT 781 TGTTCGTATT TGATGACAAA ATTTGTTTTT TTTCGCAGGA CGGATTTTTT GTCCTCAAAA 841 ATATTACCAG Predicted gene structure (within gDNA segment 39741 to 30600): Exon 1 35480 35471 ( 10 n); cDNA 82 90 ( 9 n); score: 0.700 Intron 1 35470 35377 ( 94 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 35376 35259 ( 118 n); cDNA 91 211 ( 121 n); score: 0.716 Intron 2 35258 35158 ( 101 n); Pd: 0.000 (s: 0.59), Pa: 0.000 (s: 0.74) Exon 3 35157 34878 ( 280 n); cDNA 212 494 ( 283 n); score: 0.773 Intron 3 34877 31465 (3413 n); Pd: 0.000 (s: 0.85), Pa: 0.000 (s: 0) Exon 4 31464 31429 ( 36 n); cDNA 495 529 ( 35 n); score: 0.667 MATCH C08HBa0235H18.1- SGN-U344475+ 0.756 444 0.522 C PGS_C08HBa0235H18.1-_SGN-U344475+ (35480 35471,35376 35259,35157 34878,31464 31429) Alignment (genomic DNA sequence = upper lines): ATTAGGACAG GTACAGAAAT GGGCTAAAAA ACCCAAAGGC AGGTGGGTCC AACATTCGGT 35421 ||| || || ATTCGG-CAC .......... .......... .......... .......... .......... 90 CAAGGATAAC AGAACCCGGA GTTGGACCCA AATCTCTCTC TCTCTATCCT TCTCTTTACT 35361 || | |||| || | .......... .......... .......... .......... ....TAGCTC TCTCCTT--T 104 ATTTGCT-TA TCTTATTTTG TTTTCAATGC CGTTAGCTTA GGATTAGGAA ACTCCAAACC 35302 | ||||| | || | ||||| |||| ||||| |||||||||| ||||||| || |||||||||| AGTTGCTCTT TCGTGTTTTG TTTTGAATGC CGTTAGCTTA GGATTAGAAA ACTCCAAACC 164 CTC-ATCGAA CGCCTGT-TA TTTTATCAAA CCTAAA--AA ATTTTAAAAC TAACTTCTAA 35246 | | | ||| ||||| | || ||||||||| ||| || || |||| CCCTTTTGAA CGCCTTTCTA TTTTATCAAG TTAAAACTAA ATCTTAA... .......... 211 ATGATAAATT GTTTCAAATT CGTAAGGCTT GTTTAGATAA AACCTTGAGT AAGCTTAACT 35186 .......... .......... .......... .......... .......... .......... 211 TTGAAATGGT TTCGTAAACT GGCAAGATAA ACAATAAATA TTTCAAAATT GGCTAAGTTT 35126 || ||||||| || |||| || || | | | ||| .......... .......... ........AA ACAATAAGTA TTTC-AACTT -G-TGAATTT 240 GGCTAAGTAA GTCATGTTAA AAGTTCAAAT AAATTTGCAA AGGT-TAAA- AATAAA-AAT 35069 ||| |||||| | | | | ||||||||| ||||| ||| | ||| |||||| || GGCCAAGTAA -TATTCTAAT AAGTTCAAAC TAATTT-CAA GTTTGCAAAT AATAAATAAA 298 A-A-TCAAAT A-GTTAATCA TTGGAAAACC GTAAGTTAAC GGAGTGTTTT GGGTGCCTTA 35012 | | |||||| | ||| ||| | ||| |||| || | | ||| ||||||| || ||||||||| ATAGTCAAAT AGGTTGATCG TCGGAGAACC GT-ATTAAAC GGAGTGTCTT AGGTGCCTTA 357 CACCTTCCTA AGATACTAAT AGGAATCCCG AACC-CT-TA AAATGTTTCA AAACAATTTT 34954 |||||||||| ||| |||||| |||||||| | |||| | || |||||||||| ||| |||||| CACCTTCCTA AGACACTAAT AGGAATCCTG AACCTTTATA AAATGTTTCA AAAAAATTTT 417 TTCTGTTTAA GTTGTTTAGA AACGAAGTTT TCTTGATTTT TCTT-AAAAA TTAAGTGGCG 34895 | |||||||| |||||||||| |||||||||| |||||||| | |||| ||||| |||||||||| TCCTGTTTAA GTTGTTTAGA AACGAAGTTT TCTTGATTAT TCTTAAAAAA TTAAGTGGCG 477 ACTCCTAAAA GTCTAAAAAC AAACTCTTTT CGAAAATCAC CACCCTTTTT CGATAAAACA 34835 ||||| |||| | ||| ACTCCCAAAA AGCGAAA... .......... .......... .......... .......... 494 GAAATGGCGA CTCCACTGGG GACTTGGAGG ATTCTAACCT TAAGATTAAC GTATTTGATT 34775 .......... .......... .......... .......... .......... .......... 494 ATTTGTGATT AACTGTTTAA ATGTTTAAAT TGTTTAGATT TTTAAACTGC TGCATACATA 34715 .......... .......... .......... .......... .......... .......... 494 GCATACATAC TTCCGTCAAA CGACACTTTT TTACATTTCC ACTAAAGGAC GATTATGCGG 34655 .......... .......... .......... .......... .......... .......... 494 GTTCGCAGTC GTTCGTTAAC CAAAAATCTT CTCGGGGCAC CCTGACGAGT GTAGTTGATT 34595 .......... .......... .......... .......... .......... .......... 494 ACTTGATAGT CAACGATCGT TAATTGTTCC AGCCCAAGTA GTCCGCTTGG GTTACCCATT 34535 .......... .......... .......... .......... .......... .......... 494 CCACTCTAAA TACAACCCAC TCTTAGTCAA ACTAGGATAG AGCGAAACCA AATCCCGAAA 34475 .......... .......... .......... .......... .......... .......... 494 ATAGCGCATT GGCCTAAGAT GACCCGACAC CCAAGGAGTG TCGGGCCCAT TAGAAAAGTC 34415 .......... .......... .......... .......... .......... .......... 494 CACCTTGAGT CCAAAGAGCC TGCGGCTCGA TAGGACGCTC ATGTTTGTTG TTTAAATTTG 34355 .......... .......... .......... .......... .......... .......... 494 AAGGATGTAT TGCGTGTTTA ACGAGTTGTT GTATCGGGGG GATTGAAAAT TAACTAGTTG 34295 .......... .......... .......... .......... .......... .......... 494 TATGTTTTTG TAGATGTCAA GTCAGTTCCT TCACTTCAAA ATGGTCACCC AGGCACCCGA 34235 .......... .......... .......... .......... .......... .......... 494 CATTCTTCGA GTATGGTGGG AAAATCTTAA GGAGTGTCAG AAGAGAGAGA TCTCGATTTA 34175 .......... .......... .......... .......... .......... .......... 494 CTTGGGTCAC CTACCTTCGA TAATGGACTT CAAGGTATGG CCCACGTTTA TCGAAGTCAT 34115 .......... .......... .......... .......... .......... .......... 494 CACCCGATTC TGGGACGATA AGAAGATGGT CTTTCGATTT GGAGATGTCG AAATAAAACC 34055 .......... .......... .......... .......... .......... .......... 494 CACATTAGAA GAGATCAAAG ATTGCCTTGA CTCGATTGGG ACGTGTGGCA AAAGGAAAAA 33995 .......... .......... .......... .......... .......... .......... 494 GCGTCCCGAT CATCACATTC TCCTGCCAGA TAGGCCAACC GAGACTGAGC TAAGAGACAT 33935 .......... .......... .......... .......... .......... .......... 494 ATTATCCCTA GTGAATGCGA ATTGGCTAGA GACTCACAAC ATTCCACTGA TGAGGTTTTT 33875 .......... .......... .......... .......... .......... .......... 494 CGAGAGGTGG GGGCACGACA ATTATTTTAG ATTGTTCCCG GACGAATTCC ATGATCACAG 33815 .......... .......... .......... .......... .......... .......... 494 TACTTGGAGG CAAACTCAAG CTATCGCTTT CTCCGCATGC CTCTTGGGAA CTATGGTGTT 33755 .......... .......... .......... .......... .......... .......... 494 CCCTAAAGAC GAAGGAAAAG AGATCGACAC CCGGGTAATA ATGGTAGTGA ATGCCATGTT 33695 .......... .......... .......... .......... .......... .......... 494 CAGAGGAGTC GGTAGAAAAT CTGAAGAAAA GAAATATTGC TGTTTGGCCC CAGTCATCCT 33635 .......... .......... .......... .......... .......... .......... 494 GTCCGACATT TACCGATCTT TGAGCCTGTG CAAGAATGGT TTTCCGTTTT TCCAAGGTTG 33575 .......... .......... .......... .......... .......... .......... 494 CAACATCTTA CTTCAATGGT GGTTGACGGA GCATCTATGC AAAAGAGACA ACCCCCAGCT 33515 .......... .......... .......... .......... .......... .......... 494 ACATGGTTTG GCCGAACCAA GTCAAACAAG TCCTCTCAAT AATTACGAGT TCTACTTGAG 33455 .......... .......... .......... .......... .......... .......... 494 TATCCGTAAA TTTCCAATTC ACACCACCAG GGATGCGTGG GCAAAGGTGT TTTACAATTT 33395 .......... .......... .......... .......... .......... .......... 494 GAAAGAAGGA GACATACAAT GGGTATTACC GAGCTTCAGG TCTCAGATGA TAGCAGCCCA 33335 .......... .......... .......... .......... .......... .......... 494 AGGGGCCAAA TTGCCATTTT TAGTCCTTCC CGGCATCAGA GGATTGCGTC CTTACAACCC 33275 .......... .......... .......... .......... .......... .......... 494 GACACGAGTA ATGCGGCAAT TTGGGAAAGT CCAAATCATA CCCGCCCAAG GAGATGCCAG 33215 .......... .......... .......... .......... .......... .......... 494 CTCTTTCATT GTTGATTACA ACGGGAAGGA CAAAATACCT TTCGCTAAAA TTATCCTCCA 33155 .......... .......... .......... .......... .......... .......... 494 GGAATGGGCC GGACGTGTCA ACATGAAGTG GGAGGTCACC GAAGATAGGT ATGGAGCTGG 33095 .......... .......... .......... .......... .......... .......... 494 GTATGTCGAC GAATATAAGA CATGGTTGCA TAATAATTTG CATGGTGTAG TGGATCCGAC 33035 .......... .......... .......... .......... .......... .......... 494 ACCACGCACA AGTCGGAAAA TCGAAGACGT GGAGACAAGG CTTCAGATTC ACGCGTACCA 32975 .......... .......... .......... .......... .......... .......... 494 TTTTCAGCAA GAGTGGGACC GGAGGGAGCA GGAATTCTAT AAGAAAGAAC AGGAATTTCA 32915 .......... .......... .......... .......... .......... .......... 494 ACAAAGGGAG CAAGCGTACC AACTCCGGGA ATTAGAAAAT CAGAGAGTTT TAGCCGTAAT 32855 .......... .......... .......... .......... .......... .......... 494 GTCACAAGAA TTAGCTGACA CAAGGACTTG TCTAATGCGT TTGGACACTA TTTTGGACGA 32795 .......... .......... .......... .......... .......... .......... 494 GCAGATGAAC ACCTTACAAG CCGTACCAAC ATCTTCCAAA GCTGCGTTCG CGGAGCCATA 32735 .......... .......... .......... .......... .......... .......... 494 CGTGTTCACC AGCAAATGCA TTATCCGAGA AGAAGTGGAG AAGGCCAGAA GAGGAGCTGG 32675 .......... .......... .......... .......... .......... .......... 494 ATCATCGACC TTTTAACTCC CCTGCGTGGG ATTGATTTTA TATGTGTATT TGCACTACAT 32615 .......... .......... .......... .......... .......... .......... 494 CCCCTTCCCA AGATATATCC CGTTTAATTT TGATTGTGTA ATGAACGCTA TGACATCTAG 32555 .......... .......... .......... .......... .......... .......... 494 TGAAATTTGT TTCGGGGATA CAATTACTTA TTTAAATGGC GCAATACATC CTTCAGATCG 32495 .......... .......... .......... .......... .......... .......... 494 CTAGGCCTAC CCTTGGCACA AAAGGGTCAC ATGCATGTTT AGGACACGAT ATATTTGTTT 32435 .......... .......... .......... .......... .......... .......... 494 AAATGTTTAT ATGTTATGTT GCTTTGATTG AGGATATCGT AAACCCACTC CTAGCCAAAA 32375 .......... .......... .......... .......... .......... .......... 494 TTCAAAAGAG TATACAGAAG CCAACATTAC AAATGTCCGA CCAAAATTCC CGAGTCCCAA 32315 .......... .......... .......... .......... .......... .......... 494 GTTTCTCACA CAAAATCCAT ACCATAAATC CTAAATACCG CTCTATCATC TCAGGAAAGT 32255 .......... .......... .......... .......... .......... .......... 494 CGAATCACCG CTATGGACAA AGGCAAGAAC GTCCAGACGG AGCTCACTGA GGAGGAATTG 32195 .......... .......... .......... .......... .......... .......... 494 CAAAGAAAGA TCGAGCGAGT CACTCGAGAG ATTCAGAAGG TTAAGGAAGA AGGACTCAAA 32135 .......... .......... .......... .......... .......... .......... 494 GTAGACGCGA CCACGGCGAT CTACAAAGCT GCGGTCACAA CATTGGATGA AGATCTGGCG 32075 .......... .......... .......... .......... .......... .......... 494 TCACAGATAA AGAGAAAGAA GGAGGTTGAG ATGGAAACCG AAAGCCTAAG GAAAAGGTTG 32015 .......... .......... .......... .......... .......... .......... 494 AACTTGCTTC GTTTGGAGAT ACACGAAGGA AAGGCGAGAG AGGCGAAGAT AGATATCGAG 31955 .......... .......... .......... .......... .......... .......... 494 ACTGCTGTGT TGTTGGACAG AAGCACGGCG CTCGACGAGG AATTGGCAAC CCATAGCGAC 31895 .......... .......... .......... .......... .......... .......... 494 CCAAAGGGCG GAAAATACCT CGCCCGTGAT CAGGGAACAG GCAACAGTGG CCCCGGCCAT 31835 .......... .......... .......... .......... .......... .......... 494 GAAGTGATTG AGGAGGATGA TGAAGAAGAA ATCGTCTACA AGCCTCCATT TTCGACTGCA 31775 .......... .......... .......... .......... .......... .......... 494 TGAAAGGAAA GGAATGGCGC AGCCACAAGA CAAGAAATCT CCAAATGTGG TCTTCTAGAA 31715 .......... .......... .......... .......... .......... .......... 494 ATCTCAATGT TGTTTTTCAA TTCCCTTGTA ATCACAACGA AAGAATGAAT GGAAAATTTT 31655 .......... .......... .......... .......... .......... .......... 494 CATCCTAAAA TCCGAACTAC GTTGGGCCTG AATTCTCCCC GTGAGATACG TAGGCAGCCT 31595 .......... .......... .......... .......... .......... .......... 494 TCCCGGCCCG GCCCCTATCA CAGAAAATTT TCATTCTCCT CCATGTTTCG GAGATACGAA 31535 .......... .......... .......... .......... .......... .......... 494 GATAAGATCA ACAGACGTCG CAAAGCAGCT GCAAGAAGAC CATAGCTCAA CGTGATTCAG 31475 .......... .......... .......... .......... .......... .......... 494 ATTTCCCAAG ATATCTCCAA ACAAACAAAT TCCTGTTTGT TCAAAA 31429 |||||| ||| | || | || | ||| | |||| .......... ATATCTTCAA AATAAAACAT AAGTCTTT-T CGAAAA 529 hqPGS_C08HBa0235H18.1-_SGN-U344475+ (35376 35259,35157 34878) ******************************************************************************** EST sequence 78 +strand 798 n (File: SGN-U332003+) 1 TTTGTTGACG TTTTTGTTTT AAATGTCGTT AGCTTAGGAT TAGAAGAATC CAAACCCCAT 61 CAAACGCCTT TTGCTTTATC AAACTCGAAA CTAAAAAATC GAAACTTTAA AGGCGTTCGA 121 ATTTGAAAGT CACTTAGAAT TAAAGTTCGA AAAGTTTTAA TGTTAACGGA ATCTTAAAAC 181 AATAAATGTT TCAAATTTAT AAAGTTTTCC TAGATATCTT AAGAAGTTCA AAATTCGCAA 241 GTCTTTAAAA CAAAATAGTC AAATAAGTTA ATCGTCGGAA AACTGTATTT AACGGAGTGT 301 CTTAGGTGCC TTACACCTTC TTAAGATACT AATAGGAATC TTGAACCCTT AAAATGTTTC 361 AAAACAATTT TTCTGTTTAA GTTGTTTAGA AACGAAGTTT TCTTGATTTT TCTTAAAAAT 421 TAAGTGGCGA CTCCTAAAAG TCTAAAAACA AACTCTTTTC GAAAATCACC TTTTTCGATA 481 AAACAATAGG CAATGAGTTC TCTTCTATTT TATTTTAAAG TTTAAATTTA AGTTACTTAT 541 TTATATTTTA ATGTACGTTG AATTAATTAT TTATTTAGAG TTTAGTTACG TGATATACAT 601 AATTTGAGAT TTTGTTCTTT ATGATTAAAA AAAATTTTCA TCTAGAAGAA AGTCTTGTGC 661 TTCAATTTCT TTATACTGCA GTTTATAACT TGTTTTCAAT AGCTATTACA TTATCCATCG 721 ATTGTTACAT TATATTCCAA AGGACTTAGA TGATAAAAAC AATTGCATAT TGTGATTGTT 781 TGCAACAAAA AAAAAAAA Predicted gene structure (within gDNA segment 38660 to 30964): Exon 1 35354 34835 ( 520 n); cDNA 5 485 ( 481 n); score: 0.784 PPA cDNA 784 798 MATCH C08HBa0235H18.1- SGN-U332003+ 0.784 520 0.652 C PGS_C08HBa0235H18.1-_SGN-U332003+ (35354 34835) Alignment (genomic DNA sequence = upper lines): TTATCTTATT TTGTTTTCAA TGCCGTTAGC TTAGGATTAG GAAACTCCAA ACCCTCATCG 35295 || | | || ||||||| || || ||||||| |||||||||| | | ||||| |||| |||| TTGACGT-TT TTGTTTTAAA TGTCGTTAGC TTAGGATTAG AAGAATCCAA ACCC-CATCA 62 AACGCCTGTT ATTTTATCAA ACCTAAAAAA TTTTAAAACT AACTTCTAAA TGATAAATTG 35235 ||||||| || |||||||| | || ||| ||||| || || ||| |||| AACGCCTTTT GCTTTATCAA A-CT-CGAAA --CTAAAA-- AA--TCGAAA CTTTAAAGGC 114 TTTCAAATTC GTAAGGCTTG TTTAGATAAA ACCTTGAGTA AGCTTAACTT TGAAATGGTT 35175 ||| |||| | ||| | | |||| | | || | | | || || | | ||| | GTTCGAATTT GAAAGTC-AC T-TAGAATTA AAGTT-CG-A A----AAGTT TTA-ATGTTA 165 TCGTAAACTG GCAAGATAAA CAATAAATAT TTCAAAATTG GCTAAGTTTG GCTAAGTAAG 35115 || | | | | | ||| |||||||| | ||||| ||| |||||| || || | ACGGA-A-T- -C-TTA-AAA CAATAAATGT TTCAA-ATTT ATAAAGTTTT CCT-AG-ATA 216 TCATGTTAAA AGTTCAAATA AATTTGCAAA GGTTAAAAAT AAAAATAATC AAAT-AGTTA 35056 || | | | | ||||| | | |||| |||| || |||| |||||| || |||| ||||| TC-T-TAAGA AGTTC--A-A AATTCGCAAG TCTTTAAAA- CAAAATAGTC AAATAAGTTA 270 ATCATTGGAA AACCGTAAGT TAACGGAGTG TTTTGGGTGC CTTACACCTT CCTAAGATAC 34996 ||| | |||| ||| || | | |||||||||| | || ||||| |||||||||| | |||||||| ATCGTCGGAA AACTGT-ATT TAACGGAGTG TCTTAGGTGC CTTACACCTT CTTAAGATAC 329 TAATAGGAAT CCCGAACCCT TAAAATGTTT CAAAACAATT TTTTCTGTTT AAGTTGTTTA 34936 |||||||||| | ||||||| |||||||||| |||||||| | |||||||||| |||||||||| TAATAGGAAT CTTGAACCCT TAAAATGTTT CAAAACAA-T TTTTCTGTTT AAGTTGTTTA 388 GAAACGAAGT TTTCTTGATT TTTCTTAAAA ATTAAGTGGC GACTCCTAAA AGTCTAAAAA 34876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACGAAGT TTTCTTGATT TTTCTTAAAA ATTAAGTGGC GACTCCTAAA AGTCTAAAAA 448 CAAACTCTTT TCGAAAATCA CCACCCTTTT TCGATAAAAC A 34835 |||||||||| |||||||| || |||||| |||||||||| | CAAACTCTTT TCGAAAAT-- -CA-CCTTTT TCGATAAAAC A 485 hqPGS_C08HBa0235H18.1-_SGN-U332003+ (35354 34835) ******************************************************************************** EST sequence 66 +strand 647 n (File: SGN-U315283+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG TTATTGAATT GGTTTTTATA AAAAAAA Predicted gene structure (within gDNA segment 37181 to 31746): Exon 1 35475 35463 ( 13 n); cDNA 81 92 ( 12 n); score: 0.615 Intron 1 35462 35187 ( 276 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 35186 34835 ( 352 n); cDNA 93 439 ( 347 n); score: 0.786 MATCH C08HBa0235H18.1- SGN-U315283+ 0.786 365 0.564 C PGS_C08HBa0235H18.1-_SGN-U315283+ (35475 35463,35186 34835) Alignment (genomic DNA sequence = upper lines): GACAGGTACA GAAATGGGCT AAAAAACCCA AAGGCAGGTG GGTCCAACAT TCGGTCAAGG 35416 || || || | | GAGAGTTA-A GGC....... .......... .......... .......... .......... 92 ATAACAGAAC CCGGAGTTGG ACCCAAATCT CTCTCTCTCT ATCCTTCTCT TTACTATTTG 35356 .......... .......... .......... .......... .......... .......... 92 CTTATCTTAT TTTGTTTTCA ATGCCGTTAG CTTAGGATTA GGAAACTCCA AACCCTCATC 35296 .......... .......... .......... .......... .......... .......... 92 GAACGCCTGT TATTTTATCA AACCTAAAAA ATTTTAAAAC TAACTTCTAA ATGATAAATT 35236 .......... .......... .......... .......... .......... .......... 92 GTTTCAAATT CGTAAGGCTT GTTTAGATAA AACCTTGAGT AAGCTTAACT TTGAAATGGT 35176 | | |||| | | .......... .......... .......... .......... .........T TAGAAA-GTT 102 TTCGTAAACT GGCAAGATAA ACAATAAATA TTTCAAAATT GGCTAAGTTT GGCTAAGTAA 35116 | ||| || | ||| | || |||| | || ||||| || |||||| |||||||||| TAACTAAGAC GGAATCTTAA AAGATTAATA TCTC-AAATT TGCAAAGTTT GGCTAAGTAA 161 GTCATGTTAA AAGTTCAAAT AAATTTGCAA AGGTTAAAAA TAAAAATAAT CAAAT-AGTT 35057 || || ||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| |||| ATCGTGATAA AAGTTCAAAT AAATTTGCAA AGGGTAAAAA TAAAAATAAT CAAATAAGTT 221 AATCATTGGA AAACCGTAAG TTAACGGAGT GTTTTGGGTG CCTT--ACAC CTTCCTAAGA 34999 | || ||||| ||||||| | |||||||||| || || |||| |||| |||| |||||||||| AGTCGTTGGA AAACCGT-AT TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA 280 TACTAATAGG AATCCCGAAC CCT-TAAAAT -GTTTCAAAA CAATTTTTTC TGTTTAAGTT 34941 |||||| | ||||||||| ||| ||||| |||||||| | | ||||| ||||||| || CGCTAATAAG AATCCCGAAT CCTAAAAAAT ATTTTCAAAA CGA-CTTTTC TGTTTAAATT 339 GTTTAGAAAC GAAGTTTTCT TGATTTTTCT TAAAAATTAA GTGGCGACTC CTAAAAGTCT 34881 |||| || | |||||||| |||||||||| |||||||||| |||||||||| || |||||| GTTTTGAGAA TGAGTTTTCT TGATTTTTCT TAAAAATTAA GTGGCGACTC CT-AAAGTC- 397 AAAAACAAAC TCTTTTCGAA AATCACCACC CTTTTTCGAT AAAACA 34835 |||| | || | || | || || || | ||||||| ||| || GAAAA-ATAC T-TTAAAATA AAACA-AACT C-TTTTCGAA AAATCA 439 hqPGS_C08HBa0235H18.1-_SGN-U315283+ (35186 34835) ******************************************************************************** EST sequence 46 +strand 934 n (File: SGN-U333796+) 1 CCAGGTAGTC TACCGCGGTG GCGGACGCTC TAGAACTAGT GGATCCCCCG GGCTGCAGGA 61 ATTCGGCACG AGGGGTTATA TGCCCTAGTC CACTTAGGGT ACCCGGAGGA TGTAACAACC 121 CTTGTACCAC GTTCGGAGGA CAACAATATT GTTGTACTCA AGGCCCATGT GGTCCTACAA 181 AATTTTCGAG ATTTTTCAAA CAAAGGTGCC CTAATGCGTA TAGCTACCCT CAAGATGATC 241 CTACTAGCTT ATTCACTTGC CCTAGTGGTA GTACAAATTA TAGGGTTGTT TTTTGCCCAT 301 AATTGATGCC ACAATAAAGC ATATTTTGCT ACAAATTGAA TGGTATGAAA AAATTACCAA 361 AATAATAAGC ATCTTAAACG GTCTGCTTNN AAAAAAAAAA AAAAAAAGAA CAAAAAAAAA 421 AAAAAAAAAA AAAAAAAACC TCGAGGGGGG GCCCGGTACC CAATTCGCCC TATAGTGAGT 481 CGTATTACAA TTCACTGGCC GTCGTTTTAC AACGTCGTGA CTGGGAAAAC CCTGGCGTTA 541 CCCAACTTAA TCGCCTTGCA GCACATCCCC TTTTCGCCAG TTGGCGTAAT AGCCAAAGAG 601 GCCCGCACCG AATGCCCTTC CCAAAAAGTT TTCCAACCCT TAATGGGCGA ATGTGCAAAT 661 TTTTAAGCCT TTTATATATT TTGTTAAAAA TATCCGTTTA AAATTTTTTT TAAAAAACCC 721 TTATTTTTTT TACCCAAATG GGCCCAAAAT TGCGCAAATA CCTCTTATTA ATAAAAAAAA 781 TATACCCCAA AGGGGTTGGG TGTTTGTTCA CTTTTGGGAA CAAAAATCCC TTTTTAAAAA 841 ACGGGCCTTT CACTTAAAGG GGAAAAAAAC GTTTTTAGGG GAGTGGGCCC TTCTGAACCT 901 ACCCCTAATA TTTTTGGGGT CGGGGCCCAA AAAA Predicted gene structure (within gDNA segment 45656 to 36620): Exon 1 44541 44537 ( 5 n); cDNA 70 74 ( 5 n); score: 0.600 Intron 1 44536 41171 (3366 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 41170 40858 ( 313 n); cDNA 75 387 ( 313 n); score: 0.990 Intron 2 40857 38708 (2150 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 3 38707 38686 ( 22 n); cDNA 388 409 ( 22 n); score: 0.682 MATCH C08HBa0235H18.1- SGN-U333796+ 0.990 340 0.364 C PGS_C08HBa0235H18.1-_SGN-U333796+ (44541 44537,41170 40858,38707 38686) Alignment (genomic DNA sequence = upper lines): GACAGGTACA GAAATGGGCT AAAAAACCCA AAGGCAGGTG GGTCCAACAT TCGGTCAAGG 44482 || | GAGGG..... .......... .......... .......... .......... .......... 74 ATAACAGAAC CCGGAGTTGG ACCCAAATCT CTCTCTCTCT ATCCTTCTCT TTACTATTTG 44422 .......... .......... .......... .......... .......... .......... 74 CTTATCTTAT TTTGTTTTCA ATGCCGTAAG CTTAGGATTA GGAAACTCCA AACCCTCATC 44362 .......... .......... .......... .......... .......... .......... 74 GAACGCCTGT TATTTTATCA AACCTAAAAA TTTTTAAAAC TAACTTCTAA ATGATAAATT 44302 .......... .......... .......... .......... .......... .......... 74 GTTTCAAATT CGTAAGGCTT GTTTAGATAA AACCTTGAGT AAGCTTAACT TTGAAATGGT 44242 .......... .......... .......... .......... .......... .......... 74 TTCGTAAACT GGCAAGATAA ACAATAAATA TTTCAAAATT GGCTAAGTTT GGCTAAGTAA 44182 .......... .......... .......... .......... .......... .......... 74 GTCATGTTAA AAGTTCAAAT AAATTTGCAA AGGTTAAAAA TAAAAATAAT CAAATAGTTA 44122 .......... .......... .......... .......... .......... .......... 74 ATCATTGGAA AACCGTAAGT TAACGGAGTG TTTTGGGTGC CTTACACCTT CCTAAGATAC 44062 .......... .......... .......... .......... .......... .......... 74 TAATAGGAAT CCCGAACCCT TAAAATGTTT CAAAACAAAT AATAACAACA CAATTAAAAA 44002 .......... .......... .......... .......... .......... .......... 74 AAACGATAAA AGAATAACAA AATTAGTACA AAATAATTGG AAAAAAAAAA AGAAAAGAAG 43942 .......... .......... .......... .......... .......... .......... 74 AAGACAAAAC TATAAAATAA TAATATACTA AAAATAATGA TAAAATAAAA TAATAAAAAA 43882 .......... .......... .......... .......... .......... .......... 74 AAGAAGAAGA GAGAAACGTT CTTTCAGAGA AAAAAACAAA CAAACAAATA TATAAAATTT 43822 .......... .......... .......... .......... .......... .......... 74 AAAATAAACA AGAAACATGA AAAAAAAAAG ATTTTTCAAC GTCTCAATCA AGGCCAGACT 43762 .......... .......... .......... .......... .......... .......... 74 TGGACCATCA ATGCACTGAG GGGCACTAAG ATGGCACGTA TATGGGGTCG TACTAAATGC 43702 .......... .......... .......... .......... .......... .......... 74 AACTTTGACG GTGCTGGTAG AGGTTCTTGT GAGACTGGTG ATTGTGGTGG AGTCTTGCAG 43642 .......... .......... .......... .......... .......... .......... 74 TGTACCGGGT GGGGTAAACC GCCAAACACC TTGACCGAAT ACGCCTTGAA CCAGTTTAAC 43582 .......... .......... .......... .......... .......... .......... 74 AACCTAGATT TCTGGGACAT TTCTTTAGTC GATGGATTTA ATATACCGAT GACTTTCGCC 43522 .......... .......... .......... .......... .......... .......... 74 ACAACCAATT CCAGTGGAGG AAAATGCCAC TCAATTCAAT GCACCGCCAA TATAAACGGT 43462 .......... .......... .......... .......... .......... .......... 74 GAATGCCCTA GTCAACTTAA AGTAACCGGA GGATGTAACA ATCCTTGTAC CACGTTTGGA 43402 .......... .......... .......... .......... .......... .......... 74 GGACAACAAT ATTGTTGCAC CCAAGGTCCA TGTAGTCCTA CTGAGTGGTC GAAATTTTTC 43342 .......... .......... .......... .......... .......... .......... 74 AAACAGAGAT GCCCTGATGC CTATAGCTAC CCACAAGATG ATGCTACTAG CACATTTGCT 43282 .......... .......... .......... .......... .......... .......... 74 TGCCCTAGTG ATAGTACAAA TTATAAGGTT GTTTTTTGCC CATAATTAAT GCCACAATAT 43222 .......... .......... .......... .......... .......... .......... 74 AAAGCATATT TTGCTACAAA TTATATGGTA TGAAAAATTA CCAAAACAAT AAGTATCTTA 43162 .......... .......... .......... .......... .......... .......... 74 AAAGGTTTGT TAAACTATTT ATGTTGGGTG AGATAATAAT ATCTTATTTG TGTAATGTAT 43102 .......... .......... .......... .......... .......... .......... 74 ACACACTCCC TTCAACTTAT ATATTTTGAT CATTGATGAA CAAATAATAA TATCTTTAAT 43042 .......... .......... .......... .......... .......... .......... 74 AATCGTGTGT CGTTATTTAC TTTACTTCAA CATTTTCTTG CCTTTTTTTT TTGTTGTTGT 42982 .......... .......... .......... .......... .......... .......... 74 ATATTGAATT TGAAACTTAT TAATGAATTA CTTGTAGGTG TATTCGATAT GGTCTCAATG 42922 .......... .......... .......... .......... .......... .......... 74 TTTACTGGTT AGATTTTGTG GTTTAGTTTA TCGATTTTTT ATTTATAAAC ATGCTAAATC 42862 .......... .......... .......... .......... .......... .......... 74 AATGATCAAT AATTTAGATA ATCAACTATC GATCCTTAAA TACTTGATTT TTTATTTAAT 42802 .......... .......... .......... .......... .......... .......... 74 TATTCGTTAG ATACGTTTAA GTCAGAACTT CATAAATAGA AATCTAGAAA TTTACAAGCA 42742 .......... .......... .......... .......... .......... .......... 74 AAAACACTGC TTCATTTATT ATATTAATAT TAAAATAATA TAATAACACA ACTTTAACAA 42682 .......... .......... .......... .......... .......... .......... 74 GTGCACAAAA CACATCAGCA TCAATACATT GATTATAAAA TGCAAAAGAA AATAGGTTTT 42622 .......... .......... .......... .......... .......... .......... 74 GTATTTGAAG TTTAAATAAA GTCATTATTA TATAAATAGA AATAAAAATA AAAAAAAGTA 42562 .......... .......... .......... .......... .......... .......... 74 GTTTTAATAT AATTTTATTA GGTTATTGAT TTAATCATTA ACTAAAATTT TAAAATTGGA 42502 .......... .......... .......... .......... .......... .......... 74 AGCTGAACTA ATATTCTAAG ACGGTTAATT CAATAACCCA AAATTGATAA ATCAACACAG 42442 .......... .......... .......... .......... .......... .......... 74 TAGTAACATT TTTTTTTATT TAACCTTTAT CAGTTAAACC TGTTTTAGAC ACAACTAAAT 42382 .......... .......... .......... .......... .......... .......... 74 ATGAATTAGT TAATAAAATA AGTTAGGCGA AAAAAAAAGG AAATTTGACC CTTTTTCCTA 42322 .......... .......... .......... .......... .......... .......... 74 TCTTATTTTG ATTACCATTT GTTCTCGTAA GTCTTATTCT TGCATAAAAA AATCAAAAAT 42262 .......... .......... .......... .......... .......... .......... 74 TCTAAAAGTA TGGTGACAAC TCATCTTAAT TTTGAATAGA AGAAACTATT TAATTTTGAT 42202 .......... .......... .......... .......... .......... .......... 74 TTTTCTTTAT GGACGGTCTG AGAATTTTCC TATTATTTTT TAAAAAAATG AAATTTTAAT 42142 .......... .......... .......... .......... .......... .......... 74 ATAAAGCAGA CATATTAATA AAAATCTAGA CACATTAAAG TATTAGTTAA AAATAGGATA 42082 .......... .......... .......... .......... .......... .......... 74 TGAGGATTAT TTTTGTTGTG TTTAATTCCA AAAACTTTCT TGCCTACGAA CCAAAAAACA 42022 .......... .......... .......... .......... .......... .......... 74 TTCCCTGTTT TCTAAATTCA TTGGGAGAGT TTTATAATTA ATTAACTTTG AATCTCTAGA 41962 .......... .......... .......... .......... .......... .......... 74 AAATAAAGAA TTAATCATTT TTGCAGATTA GGAATTAGCT ATGAATTTTT TATTGTTGCT 41902 .......... .......... .......... .......... .......... .......... 74 AACAAATTAA AAGACAATTA TATAATATTG TCATTAATAT CACTTCATGT GATGACTTTC 41842 .......... .......... .......... .......... .......... .......... 74 TCTATTCCTC CTCCAATTTA AGTGGCTTGT AAATTTCTCC TTTAGAGGAA TTTTCCATAT 41782 .......... .......... .......... .......... .......... .......... 74 GATCATTCCA TCCATTTAAT TCTTTATGGT AAAAATTTCC ACAACTTATA TAGTGGAATT 41722 .......... .......... .......... .......... .......... .......... 74 CTAAATGTGC AAGGTGCCAA AAGTTGTCAC ACCCCTATAT AAACTACCCA ATAATATGTA 41662 .......... .......... .......... .......... .......... .......... 74 ACTATATATC AAAAATAAAC AAAAATATGT ACACAAACAT GGGCTACTTG ACATCTTCTT 41602 .......... .......... .......... .......... .......... .......... 74 TTATTTTCTT CTTCCTTGCT TTAGTGACTT ACACTTATGC TGCCACTATC GAGGTACGCA 41542 .......... .......... .......... .......... .......... .......... 74 ACAATTGTCC CTACACCGTT TGGGCAGCAT CGACCCCGAT AGGCGGTGGT CGACGTCTCG 41482 .......... .......... .......... .......... .......... .......... 74 ATCGAGGCCA AACATGGGTC ATCAATGCGC CGAGGGGCAC TAAGATGGCA CGTATATGGG 41422 .......... .......... .......... .......... .......... .......... 74 GTCGTACTAA TTGCAATTTT AATGGTGCTG GTAGAGGTTC ATGCCAAACT GGTGATTGTG 41362 .......... .......... .......... .......... .......... .......... 74 GTGGGGTCCT ACACTGTACC GGGTGGGGCA AACCCCCAAA CACCCTAGCT GAATATGCTT 41302 .......... .......... .......... .......... .......... .......... 74 TGGACCAATT CAGCAACCTA GATTTCTGGG ACATTTCTTT GGTTGACGGA TTTAATATAC 41242 .......... .......... .......... .......... .......... .......... 74 CGATGACTTT CGCCCCAACC AATCCTAGTG GAGGAAAATG CCATGCAATT CATTGCACGG 41182 .......... .......... .......... .......... .......... .......... 74 CTAATATAAA CGGTGAATGC CCTAGTCCAC TTAGGGTACC CGGAGGATGT AACAACCCTT 41122 | | |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTATATGC CCTAGTCCAC TTAGGGTACC CGGAGGATGT AACAACCCTT 123 GTACCACGTT CGGAGGACAA CAATATTGTT GTACTCAAGG CCCATGTGGT CCTACAAAAT 41062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCACGTT CGGAGGACAA CAATATTGTT GTACTCAAGG CCCATGTGGT CCTACAAAAT 183 TTTCGAGATT TTTCAAACAA AGGTGCCCTA ATGCGTATAG CTACCCTCAA GATGATCCTA 41002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGAGATT TTTCAAACAA AGGTGCCCTA ATGCGTATAG CTACCCTCAA GATGATCCTA 243 CTAGCTTATT CACTTGCCCT AGTGGTAGTA CAAATTATAG GGTTGTTTTT TGCCCATAAT 40942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGCTTATT CACTTGCCCT AGTGGTAGTA CAAATTATAG GGTTGTTTTT TGCCCATAAT 303 TGATGCCACA ATAAAGCATA TTTTGCTACA AATTGAATGG TATGAAAAAA TTACCAAAAT 40882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCCACA ATAAAGCATA TTTTGCTACA AATTGAATGG TATGAAAAAA TTACCAAAAT 363 AATAAGCATC TTAAACGGTC TGCTAAACTA TGTTGCCTTA ATGTGATAAT AATCTCCAAC 40822 |||||||||| |||||||||| |||| AATAAGCATC TTAAACGGTC TGCT...... .......... .......... .......... 387 GTGTGTTATG TATGTCTCCC TTCAACTGAA TATAGTTTTA TCATAATGAA TAAACAATAA 40762 .......... .......... .......... .......... .......... .......... 387 TATCGTTAGT ACTTTTACGT CCTGGTTAAA TCGAGGGGGC GGCTCAAGCG TATTACGTTC 40702 .......... .......... .......... .......... .......... .......... 387 TAAAGTAAAA ATTAAATGGG GTTTTAAACT TAAATTGTTA ATAATTTTTA TATAATTGAT 40642 .......... .......... .......... .......... .......... .......... 387 TTCGTCTAGT TTTCATGTGA TAGTATAATC ATTTCTTATT TTTAATTATT TTTCATGAGA 40582 .......... .......... .......... .......... .......... .......... 387 TATAGTATTC CAAATATGTC AAAATTCTTC TAATGATTTC TTCATTTTTC ATGAAATGTT 40522 .......... .......... .......... .......... .......... .......... 387 AAACTTTTTT TAAAAAATAA TAATTTACGA CTGTTATAAT TTAAATTTGA AGGCCTATGA 40462 .......... .......... .......... .......... .......... .......... 387 CACATGTCTT TTTTTAACAC TGTCGACCAT CCCTGAACAT GCCTAGTGCT AATAAATTGG 40402 .......... .......... .......... .......... .......... .......... 387 CAGGTTCATA ACTCGTATTG GATATTGTCC ATGTGGTTAT TGATTGGTTC AGTTAGGTTT 40342 .......... .......... .......... .......... .......... .......... 387 TTGTGTATTT TTTATTTATA ACACGCTAAA TCGATAGTCA AACTTAACCA ATGAACCAAC 40282 .......... .......... .......... .......... .......... .......... 387 AGTCCTGTTT TCTTAATTTC ATTAGCAGAG TTTTTTTAAT TAACTTTGAA TCTCCAGAAA 40222 .......... .......... .......... .......... .......... .......... 387 TTAAAGAAGT AATCATCATT GCAGTTTGGT AATTTAGATT AAATGACAGT ATGTAATATA 40162 .......... .......... .......... .......... .......... .......... 387 ATATAGCCAT AATTAATATC ATGATTTCAT GTGATGAATT TTCTCTATTG CTCCTTCAAT 40102 .......... .......... .......... .......... .......... .......... 387 ATGATGTCTT ACACTTATCA AATATATAAG TGGCTACCTA TTAAATTTCT CCCTTATAGA 40042 .......... .......... .......... .......... .......... .......... 387 AATTTTCCTT GTAATCATTC CATCCATTTA ATTCTGTATT GAAAGAGTTA CAAATTTTCA 39982 .......... .......... .......... .......... .......... .......... 387 CAATTTATGT AGTGGAAGTT TTAAGATGAT ATATTTTTTT AATTTTTTGA ATGTCTATTT 39922 .......... .......... .......... .......... .......... .......... 387 CATCGCTAGA TTCAACGTGT CAATAGAATT TAGCCCTATA TCGAATGGGC GTGCTCGTGG 39862 .......... .......... .......... .......... .......... .......... 387 CACTAGGTGT AGAGTTGATA TTAACATGAT TTGTCCATGA GTGCTAAAAA CTCGCAGAGG 39802 .......... .......... .......... .......... .......... .......... 387 ATGTTATAAC AATCCTTGTA CGATTTTTAA GACCGATCAA TATTGTTGTT ATTCCGGTAA 39742 .......... .......... .......... .......... .......... .......... 387 ATGTGATCCA ACAGTGTAAG TGTTTTTAAG GAAAGGTGTT ATGATGCTTA CCCTAAGGAT 39682 .......... .......... .......... .......... .......... .......... 387 GCTAAAACTA ATATTTTACT TGTCTTGGAG GAACTAATTA TAAAGTAGTT TTTTGCCCAT 39622 .......... .......... .......... .......... .......... .......... 387 AAAAAGAATA TTTTGGTTGC GAAAAAAATG AATGAAAAAT TACCAAAATA ATATTGATAA 39562 .......... .......... .......... .......... .......... .......... 387 TAAGTTTGTA TATATGCGTG TGGAATATAT ATACACAAAC CCTTTCAACT TAAAGTGAAA 39502 .......... .......... .......... .......... .......... .......... 387 ACATAGTTTG ATATGCTATA TATATACTAG TAAAACTATT CGTGCATTTA ATATTACAGA 39442 .......... .......... .......... .......... .......... .......... 387 TTTTGGATAA ATTTTAGAAA TCACAGAGTT TTAATGTGAA GTTACAATCT ATCCCTCTTT 39382 .......... .......... .......... .......... .......... .......... 387 AGTTTGTAAT TACATTAATC TCTTAAAAGT AACACAAATC GGATACATTA ATATGTAGCT 39322 .......... .......... .......... .......... .......... .......... 387 CAGATACATT AAAGAGTATC TCGGATACAT TATAACATAA ATCGGATACA TAACATGTAG 39262 .......... .......... .......... .......... .......... .......... 387 CTCGGATACA TAACATGTAG CTCGGGTACA TCATAACATA AATAGGATAC ATAATATGTA 39202 .......... .......... .......... .......... .......... .......... 387 GCTTGGATAC ATTACATACT AGTTTTTGGA TGCATTAATA TGCAGCGCGA ATACATTAAG 39142 .......... .......... .......... .......... .......... .......... 387 AACTAGCTCA GATACATTAT AAAATAAACC GAATACATAA TATGCAGCTC AAATATATTA 39082 .......... .......... .......... .......... .......... .......... 387 AATATTGATT TAGATACATT AATATGTAAC TCAGTTACAT TAAATAAATA AGGAATTTTA 39022 .......... .......... .......... .......... .......... .......... 387 GAGGTTTTTA GAAATAAAAG GGAATATTGA AAATAAGGGA AAAATAAGAC GTGTATTTCA 38962 .......... .......... .......... .......... .......... .......... 387 TTAATTTATA AAATAATACT AAAAATCTAT CGATCATTAA AACTAAAACA CTATATATAT 38902 .......... .......... .......... .......... .......... .......... 387 TATCTTACAT ACAAGATTAT GTAATAACAA ATATTAATAA TGTAAAGGAA AATGAAAATT 38842 .......... .......... .......... .......... .......... .......... 387 ATCAAATCTT ATCATTTATC CTTAATAACA TAAGCATAAA TTAGTGACTA TAAAATTACA 38782 .......... .......... .......... .......... .......... .......... 387 TACTAGGATC TGTTACATAA GAAATAGTTT CAGTGAGTCA CTCAACATGA GCAAAATACA 38722 .......... .......... .......... .......... .......... .......... 387 TAACTATTTA ATTGTGCAAA AAGAAGAAGA AGAGGA 38686 | ||| || || || | | | || .......... ....TNNAAA AAAAAAAAAA AAAAGA 409 hqPGS_C08HBa0235H18.1-_SGN-U333796+ (41170 40858) ******************************************************************************** EST sequence 58 +strand 1013 n (File: SGN-U314100+) 1 GGGCGATTGG CGGCCAATCG GCCGAATTGA TCAACAAACC AAATATTCTT CTTTTATTCT 61 AAAATGAGTC ATTTGACAAC TTGTTTAGTG TTCTTTCTCC TTGCCTTTGT GACTTACACT 121 TATGCTTCCG GTGTATTTGA GGTCCATAAC AACTGTCCAT ACACCGTATG GGCAGCGGCG 181 ACTCCCGTAG GAGGTGGCCG ACGTCTCGAG AGAGGTCAAA GTTGGTGGTT TTGGGCTCCA 241 CCGGGCACCA AAATGGCACG TATTTGGGGT CGTACTAATT GCAATTTTGA TGGTGCTGGT 301 AGAGGTTGGT GCCAGACCGG TGATTGTGGT GGAGTCTTGG AATGCAAAGG ATGGGGTAAA 361 CCACCAAACA CCTTAGCTGA ATACGCTTTG AATCAATTTA GCAACTTAGA TTTCTGGGAC 421 ATTTCTGTTA TTGATGGATT CAACATCCCT ATGTCTTTCG GCCCAACTAA CCCTGGGCCG 481 GGAAAATGTC ATCCAATTCA ATGTGTTGCT AATATAAACG GTGAATGCCC TGGTTCACTT 541 AGGGTACCCG GAGGATGTAA CAACCCTTGT ACTACATTCG GAGGACAACA ATATTGTTGC 601 ACTCAAGGTC CATGTGGTCC TACCGATTTG TCAAGATTTT TCAAACAAAG ATGTCCCGAT 661 GCCTATAGTT ATCCTCAAGA CGATCCAACA AGTACTTTTA CTTGTCAGAG TTGGACTACA 721 GACTACAAGG TTATGTTTTG TCCTTATGGC TCTACTCACA ATGAAACAAC AAATTTCCCA 781 TTGGAGATTC CTACAAATAC TCTTGAAGTG GCTTAATTAA GTAGAAATCT TGAGTTGAGC 841 CAATCTCTTT TTTGTTAAAT TTGTTTTGAA GATGGACATT GTCTTTAATT TGCCTTGTAC 901 ACATTTCTTT TACATTTGTT TGTTTGAAGT GGCTAAGATC TGAATAACAA TCTATGATCG 961 ATGCTTTGTC TTATATATGG TATTTTAATT TTAAATTGAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 47202 to 38662): Exon 1 44546 44537 ( 10 n); cDNA 64 72 ( 9 n); score: 0.600 Intron 1 44536 41615 (2922 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 41614 40927 ( 688 n); cDNA 73 761 ( 689 n); score: 0.784 PPA cDNA 999 1013 MATCH C08HBa0235H18.1- SGN-U314100+ 0.784 698 0.689 C PGS_C08HBa0235H18.1-_SGN-U314100+ (44546 44537,41614 40927) Alignment (genomic DNA sequence = upper lines): ATTAGGACAG GTACAGAAAT GGGCTAAAAA ACCCAAAGGC AGGTGGGTCC AACATTCGGT 44487 || || || ATGAGT-CAT .......... .......... .......... .......... .......... 72 CAAGGATAAC AGAACCCGGA GTTGGACCCA AATCTCTCTC TCTCTATCCT TCTCTTTACT 44427 .......... .......... .......... .......... .......... .......... 72 ATTTGCTTAT CTTATTTTGT TTTCAATGCC GTAAGCTTAG GATTAGGAAA CTCCAAACCC 44367 .......... .......... .......... .......... .......... .......... 72 TCATCGAACG CCTGTTATTT TATCAAACCT AAAAATTTTT AAAACTAACT TCTAAATGAT 44307 .......... .......... .......... .......... .......... .......... 72 AAATTGTTTC AAATTCGTAA GGCTTGTTTA GATAAAACCT TGAGTAAGCT TAACTTTGAA 44247 .......... .......... .......... .......... .......... .......... 72 ATGGTTTCGT AAACTGGCAA GATAAACAAT AAATATTTCA AAATTGGCTA AGTTTGGCTA 44187 .......... .......... .......... .......... .......... .......... 72 AGTAAGTCAT GTTAAAAGTT CAAATAAATT TGCAAAGGTT AAAAATAAAA ATAATCAAAT 44127 .......... .......... .......... .......... .......... .......... 72 AGTTAATCAT TGGAAAACCG TAAGTTAACG GAGTGTTTTG GGTGCCTTAC ACCTTCCTAA 44067 .......... .......... .......... .......... .......... .......... 72 GATACTAATA GGAATCCCGA ACCCTTAAAA TGTTTCAAAA CAAATAATAA CAACACAATT 44007 .......... .......... .......... .......... .......... .......... 72 AAAAAAAACG ATAAAAGAAT AACAAAATTA GTACAAAATA ATTGGAAAAA AAAAAAGAAA 43947 .......... .......... .......... .......... .......... .......... 72 AGAAGAAGAC AAAACTATAA AATAATAATA TACTAAAAAT AATGATAAAA TAAAATAATA 43887 .......... .......... .......... .......... .......... .......... 72 AAAAAAAGAA GAAGAGAGAA ACGTTCTTTC AGAGAAAAAA ACAAACAAAC AAATATATAA 43827 .......... .......... .......... .......... .......... .......... 72 AATTTAAAAT AAACAAGAAA CATGAAAAAA AAAAGATTTT TCAACGTCTC AATCAAGGCC 43767 .......... .......... .......... .......... .......... .......... 72 AGACTTGGAC CATCAATGCA CTGAGGGGCA CTAAGATGGC ACGTATATGG GGTCGTACTA 43707 .......... .......... .......... .......... .......... .......... 72 AATGCAACTT TGACGGTGCT GGTAGAGGTT CTTGTGAGAC TGGTGATTGT GGTGGAGTCT 43647 .......... .......... .......... .......... .......... .......... 72 TGCAGTGTAC CGGGTGGGGT AAACCGCCAA ACACCTTGAC CGAATACGCC TTGAACCAGT 43587 .......... .......... .......... .......... .......... .......... 72 TTAACAACCT AGATTTCTGG GACATTTCTT TAGTCGATGG ATTTAATATA CCGATGACTT 43527 .......... .......... .......... .......... .......... .......... 72 TCGCCACAAC CAATTCCAGT GGAGGAAAAT GCCACTCAAT TCAATGCACC GCCAATATAA 43467 .......... .......... .......... .......... .......... .......... 72 ACGGTGAATG CCCTAGTCAA CTTAAAGTAA CCGGAGGATG TAACAATCCT TGTACCACGT 43407 .......... .......... .......... .......... .......... .......... 72 TTGGAGGACA ACAATATTGT TGCACCCAAG GTCCATGTAG TCCTACTGAG TGGTCGAAAT 43347 .......... .......... .......... .......... .......... .......... 72 TTTTCAAACA GAGATGCCCT GATGCCTATA GCTACCCACA AGATGATGCT ACTAGCACAT 43287 .......... .......... .......... .......... .......... .......... 72 TTGCTTGCCC TAGTGATAGT ACAAATTATA AGGTTGTTTT TTGCCCATAA TTAATGCCAC 43227 .......... .......... .......... .......... .......... .......... 72 AATATAAAGC ATATTTTGCT ACAAATTATA TGGTATGAAA AATTACCAAA ACAATAAGTA 43167 .......... .......... .......... .......... .......... .......... 72 TCTTAAAAGG TTTGTTAAAC TATTTATGTT GGGTGAGATA ATAATATCTT ATTTGTGTAA 43107 .......... .......... .......... .......... .......... .......... 72 TGTATACACA CTCCCTTCAA CTTATATATT TTGATCATTG ATGAACAAAT AATAATATCT 43047 .......... .......... .......... .......... .......... .......... 72 TTAATAATCG TGTGTCGTTA TTTACTTTAC TTCAACATTT TCTTGCCTTT TTTTTTTGTT 42987 .......... .......... .......... .......... .......... .......... 72 GTTGTATATT GAATTTGAAA CTTATTAATG AATTACTTGT AGGTGTATTC GATATGGTCT 42927 .......... .......... .......... .......... .......... .......... 72 CAATGTTTAC TGGTTAGATT TTGTGGTTTA GTTTATCGAT TTTTTATTTA TAAACATGCT 42867 .......... .......... .......... .......... .......... .......... 72 AAATCAATGA TCAATAATTT AGATAATCAA CTATCGATCC TTAAATACTT GATTTTTTAT 42807 .......... .......... .......... .......... .......... .......... 72 TTAATTATTC GTTAGATACG TTTAAGTCAG AACTTCATAA ATAGAAATCT AGAAATTTAC 42747 .......... .......... .......... .......... .......... .......... 72 AAGCAAAAAC ACTGCTTCAT TTATTATATT AATATTAAAA TAATATAATA ACACAACTTT 42687 .......... .......... .......... .......... .......... .......... 72 AACAAGTGCA CAAAACACAT CAGCATCAAT ACATTGATTA TAAAATGCAA AAGAAAATAG 42627 .......... .......... .......... .......... .......... .......... 72 GTTTTGTATT TGAAGTTTAA ATAAAGTCAT TATTATATAA ATAGAAATAA AAATAAAAAA 42567 .......... .......... .......... .......... .......... .......... 72 AAGTAGTTTT AATATAATTT TATTAGGTTA TTGATTTAAT CATTAACTAA AATTTTAAAA 42507 .......... .......... .......... .......... .......... .......... 72 TTGGAAGCTG AACTAATATT CTAAGACGGT TAATTCAATA ACCCAAAATT GATAAATCAA 42447 .......... .......... .......... .......... .......... .......... 72 CACAGTAGTA ACATTTTTTT TTATTTAACC TTTATCAGTT AAACCTGTTT TAGACACAAC 42387 .......... .......... .......... .......... .......... .......... 72 TAAATATGAA TTAGTTAATA AAATAAGTTA GGCGAAAAAA AAAGGAAATT TGACCCTTTT 42327 .......... .......... .......... .......... .......... .......... 72 TCCTATCTTA TTTTGATTAC CATTTGTTCT CGTAAGTCTT ATTCTTGCAT AAAAAAATCA 42267 .......... .......... .......... .......... .......... .......... 72 AAAATTCTAA AAGTATGGTG ACAACTCATC TTAATTTTGA ATAGAAGAAA CTATTTAATT 42207 .......... .......... .......... .......... .......... .......... 72 TTGATTTTTC TTTATGGACG GTCTGAGAAT TTTCCTATTA TTTTTTAAAA AAATGAAATT 42147 .......... .......... .......... .......... .......... .......... 72 TTAATATAAA GCAGACATAT TAATAAAAAT CTAGACACAT TAAAGTATTA GTTAAAAATA 42087 .......... .......... .......... .......... .......... .......... 72 GGATATGAGG ATTATTTTTG TTGTGTTTAA TTCCAAAAAC TTTCTTGCCT ACGAACCAAA 42027 .......... .......... .......... .......... .......... .......... 72 AAACATTCCC TGTTTTCTAA ATTCATTGGG AGAGTTTTAT AATTAATTAA CTTTGAATCT 41967 .......... .......... .......... .......... .......... .......... 72 CTAGAAAATA AAGAATTAAT CATTTTTGCA GATTAGGAAT TAGCTATGAA TTTTTTATTG 41907 .......... .......... .......... .......... .......... .......... 72 TTGCTAACAA ATTAAAAGAC AATTATATAA TATTGTCATT AATATCACTT CATGTGATGA 41847 .......... .......... .......... .......... .......... .......... 72 CTTTCTCTAT TCCTCCTCCA ATTTAAGTGG CTTGTAAATT TCTCCTTTAG AGGAATTTTC 41787 .......... .......... .......... .......... .......... .......... 72 CATATGATCA TTCCATCCAT TTAATTCTTT ATGGTAAAAA TTTCCACAAC TTATATAGTG 41727 .......... .......... .......... .......... .......... .......... 72 GAATTCTAAA TGTGCAAGGT GCCAAAAGTT GTCACACCCC TATATAAACT ACCCAATAAT 41667 .......... .......... .......... .......... .......... .......... 72 ATGTAACTAT ATATCAAAAA TAAACAAAAA TATGTACACA AACATGGGCT ACTTGACATC 41607 |||||| | .......... .......... .......... .......... .......... ..TTGACAAC 80 TTCTTTTATT TTCTTCTTCC TTGCTTTAGT GACTTACACT TATGCTGCC- -ACTA-TCGA 41550 || ||| | ||||| ||| |||| || || |||||||||| |||||| || || | || TTGTTTAGTG TTCTTTCTCC TTGCCTTTGT GACTTACACT TATGCTTCCG GTGTATTTGA 140 GGTACGCAAC AATTGTCCCT ACACCGTTTG GGCAGCATCG ACCCCGATAG GCGGTGGTCG 41490 ||| | ||| || ||||| | ||||||| || |||||| || || || ||| | ||||| || GGTCCATAAC AACTGTCCAT ACACCGTATG GGCAGCGGCG ACTCCCGTAG GAGGTGGCCG 200 ACGTCTCGAT CGAGGCCAAA CATGGGTCAT CAATGCGCCG AGGGGCACTA AGATGGCACG 41430 ||||||||| |||| |||| ||| | || || |||||| | | |||||||| ACGTCTCGAG AGAGGTCAAA GTTGGTGGTT TTGGGCTCCA CCGGGCACCA AAATGGCACG 260 TATATGGGGT CGTACTAATT GCAATTTTAA TGGTGCTGGT AGAGGTTCAT GCCAAACTGG 41370 ||| |||||| |||||||||| |||||||| | |||||||||| ||||||| | |||| || || TATTTGGGGT CGTACTAATT GCAATTTTGA TGGTGCTGGT AGAGGTTGGT GCCAGACCGG 320 TGATTGTGGT GGGGTCCTAC ACTGTACCGG GTGGGGCAAA CCCCCAAACA CCCTAGCTGA 41310 |||||||||| || ||| | | || | || ||||| ||| || ||||||| || ||||||| TGATTGTGGT GGAGTCTTGG AATGCAAAGG ATGGGGTAAA CCACCAAACA CCTTAGCTGA 380 ATATGCTTTG GACCAATTCA GCAACCTAGA TTTCTGGGAC ATTTCTTTGG TTGACGGATT 41250 ||| |||||| | ||||| | ||||| |||| |||||||||| |||||| | |||| ||||| ATACGCTTTG AATCAATTTA GCAACTTAGA TTTCTGGGAC ATTTCTGTTA TTGATGGATT 440 TAATATACCG ATGACTTTCG CCCCAACCAA TCCTAGTGGA GGAAAATGCC ATGCAATTCA 41190 || || || ||| |||||| |||||| || ||| | |||||||| | || ||||||| CAACATCCCT ATGTCTTTCG GCCCAACTAA CCCTGGGCCG GGAAAATGTC ATCCAATTCA 500 TTGCACGGCT AATATAAACG GTGAATGCCC TAGTCCACTT AGGGTACCCG GAGGATGTAA 41130 || ||| |||||||||| |||||||||| | || ||||| |||||||||| |||||||||| ATGTGTTGCT AATATAAACG GTGAATGCCC TGGTTCACTT AGGGTACCCG GAGGATGTAA 560 CAACCCTTGT ACCACGTTCG GAGGACAACA ATATTGTTGT ACTCAAGGCC CATGTGGTCC 41070 |||||||||| || || |||| |||||||||| ||||||||| |||||||| | |||||||||| CAACCCTTGT ACTACATTCG GAGGACAACA ATATTGTTGC ACTCAAGGTC CATGTGGTCC 620 TACAAAATTT TCGAGATTTT TCAAACAAAG GTGCCCTAAT GCGTATAGCT ACCCTCAAGA 41010 ||| | || || ||||||| |||||||||| || || || || ||||| | | |||||||| TACCGATTTG TCAAGATTTT TCAAACAAAG ATGTCCCGAT GCCTATAGTT ATCCTCAAGA 680 TGATCCTACT AGCTTATTCA CTTGCCCTAG TGGTAGTACA AATTATAGGG TTGTTTTTTG 40950 ||||| || || || | |||| | || | | | |||| | || | || || | ||||| CGATCCAACA AGTACTTTTA CTTGTCAGAG TTGGACTACA GACTACAAGG TTATGTTTTG 740 CCCATAATTG ATGCCACAAT AAA 40927 || | || | | | || || TCC-TTATGG CT-CTACTCA CAA 761 hqPGS_C08HBa0235H18.1-_SGN-U314100+ (41614 40927) ******************************************************************************** EST sequence 53 +strand 892 n (File: SGN-U333798+) 1 AAAGCTGGAG CTCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GCTCCGATAG GCGGTGGTCG ACGTCTCAAT CGAGGCCAAA CATGGGTCAT CAATGCTCCG 121 AGGGGAACTA AGATGGCACG TATATGGGGT CGTACTGGTT GCAACTTTAA TGCTGCAGGC 181 AGAGGTACAT GTCAGACTGG TGATTGTGGT GGAGTCTTAC AGTGTACCGG ATGGGGCAAA 241 CCCCCAAACA CCCTAGCCGA GTACGCCTTG GACCAGTTTA GCAACTTAGA TTTTTGGGAC 301 ATTTCTTTAG TCGATGGATT TAATATTCCA ATGACTTTTG CCCCAACAAA ACCTAGTGGA 361 GGAAAATGTC ACGCAATTCA TTGCACGGCC AATATAAATG GTGAATGTCC TCGCGCCCTT 421 AAGGTACCTG GAGGATGTAA CAACCCTTGT ACCACGTTTG GAGGACAACA ATATTGTTGC 481 ACCCAAGGTC CATGTGGCCC TACAGAGTTG TCCAAATTTT TCAAGAAAAG ATGTCCCGAT 541 GCTTATAGCT ACCCACAAGA CGATCCTACA AGCACATTTA CTTGCCCCTG GTGGTAGTAC 601 AAACTATAGG GTTGTCTTTT GTCCTAATGG GTGTGCTGAT CCCNAATTCC CCTTGAGATG 661 CCTGCAAGTA CTGATGAAGT GGCCAAGTGA AATTGNNAGT TCTCATTTTA ATCGCCTCAT 721 TAGTCAACTG ATCTCTACCG TAATGAAAAT CTTTATAGCT CAGTTTTTTA AAAAAAAAAA 781 AAAAAAAAAA CTCGAGGGGG GGCCGGTACC CATTTCGCCT ATAGTGAGTC GTATTACATC 841 ACTGGGCGTC GTTTAACACG TCGTGACTGG GAAACCCTGN CGTACCAACT AT Predicted gene structure (within gDNA segment 45597 to 38789): Exon 1 44541 44537 ( 5 n); cDNA 66 70 ( 5 n); score: 0.800 Intron 1 44536 41500 (3037 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 41499 40930 ( 570 n); cDNA 71 640 ( 570 n); score: 0.859 MATCH C08HBa0235H18.1- SGN-U333798+ 0.859 575 0.645 C PGS_C08HBa0235H18.1-_SGN-U333798+ (44541 44537,41499 40930) Alignment (genomic DNA sequence = upper lines): GACAGGTACA GAAATGGGCT AAAAAACCCA AAGGCAGGTG GGTCCAACAT TCGGTCAAGG 44482 || || GATAG..... .......... .......... .......... .......... .......... 70 ATAACAGAAC CCGGAGTTGG ACCCAAATCT CTCTCTCTCT ATCCTTCTCT TTACTATTTG 44422 .......... .......... .......... .......... .......... .......... 70 CTTATCTTAT TTTGTTTTCA ATGCCGTAAG CTTAGGATTA GGAAACTCCA AACCCTCATC 44362 .......... .......... .......... .......... .......... .......... 70 GAACGCCTGT TATTTTATCA AACCTAAAAA TTTTTAAAAC TAACTTCTAA ATGATAAATT 44302 .......... .......... .......... .......... .......... .......... 70 GTTTCAAATT CGTAAGGCTT GTTTAGATAA AACCTTGAGT AAGCTTAACT TTGAAATGGT 44242 .......... .......... .......... .......... .......... .......... 70 TTCGTAAACT GGCAAGATAA ACAATAAATA TTTCAAAATT GGCTAAGTTT GGCTAAGTAA 44182 .......... .......... .......... .......... .......... .......... 70 GTCATGTTAA AAGTTCAAAT AAATTTGCAA AGGTTAAAAA TAAAAATAAT CAAATAGTTA 44122 .......... .......... .......... .......... .......... .......... 70 ATCATTGGAA AACCGTAAGT TAACGGAGTG TTTTGGGTGC CTTACACCTT CCTAAGATAC 44062 .......... .......... .......... .......... .......... .......... 70 TAATAGGAAT CCCGAACCCT TAAAATGTTT CAAAACAAAT AATAACAACA CAATTAAAAA 44002 .......... .......... .......... .......... .......... .......... 70 AAACGATAAA AGAATAACAA AATTAGTACA AAATAATTGG AAAAAAAAAA AGAAAAGAAG 43942 .......... .......... .......... .......... .......... .......... 70 AAGACAAAAC TATAAAATAA TAATATACTA AAAATAATGA TAAAATAAAA TAATAAAAAA 43882 .......... .......... .......... .......... .......... .......... 70 AAGAAGAAGA GAGAAACGTT CTTTCAGAGA AAAAAACAAA CAAACAAATA TATAAAATTT 43822 .......... .......... .......... .......... .......... .......... 70 AAAATAAACA AGAAACATGA AAAAAAAAAG ATTTTTCAAC GTCTCAATCA AGGCCAGACT 43762 .......... .......... .......... .......... .......... .......... 70 TGGACCATCA ATGCACTGAG GGGCACTAAG ATGGCACGTA TATGGGGTCG TACTAAATGC 43702 .......... .......... .......... .......... .......... .......... 70 AACTTTGACG GTGCTGGTAG AGGTTCTTGT GAGACTGGTG ATTGTGGTGG AGTCTTGCAG 43642 .......... .......... .......... .......... .......... .......... 70 TGTACCGGGT GGGGTAAACC GCCAAACACC TTGACCGAAT ACGCCTTGAA CCAGTTTAAC 43582 .......... .......... .......... .......... .......... .......... 70 AACCTAGATT TCTGGGACAT TTCTTTAGTC GATGGATTTA ATATACCGAT GACTTTCGCC 43522 .......... .......... .......... .......... .......... .......... 70 ACAACCAATT CCAGTGGAGG AAAATGCCAC TCAATTCAAT GCACCGCCAA TATAAACGGT 43462 .......... .......... .......... .......... .......... .......... 70 GAATGCCCTA GTCAACTTAA AGTAACCGGA GGATGTAACA ATCCTTGTAC CACGTTTGGA 43402 .......... .......... .......... .......... .......... .......... 70 GGACAACAAT ATTGTTGCAC CCAAGGTCCA TGTAGTCCTA CTGAGTGGTC GAAATTTTTC 43342 .......... .......... .......... .......... .......... .......... 70 AAACAGAGAT GCCCTGATGC CTATAGCTAC CCACAAGATG ATGCTACTAG CACATTTGCT 43282 .......... .......... .......... .......... .......... .......... 70 TGCCCTAGTG ATAGTACAAA TTATAAGGTT GTTTTTTGCC CATAATTAAT GCCACAATAT 43222 .......... .......... .......... .......... .......... .......... 70 AAAGCATATT TTGCTACAAA TTATATGGTA TGAAAAATTA CCAAAACAAT AAGTATCTTA 43162 .......... .......... .......... .......... .......... .......... 70 AAAGGTTTGT TAAACTATTT ATGTTGGGTG AGATAATAAT ATCTTATTTG TGTAATGTAT 43102 .......... .......... .......... .......... .......... .......... 70 ACACACTCCC TTCAACTTAT ATATTTTGAT CATTGATGAA CAAATAATAA TATCTTTAAT 43042 .......... .......... .......... .......... .......... .......... 70 AATCGTGTGT CGTTATTTAC TTTACTTCAA CATTTTCTTG CCTTTTTTTT TTGTTGTTGT 42982 .......... .......... .......... .......... .......... .......... 70 ATATTGAATT TGAAACTTAT TAATGAATTA CTTGTAGGTG TATTCGATAT GGTCTCAATG 42922 .......... .......... .......... .......... .......... .......... 70 TTTACTGGTT AGATTTTGTG GTTTAGTTTA TCGATTTTTT ATTTATAAAC ATGCTAAATC 42862 .......... .......... .......... .......... .......... .......... 70 AATGATCAAT AATTTAGATA ATCAACTATC GATCCTTAAA TACTTGATTT TTTATTTAAT 42802 .......... .......... .......... .......... .......... .......... 70 TATTCGTTAG ATACGTTTAA GTCAGAACTT CATAAATAGA AATCTAGAAA TTTACAAGCA 42742 .......... .......... .......... .......... .......... .......... 70 AAAACACTGC TTCATTTATT ATATTAATAT TAAAATAATA TAATAACACA ACTTTAACAA 42682 .......... .......... .......... .......... .......... .......... 70 GTGCACAAAA CACATCAGCA TCAATACATT GATTATAAAA TGCAAAAGAA AATAGGTTTT 42622 .......... .......... .......... .......... .......... .......... 70 GTATTTGAAG TTTAAATAAA GTCATTATTA TATAAATAGA AATAAAAATA AAAAAAAGTA 42562 .......... .......... .......... .......... .......... .......... 70 GTTTTAATAT AATTTTATTA GGTTATTGAT TTAATCATTA ACTAAAATTT TAAAATTGGA 42502 .......... .......... .......... .......... .......... .......... 70 AGCTGAACTA ATATTCTAAG ACGGTTAATT CAATAACCCA AAATTGATAA ATCAACACAG 42442 .......... .......... .......... .......... .......... .......... 70 TAGTAACATT TTTTTTTATT TAACCTTTAT CAGTTAAACC TGTTTTAGAC ACAACTAAAT 42382 .......... .......... .......... .......... .......... .......... 70 ATGAATTAGT TAATAAAATA AGTTAGGCGA AAAAAAAAGG AAATTTGACC CTTTTTCCTA 42322 .......... .......... .......... .......... .......... .......... 70 TCTTATTTTG ATTACCATTT GTTCTCGTAA GTCTTATTCT TGCATAAAAA AATCAAAAAT 42262 .......... .......... .......... .......... .......... .......... 70 TCTAAAAGTA TGGTGACAAC TCATCTTAAT TTTGAATAGA AGAAACTATT TAATTTTGAT 42202 .......... .......... .......... .......... .......... .......... 70 TTTTCTTTAT GGACGGTCTG AGAATTTTCC TATTATTTTT TAAAAAAATG AAATTTTAAT 42142 .......... .......... .......... .......... .......... .......... 70 ATAAAGCAGA CATATTAATA AAAATCTAGA CACATTAAAG TATTAGTTAA AAATAGGATA 42082 .......... .......... .......... .......... .......... .......... 70 TGAGGATTAT TTTTGTTGTG TTTAATTCCA AAAACTTTCT TGCCTACGAA CCAAAAAACA 42022 .......... .......... .......... .......... .......... .......... 70 TTCCCTGTTT TCTAAATTCA TTGGGAGAGT TTTATAATTA ATTAACTTTG AATCTCTAGA 41962 .......... .......... .......... .......... .......... .......... 70 AAATAAAGAA TTAATCATTT TTGCAGATTA GGAATTAGCT ATGAATTTTT TATTGTTGCT 41902 .......... .......... .......... .......... .......... .......... 70 AACAAATTAA AAGACAATTA TATAATATTG TCATTAATAT CACTTCATGT GATGACTTTC 41842 .......... .......... .......... .......... .......... .......... 70 TCTATTCCTC CTCCAATTTA AGTGGCTTGT AAATTTCTCC TTTAGAGGAA TTTTCCATAT 41782 .......... .......... .......... .......... .......... .......... 70 GATCATTCCA TCCATTTAAT TCTTTATGGT AAAAATTTCC ACAACTTATA TAGTGGAATT 41722 .......... .......... .......... .......... .......... .......... 70 CTAAATGTGC AAGGTGCCAA AAGTTGTCAC ACCCCTATAT AAACTACCCA ATAATATGTA 41662 .......... .......... .......... .......... .......... .......... 70 ACTATATATC AAAAATAAAC AAAAATATGT ACACAAACAT GGGCTACTTG ACATCTTCTT 41602 .......... .......... .......... .......... .......... .......... 70 TTATTTTCTT CTTCCTTGCT TTAGTGACTT ACACTTATGC TGCCACTATC GAGGTACGCA 41542 .......... .......... .......... .......... .......... .......... 70 ACAATTGTCC CTACACCGTT TGGGCAGCAT CGACCCCGAT AGGCGGTGGT CGACGTCTCG 41482 |||||||| ||||||||| .......... .......... .......... .......... ..GCGGTGGT CGACGTCTCA 88 ATCGAGGCCA AACATGGGTC ATCAATGCGC CGAGGGGCAC TAAGATGGCA CGTATATGGG 41422 |||||||||| |||||||||| |||||||| | ||||||| || |||||||||| |||||||||| ATCGAGGCCA AACATGGGTC ATCAATGCTC CGAGGGGAAC TAAGATGGCA CGTATATGGG 148 GTCGTACTAA TTGCAATTTT AATGGTGCTG GTAGAGGTTC ATGCCAAACT GGTGATTGTG 41362 |||||||| |||||| ||| |||| ||| | | |||||| | ||| || ||| |||||||||| GTCGTACTGG TTGCAACTTT AATGCTGCAG GCAGAGGTAC ATGTCAGACT GGTGATTGTG 208 GTGGGGTCCT ACACTGTACC GGGTGGGGCA AACCCCCAAA CACCCTAGCT GAATATGCTT 41302 |||| ||| | ||| |||||| || ||||||| |||||||||| ||||||||| || || || | GTGGAGTCTT ACAGTGTACC GGATGGGGCA AACCCCCAAA CACCCTAGCC GAGTACGCCT 268 TGGACCAATT CAGCAACCTA GATTTCTGGG ACATTTCTTT GGTTGACGGA TTTAATATAC 41242 ||||||| || |||||| || ||||| |||| |||||||||| || || ||| |||||||| | TGGACCAGTT TAGCAACTTA GATTTTTGGG ACATTTCTTT AGTCGATGGA TTTAATATTC 328 CGATGACTTT CGCCCCAACC AATCCTAGTG GAGGAAAATG CCATGCAATT CATTGCACGG 41182 | |||||||| |||||||| || ||||||| |||||||||| || |||||| |||||||||| CAATGACTTT TGCCCCAACA AAACCTAGTG GAGGAAAATG TCACGCAATT CATTGCACGG 388 CTAATATAAA CGGTGAATGC CCTAGTCCAC TTAGGGTACC CGGAGGATGT AACAACCCTT 41122 | |||||||| |||||||| ||| | | | ||| |||||| ||||||||| |||||||||| CCAATATAAA TGGTGAATGT CCTCGCGCCC TTAAGGTACC TGGAGGATGT AACAACCCTT 448 GTACCACGTT CGGAGGACAA CAATATTGTT GTACTCAAGG CCCATGTGGT CCTACAAAAT 41062 |||||||||| ||||||||| |||||||||| | || ||||| |||||||| |||||| | | GTACCACGTT TGGAGGACAA CAATATTGTT GCACCCAAGG TCCATGTGGC CCTACAGAGT 508 TTTCGAGATT TTTCAAACAA AGGTGCCCTA ATGCGTATAG CTACCCTCAA GATGATCCTA 41002 | || | ||| |||||| || || || || |||| ||||| |||||| ||| || ||||||| TGTCCAAATT TTTCAAGAAA AGATGTCCCG ATGCTTATAG CTACCCACAA GACGATCCTA 568 CTAGCTTATT CACTTG-CCC TAGTGGTAGT ACAAATTATA GGGTTGTTTT TTGCCCATAA 40943 | ||| ||| ||||| ||| | |||||||| ||||| |||| ||||||| || ||| || ||| CAAGCACATT TACTTGCCCC TGGTGGTAGT ACAAACTATA GGGTTGTCTT TTGTCC-TAA 627 TTGATGCCAC AAT 40930 | | || || TGGGTGTGCT GAT 640 hqPGS_C08HBa0235H18.1-_SGN-U333798+ (41499 40930) ******************************************************************************** EST sequence 36 +strand 922 n (File: SGN-U312653+) 1 GGCGATTGGC GGCCAATCGG CCGAATTGAA CAACTTACAT TTAAAAAAAT AGTTCCACAA 61 ACATGGCCTA CTTGAGATCT TCTTTTGTTT TCTTCCTTCT TGCTTTTGTG ACTTACACTT 121 ATGCTGCCAC TTTCGAGGTA CGCAACAACT GTCCATACAC CGTCTGGGCG GCGTCGACCC 181 CAATAGGCGG TGGTCGACGT CTTGATCGAG GCCAAACATG GGTCATCAAT GCACCGAGGG 241 GCACTAAGAT GGCACGTATA TGGGGTCGTA CGAATTGCAA CTTTGATGGT GCTGGTAGAG 301 GTTCATGTCA GACTGGTGAT TGTGGTGGGG TCTTGCAATG TACCGGGTGG GGCAAACCAC 361 CAAACACCCT GGCCGAGTAC GCCTTGGACC AGTTTAGCAA CCTAGATTTC TGGGACATTT 421 CTTTAGTCGA TGGATTTAAT ATTCCAATGA CTTTCGCCCC GACCAATCCT AGTGGAGGGA 481 AATGCCATGC AATTCATTGT ACGGCTAATA TAAATGGTGA ATGTCCTGGT TCACTTAGGG 541 TACCCGGAGG ATGTAACAAT CCTTGTACCA CGTTCGGAGG ACAACAATAT TGTTGCACAC 601 AAGGTCCATG TGGCCCTACT GATTTGTCGA GATTTTTCAA ACAAAGATGT CCTGATGCGT 661 ATAGCTACCC ACAAGATGAT CCTACTAGCA CATTTACTTG CCCTAGTGGT AGTACAAATT 721 ATAGGGTTGT TTTTTGTCCT AATGGTGTTA CTAGCCCAAA TTTCCCCTTG GAGATGCCCT 781 CAAGTGATGA AGAGGCTAAG TAAAATTGAG TCACTTTCTT TTAAATTGCT TGAAGTAGTC 841 GAGTTATATA ATTGGCTTGT AATAAACCTA ATATAATTAC ATGAATAAAA GTCACATCAT 901 CACAAAAAAA AAAATGTTGT TT Predicted gene structure (within gDNA segment 43248 to 38480): Exon 1 41641 40933 ( 709 n); cDNA 45 751 ( 707 n); score: 0.904 PPA cDNA 902 914 MATCH C08HBa0235H18.1- SGN-U312653+ 0.904 709 0.769 C PGS_C08HBa0235H18.1-_SGN-U312653+ (41641 40933) Alignment (genomic DNA sequence = upper lines): AAAAATATGT ACACAAACAT GGGCTACTTG ACATCTTCTT TTATTTTCTT CTTCCTTGCT 41582 ||||||| | ||||||||| || ||||||| | |||||||| || ||||||| | | |||||| AAAAATAGTT CCACAAACAT GGCCTACTTG AGATCTTCTT TTGTTTTCTT CCTTCTTGCT 104 TTAGTGACTT ACACTTATGC TGCCACTATC GAGGTACGCA ACAATTGTCC CTACACCGTT 41522 || ||||||| |||||||||| ||||||| || |||||||||| |||| ||||| |||||||| TTTGTGACTT ACACTTATGC TGCCACTTTC GAGGTACGCA ACAACTGTCC ATACACCGTC 164 TGGGCAGCAT CGACCCCGAT AGGCGGTGGT CGACGTCTCG ATCGAGGCCA AACATGGGTC 41462 ||||| || | ||||||| || |||||||||| |||||||| | |||||||||| |||||||||| TGGGCGGCGT CGACCCCAAT AGGCGGTGGT CGACGTCTTG ATCGAGGCCA AACATGGGTC 224 ATCAATGCGC CGAGGGGCAC TAAGATGGCA CGTATATGGG GTCGTACTAA TTGCAATTTT 41402 |||||||| | |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| ATCAATGCAC CGAGGGGCAC TAAGATGGCA CGTATATGGG GTCGTACGAA TTGCAACTTT 284 AATGGTGCTG GTAGAGGTTC ATGCCAAACT GGTGATTGTG GTGGGGTCCT ACACTGTACC 41342 ||||||||| |||||||||| ||| || ||| |||||||||| |||||||| | || |||||| GATGGTGCTG GTAGAGGTTC ATGTCAGACT GGTGATTGTG GTGGGGTCTT GCAATGTACC 344 GGGTGGGGCA AACCCCCAAA CACCCTAGCT GAATATGCTT TGGACCAATT CAGCAACCTA 41282 |||||||||| |||| ||||| |||||| || || || || | ||||||| || ||||||||| GGGTGGGGCA AACCACCAAA CACCCTGGCC GAGTACGCCT TGGACCAGTT TAGCAACCTA 404 GATTTCTGGG ACATTTCTTT GGTTGACGGA TTTAATATAC CGATGACTTT CGCCCCAACC 41222 |||||||||| |||||||||| || || ||| |||||||| | | |||||||| |||||| ||| GATTTCTGGG ACATTTCTTT AGTCGATGGA TTTAATATTC CAATGACTTT CGCCCCGACC 464 AATCCTAGTG GAGGAAAATG CCATGCAATT CATTGCACGG CTAATATAAA CGGTGAATGC 41162 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| |||||||| AATCCTAGTG GAGGGAAATG CCATGCAATT CATTGTACGG CTAATATAAA TGGTGAATGT 524 CCTAGTCCAC TTAGGGTACC CGGAGGATGT AACAACCCTT GTACCACGTT CGGAGGACAA 41102 ||| || ||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CCTGGTTCAC TTAGGGTACC CGGAGGATGT AACAATCCTT GTACCACGTT CGGAGGACAA 584 CAATATTGTT GTACTCAAGG CCCATGTGGT CCTACAAAAT TTTCGAGATT TTTCAAACAA 41042 |||||||||| | || ||||| |||||||| ||||| | | | |||||||| |||||||||| CAATATTGTT GCACACAAGG TCCATGTGGC CCTACTGATT TGTCGAGATT TTTCAAACAA 644 AGGTGCCCTA ATGCGTATAG CTACCCTCAA GATGATCCTA CTAGCTTATT CACTTGCCCT 40982 || || ||| |||||||||| |||||| ||| |||||||||| ||||| ||| ||||||||| AGATGTCCTG ATGCGTATAG CTACCCACAA GATGATCCTA CTAGCACATT TACTTGCCCT 704 AGTGGTAGTA CAAATTATAG GGTTGTTTTT TGCCCATAAT TGATGCCAC 40933 |||||||||| |||||||||| |||||||||| || || ||| || || || AGTGGTAGTA CAAATTATAG GGTTGTTTTT TGTCC-TAA- TGGTGTTAC 751 hqPGS_C08HBa0235H18.1-_SGN-U312653+ (41641 40933) ******************************************************************************** EST sequence 49 +strand 832 n (File: SGN-U333797+) 1 TTTTTTTTCC TTCTTGCTTT TGTGACTTAC ACTTATGCTG CCACTTTCGA GGTACGCAAC 61 AACTGTCCAT ACACCGTCTG GGCGGCGTCG ACCCCAATAG GCGGTGGTCG ACGTCTTGAT 121 CGAGGCCAAA CATGGGTCAT CAATGCACCG AGGGGCACTA AGATGGCACG TATATGGGGT 181 CGTACGAATT GCAACTTTGA TGGTGATGGT AGAGGTTCAT GTCAGACTGG TGATTGTGGT 241 GGGGTCTTGC AATGTACCGG GTGGGGCAAA CCACCAAACA CCCTGGCCGA GTACGCCTTG 301 GACCAGTTTA GCAACCTAGA TTTCTGGGAC ATTTCTTTAG TCGATGGATT TAATATTCCA 361 ATGACTTTCG CCCCGACCAA TCCTAGTGGA GGGAAATGCC ATGCAATTCA TTGTACGGCT 421 AATATAAATG GTGAATGTCC TGGTTCACTT AGGGTACCCG GAGGATGTAA CAATCCTTGT 481 ACCACGTTCG GAGGACAACA ATATTGTTGC ACACAAGGTC CATGTGGCCC TACTGATTTG 541 TCGAGATTTT TCAAACAAAG ATGTCCTGAT GCGTATAGCT ACCCACAAGA TGATCCTACT 601 AGCACATTTA CTTGCCCTAG TGGTAGTACA AATTATAGGG TTGTTTTTTG TCCTAATGGT 661 GTTACTAGCC CAAATTTCCC CTTGGAGATG CCCTCAAGTG ATGAAGAGGC TAAGTAAAAT 721 TGAGTCACTT TCTTTTAAAT TGCTTGAAGT AGTCGAAGTT ATATAATTGG CTTGTAATAA 781 ACCTAATATA ATTACATGAA TAAAAGTCAC ATCATCACAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 42388 to 38520): Exon 1 41598 40933 ( 666 n); cDNA 2 665 ( 664 n); score: 0.904 PPA cDNA 817 832 MATCH C08HBa0235H18.1- SGN-U333797+ 0.904 666 0.800 C PGS_C08HBa0235H18.1-_SGN-U333797+ (41598 40933) Alignment (genomic DNA sequence = upper lines): TTTTCTTCTT CCTTGCTTTA GTGACTTACA CTTATGCTGC CACTATCGAG GTACGCAACA 41539 |||| ||| | |||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTTTTTTCCT TCTTGCTTTT GTGACTTACA CTTATGCTGC CACTTTCGAG GTACGCAACA 61 ATTGTCCCTA CACCGTTTGG GCAGCATCGA CCCCGATAGG CGGTGGTCGA CGTCTCGATC 41479 | ||||| || |||||| ||| || || |||| |||| ||||| |||||||||| ||||| |||| ACTGTCCATA CACCGTCTGG GCGGCGTCGA CCCCAATAGG CGGTGGTCGA CGTCTTGATC 121 GAGGCCAAAC ATGGGTCATC AATGCGCCGA GGGGCACTAA GATGGCACGT ATATGGGGTC 41419 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GAGGCCAAAC ATGGGTCATC AATGCACCGA GGGGCACTAA GATGGCACGT ATATGGGGTC 181 GTACTAATTG CAATTTTAAT GGTGCTGGTA GAGGTTCATG CCAAACTGGT GATTGTGGTG 41359 |||| ||||| ||| ||| || |||| ||||| |||||||||| || |||||| |||||||||| GTACGAATTG CAACTTTGAT GGTGATGGTA GAGGTTCATG TCAGACTGGT GATTGTGGTG 241 GGGTCCTACA CTGTACCGGG TGGGGCAAAC CCCCAAACAC CCTAGCTGAA TATGCTTTGG 41299 ||||| | || ||||||||| |||||||||| | |||||||| ||| || || || || |||| GGGTCTTGCA ATGTACCGGG TGGGGCAAAC CACCAAACAC CCTGGCCGAG TACGCCTTGG 301 ACCAATTCAG CAACCTAGAT TTCTGGGACA TTTCTTTGGT TGACGGATTT AATATACCGA 41239 |||| || || |||||||||| |||||||||| ||||||| || || |||||| ||||| || | ACCAGTTTAG CAACCTAGAT TTCTGGGACA TTTCTTTAGT CGATGGATTT AATATTCCAA 361 TGACTTTCGC CCCAACCAAT CCTAGTGGAG GAAAATGCCA TGCAATTCAT TGCACGGCTA 41179 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| || ||||||| TGACTTTCGC CCCGACCAAT CCTAGTGGAG GGAAATGCCA TGCAATTCAT TGTACGGCTA 421 ATATAAACGG TGAATGCCCT AGTCCACTTA GGGTACCCGG AGGATGTAAC AACCCTTGTA 41119 ||||||| || |||||| ||| || |||||| |||||||||| |||||||||| || ||||||| ATATAAATGG TGAATGTCCT GGTTCACTTA GGGTACCCGG AGGATGTAAC AATCCTTGTA 481 CCACGTTCGG AGGACAACAA TATTGTTGTA CTCAAGGCCC ATGTGGTCCT ACAAAATTTT 41059 |||||||||| |||||||||| |||||||| | | ||||| || |||||| ||| || | || | CCACGTTCGG AGGACAACAA TATTGTTGCA CACAAGGTCC ATGTGGCCCT ACTGATTTGT 541 CGAGATTTTT CAAACAAAGG TGCCCTAATG CGTATAGCTA CCCTCAAGAT GATCCTACTA 40999 |||||||||| ||||||||| || ||| ||| |||||||||| ||| |||||| |||||||||| CGAGATTTTT CAAACAAAGA TGTCCTGATG CGTATAGCTA CCCACAAGAT GATCCTACTA 601 GCTTATTCAC TTGCCCTAGT GGTAGTACAA ATTATAGGGT TGTTTTTTGC CCATAATTGA 40939 || ||| || |||||||||| |||||||||| |||||||||| ||||||||| || ||| || GCACATTTAC TTGCCCTAGT GGTAGTACAA ATTATAGGGT TGTTTTTTGT CC-TAA-TGG 659 TGCCAC 40933 || || TGTTAC 665 hqPGS_C08HBa0235H18.1-_SGN-U333797+ (41598 40933) ******************************************************************************** EST sequence 39 +strand 1014 n (File: SGN-U312654+) 1 CGGCCAAATC GGCCGAATTG ATATATACAT TTCAACAAAC ATGGGCTACT TGACATCTTC 61 TTTTGTTCTC TTCTTCCTTC TTTGTGTGAC TTATACTTAT GCTGCCACTA TTGAGGTACG 121 CAACAACTGT CCATACACCG TTTGGGCGGC ATCGACTCCG ATAGGCGGTG GTCGACGTCT 181 CAATCGAGGC CAAACATGGG TCATCAATGC TCCGAGGGGA ACTAAGATGG CACGTATATG 241 GGGTCGTACT GGTTGCAACT TTAATGCTGC AGGCAGAGGT ACATGTCAGA CTGGTGATTG 301 TGGTGGAGTC TTACAGTGTA CCGGATGGGG CAAACCCCCA AACACCCTAG CCGAGTACGC 361 CTTGGACCAG TTTAGCAACT TAGATTTTTG GGACATTTCT TTAGTCGATG GATTTAATAT 421 TCCAATGACT TTTGCCCCAA CAAAACCTAG TGGAGGAAAA TGTCACGCAA TTCATTGCAC 481 GGCCAATATA AATGGTGAAT GTCCTCGCGC CCTTAAGGTA CCTGGAGGAT GTAACAACCC 541 TTGTACCACG TTTGGAGGAC AACAATATTG TTGCACCCAA GGTCCATGTG GCCCTACAGA 601 GTTGTCCAAA TTTTTCAAGA AAAGATGTCC CGATGCTTAT AGCTACCCAC AAGACGATCC 661 TACAAGCACA TTTACTTGCC CTGGTGGTAG TACAAACTAT AGGGTTGTCT TTTGTCCTAA 721 TGGTGTTGCT GATCCAAATT TCCCCTTGGA GATGCCTGCA AGTACTGATG AAGTGGCCAA 781 GTGAATTTGA GTTTCTTCAT TTTAAATCGC CTCAATTAGT CAACTGATCT CTACCGTAAT 841 GAAAAATCTT AATAGCTCAG TTTTTTAAAT ATTCACTTTT ACTTTATTGA TAAGAGTTCG 901 TAACAAACTT AAAGACCGGA ATAAGAGTTA CATCTCATGT GTACTTTTGT CTTAGATGTA 961 TAAAACAACA GTGCATTTGA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 46537 to 38509): Exon 1 41656 40947 ( 710 n); cDNA 8 717 ( 710 n); score: 0.863 PPA cDNA 980 1014 MATCH C08HBa0235H18.1- SGN-U312654+ 0.863 710 0.700 C PGS_C08HBa0235H18.1-_SGN-U312654+ (41656 40947) Alignment (genomic DNA sequence = upper lines): ATATCAAAAA TAAACAAAAA TATGTACACA AACATGGGCT ACTTGACATC TTCTTTTATT 41597 || || | | | | | || | ||| |||||||||| |||||||||| ||||||| || ATCGGCCGAA TTGATATATA CATTTCAACA AACATGGGCT ACTTGACATC TTCTTTTGTT 67 TTCTTCTTCC TTGCTTTAGT GACTTACACT TATGCTGCCA CTATCGAGGT ACGCAACAAT 41537 ||||||||| || || || |||||| ||| |||||||||| |||| ||||| ||||||||| CTCTTCTTCC TTCTTTGTGT GACTTATACT TATGCTGCCA CTATTGAGGT ACGCAACAAC 127 TGTCCCTACA CCGTTTGGGC AGCATCGACC CCGATAGGCG GTGGTCGACG TCTCGATCGA 41477 ||||| |||| |||||||||| |||||||| |||||||||| |||||||||| |||| ||||| TGTCCATACA CCGTTTGGGC GGCATCGACT CCGATAGGCG GTGGTCGACG TCTCAATCGA 187 GGCCAAACAT GGGTCATCAA TGCGCCGAGG GGCACTAAGA TGGCACGTAT ATGGGGTCGT 41417 |||||||||| |||||||||| ||| |||||| || ||||||| |||||||||| |||||||||| GGCCAAACAT GGGTCATCAA TGCTCCGAGG GGAACTAAGA TGGCACGTAT ATGGGGTCGT 247 ACTAATTGCA ATTTTAATGG TGCTGGTAGA GGTTCATGCC AAACTGGTGA TTGTGGTGGG 41357 ||| ||||| | ||||||| ||| || ||| ||| |||| | | |||||||| ||||||||| ACTGGTTGCA ACTTTAATGC TGCAGGCAGA GGTACATGTC AGACTGGTGA TTGTGGTGGA 307 GTCCTACACT GTACCGGGTG GGGCAAACCC CCAAACACCC TAGCTGAATA TGCTTTGGAC 41297 ||| |||| | ||||||| || |||||||||| |||||||||| |||| || || || |||||| GTCTTACAGT GTACCGGATG GGGCAAACCC CCAAACACCC TAGCCGAGTA CGCCTTGGAC 367 CAATTCAGCA ACCTAGATTT CTGGGACATT TCTTTGGTTG ACGGATTTAA TATACCGATG 41237 || || |||| || ||||||| ||||||||| ||||| || | | |||||||| ||| || ||| CAGTTTAGCA ACTTAGATTT TTGGGACATT TCTTTAGTCG ATGGATTTAA TATTCCAATG 427 ACTTTCGCCC CAACCAATCC TAGTGGAGGA AAATGCCATG CAATTCATTG CACGGCTAAT 41177 ||||| |||| |||| || || |||||||||| ||||| || | |||||||||| |||||| ||| ACTTTTGCCC CAACAAAACC TAGTGGAGGA AAATGTCACG CAATTCATTG CACGGCCAAT 487 ATAAACGGTG AATGCCCTAG TCCACTTAGG GTACCCGGAG GATGTAACAA CCCTTGTACC 41117 ||||| |||| |||| ||| | | |||| | ||||| |||| |||||||||| |||||||||| ATAAATGGTG AATGTCCTCG CGCCCTTAAG GTACCTGGAG GATGTAACAA CCCTTGTACC 547 ACGTTCGGAG GACAACAATA TTGTTGTACT CAAGGCCCAT GTGGTCCTAC AAAATTTTCG 41057 ||||| |||| |||||||||| |||||| || ||||| |||| |||| ||||| | | || || ACGTTTGGAG GACAACAATA TTGTTGCACC CAAGGTCCAT GTGGCCCTAC AGAGTTGTCC 607 AGATTTTTCA AACAAAGGTG CCCTAATGCG TATAGCTACC CTCAAGATGA TCCTACTAGC 40997 | |||||||| | |||| || || |||| |||||||||| | ||||| || |||||| ||| AAATTTTTCA AGAAAAGATG TCCCGATGCT TATAGCTACC CACAAGACGA TCCTACAAGC 667 TTATTCACTT GCCCTAGTGG TAGTACAAAT TATAGGGTTG TTTTTTGCCC 40947 ||| |||| ||||| |||| ||||||||| |||||||||| | ||||| || ACATTTACTT GCCCTGGTGG TAGTACAAAC TATAGGGTTG TCTTTTGTCC 717 hqPGS_C08HBa0235H18.1-_SGN-U312654+ (41656 40947) ******************************************************************************** EST sequence 41 +strand 709 n (File: SGN-U312655+) 1 TGGTGGAGTC TTACAGTGTA CCGGATGGGG CAAACCCCCT TACACCGTAG CCGAATACCC 61 CTTGCACCAA TTTATCAACT TAAATTTGAG GAAGATTTCT TCAGGCGATG GATTTGATAA 121 TCCATTGACT TTTGCCCCGT CATAACCTAT TGGAGGAAAA TGTCACGCAA TTCATTGCAC 181 GGCCGATATA AATGGTGAAT GTCCGCGCGC CCATAGGGTA CCGGGAGGAT GTAACGGCCC 241 TTGTACCACG TTTGGAGGAC AACAATATTG TTGCACCCAA GGTCCATGTG GCCCTACATA 301 GTTGTCCAAA TTTTTCAAGA AAAGATGTCC CGATGCTTAT AGCTACCCAC AAGACGATCC 361 TACAAGCACA TTTACTTGCC CTGGTGGTAG TACAAACTAT AGGGTTGTCT TTTGTCCTAA 421 TGGTGTTGCT GATCCAAATT TCCCCTTGGA GATGCCTGCA AGTACTGATG AAGTGGCCAA 481 GTGAATTTGA GTTTCTTCAT TTTAAATCGC CTCAATTAGT CAACTGATCT CTACCGTAAT 541 GAAAAATCTT AATAGCTCAG TTTTTTAAAT ATTCCCTTTT ACTTTATTGA TAAGAATTCG 601 TAACAAACTT AAAGAACGGA ATAAGAATTA CATCTCATGG GGACTTTTGG CCTAAAAGGA 661 TAAAACAACA GTGCATTTGG AAAAAAAANN AAAAAAAAAA AAAANAAAA Predicted gene structure (within gDNA segment 46399 to 38559): Exon 1 41363 40947 ( 417 n); cDNA 1 417 ( 417 n); score: 0.811 PPA cDNA 691 709 MATCH C08HBa0235H18.1- SGN-U312655+ 0.811 417 0.588 C PGS_C08HBa0235H18.1-_SGN-U312655+ (41363 40947) Alignment (genomic DNA sequence = upper lines): TGGTGGGGTC CTACACTGTA CCGGGTGGGG CAAACCCCCA AACACCCTAG CTGAATATGC 41304 |||||| ||| |||| |||| |||| ||||| ||||||||| ||||| ||| | ||||| | TGGTGGAGTC TTACAGTGTA CCGGATGGGG CAAACCCCCT TACACCGTAG CCGAATACCC 60 TTTGGACCAA TTCAGCAACC TAGATTTCTG GGACATTTCT TTGGTTGACG GATTTAATAT 41244 ||| ||||| || | |||| || |||| | | | |||||| | | || | ||||| ||| CTTGCACCAA TTTATCAACT TAAATTTGAG GAAGATTTCT TCAGGCGATG GATTTGATAA 120 ACCGATGACT TTCGCCCCAA CCAATCCTAG TGGAGGAAAA TGCCATGCAA TTCATTGCAC 41184 || ||||| || ||||| | | |||| |||||||||| || || |||| |||||||||| TCCATTGACT TTTGCCCCGT CATAACCTAT TGGAGGAAAA TGTCACGCAA TTCATTGCAC 180 GGCTAATATA AACGGTGAAT GCCCTAGTCC ACTTAGGGTA CCCGGAGGAT GTAACAACCC 41124 ||| ||||| || ||||||| | || | | | ||||||| || ||||||| ||||| ||| GGCCGATATA AATGGTGAAT GTCCGCGCGC CCATAGGGTA CCGGGAGGAT GTAACGGCCC 240 TTGTACCACG TTCGGAGGAC AACAATATTG TTGTACTCAA GGCCCATGTG GTCCTACAAA 41064 |||||||||| || ||||||| |||||||||| ||| || ||| || ||||||| | |||||| | TTGTACCACG TTTGGAGGAC AACAATATTG TTGCACCCAA GGTCCATGTG GCCCTACATA 300 ATTTTCGAGA TTTTTCAAAC AAAGGTGCCC TAATGCGTAT AGCTACCCTC AAGATGATCC 41004 || || | | |||||||| |||| || || |||| ||| |||||||| | |||| ||||| GTTGTCCAAA TTTTTCAAGA AAAGATGTCC CGATGCTTAT AGCTACCCAC AAGACGATCC 360 TACTAGCTTA TTCACTTGCC CTAGTGGTAG TACAAATTAT AGGGTTGTTT TTTGCCC 40947 ||| ||| | || ||||||| || ||||||| |||||| ||| |||||||| | |||| || TACAAGCACA TTTACTTGCC CTGGTGGTAG TACAAACTAT AGGGTTGTCT TTTGTCC 417 hqPGS_C08HBa0235H18.1-_SGN-U312655+ (41363 40947) ******************************************************************************** EST sequence 67 -strand 647 n (File: SGN-U315283-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CCGTTAAATA CGGTTTTCCA 421 ACGACTAACT TATTTGATTA TTTTTATTTT TACCCTTTGC AAATTTATTT GAACTTTTAT 481 CACGATTTAC TTAGCCAAAC TTTGCAAATT TGAGATATTA ATCTTTTAAG ATTCCGTCTT 541 AGTTAAACTT TCTAAGCCTT AACTCTCTAA GCAGACTTTC AAATTTTAAA CCTCTATCGT 601 TTCAAAACTT CAATTTTTAT TTTTTAGTTT CATAAAGCAA AAGGCGT Predicted gene structure (within gDNA segment 39216 to 46247): Exon 1 42039 42080 ( 42 n); cDNA 264 303 ( 40 n); score: 0.643 Intron 1 42081 42395 ( 315 n); Pd: 0.900 (s: 0.64), Pa: 0.000 (s: 0) Exon 2 42396 42417 ( 22 n); cDNA 304 324 ( 21 n); score: 0.773 Intron 2 42418 44023 (1606 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.75) Exon 3 44024 44264 ( 241 n); cDNA 325 568 ( 244 n); score: 0.763 MATCH C08HBa0235H18.1+ SGN-U315283- 0.763 305 0.471 C PGS_C08HBa0235H18.1+_SGN-U315283- (42039 42080,42396 42417,44024 44264) Alignment (genomic DNA sequence = upper lines): GCAAGAAAGT TTTTGGAATT AAACACAACA AAAATAATCC TCATATCCTA TTTTTAACTA 42098 || | | | |||| || ||| ||| | ||| | || | || GCCACTTAAT TTTT--AAGA AAAATCAAGA AAACTCATTC TC........ .......... 303 ATACTTTAAT GTGTCTAGAT TTTTATTAAT ATGTCTGCTT TATATTAAAA TTTCATTTTT 42158 .......... .......... .......... .......... .......... .......... 303 TTAAAAAATA ATAGGAAAAT TCTCAGACCG TCCATAAAGA AAAATCAAAA TTAAATAGTT 42218 .......... .......... .......... .......... .......... .......... 303 TCTTCTATTC AAAATTAAGA TGAGTTGTCA CCATACTTTT AGAATTTTTG ATTTTTTTAT 42278 .......... .......... .......... .......... .......... .......... 303 GCAAGAATAA GACTTACGAG AACAAATGGT AATCAAAATA AGATAGGAAA AAGGGTCAAA 42338 .......... .......... .......... .......... .......... .......... 303 TTTCCTTTTT TTTTCGCCTA ACTTATTTTA TTAACTAATT CATATTTAGT TGTGTCTAAA 42398 ||| .......... .......... .......... .......... .......... .......AAA 306 ACAGGTTTAA CTGATAAAGG TTAAATAAAA AAAAATGTTA CTACTGTGTT GATTTATCAA 42458 ||| || || | || |||| ACAATTTAAA CAGA-AAAG. .......... .......... .......... .......... 324 TTTTGGGTTA TTGAATTAAC CGTCTTAGAA TATTAGTTCA GCTTCCAATT TTAAAATTTT 42518 .......... .......... .......... .......... .......... .......... 324 AGTTAATGAT TAAATCAATA ACCTAATAAA ATTATATTAA AACTACTTTT TTTTATTTTT 42578 .......... .......... .......... .......... .......... .......... 324 ATTTCTATTT ATATAATAAT GACTTTATTT AAACTTCAAA TACAAAACCT ATTTTCTTTT 42638 .......... .......... .......... .......... .......... .......... 324 GCATTTTATA ATCAATGTAT TGATGCTGAT GTGTTTTGTG CACTTGTTAA AGTTGTGTTA 42698 .......... .......... .......... .......... .......... .......... 324 TTATATTATT TTAATATTAA TATAATAAAT GAAGCAGTGT TTTTGCTTGT AAATTTCTAG 42758 .......... .......... .......... .......... .......... .......... 324 ATTTCTATTT ATGAAGTTCT GACTTAAACG TATCTAACGA ATAATTAAAT AAAAAATCAA 42818 .......... .......... .......... .......... .......... .......... 324 GTATTTAAGG ATCGATAGTT GATTATCTAA ATTATTGATC ATTGATTTAG CATGTTTATA 42878 .......... .......... .......... .......... .......... .......... 324 AATAAAAAAT CGATAAACTA AACCACAAAA TCTAACCAGT AAACATTGAG ACCATATCGA 42938 .......... .......... .......... .......... .......... .......... 324 ATACACCTAC AAGTAATTCA TTAATAAGTT TCAAATTCAA TATACAACAA CAAAAAAAAA 42998 .......... .......... .......... .......... .......... .......... 324 AGGCAAGAAA ATGTTGAAGT AAAGTAAATA ACGACACACG ATTATTAAAG ATATTATTAT 43058 .......... .......... .......... .......... .......... .......... 324 TTGTTCATCA ATGATCAAAA TATATAAGTT GAAGGGAGTG TGTATACATT ACACAAATAA 43118 .......... .......... .......... .......... .......... .......... 324 GATATTATTA TCTCACCCAA CATAAATAGT TTAACAAACC TTTTAAGATA CTTATTGTTT 43178 .......... .......... .......... .......... .......... .......... 324 TGGTAATTTT TCATACCATA TAATTTGTAG CAAAATATGC TTTATATTGT GGCATTAATT 43238 .......... .......... .......... .......... .......... .......... 324 ATGGGCAAAA AACAACCTTA TAATTTGTAC TATCACTAGG GCAAGCAAAT GTGCTAGTAG 43298 .......... .......... .......... .......... .......... .......... 324 CATCATCTTG TGGGTAGCTA TAGGCATCAG GGCATCTCTG TTTGAAAAAT TTCGACCACT 43358 .......... .......... .......... .......... .......... .......... 324 CAGTAGGACT ACATGGACCT TGGGTGCAAC AATATTGTTG TCCTCCAAAC GTGGTACAAG 43418 .......... .......... .......... .......... .......... .......... 324 GATTGTTACA TCCTCCGGTT ACTTTAAGTT GACTAGGGCA TTCACCGTTT ATATTGGCGG 43478 .......... .......... .......... .......... .......... .......... 324 TGCATTGAAT TGAGTGGCAT TTTCCTCCAC TGGAATTGGT TGTGGCGAAA GTCATCGGTA 43538 .......... .......... .......... .......... .......... .......... 324 TATTAAATCC ATCGACTAAA GAAATGTCCC AGAAATCTAG GTTGTTAAAC TGGTTCAAGG 43598 .......... .......... .......... .......... .......... .......... 324 CGTATTCGGT CAAGGTGTTT GGCGGTTTAC CCCACCCGGT ACACTGCAAG ACTCCACCAC 43658 .......... .......... .......... .......... .......... .......... 324 AATCACCAGT CTCACAAGAA CCTCTACCAG CACCGTCAAA GTTGCATTTA GTACGACCCC 43718 .......... .......... .......... .......... .......... .......... 324 ATATACGTGC CATCTTAGTG CCCCTCAGTG CATTGATGGT CCAAGTCTGG CCTTGATTGA 43778 .......... .......... .......... .......... .......... .......... 324 GACGTTGAAA AATCTTTTTT TTTTCATGTT TCTTGTTTAT TTTAAATTTT ATATATTTGT 43838 .......... .......... .......... .......... .......... .......... 324 TTGTTTGTTT TTTTCTCTGA AAGAACGTTT CTCTCTTCTT CTTTTTTTTA TTATTTTATT 43898 .......... .......... .......... .......... .......... .......... 324 TTATCATTAT TTTTAGTATA TTATTATTTT ATAGTTTTGT CTTCTTCTTT TCTTTTTTTT 43958 .......... .......... .......... .......... .......... .......... 324 TTTCCAATTA TTTTGTACTA ATTTTGTTAT TCTTTTATCG TTTTTTTTAA TTGTGTTGTT 44018 .......... .......... .......... .......... .......... .......... 324 ATTATTTGTT TTGA-AACAT T-TTAAGGGT TCGGGATTCC TATTAGTATC TTAGGAAGGT 44076 | ||| |||| || || | || ||| | ||||||||| |||||| || |||||||||| .....TCGTT TTGAAAATAT TTTTTAGGAT TCGGGATTCT TATTAGCGTC TTAGGAAGGT 379 G--TAAGGCA CCCAAAACAC TCCGTTAACT TACGGTTTTC CAATGATTAA C-TATTTGAT 44133 | ||||||| || || |||| |||||||| | ||||||||| ||| || ||| | |||||||| GTTTAAGGCA CCTAAGACAC TCCGTTAAAT -ACGGTTTTC CAACGACTAA CTTATTTGAT 438 TATTTTTATT TTTAACCTTT GCAAATTTAT TTGAACTTTT AACATGACTT ACTTAGCCAA 44193 |||||||||| |||| ||||| |||||||||| |||||||||| | || || || |||||||||| TATTTTTATT TTTACCCTTT GCAAATTTAT TTGAACTTTT ATCACGATTT ACTTAGCCAA 498 ACTTAGCCAA TTTTGAAATA TTTATTGTTT ATCTTGCCAG TTTACGAAAC CATTTCAAAG 44253 |||| | ||| ||||| ||| || || ||| | | || ||| || | |||| ||| ACTTTG-CAA ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA C-TTTCTAAG 556 -TTAAGCTTA CT 44264 | | || || CCTTAACTCT CT 568 hqPGS_C08HBa0235H18.1+_SGN-U315283- (42396 42417,44024 44264) ******************************************************************************** EST sequence 79 -strand 798 n (File: SGN-U332003-) 1 TTTTTTTTTT TTGTTGCAAA CAATCACAAT ATGCAATTGT TTTTATCATC TAAGTCCTTT 61 GGAATATAAT GTAACAATCG ATGGATAATG TAATAGCTAT TGAAAACAAG TTATAAACTG 121 CAGTATAAAG AAATTGAAGC ACAAGACTTT CTTCTAGATG AAAATTTTTT TTAATCATAA 181 AGAACAAAAT CTCAAATTAT GTATATCACG TAACTAAACT CTAAATAAAT AATTAATTCA 241 ACGTACATTA AAATATAAAT AAGTAACTTA AATTTAAACT TTAAAATAAA ATAGAAGAGA 301 ACTCATTGCC TATTGTTTTA TCGAAAAAGG TGATTTTCGA AAAGAGTTTG TTTTTAGACT 361 TTTAGGAGTC GCCACTTAAT TTTTAAGAAA AATCAAGAAA ACTTCGTTTC TAAACAACTT 421 AAACAGAAAA ATTGTTTTGA AACATTTTAA GGGTTCAAGA TTCCTATTAG TATCTTAAGA 481 AGGTGTAAGG CACCTAAGAC ACTCCGTTAA ATACAGTTTT CCGACGATTA ACTTATTTGA 541 CTATTTTGTT TTAAAGACTT GCGAATTTTG AACTTCTTAA GATATCTAGG AAAACTTTAT 601 AAATTTGAAA CATTTATTGT TTTAAGATTC CGTTAACATT AAAACTTTTC GAACTTTAAT 661 TCTAAGTGAC TTTCAAATTC GAACGCCTTT AAAGTTTCGA TTTTTTAGTT TCGAGTTTGA 721 TAAAGCAAAA GGCGTTTGAT GGGGTTTGGA TTCTTCTAAT CCTAAGCTAA CGACATTTAA 781 AACAAAAACG TCAACAAA Predicted gene structure (within gDNA segment 39104 to 47726): Exon 1 41817 41858 ( 42 n); cDNA 372 412 ( 41 n); score: 0.619 Intron 1 41859 42983 (1125 n); Pd: 0.348 (s: 0.62), Pa: 0.000 (s: 0) Exon 2 42984 43000 ( 17 n); cDNA 413 429 ( 17 n); score: 0.706 Intron 2 43001 44021 (1021 n); Pd: 0.769 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 44022 44425 ( 404 n); cDNA 430 798 ( 369 n); score: 0.726 PPA cDNA 15 1 MATCH C08HBa0235H18.1+ SGN-U332003- 0.726 463 0.580 C PGS_C08HBa0235H18.1+_SGN-U332003- (41817 41858,42984 43000,44022 44425) Alignment (genomic DNA sequence = upper lines): CCACTTAAAT TGGAGGAGGA ATAGAGAAAG TCATCACATG AAGTGATATT AATGACAATA 41876 |||||||| | | | || | || ||||| | || | | CCACTTAATT TTTAAGAAAA ATCAAGAAA- ACTTCGTTTC TA........ .......... 412 TTATATAATT GTCTTTTAAT TTGTTAGCAA CAATAAAAAA TTCATAGCTA ATTCCTAATC 41936 .......... .......... .......... .......... .......... .......... 412 TGCAAAAATG ATTAATTCTT TATTTTCTAG AGATTCAAAG TTAATTAATT ATAAAACTCT 41996 .......... .......... .......... .......... .......... .......... 412 CCCAATGAAT TTAGAAAACA GGGAATGTTT TTTGGTTCGT AGGCAAGAAA GTTTTTGGAA 42056 .......... .......... .......... .......... .......... .......... 412 TTAAACACAA CAAAAATAAT CCTCATATCC TATTTTTAAC TAATACTTTA ATGTGTCTAG 42116 .......... .......... .......... .......... .......... .......... 412 ATTTTTATTA ATATGTCTGC TTTATATTAA AATTTCATTT TTTTAAAAAA TAATAGGAAA 42176 .......... .......... .......... .......... .......... .......... 412 ATTCTCAGAC CGTCCATAAA GAAAAATCAA AATTAAATAG TTTCTTCTAT TCAAAATTAA 42236 .......... .......... .......... .......... .......... .......... 412 GATGAGTTGT CACCATACTT TTAGAATTTT TGATTTTTTT ATGCAAGAAT AAGACTTACG 42296 .......... .......... .......... .......... .......... .......... 412 AGAACAAATG GTAATCAAAA TAAGATAGGA AAAAGGGTCA AATTTCCTTT TTTTTTCGCC 42356 .......... .......... .......... .......... .......... .......... 412 TAACTTATTT TATTAACTAA TTCATATTTA GTTGTGTCTA AAACAGGTTT AACTGATAAA 42416 .......... .......... .......... .......... .......... .......... 412 GGTTAAATAA AAAAAAATGT TACTACTGTG TTGATTTATC AATTTTGGGT TATTGAATTA 42476 .......... .......... .......... .......... .......... .......... 412 ACCGTCTTAG AATATTAGTT CAGCTTCCAA TTTTAAAATT TTAGTTAATG ATTAAATCAA 42536 .......... .......... .......... .......... .......... .......... 412 TAACCTAATA AAATTATATT AAAACTACTT TTTTTTATTT TTATTTCTAT TTATATAATA 42596 .......... .......... .......... .......... .......... .......... 412 ATGACTTTAT TTAAACTTCA AATACAAAAC CTATTTTCTT TTGCATTTTA TAATCAATGT 42656 .......... .......... .......... .......... .......... .......... 412 ATTGATGCTG ATGTGTTTTG TGCACTTGTT AAAGTTGTGT TATTATATTA TTTTAATATT 42716 .......... .......... .......... .......... .......... .......... 412 AATATAATAA ATGAAGCAGT GTTTTTGCTT GTAAATTTCT AGATTTCTAT TTATGAAGTT 42776 .......... .......... .......... .......... .......... .......... 412 CTGACTTAAA CGTATCTAAC GAATAATTAA ATAAAAAATC AAGTATTTAA GGATCGATAG 42836 .......... .......... .......... .......... .......... .......... 412 TTGATTATCT AAATTATTGA TCATTGATTT AGCATGTTTA TAAATAAAAA ATCGATAAAC 42896 .......... .......... .......... .......... .......... .......... 412 TAAACCACAA AATCTAACCA GTAAACATTG AGACCATATC GAATACACCT ACAAGTAATT 42956 .......... .......... .......... .......... .......... .......... 412 CATTAATAAG TTTCAAATTC AATATACAAC AACAAAAAAA AAAGGCAAGA AAATGTTGAA 43016 ||| ||| ||| | || .......... .......... .......AAC AACTTAAACA GAAA...... .......... 429 GTAAAGTAAA TAACGACACA CGATTATTAA AGATATTATT ATTTGTTCAT CAATGATCAA 43076 .......... .......... .......... .......... .......... .......... 429 AATATATAAG TTGAAGGGAG TGTGTATACA TTACACAAAT AAGATATTAT TATCTCACCC 43136 .......... .......... .......... .......... .......... .......... 429 AACATAAATA GTTTAACAAA CCTTTTAAGA TACTTATTGT TTTGGTAATT TTTCATACCA 43196 .......... .......... .......... .......... .......... .......... 429 TATAATTTGT AGCAAAATAT GCTTTATATT GTGGCATTAA TTATGGGCAA AAAACAACCT 43256 .......... .......... .......... .......... .......... .......... 429 TATAATTTGT ACTATCACTA GGGCAAGCAA ATGTGCTAGT AGCATCATCT TGTGGGTAGC 43316 .......... .......... .......... .......... .......... .......... 429 TATAGGCATC AGGGCATCTC TGTTTGAAAA ATTTCGACCA CTCAGTAGGA CTACATGGAC 43376 .......... .......... .......... .......... .......... .......... 429 CTTGGGTGCA ACAATATTGT TGTCCTCCAA ACGTGGTACA AGGATTGTTA CATCCTCCGG 43436 .......... .......... .......... .......... .......... .......... 429 TTACTTTAAG TTGACTAGGG CATTCACCGT TTATATTGGC GGTGCATTGA ATTGAGTGGC 43496 .......... .......... .......... .......... .......... .......... 429 ATTTTCCTCC ACTGGAATTG GTTGTGGCGA AAGTCATCGG TATATTAAAT CCATCGACTA 43556 .......... .......... .......... .......... .......... .......... 429 AAGAAATGTC CCAGAAATCT AGGTTGTTAA ACTGGTTCAA GGCGTATTCG GTCAAGGTGT 43616 .......... .......... .......... .......... .......... .......... 429 TTGGCGGTTT ACCCCACCCG GTACACTGCA AGACTCCACC ACAATCACCA GTCTCACAAG 43676 .......... .......... .......... .......... .......... .......... 429 AACCTCTACC AGCACCGTCA AAGTTGCATT TAGTACGACC CCATATACGT GCCATCTTAG 43736 .......... .......... .......... .......... .......... .......... 429 TGCCCCTCAG TGCATTGATG GTCCAAGTCT GGCCTTGATT GAGACGTTGA AAAATCTTTT 43796 .......... .......... .......... .......... .......... .......... 429 TTTTTTCATG TTTCTTGTTT ATTTTAAATT TTATATATTT GTTTGTTTGT TTTTTTCTCT 43856 .......... .......... .......... .......... .......... .......... 429 GAAAGAACGT TTCTCTCTTC TTCTTTTTTT TATTATTTTA TTTTATCATT ATTTTTAGTA 43916 .......... .......... .......... .......... .......... .......... 429 TATTATTATT TTATAGTTTT GTCTTCTTCT TTTCTTTTTT TTTTTCCAAT TATTTTGTAC 43976 .......... .......... .......... .......... .......... .......... 429 TAATTTTGTT ATTCTTTTAT CGTTTTTTTT AATTGTGTTG TTATTATTTG TTTTGAAACA 44036 | ||| |||||||||| .......... .......... .......... .......... .....AATTG TTTTGAAACA 444 TTTTAAGGGT TCGGGATTCC TATTAGTATC TTAGGAAGGT GTAAGGCACC CAAAACACTC 44096 |||||||||| || |||||| |||||||||| ||| |||||| |||||||||| || |||||| TTTTAAGGGT TCAAGATTCC TATTAGTATC TTAAGAAGGT GTAAGGCACC TAAGACACTC 504 CGTTAACTTA CGGTTTTCCA ATGATTAAC- TATTTGATTA TTTTTATTTT TAACCTTTGC 44155 |||||| || | ||||||| | ||||||| ||||||| || |||| |||| || |||| CGTTAA-ATA CAGTTTTCCG ACGATTAACT TATTTGACTA -TTTTGTTTT AAAGACTTGC 562 AAATTTATTT GAACTTTTAA CATGACTTAC TTAGCCAAAC TTAGCCAATT TTGAAATATT 44215 || | ||| |||||| | | | || || ||| |||| || || | |||||| ||| GAA--T-TTT GAACTTCTTA -A-GA--TAT CTAGGAAAAC TT-TATAAAT TTGAAACATT 614 TATTGTTTAT CTTGCCAGTT TACGAAACCA TTTCAAAGTT AAGCTTACTC AAGGTTTTAT 44275 ||||| | | || || | | || | || || || || ||| || | ||| || TATTG--T-T -TT--AAGAT TCCGTTAACA -TT--AA--- AA-CTT-TTC GAACTTTAAT 660 CTAAACAAGC CTTACGAATT TGAAACAATT TATCATTTAG AAGTTAGTTT TAAAAATTTT 44335 | | | ||| | |||| ||| || || ||| | | || ||| | | ||| -TCTAAGTGA CTTTCAAATT CGAACGCCTT TAAAGTTTCG -A-TT--TTT T---AGTTTC 712 TAGGTTTGAT AAAATAACAG GCGTTCGATG AGGGTTTGGA GTTTCCTAAT CCTAAGCTTA 44395 | ||||||| ||| || || ||||| |||| ||||||||| | | ||||| |||||||| | GA-GTTTGAT AAAGCAAAAG GCGTTTGATG -GGGTTTGGA TTCTTCTAAT CCTAAGCTAA 770 CGGCATTGAA AACAAAATAA GATAAGCAAA 44425 || |||| || ||||||| | | | | |||| CGACATTTAA AACAAAA-AC G-TCAACAAA 798 hqPGS_C08HBa0235H18.1+_SGN-U332003- (44022 44425) ******************************************************************************** EST sequence 43 -strand 1129 n (File: SGN-U333462-) 1 NGCGCCCCTG TGGGATATTT NTTATAAAAA AATCCCCCGT GGGGGGGGGT TTTCGCCCCA 61 CCCCTCTATT TTATTGGAGG AGGGGGGGAA TATTTTTTGT GAGAAAATTT CTTTCCCCGG 121 GGGGGGGGGG GGGGCCTTTG TGGAAAAAAA TCCCCGGGAA AGGGGGGGCC TTTTTTTTGG 181 GGTTTTTGGG CCCTTTTTTG GGGCCCCTTT TTGTTAACAA ATTTTTTTTT CTCCGGGGTT 241 TTTCCCCCGA TTTTTTGGGA AAAAACCGAT TTCCCCCCCT TTGGGGGAGA TGAAAACCCC 301 TTCCCCCACA CCGAAATTTC CCGGGGCCCC GGGTTTTTTT TACGGGAAAA GGGAAAAGGG 361 CCCAAAAAGC AAAACCCCTT TCCCCCGGGG TTGGGGGGTT TTTTTAAAAA AAGGGCCCCC 421 CAAGTTTTCC TCTTGGAAAA CGGGCCAGGG GGGCAACCCA AATAAAGGGG GGTGGGTCCC 481 CCTTTAGGGC CCCCCGGGTT TTCCCTTTTA TTTTTCGGGT TTATATTTTT GGGGAAATTG 541 GGGGGGGAAA AAATTTTCCC CCGGGAAAAA CTTTTGCCCC GTTTTTCCCC AAGTTTAAAA 601 TAACCCCCCC TAAAGGGGAA AAAAAGGGGG GGTCCCCCCG GGGGGGGGGC CCTTTTAAAA 661 AAAGGGGTCC CCCGGGGTGC AGGAATTTTG CCCGGGGGGA AAAATTTCGG GGTTTTTTTT 721 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTAAA 781 GATATTTCTT TATTTTCCTT TTATTTATCA CAAACTAAGG AACTACATAG TACTTCCATA 841 ATATCATTAT ATATATGATG AATAAAAACA TCATATTTTT CCTTGACTTA GTAATTAATC 901 CTCCTAGCTA GGAGAATAAC ATAGCCTTAT TCAAATTAGG ACCCCAAGAT GAGGATAGAA 961 ATAGGCTTTA ATGGATGCTC CTGACCCATG TACACTTAAA CATATCTTAG GGTTTTGTAA 1021 CTTCTGTTTG GTTGAGTGAT AATGAGGTAA AGTTTTCAAT TGGAATTTCA GGTCTTCTGA 1081 TAAAAAAAAA AAAAAAAACT CAGGGGGCCC GCATTTTTCC TTCACTTNN Predicted gene structure (within gDNA segment 42234 to 53356): Exon 1 45670 45726 ( 57 n); cDNA 720 776 ( 57 n); score: 0.754 Intron 1 45727 50685 (4959 n); Pd: 0.990 (s: 0.72), Pa: 0.000 (s: 0.93) Exon 2 50686 50873 ( 188 n); cDNA 777 966 ( 190 n); score: 0.899 PPA cDNA 1080 1098 MATCH C08HBa0235H18.1+ SGN-U333462- 0.865 245 0.217 C PGS_C08HBa0235H18.1+_SGN-U333462- (45670 45726,50686 50873) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTA ATTTTTTTTT TAAATTTAAT TTTCTATTAT TATTATTTAT TTATTTTATA 45729 ||||||||| ||||||||| | ||| | ||| | || | | || ||| | || |||| TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTT... 776 TCCTTATCTC AACCCCAATT CCCTCAACAA TATTTCAAAC TAAATCCTAA TCCAACTCTA 45789 .......... .......... .......... .......... .......... .......... 776 TTACTATCCA TTTAATTAGC ATCAAACTCT CTCAGTTGAG AAGAAAACAG AGAATACAGA 45849 .......... .......... .......... .......... .......... .......... 776 CAAAGAAGAG ACACAGACAC ACAGATACAG AGAGAAATAT AGGGGAAAAA AACGAGTTAT 45909 .......... .......... .......... .......... .......... .......... 776 TTCTTTTGAG AATTAGGCTA GAGTCAGAAA TTTGGAAATT TGATCGTGAT TCCGAATTTG 45969 .......... .......... .......... .......... .......... .......... 776 TGGATACAGC TCGCTTTTTG TGGTATCAAT TTTCGCAGCG AGCTAACTAT AAATTCTCGC 46029 .......... .......... .......... .......... .......... .......... 776 GTGATTTAAA TAATACTACT TCTATGAAAA ATTGATTTTA ATAGCAATCA CATGTATTAT 46089 .......... .......... .......... .......... .......... .......... 776 ATTATTGTTA CGTTATTACT ATTATTATGT TTTTTTTAGA TAGATTTTGC AATTTATGTT 46149 .......... .......... .......... .......... .......... .......... 776 GCTTCATGAT ATTGAGTTGT TGAATTTAAA TAGATTAATA TATATTTTCG TCTATTTTCA 46209 .......... .......... .......... .......... .......... .......... 776 CTTTAGAAGA TTTTTGTTGA ATTAATTGTA TACTTGTTAG ATTAGGATAT AAAAATAATA 46269 .......... .......... .......... .......... .......... .......... 776 ACTAATAAAT AATTTTTTTT CAAAAAGAAA AACTAATCTA AGTAGAATTG TAATTAAAAG 46329 .......... .......... .......... .......... .......... .......... 776 GTAAATAAAT TTCATTTAGA GATTAATATT ATAAACTAAT AATAATAATA AAAATAATAA 46389 .......... .......... .......... .......... .......... .......... 776 TAATAATAAT AACAGAAGTA AAAATTGAGA AATGATATAA AGAGAAAAGA GATTTTAAAA 46449 .......... .......... .......... .......... .......... .......... 776 AGAAAAAGAA AAAAAAAGGG GCATGAAAAT ATAATAATAA AAAAAACATA ACAAAATTTT 46509 .......... .......... .......... .......... .......... .......... 776 TTAACAAAAA CAAAAAAAAA AGAACGTAAA TTAAAAAAAA ATACAAAAAC GTAAAAAATA 46569 .......... .......... .......... .......... .......... .......... 776 AAAAGGGAGA AGTAAGAAAT AAAAAATAGA AATTTAAAAT TAATAAAATA AAACGTTAAA 46629 .......... .......... .......... .......... .......... .......... 776 AAAAAACAAA TAATAACAAC ACAATTAAAA AAAACGATAA AAGAATAACA AAATTAGTAC 46689 .......... .......... .......... .......... .......... .......... 776 AAAATAATTG GAAAAAAAAA AGAAAAGAAG AAGACAAAAC TATAAAATAA TAATATACTA 46749 .......... .......... .......... .......... .......... .......... 776 AAAATAATGA TAAAATAAAA TAATAAAAAA AAGAAGAAGA GAGAAACGTT CTTTCAGAGA 46809 .......... .......... .......... .......... .......... .......... 776 AAAAAAAAAC AAACAAATAT ATAAAATTTA AAATAAACAA GAAACATGAA AAAAAAAAGA 46869 .......... .......... .......... .......... .......... .......... 776 TTTTTCAACG TCTCGATCAA GGCCAGACTT GGACCATCAA TGCACTGAGG GGCACTAAGA 46929 .......... .......... .......... .......... .......... .......... 776 TGGCACGTAT ATGGGGTCGT ACTAAATGCA ACTTTGACGG TGCTGGTAGA GGTTCTTGTG 46989 .......... .......... .......... .......... .......... .......... 776 AGACTGGTGA TTGTGGTGGA GTCTTGCAGT GTACCGGGTG GGGTAAACCG CCAAACACCT 47049 .......... .......... .......... .......... .......... .......... 776 TGGCCGAATA CGCCTTGAAC CAGTTTAACA ACCTAGATTT CTGGGACATT TCTTTAGTCG 47109 .......... .......... .......... .......... .......... .......... 776 ATGGATTTAA TCTGCAAATT AGAAATTCGG GTAAGGAATT CTGTTGACCG AAGGGAAGGT 47169 .......... .......... .......... .......... .......... .......... 776 ATTAGGCACC CCTCGAATCC CGTGGTTCTA GCACGGTCGC TTTATTAACT TTAATATGAC 47229 .......... .......... .......... .......... .......... .......... 776 CTGACTTAAT TTTGGATATT ATATTTTTTA AACTAATTAT AAAATTGTTA TTTATCCTCA 47289 .......... .......... .......... .......... .......... .......... 776 AATTTATTTT AAACTTATTT CAAACTGGCT TATTTATTTT AAAGGGTGTT TATTTTTATT 47349 .......... .......... .......... .......... .......... .......... 776 TTTATTTTTG TGTAATTTTA AAATTGAACA TCCGTATATA TTTTTTTTGC TTATATTTGT 47409 .......... .......... .......... .......... .......... .......... 776 ATGTTTTTAA TTTTTAATGT TATAATAGGT AGAATATATA TAGATATCTA ATTTCTAAGA 47469 .......... .......... .......... .......... .......... .......... 776 ATTAGAGTTT GTGTAAAAAG GACATATTTA GAGTTCAAGT TAATTTAGGA TTACATATTT 47529 .......... .......... .......... .......... .......... .......... 776 TAGATTTTAT CGAGACTCAA TACAGATACC AGATATTAAT TTCTACTGCA GGGTCTATTT 47589 .......... .......... .......... .......... .......... .......... 776 GGGAGTGGCG CTTCTAACAT GATTTTTTTC ATATCCAAAG CTCGAATTCG AGATTTCTGA 47649 .......... .......... .......... .......... .......... .......... 776 TTAAGGTAAA GCATTCTCAC TAGTGCACCA CAACTCATGT TGGTCATATA AAATTTTTTA 47709 .......... .......... .......... .......... .......... .......... 776 ATTTTTGTGA TAATATTATT TTCTTCTAAA AAGTCTCACT CAATTAAGAA TATTCTTAAC 47769 .......... .......... .......... .......... .......... .......... 776 ACTATATTTA GCTTCTTCTA TTTTTCAATT ATATATTAAT ATTTATTTGC ACATATTAAA 47829 .......... .......... .......... .......... .......... .......... 776 TTCATAATTT AAATTGCAAT TGACCGCATG CAAATCAAAG TCTTCGTCAA ATACGACGAG 47889 .......... .......... .......... .......... .......... .......... 776 TCGTACACAT GCCTTAAAAT TTGAGGGGCT TATTTTTTTA GCAATAATAT ACTTATAAGT 47949 .......... .......... .......... .......... .......... .......... 776 AATTTCAAAA GTAAGTATCA TCTATTTCAA TTTTTAGTTT AACAGTATAA GATTTAAATG 48009 .......... .......... .......... .......... .......... .......... 776 ATTTTTTTAT TTAATTTCAA TTATCATATC AAGTCAAAAA ATAAGATAAA TAAATGGAAA 48069 .......... .......... .......... .......... .......... .......... 776 ATTGAAAGTA CTATTTATTG AATAAAAATA AACTATTTCA TGTGAAAGAA AAAAAATAAC 48129 .......... .......... .......... .......... .......... .......... 776 TTTCCATCAC TTTTTAAGAA ATATATTAGT AGCAACTTTG TATTCTAAAA AAAAATATAG 48189 .......... .......... .......... .......... .......... .......... 776 AAGAATGGAC TTTCTTTAAA TTTTAAATAG TACTTATTTG AATTATAAAA TAATCTCAAT 48249 .......... .......... .......... .......... .......... .......... 776 TAATGTTCTA TTTTTTTTCC AAGAGATATA TTATGGTTTA AAAATTAATC CATGATGTGG 48309 .......... .......... .......... .......... .......... .......... 776 AAAAATGATC AGGAAATTTT CCCACAAACC ACTATATAAC TTCTTCTTTT CTGTACTTTT 48369 .......... .......... .......... .......... .......... .......... 776 GAATTCGATT AAATTAAAAA TTTTGTTAAA AAATTCAAAT TGAAGATATA ACTTTCAACT 48429 .......... .......... .......... .......... .......... .......... 776 TTAATGAAAA TTTTAGATCA ACATTTAAAT TTGAGATTAC TGGAAAAAAA ATTGGCATGT 48489 .......... .......... .......... .......... .......... .......... 776 ATTACTTATG TAATAATAGT TATTAACTAT TTGTTTTAGA ATTATCAAAA TTCCAGTATA 48549 .......... .......... .......... .......... .......... .......... 776 ATTAGGTGAT TCTTTTTTGG GACATTGTGG GGTTTCAACT TTCAATTTAC AAGACTAGCA 48609 .......... .......... .......... .......... .......... .......... 776 AGACTTGCTG TTGATAGGTT AGAAAAGTCT TTGTAAGAAA TGAATTGTAT TATTTTTCAA 48669 .......... .......... .......... .......... .......... .......... 776 AAAAATTATA ATATAAAAGA AGATATAAAT ACATGTGTAA TGATATATTA TCTAATTAAA 48729 .......... .......... .......... .......... .......... .......... 776 ATAATAAGTA TTTTAAAGTT AAAGTATATT ACTAAATATA AAAAAGATAT TTATCATTTA 48789 .......... .......... .......... .......... .......... .......... 776 TTCAAAACTG ATTAAAGAAA ATCACATAAA TTAAAATGAA AGAAATACAG CCTTATTTTC 48849 .......... .......... .......... .......... .......... .......... 776 TCAAATTAGT GGAAATAGTT AAAATTTGAA TTTGAAATAA TGACATTGCA AACCCGTATT 48909 .......... .......... .......... .......... .......... .......... 776 GTATATATAA TATATCAAAA AGCTATATAC CTATAGGGAA ATATAATTAA TATATAAATT 48969 .......... .......... .......... .......... .......... .......... 776 TTTCTCGTCA AGTAAAAAAG TGTTAATACA TATCTTAATA TATAGATATT CATTCAAATT 49029 .......... .......... .......... .......... .......... .......... 776 CAAATGTCTT AATTTTAAGG AAAGTATTAG AAACAATTAA ATGCTTACAA CTAAACGAAA 49089 .......... .......... .......... .......... .......... .......... 776 CAAAAAATTC AATCTGTCGG TGGCATTTAC TGACACTAAA AGGGAATAAT TAGAAATGTT 49149 .......... .......... .......... .......... .......... .......... 776 CATTTTTTAA AAAATAAAAT AAAAATAGAA ATCTCCTATA ACCAAAAACG ACATTTTCTA 49209 .......... .......... .......... .......... .......... .......... 776 TTAATTTACC CTTTATATAT TTTTTATCAC TTTTAAAACA CAATCCTAAT TTTTAGGGAA 49269 .......... .......... .......... .......... .......... .......... 776 AAAATAAATT AATTCTTCAT ATCTTGATTT TTAAATTGAC TAGGATTTTA AAATGAACTT 49329 .......... .......... .......... .......... .......... .......... 776 TGTCTTTAAT AATGTTGATA ATTAATATGA GACAAAGTCG GAGAATACTT AATGGCTTTA 49389 .......... .......... .......... .......... .......... .......... 776 GTCATGTTGC TCAGAAAGAA ATGTTTAATT AGTTATATAC TACGGAAAAG GGTTAAAATA 49449 .......... .......... .......... .......... .......... .......... 776 TTCTTAAACT ATCAGAAATA GATTTACCCT TAAATTATAT TTTGATTTAA AACTATTTTT 49509 .......... .......... .......... .......... .......... .......... 776 CTATCAAATT ATTGGGTCAA AAATACCCTT CTTATTTTTT TTACCCTTTT CCGTATATAT 49569 .......... .......... .......... .......... .......... .......... 776 TTTTAAAAAA GACATTTTGA TGAAAATTTT TAGAAATTGG AGCAAAAAGC ATTAGATGAT 49629 .......... .......... .......... .......... .......... .......... 776 CATAATAATA CATATTGCAA ATATTTGACT GCAAAGCTAA GTCTTTGTCA ATAATAAATA 49689 .......... .......... .......... .......... .......... .......... 776 TGAAGCTATT GCAATTTGTG GTCCTCATGC ATTGGAAATA GTATGCATAG CCTTTTAATT 49749 .......... .......... .......... .......... .......... .......... 776 AAGATGTACA TTGAGTTACA TAGCTGGAAA GTCGTCGTTT ATTAAGAGTG TTTTATTTAT 49809 .......... .......... .......... .......... .......... .......... 776 TAATGTGAAT TTTTTAAATA CAAATTTATA TTTAATCGAG ATTTAATATG AATAATTAAA 49869 .......... .......... .......... .......... .......... .......... 776 CACCAAAATT TAAATTTAAG AAGGTACAAT AATTTACCCC TCCTTTTGTT TTTAACTAGC 49929 .......... .......... .......... .......... .......... .......... 776 TAGATCGAAT TGTATATATA GGTAATCATA ATATTCAAAT TGTGCAATAT TTGACTGTGT 49989 .......... .......... .......... .......... .......... .......... 776 ATAGCTAAGT GGTCAATTTA TAGTTGGTCG TCATCACTAG AACTTTATAG CCTTTTAACT 50049 .......... .......... .......... .......... .......... .......... 776 CTTCTTTGAA AAATTAAATT GATTAGAATA CTTTAAAGAA ATTAATTTAA TTTCATGTGA 50109 .......... .......... .......... .......... .......... .......... 776 AAAAGTAATT TTAAGCCACT TAATTAATTT CATGTACTTA ATAATGGGAA CGAGGAATAT 50169 .......... .......... .......... .......... .......... .......... 776 AAAATTATAT TGGGTGAAGC TTCCACAAAG AGAATCCTTA ATATTATAAT ATTATATAAT 50229 .......... .......... .......... .......... .......... .......... 776 ACTTTTTGTT CTGAATTAAA TCTCGATGAT TTTTAAAATA AAATCTAGCT CGCTTAATTA 50289 .......... .......... .......... .......... .......... .......... 776 AGAGTGTTCA TAATGTTAAT CGTAACTTCT CTTACTTTTC AATTATATGG CAAATGTGAA 50349 .......... .......... .......... .......... .......... .......... 776 GTTTTGCACA ACTAGAAAGC AATCTCCTTC TCGAATTAAG TTTCATGTAT GCATGACTTA 50409 .......... .......... .......... .......... .......... .......... 776 CCACTTTATT CCTCGAATAA TTTTACATAG CTCATCACTA AAATCGTCGA TTCATGTGTT 50469 .......... .......... .......... .......... .......... .......... 776 GAAATGGATA TTAATTATCT GTCACGTATA GTTTTCAAAT ATTTATGATC ATCGAAGTCC 50529 .......... .......... .......... .......... .......... .......... 776 ATATATAATG CAAGCTCCTA TTATTATTAA TTTTTGTCTA GCTTTTCATA GAGGGTGAAA 50589 .......... .......... .......... .......... .......... .......... 776 GACGGATCAG ACTCAATACC ATGCATCTTC ATACTCATCT CGTCAAAAGC TATTAACTTA 50649 .......... .......... .......... .......... .......... .......... 776 AACCTTGAGG GAAACTTAAA AGTGACCAAA TCATCATAAA GATATT-CTT TATTTTCCTT 50708 |||| |||||| ||| |||||||||| .......... .......... .......... ......TAAA GATATTTCTT TATTTTCCTT 800 TTATTCATCA CAAACTAAGG AACTACATAG TACTTCCATA TTATCACTAT ATATATGATG 50768 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| TTATTTATCA CAAACTAAGG AACTACATAG TACTTCCATA ATATCATTAT ATATATGATG 860 AATAAAAACA TCATATTTTT CCTTGACTTA GTAATTAATC CTCCTAGCAA GGAGAATAAC 50828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AATAAAAACA TCATATTTTT CCTTGACTTA GTAATTAATC CTCCTAGCTA GGAGAATAAC 920 ATAGCCTTAT TCAAATTATT AATACAAAAG GA-TATATAG ATAGGC 50873 |||||||||| |||||||| | ||| | || ||| | |||||| ATAGCCTTAT TCAAATTAGG ACCCCAAGAT GAGGATAGAA ATAGGC 966 hqPGS_C08HBa0235H18.1+_SGN-U333462- (45670 45726,50686 50873) ******************************************************************************** EST sequence 4 +strand 1014 n (File: SGN-U312654+) 1 CGGCCAAATC GGCCGAATTG ATATATACAT TTCAACAAAC ATGGGCTACT TGACATCTTC 61 TTTTGTTCTC TTCTTCCTTC TTTGTGTGAC TTATACTTAT GCTGCCACTA TTGAGGTACG 121 CAACAACTGT CCATACACCG TTTGGGCGGC ATCGACTCCG ATAGGCGGTG GTCGACGTCT 181 CAATCGAGGC CAAACATGGG TCATCAATGC TCCGAGGGGA ACTAAGATGG CACGTATATG 241 GGGTCGTACT GGTTGCAACT TTAATGCTGC AGGCAGAGGT ACATGTCAGA CTGGTGATTG 301 TGGTGGAGTC TTACAGTGTA CCGGATGGGG CAAACCCCCA AACACCCTAG CCGAGTACGC 361 CTTGGACCAG TTTAGCAACT TAGATTTTTG GGACATTTCT TTAGTCGATG GATTTAATAT 421 TCCAATGACT TTTGCCCCAA CAAAACCTAG TGGAGGAAAA TGTCACGCAA TTCATTGCAC 481 GGCCAATATA AATGGTGAAT GTCCTCGCGC CCTTAAGGTA CCTGGAGGAT GTAACAACCC 541 TTGTACCACG TTTGGAGGAC AACAATATTG TTGCACCCAA GGTCCATGTG GCCCTACAGA 601 GTTGTCCAAA TTTTTCAAGA AAAGATGTCC CGATGCTTAT AGCTACCCAC AAGACGATCC 661 TACAAGCACA TTTACTTGCC CTGGTGGTAG TACAAACTAT AGGGTTGTCT TTTGTCCTAA 721 TGGTGTTGCT GATCCAAATT TCCCCTTGGA GATGCCTGCA AGTACTGATG AAGTGGCCAA 781 GTGAATTTGA GTTTCTTCAT TTTAAATCGC CTCAATTAGT CAACTGATCT CTACCGTAAT 841 GAAAAATCTT AATAGCTCAG TTTTTTAAAT ATTCACTTTT ACTTTATTGA TAAGAGTTCG 901 TAACAAACTT AAAGACCGGA ATAAGAGTTA CATCTCATGT GTACTTTTGT CTTAGATGTA 961 TAAAACAACA GTGCATTTGA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 43523 to 53690): Exon 1 44356 44362 ( 7 n); cDNA 165 171 ( 7 n); score: 0.714 Intron 1 44363 46873 (2511 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80) Exon 2 46874 47131 ( 258 n); cDNA 172 429 ( 258 n); score: 0.857 Intron 2 47132 50350 (3219 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0) Exon 3 50351 50370 ( 20 n); cDNA 430 449 ( 20 n); score: 0.600 Intron 3 50371 52483 (2113 n); Pd: 0.900 (s: 0), Pa: 0.471 (s: 0) Exon 4 52484 52495 ( 12 n); cDNA 450 461 ( 12 n); score: 0.917 PPA cDNA 980 1014 MATCH C08HBa0235H18.1+ SGN-U312654+ 0.857 297 0.293 C PGS_C08HBa0235H18.1+_SGN-U312654+ (44356 44362,46874 47131,50351 50370,52484 52495) Alignment (genomic DNA sequence = upper lines): GCGTTCGATG AGGGTTTGGA GTTTCCTAAT CCTAAGCTTA CGGCATTGAA AACAAAATAA 44415 ||| | | GCGGTGG... .......... .......... .......... .......... .......... 171 GATAAGCAAA TAGTAAAGAG AAGGATAGAG AGAGAGAGAT TTGGGTCCAA CTCCGGGTTC 44475 .......... .......... .......... .......... .......... .......... 171 TGTTATCCTT GACCGAATGT TGGACCCACC TGCCTTTGGG TTTTTTAGCC CATTTCTGTA 44535 .......... .......... .......... .......... .......... .......... 171 CCTGTCCTAA TCTAAACATA CAAACATAAT ATAGAAAACA AAAAAACGAT ATTTTTGTGA 44595 .......... .......... .......... .......... .......... .......... 171 AGTTAACTTT TTAATAAATG ATAAATATAA TAAATTTCAA AAATCAAATA TATTTGGACG 44655 .......... .......... .......... .......... .......... .......... 171 ACTACTTAAA TGTTTCAGTT TATTTTTTGA GCCAAATTTT TATCAGTGTG AATTGAATTG 44715 .......... .......... .......... .......... .......... .......... 171 ATTCAAAATT TGAAAAAGAA AAATATTTTC CACCTCAATT TTTCTATATA TTTTGTGTAA 44775 .......... .......... .......... .......... .......... .......... 171 AAATGATTTT TTTTTCCCGA AGTTCTTAAA GCAAACTTGA CAATATCACA AAATATTTAA 44835 .......... .......... .......... .......... .......... .......... 171 ATTTCATTAC TTCAAAATGA TCTAAATATT CCTGCTGAAT ATGATGTTAG TTTATAATGA 44895 .......... .......... .......... .......... .......... .......... 171 AATTAGACGA GAAATTCCTG AATATGACTG CCCACGTGAA TTTTAGTTTT TCTTTGACAA 44955 .......... .......... .......... .......... .......... .......... 171 AGAAAAACAT GGCAACTACT TATTAATTTT TTTAAATTGA TCAAATATTT ATTTTCAAAA 45015 .......... .......... .......... .......... .......... .......... 171 ATAATTAATT ATTAAGAGTA TAATTAAAAA ATTATTATAA TTTATACATT AATTTTACAA 45075 .......... .......... .......... .......... .......... .......... 171 AATAACAAAT ATTACGAACT AACTATTTTA TAATAAAAAT GACATATAAA AAGATACGGA 45135 .......... .......... .......... .......... .......... .......... 171 ATAAAAATAA TCACATATAT CAATAATATT ACATCGGAAT AATGATGAGG AAAATTTTCC 45195 .......... .......... .......... .......... .......... .......... 171 ACGAGTCACT ATTCCACGTC CGCATTTAAT TCTTCATGAA TATTTTTTGG TCTTTTTGGG 45255 .......... .......... .......... .......... .......... .......... 171 AACCTTCTCC TAACTTTACT CGTATCGAAT TTAACTAAAT CTAAATTCTT ATTAAAAAAT 45315 .......... .......... .......... .......... .......... .......... 171 TCTATATTAA AAATATAATA TTTGTGATTT AAAATTGTGA ACATCTAATT TTTTATCAAA 45375 .......... .......... .......... .......... .......... .......... 171 ATATAAAGAA TCAAACACCA ATTTTTTTAA AAAAAGGTTA TATTTAAAAT AAAATAAAAT 45435 .......... .......... .......... .......... .......... .......... 171 AATAATAATA AATTGTAAAT TAATAAAACT AATAAAATCA ATTATAGTTT ATTAATAAAA 45495 .......... .......... .......... .......... .......... .......... 171 AAAGAATTGA TAAATAGAAG TTGGGAATTT AAGTTATTTG TTAATTATCT AGTTTAAAAA 45555 .......... .......... .......... .......... .......... .......... 171 TAATTTAAGT TATTTGTTCA CCTTATCCTA ATTATTCCCA ACTTTCTAAC TTATTTTACT 45615 .......... .......... .......... .......... .......... .......... 171 AAAAAGTTTC ATTCCATTAA TTTTGATTTT TTTTTCTTCT GACGTTCATT TGACTTTTTT 45675 .......... .......... .......... .......... .......... .......... 171 TTTAATTTTT TTTTTAAATT TAATTTTCTA TTATTATTAT TTATTTATTT TATATCCTTA 45735 .......... .......... .......... .......... .......... .......... 171 TCTCAACCCC AATTCCCTCA ACAATATTTC AAACTAAATC CTAATCCAAC TCTATTACTA 45795 .......... .......... .......... .......... .......... .......... 171 TCCATTTAAT TAGCATCAAA CTCTCTCAGT TGAGAAGAAA ACAGAGAATA CAGACAAAGA 45855 .......... .......... .......... .......... .......... .......... 171 AGAGACACAG ACACACAGAT ACAGAGAGAA ATATAGGGGA AAAAAACGAG TTATTTCTTT 45915 .......... .......... .......... .......... .......... .......... 171 TGAGAATTAG GCTAGAGTCA GAAATTTGGA AATTTGATCG TGATTCCGAA TTTGTGGATA 45975 .......... .......... .......... .......... .......... .......... 171 CAGCTCGCTT TTTGTGGTAT CAATTTTCGC AGCGAGCTAA CTATAAATTC TCGCGTGATT 46035 .......... .......... .......... .......... .......... .......... 171 TAAATAATAC TACTTCTATG AAAAATTGAT TTTAATAGCA ATCACATGTA TTATATTATT 46095 .......... .......... .......... .......... .......... .......... 171 GTTACGTTAT TACTATTATT ATGTTTTTTT TAGATAGATT TTGCAATTTA TGTTGCTTCA 46155 .......... .......... .......... .......... .......... .......... 171 TGATATTGAG TTGTTGAATT TAAATAGATT AATATATATT TTCGTCTATT TTCACTTTAG 46215 .......... .......... .......... .......... .......... .......... 171 AAGATTTTTG TTGAATTAAT TGTATACTTG TTAGATTAGG ATATAAAAAT AATAACTAAT 46275 .......... .......... .......... .......... .......... .......... 171 AAATAATTTT TTTTCAAAAA GAAAAACTAA TCTAAGTAGA ATTGTAATTA AAAGGTAAAT 46335 .......... .......... .......... .......... .......... .......... 171 AAATTTCATT TAGAGATTAA TATTATAAAC TAATAATAAT AATAAAAATA ATAATAATAA 46395 .......... .......... .......... .......... .......... .......... 171 TAATAACAGA AGTAAAAATT GAGAAATGAT ATAAAGAGAA AAGAGATTTT AAAAAGAAAA 46455 .......... .......... .......... .......... .......... .......... 171 AGAAAAAAAA AGGGGCATGA AAATATAATA ATAAAAAAAA CATAACAAAA TTTTTTAACA 46515 .......... .......... .......... .......... .......... .......... 171 AAAACAAAAA AAAAAGAACG TAAATTAAAA AAAAATACAA AAACGTAAAA AATAAAAAGG 46575 .......... .......... .......... .......... .......... .......... 171 GAGAAGTAAG AAATAAAAAA TAGAAATTTA AAATTAATAA AATAAAACGT TAAAAAAAAA 46635 .......... .......... .......... .......... .......... .......... 171 CAAATAATAA CAACACAATT AAAAAAAACG ATAAAAGAAT AACAAAATTA GTACAAAATA 46695 .......... .......... .......... .......... .......... .......... 171 ATTGGAAAAA AAAAAGAAAA GAAGAAGACA AAACTATAAA ATAATAATAT ACTAAAAATA 46755 .......... .......... .......... .......... .......... .......... 171 ATGATAAAAT AAAATAATAA AAAAAAGAAG AAGAGAGAAA CGTTCTTTCA GAGAAAAAAA 46815 .......... .......... .......... .......... .......... .......... 171 AAACAAACAA ATATATAAAA TTTAAAATAA ACAAGAAACA TGAAAAAAAA AAGATTTTTC 46875 || .......... .......... .......... .......... .......... ........TC 173 AACGTCTCGA TCAAGGCCAG ACTTGGACCA TCAATGCACT GAGGGGCACT AAGATGGCAC 46935 ||||||| | || |||||| || ||| || ||||||| | |||||| ||| |||||||||| GACGTCTCAA TCGAGGCCAA ACATGGGTCA TCAATGCTCC GAGGGGAACT AAGATGGCAC 233 GTATATGGGG TCGTACTAAA TGCAACTTTG ACGGTGCTGG TAGAGGTTCT TGTGAGACTG 46995 |||||||||| ||||||| ||||||||| | | ||| || |||||| | ||| |||||| GTATATGGGG TCGTACTGGT TGCAACTTTA ATGCTGCAGG CAGAGGTACA TGTCAGACTG 293 GTGATTGTGG TGGAGTCTTG CAGTGTACCG GGTGGGGTAA ACCGCCAAAC ACCTTGGCCG 47055 |||||||||| ||||||||| |||||||||| | ||||| || ||| |||||| ||| | |||| GTGATTGTGG TGGAGTCTTA CAGTGTACCG GATGGGGCAA ACCCCCAAAC ACCCTAGCCG 353 AATACGCCTT GAACCAGTTT AACAACCTAG ATTTCTGGGA CATTTCTTTA GTCGATGGAT 47115 | |||||||| | |||||||| | |||| ||| |||| ||||| |||||||||| |||||||||| AGTACGCCTT GGACCAGTTT AGCAACTTAG ATTTTTGGGA CATTTCTTTA GTCGATGGAT 413 TTAATCTGCA AATTAGAAAT TCGGGTAAGG AATTCTGTTG ACCGAAGGGA AGGTATTAGG 47175 ||||| | | ||| | TTAATATTCC AATGAC.... .......... .......... .......... .......... 429 CACCCCTCGA ATCCCGTGGT TCTAGCACGG TCGCTTTATT AACTTTAATA TGACCTGACT 47235 .......... .......... .......... .......... .......... .......... 429 TAATTTTGGA TATTATATTT TTTAAACTAA TTATAAAATT GTTATTTATC CTCAAATTTA 47295 .......... .......... .......... .......... .......... .......... 429 TTTTAAACTT ATTTCAAACT GGCTTATTTA TTTTAAAGGG TGTTTATTTT TATTTTTATT 47355 .......... .......... .......... .......... .......... .......... 429 TTTGTGTAAT TTTAAAATTG AACATCCGTA TATATTTTTT TTGCTTATAT TTGTATGTTT 47415 .......... .......... .......... .......... .......... .......... 429 TTAATTTTTA ATGTTATAAT AGGTAGAATA TATATAGATA TCTAATTTCT AAGAATTAGA 47475 .......... .......... .......... .......... .......... .......... 429 GTTTGTGTAA AAAGGACATA TTTAGAGTTC AAGTTAATTT AGGATTACAT ATTTTAGATT 47535 .......... .......... .......... .......... .......... .......... 429 TTATCGAGAC TCAATACAGA TACCAGATAT TAATTTCTAC TGCAGGGTCT ATTTGGGAGT 47595 .......... .......... .......... .......... .......... .......... 429 GGCGCTTCTA ACATGATTTT TTTCATATCC AAAGCTCGAA TTCGAGATTT CTGATTAAGG 47655 .......... .......... .......... .......... .......... .......... 429 TAAAGCATTC TCACTAGTGC ACCACAACTC ATGTTGGTCA TATAAAATTT TTTAATTTTT 47715 .......... .......... .......... .......... .......... .......... 429 GTGATAATAT TATTTTCTTC TAAAAAGTCT CACTCAATTA AGAATATTCT TAACACTATA 47775 .......... .......... .......... .......... .......... .......... 429 TTTAGCTTCT TCTATTTTTC AATTATATAT TAATATTTAT TTGCACATAT TAAATTCATA 47835 .......... .......... .......... .......... .......... .......... 429 ATTTAAATTG CAATTGACCG CATGCAAATC AAAGTCTTCG TCAAATACGA CGAGTCGTAC 47895 .......... .......... .......... .......... .......... .......... 429 ACATGCCTTA AAATTTGAGG GGCTTATTTT TTTAGCAATA ATATACTTAT AAGTAATTTC 47955 .......... .......... .......... .......... .......... .......... 429 AAAAGTAAGT ATCATCTATT TCAATTTTTA GTTTAACAGT ATAAGATTTA AATGATTTTT 48015 .......... .......... .......... .......... .......... .......... 429 TTATTTAATT TCAATTATCA TATCAAGTCA AAAAATAAGA TAAATAAATG GAAAATTGAA 48075 .......... .......... .......... .......... .......... .......... 429 AGTACTATTT ATTGAATAAA AATAAACTAT TTCATGTGAA AGAAAAAAAA TAACTTTCCA 48135 .......... .......... .......... .......... .......... .......... 429 TCACTTTTTA AGAAATATAT TAGTAGCAAC TTTGTATTCT AAAAAAAAAT ATAGAAGAAT 48195 .......... .......... .......... .......... .......... .......... 429 GGACTTTCTT TAAATTTTAA ATAGTACTTA TTTGAATTAT AAAATAATCT CAATTAATGT 48255 .......... .......... .......... .......... .......... .......... 429 TCTATTTTTT TTCCAAGAGA TATATTATGG TTTAAAAATT AATCCATGAT GTGGAAAAAT 48315 .......... .......... .......... .......... .......... .......... 429 GATCAGGAAA TTTTCCCACA AACCACTATA TAACTTCTTC TTTTCTGTAC TTTTGAATTC 48375 .......... .......... .......... .......... .......... .......... 429 GATTAAATTA AAAATTTTGT TAAAAAATTC AAATTGAAGA TATAACTTTC AACTTTAATG 48435 .......... .......... .......... .......... .......... .......... 429 AAAATTTTAG ATCAACATTT AAATTTGAGA TTACTGGAAA AAAAATTGGC ATGTATTACT 48495 .......... .......... .......... .......... .......... .......... 429 TATGTAATAA TAGTTATTAA CTATTTGTTT TAGAATTATC AAAATTCCAG TATAATTAGG 48555 .......... .......... .......... .......... .......... .......... 429 TGATTCTTTT TTGGGACATT GTGGGGTTTC AACTTTCAAT TTACAAGACT AGCAAGACTT 48615 .......... .......... .......... .......... .......... .......... 429 GCTGTTGATA GGTTAGAAAA GTCTTTGTAA GAAATGAATT GTATTATTTT TCAAAAAAAT 48675 .......... .......... .......... .......... .......... .......... 429 TATAATATAA AAGAAGATAT AAATACATGT GTAATGATAT ATTATCTAAT TAAAATAATA 48735 .......... .......... .......... .......... .......... .......... 429 AGTATTTTAA AGTTAAAGTA TATTACTAAA TATAAAAAAG ATATTTATCA TTTATTCAAA 48795 .......... .......... .......... .......... .......... .......... 429 ACTGATTAAA GAAAATCACA TAAATTAAAA TGAAAGAAAT ACAGCCTTAT TTTCTCAAAT 48855 .......... .......... .......... .......... .......... .......... 429 TAGTGGAAAT AGTTAAAATT TGAATTTGAA ATAATGACAT TGCAAACCCG TATTGTATAT 48915 .......... .......... .......... .......... .......... .......... 429 ATAATATATC AAAAAGCTAT ATACCTATAG GGAAATATAA TTAATATATA AATTTTTCTC 48975 .......... .......... .......... .......... .......... .......... 429 GTCAAGTAAA AAAGTGTTAA TACATATCTT AATATATAGA TATTCATTCA AATTCAAATG 49035 .......... .......... .......... .......... .......... .......... 429 TCTTAATTTT AAGGAAAGTA TTAGAAACAA TTAAATGCTT ACAACTAAAC GAAACAAAAA 49095 .......... .......... .......... .......... .......... .......... 429 ATTCAATCTG TCGGTGGCAT TTACTGACAC TAAAAGGGAA TAATTAGAAA TGTTCATTTT 49155 .......... .......... .......... .......... .......... .......... 429 TTAAAAAATA AAATAAAAAT AGAAATCTCC TATAACCAAA AACGACATTT TCTATTAATT 49215 .......... .......... .......... .......... .......... .......... 429 TACCCTTTAT ATATTTTTTA TCACTTTTAA AACACAATCC TAATTTTTAG GGAAAAAATA 49275 .......... .......... .......... .......... .......... .......... 429 AATTAATTCT TCATATCTTG ATTTTTAAAT TGACTAGGAT TTTAAAATGA ACTTTGTCTT 49335 .......... .......... .......... .......... .......... .......... 429 TAATAATGTT GATAATTAAT ATGAGACAAA GTCGGAGAAT ACTTAATGGC TTTAGTCATG 49395 .......... .......... .......... .......... .......... .......... 429 TTGCTCAGAA AGAAATGTTT AATTAGTTAT ATACTACGGA AAAGGGTTAA AATATTCTTA 49455 .......... .......... .......... .......... .......... .......... 429 AACTATCAGA AATAGATTTA CCCTTAAATT ATATTTTGAT TTAAAACTAT TTTTCTATCA 49515 .......... .......... .......... .......... .......... .......... 429 AATTATTGGG TCAAAAATAC CCTTCTTATT TTTTTTACCC TTTTCCGTAT ATATTTTTAA 49575 .......... .......... .......... .......... .......... .......... 429 AAAAGACATT TTGATGAAAA TTTTTAGAAA TTGGAGCAAA AAGCATTAGA TGATCATAAT 49635 .......... .......... .......... .......... .......... .......... 429 AATACATATT GCAAATATTT GACTGCAAAG CTAAGTCTTT GTCAATAATA AATATGAAGC 49695 .......... .......... .......... .......... .......... .......... 429 TATTGCAATT TGTGGTCCTC ATGCATTGGA AATAGTATGC ATAGCCTTTT AATTAAGATG 49755 .......... .......... .......... .......... .......... .......... 429 TACATTGAGT TACATAGCTG GAAAGTCGTC GTTTATTAAG AGTGTTTTAT TTATTAATGT 49815 .......... .......... .......... .......... .......... .......... 429 GAATTTTTTA AATACAAATT TATATTTAAT CGAGATTTAA TATGAATAAT TAAACACCAA 49875 .......... .......... .......... .......... .......... .......... 429 AATTTAAATT TAAGAAGGTA CAATAATTTA CCCCTCCTTT TGTTTTTAAC TAGCTAGATC 49935 .......... .......... .......... .......... .......... .......... 429 GAATTGTATA TATAGGTAAT CATAATATTC AAATTGTGCA ATATTTGACT GTGTATAGCT 49995 .......... .......... .......... .......... .......... .......... 429 AAGTGGTCAA TTTATAGTTG GTCGTCATCA CTAGAACTTT ATAGCCTTTT AACTCTTCTT 50055 .......... .......... .......... .......... .......... .......... 429 TGAAAAATTA AATTGATTAG AATACTTTAA AGAAATTAAT TTAATTTCAT GTGAAAAAGT 50115 .......... .......... .......... .......... .......... .......... 429 AATTTTAAGC CACTTAATTA ATTTCATGTA CTTAATAATG GGAACGAGGA ATATAAAATT 50175 .......... .......... .......... .......... .......... .......... 429 ATATTGGGTG AAGCTTCCAC AAAGAGAATC CTTAATATTA TAATATTATA TAATACTTTT 50235 .......... .......... .......... .......... .......... .......... 429 TGTTCTGAAT TAAATCTCGA TGATTTTTAA AATAAAATCT AGCTCGCTTA ATTAAGAGTG 50295 .......... .......... .......... .......... .......... .......... 429 TTCATAATGT TAATCGTAAC TTCTCTTACT TTTCAATTAT ATGGCAAATG TGAAGTTTTG 50355 ||||| .......... .......... .......... .......... .......... .....TTTTG 434 CACAACTAGA AAGCAATCTC CTTCTCGAAT TAAGTTTCAT GTATGCATGA CTTACCACTT 50415 | | | | | | | CCCCAACAAA ACCTA..... .......... .......... .......... .......... 449 TATTCCTCGA ATAATTTTAC ATAGCTCATC ACTAAAATCG TCGATTCATG TGTTGAAATG 50475 .......... .......... .......... .......... .......... .......... 449 GATATTAATT ATCTGTCACG TATAGTTTTC AAATATTTAT GATCATCGAA GTCCATATAT 50535 .......... .......... .......... .......... .......... .......... 449 AATGCAAGCT CCTATTATTA TTAATTTTTG TCTAGCTTTT CATAGAGGGT GAAAGACGGA 50595 .......... .......... .......... .......... .......... .......... 449 TCAGACTCAA TACCATGCAT CTTCATACTC ATCTCGTCAA AAGCTATTAA CTTAAACCTT 50655 .......... .......... .......... .......... .......... .......... 449 GAGGGAAACT TAAAAGTGAC CAAATCATCA TAAAGATATT CTTTATTTTC CTTTTATTCA 50715 .......... .......... .......... .......... .......... .......... 449 TCACAAACTA AGGAACTACA TAGTACTTCC ATATTATCAC TATATATATG ATGAATAAAA 50775 .......... .......... .......... .......... .......... .......... 449 ACATCATATT TTTCCTTGAC TTAGTAATTA ATCCTCCTAG CAAGGAGAAT AACATAGCCT 50835 .......... .......... .......... .......... .......... .......... 449 TATTCAAATT ATTAATACAA AAGGATATAT AGATAGGCAG ATAGATATTT AAGGACAGAA 50895 .......... .......... .......... .......... .......... .......... 449 TACAACCCTA TAATTAGTAC CAGCAGGGCA AGTGAAAGTA CTAGTTTGAT CATCCTTAGG 50955 .......... .......... .......... .......... .......... .......... 449 GTAACTATAT GCATCAGGAC ACCTCTCCTT AAAAAATCTC GAAAATTTAG TCGGACCACA 51015 .......... .......... .......... .......... .......... .......... 449 GTTACCAGAG TTACAACAAT ATTGATCAGT CTTAAAAACA GTACAAGGGT TGTTACATCC 51075 .......... .......... .......... .......... .......... .......... 449 TCCGGGAGCT TTCAATTCAT TAGGACATTG TTGATTAATT TCCGCTTTAC ACGTTATGCC 51135 .......... .......... .......... .......... .......... .......... 449 ACGGGTGCAC CCATTGGAAG TTGGACTAAA TTCCATAGGA ACATTAAATC CATCGACAAG 51195 .......... .......... .......... .......... .......... .......... 449 AGAAATATCG AAAAAATCTT TATTTGCAAA TTGGTTTAGG GCATATTCAG CTAATGTATT 51255 .......... .......... .......... .......... .......... .......... 449 TGGTGGTACA CCAAAAGATT TACATACAAG AAGACCATTA CAATCTCCAG TTTGGCATTT 51315 .......... .......... .......... .......... .......... .......... 449 TCCCTTACCG GATGCATCGA AATTGCATCC GGTACGGCCC CAAACTCGAG CTTGTTTAGT 51375 .......... .......... .......... .......... .......... .......... 449 CCCCGGAGGG GCGTTTATCG TCCACGTTTG GCCACGATCG AGGCGTTTGC CGCCTCCGGC 51435 .......... .......... .......... .......... .......... .......... 449 TGGGACTCCG GCAGCCCAAA CGGTGTAGGG ACAATTGTTA CGAACTAAAA TTGTGGCTGC 51495 .......... .......... .......... .......... .......... .......... 449 ATTGGCATAG GTGAAAAAAA GGGAAAAGAG AATAAAAATT GAAGTTTTCA TATTTTTATT 51555 .......... .......... .......... .......... .......... .......... 449 TTTTGTGTGA CTACTAATAA ATTGGGATGA GTGATTTTTT ATGAGGGAGT AATAATAATT 51615 .......... .......... .......... .......... .......... .......... 449 AGAAGGGTAT TTATAGGGTA AAAATGGGGC ACCAATATAG TTGGTAAGTA ACTAATTTGT 51675 .......... .......... .......... .......... .......... .......... 449 TTGAAATTTT AGTTTGTGAT AATGTAATGT AATGTTTTGA GTAGACTAGT ACATTATTCT 51735 .......... .......... .......... .......... .......... .......... 449 ATCGAGGGTG CAAGGTGTGG CTACTAGAAG TTGTAGAAAA TGTAGCTAGG GTCTATTATT 51795 .......... .......... .......... .......... .......... .......... 449 CAAGCTTGGA TTTTATTTTT TACTTTTGAA TAATATGTAT ATATATATAT ATTTATTTTT 51855 .......... .......... .......... .......... .......... .......... 449 TTTACGTATC AGAACGAAGT TCGATTAAAT TTAGATACGC GCTTTAAAGT TGTATATTGA 51915 .......... .......... .......... .......... .......... .......... 449 GTATAAAACG TTTCCTAACA AAAATAACTA TGTACTTAAG AGACTCGAAC TCGAAACATC 51975 .......... .......... .......... .......... .......... .......... 449 TGATTAAGAA TTAATGAAAT AGAATACTTA TCACTTCACG GCCAAAAGCG AAAAAGAAAA 52035 .......... .......... .......... .......... .......... .......... 449 ATCAAAGTCA AGAACAATGA ACTTAGAATT TGGATGGTAC ATAAATTCAA ACTTTTTTAG 52095 .......... .......... .......... .......... .......... .......... 449 ATAATCATGC AAGTTTAAGG ACCTCTATTT AGCAACAATC GAAAGGCTAT GCACACATGA 52155 .......... .......... .......... .......... .......... .......... 449 ACATTATATT GCTTTGTGAT TTACATAAGT GACTTTTTTC AGTATCCACA TTTGATATTC 52215 .......... .......... .......... .......... .......... .......... 449 ATATTGAATT TTAACACTCT ATAAATAATA AAAATCGTGA TTGAATTCGA TCGAAATCTT 52275 .......... .......... .......... .......... .......... .......... 449 AAATTAAAAA TTTGAATCAA AATTACTGAA TTCTTATTCG TCAATATTTA ATGATCTGTA 52335 .......... .......... .......... .......... .......... .......... 449 TTAGTGCCCC TCGAATCAAT AAAGTTTAAA AGATGGTGAC TTGTTAAGTG TACAAAAAAA 52395 .......... .......... .......... .......... .......... .......... 449 TCAAAAGAAA AATAGAGACT TGAAAGTAAG AAATATCAAA GTTTACTAAA TATGAAAGAA 52455 .......... .......... .......... .......... .......... .......... 449 AATTGTTAAC TACCTTGTAC AAAATTAGGT GGTGGAAAAT 52495 || || ||||||| .......... .......... ........GT GGAGGAAAAT 461 hqPGS_C08HBa0235H18.1+_SGN-U312654+ (46874 47131) ******************************************************************************** EST sequence 7 +strand 832 n (File: SGN-U333797+) 1 TTTTTTTTCC TTCTTGCTTT TGTGACTTAC ACTTATGCTG CCACTTTCGA GGTACGCAAC 61 AACTGTCCAT ACACCGTCTG GGCGGCGTCG ACCCCAATAG GCGGTGGTCG ACGTCTTGAT 121 CGAGGCCAAA CATGGGTCAT CAATGCACCG AGGGGCACTA AGATGGCACG TATATGGGGT 181 CGTACGAATT GCAACTTTGA TGGTGATGGT AGAGGTTCAT GTCAGACTGG TGATTGTGGT 241 GGGGTCTTGC AATGTACCGG GTGGGGCAAA CCACCAAACA CCCTGGCCGA GTACGCCTTG 301 GACCAGTTTA GCAACCTAGA TTTCTGGGAC ATTTCTTTAG TCGATGGATT TAATATTCCA 361 ATGACTTTCG CCCCGACCAA TCCTAGTGGA GGGAAATGCC ATGCAATTCA TTGTACGGCT 421 AATATAAATG GTGAATGTCC TGGTTCACTT AGGGTACCCG GAGGATGTAA CAATCCTTGT 481 ACCACGTTCG GAGGACAACA ATATTGTTGC ACACAAGGTC CATGTGGCCC TACTGATTTG 541 TCGAGATTTT TCAAACAAAG ATGTCCTGAT GCGTATAGCT ACCCACAAGA TGATCCTACT 601 AGCACATTTA CTTGCCCTAG TGGTAGTACA AATTATAGGG TTGTTTTTTG TCCTAATGGT 661 GTTACTAGCC CAAATTTCCC CTTGGAGATG CCCTCAAGTG ATGAAGAGGC TAAGTAAAAT 721 TGAGTCACTT TCTTTTAAAT TGCTTGAAGT AGTCGAAGTT ATATAATTGG CTTGTAATAA 781 ACCTAATATA ATTACATGAA TAAAAGTCAC ATCATCACAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 44826 to 52510): Exon 1 46874 47128 ( 255 n); cDNA 108 362 ( 255 n); score: 0.902 PPA cDNA 817 832 MATCH C08HBa0235H18.1+ SGN-U333797+ 0.902 255 0.306 C PGS_C08HBa0235H18.1+_SGN-U333797+ (46874 47128) Alignment (genomic DNA sequence = upper lines): TCAACGTCTC GATCAAGGCC AGACTTGGAC CATCAATGCA CTGAGGGGCA CTAAGATGGC 46933 || |||||| |||| ||||| | || ||| |||||||||| | |||||||| |||||||||| TCGACGTCTT GATCGAGGCC AAACATGGGT CATCAATGCA CCGAGGGGCA CTAAGATGGC 167 ACGTATATGG GGTCGTACTA AATGCAACTT TGACGGTGCT GGTAGAGGTT CTTGTGAGAC 46993 |||||||||| |||||||| | | |||||||| ||| |||| | |||||||||| | ||| |||| ACGTATATGG GGTCGTACGA ATTGCAACTT TGATGGTGAT GGTAGAGGTT CATGTCAGAC 227 TGGTGATTGT GGTGGAGTCT TGCAGTGTAC CGGGTGGGGT AAACCGCCAA ACACCTTGGC 47053 |||||||||| ||||| |||| |||| ||||| ||||||||| ||||| |||| ||||| |||| TGGTGATTGT GGTGGGGTCT TGCAATGTAC CGGGTGGGGC AAACCACCAA ACACCCTGGC 287 CGAATACGCC TTGAACCAGT TTAACAACCT AGATTTCTGG GACATTTCTT TAGTCGATGG 47113 ||| |||||| ||| |||||| ||| |||||| |||||||||| |||||||||| |||||||||| CGAGTACGCC TTGGACCAGT TTAGCAACCT AGATTTCTGG GACATTTCTT TAGTCGATGG 347 ATTTAATCTG CAAAT 47128 ||||||| | | ||| ATTTAATATT CCAAT 362 hqPGS_C08HBa0235H18.1+_SGN-U333797+ (46874 47128) ******************************************************************************** EST sequence 2 +strand 922 n (File: SGN-U312653+) 1 GGCGATTGGC GGCCAATCGG CCGAATTGAA CAACTTACAT TTAAAAAAAT AGTTCCACAA 61 ACATGGCCTA CTTGAGATCT TCTTTTGTTT TCTTCCTTCT TGCTTTTGTG ACTTACACTT 121 ATGCTGCCAC TTTCGAGGTA CGCAACAACT GTCCATACAC CGTCTGGGCG GCGTCGACCC 181 CAATAGGCGG TGGTCGACGT CTTGATCGAG GCCAAACATG GGTCATCAAT GCACCGAGGG 241 GCACTAAGAT GGCACGTATA TGGGGTCGTA CGAATTGCAA CTTTGATGGT GCTGGTAGAG 301 GTTCATGTCA GACTGGTGAT TGTGGTGGGG TCTTGCAATG TACCGGGTGG GGCAAACCAC 361 CAAACACCCT GGCCGAGTAC GCCTTGGACC AGTTTAGCAA CCTAGATTTC TGGGACATTT 421 CTTTAGTCGA TGGATTTAAT ATTCCAATGA CTTTCGCCCC GACCAATCCT AGTGGAGGGA 481 AATGCCATGC AATTCATTGT ACGGCTAATA TAAATGGTGA ATGTCCTGGT TCACTTAGGG 541 TACCCGGAGG ATGTAACAAT CCTTGTACCA CGTTCGGAGG ACAACAATAT TGTTGCACAC 601 AAGGTCCATG TGGCCCTACT GATTTGTCGA GATTTTTCAA ACAAAGATGT CCTGATGCGT 661 ATAGCTACCC ACAAGATGAT CCTACTAGCA CATTTACTTG CCCTAGTGGT AGTACAAATT 721 ATAGGGTTGT TTTTTGTCCT AATGGTGTTA CTAGCCCAAA TTTCCCCTTG GAGATGCCCT 781 CAAGTGATGA AGAGGCTAAG TAAAATTGAG TCACTTTCTT TTAAATTGCT TGAAGTAGTC 841 GAGTTATATA ATTGGCTTGT AATAAACCTA ATATAATTAC ATGAATAAAA GTCACATCAT 901 CACAAAAAAA AAAATGTTGT TT Predicted gene structure (within gDNA segment 43366 to 52550): Exon 1 44356 44362 ( 7 n); cDNA 187 193 ( 7 n); score: 0.714 Intron 1 44363 46873 (2511 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 46874 47128 ( 255 n); cDNA 194 448 ( 255 n); score: 0.906 PPA cDNA 902 914 MATCH C08HBa0235H18.1+ SGN-U312653+ 0.906 262 0.284 C PGS_C08HBa0235H18.1+_SGN-U312653+ (44356 44362,46874 47128) Alignment (genomic DNA sequence = upper lines): GCGTTCGATG AGGGTTTGGA GTTTCCTAAT CCTAAGCTTA CGGCATTGAA AACAAAATAA 44415 ||| | | GCGGTGG... .......... .......... .......... .......... .......... 193 GATAAGCAAA TAGTAAAGAG AAGGATAGAG AGAGAGAGAT TTGGGTCCAA CTCCGGGTTC 44475 .......... .......... .......... .......... .......... .......... 193 TGTTATCCTT GACCGAATGT TGGACCCACC TGCCTTTGGG TTTTTTAGCC CATTTCTGTA 44535 .......... .......... .......... .......... .......... .......... 193 CCTGTCCTAA TCTAAACATA CAAACATAAT ATAGAAAACA AAAAAACGAT ATTTTTGTGA 44595 .......... .......... .......... .......... .......... .......... 193 AGTTAACTTT TTAATAAATG ATAAATATAA TAAATTTCAA AAATCAAATA TATTTGGACG 44655 .......... .......... .......... .......... .......... .......... 193 ACTACTTAAA TGTTTCAGTT TATTTTTTGA GCCAAATTTT TATCAGTGTG AATTGAATTG 44715 .......... .......... .......... .......... .......... .......... 193 ATTCAAAATT TGAAAAAGAA AAATATTTTC CACCTCAATT TTTCTATATA TTTTGTGTAA 44775 .......... .......... .......... .......... .......... .......... 193 AAATGATTTT TTTTTCCCGA AGTTCTTAAA GCAAACTTGA CAATATCACA AAATATTTAA 44835 .......... .......... .......... .......... .......... .......... 193 ATTTCATTAC TTCAAAATGA TCTAAATATT CCTGCTGAAT ATGATGTTAG TTTATAATGA 44895 .......... .......... .......... .......... .......... .......... 193 AATTAGACGA GAAATTCCTG AATATGACTG CCCACGTGAA TTTTAGTTTT TCTTTGACAA 44955 .......... .......... .......... .......... .......... .......... 193 AGAAAAACAT GGCAACTACT TATTAATTTT TTTAAATTGA TCAAATATTT ATTTTCAAAA 45015 .......... .......... .......... .......... .......... .......... 193 ATAATTAATT ATTAAGAGTA TAATTAAAAA ATTATTATAA TTTATACATT AATTTTACAA 45075 .......... .......... .......... .......... .......... .......... 193 AATAACAAAT ATTACGAACT AACTATTTTA TAATAAAAAT GACATATAAA AAGATACGGA 45135 .......... .......... .......... .......... .......... .......... 193 ATAAAAATAA TCACATATAT CAATAATATT ACATCGGAAT AATGATGAGG AAAATTTTCC 45195 .......... .......... .......... .......... .......... .......... 193 ACGAGTCACT ATTCCACGTC CGCATTTAAT TCTTCATGAA TATTTTTTGG TCTTTTTGGG 45255 .......... .......... .......... .......... .......... .......... 193 AACCTTCTCC TAACTTTACT CGTATCGAAT TTAACTAAAT CTAAATTCTT ATTAAAAAAT 45315 .......... .......... .......... .......... .......... .......... 193 TCTATATTAA AAATATAATA TTTGTGATTT AAAATTGTGA ACATCTAATT TTTTATCAAA 45375 .......... .......... .......... .......... .......... .......... 193 ATATAAAGAA TCAAACACCA ATTTTTTTAA AAAAAGGTTA TATTTAAAAT AAAATAAAAT 45435 .......... .......... .......... .......... .......... .......... 193 AATAATAATA AATTGTAAAT TAATAAAACT AATAAAATCA ATTATAGTTT ATTAATAAAA 45495 .......... .......... .......... .......... .......... .......... 193 AAAGAATTGA TAAATAGAAG TTGGGAATTT AAGTTATTTG TTAATTATCT AGTTTAAAAA 45555 .......... .......... .......... .......... .......... .......... 193 TAATTTAAGT TATTTGTTCA CCTTATCCTA ATTATTCCCA ACTTTCTAAC TTATTTTACT 45615 .......... .......... .......... .......... .......... .......... 193 AAAAAGTTTC ATTCCATTAA TTTTGATTTT TTTTTCTTCT GACGTTCATT TGACTTTTTT 45675 .......... .......... .......... .......... .......... .......... 193 TTTAATTTTT TTTTTAAATT TAATTTTCTA TTATTATTAT TTATTTATTT TATATCCTTA 45735 .......... .......... .......... .......... .......... .......... 193 TCTCAACCCC AATTCCCTCA ACAATATTTC AAACTAAATC CTAATCCAAC TCTATTACTA 45795 .......... .......... .......... .......... .......... .......... 193 TCCATTTAAT TAGCATCAAA CTCTCTCAGT TGAGAAGAAA ACAGAGAATA CAGACAAAGA 45855 .......... .......... .......... .......... .......... .......... 193 AGAGACACAG ACACACAGAT ACAGAGAGAA ATATAGGGGA AAAAAACGAG TTATTTCTTT 45915 .......... .......... .......... .......... .......... .......... 193 TGAGAATTAG GCTAGAGTCA GAAATTTGGA AATTTGATCG TGATTCCGAA TTTGTGGATA 45975 .......... .......... .......... .......... .......... .......... 193 CAGCTCGCTT TTTGTGGTAT CAATTTTCGC AGCGAGCTAA CTATAAATTC TCGCGTGATT 46035 .......... .......... .......... .......... .......... .......... 193 TAAATAATAC TACTTCTATG AAAAATTGAT TTTAATAGCA ATCACATGTA TTATATTATT 46095 .......... .......... .......... .......... .......... .......... 193 GTTACGTTAT TACTATTATT ATGTTTTTTT TAGATAGATT TTGCAATTTA TGTTGCTTCA 46155 .......... .......... .......... .......... .......... .......... 193 TGATATTGAG TTGTTGAATT TAAATAGATT AATATATATT TTCGTCTATT TTCACTTTAG 46215 .......... .......... .......... .......... .......... .......... 193 AAGATTTTTG TTGAATTAAT TGTATACTTG TTAGATTAGG ATATAAAAAT AATAACTAAT 46275 .......... .......... .......... .......... .......... .......... 193 AAATAATTTT TTTTCAAAAA GAAAAACTAA TCTAAGTAGA ATTGTAATTA AAAGGTAAAT 46335 .......... .......... .......... .......... .......... .......... 193 AAATTTCATT TAGAGATTAA TATTATAAAC TAATAATAAT AATAAAAATA ATAATAATAA 46395 .......... .......... .......... .......... .......... .......... 193 TAATAACAGA AGTAAAAATT GAGAAATGAT ATAAAGAGAA AAGAGATTTT AAAAAGAAAA 46455 .......... .......... .......... .......... .......... .......... 193 AGAAAAAAAA AGGGGCATGA AAATATAATA ATAAAAAAAA CATAACAAAA TTTTTTAACA 46515 .......... .......... .......... .......... .......... .......... 193 AAAACAAAAA AAAAAGAACG TAAATTAAAA AAAAATACAA AAACGTAAAA AATAAAAAGG 46575 .......... .......... .......... .......... .......... .......... 193 GAGAAGTAAG AAATAAAAAA TAGAAATTTA AAATTAATAA AATAAAACGT TAAAAAAAAA 46635 .......... .......... .......... .......... .......... .......... 193 CAAATAATAA CAACACAATT AAAAAAAACG ATAAAAGAAT AACAAAATTA GTACAAAATA 46695 .......... .......... .......... .......... .......... .......... 193 ATTGGAAAAA AAAAAGAAAA GAAGAAGACA AAACTATAAA ATAATAATAT ACTAAAAATA 46755 .......... .......... .......... .......... .......... .......... 193 ATGATAAAAT AAAATAATAA AAAAAAGAAG AAGAGAGAAA CGTTCTTTCA GAGAAAAAAA 46815 .......... .......... .......... .......... .......... .......... 193 AAACAAACAA ATATATAAAA TTTAAAATAA ACAAGAAACA TGAAAAAAAA AAGATTTTTC 46875 || .......... .......... .......... .......... .......... ........TC 195 AACGTCTCGA TCAAGGCCAG ACTTGGACCA TCAATGCACT GAGGGGCACT AAGATGGCAC 46935 |||||| || || |||||| || ||| || ||||||||| |||||||||| |||||||||| GACGTCTTGA TCGAGGCCAA ACATGGGTCA TCAATGCACC GAGGGGCACT AAGATGGCAC 255 GTATATGGGG TCGTACTAAA TGCAACTTTG ACGGTGCTGG TAGAGGTTCT TGTGAGACTG 46995 |||||||||| |||||| || |||||||||| | |||||||| ||||||||| ||| |||||| GTATATGGGG TCGTACGAAT TGCAACTTTG ATGGTGCTGG TAGAGGTTCA TGTCAGACTG 315 GTGATTGTGG TGGAGTCTTG CAGTGTACCG GGTGGGGTAA ACCGCCAAAC ACCTTGGCCG 47055 |||||||||| ||| |||||| || ||||||| ||||||| || ||| |||||| ||| |||||| GTGATTGTGG TGGGGTCTTG CAATGTACCG GGTGGGGCAA ACCACCAAAC ACCCTGGCCG 375 AATACGCCTT GAACCAGTTT AACAACCTAG ATTTCTGGGA CATTTCTTTA GTCGATGGAT 47115 | |||||||| | |||||||| | |||||||| |||||||||| |||||||||| |||||||||| AGTACGCCTT GGACCAGTTT AGCAACCTAG ATTTCTGGGA CATTTCTTTA GTCGATGGAT 435 TTAATCTGCA AAT 47128 ||||| | | ||| TTAATATTCC AAT 448 hqPGS_C08HBa0235H18.1+_SGN-U312653+ (46874 47128) ******************************************************************************** EST sequence 9 +strand 892 n (File: SGN-U333798+) 1 AAAGCTGGAG CTCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GCTCCGATAG GCGGTGGTCG ACGTCTCAAT CGAGGCCAAA CATGGGTCAT CAATGCTCCG 121 AGGGGAACTA AGATGGCACG TATATGGGGT CGTACTGGTT GCAACTTTAA TGCTGCAGGC 181 AGAGGTACAT GTCAGACTGG TGATTGTGGT GGAGTCTTAC AGTGTACCGG ATGGGGCAAA 241 CCCCCAAACA CCCTAGCCGA GTACGCCTTG GACCAGTTTA GCAACTTAGA TTTTTGGGAC 301 ATTTCTTTAG TCGATGGATT TAATATTCCA ATGACTTTTG CCCCAACAAA ACCTAGTGGA 361 GGAAAATGTC ACGCAATTCA TTGCACGGCC AATATAAATG GTGAATGTCC TCGCGCCCTT 421 AAGGTACCTG GAGGATGTAA CAACCCTTGT ACCACGTTTG GAGGACAACA ATATTGTTGC 481 ACCCAAGGTC CATGTGGCCC TACAGAGTTG TCCAAATTTT TCAAGAAAAG ATGTCCCGAT 541 GCTTATAGCT ACCCACAAGA CGATCCTACA AGCACATTTA CTTGCCCCTG GTGGTAGTAC 601 AAACTATAGG GTTGTCTTTT GTCCTAATGG GTGTGCTGAT CCCNAATTCC CCTTGAGATG 661 CCTGCAAGTA CTGATGAAGT GGCCAAGTGA AATTGNNAGT TCTCATTTTA ATCGCCTCAT 721 TAGTCAACTG ATCTCTACCG TAATGAAAAT CTTTATAGCT CAGTTTTTTA AAAAAAAAAA 781 AAAAAAAAAA CTCGAGGGGG GGCCGGTACC CATTTCGCCT ATAGTGAGTC GTATTACATC 841 ACTGGGCGTC GTTTAACACG TCGTGACTGG GAAACCCTGN CGTACCAACT AT Predicted gene structure (within gDNA segment 45063 to 53410): Exon 1 46877 47131 ( 255 n); cDNA 81 335 ( 255 n); score: 0.859 Intron 1 47132 50350 (3219 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0) Exon 2 50351 50370 ( 20 n); cDNA 336 355 ( 20 n); score: 0.600 Intron 2 50371 52483 (2113 n); Pd: 0.900 (s: 0), Pa: 0.471 (s: 0) Exon 3 52484 52495 ( 12 n); cDNA 356 367 ( 12 n); score: 0.917 MATCH C08HBa0235H18.1+ SGN-U333798+ 0.859 287 0.322 C PGS_C08HBa0235H18.1+_SGN-U333798+ (46877 47131,50351 50370,52484 52495) Alignment (genomic DNA sequence = upper lines): ACGTCTCGAT CAAGGCCAGA CTTGGACCAT CAATGCACTG AGGGGCACTA AGATGGCACG 46936 ||||||| || | |||||| | | ||| ||| |||||| | | ||||| |||| |||||||||| ACGTCTCAAT CGAGGCCAAA CATGGGTCAT CAATGCTCCG AGGGGAACTA AGATGGCACG 140 TATATGGGGT CGTACTAAAT GCAACTTTGA CGGTGCTGGT AGAGGTTCTT GTGAGACTGG 46996 |||||||||| |||||| | |||||||| | | ||| || |||||| | | || ||||||| TATATGGGGT CGTACTGGTT GCAACTTTAA TGCTGCAGGC AGAGGTACAT GTCAGACTGG 200 TGATTGTGGT GGAGTCTTGC AGTGTACCGG GTGGGGTAAA CCGCCAAACA CCTTGGCCGA 47056 |||||||||| |||||||| | |||||||||| ||||| ||| || ||||||| || | ||||| TGATTGTGGT GGAGTCTTAC AGTGTACCGG ATGGGGCAAA CCCCCAAACA CCCTAGCCGA 260 ATACGCCTTG AACCAGTTTA ACAACCTAGA TTTCTGGGAC ATTTCTTTAG TCGATGGATT 47116 ||||||||| ||||||||| |||| |||| ||| |||||| |||||||||| |||||||||| GTACGCCTTG GACCAGTTTA GCAACTTAGA TTTTTGGGAC ATTTCTTTAG TCGATGGATT 320 TAATCTGCAA ATTAGAAATT CGGGTAAGGA ATTCTGTTGA CCGAAGGGAA GGTATTAGGC 47176 |||| | | | || | TAATATTCCA ATGAC..... .......... .......... .......... .......... 335 ACCCCTCGAA TCCCGTGGTT CTAGCACGGT CGCTTTATTA ACTTTAATAT GACCTGACTT 47236 .......... .......... .......... .......... .......... .......... 335 AATTTTGGAT ATTATATTTT TTAAACTAAT TATAAAATTG TTATTTATCC TCAAATTTAT 47296 .......... .......... .......... .......... .......... .......... 335 TTTAAACTTA TTTCAAACTG GCTTATTTAT TTTAAAGGGT GTTTATTTTT ATTTTTATTT 47356 .......... .......... .......... .......... .......... .......... 335 TTGTGTAATT TTAAAATTGA ACATCCGTAT ATATTTTTTT TGCTTATATT TGTATGTTTT 47416 .......... .......... .......... .......... .......... .......... 335 TAATTTTTAA TGTTATAATA GGTAGAATAT ATATAGATAT CTAATTTCTA AGAATTAGAG 47476 .......... .......... .......... .......... .......... .......... 335 TTTGTGTAAA AAGGACATAT TTAGAGTTCA AGTTAATTTA GGATTACATA TTTTAGATTT 47536 .......... .......... .......... .......... .......... .......... 335 TATCGAGACT CAATACAGAT ACCAGATATT AATTTCTACT GCAGGGTCTA TTTGGGAGTG 47596 .......... .......... .......... .......... .......... .......... 335 GCGCTTCTAA CATGATTTTT TTCATATCCA AAGCTCGAAT TCGAGATTTC TGATTAAGGT 47656 .......... .......... .......... .......... .......... .......... 335 AAAGCATTCT CACTAGTGCA CCACAACTCA TGTTGGTCAT ATAAAATTTT TTAATTTTTG 47716 .......... .......... .......... .......... .......... .......... 335 TGATAATATT ATTTTCTTCT AAAAAGTCTC ACTCAATTAA GAATATTCTT AACACTATAT 47776 .......... .......... .......... .......... .......... .......... 335 TTAGCTTCTT CTATTTTTCA ATTATATATT AATATTTATT TGCACATATT AAATTCATAA 47836 .......... .......... .......... .......... .......... .......... 335 TTTAAATTGC AATTGACCGC ATGCAAATCA AAGTCTTCGT CAAATACGAC GAGTCGTACA 47896 .......... .......... .......... .......... .......... .......... 335 CATGCCTTAA AATTTGAGGG GCTTATTTTT TTAGCAATAA TATACTTATA AGTAATTTCA 47956 .......... .......... .......... .......... .......... .......... 335 AAAGTAAGTA TCATCTATTT CAATTTTTAG TTTAACAGTA TAAGATTTAA ATGATTTTTT 48016 .......... .......... .......... .......... .......... .......... 335 TATTTAATTT CAATTATCAT ATCAAGTCAA AAAATAAGAT AAATAAATGG AAAATTGAAA 48076 .......... .......... .......... .......... .......... .......... 335 GTACTATTTA TTGAATAAAA ATAAACTATT TCATGTGAAA GAAAAAAAAT AACTTTCCAT 48136 .......... .......... .......... .......... .......... .......... 335 CACTTTTTAA GAAATATATT AGTAGCAACT TTGTATTCTA AAAAAAAATA TAGAAGAATG 48196 .......... .......... .......... .......... .......... .......... 335 GACTTTCTTT AAATTTTAAA TAGTACTTAT TTGAATTATA AAATAATCTC AATTAATGTT 48256 .......... .......... .......... .......... .......... .......... 335 CTATTTTTTT TCCAAGAGAT ATATTATGGT TTAAAAATTA ATCCATGATG TGGAAAAATG 48316 .......... .......... .......... .......... .......... .......... 335 ATCAGGAAAT TTTCCCACAA ACCACTATAT AACTTCTTCT TTTCTGTACT TTTGAATTCG 48376 .......... .......... .......... .......... .......... .......... 335 ATTAAATTAA AAATTTTGTT AAAAAATTCA AATTGAAGAT ATAACTTTCA ACTTTAATGA 48436 .......... .......... .......... .......... .......... .......... 335 AAATTTTAGA TCAACATTTA AATTTGAGAT TACTGGAAAA AAAATTGGCA TGTATTACTT 48496 .......... .......... .......... .......... .......... .......... 335 ATGTAATAAT AGTTATTAAC TATTTGTTTT AGAATTATCA AAATTCCAGT ATAATTAGGT 48556 .......... .......... .......... .......... .......... .......... 335 GATTCTTTTT TGGGACATTG TGGGGTTTCA ACTTTCAATT TACAAGACTA GCAAGACTTG 48616 .......... .......... .......... .......... .......... .......... 335 CTGTTGATAG GTTAGAAAAG TCTTTGTAAG AAATGAATTG TATTATTTTT CAAAAAAATT 48676 .......... .......... .......... .......... .......... .......... 335 ATAATATAAA AGAAGATATA AATACATGTG TAATGATATA TTATCTAATT AAAATAATAA 48736 .......... .......... .......... .......... .......... .......... 335 GTATTTTAAA GTTAAAGTAT ATTACTAAAT ATAAAAAAGA TATTTATCAT TTATTCAAAA 48796 .......... .......... .......... .......... .......... .......... 335 CTGATTAAAG AAAATCACAT AAATTAAAAT GAAAGAAATA CAGCCTTATT TTCTCAAATT 48856 .......... .......... .......... .......... .......... .......... 335 AGTGGAAATA GTTAAAATTT GAATTTGAAA TAATGACATT GCAAACCCGT ATTGTATATA 48916 .......... .......... .......... .......... .......... .......... 335 TAATATATCA AAAAGCTATA TACCTATAGG GAAATATAAT TAATATATAA ATTTTTCTCG 48976 .......... .......... .......... .......... .......... .......... 335 TCAAGTAAAA AAGTGTTAAT ACATATCTTA ATATATAGAT ATTCATTCAA ATTCAAATGT 49036 .......... .......... .......... .......... .......... .......... 335 CTTAATTTTA AGGAAAGTAT TAGAAACAAT TAAATGCTTA CAACTAAACG AAACAAAAAA 49096 .......... .......... .......... .......... .......... .......... 335 TTCAATCTGT CGGTGGCATT TACTGACACT AAAAGGGAAT AATTAGAAAT GTTCATTTTT 49156 .......... .......... .......... .......... .......... .......... 335 TAAAAAATAA AATAAAAATA GAAATCTCCT ATAACCAAAA ACGACATTTT CTATTAATTT 49216 .......... .......... .......... .......... .......... .......... 335 ACCCTTTATA TATTTTTTAT CACTTTTAAA ACACAATCCT AATTTTTAGG GAAAAAATAA 49276 .......... .......... .......... .......... .......... .......... 335 ATTAATTCTT CATATCTTGA TTTTTAAATT GACTAGGATT TTAAAATGAA CTTTGTCTTT 49336 .......... .......... .......... .......... .......... .......... 335 AATAATGTTG ATAATTAATA TGAGACAAAG TCGGAGAATA CTTAATGGCT TTAGTCATGT 49396 .......... .......... .......... .......... .......... .......... 335 TGCTCAGAAA GAAATGTTTA ATTAGTTATA TACTACGGAA AAGGGTTAAA ATATTCTTAA 49456 .......... .......... .......... .......... .......... .......... 335 ACTATCAGAA ATAGATTTAC CCTTAAATTA TATTTTGATT TAAAACTATT TTTCTATCAA 49516 .......... .......... .......... .......... .......... .......... 335 ATTATTGGGT CAAAAATACC CTTCTTATTT TTTTTACCCT TTTCCGTATA TATTTTTAAA 49576 .......... .......... .......... .......... .......... .......... 335 AAAGACATTT TGATGAAAAT TTTTAGAAAT TGGAGCAAAA AGCATTAGAT GATCATAATA 49636 .......... .......... .......... .......... .......... .......... 335 ATACATATTG CAAATATTTG ACTGCAAAGC TAAGTCTTTG TCAATAATAA ATATGAAGCT 49696 .......... .......... .......... .......... .......... .......... 335 ATTGCAATTT GTGGTCCTCA TGCATTGGAA ATAGTATGCA TAGCCTTTTA ATTAAGATGT 49756 .......... .......... .......... .......... .......... .......... 335 ACATTGAGTT ACATAGCTGG AAAGTCGTCG TTTATTAAGA GTGTTTTATT TATTAATGTG 49816 .......... .......... .......... .......... .......... .......... 335 AATTTTTTAA ATACAAATTT ATATTTAATC GAGATTTAAT ATGAATAATT AAACACCAAA 49876 .......... .......... .......... .......... .......... .......... 335 ATTTAAATTT AAGAAGGTAC AATAATTTAC CCCTCCTTTT GTTTTTAACT AGCTAGATCG 49936 .......... .......... .......... .......... .......... .......... 335 AATTGTATAT ATAGGTAATC ATAATATTCA AATTGTGCAA TATTTGACTG TGTATAGCTA 49996 .......... .......... .......... .......... .......... .......... 335 AGTGGTCAAT TTATAGTTGG TCGTCATCAC TAGAACTTTA TAGCCTTTTA ACTCTTCTTT 50056 .......... .......... .......... .......... .......... .......... 335 GAAAAATTAA ATTGATTAGA ATACTTTAAA GAAATTAATT TAATTTCATG TGAAAAAGTA 50116 .......... .......... .......... .......... .......... .......... 335 ATTTTAAGCC ACTTAATTAA TTTCATGTAC TTAATAATGG GAACGAGGAA TATAAAATTA 50176 .......... .......... .......... .......... .......... .......... 335 TATTGGGTGA AGCTTCCACA AAGAGAATCC TTAATATTAT AATATTATAT AATACTTTTT 50236 .......... .......... .......... .......... .......... .......... 335 GTTCTGAATT AAATCTCGAT GATTTTTAAA ATAAAATCTA GCTCGCTTAA TTAAGAGTGT 50296 .......... .......... .......... .......... .......... .......... 335 TCATAATGTT AATCGTAACT TCTCTTACTT TTCAATTATA TGGCAAATGT GAAGTTTTGC 50356 |||||| .......... .......... .......... .......... .......... ....TTTTGC 341 ACAACTAGAA AGCAATCTCC TTCTCGAATT AAGTTTCATG TATGCATGAC TTACCACTTT 50416 | | | || | CCCAACAAAA CCTA...... .......... .......... .......... .......... 355 ATTCCTCGAA TAATTTTACA TAGCTCATCA CTAAAATCGT CGATTCATGT GTTGAAATGG 50476 .......... .......... .......... .......... .......... .......... 355 ATATTAATTA TCTGTCACGT ATAGTTTTCA AATATTTATG ATCATCGAAG TCCATATATA 50536 .......... .......... .......... .......... .......... .......... 355 ATGCAAGCTC CTATTATTAT TAATTTTTGT CTAGCTTTTC ATAGAGGGTG AAAGACGGAT 50596 .......... .......... .......... .......... .......... .......... 355 CAGACTCAAT ACCATGCATC TTCATACTCA TCTCGTCAAA AGCTATTAAC TTAAACCTTG 50656 .......... .......... .......... .......... .......... .......... 355 AGGGAAACTT AAAAGTGACC AAATCATCAT AAAGATATTC TTTATTTTCC TTTTATTCAT 50716 .......... .......... .......... .......... .......... .......... 355 CACAAACTAA GGAACTACAT AGTACTTCCA TATTATCACT ATATATATGA TGAATAAAAA 50776 .......... .......... .......... .......... .......... .......... 355 CATCATATTT TTCCTTGACT TAGTAATTAA TCCTCCTAGC AAGGAGAATA ACATAGCCTT 50836 .......... .......... .......... .......... .......... .......... 355 ATTCAAATTA TTAATACAAA AGGATATATA GATAGGCAGA TAGATATTTA AGGACAGAAT 50896 .......... .......... .......... .......... .......... .......... 355 ACAACCCTAT AATTAGTACC AGCAGGGCAA GTGAAAGTAC TAGTTTGATC ATCCTTAGGG 50956 .......... .......... .......... .......... .......... .......... 355 TAACTATATG CATCAGGACA CCTCTCCTTA AAAAATCTCG AAAATTTAGT CGGACCACAG 51016 .......... .......... .......... .......... .......... .......... 355 TTACCAGAGT TACAACAATA TTGATCAGTC TTAAAAACAG TACAAGGGTT GTTACATCCT 51076 .......... .......... .......... .......... .......... .......... 355 CCGGGAGCTT TCAATTCATT AGGACATTGT TGATTAATTT CCGCTTTACA CGTTATGCCA 51136 .......... .......... .......... .......... .......... .......... 355 CGGGTGCACC CATTGGAAGT TGGACTAAAT TCCATAGGAA CATTAAATCC ATCGACAAGA 51196 .......... .......... .......... .......... .......... .......... 355 GAAATATCGA AAAAATCTTT ATTTGCAAAT TGGTTTAGGG CATATTCAGC TAATGTATTT 51256 .......... .......... .......... .......... .......... .......... 355 GGTGGTACAC CAAAAGATTT ACATACAAGA AGACCATTAC AATCTCCAGT TTGGCATTTT 51316 .......... .......... .......... .......... .......... .......... 355 CCCTTACCGG ATGCATCGAA ATTGCATCCG GTACGGCCCC AAACTCGAGC TTGTTTAGTC 51376 .......... .......... .......... .......... .......... .......... 355 CCCGGAGGGG CGTTTATCGT CCACGTTTGG CCACGATCGA GGCGTTTGCC GCCTCCGGCT 51436 .......... .......... .......... .......... .......... .......... 355 GGGACTCCGG CAGCCCAAAC GGTGTAGGGA CAATTGTTAC GAACTAAAAT TGTGGCTGCA 51496 .......... .......... .......... .......... .......... .......... 355 TTGGCATAGG TGAAAAAAAG GGAAAAGAGA ATAAAAATTG AAGTTTTCAT ATTTTTATTT 51556 .......... .......... .......... .......... .......... .......... 355 TTTGTGTGAC TACTAATAAA TTGGGATGAG TGATTTTTTA TGAGGGAGTA ATAATAATTA 51616 .......... .......... .......... .......... .......... .......... 355 GAAGGGTATT TATAGGGTAA AAATGGGGCA CCAATATAGT TGGTAAGTAA CTAATTTGTT 51676 .......... .......... .......... .......... .......... .......... 355 TGAAATTTTA GTTTGTGATA ATGTAATGTA ATGTTTTGAG TAGACTAGTA CATTATTCTA 51736 .......... .......... .......... .......... .......... .......... 355 TCGAGGGTGC AAGGTGTGGC TACTAGAAGT TGTAGAAAAT GTAGCTAGGG TCTATTATTC 51796 .......... .......... .......... .......... .......... .......... 355 AAGCTTGGAT TTTATTTTTT ACTTTTGAAT AATATGTATA TATATATATA TTTATTTTTT 51856 .......... .......... .......... .......... .......... .......... 355 TTACGTATCA GAACGAAGTT CGATTAAATT TAGATACGCG CTTTAAAGTT GTATATTGAG 51916 .......... .......... .......... .......... .......... .......... 355 TATAAAACGT TTCCTAACAA AAATAACTAT GTACTTAAGA GACTCGAACT CGAAACATCT 51976 .......... .......... .......... .......... .......... .......... 355 GATTAAGAAT TAATGAAATA GAATACTTAT CACTTCACGG CCAAAAGCGA AAAAGAAAAA 52036 .......... .......... .......... .......... .......... .......... 355 TCAAAGTCAA GAACAATGAA CTTAGAATTT GGATGGTACA TAAATTCAAA CTTTTTTAGA 52096 .......... .......... .......... .......... .......... .......... 355 TAATCATGCA AGTTTAAGGA CCTCTATTTA GCAACAATCG AAAGGCTATG CACACATGAA 52156 .......... .......... .......... .......... .......... .......... 355 CATTATATTG CTTTGTGATT TACATAAGTG ACTTTTTTCA GTATCCACAT TTGATATTCA 52216 .......... .......... .......... .......... .......... .......... 355 TATTGAATTT TAACACTCTA TAAATAATAA AAATCGTGAT TGAATTCGAT CGAAATCTTA 52276 .......... .......... .......... .......... .......... .......... 355 AATTAAAAAT TTGAATCAAA ATTACTGAAT TCTTATTCGT CAATATTTAA TGATCTGTAT 52336 .......... .......... .......... .......... .......... .......... 355 TAGTGCCCCT CGAATCAATA AAGTTTAAAA GATGGTGACT TGTTAAGTGT ACAAAAAAAT 52396 .......... .......... .......... .......... .......... .......... 355 CAAAAGAAAA ATAGAGACTT GAAAGTAAGA AATATCAAAG TTTACTAAAT ATGAAAGAAA 52456 .......... .......... .......... .......... .......... .......... 355 ATTGTTAACT ACCTTGTACA AAATTAGGTG GTGGAAAAT 52495 ||| | ||||||| .......... .......... .......GTG GAGGAAAAT 367 hqPGS_C08HBa0235H18.1+_SGN-U333798+ (46877 47131) ******************************************************************************** EST sequence 32 -strand 697 n (File: SGN-U312318-) 1 TTTTTTTTTT TTTTTTTAGG CACAAATNTG ATTCCAATTA ATGGTGTCTT TTAAATACGA 61 ATGCGGGTTA ACTAATCATG TAACAAACAT AGCCTTTTCT CAACAACAAG AGTTCACAAA 121 TTTTCTCGAG TTTTTTTTTT TTTTTTTTGA AAAAAAACAC GTTTCATGTA ACTTAAAATT 181 GAAAGAGTAC AAGTAAAACT CCTATTTTTT TTTTTTTTTT TAGAGCCGAA AAAGAAGTAG 241 AGCATGTCAA TAAACAAGAA TACAAGCTAA AAGCCAGAGT ATCAAATACT AAAGCCGCAG 301 GAAAAAACAC AGAAAAAATC TGAATCAGCC ACGCGGACGC CCCAAACAGC CAAAGAAAAC 361 GAAATAGCTT ACTGAGAAAC ATGAAAATAC TAAAGGGCAA GTCGTAAGCT CCTGGGGTCA 421 AATAAAAGTT CCAAGAACAA TGGTAATTAT AGACAATCAA CTCAGATGTG TATGCGTTTC 481 AGATCCTTCG TATCGATTTT TGACCAAATC ATCATAAAGA TATTCTTTAT TTTCCTTTTA 541 TTCATCACAA ACTAAGGAAC TACATAGTAC TTCCATATTA TCACTATATA TATGATGAAT 601 AAAAACATCA TATTTTTCCT TGACTTAGTA ATTAATCCTC CTAGCAAGGA GAATAACATA 661 GCCTTATTCA AATTATTAAT ACAAAAGGAT ATATAGA Predicted gene structure (within gDNA segment 45062 to 51468): Exon 1 46129 46137 ( 9 n); cDNA 492 500 ( 9 n); score: 0.889 Intron 1 46138 50671 (4534 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 50672 50868 ( 197 n); cDNA 501 697 ( 197 n); score: 1.000 PPA cDNA 17 1 MATCH C08HBa0235H18.1+ SGN-U312318- 1.000 206 0.296 C PGS_C08HBa0235H18.1+_SGN-U312318- (46129 46137,50672 50868) Alignment (genomic DNA sequence = upper lines): ATAGATTTTG CAATTTATGT TGCTTCATGA TATTGAGTTG TTGAATTTAA ATAGATTAAT 46188 || |||||| ATCGATTTT. .......... .......... .......... .......... .......... 500 ATATATTTTC GTCTATTTTC ACTTTAGAAG ATTTTTGTTG AATTAATTGT ATACTTGTTA 46248 .......... .......... .......... .......... .......... .......... 500 GATTAGGATA TAAAAATAAT AACTAATAAA TAATTTTTTT TCAAAAAGAA AAACTAATCT 46308 .......... .......... .......... .......... .......... .......... 500 AAGTAGAATT GTAATTAAAA GGTAAATAAA TTTCATTTAG AGATTAATAT TATAAACTAA 46368 .......... .......... .......... .......... .......... .......... 500 TAATAATAAT AAAAATAATA ATAATAATAA TAACAGAAGT AAAAATTGAG AAATGATATA 46428 .......... .......... .......... .......... .......... .......... 500 AAGAGAAAAG AGATTTTAAA AAGAAAAAGA AAAAAAAAGG GGCATGAAAA TATAATAATA 46488 .......... .......... .......... .......... .......... .......... 500 AAAAAAACAT AACAAAATTT TTTAACAAAA ACAAAAAAAA AAGAACGTAA ATTAAAAAAA 46548 .......... .......... .......... .......... .......... .......... 500 AATACAAAAA CGTAAAAAAT AAAAAGGGAG AAGTAAGAAA TAAAAAATAG AAATTTAAAA 46608 .......... .......... .......... .......... .......... .......... 500 TTAATAAAAT AAAACGTTAA AAAAAAACAA ATAATAACAA CACAATTAAA AAAAACGATA 46668 .......... .......... .......... .......... .......... .......... 500 AAAGAATAAC AAAATTAGTA CAAAATAATT GGAAAAAAAA AAGAAAAGAA GAAGACAAAA 46728 .......... .......... .......... .......... .......... .......... 500 CTATAAAATA ATAATATACT AAAAATAATG ATAAAATAAA ATAATAAAAA AAAGAAGAAG 46788 .......... .......... .......... .......... .......... .......... 500 AGAGAAACGT TCTTTCAGAG AAAAAAAAAA CAAACAAATA TATAAAATTT AAAATAAACA 46848 .......... .......... .......... .......... .......... .......... 500 AGAAACATGA AAAAAAAAAG ATTTTTCAAC GTCTCGATCA AGGCCAGACT TGGACCATCA 46908 .......... .......... .......... .......... .......... .......... 500 ATGCACTGAG GGGCACTAAG ATGGCACGTA TATGGGGTCG TACTAAATGC AACTTTGACG 46968 .......... .......... .......... .......... .......... .......... 500 GTGCTGGTAG AGGTTCTTGT GAGACTGGTG ATTGTGGTGG AGTCTTGCAG TGTACCGGGT 47028 .......... .......... .......... .......... .......... .......... 500 GGGGTAAACC GCCAAACACC TTGGCCGAAT ACGCCTTGAA CCAGTTTAAC AACCTAGATT 47088 .......... .......... .......... .......... .......... .......... 500 TCTGGGACAT TTCTTTAGTC GATGGATTTA ATCTGCAAAT TAGAAATTCG GGTAAGGAAT 47148 .......... .......... .......... .......... .......... .......... 500 TCTGTTGACC GAAGGGAAGG TATTAGGCAC CCCTCGAATC CCGTGGTTCT AGCACGGTCG 47208 .......... .......... .......... .......... .......... .......... 500 CTTTATTAAC TTTAATATGA CCTGACTTAA TTTTGGATAT TATATTTTTT AAACTAATTA 47268 .......... .......... .......... .......... .......... .......... 500 TAAAATTGTT ATTTATCCTC AAATTTATTT TAAACTTATT TCAAACTGGC TTATTTATTT 47328 .......... .......... .......... .......... .......... .......... 500 TAAAGGGTGT TTATTTTTAT TTTTATTTTT GTGTAATTTT AAAATTGAAC ATCCGTATAT 47388 .......... .......... .......... .......... .......... .......... 500 ATTTTTTTTG CTTATATTTG TATGTTTTTA ATTTTTAATG TTATAATAGG TAGAATATAT 47448 .......... .......... .......... .......... .......... .......... 500 ATAGATATCT AATTTCTAAG AATTAGAGTT TGTGTAAAAA GGACATATTT AGAGTTCAAG 47508 .......... .......... .......... .......... .......... .......... 500 TTAATTTAGG ATTACATATT TTAGATTTTA TCGAGACTCA ATACAGATAC CAGATATTAA 47568 .......... .......... .......... .......... .......... .......... 500 TTTCTACTGC AGGGTCTATT TGGGAGTGGC GCTTCTAACA TGATTTTTTT CATATCCAAA 47628 .......... .......... .......... .......... .......... .......... 500 GCTCGAATTC GAGATTTCTG ATTAAGGTAA AGCATTCTCA CTAGTGCACC ACAACTCATG 47688 .......... .......... .......... .......... .......... .......... 500 TTGGTCATAT AAAATTTTTT AATTTTTGTG ATAATATTAT TTTCTTCTAA AAAGTCTCAC 47748 .......... .......... .......... .......... .......... .......... 500 TCAATTAAGA ATATTCTTAA CACTATATTT AGCTTCTTCT ATTTTTCAAT TATATATTAA 47808 .......... .......... .......... .......... .......... .......... 500 TATTTATTTG CACATATTAA ATTCATAATT TAAATTGCAA TTGACCGCAT GCAAATCAAA 47868 .......... .......... .......... .......... .......... .......... 500 GTCTTCGTCA AATACGACGA GTCGTACACA TGCCTTAAAA TTTGAGGGGC TTATTTTTTT 47928 .......... .......... .......... .......... .......... .......... 500 AGCAATAATA TACTTATAAG TAATTTCAAA AGTAAGTATC ATCTATTTCA ATTTTTAGTT 47988 .......... .......... .......... .......... .......... .......... 500 TAACAGTATA AGATTTAAAT GATTTTTTTA TTTAATTTCA ATTATCATAT CAAGTCAAAA 48048 .......... .......... .......... .......... .......... .......... 500 AATAAGATAA ATAAATGGAA AATTGAAAGT ACTATTTATT GAATAAAAAT AAACTATTTC 48108 .......... .......... .......... .......... .......... .......... 500 ATGTGAAAGA AAAAAAATAA CTTTCCATCA CTTTTTAAGA AATATATTAG TAGCAACTTT 48168 .......... .......... .......... .......... .......... .......... 500 GTATTCTAAA AAAAAATATA GAAGAATGGA CTTTCTTTAA ATTTTAAATA GTACTTATTT 48228 .......... .......... .......... .......... .......... .......... 500 GAATTATAAA ATAATCTCAA TTAATGTTCT ATTTTTTTTC CAAGAGATAT ATTATGGTTT 48288 .......... .......... .......... .......... .......... .......... 500 AAAAATTAAT CCATGATGTG GAAAAATGAT CAGGAAATTT TCCCACAAAC CACTATATAA 48348 .......... .......... .......... .......... .......... .......... 500 CTTCTTCTTT TCTGTACTTT TGAATTCGAT TAAATTAAAA ATTTTGTTAA AAAATTCAAA 48408 .......... .......... .......... .......... .......... .......... 500 TTGAAGATAT AACTTTCAAC TTTAATGAAA ATTTTAGATC AACATTTAAA TTTGAGATTA 48468 .......... .......... .......... .......... .......... .......... 500 CTGGAAAAAA AATTGGCATG TATTACTTAT GTAATAATAG TTATTAACTA TTTGTTTTAG 48528 .......... .......... .......... .......... .......... .......... 500 AATTATCAAA ATTCCAGTAT AATTAGGTGA TTCTTTTTTG GGACATTGTG GGGTTTCAAC 48588 .......... .......... .......... .......... .......... .......... 500 TTTCAATTTA CAAGACTAGC AAGACTTGCT GTTGATAGGT TAGAAAAGTC TTTGTAAGAA 48648 .......... .......... .......... .......... .......... .......... 500 ATGAATTGTA TTATTTTTCA AAAAAATTAT AATATAAAAG AAGATATAAA TACATGTGTA 48708 .......... .......... .......... .......... .......... .......... 500 ATGATATATT ATCTAATTAA AATAATAAGT ATTTTAAAGT TAAAGTATAT TACTAAATAT 48768 .......... .......... .......... .......... .......... .......... 500 AAAAAAGATA TTTATCATTT ATTCAAAACT GATTAAAGAA AATCACATAA ATTAAAATGA 48828 .......... .......... .......... .......... .......... .......... 500 AAGAAATACA GCCTTATTTT CTCAAATTAG TGGAAATAGT TAAAATTTGA ATTTGAAATA 48888 .......... .......... .......... .......... .......... .......... 500 ATGACATTGC AAACCCGTAT TGTATATATA ATATATCAAA AAGCTATATA CCTATAGGGA 48948 .......... .......... .......... .......... .......... .......... 500 AATATAATTA ATATATAAAT TTTTCTCGTC AAGTAAAAAA GTGTTAATAC ATATCTTAAT 49008 .......... .......... .......... .......... .......... .......... 500 ATATAGATAT TCATTCAAAT TCAAATGTCT TAATTTTAAG GAAAGTATTA GAAACAATTA 49068 .......... .......... .......... .......... .......... .......... 500 AATGCTTACA ACTAAACGAA ACAAAAAATT CAATCTGTCG GTGGCATTTA CTGACACTAA 49128 .......... .......... .......... .......... .......... .......... 500 AAGGGAATAA TTAGAAATGT TCATTTTTTA AAAAATAAAA TAAAAATAGA AATCTCCTAT 49188 .......... .......... .......... .......... .......... .......... 500 AACCAAAAAC GACATTTTCT ATTAATTTAC CCTTTATATA TTTTTTATCA CTTTTAAAAC 49248 .......... .......... .......... .......... .......... .......... 500 ACAATCCTAA TTTTTAGGGA AAAAATAAAT TAATTCTTCA TATCTTGATT TTTAAATTGA 49308 .......... .......... .......... .......... .......... .......... 500 CTAGGATTTT AAAATGAACT TTGTCTTTAA TAATGTTGAT AATTAATATG AGACAAAGTC 49368 .......... .......... .......... .......... .......... .......... 500 GGAGAATACT TAATGGCTTT AGTCATGTTG CTCAGAAAGA AATGTTTAAT TAGTTATATA 49428 .......... .......... .......... .......... .......... .......... 500 CTACGGAAAA GGGTTAAAAT ATTCTTAAAC TATCAGAAAT AGATTTACCC TTAAATTATA 49488 .......... .......... .......... .......... .......... .......... 500 TTTTGATTTA AAACTATTTT TCTATCAAAT TATTGGGTCA AAAATACCCT TCTTATTTTT 49548 .......... .......... .......... .......... .......... .......... 500 TTTACCCTTT TCCGTATATA TTTTTAAAAA AGACATTTTG ATGAAAATTT TTAGAAATTG 49608 .......... .......... .......... .......... .......... .......... 500 GAGCAAAAAG CATTAGATGA TCATAATAAT ACATATTGCA AATATTTGAC TGCAAAGCTA 49668 .......... .......... .......... .......... .......... .......... 500 AGTCTTTGTC AATAATAAAT ATGAAGCTAT TGCAATTTGT GGTCCTCATG CATTGGAAAT 49728 .......... .......... .......... .......... .......... .......... 500 AGTATGCATA GCCTTTTAAT TAAGATGTAC ATTGAGTTAC ATAGCTGGAA AGTCGTCGTT 49788 .......... .......... .......... .......... .......... .......... 500 TATTAAGAGT GTTTTATTTA TTAATGTGAA TTTTTTAAAT ACAAATTTAT ATTTAATCGA 49848 .......... .......... .......... .......... .......... .......... 500 GATTTAATAT GAATAATTAA ACACCAAAAT TTAAATTTAA GAAGGTACAA TAATTTACCC 49908 .......... .......... .......... .......... .......... .......... 500 CTCCTTTTGT TTTTAACTAG CTAGATCGAA TTGTATATAT AGGTAATCAT AATATTCAAA 49968 .......... .......... .......... .......... .......... .......... 500 TTGTGCAATA TTTGACTGTG TATAGCTAAG TGGTCAATTT ATAGTTGGTC GTCATCACTA 50028 .......... .......... .......... .......... .......... .......... 500 GAACTTTATA GCCTTTTAAC TCTTCTTTGA AAAATTAAAT TGATTAGAAT ACTTTAAAGA 50088 .......... .......... .......... .......... .......... .......... 500 AATTAATTTA ATTTCATGTG AAAAAGTAAT TTTAAGCCAC TTAATTAATT TCATGTACTT 50148 .......... .......... .......... .......... .......... .......... 500 AATAATGGGA ACGAGGAATA TAAAATTATA TTGGGTGAAG CTTCCACAAA GAGAATCCTT 50208 .......... .......... .......... .......... .......... .......... 500 AATATTATAA TATTATATAA TACTTTTTGT TCTGAATTAA ATCTCGATGA TTTTTAAAAT 50268 .......... .......... .......... .......... .......... .......... 500 AAAATCTAGC TCGCTTAATT AAGAGTGTTC ATAATGTTAA TCGTAACTTC TCTTACTTTT 50328 .......... .......... .......... .......... .......... .......... 500 CAATTATATG GCAAATGTGA AGTTTTGCAC AACTAGAAAG CAATCTCCTT CTCGAATTAA 50388 .......... .......... .......... .......... .......... .......... 500 GTTTCATGTA TGCATGACTT ACCACTTTAT TCCTCGAATA ATTTTACATA GCTCATCACT 50448 .......... .......... .......... .......... .......... .......... 500 AAAATCGTCG ATTCATGTGT TGAAATGGAT ATTAATTATC TGTCACGTAT AGTTTTCAAA 50508 .......... .......... .......... .......... .......... .......... 500 TATTTATGAT CATCGAAGTC CATATATAAT GCAAGCTCCT ATTATTATTA ATTTTTGTCT 50568 .......... .......... .......... .......... .......... .......... 500 AGCTTTTCAT AGAGGGTGAA AGACGGATCA GACTCAATAC CATGCATCTT CATACTCATC 50628 .......... .......... .......... .......... .......... .......... 500 TCGTCAAAAG CTATTAACTT AAACCTTGAG GGAAACTTAA AAGTGACCAA ATCATCATAA 50688 ||||||| |||||||||| .......... .......... .......... .......... ...TGACCAA ATCATCATAA 517 AGATATTCTT TATTTTCCTT TTATTCATCA CAAACTAAGG AACTACATAG TACTTCCATA 50748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATTCTT TATTTTCCTT TTATTCATCA CAAACTAAGG AACTACATAG TACTTCCATA 577 TTATCACTAT ATATATGATG AATAAAAACA TCATATTTTT CCTTGACTTA GTAATTAATC 50808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCACTAT ATATATGATG AATAAAAACA TCATATTTTT CCTTGACTTA GTAATTAATC 637 CTCCTAGCAA GGAGAATAAC ATAGCCTTAT TCAAATTATT AATACAAAAG GATATATAGA 50868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTAGCAA GGAGAATAAC ATAGCCTTAT TCAAATTATT AATACAAAAG GATATATAGA 697 hqPGS_C08HBa0235H18.1+_SGN-U312318- (50672 50868) ******************************************************************************** EST sequence 33 -strand 1241 n (File: SGN-U312323-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTATCATA AAGATATTTC TTTATTTTCC 61 TTTTATTTAT CACAAACTAA GGAACTACAT AGTACTTCCA TAATATCATT ATATATATGA 121 TGAATAAAAA CATCATATTT TTCCTTGACT TAGTAATTAA TCCTCCTAGC TAGGAGAATA 181 ACATAGCCTT ATTCAAATTA TTAATACAAA AGGATATATA GATAGACGGA TAGACATTTA 241 AGGACAGAAC ACAACCCTAT AATTAGTACC AGCAGGGCAA GTGAAAGTAC TAGTTTGATC 301 ATCCTTTGGG TAACTATATG CATCAGGACA CCTCTCCTTA AAAAATCTCG AAAATGTAGT 361 CGGACCACAG TTACCAGAGT TACAACAATA TTGATCGGTC TTAAAAACAG TACAAGGATT 421 GTTACATCCT CCGGGAGCCT TCAATTCATT AGGACATTGT TGATTAATTT CCGCTTTACA 481 CGTTATGCCA CGGGTGCACC CATTGGAAGT TGGACTAAAT TCCATAGGAA CATTAAATCC 541 ATCGACAAGA GAAATATCGA AAAAATCTTT ATTTGCAAAT TGGTTTAGGG CATATTCAGC 601 TAATGTATTT GGTGGTACAC CAAAAGATTT ACATACAAGA AGACCATTAC AATCTCCAGT 661 TTGGCATTTT CCCTTACCGG ATGCATCGAA ATTGCATCCG GTACGGCCCC AAACTCGAGC 721 TTGTTTAGTC CCCGGAGGGG CGTTTATCGT CCACGTTTGG CCACGATCGA GGCGTTTGCC 781 GCCTCCGGCT GGGACTCCGG CAGCCCAAAC GGTGTAGGGA CAATTGTTAC GAACTAAAAT 841 TGTGGCTGCA TTGGCATAGG TGACAAAAAG GGAAAAGAGA ATAAAAATTG AAGTTTTCAT 901 ATTTTTATTT TTTGTGTGAC CACTAATAAA TTGGCCTCGT CCAATTCGGC ACGAGGGTTT 961 TTTTTTTTTT TTTTTTTTTT TCCACAAAAT TAGAGTATTC TATATGGACA AGTCCCAGTT 1021 AGATTTAAAA TGTATAGTGA TAGTATTCGA AAGAAGAGTT AACTAACAAT ATATAGAAAC 1081 ATAAGAGTCT TTGCCAGATG TTCCTTCTTT AGCAGGCATA AAGTAAATAC TTCATCTATA 1141 CAATCTTTGA CGTATAAAGT GTTGAAAGCT AATGAAACTG GTGACAGGAG AAATGGAAGA 1201 ATGGGTCAGA TATCAAGGAT AAAATTTCTA CAGACAGTTC A Predicted gene structure (within gDNA segment 49614 to 55376): Exon 1 50682 51580 ( 899 n); cDNA 35 934 ( 900 n); score: 0.981 PPA cDNA 34 1 MATCH C08HBa0235H18.1+ SGN-U312323- 0.981 899 0.724 C PGS_C08HBa0235H18.1+_SGN-U312323- (50682 51580) Alignment (genomic DNA sequence = upper lines): ATCATAAAGA TA-TTCTTTA TTTTCCTTTT ATTCATCACA AACTAAGGAA CTACATAGTA 50740 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ATCATAAAGA TATTTCTTTA TTTTCCTTTT ATTTATCACA AACTAAGGAA CTACATAGTA 94 CTTCCATATT ATCACTATAT ATATGATGAA TAAAAACATC ATATTTTTCC TTGACTTAGT 50800 |||||||| | |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATAAT ATCATTATAT ATATGATGAA TAAAAACATC ATATTTTTCC TTGACTTAGT 154 AATTAATCCT CCTAGCAAGG AGAATAACAT AGCCTTATTC AAATTATTAA TACAAAAGGA 50860 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAATCCT CCTAGCTAGG AGAATAACAT AGCCTTATTC AAATTATTAA TACAAAAGGA 214 TATATAGATA GGCAGATAGA TATTTAAGGA CAGAATACAA CCCTATAATT AGTACCAGCA 50920 |||||||||| | | |||||| ||||||||| ||||| |||| |||||||||| |||||||||| TATATAGATA GACGGATAGA CATTTAAGGA CAGAACACAA CCCTATAATT AGTACCAGCA 274 GGGCAAGTGA AAGTACTAGT TTGATCATCC TTAGGGTAAC TATATGCATC AGGACACCTC 50980 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GGGCAAGTGA AAGTACTAGT TTGATCATCC TTTGGGTAAC TATATGCATC AGGACACCTC 334 TCCTTAAAAA ATCTCGAAAA TTTAGTCGGA CCACAGTTAC CAGAGTTACA ACAATATTGA 51040 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TCCTTAAAAA ATCTCGAAAA TGTAGTCGGA CCACAGTTAC CAGAGTTACA ACAATATTGA 394 TCAGTCTTAA AAACAGTACA AGGGTTGTTA CATCCTCCGG GAGCTTTCAA TTCATTAGGA 51100 || ||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| TCGGTCTTAA AAACAGTACA AGGATTGTTA CATCCTCCGG GAGCCTTCAA TTCATTAGGA 454 CATTGTTGAT TAATTTCCGC TTTACACGTT ATGCCACGGG TGCACCCATT GGAAGTTGGA 51160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTGAT TAATTTCCGC TTTACACGTT ATGCCACGGG TGCACCCATT GGAAGTTGGA 514 CTAAATTCCA TAGGAACATT AAATCCATCG ACAAGAGAAA TATCGAAAAA ATCTTTATTT 51220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAATTCCA TAGGAACATT AAATCCATCG ACAAGAGAAA TATCGAAAAA ATCTTTATTT 574 GCAAATTGGT TTAGGGCATA TTCAGCTAAT GTATTTGGTG GTACACCAAA AGATTTACAT 51280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATTGGT TTAGGGCATA TTCAGCTAAT GTATTTGGTG GTACACCAAA AGATTTACAT 634 ACAAGAAGAC CATTACAATC TCCAGTTTGG CATTTTCCCT TACCGGATGC ATCGAAATTG 51340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAAGAC CATTACAATC TCCAGTTTGG CATTTTCCCT TACCGGATGC ATCGAAATTG 694 CATCCGGTAC GGCCCCAAAC TCGAGCTTGT TTAGTCCCCG GAGGGGCGTT TATCGTCCAC 51400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCGGTAC GGCCCCAAAC TCGAGCTTGT TTAGTCCCCG GAGGGGCGTT TATCGTCCAC 754 GTTTGGCCAC GATCGAGGCG TTTGCCGCCT CCGGCTGGGA CTCCGGCAGC CCAAACGGTG 51460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGGCCAC GATCGAGGCG TTTGCCGCCT CCGGCTGGGA CTCCGGCAGC CCAAACGGTG 814 TAGGGACAAT TGTTACGAAC TAAAATTGTG GCTGCATTGG CATAGGTGAA AAAAAGGGAA 51520 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TAGGGACAAT TGTTACGAAC TAAAATTGTG GCTGCATTGG CATAGGTGAC AAAAAGGGAA 874 AAGAGAATAA AAATTGAAGT TTTCATATTT TTATTTTTTG TGTGACTACT AATAAATTGG 51580 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AAGAGAATAA AAATTGAAGT TTTCATATTT TTATTTTTTG TGTGACCACT AATAAATTGG 934 hqPGS_C08HBa0235H18.1+_SGN-U312323- (50682 51580) ******************************************************************************** EST sequence 54 -strand 858 n (File: SGN-U343956-) 1 GATAAAGGAG AGGAGAAATA AAAAAGGATT AAATATAACA AAAGAGAAAA TAAAATATGA 61 AGGATGGGAA TAGAAAAAGA AATCAAGGAA TATAAAGAAA TAGAACAAAA TAAAAAAAAA 121 AGAGGAAAAT GAAATAAGTA AAAACTAAAA GAGAAGGAAA GATTAGAAAA AGAATACGGA 181 AAAAAAAGTG TAATAAGAGA GAGAGGAGTA AGAGAAAGAA AGAATAGAAA CAAGAAATAA 241 AAAGGAAAAG AATAGTAACC ATGATAAGAT AAAAAAGAGA AAAAAATAGT GATAAGAAAA 301 TAGAAGAAAA GAAAAAAAAA AGGAATAGGA TAAAAAAAAA ATGGACTAAG AAGAATAAAT 361 AATAAAAGGA CTGATATAAT AAAGAAATAT AATAGCAAGA ATAAAGAGAA TTCTAAAAAG 421 AAAGACATAT GTAAAAAACC AGTGAAGCAA TGAACATATT GGAAAAACAC TTGACAAAAA 481 GTACCATACC AAAGATGAAA TATTAATAAA AAAACTTCGC AAAAGGTATA GAACTATATA 541 TGACAAACAT GTAAACTTGA TTAGGGTAAA ATTCTCGTTT CAATTCTATG TGGATGTACA 601 CTCCGAAAAA CTGTTTTTCC CTGTCCTATT TCAGAAGTCT AGGATTGGTT TTGTAAATAT 661 GCATTTTAAC TCAATTTCAC ATCTGTTCAA AAAATGCGTT CCTAGTGTTT CTGCCATGGA 721 TAAATAAGGT GAAAAATAGT TCCAGTCAAA AAAAAAAAAA AAAAACTCGA GAGTACTTCT 781 AGAGCGGCCG CGGGCCCATC GATTTTCCAC CCGGCTGGGG TACCAGGTAG ATGTACCAAT 841 CGCCGTATGG ACCTCTTC Predicted gene structure (within gDNA segment 56184 to 64137): Exon 1 59751 59760 ( 10 n); cDNA 369 377 ( 9 n); score: 0.900 Intron 1 59761 60396 ( 636 n); Pd: 0.895 (s: 0), Pa: 0.000 (s: 0) Exon 2 60397 60419 ( 23 n); cDNA 378 397 ( 20 n); score: 0.739 Intron 2 60420 61973 (1554 n); Pd: 0.900 (s: 0), Pa: 0.977 (s: 0.60) Exon 3 61974 62313 ( 340 n); cDNA 398 741 ( 344 n); score: 0.866 MATCH C08HBa0235H18.1+ SGN-U343956- 0.866 373 0.435 C PGS_C08HBa0235H18.1+_SGN-U343956- (59751 59760,60397 60419,61974 62313) Alignment (genomic DNA sequence = upper lines): GACTGATAAT GCAATTAAAA ATCATTGGAA TTCCACTCTG AAGAAAAGAT TGAATTTGAA 59810 ||||||| || GACTGAT-AT .......... .......... .......... .......... .......... 377 TTTACTAAGT AGGTTAGTGC CGGATATCAA AAGTGAGGGA TCTCCGGACT TCTCAACTCA 59870 .......... .......... .......... .......... .......... .......... 377 CAAGAAAAAT ATGGAAATCA AGAAGCATCC AACACAGGCT CATAATGCAG AAACAGTCTT 59930 .......... .......... .......... .......... .......... .......... 377 TTTGAGCGAG CAAACAGGAG TAGGTAATGC TGCTGATGCT TGCCCAACTG ATTTGAGGAT 59990 .......... .......... .......... .......... .......... .......... 377 TGGATCTGCT AATTCTCCTC AAAATGGTTT GCATAAGGGT ACTTCTTCAT TGGGAACCTG 60050 .......... .......... .......... .......... .......... .......... 377 TAAATCATCA GAACAGAAGG AGAGGGATCT GATAAAGCAA TTTGGTGGAA TACAATTTGT 60110 .......... .......... .......... .......... .......... .......... 377 CAAGGCAGAA ATTCTTCCAA TAGGTGAGAC AGATAAACAA TGCCAATCCA CTTTAAGTCT 60170 .......... .......... .......... .......... .......... .......... 377 CACTAAAATA TCATATCCTC TGTTGGACTC TTCTTTAGAT GCTCGTTTGG ATCCATCACA 60230 .......... .......... .......... .......... .......... .......... 377 CAACACCGGA TGGAGTAGTT CTCAAGTTGA GGCTGTTCGT CCTACTTCTT TTGGGAGTAT 60290 .......... .......... .......... .......... .......... .......... 377 GTATGAATCT CCCAAAAGGT CTAGGTACGA TGCTGCCAAT GATCCTGACC ATGATTTCTT 60350 .......... .......... .......... .......... .......... .......... 377 GAGTTTGTCA TTGGCTGCCT TCACCGAGGT TTCCTACGGT AACAAGAAAA ACAGAACATA 60410 || | | |||| ||| .......... .......... .......... .......... ......AATA A-AGAA-ATA 389 TGATACACAA TATTCTTTGG CTCTCAATCA GCCTGGCCGC TTGTGTTATG AACCACCAAA 60470 | ||| || TAATA-GCA. .......... .......... .......... .......... .......... 397 AGTAAAAGAC CTGATGATTT CTTCAATGGA TGAAAAACTT AGTAAAGACA ACTTTATCGG 60530 .......... .......... .......... .......... .......... .......... 397 GCAACATCAT GGCCATCCAC TTTGCTCTAC ACCTCCTAGT CTTAAGTTAA CAGTCTCTGC 60590 .......... .......... .......... .......... .......... .......... 397 TAATGGTAGC AGTCCAGAAT CTGTGTTAAG GAACTCCGCA ATGAGCTACA CAAAAACTCC 60650 .......... .......... .......... .......... .......... .......... 397 TTCAATCATA AGGAAGAAGA ATTCAAGAAT TGCAGAAGCT TCTGGTCATT CTAGTTGCAC 60710 .......... .......... .......... .......... .......... .......... 397 AGGCAGTACC ACACCCATGC ATTTTCTCGG GAGTGTACCT GACAGGGAAG ACTCCTCAAA 60770 .......... .......... .......... .......... .......... .......... 397 CCTGAAGGAC AGGATTTCTG GATGTAAAAG ATCAGTTTCC GGAAAATCCC TTGGAAGACG 60830 .......... .......... .......... .......... .......... .......... 397 GTTGGAATAT GCCTTTGATG TGGAATGGGA TTCCTCTAGA TCTTGCACAC CAGTTTCTGC 60890 .......... .......... .......... .......... .......... .......... 397 AGTTCCACCT TGTGGACTTA CTCTTGGTGC TAATACAATG TTAACACCAT AAAACAGGTA 60950 .......... .......... .......... .......... .......... .......... 397 AGTGAGGCAT TTTCTTTTTT AGATTTTCCT TTATTTCAGC TTCTTCCTGC GCAGTTAGAC 61010 .......... .......... .......... .......... .......... .......... 397 GATTTTTATT ATTTGAGAGC TTGAGCTCTA CATGAGCATC TTTATTGCTG TAGTTCCAGT 61070 .......... .......... .......... .......... .......... .......... 397 TAAAAGAGCA ACTGATCTGA TAAGCCTTAG AAAGATCTTA GCCTAACCGC ATATTTATGG 61130 .......... .......... .......... .......... .......... .......... 397 ATGTGTATAA GTGCATTGCT TTCTGCATTT ATTAGCACTA ATCATAAAGG GTAATTTCTC 61190 .......... .......... .......... .......... .......... .......... 397 ATCAAATTAC CTTGCATCTC TACTCGAACT TTTTAAGATC ATTTATTGGA AGCTAGGGTA 61250 .......... .......... .......... .......... .......... .......... 397 GATTTGAAAA AAAAAATTAA TGCTTTGGTT TTCTAGAGCA ACACTTGTAT GGACCAAATT 61310 .......... .......... .......... .......... .......... .......... 397 GATTTGGCTA AAAGGACATT TATTTTGGAC CAGAGTAGTA AGGGTACTTC TTAGGCTGCT 61370 .......... .......... .......... .......... .......... .......... 397 TGTATTGGAC GACTAGAATA GAAAGCAACT TCAAATTGAT GTTTGACATT GTTTTAGTTA 61430 .......... .......... .......... .......... .......... .......... 397 AATCAATGTA TAAAACAAGG GAACTCGTCA AGATTCTAGC TTGTTTGTCT CAAAGAACCG 61490 .......... .......... .......... .......... .......... .......... 397 TTGAGCCTGC AGGTTTTCAC GGCTTAAACA GACCTGAAGA TGACCTTATG GTATAACGCT 61550 .......... .......... .......... .......... .......... .......... 397 GAACAAATTT GTTATTTTCA TTGCCTATCC CCTAATGGAT TATTTTTGCA TTTCCTTATT 61610 .......... .......... .......... .......... .......... .......... 397 TGCAAAGCTG ATAATAGTTT ATGGCAGAAG GAGTGAAGTT GTATGTGCAT AGATGTGTTA 61670 .......... .......... .......... .......... .......... .......... 397 AATGTTTATG GGAATATTTG ACCATTCTGC AAAGAGCGAC GTCACATGTT TCCGCCTAAA 61730 .......... .......... .......... .......... .......... .......... 397 TGTTCATCTT TACTCCATCT GAACTAGTTT TGATCTAATC CTGCATTCTA CTTCAGACTA 61790 .......... .......... .......... .......... .......... .......... 397 TATTTGTATT TTTTCTGTTG TAATTCTCTT TTTTGATTTT AGGATTGAGC TGCAGAGGAT 61850 .......... .......... .......... .......... .......... .......... 397 TTGTCTGGGG AAGCTTTTGT TGTAGATTAC AAGCAGGTAA ATTTTTATCA TCTTCTCACA 61910 .......... .......... .......... .......... .......... .......... 397 GTTGTTTCAC GATTATTGCT AGTGCTCCTA TTTGTATATC AATTGATCAA TTCCAAATTG 61970 .......... .......... .......... .......... .......... .......... 397 CAGTGTCAAA CAGAAAACTC T-CAACGCAT GTCAATTTTC AAAGACCAGT GAAGCAATG- 62028 | | | ||| || || | || | | | || | | ||| |||||| ||||||||| ...AG-AATA AAGAGAATTC TAAAAAGAAA GACATATGTA AAAAACCAGT GAAGCAATGA 453 ACATA-TGCC CAAACACTTG AC-AGAAGT- CCATACCGGA GCTGAAGAAT TAATGAGAAA 62085 ||||| || ||||||||| || | |||| ||||||| | | |||| || |||| | ||| ACATATTGGA AAAACACTTG ACAAAAAGTA CCATACCAAA GATGAAATAT TAATAAAAAA 513 ACATCGCGAA AGGTATAAAA CTATATATGA CAAACATGTA AACTTGATTA GGGTAAGATT 62145 || |||| || ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| ACTTCGCAAA AGGTATAGAA CTATATATGA CAAACATGTA AACTTGATTA GGGTAAAATT 573 CTCGTTTCAA TTCTATGTGG ATGTACACTC CGAAAAACTG TTTTTCCCTG TCCTATTTCA 62205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTTTCAA TTCTATGTGG ATGTACACTC CGAAAAACTG TTTTTCCCTG TCCTATTTCA 633 GAAGTCTAGG ATTGGTTTTG TAAATATGCA TTTTAACTCA ATTTCACATC TGTTCAAAAA 62265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCTAGG ATTGGTTTTG TAAATATGCA TTTTAACTCA ATTTCACATC TGTTCAAAAA 693 ATGCGTTCCT AGTGTTTCTG CCATGGATAA ATAAGGTGAA AATTAGTT 62313 |||||||||| |||||||||| |||||||||| |||||||||| || ||||| ATGCGTTCCT AGTGTTTCTG CCATGGATAA ATAAGGTGAA AAATAGTT 741 hqPGS_C08HBa0235H18.1+_SGN-U343956- (60397 60419,61974 62313) ******************************************************************************** EST sequence 21 +strand 1510 n (File: SGN-U315600+) 1 TTTTTTTCAA GAAGAGTCTT GATTTGCTCA AAACTTTTTC CCTTTTTCTT CACGTATCTT 61 CTACAACTAA AAAGAAAGAA CCCCTTTTTT TCTGATTTTC CATAAAAATT GGTTCTTGAA 121 AGGATAAAGA TTGAATCTTT GTTGTGTTTT ATGAAATGGG TGTTCAGTGT CAAGAAAATA 181 TTTTGGTGAC TGGAGGAGCT GGTTTCATTG GAACACATAC TGTGGTGCAG TTACTGAATG 241 AAGGGTTCAA AGTTACAATC ATTGATAACT TTCATAATTC TGTGAAAGAA GCTGTTGATA 301 GAGTCAGAGA ATTAGTTGGT CCTCAACTTT CACAGAATCT TGAATTCCAT TTGGGTGATA 361 TTAGAAACAG AGATGACTTG GAGAAGCTAT TTTCTAAGAA AGAGTTTGCT GCTGTGGTCC 421 ATTTTGCTGG GCTTAAGGCT GTTGGAGAGA GTGTTGTTCA GCCCTTCCTT TACTTTGAGA 481 ACAATCTGAT TGGATCAATA ACTTTGTATT CAGTCATGGC CAAGTATAAT TGTAAGAAGT 541 TGGTTTTTTC ATCATCTGCA ACAGTTTATG GTCAGCCTGA AAAGGTTCCC TGTGTGGAGG 601 ATTTTGAATT GAAGGCTATG AATCCTTATG GTCGAACAAA GCTATTTCTT GAAGATATTG 661 CACGGGATAT CCAGAAGGCT GATCAAGAAT GGAATATCAT ACTGTTGAGG TATTTCAACC 721 CGGTAGGAGC TCATGAAAGT GGCAAACTCG GGGAAGATCC AAAGGGCATT CCGAACAATC 781 TTATGCCTTA CATTCAGCAA GTAGCTGTTG GTAGATTGCC GGAGTTGAAT GTATATGGCA 841 ACGACTACCC TACACCTGAT GGTACCGCGA TACGAGATTA TATCCATGTT ATGGATTTGG 901 CGGACGGTCA TGTTGTTGCA CTTCAGAGAC TTCTAAGGCA GAATCACATA GGTTGTGTTG 961 CCTACAATTT GGGTACTGGA AAAGGCAAAT CTGTCCTAGA GATGGTTGGT GCCTTTGAAA 1021 AGGCGTCTGG AAAGAAAATC CCGCTTAAAA TGTGTCCAAG AAGACCAGGA GATGCCACTG 1081 CTGTTTACGC ATCTACTGAA AAAGCTGAGA AGGAGCTCGG TTGGAAGGCA AAATATGGGA 1141 TAAATGAGAT GTGCAGGGAC CAGTGGAAAT GGGCAAGCCA AAATCCTTGG GGTTACCAAC 1201 CAAAGCCTTG ATATGTTATA ATAATAATAA TAATAATACA AGTAGCACTT GGAGTACAAA 1261 ACTGTAGTCA ACATCCTAGT ACTTTACATT TCATGCAAAC ATTAGATGTA TCCAAGGACA 1321 AAAGTGTTCA TCCATAATAG TTGTTGATGG TTATGTACTA CTAAACCCTG TTGTTGTCTC 1381 CCTTAAAGGT TTTATGGGAA CTTGAATGTT CATCCTATTA TGATCCCTTC AACCAAATCT 1441 CTTTACTGAT TGTAATTCAT TCAAAAAGAG TAAATGATCT AGTCTACTAT GCTAAAAAAA 1501 AAAAAAAAAA Predicted gene structure (within gDNA segment 63670 to 68181): Exon 1 64270 64622 ( 353 n); cDNA 1 353 ( 353 n); score: 1.000 Intron 1 64623 65057 ( 435 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 65058 65107 ( 50 n); cDNA 354 403 ( 50 n); score: 1.000 Intron 2 65108 65217 ( 110 n); Pd: 0.963 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 65218 65353 ( 136 n); cDNA 404 539 ( 136 n); score: 1.000 Intron 3 65354 65652 ( 299 n); Pd: 0.969 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 65653 65754 ( 102 n); cDNA 540 641 ( 102 n); score: 1.000 Intron 4 65755 65869 ( 115 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 65870 66097 ( 228 n); cDNA 642 869 ( 228 n); score: 1.000 Intron 5 66098 66386 ( 289 n); Pd: 0.982 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 6 66387 66468 ( 82 n); cDNA 870 951 ( 82 n); score: 1.000 Intron 6 66469 66623 ( 155 n); Pd: 0.998 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 7 66624 66706 ( 83 n); cDNA 952 1034 ( 83 n); score: 1.000 Intron 7 66707 66801 ( 95 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 8 66802 66893 ( 92 n); cDNA 1035 1126 ( 92 n); score: 1.000 Intron 8 66894 67043 ( 150 n); Pd: 0.997 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 9 67044 67410 ( 367 n); cDNA 1127 1493 ( 367 n); score: 1.000 PPA cDNA 1494 1510 MATCH C08HBa0235H18.1+ SGN-U315600+ 1.000 1493 0.989 C PGS_C08HBa0235H18.1+_SGN-U315600+ (64270 64622,65058 65107,65218 65353,65653 65754,65870 66097,66387 66468,66624 66706,66802 66893,67044 67410) Alignment (genomic DNA sequence = upper lines): TTTTTTTCAA GAAGAGTCTT GATTTGCTCA AAACTTTTTC CCTTTTTCTT CACGTATCTT 64329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTCAA GAAGAGTCTT GATTTGCTCA AAACTTTTTC CCTTTTTCTT CACGTATCTT 60 CTACAACTAA AAAGAAAGAA CCCCTTTTTT TCTGATTTTC CATAAAAATT GGTTCTTGAA 64389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACAACTAA AAAGAAAGAA CCCCTTTTTT TCTGATTTTC CATAAAAATT GGTTCTTGAA 120 AGGATAAAGA TTGAATCTTT GTTGTGTTTT ATGAAATGGG TGTTCAGTGT CAAGAAAATA 64449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATAAAGA TTGAATCTTT GTTGTGTTTT ATGAAATGGG TGTTCAGTGT CAAGAAAATA 180 TTTTGGTGAC TGGAGGAGCT GGTTTCATTG GAACACATAC TGTGGTGCAG TTACTGAATG 64509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGTGAC TGGAGGAGCT GGTTTCATTG GAACACATAC TGTGGTGCAG TTACTGAATG 240 AAGGGTTCAA AGTTACAATC ATTGATAACT TTCATAATTC TGTGAAAGAA GCTGTTGATA 64569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTTCAA AGTTACAATC ATTGATAACT TTCATAATTC TGTGAAAGAA GCTGTTGATA 300 GAGTCAGAGA ATTAGTTGGT CCTCAACTTT CACAGAATCT TGAATTCCAT TTGGTATGAT 64629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| GAGTCAGAGA ATTAGTTGGT CCTCAACTTT CACAGAATCT TGAATTCCAT TTG....... 353 TTTTTTTTCA ATCTTTTTTA TTTTTTATCA AACCCGACAT ACACCCTTTT TCTAAAAGCA 64689 .......... .......... .......... .......... .......... .......... 353 CAAATTGTGG GTGGGGGGGG GGGGGGGGAG AAGGAAGGAA ATGTGAAAAA AATGAGCTTT 64749 .......... .......... .......... .......... .......... .......... 353 TGAGATGATC ATGTGTGTGT TTTGTAGTCA TTGAATGTTT AAGGCTCCAT CATTAGCTTT 64809 .......... .......... .......... .......... .......... .......... 353 TTGTGTCATT GTGTGTGTGT TTTTCATTGC TGCCTTGTAT CGTGTTGTTA TCATTTTCTT 64869 .......... .......... .......... .......... .......... .......... 353 AAAAAAGTTA TCTTTATTTT ATTTTATAGG AATCTTGATA GCTCTGTGAT TGTACAACTA 64929 .......... .......... .......... .......... .......... .......... 353 GTTCTTTTTA ATCCTATTTT TTTTTTTTGT GAAATGAATG TTGATCTTAC ATACCTTGTA 64989 .......... .......... .......... .......... .......... .......... 353 TTCACAATGC TAGAATTGTG TTTTTTCACC TTATCTGGGA TTTTACCTTT GTTGCTTCTT 65049 .......... .......... .......... .......... .......... .......... 353 GGTGGCAGGG TGATATTAGA AACAGAGATG ACTTGGAGAA GCTATTTTCT AAGAAAGAGT 65109 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ........GG TGATATTAGA AACAGAGATG ACTTGGAGAA GCTATTTTCT AAGAAAGA.. 403 ATGAAAATTT TCTTGTTTTC AAATTATCTC CTGCTGTTAT TATTTCCTTT GAATGCATTT 65169 .......... .......... .......... .......... .......... .......... 403 CTATGGTGTG TTGTGATATT CATTGTTTTG TTATATATAT TGAAATAGGT TTGCTGCTGT 65229 || |||||||||| .......... .......... .......... .......... ........GT TTGCTGCTGT 415 GGTCCATTTT GCTGGGCTTA AGGCTGTTGG AGAGAGTGTT GTTCAGCCCT TCCTTTACTT 65289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCATTTT GCTGGGCTTA AGGCTGTTGG AGAGAGTGTT GTTCAGCCCT TCCTTTACTT 475 TGAGAACAAT CTGATTGGAT CAATAACTTT GTATTCAGTC ATGGCCAAGT ATAATTGTAA 65349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAACAAT CTGATTGGAT CAATAACTTT GTATTCAGTC ATGGCCAAGT ATAATTGTAA 535 GAAGGTACGT CTTTCGATAT AATTTTGGTT TCATATAAGT GAAATATGCT ATGCATTCAG 65409 |||| GAAG...... .......... .......... .......... .......... .......... 539 GGCAAGTTGG AATCTGTTAT GTTCATGATT GCTGCTACCC TTATAGTTTT GGTAGAATTT 65469 .......... .......... .......... .......... .......... .......... 539 GAAGGCTAAT AGTAAACATG GTTCTTCTTT CAAGAACTCA TTTAGCCTCA AGAACATGGG 65529 .......... .......... .......... .......... .......... .......... 539 CGTTGCTAGG GGGCGGAAGG AGGTTCAGTT GTTCATGGTG TGGCGAACTG TTGGATTCGT 65589 .......... .......... .......... .......... .......... .......... 539 AGGAGGGTAT TGAGTAGGTT GGTCAGGTTG ATAACTTTTT AATTTCATTG TGTGAAATTG 65649 .......... .......... .......... .......... .......... .......... 539 CAGTTGGTTT TTTCATCATC TGCAACAGTT TATGGTCAGC CTGAAAAGGT TCCCTGTGTG 65709 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TTGGTTT TTTCATCATC TGCAACAGTT TATGGTCAGC CTGAAAAGGT TCCCTGTGTG 596 GAGGATTTTG AATTGAAGGC TATGAATCCT TATGGTCGAA CAAAGGTTTG TATTGTCAAT 65769 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGGATTTTG AATTGAAGGC TATGAATCCT TATGGTCGAA CAAAG..... .......... 641 AATTGTCTCT TAATTTCATA CTGATTAGAG ATAGTTCATT TGATAGTATC TCAGTCTGTA 65829 .......... .......... .......... .......... .......... .......... 641 AACTATGTGA CCGAACCTGT GTTTTGTTCT ATTTAATTAG CTATTTCTTG AAGATATTGC 65889 |||||||||| |||||||||| .......... .......... .......... .......... CTATTTCTTG AAGATATTGC 661 ACGGGATATC CAGAAGGCTG ATCAAGAATG GAATATCATA CTGTTGAGGT ATTTCAACCC 65949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGGATATC CAGAAGGCTG ATCAAGAATG GAATATCATA CTGTTGAGGT ATTTCAACCC 721 GGTAGGAGCT CATGAAAGTG GCAAACTCGG GGAAGATCCA AAGGGCATTC CGAACAATCT 66009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGGAGCT CATGAAAGTG GCAAACTCGG GGAAGATCCA AAGGGCATTC CGAACAATCT 781 TATGCCTTAC ATTCAGCAAG TAGCTGTTGG TAGATTGCCG GAGTTGAATG TATATGGCAA 66069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCCTTAC ATTCAGCAAG TAGCTGTTGG TAGATTGCCG GAGTTGAATG TATATGGCAA 841 CGACTACCCT ACACCTGATG GTACCGCGGT AGGTTATGTT TGGCTGATTC TTTGTGACTG 66129 |||||||||| |||||||||| |||||||| CGACTACCCT ACACCTGATG GTACCGCG.. .......... .......... .......... 869 TAGCTTCTTT GTATGAGGAA AAAAAAGAAA CTGAATGACT CAACATACCA TCTGTGACTA 66189 .......... .......... .......... .......... .......... .......... 869 GAGTACATAC GAAAGAAACA GAAAATGAAG AGCGAGCAGA AGTTAACAGC CGGAACAACT 66249 .......... .......... .......... .......... .......... .......... 869 TATTGAACTA CTAATAATGA AGAGAAAAGA CAGAAATATA GTTGAATATC CAAATATACT 66309 .......... .......... .......... .......... .......... .......... 869 CATGACATGA ATCACCTTTA ACATATTTTG CTTCTTGTAC TTGACTGTTA AATGATCTTT 66369 .......... .......... .......... .......... .......... .......... 869 AATCTATTTC TCACTAGATA CGAGATTATA TCCATGTTAT GGATTTGGCG GACGGTCATG 66429 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......ATA CGAGATTATA TCCATGTTAT GGATTTGGCG GACGGTCATG 912 TTGTTGCACT TCAGAGACTT CTAAGGCAGA ATCACATAGG TAAGTAATCC TTTTCAAAGC 66489 |||||||||| |||||||||| |||||||||| ||||||||| TTGTTGCACT TCAGAGACTT CTAAGGCAGA ATCACATAG. .......... .......... 951 AAAGTTTAGA TCTGAATTCT TTTGACGTTA GTTCGAGCTA ATGATACCCT TTTGTATGAT 66549 .......... .......... .......... .......... .......... .......... 951 TTTGACATTT CATATATTTC GGTTGAAGGT AACATCTTGT GACATTTGTT CTTCTGTTTA 66609 .......... .......... .......... .......... .......... .......... 951 ATGGTTTGCA TTAGGTTGTG TTGCCTACAA TTTGGGTACT GGAAAAGGCA AATCTGTCCT 66669 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTTGTG TTGCCTACAA TTTGGGTACT GGAAAAGGCA AATCTGTCCT 997 AGAGATGGTT GGTGCCTTTG AAAAGGCGTC TGGAAAGGTC TCTTAACGGA ACACGCTAAA 66729 |||||||||| |||||||||| |||||||||| ||||||| AGAGATGGTT GGTGCCTTTG AAAAGGCGTC TGGAAAG... .......... .......... 1034 CCATACTTAG TAGAATTTGA ACAAAGCAAC AATCTCATAT TATGTTGTAC TAATATATTA 66789 .......... .......... .......... .......... .......... .......... 1034 TTTTTGTTCC AGAAAATCCC GCTTAAAATG TGTCCAAGAA GACCAGGAGA TGCCACTGCT 66849 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..AAAATCCC GCTTAAAATG TGTCCAAGAA GACCAGGAGA TGCCACTGCT 1082 GTTTACGCAT CTACTGAAAA AGCTGAGAAG GAGCTCGGTT GGAAGTAAGT AGTAAATGGT 66909 |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTTACGCAT CTACTGAAAA AGCTGAGAAG GAGCTCGGTT GGAA...... .......... 1126 TATTTTTCTA TTCTTGGATC AACTGATGCT TGTGCCTAGC AGCCTCATAA AGGCTAATCT 66969 .......... .......... .......... .......... .......... .......... 1126 TCTTGCATCT CATTCATTTC ACCAGTTGAA AGAGAAACTG ATGGTGGGAT CAAATCTTTT 67029 .......... .......... .......... .......... .......... .......... 1126 CTACTTCTTT TCAGGGCAAA ATATGGGATA AATGAGATGT GCAGGGACCA GTGGAAATGG 67089 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGCAAA ATATGGGATA AATGAGATGT GCAGGGACCA GTGGAAATGG 1172 GCAAGCCAAA ATCCTTGGGG TTACCAACCA AAGCCTTGAT ATGTTATAAT AATAATAATA 67149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCCAAA ATCCTTGGGG TTACCAACCA AAGCCTTGAT ATGTTATAAT AATAATAATA 1232 ATAATACAAG TAGCACTTGG AGTACAAAAC TGTAGTCAAC ATCCTAGTAC TTTACATTTC 67209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATACAAG TAGCACTTGG AGTACAAAAC TGTAGTCAAC ATCCTAGTAC TTTACATTTC 1292 ATGCAAACAT TAGATGTATC CAAGGACAAA AGTGTTCATC CATAATAGTT GTTGATGGTT 67269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAAACAT TAGATGTATC CAAGGACAAA AGTGTTCATC CATAATAGTT GTTGATGGTT 1352 ATGTACTACT AAACCCTGTT GTTGTCTCCC TTAAAGGTTT TATGGGAACT TGAATGTTCA 67329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTACTACT AAACCCTGTT GTTGTCTCCC TTAAAGGTTT TATGGGAACT TGAATGTTCA 1412 TCCTATTATG ATCCCTTCAA CCAAATCTCT TTACTGATTG TAATTCATTC AAAAAGAGTA 67389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTATTATG ATCCCTTCAA CCAAATCTCT TTACTGATTG TAATTCATTC AAAAAGAGTA 1472 AATGATCTAG TCTACTATGC T 67410 |||||||||| |||||||||| | AATGATCTAG TCTACTATGC T 1493 hqPGS_C08HBa0235H18.1+_SGN-U315600+ (64270 64622,65058 65107,65218 65353,65653 65754,65870 66097,66387 66468,66624 66706,66802 66893,67044 67410) ******************************************************************************** EST sequence 17 +strand 845 n (File: SGN-U335231+) 1 TTTTAGCTGG AGCTCCCCGC GGTGGCGGCC GCCCTACAAC TAGTGGATCC CCCGGGCTGC 61 AGTAAACTTT TTCCCTTTTT CTTCACGTAT CTTCTACAAC TAAAAAGAAA GAACCCCTTT 121 TTTTCTGATT TTCCATAAAA ATTGGTTCTT GAAAGGATAA AGATTGAATC TTTGTTGTGT 181 TTTATGAAAT GGGTGTTCAG TGTCAAGAAA ATATTTTGGT GACTGGAGGA GCTGGTTTCA 241 TTGGAACACA TACTGTGGTG CAGTTACTGA ATGAAGGGTT CGAAGTTACA ATCATTGATA 301 ACTTTCATAA TTCTGTGAAA GAAGCTGTTG ATAGAATCAG AGAATTATTT GGTCCTCTAC 361 TTTCACAGAA TCTTGAATTC CATTTGGGTG GTATTATAAA CAAACATGAC TTGGAGAAGC 421 TATTTTCTTT GAAAAAGAAT GCTGCTGTGG TCCATTTTGC TGGGCTTAAA GCTGTTGGAA 481 AGAAAGATTG TCACCCCTTC CTTTTCTTTG AGAACAATCT GATTGGATAA ATAACTTTGT 541 ATTCAGTCGT GGGCCCGCAT AATTGTTAAA AAAAGGTTTT TTCTTTATCT GCCACGGGTT 601 ATGGATAACC TAAAAAGGAT CCCTGGTTGG GAGGATTTTT AATTGAAAGG TATGGAATCC 661 TTTTGGTCCA ACCAGAGCTT TTTCTTGGAT AAAATTGCCC CGGGAATTCC AGAAAGGTGG 721 ATTCAGAAAG GAAAATTCAT ACCTGCTTGA GGGATTTTCA CCCCGGCAGG AACCTCTTTA 781 AAGGGGCAAA AACTCGGGGA AAAATCAAAA AGGGCATTTT CGAAACAAAT TTTTTTTCCC 841 TTATG Predicted gene structure (within gDNA segment 63070 to 68909): Exon 1 64300 64622 ( 323 n); cDNA 64 386 ( 323 n); score: 0.988 Intron 1 64623 65057 ( 435 n); Pd: 0.981 (s: 0.96), Pa: 1.000 (s: 0.86) Exon 2 65058 65107 ( 50 n); cDNA 387 436 ( 50 n); score: 0.860 Intron 2 65108 65217 ( 110 n); Pd: 0.963 (s: 0.86), Pa: 1.000 (s: 0.88) Exon 3 65218 65353 ( 136 n); cDNA 437 572 ( 136 n); score: 0.853 Intron 3 65354 65652 ( 299 n); Pd: 0.969 (s: 0.82), Pa: 0.983 (s: 0.76) Exon 4 65653 65754 ( 102 n); cDNA 573 677 ( 105 n); score: 0.730 Intron 4 65755 65869 ( 115 n); Pd: 0.999 (s: 0.73), Pa: 0.993 (s: 0.61) Exon 5 65870 66022 ( 153 n); cDNA 678 842 ( 165 n); score: 0.572 MATCH C08HBa0235H18.1+ SGN-U335231+ 0.838 764 0.904 C PGS_C08HBa0235H18.1+_SGN-U335231+ (64300 64622,65058 65107,65218 65353,65653 65754,65870 66022) Alignment (genomic DNA sequence = upper lines): AAACTTTTTC CCTTTTTCTT CACGTATCTT CTACAACTAA AAAGAAAGAA CCCCTTTTTT 64359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTTTTC CCTTTTTCTT CACGTATCTT CTACAACTAA AAAGAAAGAA CCCCTTTTTT 123 TCTGATTTTC CATAAAAATT GGTTCTTGAA AGGATAAAGA TTGAATCTTT GTTGTGTTTT 64419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGATTTTC CATAAAAATT GGTTCTTGAA AGGATAAAGA TTGAATCTTT GTTGTGTTTT 183 ATGAAATGGG TGTTCAGTGT CAAGAAAATA TTTTGGTGAC TGGAGGAGCT GGTTTCATTG 64479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAATGGG TGTTCAGTGT CAAGAAAATA TTTTGGTGAC TGGAGGAGCT GGTTTCATTG 243 GAACACATAC TGTGGTGCAG TTACTGAATG AAGGGTTCAA AGTTACAATC ATTGATAACT 64539 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GAACACATAC TGTGGTGCAG TTACTGAATG AAGGGTTCGA AGTTACAATC ATTGATAACT 303 TTCATAATTC TGTGAAAGAA GCTGTTGATA GAGTCAGAGA ATTAGTTGGT CCTCAACTTT 64599 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| |||| ||||| TTCATAATTC TGTGAAAGAA GCTGTTGATA GAATCAGAGA ATTATTTGGT CCTCTACTTT 363 CACAGAATCT TGAATTCCAT TTGGTATGAT TTTTTTTTCA ATCTTTTTTA TTTTTTATCA 64659 |||||||||| |||||||||| ||| CACAGAATCT TGAATTCCAT TTG....... .......... .......... .......... 386 AACCCGACAT ACACCCTTTT TCTAAAAGCA CAAATTGTGG GTGGGGGGGG GGGGGGGGAG 64719 .......... .......... .......... .......... .......... .......... 386 AAGGAAGGAA ATGTGAAAAA AATGAGCTTT TGAGATGATC ATGTGTGTGT TTTGTAGTCA 64779 .......... .......... .......... .......... .......... .......... 386 TTGAATGTTT AAGGCTCCAT CATTAGCTTT TTGTGTCATT GTGTGTGTGT TTTTCATTGC 64839 .......... .......... .......... .......... .......... .......... 386 TGCCTTGTAT CGTGTTGTTA TCATTTTCTT AAAAAAGTTA TCTTTATTTT ATTTTATAGG 64899 .......... .......... .......... .......... .......... .......... 386 AATCTTGATA GCTCTGTGAT TGTACAACTA GTTCTTTTTA ATCCTATTTT TTTTTTTTGT 64959 .......... .......... .......... .......... .......... .......... 386 GAAATGAATG TTGATCTTAC ATACCTTGTA TTCACAATGC TAGAATTGTG TTTTTTCACC 65019 .......... .......... .......... .......... .......... .......... 386 TTATCTGGGA TTTTACCTTT GTTGCTTCTT GGTGGCAGGG TGATATTAGA AACAGAGATG 65079 || || ||||| | |||| | ||| .......... .......... .......... ........GG TGGTATTATA AACAAACATG 408 ACTTGGAGAA GCTATTTTCT AAGAAAGAGT ATGAAAATTT TCTTGTTTTC AAATTATCTC 65139 |||||||||| |||||||||| |||| | ACTTGGAGAA GCTATTTTCT TTGAAAAA.. .......... .......... .......... 436 CTGCTGTTAT TATTTCCTTT GAATGCATTT CTATGGTGTG TTGTGATATT CATTGTTTTG 65199 .......... .......... .......... .......... .......... .......... 436 TTATATATAT TGAAATAGGT TTGCTGCTGT GGTCCATTTT GCTGGGCTTA AGGCTGTTGG 65259 | ||||||||| |||||||||| |||||||||| | |||||||| .......... ........GA ATGCTGCTGT GGTCCATTTT GCTGGGCTTA AAGCTGTTGG 478 AGAGAGTGTT GTTCAGCCCT TCCTTTACTT TGAGAACAAT CTGATTGGAT CAATAACTTT 65319 | ||| | | ||| |||| |||||| ||| |||||||||| |||||||||| ||||||||| AAAGAAAGAT TGTCACCCCT TCCTTTTCTT TGAGAACAAT CTGATTGGAT AAATAACTTT 538 GTATTCAGTC ATGGCCAAGT ATAATTGTAA GAAGGTACGT CTTTCGATAT AATTTTGGTT 65379 |||||||||| ||| | | |||||||| | || GTATTCAGTC GTGGGCCCGC ATAATTGTTA AAAA...... .......... .......... 572 TCATATAAGT GAAATATGCT ATGCATTCAG GGCAAGTTGG AATCTGTTAT GTTCATGATT 65439 .......... .......... .......... .......... .......... .......... 572 GCTGCTACCC TTATAGTTTT GGTAGAATTT GAAGGCTAAT AGTAAACATG GTTCTTCTTT 65499 .......... .......... .......... .......... .......... .......... 572 CAAGAACTCA TTTAGCCTCA AGAACATGGG CGTTGCTAGG GGGCGGAAGG AGGTTCAGTT 65559 .......... .......... .......... .......... .......... .......... 572 GTTCATGGTG TGGCGAACTG TTGGATTCGT AGGAGGGTAT TGAGTAGGTT GGTCAGGTTG 65619 .......... .......... .......... .......... .......... .......... 572 ATAACTTTTT AATTTCATTG TGTGAAATTG CAGTTGGTTT TTTCATCATC TGCAACAGTT 65679 ||||| |||| | ||| ||| || | | .......... .......... .......... ...AAGGTTT TTTCTTTATC TGCCACGGGT 599 TATGGTCAGC CTGAAAAGGT TCCCT-GTGT GGAGGATTTT GAATTGAAGG CTAT-GAATC 65737 ||||| | | || |||||| ||||| || |||||||||| ||||||| | ||| ||||| TATGGATAAC CTAAAAAGGA TCCCTGGTTG GGAGGATTTT TAATTGAAAG GTATGGAATC 659 CTTATGGTCG AA-CAAAGGT TTGTATTGTC AATAATTGTC TCTTAATTTC ATACTGATTA 65796 ||| ||||| || || || CTTTTGGTCC AACCAGAG.. .......... .......... .......... .......... 677 GAGATAGTTC ATTTGATAGT ATCTCAGTCT GTAAACTATG TGACCGAACC TGTGTTTTGT 65856 .......... .......... .......... .......... .......... .......... 677 TCTATTTAAT TAGCTATTTC TT-GAAGATA TTG-CACGGG ATATCCAG-A AGGCTGATCA 65913 || |||| || || | | ||| | |||| | ||||| | ||| ||| .......... ...CTTTTTC TTGGATAAAA TTGCCCCGGG AATTCCAGAA AGGTGGATTC 724 AGAATGGAAT A-TCATA-CT G-TTGAGGTA -TTTCAACCC GGTAGG-AGC TCATGAAAGT 65968 |||| |||| | ||||| || | |||||| | ||||| ||| || ||| | | || | |||| AGAAAGGAAA ATTCATACCT GCTTGAGGGA TTTTCACCCC GGCAGGAACC TCTTTAAAGG 784 GGC--AAACT CGGGG-AAGA TC-CAAAGGG CA-TTCCGAA CAATCTTATG CCTTACATT 66022 ||| ||||| ||||| || | || |||||| || || |||| | || | || | || GGCAAAAACT CGGGGAAAAA TCAAAAAGGG CATTTTCGAA ACAAATT-TT TTTTCCCTT 842 hqPGS_C08HBa0235H18.1+_SGN-U335231+ (64300 64622,65058 65107,65218 65353,65653 65754,65870 66022) ******************************************************************************** EST sequence 18 +strand 951 n (File: SGN-U335232+) 1 ATTGAGNNCC CCTGGAAANT TGCACNNCCT TTGTAGCTAC ACCGCGGCGG CGGGCGCTCT 61 AGAACTAGGG GATCCCCCGG GCTGCAGGAA TTCGGCACGA GTGTGACTGT AGCTTCTTTG 121 TATGAGGAAA AAAAAGAAAC TGAATGACTC AACATACCAT CTGTGACTAG AGTACATACG 181 AAAGAAACAG AAAATGAAGA GCGAGCAGAA GTTAACAGCC GGAACAACTT ATTGAACTAC 241 TAATAATGAA GAGAAAAGAC AGAAATATAG TTGAATATCC AAATATACTC ATGACATGAA 301 TCACCTTTAA CATATTTTGC TTCTTGTACT TGACTGTTAA ATGATCTTTA ATCTATTTCT 361 CACTAGATAC GAGATTATAT CCATGTTATG GATTTGGCGG ACGGTCATGT TGTTGCACTT 421 CAGAGACTTC TAAGGCAGAA TCACATAGGT TGTGTTGCCT ACAATTTGGG TACTGGAAAA 481 GGCAAATCTG TCCTAGAGAT GGTTGGTGCC TTTGAAAAGG CGTCTGGAAA GAAAATCCCG 541 CTTAAAATGT GTCCAAGAAG ACCAGGAGAT GCCACTGCTG TTTACGGCAT TTACTGAAAA 601 AGCTGGAAAG GAGCTCGGTT GGGAAGGCAA AATATGGGAT AAAATGAAAT GTGCAGGGAA 661 CAGTGGAAAT GGGCAAACCC AAATTCTTTG GGGGTACCAA CCAAAGCCTT GATATGTTTT 721 AATAATTAAT ATTAATATTC CAGTGGCACT TGGAGGACCA AACATGGGGG CAAAATTCCT 781 AGTCCTTTAC TTTTGGTGCG AACATTAATA GTTTCCAAGG GCAAAAAGGG GTCATCCAAT 841 AATTGGTGGG GGATGGGTAT TGTCCCACCT AAACCCTGGG GGGGGTGTCC TTAAAGGGTT 901 GTATGGGAAC CTGAAAGTGT CTAACCTTTT ATGAGTCCGT AAGAACAAAC G Predicted gene structure (within gDNA segment 63912 to 70074): Exon 1 65064 65076 ( 13 n); cDNA 90 101 ( 12 n); score: 0.692 Intron 1 65077 66121 (1045 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 66122 66468 ( 347 n); cDNA 102 448 ( 347 n); score: 1.000 Intron 2 66469 66623 ( 155 n); Pd: 0.998 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 66624 66706 ( 83 n); cDNA 449 531 ( 83 n); score: 1.000 Intron 3 66707 66801 ( 95 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 66802 66893 ( 92 n); cDNA 532 625 ( 94 n); score: 0.913 Intron 4 66894 67043 ( 150 n); Pd: 0.997 (s: 0.83), Pa: 0.990 (s: 0.85) Exon 5 67044 67305 ( 262 n); cDNA 626 896 ( 271 n); score: 0.733 MATCH C08HBa0235H18.1+ SGN-U335232+ 0.901 797 0.838 C PGS_C08HBa0235H18.1+_SGN-U335232+ (65064 65076,66122 66468,66624 66706,66802 66893,67044 67305) Alignment (genomic DNA sequence = upper lines): ATTAGAAACA GAGATGACTT GGAGAAGCTA TTTTCTAAGA AAGAGTATGA AAATTTTCTT 65123 ||| | || ||| ATTCGGCAC- GAG....... .......... .......... .......... .......... 101 GTTTTCAAAT TATCTCCTGC TGTTATTATT TCCTTTGAAT GCATTTCTAT GGTGTGTTGT 65183 .......... .......... .......... .......... .......... .......... 101 GATATTCATT GTTTTGTTAT ATATATTGAA ATAGGTTTGC TGCTGTGGTC CATTTTGCTG 65243 .......... .......... .......... .......... .......... .......... 101 GGCTTAAGGC TGTTGGAGAG AGTGTTGTTC AGCCCTTCCT TTACTTTGAG AACAATCTGA 65303 .......... .......... .......... .......... .......... .......... 101 TTGGATCAAT AACTTTGTAT TCAGTCATGG CCAAGTATAA TTGTAAGAAG GTACGTCTTT 65363 .......... .......... .......... .......... .......... .......... 101 CGATATAATT TTGGTTTCAT ATAAGTGAAA TATGCTATGC ATTCAGGGCA AGTTGGAATC 65423 .......... .......... .......... .......... .......... .......... 101 TGTTATGTTC ATGATTGCTG CTACCCTTAT AGTTTTGGTA GAATTTGAAG GCTAATAGTA 65483 .......... .......... .......... .......... .......... .......... 101 AACATGGTTC TTCTTTCAAG AACTCATTTA GCCTCAAGAA CATGGGCGTT GCTAGGGGGC 65543 .......... .......... .......... .......... .......... .......... 101 GGAAGGAGGT TCAGTTGTTC ATGGTGTGGC GAACTGTTGG ATTCGTAGGA GGGTATTGAG 65603 .......... .......... .......... .......... .......... .......... 101 TAGGTTGGTC AGGTTGATAA CTTTTTAATT TCATTGTGTG AAATTGCAGT TGGTTTTTTC 65663 .......... .......... .......... .......... .......... .......... 101 ATCATCTGCA ACAGTTTATG GTCAGCCTGA AAAGGTTCCC TGTGTGGAGG ATTTTGAATT 65723 .......... .......... .......... .......... .......... .......... 101 GAAGGCTATG AATCCTTATG GTCGAACAAA GGTTTGTATT GTCAATAATT GTCTCTTAAT 65783 .......... .......... .......... .......... .......... .......... 101 TTCATACTGA TTAGAGATAG TTCATTTGAT AGTATCTCAG TCTGTAAACT ATGTGACCGA 65843 .......... .......... .......... .......... .......... .......... 101 ACCTGTGTTT TGTTCTATTT AATTAGCTAT TTCTTGAAGA TATTGCACGG GATATCCAGA 65903 .......... .......... .......... .......... .......... .......... 101 AGGCTGATCA AGAATGGAAT ATCATACTGT TGAGGTATTT CAACCCGGTA GGAGCTCATG 65963 .......... .......... .......... .......... .......... .......... 101 AAAGTGGCAA ACTCGGGGAA GATCCAAAGG GCATTCCGAA CAATCTTATG CCTTACATTC 66023 .......... .......... .......... .......... .......... .......... 101 AGCAAGTAGC TGTTGGTAGA TTGCCGGAGT TGAATGTATA TGGCAACGAC TACCCTACAC 66083 .......... .......... .......... .......... .......... .......... 101 CTGATGGTAC CGCGGTAGGT TATGTTTGGC TGATTCTTTG TGACTGTAGC TTCTTTGTAT 66143 || |||||||||| |||||||||| .......... .......... .......... ........TG TGACTGTAGC TTCTTTGTAT 123 GAGGAAAAAA AAGAAACTGA ATGACTCAAC ATACCATCTG TGACTAGAGT ACATACGAAA 66203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAAAA AAGAAACTGA ATGACTCAAC ATACCATCTG TGACTAGAGT ACATACGAAA 183 GAAACAGAAA ATGAAGAGCG AGCAGAAGTT AACAGCCGGA ACAACTTATT GAACTACTAA 66263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACAGAAA ATGAAGAGCG AGCAGAAGTT AACAGCCGGA ACAACTTATT GAACTACTAA 243 TAATGAAGAG AAAAGACAGA AATATAGTTG AATATCCAAA TATACTCATG ACATGAATCA 66323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGAAGAG AAAAGACAGA AATATAGTTG AATATCCAAA TATACTCATG ACATGAATCA 303 CCTTTAACAT ATTTTGCTTC TTGTACTTGA CTGTTAAATG ATCTTTAATC TATTTCTCAC 66383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTAACAT ATTTTGCTTC TTGTACTTGA CTGTTAAATG ATCTTTAATC TATTTCTCAC 363 TAGATACGAG ATTATATCCA TGTTATGGAT TTGGCGGACG GTCATGTTGT TGCACTTCAG 66443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATACGAG ATTATATCCA TGTTATGGAT TTGGCGGACG GTCATGTTGT TGCACTTCAG 423 AGACTTCTAA GGCAGAATCA CATAGGTAAG TAATCCTTTT CAAAGCAAAG TTTAGATCTG 66503 |||||||||| |||||||||| ||||| AGACTTCTAA GGCAGAATCA CATAG..... .......... .......... .......... 448 AATTCTTTTG ACGTTAGTTC GAGCTAATGA TACCCTTTTG TATGATTTTG ACATTTCATA 66563 .......... .......... .......... .......... .......... .......... 448 TATTTCGGTT GAAGGTAACA TCTTGTGACA TTTGTTCTTC TGTTTAATGG TTTGCATTAG 66623 .......... .......... .......... .......... .......... .......... 448 GTTGTGTTGC CTACAATTTG GGTACTGGAA AAGGCAAATC TGTCCTAGAG ATGGTTGGTG 66683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGC CTACAATTTG GGTACTGGAA AAGGCAAATC TGTCCTAGAG ATGGTTGGTG 508 CCTTTGAAAA GGCGTCTGGA AAGGTCTCTT AACGGAACAC GCTAAACCAT ACTTAGTAGA 66743 |||||||||| |||||||||| ||| CCTTTGAAAA GGCGTCTGGA AAG....... .......... .......... .......... 531 ATTTGAACAA AGCAACAATC TCATATTATG TTGTACTAAT ATATTATTTT TGTTCCAGAA 66803 || .......... .......... .......... .......... .......... ........AA 533 AATCCCGCTT AAAATGTGTC CAAGAAGACC AGGAGATGCC ACTGCTGTTT AC-GCATCTA 66862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||| || AATCCCGCTT AAAATGTGTC CAAGAAGACC AGGAGATGCC ACTGCTGTTT ACGGCATTTA 593 CTGAAAAAGC TGAGAAGGAG CTCGGTT-GG AAGTAAGTAG TAAATGGTTA TTTTTCTATT 66921 |||||||||| || |||||| ||||||| || || CTGAAAAAGC TGGAAAGGAG CTCGGTTGGG AA........ .......... .......... 625 CTTGGATCAA CTGATGCTTG TGCCTAGCAG CCTCATAAAG GCTAATCTTC TTGCATCTCA 66981 .......... .......... .......... .......... .......... .......... 625 TTCATTTCAC CAGTTGAAAG AGAAACTGAT GGTGGGATCA AATCTTTTCT ACTTCTTTTC 67041 .......... .......... .......... .......... .......... .......... 625 AGGGCAAAAT ATGGGAT-AA ATGAGATGTG CAGGGACCAG TGGAAATGGG C-AAGCCAAA 67099 |||||||| ||||||| || |||| ||||| |||||| ||| |||||||||| | || ||||| ..GGCAAAAT ATGGGATAAA ATGAAATGTG CAGGGAACAG TGGAAATGGG CAAACCCAAA 683 ATCCTTGGGG TTACCAACCA AAGCCTTGAT ATGTTATAAT AA-TAATAAT AATAATACAA 67158 || |||||| ||||||||| |||||||||| ||||| |||| || ||||| | ||| || | | TTCTTTGGGG GTACCAACCA AAGCCTTGAT ATGTTTTAAT AATTAATATT AAT-ATTCCA 742 GTAGCACTTG GAGTACAAAA C-TGTAGTCA ACA-TCCTAG TACTTTACAT TTCATGCAAA 67216 || ||||||| ||| || ||| | || | || | | |||||| | |||||| | || ||| || GTGGCACTTG GAGGACCAAA CATGGGGGCA AAATTCCTAG TCCTTTACTT TTGGTGCGAA 802 CATTAGATGT ATCCAAGGAC -AAAAGTGTT CATCC-ATAA -TAGTTGTTG ATGGTTA-TG 67272 ||||| || ||||||| | ||||| | | ||||| |||| | || | | |||| || || CATTAATAGT TTCCAAGGGC AAAAAGGGGT CATCCAATAA TTGGTGGGGG ATGGGTATTG 862 TACTA-CTAA ACCCTGTTGT TGTCTCCCTT AAAG 67305 | | | |||| |||||| | | |||| |||| TCCCACCTAA ACCCTGGGGG GGGTGTCCTT AAAG 896 hqPGS_C08HBa0235H18.1+_SGN-U335232+ (66122 66468,66624 66706,66802 66893,67044 67305) ******************************************************************************** EST sequence 27 +strand 1174 n (File: SGN-U327756+) 1 CTAATTAGTT ATCTCTATGC AAATTTGCTC AATTGGCTGC AAAAGTATCC CAGACTTTTT 61 GGTCAAATTG TTCTTTTGAG AGTAATCATT TGCTAACAGT TGAGGAAAGG AGAGAACTAT 121 GAAAGAAGAA GGTAATGTGA TGGTGACTGC TCAGACAATC ATATCTGGTG CTTCTCCTTC 181 TCCTACATTA ACTCCACAAC CACCTTTGCC AACACCATCA CCATATTCGT TCTCAGTGGC 241 ATCGACAAGG TTGAGATCAA GGCCTTCTAT ATATGCATAT GATCTTGCCC TAAGATCACT 301 GGCACTTCTG TTCTCTTTCA TATCTGCTCT TTCACTAGCT GTACCATCAC CAACAAGGAC 361 AAAACGAGGA ACGATTTCAA AATTCTGTGA TTACCCACAA TTAACGTAAG AATCAACACA 421 GGATTTCAGG ATTTAAACTA AGACAACATT CAGTTCTATG GTTTTGAGAG CTGTTTTTAC 481 ACTACTGCAG GTACTGCTTC AGTGTAAGCG TATTAGCTTT TATCTACTCA GCTTTTCAAC 541 TCTTCAAAAG AGTTTGTGAC ATCGCTTATA GAGGTGTCTT GATCTCCGAT AAGACCTCTG 601 ACTATCTCAG TTTCATACTC GATCAGTTGA CAGGTTACCT CCTCGTGTCC TCTTCTTCAG 661 TAACTATACC AGTCATTCAA GAGATGGATA TCCAAGCCTC TCTCTGGAAG GCAGCTATTC 721 TTGCTGTTTG CATGTCATTT GCTGCTTTCA TGGTCCTTGC AGTGTCTGCA CTTTTATCAG 781 GCTACAAGCT GTGCAAAAGG ATCATATGGT GATGGACTGG GAATTGAACG TGCAGCCTTC 841 AACTCCAGGA TTGACAAAGC AATCGTAGTG TAAAATGGGA CATGATTTCT TCGATCTGCT 901 TGAAGCATCA CAAGAAGCAA TTGGGTGGCA GATACCAAAT ATCCTCTACT ACACTAATGG 961 TCTGGTAGAA GTTGATAACA GTAAGAAGAG GGTTTCAGAA GTTTATAGCA AAGAATAGAA 1021 ATATTTTTGG AGGAAAATAT CCATATACCA CTATGAATTG TTGTCCCACC GCCCATGGTG 1081 AATGAACCAG TATTAAGTAG TAACAAACTN AGTTTGAACT TCCTTGCTTC GANAGTATAA 1141 CAANAAACTT ACAGTTCTTT TTCTAAAAAA AAAA Predicted gene structure (within gDNA segment 66976 to 69832): Exon 1 67576 68201 ( 626 n); cDNA 1 626 ( 626 n); score: 1.000 Intron 1 68202 68599 ( 398 n); Pd: 0.983 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 68600 69139 ( 540 n); cDNA 627 1172 ( 546 n); score: 0.967 MATCH C08HBa0235H18.1+ SGN-U327756+ 0.985 1166 0.993 C PGS_C08HBa0235H18.1+_SGN-U327756+ (67576 68201,68600 69139) Alignment (genomic DNA sequence = upper lines): CTAATTAGTT ATCTCTATGC AAATTTGCTC AATTGGCTGC AAAAGTATCC CAGACTTTTT 67635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATTAGTT ATCTCTATGC AAATTTGCTC AATTGGCTGC AAAAGTATCC CAGACTTTTT 60 GGTCAAATTG TTCTTTTGAG AGTAATCATT TGCTAACAGT TGAGGAAAGG AGAGAACTAT 67695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCAAATTG TTCTTTTGAG AGTAATCATT TGCTAACAGT TGAGGAAAGG AGAGAACTAT 120 GAAAGAAGAA GGTAATGTGA TGGTGACTGC TCAGACAATC ATATCTGGTG CTTCTCCTTC 67755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAAGAA GGTAATGTGA TGGTGACTGC TCAGACAATC ATATCTGGTG CTTCTCCTTC 180 TCCTACATTA ACTCCACAAC CACCTTTGCC AACACCATCA CCATATTCGT TCTCAGTGGC 67815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTACATTA ACTCCACAAC CACCTTTGCC AACACCATCA CCATATTCGT TCTCAGTGGC 240 ATCGACAAGG TTGAGATCAA GGCCTTCTAT ATATGCATAT GATCTTGCCC TAAGATCACT 67875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGACAAGG TTGAGATCAA GGCCTTCTAT ATATGCATAT GATCTTGCCC TAAGATCACT 300 GGCACTTCTG TTCTCTTTCA TATCTGCTCT TTCACTAGCT GTACCATCAC CAACAAGGAC 67935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACTTCTG TTCTCTTTCA TATCTGCTCT TTCACTAGCT GTACCATCAC CAACAAGGAC 360 AAAACGAGGA ACGATTTCAA AATTCTGTGA TTACCCACAA TTAACGTAAG AATCAACACA 67995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGAGGA ACGATTTCAA AATTCTGTGA TTACCCACAA TTAACGTAAG AATCAACACA 420 GGATTTCAGG ATTTAAACTA AGACAACATT CAGTTCTATG GTTTTGAGAG CTGTTTTTAC 68055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTTCAGG ATTTAAACTA AGACAACATT CAGTTCTATG GTTTTGAGAG CTGTTTTTAC 480 ACTACTGCAG GTACTGCTTC AGTGTAAGCG TATTAGCTTT TATCTACTCA GCTTTTCAAC 68115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACTGCAG GTACTGCTTC AGTGTAAGCG TATTAGCTTT TATCTACTCA GCTTTTCAAC 540 TCTTCAAAAG AGTTTGTGAC ATCGCTTATA GAGGTGTCTT GATCTCCGAT AAGACCTCTG 68175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCAAAAG AGTTTGTGAC ATCGCTTATA GAGGTGTCTT GATCTCCGAT AAGACCTCTG 600 ACTATCTCAG TTTCATACTC GATCAGGTAT ATACTAACTT TAATAAGCTA GAGATTACTT 68235 |||||||||| |||||||||| |||||| ACTATCTCAG TTTCATACTC GATCAG.... .......... .......... .......... 626 CCGAGTCCAA AACCTAAAGG AAGCTGGCTC ACTGTTTCAC ATGTAACTAC GACCATAAAA 68295 .......... .......... .......... .......... .......... .......... 626 TGGTTGCATC CCTACCTTTA GTTCAAACTA GTAGCAAGAA TTTACTCTCT CACTTGGGAT 68355 .......... .......... .......... .......... .......... .......... 626 TTCGCCTGAT GTATCATCAA CATCTACGCT CTATTATCCA CTAACAGTGA AACTTTATGT 68415 .......... .......... .......... .......... .......... .......... 626 TGAACAATAA TGGCAAGAAA CAGAAATCAT CTTATAGGAA GAAACAAAGA GTAGAAGCAT 68475 .......... .......... .......... .......... .......... .......... 626 CTTATTTGAA TATCAAGCAT CCTAAATTTC ATTTCTTCTG AATGCTTCTC TCTAGTTCTC 68535 .......... .......... .......... .......... .......... .......... 626 CTTTTCATTT ACTGCAGATA AATATTTCTA AACAACGAAT TCTCATAAGC AGAATGTTTT 68595 .......... .......... .......... .......... .......... .......... 626 ACAGTTGACA GGTTACCTCC TCGTGTCCTC TTCTTCAGTA ACTATACCAG TCATTCAAGA 68655 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TTGACA GGTTACCTCC TCGTGTCCTC TTCTTCAGTA ACTATACCAG TCATTCAAGA 682 GATGGATATC CAAGCCTCTC TCTGGAAGGC AGCTATTCTT GCTGTTTGCA TGTCATTTGC 68715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGATATC CAAGCCTCTC TCTGGAAGGC AGCTATTCTT GCTGTTTGCA TGTCATTTGC 742 TGCTTTCATG GTCCTTGCAG TGTCTGCACT TTTATCAGGC TACAAGCTGT GCAAAAGGAT 68775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTCATG GTCCTTGCAG TGTCTGCACT TTTATCAGGC TACAAGCTGT GCAAAAGGAT 802 CATATGGTGA TGGACTGGGA ATTGAACGTG CAGCCTTCAA CTCCAGGATT GACAAAGCAA 68835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATGGTGA TGGACTGGGA ATTGAACGTG CAGCCTTCAA CTCCAGGATT GACAAAGCAA 862 TCGTAGTGTA AAATGGGACA TGATTTCTTC GATCTGCTTG AAGCATCACA AGAAGCAATT 68895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTAGTGTA AAATGGGACA TGATTTCTTC GATCTGCTTG AAGCATCACA AGAAGCAATT 922 GGGTGGCAGA TACCAAATAT CCTCTACTAC ACTAATGGTC TGGTAGAAGT TGATAACAGT 68955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGCAGA TACCAAATAT CCTCTACTAC ACTAATGGTC TGGTAGAAGT TGATAACAGT 982 AAGAAGAGGG TTTCAGAAGT TTATAGCAAA GAATAGAAAT ATTTTTGGAG GAAAATATCC 69015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAGGG TTTCAGAAGT TTATAGCAAA GAATAGAAAT ATTTTTGGAG GAAAATATCC 1042 ATATA-CACT ATGAATTGTT GTCCCACCG- CCATGGTGAA TGAA-CAGTA TTAAGTAGTA 69072 ||||| |||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| ATATACCACT ATGAATTGTT GTCCCACCGC CCATGGTGAA TGAACCAGTA TTAAGTAGTA 1102 ACAAACT-AG TTTGAACTTC CTTGCTTCGA -AGTATAACA A-AAACTTAC AGTTCTTTTT 69129 ||||||| || |||||||||| |||||||||| ||||||||| | |||||||| |||||||||| ACAAACTNAG TTTGAACTTC CTTGCTTCGA NAGTATAACA ANAAACTTAC AGTTCTTTTT 1162 CTACAGATAA 69139 ||| | | || CTAAAAAAAA 1172 hqPGS_C08HBa0235H18.1+_SGN-U327756+ (67576 68201,68600 69139) ******************************************************************************** EST sequence 62 +strand 1917 n (File: SGN-U314692+) 1 GGAAGGGCAG CTAAGGTGTG AAGAAGAAGA TGGAGGAGTC TGATTGGTGA TGATAGTAAA 61 TTGCTTAAGA GGATTTTGGC ATTATAAATA GTCGTATCAA GTTTGAGTTG TTCCATGAGA 121 TAGCAACTGG GAAAACAAGT ACTAGAAAAA CCATGCCTGC TTTAGTGCTA ACAAGGGCCC 181 TCTTGTTAAT TGGGGATTCT TTAGCTTTCA GAAAAGTTAC ACAGTTTACA CGGATAGCTC 241 CATCTCAAGG CAATGTTCGC TTTTTAAGTA GCAGTGGATC CCTCACTCTA GCTAGCCTTG 301 GATTGAAGAG TGAAGTTAAG ACAGTAAGTG CAAATGAGAA AAATAAGCTC CAGCAGGGAA 361 TTTCAACAAT TGAGGTCCCG AAGAGCAGAG AGAAGAAAAG AGTTGGTGGC AATAAACAAG 421 GATTGGTTAA GGAGAAAAAC CCAGTAGATA TAATGACTGC ACCATTTGCT GCGAAGTCAT 481 TTTCAGAACT TGGCCTTCCA CCTTTGTTGG TCGAAAGACT AGAGACGGAA GGCTTTACGA 541 TTCCGACTGA TGTTCAAGCT GCTGCAGTTC CAACTGTTCT TAAAAATCAT GATGTTGTGA 601 TTCAGTCCTA CACAGGTTCA GGAAAAACAT TAGCTTATCT CCTTCCCATA CTGTCTCGAG 661 TTGGTCCGTT GAAGGAAGAA CTTCCAGATG GCTATGAAAC TGGGAACAAA ATAGACATCG 721 AAGCAGTTAT AGTAGCTCCT TCGAGGGAAC TTGGCATGCA GATTGTCAGG GAAGTTGAAA 781 AGCTGTTAGG ACCAGCGAAT AAGAAACTAG TCCAGCAGCT TGTAGGGGGT GCAAACCGAT 841 CTAGACAGGA GGATGCTCTG AAGAAGAACA AGCCCGACAT TGTAGTGGGG ACACCAGGGC 901 GGATAGCAGA GATTAGTGCA GCTGGAAAGC TTCCTACCCA TGGTTGTCGT TACTTGGTAT 961 TGGATGAAAT TGATCAACTC CTTGCATTCA CTTTCAGGGA GGACATGAAG CGTATATTAG 1021 ACCATGTGGG GAGAAGACCT GGTGCACGTG GAGGAGAGTC AAATAGTCCA CTTGTCAAGC 1081 GAGCTGCACG TCAGACTATT ATGGTGTCTG CAACAGTGCC TTTTTCAGTT ATAAGAGCAG 1141 CAAGAAGTTG GGGTTGTGAT CCACTTCTCA TCCAAGCCAA TAAAGTTGTT CCACTCGAGT 1201 CTGTCACTCC TTCTGGATCT GTTAATATAC CGGGAACACC TTCTACTACT GATTCAAGCT 1261 CAAGTGTACA ACCTATGCCT GATGTTCAGA GCTTACCCCC TAATTTGCAG CATTATTACA 1321 CTATTACTAG GATACAGCAC AAAGTTGATA TGTTAAGAAG GTGTGTGCAC GCTCTGGATG 1381 CCAAATGTGT AATAGCTTTT ATGAACCACA CAAAACAGCT AAAAGATGCT GTCTTCAAAC 1441 TAGAAGCTCG TGGTATGAAT GCTGCAGAAT TACATGGTGA TCTTAGCAAA CTTGTGAGAT 1501 CAACAATCTT AAAGAAGTTC AGAAATGGGG AGATTAGAGT GCTGCTAACG AATGAGCTTT 1561 CAGCTAGAGG CTTGGATTTA CCTGAATGTG ATCTTGTAGT TAATCTGGGG TTACCTACTG 1621 ACTCGGTTCA TTATGCTCAT CGAGCTGGTC GTACGGGCAG GCTTGGTCGC AAGGGCACGG 1681 TAGTAACCAT ATGTGAAGAG TCAGAAGTCT TTGTGGTAAA AAAGCTACAG AAGCAACTTT 1741 CCCTCTCTAT CGAGGCATGT GAATTTTCTG AGGGAAATCT TGTCATTATA GAAGATTAAA 1801 CTGCATAGCA CTTGCTTCTG TCAAGTTTTA ACTAGACAAA TCACTAAAGA CAACTGAAAT 1861 TTGTTTACTA GTGGTGAGAG CTGAAATGTT GTTGCTTGCC ATTAAACATG CCAATTC Predicted gene structure (within gDNA segment 72329 to 68879): Exon 1 72228 72191 ( 38 n); cDNA 1 38 ( 38 n); score: 0.947 Intron 1 72190 71368 ( 823 n); Pd: 0.991 (s: 0), Pa: 0.980 (s: 1.00) Exon 2 71367 69489 (1879 n); cDNA 39 1917 (1879 n); score: 0.997 MATCH C08HBa0235H18.1- SGN-U314692+ 0.997 1917 1.000 C PGS_C08HBa0235H18.1-_SGN-U314692+ (72228 72191,71367 69489) Alignment (genomic DNA sequence = upper lines): GGAAGGGCAG CTAAGTTGTG AAGAAGAAGA TGAAGGAGGT AAAAATACAC CTTCAATTTC 72169 |||||||||| ||||| |||| |||||||||| || ||||| GGAAGGGCAG CTAAGGTGTG AAGAAGAAGA TGGAGGAG.. .......... .......... 38 CTCTTTATTC TCTTACCCAA TTCAATGGAG GCTAAGCTTT CGTGTTTATT TGTTTTTGTT 72109 .......... .......... .......... .......... .......... .......... 38 AGTTTCATGT TCTCTTATAT GTTTAGTTTT CCTTCAAATT TTGCTTCTTG TTTGTTTCCA 72049 .......... .......... .......... .......... .......... .......... 38 TTTTTATTTT TTGATGAGTT CGAACTCTCT AGAAAGTTGA AAACTTTATA GATTATGCAT 71989 .......... .......... .......... .......... .......... .......... 38 TGAATGTGAT AGTGAAAATG CGTAGGTGTG TAGAAATGAG AGTTGAGGGT TTGATATGTT 71929 .......... .......... .......... .......... .......... .......... 38 TTTGATGAAA TGGTCACCAT GTGTTTGATG AAATGTTTAG TGTCTTCTAG TTTCTGGGTG 71869 .......... .......... .......... .......... .......... .......... 38 TTAAAAAAAT GTCTATATAA GAGGTTATGT GGGATATGAT TTACTGCAGT AAACGTCATT 71809 .......... .......... .......... .......... .......... .......... 38 CAGTCATCCC TGCTATTGAT CTTCAAGAGT GGACAGTTAT GTGGTGTTTG AATGATATAG 71749 .......... .......... .......... .......... .......... .......... 38 TTGAACTATG TTTAGTTAGG GAGTAGAGGA TATCACTTGG CACCTAAGGT GAGGTTCAAG 71689 .......... .......... .......... .......... .......... .......... 38 CTTAGTGGAG AAAAGGAAAA TAGGATTTAT GGCTGAAGGG AGCGGGATGG ATATAGAGAA 71629 .......... .......... .......... .......... .......... .......... 38 TTCATATAAC AGAGTACAGA CACTAACTAG TTTTGATTGA TCGATTGATT CATTGAGTTG 71569 .......... .......... .......... .......... .......... .......... 38 TTTGACTTGC CTTTTGCACT AATGCTCTTT GCTGATTATT TTCTTTTTCT TGAAGAGGGA 71509 .......... .......... .......... .......... .......... .......... 38 TATTACAGCA AAAGAGGCAT ACTTTTGTCA CTACATTCTC AATTTTTAGT AAAAAGAATG 71449 .......... .......... .......... .......... .......... .......... 38 CTGATATGCT AAATCTTAAT TTTACTTATC ATAGGTCCTA TATTGTTATG TATATTTGAT 71389 .......... .......... .......... .......... .......... .......... 38 ATTTTAACAT TTTTGTTGCA GTCTGATTGG TGATGATAGT AAATTGCTTA AGAGGATTTT 71329 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TCTGATTGG TGATGATAGT AAATTGCTTA AGAGGATTTT 77 GGCATTATAA ATAGTCATAT CAAGTTTGAG TTGTTCCATG AGATAGCAAC TGGGAAAACA 71269 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATTATAA ATAGTCGTAT CAAGTTTGAG TTGTTCCATG AGATAGCAAC TGGGAAAACA 137 AGTACTAGAA AAACCATGCC TGCTTTAGTG CTAACAAGGG CCCTCTTGTT AATTGGGGAT 71209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACTAGAA AAACCATGCC TGCTTTAGTG CTAACAAGGG CCCTCTTGTT AATTGGGGAT 197 TCTTTAGCTT TCAGAAAAGC TACACAGTTT ACACGGATAG CTCCATCTCA AGGCAATGTT 71149 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGCTT TCAGAAAAGT TACACAGTTT ACACGGATAG CTCCATCTCA AGGCAATGTT 257 CGCTTTTTAA GTAGCAGTGG ATCCCTCACT CTAGCTAGCC TTGGATTGAA GAGTGAAGTT 71089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTTTTTAA GTAGCAGTGG ATCCCTCACT CTAGCTAGCC TTGGATTGAA GAGTGAAGTT 317 AAGACAGTAA GTGCAAATGA GAAAAATAAG CTCCAGCAGG GAATTTCAAC TATTGAGGTC 71029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGACAGTAA GTGCAAATGA GAAAAATAAG CTCCAGCAGG GAATTTCAAC AATTGAGGTC 377 CCAAAGAGCA GAGAGAAGAA AAGAGTTAGT GGCAATAAAC AAGGATTGGT TAAGGAGAAA 70969 || ||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CCGAAGAGCA GAGAGAAGAA AAGAGTTGGT GGCAATAAAC AAGGATTGGT TAAGGAGAAA 437 AACCCAGTAG ATATAATGAC TGCACCATTT GCTGCGAAGT CATTTTCAGA ACTTGGCCTT 70909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCAGTAG ATATAATGAC TGCACCATTT GCTGCGAAGT CATTTTCAGA ACTTGGCCTT 497 CCACCTTTGT TGGTCGAAAG ACTAGAGACG GAAGGCTTTA CGATTCCGAC TGATGTTCAA 70849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCTTTGT TGGTCGAAAG ACTAGAGACG GAAGGCTTTA CGATTCCGAC TGATGTTCAA 557 GCTGCTGCAG TTCCAACTGT TCTTAAAAAT CATGATGTTG TGATTCAGTC CTACACAGGT 70789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGCAG TTCCAACTGT TCTTAAAAAT CATGATGTTG TGATTCAGTC CTACACAGGT 617 TCAGGAAAAA CATTAGCTTA TCTCCTTCCC ATACTGTCTC GAGTTGGTCC GTTGAAGGAA 70729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGAAAAA CATTAGCTTA TCTCCTTCCC ATACTGTCTC GAGTTGGTCC GTTGAAGGAA 677 GAACTTCCAG ATGGCTATGA AACTGGGAAC AAAATAGACA TCGAAGCAGT TATAGTAGCT 70669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTCCAG ATGGCTATGA AACTGGGAAC AAAATAGACA TCGAAGCAGT TATAGTAGCT 737 CCTTCGAGGG AACTTGGCAT GCAGATTGTC AGGGAAGTTG AAAAGCTGTT AGGACCAGCG 70609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCGAGGG AACTTGGCAT GCAGATTGTC AGGGAAGTTG AAAAGCTGTT AGGACCAGCG 797 AATAAGAAAC TAGTCCAGCA GCTTGTAGGG GGTGCAAACC GATCTAGACA GGAGGATGCT 70549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGAAAC TAGTCCAGCA GCTTGTAGGG GGTGCAAACC GATCTAGACA GGAGGATGCT 857 CTGAAGAAGA ACAAGCCCGA CATTGTAGTG GGGACACCAG GGCGGATAGC AGAGATTAGT 70489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGAAGA ACAAGCCCGA CATTGTAGTG GGGACACCAG GGCGGATAGC AGAGATTAGT 917 GCAGCTGGAA AGCTTCCTAC CCATGGTTGT CGTTACTTGG TATTGGATGA AATTGATCAA 70429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTGGAA AGCTTCCTAC CCATGGTTGT CGTTACTTGG TATTGGATGA AATTGATCAA 977 CTCCTTGCAT TCACTTTCAG GGAGGACATG AAGCGTATAT TAGACCATGT GGGGAGAAGA 70369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTGCAT TCACTTTCAG GGAGGACATG AAGCGTATAT TAGACCATGT GGGGAGAAGA 1037 CCTGGTGCAC GTGGAGGAGA GTCAAATAGT CCACTTGTCA AGCGAGCTGC ACGTCAGACT 70309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGTGCAC GTGGAGGAGA GTCAAATAGT CCACTTGTCA AGCGAGCTGC ACGTCAGACT 1097 ATTATGGTGT CTGCAACAGT GCCTTTTTCA GTTATAAGAG CAGCAAGAAG TTGGGGTTGT 70249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGGTGT CTGCAACAGT GCCTTTTTCA GTTATAAGAG CAGCAAGAAG TTGGGGTTGT 1157 GATCCACTTC TCATCCAAGC CAATAAAGTT GTTCCACTCG AGTCTGTCAC TCCTTCTGGA 70189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCACTTC TCATCCAAGC CAATAAAGTT GTTCCACTCG AGTCTGTCAC TCCTTCTGGA 1217 TCTGTTAATA TACCGGGAAC ACCTTCTACT ACTGATTCAA GCTCAAGTGT ACAACCTATG 70129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTAATA TACCGGGAAC ACCTTCTACT ACTGATTCAA GCTCAAGTGT ACAACCTATG 1277 CCTGATGTTC AGAGCTTACC CCCTAATTTG CAGCATTATT ACACTATTAC TAGGATACAG 70069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGATGTTC AGAGCTTACC CCCTAATTTG CAGCATTATT ACACTATTAC TAGGATACAG 1337 CACAAAGTTG ATATGTTAAG AAGGTGTGTG CACGCTCTGG ATGCCAAATG TGTAATAGCT 70009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAAGTTG ATATGTTAAG AAGGTGTGTG CACGCTCTGG ATGCCAAATG TGTAATAGCT 1397 TTTATGAACC ACACAAAACA GCTAAAAGAT GCTGTCTTCA AACTAGAAGC TCGTGGTATG 69949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGAACC ACACAAAACA GCTAAAAGAT GCTGTCTTCA AACTAGAAGC TCGTGGTATG 1457 AATGCTGCAG AATTACATGG TGATCTTAGC AAACTTGTGA GATCAACAAT CTTAAAGAAG 69889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGCAG AATTACATGG TGATCTTAGC AAACTTGTGA GATCAACAAT CTTAAAGAAG 1517 TTCAGAAATG GGGAGATTAG AGTGCTGCTA ACGAATGAGC TTTCAGCTAG AGGCTTGGAT 69829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAAATG GGGAGATTAG AGTGCTGCTA ACGAATGAGC TTTCAGCTAG AGGCTTGGAT 1577 TTACCTGAAT GTGATCTTGT AGTTAATCTG GGGTTACCTA CTGACTCGGT TCATTATGCT 69769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCTGAAT GTGATCTTGT AGTTAATCTG GGGTTACCTA CTGACTCGGT TCATTATGCT 1637 CATCGAGCTG GTCGTACGGG CAGGCTTGGT CGCAAGGGCA CGGTAGTAAC CATATGTGAA 69709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGAGCTG GTCGTACGGG CAGGCTTGGT CGCAAGGGCA CGGTAGTAAC CATATGTGAA 1697 GAGTCAGAAG TCTTTGTGGT AAAAAAGCTA CAGAAGCAAC TTTCCCTCTC TATCGAGGCA 69649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCAGAAG TCTTTGTGGT AAAAAAGCTA CAGAAGCAAC TTTCCCTCTC TATCGAGGCA 1757 TGTGAATTTT CTGAGGGAAA TCTTGTCATT ATAGAAGATT AAACTGCATA GCACTTGCTT 69589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAATTTT CTGAGGGAAA TCTTGTCATT ATAGAAGATT AAACTGCATA GCACTTGCTT 1817 CTGTCAAGTT TTAACTAGAC AAATCACTAA AGACAACTGA AATTTGTTTA CTAGTGGTGA 69529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCAAGTT TTAACTAGAC AAATCACTAA AGACAACTGA AATTTGTTTA CTAGTGGTGA 1877 GAGCTGAAAT GTTGTTGCTT GCCATTAAAC ATGCCAATTC 69489 |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGAAAT GTTGTTGCTT GCCATTAAAC ATGCCAATTC 1917 hqPGS_C08HBa0235H18.1-_SGN-U314692+ (72228 72191,71367 69489) ******************************************************************************** EST sequence 29 -strand 968 n (File: SGN-U338980-) 1 GCGTAAAAAT TTTGTGGAGC GACCCAAGGG GGTGAGAAGT GGCGTTTTAT ACTAATAACC 61 TTGTGGAATA GATACTCAAC ACTCTCATGA ATACTTGAAC AATTTACAGA TATCCACCAG 121 TTTAAGAAAG TTCAAGCAAT TGGAAGCTTG GAATCTCTTC AAGAAATCGC TTTAACCACG 181 GGGATGAAAT TTGCCGGAAA TGTGCATGTG TATCAGTAGG GGTAACCGCA TGCTTAGGTT 241 CATTATGTAA ACTGAGTGGG TGGTATAGCC AGGCCTGGGT CGCACGGGCA CAGTAGTAAC 301 CTTAGCTGAG GAATCGGAAG TCTTAGTGGC GGAGAAGCTA CCGAAGCGAC TTTCCCTCTT 361 TATAGAGGCA TGTGATTTTT TGTAGGGAAG TTTTGTCATT TTGAAAGGTT CACCTGCAAG 421 GCGCTTGCAT TTGTCAGGTT TGGGCAAGCC AAATCCTTAA AGACAATCGA AAATTTGTTT 481 ACTAGTGGAG AGAGCCGAAA TGTTGTTACT AACCATTAAA CATGCCAATT CAGATGAGAT 541 TTAGCCTTCT AAAGAATATC ACGACTTTAG AATGTGCCAA GCAGTCTCCA TTTGATCTGA 601 AATCCTGATG GTATGGTGAA CGAATATATG TAAGCCATCT GAGACGAATG ATTTTCCAGA 661 TTTGCTGGGT ATAAAAAAAA AAATATCGTA AGTAATATGT GAATTGATGT TCCTAATGTT 721 GAATATGAGA TAACTGTAGG TTTTAAACTG AAATTACTTC TTTGTTCATC AAGGAAGGTT 781 TAGTATTTTG GTTATATGGA GCTGCCAGTG TTTGATAGTA TTTATAATTT TATACATTAC 841 ACTGTAATAA TCTTCCGGCC TAGCCCCCTT TTTGAAAAAC ACCCTCTCGA GGGGGGCCCG 901 TACCCATTGG AGAATTTCGT TATTTTGTGG AGTGTTAATA GTAGGAANAA AAAAAAGGGG 961 NNNGGGGN Predicted gene structure (within gDNA segment 75237 to 67345): Exon 1 70017 69157 ( 861 n); cDNA 3 862 ( 860 n); score: 0.783 PPA cDNA 946 956 MATCH C08HBa0235H18.1- SGN-U338980- 0.783 861 0.889 C PGS_C08HBa0235H18.1-_SGN-U338980- (70017 69157) Alignment (genomic DNA sequence = upper lines): GTAATAGCTT TTATGAACCA CACAAAACAG CTAAAAGATG CTGTCTTCAA ACTAGAAGCT 69958 |||| | || | || | | | ||| | | ||| || || || | | || || GTAAAAATTT TGTGGAGCGA CCCAAGGGGG TGAGAAG-TG GCGTTTTATA CTAATAACCT 61 CGTGGTATGA ATGCTGCAGA ATTACATGGT GATCTTAGCA AACTTGTGAG ATCAACAATC 69898 |||| || || || | | | |||| | | | || | | || ||| || | TGTGGAATAG ATACTCAACA CTCTCATGAA TACTTGAACA ATTTACAGAT ATCCACCAGT 121 TTAAAGAAGT TC-AGAAATG GGGAGATTAG AGTGCTGCTA ACGAATGAGC TTTCAGCTAG 69839 |||| |||| || || ||| || || || | | | || | | ||| || ||| | | | TTAAGAAAGT TCAAGCAATT GGAAGCTTGG AAT-CTCTTC AAGAAATCGC TTTAACCACG 180 AGGCTTGGAT TTACCTGAA- TGTGATCTTG TAGTTAATCT GGGGTTACCT ACTGACTCGG 69780 || | || || || ||| |||| || || | | | ||||| ||| || | || GGGATGAAAT TTGCCGGAAA TGTGCATGTG TA-TCAGT-A GGGGTAACCG CATGCTTAGG 238 TTCATTATGC TCATCGAGCT GGTCGTACGG GCAGG-CTTG GTCGCAAGGG CACGGTAGTA 69721 ||||||||| | ||| ||| ||| | |||| || | |||||| ||| ||| |||||| TTCATTATGT AAACTGAGTG GGTGGTATAG CCAGGCCTGG GTCGCACGGG CACAGTAGTA 298 ACCATATGTG AAGAGTCAGA AGTCTTTGTG GTAAAAAAGC TACAGAAGCA ACTTTCCCTC 69661 ||| || || | || || || |||||| ||| | | |||| ||| ||||| |||||||||| ACCTTAGCTG AGGAATCGGA AGTCTTAGTG GCGGAGAAGC TACCGAAGCG ACTTTCCCTC 358 TCTATCGAGG CATGTGAATT TTCTGAGGGA AATCTTGTCA TTATAGAAGA TTAAACTGCA 69601 | ||| |||| ||||||| || || ||||| | | |||||| || | ||| || | ||||| TTTATAGAGG CATGTGATTT TTTGTAGGGA AGTTTTGTCA TTTTGAAAGG TTCACCTGCA 418 TAGCACTTGC TTCTGTCAAG TTTTAACTAG ACAAATCACT AAAGACAA-C TGAAATTTGT 69542 || ||||| | ||||| | ||| | || |||||| | |||||||| | |||||||| AGGCGCTTGC ATTTGTCAGG TTTGGGCAAG CCAAATCCTT AAAGACAATC GAAAATTTGT 478 TTACTAGTGG TGAGAGCTGA AATGTTGTTG CTTGCCATTA AACATGCCAA TTCAGATGAG 69482 |||||||||| |||||| || ||||||||| || |||||| |||||||||| |||||||||| TTACTAGTGG AGAGAGCCGA AATGTTGTTA CTAACCATTA AACATGCCAA TTCAGATGAG 538 ATTTTGCCTT CTAAAGAATG TGCCGACTTT AGAATGTGCC GAGCAGTCTA CATTTGATCT 69422 |||| ||||| ||||||||| | ||||||| |||||||||| |||||||| |||||||||| ATTTAGCCTT CTAAAGAATA TCACGACTTT AGAATGTGCC AAGCAGTCTC CATTTGATCT 598 GAATATCTGA TGGTATGGTG AACGAATATA TGTAAGCCAT CTGAGACGAA TGATTTTCAA 69362 ||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GAAATCCTGA TGGTATGGTG AACGAATATA TGTAAGCCAT CTGAGACGAA TGATTTTCCA 658 GATTTGCTGG GTATAAATAA ATAGATATCG TAAGTACTAT GTGAATTGAT GTTCCTAATG 69302 |||||||||| ||||||| || | | |||||| |||||| ||| |||||||||| |||||||||| GATTTGCTGG GTATAAAAAA AAAAATATCG TAAGTAATAT GTGAATTGAT GTTCCTAATG 718 TTGAATATGA GATAACTGTA GGTTTTAAAC TGAAATTACT TCTTTGTTCA TCAAGGAAGG 69242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATATGA GATAACTGTA GGTTTTAAAC TGAAATTACT TCTTTGTTCA TCAAGGAAGG 778 TTTAGTATTT TGGTTATATG GAGCTGCCAG TGTTTGATAG TATTTATAAT TTTATACATT 69182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTATTT TGGTTATATG GAGCTGCCAG TGTTTGATAG TATTTATAAT TTTATACATT 838 ACACTGTTAT TATCTTCTTG GCCTA 69157 ||||||| || |||||| | ||||| ACACTGTAAT AATCTTC-CG GCCTA 862 hqPGS_C08HBa0235H18.1-_SGN-U338980- (70017 69157) ******************************************************************************** EST sequence 63 +strand 837 n (File: SGN-U314693+) 1 AAATGTGTAA TAGCTTTTAT GAACCACACC AAACCAGCTA AAAGATGCTG TCTTCAAACT 61 AGAAGCTCGT GGTATGAATG CTGCAGAATT ACATGGTGAT CTTAGCAAAC TTGTGAGATC 121 AACAATCTTA AAGAAGTTCA GAAATGGGGA GATTAGAGTG CTGCTAACGA ATGAGCTTTC 181 AGCTAGAGGC TTGGATTTAC CTGAATGTGA TCTTGTAGTT AATCTGGGGT TACCTACTGA 241 CTCGGTTCAT TATGCTCATC GAGCTGGTCG TACGGGCAGG CTTGGCCGCA AGGGCACGGT 301 AGTAACCATA TGTGAAGAGT CAGAAGTCTT TGTGGTAAAA AAGCTACAGA AGCAACTTTC 361 CCTCTCTATC GAGGCATGTG AATTTTCTGA GGGAAATCTT GTCATTATAG AAGATTAAAC 421 TGCATAGCAC TTGCTTCTGT CAAGTTTTAA CTAGACAAAT CACTAAAGAC AACTGAAATT 481 TGTTTACTAG TGGTGAGAGC TGAAATGTTG TTGCTTGCCA TTAAACATGC CAATTCAGAT 541 GAGATTTTGC CTTCTAAAGA ATGTGCCGAC TTTAGAATGT GCCGAGCAGT CTACATTTGA 601 TCTGAATATC TGATGGTATG GTGAACGAAT ATATGTAAGC CATCTGAGAC GAATGATTTT 661 CAAGATTTGC TGGGTATAAA TAAATAGATA TCGTAAGTAC TATGTGAATT GATGTTCCTA 721 ATGTTGAATA TGAGATAACT GTAGGTTTTA AACTGAAATT ACTTCTTTGT TCATCAAGGA 781 AGGTTTAGTA TTTTGGTTAT ATGGAGCTGC CAGTGTTTTA TAGTATTGAA AAAAAAA Predicted gene structure (within gDNA segment 70623 to 68407): Exon 1 70023 69193 ( 831 n); cDNA 1 832 ( 832 n); score: 0.991 MATCH C08HBa0235H18.1- SGN-U314693+ 0.991 831 0.993 C PGS_C08HBa0235H18.1-_SGN-U314693+ (70023 69193) Alignment (genomic DNA sequence = upper lines): AAATGTGTAA TAGCTTTTAT GAACCACA-C AAAACAGCTA AAAGATGCTG TCTTCAAACT 69965 |||||||||| |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| AAATGTGTAA TAGCTTTTAT GAACCACACC AAACCAGCTA AAAGATGCTG TCTTCAAACT 60 AGAAGCTCGT GGTATGAATG CTGCAGAATT ACATGGTGAT CTTAGCAAAC TTGTGAGATC 69905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTCGT GGTATGAATG CTGCAGAATT ACATGGTGAT CTTAGCAAAC TTGTGAGATC 120 AACAATCTTA AAGAAGTTCA GAAATGGGGA GATTAGAGTG CTGCTAACGA ATGAGCTTTC 69845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATCTTA AAGAAGTTCA GAAATGGGGA GATTAGAGTG CTGCTAACGA ATGAGCTTTC 180 AGCTAGAGGC TTGGATTTAC CTGAATGTGA TCTTGTAGTT AATCTGGGGT TACCTACTGA 69785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAGAGGC TTGGATTTAC CTGAATGTGA TCTTGTAGTT AATCTGGGGT TACCTACTGA 240 CTCGGTTCAT TATGCTCATC GAGCTGGTCG TACGGGCAGG CTTGGTCGCA AGGGCACGGT 69725 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CTCGGTTCAT TATGCTCATC GAGCTGGTCG TACGGGCAGG CTTGGCCGCA AGGGCACGGT 300 AGTAACCATA TGTGAAGAGT CAGAAGTCTT TGTGGTAAAA AAGCTACAGA AGCAACTTTC 69665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAACCATA TGTGAAGAGT CAGAAGTCTT TGTGGTAAAA AAGCTACAGA AGCAACTTTC 360 CCTCTCTATC GAGGCATGTG AATTTTCTGA GGGAAATCTT GTCATTATAG AAGATTAAAC 69605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTCTATC GAGGCATGTG AATTTTCTGA GGGAAATCTT GTCATTATAG AAGATTAAAC 420 TGCATAGCAC TTGCTTCTGT CAAGTTTTAA CTAGACAAAT CACTAAAGAC AACTGAAATT 69545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATAGCAC TTGCTTCTGT CAAGTTTTAA CTAGACAAAT CACTAAAGAC AACTGAAATT 480 TGTTTACTAG TGGTGAGAGC TGAAATGTTG TTGCTTGCCA TTAAACATGC CAATTCAGAT 69485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTACTAG TGGTGAGAGC TGAAATGTTG TTGCTTGCCA TTAAACATGC CAATTCAGAT 540 GAGATTTTGC CTTCTAAAGA ATGTGCCGAC TTTAGAATGT GCCGAGCAGT CTACATTTGA 69425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTTTGC CTTCTAAAGA ATGTGCCGAC TTTAGAATGT GCCGAGCAGT CTACATTTGA 600 TCTGAATATC TGATGGTATG GTGAACGAAT ATATGTAAGC CATCTGAGAC GAATGATTTT 69365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAATATC TGATGGTATG GTGAACGAAT ATATGTAAGC CATCTGAGAC GAATGATTTT 660 CAAGATTTGC TGGGTATAAA TAAATAGATA TCGTAAGTAC TATGTGAATT GATGTTCCTA 69305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATTTGC TGGGTATAAA TAAATAGATA TCGTAAGTAC TATGTGAATT GATGTTCCTA 720 ATGTTGAATA TGAGATAACT GTAGGTTTTA AACTGAAATT ACTTCTTTGT TCATCAAGGA 69245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGAATA TGAGATAACT GTAGGTTTTA AACTGAAATT ACTTCTTTGT TCATCAAGGA 780 AGGTTTAGTA TTTTGGTTAT ATGGAGCTGC CAGTGTTTGA TAGTATTTAT AA 69193 |||||||||| |||||||||| |||||||||| |||||||| | ||||||| | || AGGTTTAGTA TTTTGGTTAT ATGGAGCTGC CAGTGTTTTA TAGTATTGAA AA 832 hqPGS_C08HBa0235H18.1-_SGN-U314693+ (70023 69193) ******************************************************************************** EST sequence 64 +strand 985 n (File: SGN-U314694+) 1 CTGAAATGTT GTTGCTTGCC ATTAAACATG CCAATTCAGA TGAGATTTTG CCTTCTAAAG 61 AATGTGCCGA CTTTAGAATG TGCCGAGCAG TCTACATTTG ATCTGAATAT CTGATGGTAT 121 GGTGAACGAA TATATGTAAG CCATCTGAGA CGAATGATTT TCAAGATTTG CTGGGTATAA 181 ATAAATAGAT ATCGTAAGTA CTATGTGAAT TGATGTTCCT AATGTTGAAT ATGAGATAAC 241 TGTAGGTTTT AAACTGAAAT TACTTCTTTG TTCATCAAGG AAGGTTTAGT ATTTTGGTTA 301 TATGGAGCTG CCAGTGTTCA GCTGCTGTTG CCACCCGCGG CAATGGTGCA CAAGCTAGCA 361 TGGTTGCACC CTTCACTGGA CTCAAGTCCA CTGCTTCTTT CCCTGTTTCA AGGAAGCAAA 421 ACCTTGACAT TACCTCCATT GCTAGCAACG GTGGAAGAGT CAGTTGCATG CAGGTGTGGC 481 CACCAATTAA CATGAAGAAG TACGAGACTC TGTCGTACCT TCCTGATTTG TCCGACGAGC 541 AATTGCTCAG CGAAATTGAG TACCTATTGA AAAATGGATG GGTTCCTTGC TTGGAATTCG 601 AGACTGAGCA CGGATTTGTG TACCGTGAGA ACCATAAGTC ACCAGGATAC TACGATGGCA 661 GATACTGGAC CATGTGGAAG TTGCCCATGT TTGGGTGCAC TGATGCAACC CAGGTCTTGG 721 CTGAGGTGCA GGAGGCAAAG AAGGCTTACC CTCAGGCATG GGTCCGTATC ATCGGATTCG 781 ACAATGTTCG TCAAGTGCAG TGCATCAGTT TCATCGCTTA CAAGCCCGAA GGATACTAAA 841 ATGCCAATTT TTAATTATGT AATGTATAAC TGACCCTATG TATTTAGGGG AAGCTTGTTT 901 GAATCCTCCT TAAAGTTTTT CTCTGGAGAA ACTGTAGTAA TTTTACTTTG TTGTGTTCCC 961 TTCAAAAAAA AAAAAAAAAA ACTCG Predicted gene structure (within gDNA segment 70125 to 61328): Exon 1 69525 69208 ( 318 n); cDNA 1 318 ( 318 n); score: 1.000 PPA cDNA 964 982 MATCH C08HBa0235H18.1- SGN-U314694+ 1.000 318 0.323 C PGS_C08HBa0235H18.1-_SGN-U314694+ (69525 69208) Alignment (genomic DNA sequence = upper lines): CTGAAATGTT GTTGCTTGCC ATTAAACATG CCAATTCAGA TGAGATTTTG CCTTCTAAAG 69466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAATGTT GTTGCTTGCC ATTAAACATG CCAATTCAGA TGAGATTTTG CCTTCTAAAG 60 AATGTGCCGA CTTTAGAATG TGCCGAGCAG TCTACATTTG ATCTGAATAT CTGATGGTAT 69406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTGCCGA CTTTAGAATG TGCCGAGCAG TCTACATTTG ATCTGAATAT CTGATGGTAT 120 GGTGAACGAA TATATGTAAG CCATCTGAGA CGAATGATTT TCAAGATTTG CTGGGTATAA 69346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAACGAA TATATGTAAG CCATCTGAGA CGAATGATTT TCAAGATTTG CTGGGTATAA 180 ATAAATAGAT ATCGTAAGTA CTATGTGAAT TGATGTTCCT AATGTTGAAT ATGAGATAAC 69286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATAGAT ATCGTAAGTA CTATGTGAAT TGATGTTCCT AATGTTGAAT ATGAGATAAC 240 TGTAGGTTTT AAACTGAAAT TACTTCTTTG TTCATCAAGG AAGGTTTAGT ATTTTGGTTA 69226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGGTTTT AAACTGAAAT TACTTCTTTG TTCATCAAGG AAGGTTTAGT ATTTTGGTTA 300 TATGGAGCTG CCAGTGTT 69208 |||||||||| |||||||| TATGGAGCTG CCAGTGTT 318 hqPGS_C08HBa0235H18.1-_SGN-U314694+ (69525 69208) ******************************************************************************** EST sequence 28 +strand 1375 n (File: SGN-U328079+) 1 GACACTTCTA GAACAAAAAC GCAAATTTCT CATTTTTCTC GTCTTCTCGA TCTGTTTAGA 61 GGGGGTTTGG ATCTGAATTG ACGGCAACGG TGGATGCTAT GGTGCCATCG TCGGTTGATT 121 GTACCGGCGA ATCTGCCACC GGGGAGAATC AGAGATCTCT TCCGACGCCA TTTTTGACGA 181 AAACTTATCA GCTTGTCGAT GATCCTGCTA TGGATGAGTT GATCTCGTGG AATGAAGATG 241 GAACGACATT TATTGTTTGG AAACCTGCGG AGTTTGCTAG GGATTTGCTT CCCAAATGTT 301 TTAAGCATAA TAATTTTTCC AGTTTTGTTC GGCAGCTTAA TACTTACGGA TTTAGAAAAG 361 TTGTACCTGA TCGATGGGAA TTCGCAAATG ACTGTTTCCG TAGAGGTGAG AAAGGACTAC 421 TTCGTGACAT TCAACGCCGG AAAATTTCAC CGGCAGGTGC TGCGGTTGTT GCACCAGCAG 481 TAGTAACGGT GAATGCTGCA CAAGCGGTGA CGGTAGCGGT AGCACCAGCG GTCAGGGTGG 541 TTTCTTCATC GAATTCCGGT GATGAGCAGG CGTTCTCATC GAACTCATCT GGTGCCGCAG 601 CTGGAGCGGC GATGTTAAGG ACCACTACGT GTACGACGAC GCCGGAGCTT ATAGAGGAGA 661 ACGAACGGTT GAGAAAGGAG AACGCACAAC TAAATCAGGA ATTGAATCGG TTGAGAAGTT 721 TATGCAGTAA CGTATACAAT CTGATGTCCA ATTACACGGC GAATCCGGCG GATATACCGG 781 CAGGTATACT AGGAGGACGA GCTTTGGAAT TGCTTCGTAC GGGGCAAGTT GACGGCGGCG 841 GTGCGGCCAT CACAGCGGCG GAGAGCAGCG GCTTCAAGGC GGATGAAGAT ATGAGCCCAC 901 GGTTGTTTGG TGTATCAATT GGGGTAAAGC GCGTGAGGAG AAGCAGCGAA GAAGAATCTG 961 AGGATCAGGA TCAAGTACAA CCGCATGGAT CAGACATGAA ATCAGAGCCG TTAGATTCAG 1021 GAAGTGCTCA ACATGATGAT CAGCCATGGA TTGATCGATT AGATTTAGGG TGTTGATTTC 1081 CCTTGGAGGG TGGGGTCCAC AGAAGCACTT CGGCATTGAT GACCAACACG TGTACAATGG 1141 AAGATTGTTG GTTGTTTCTG GTGGTTTCTA GAAGAAGTGA GAAATCAAGT CAAATGGTTT 1201 TTTGAGAAGG CCCCAAAAGA GGTGGAAAAG GAGAAAAACG AAGTGGCTTT TTTAATATGT 1261 TTTCATAATT GGATTGGAAA AAATAGAGGG GGCTGAGCTG GTTGGTTGAA AAAGATGACA 1321 AATGTTGGAA ATGATAGTCA AATGTATTAA TTAGTTGGGA TTAGGGAAAT ATTTA Predicted gene structure (within gDNA segment 74696 to 77388): Exon 1 75323 75669 ( 347 n); cDNA 1 347 ( 347 n); score: 0.997 Intron 1 75670 75750 ( 81 n); Pd: 0.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75751 76778 (1028 n); cDNA 348 1375 (1028 n); score: 1.000 MATCH C08HBa0235H18.1+ SGN-U328079+ 0.999 1375 1.000 C PGS_C08HBa0235H18.1+_SGN-U328079+ (75323 75669,75751 76778) Alignment (genomic DNA sequence = upper lines): GAAACTTCTA GAACAAAAAC GCAAATTTCT CATTTTTCTC GTCTTCTCGA TCTGTTTAGA 75382 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACTTCTA GAACAAAAAC GCAAATTTCT CATTTTTCTC GTCTTCTCGA TCTGTTTAGA 60 GGGGGTTTGG ATCTGAATTG ACGGCAACGG TGGATGCTAT GGTGCCATCG TCGGTTGATT 75442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGGTTTGG ATCTGAATTG ACGGCAACGG TGGATGCTAT GGTGCCATCG TCGGTTGATT 120 GTACCGGCGA ATCTGCCACC GGGGAGAATC AGAGATCTCT TCCGACGCCA TTTTTGACGA 75502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCGGCGA ATCTGCCACC GGGGAGAATC AGAGATCTCT TCCGACGCCA TTTTTGACGA 180 AAACTTATCA GCTTGTCGAT GATCCTGCTA TGGATGAGTT GATCTCGTGG AATGAAGATG 75562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTATCA GCTTGTCGAT GATCCTGCTA TGGATGAGTT GATCTCGTGG AATGAAGATG 240 GAACGACATT TATTGTTTGG AAACCTGCGG AGTTTGCTAG GGATTTGCTT CCCAAATGTT 75622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGACATT TATTGTTTGG AAACCTGCGG AGTTTGCTAG GGATTTGCTT CCCAAATGTT 300 TTAAGCATAA TAATTTTTCC AGTTTTGTTC GGCAGCTTAA TACTTACGTA AGATTAGGTT 75682 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTAAGCATAA TAATTTTTCC AGTTTTGTTC GGCAGCTTAA TACTTAC... .......... 347 TAATTTTTTT TTAAAAAAAT TATATAATTT TTGATTGATT TAACTGATTT TGTTGAATTT 75742 .......... .......... .......... .......... .......... .......... 347 TTGTTTAGGG ATTTAGAAAA GTTGTACCTG ATCGATGGGA ATTCGCAAAT GACTGTTTCC 75802 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GG ATTTAGAAAA GTTGTACCTG ATCGATGGGA ATTCGCAAAT GACTGTTTCC 399 GTAGAGGTGA GAAAGGACTA CTTCGTGACA TTCAACGCCG GAAAATTTCA CCGGCAGGTG 75862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGGTGA GAAAGGACTA CTTCGTGACA TTCAACGCCG GAAAATTTCA CCGGCAGGTG 459 CTGCGGTTGT TGCACCAGCA GTAGTAACGG TGAATGCTGC ACAAGCGGTG ACGGTAGCGG 75922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGGTTGT TGCACCAGCA GTAGTAACGG TGAATGCTGC ACAAGCGGTG ACGGTAGCGG 519 TAGCACCAGC GGTCAGGGTG GTTTCTTCAT CGAATTCCGG TGATGAGCAG GCGTTCTCAT 75982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCACCAGC GGTCAGGGTG GTTTCTTCAT CGAATTCCGG TGATGAGCAG GCGTTCTCAT 579 CGAACTCATC TGGTGCCGCA GCTGGAGCGG CGATGTTAAG GACCACTACG TGTACGACGA 76042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACTCATC TGGTGCCGCA GCTGGAGCGG CGATGTTAAG GACCACTACG TGTACGACGA 639 CGCCGGAGCT TATAGAGGAG AACGAACGGT TGAGAAAGGA GAACGCACAA CTAAATCAGG 76102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGAGCT TATAGAGGAG AACGAACGGT TGAGAAAGGA GAACGCACAA CTAAATCAGG 699 AATTGAATCG GTTGAGAAGT TTATGCAGTA ACGTATACAA TCTGATGTCC AATTACACGG 76162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGAATCG GTTGAGAAGT TTATGCAGTA ACGTATACAA TCTGATGTCC AATTACACGG 759 CGAATCCGGC GGATATACCG GCAGGTATAC TAGGAGGACG AGCTTTGGAA TTGCTTCGTA 76222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATCCGGC GGATATACCG GCAGGTATAC TAGGAGGACG AGCTTTGGAA TTGCTTCGTA 819 CGGGGCAAGT TGACGGCGGC GGTGCGGCCA TCACAGCGGC GGAGAGCAGC GGCTTCAAGG 76282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGGCAAGT TGACGGCGGC GGTGCGGCCA TCACAGCGGC GGAGAGCAGC GGCTTCAAGG 879 CGGATGAAGA TATGAGCCCA CGGTTGTTTG GTGTATCAAT TGGGGTAAAG CGCGTGAGGA 76342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATGAAGA TATGAGCCCA CGGTTGTTTG GTGTATCAAT TGGGGTAAAG CGCGTGAGGA 939 GAAGCAGCGA AGAAGAATCT GAGGATCAGG ATCAAGTACA ACCGCATGGA TCAGACATGA 76402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCAGCGA AGAAGAATCT GAGGATCAGG ATCAAGTACA ACCGCATGGA TCAGACATGA 999 AATCAGAGCC GTTAGATTCA GGAAGTGCTC AACATGATGA TCAGCCATGG ATTGATCGAT 76462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAGAGCC GTTAGATTCA GGAAGTGCTC AACATGATGA TCAGCCATGG ATTGATCGAT 1059 TAGATTTAGG GTGTTGATTT CCCTTGGAGG GTGGGGTCCA CAGAAGCACT TCGGCATTGA 76522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATTTAGG GTGTTGATTT CCCTTGGAGG GTGGGGTCCA CAGAAGCACT TCGGCATTGA 1119 TGACCAACAC GTGTACAATG GAAGATTGTT GGTTGTTTCT GGTGGTTTCT AGAAGAAGTG 76582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCAACAC GTGTACAATG GAAGATTGTT GGTTGTTTCT GGTGGTTTCT AGAAGAAGTG 1179 AGAAATCAAG TCAAATGGTT TTTTGAGAAG GCCCCAAAAG AGGTGGAAAA GGAGAAAAAC 76642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATCAAG TCAAATGGTT TTTTGAGAAG GCCCCAAAAG AGGTGGAAAA GGAGAAAAAC 1239 GAAGTGGCTT TTTTAATATG TTTTCATAAT TGGATTGGAA AAAATAGAGG GGGCTGAGCT 76702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTGGCTT TTTTAATATG TTTTCATAAT TGGATTGGAA AAAATAGAGG GGGCTGAGCT 1299 GGTTGGTTGA AAAAGATGAC AAATGTTGGA AATGATAGTC AAATGTATTA ATTAGTTGGG 76762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGGTTGA AAAAGATGAC AAATGTTGGA AATGATAGTC AAATGTATTA ATTAGTTGGG 1359 ATTAGGGAAA TATTTA 76778 |||||||||| |||||| ATTAGGGAAA TATTTA 1375 hqPGS_C08HBa0235H18.1+_SGN-U328079+ (75323 75669,75751 76778) ******************************************************************************** EST sequence 23 +strand 3068 n (File: SGN-U316082+) 1 GACCGATTCT CTTCTTCTCA TCATGGCTCC TGGCAGCTCC GTCTTGTGCC CTCGTTGGGT 61 CTAGATTCTC GATCACCATT TTGGAAAATT CATTCGCTCT CCGGTGACAT AATAGGGCCA 121 CAGGTGCTTA GAATTTGTGT AGGGTTGCAT TCTGTGAAAG TGTGAAGATA CTGAAATCAC 181 AATGAACCAA CGAAGCACAA TCGATCTGGA ACATGGATGG GACTTCATGC AAAGGGGCAT 241 TACAAAGCTG AAGAACATTC TAGAAGGGCT GCCTGAGCCT CAATTCAGCT CAGAGGACTA 301 TATGATGCTA TATACGACAA TTTACAACAT GTGTACTCAA AAGCCCCCAC ATGATTATTC 361 TCAACAGCTG TATGACAAAT ATCGTGAAGC TTTTGAAGAA TATATCACAA CAACGGTATT 421 GCCTTCTTTG AGAGAAAAAC ATGACGAGTT TATGTTGCGA GAGTTGGTAA AAAGGTGGTC 481 AAATCATAAA GTCATGGTCA GATGGTTGTC AAGATTCTTC CATTACCTTG ACCGGTATTT 541 CATTGCCCGG AGATCTCTGC CGGGGCTTAA TGAAGTTGGA CTAACTTGCT TCCGCGATCA 601 GGTTTACCAA GAGTTGAATG GAAAAGTCAG GGATGCTGTT ATATCTCTGA TTGATCAAGA 661 GCGTGAGGGA GAGCAAATTG ACAGAGCTCT ACTTAAGAAT GTGCTTGATA TATTTGTCGA 721 AATTGGAATG GGGTTAATGG ATTATTATGA GAATGATTTT GAAGCTGCAA TGCTCAAGGA 781 CACAGCGGCT TATTATTCTC GCAAAGCTTC TAATTGGATC CTCGAAGATT CATGTCCGGA 841 TTATATGCTG AAAGCCGAGG AGTGCTTGAA ACGGGAGAAG GATAGGGTCT CTCATTATCT 901 CCATTCAAGC AGCGAGACGA AGTTGCTTGA GAAAGTGCAA CATGAGTTGT TGTCTGTGTA 961 TGCCACTCAA CTTCTTGAGA AGGAGCACTC TGGATGCCAT GCGTTACTGA GAGATGATAA 1021 GGTTGAAGAT TTATCAAGGA TGTATAGGCT CTTTTCTAAG ATTTCTCGAG GCTTAGACCC 1081 TGTGGCCAAT ATTTTTAAGC AGCATGTTAC TGCTGAAGGT ACAGCTTTGG TAAAACAGGC 1141 TGAAGATGCT GCTAGCAATA AAAAGGCAGA GAAGAGAGAT GTGGTTGGTT TGCAGGAACA 1201 GGTTTTTGTT CGGAAAGTGA TTGAACTTCA TGATAAATAT TTGGCTTATG TGAATAACTG 1261 TTTCCAAAAC CACACACTTT TTCACAAGGC GCTTAAAGAA GCTTTTGAGC TTTTCTGCAA 1321 CAAGGGTGTT GCTGGTAGCT CAAGCGCTGA ACTTCTTGCC ACCTTCTGTG ACAACATTCT 1381 CAAAAAAGTA GGGAGTGAGA AATTGAGTGA TGAAGCTATT GAAGAAACGT TGGAAAAGGT 1441 GGTAAAGCTA CTAGCTTATA TTAGTGATAA GGACTTGTTT GCAGAATTCT ATAGGAAAAA 1501 GCTAGCCCGG CGGTTGTTAT TTGATAAGAG TGCCAATGAT GAACATGAAA GAAGTATCCT 1561 AACAAAGTTG AAGCAGCAGT GTGGGGGGCA GTTCACATCA AAGATGGAGG GAATGGTCAC 1621 AGATTTGACA TTGGCAAGGG AAAATCAAGC CAGCTTCGAG GAGTATTTGA GCAATAATCC 1681 AATAGCAAAT CCAGGAATTG ACTTGACGGT GACTGTCTTG ACTACTGGCT TCTGGCCTAG 1741 CTACAAGTCT TTTGATCTCA ACCTCCCAGC AGAAATGGTT AGGTGCGTTG AAGTATTTAA 1801 GGAGTTCTAT CAAACAAAAA CAAAGCACAG GAAACTTACG TGGATATACT CTTTGGGAAC 1861 TTGCAACATA AATGGAAAAT TTGAGCCAAA AACTATTGAG CTCGTTGTCA CTACTTATCA 1921 GGCTTCTGCT CTGCTGCTCT TTAATGCATC AGATAGATTG AGTTATCAGG AAATCATGAC 1981 GCAATTAAAC CTATCAGATG ATGATGTTGT TCGGCTTCTT CATTCCCTTT CATGTGCGAA 2041 GTACAAGATA CTCAACAAGG AGCCAAGCAC CAAAACAATT TCTCCGACTG ATGTCTTTGA 2101 GTTCAACTCA AAGTTCACTG ACAAAATGAG GAGGATCAAG ATACCTCTCC CTCCTGTTGA 2161 TGAGAAGAAA AAGGTAATTG AAGACGTTGA CAAGGATAGG CGGTATGCTA TAGATGCTTC 2221 AATTGTGCGT ATTATGAAGA GCCGTAAAGT ATTGGGCTAC CAGCAACTAG TCATGGAGTG 2281 CGTTGAGCAG TTGGGGCGCA TGTTCAAGCC TGATGTCAAA GCTATCAAGA AGAGAATCGA 2341 AGATTTGATA ACTAGAGATT ACCTAGAGAG GGACAAAGAT AATCCAAACC TGTTCAAGTA 2401 CTTGGCATGA TTATTGCAGA TCATAGTGAA TGAGTGATGT TTATATGAAC TTTTGCAATC 2461 GACATAGGAG GAGAAACATG CTACCCGAGA TGAAGACATA TTTCTGTAAC TCCTCCTACC 2521 TCCCTGGACC TTGGATTGCC TTGCACCAGG AGCTTGAAAC ATTTTGTACA AATGGTTAAG 2581 ATCTCAGGAA AAAGTAGAAT TGCCTCTCAG ATACTTGAGA TGCGATTGCC TTAACTTCTT 2641 CCAATCCTAT ATGGCCCTTT AGCTTGCTCT ACTATGTGTT TTGTCGGCTA CCTGTTCGAG 2701 TTCAAGTAAA TGTAATATTC TACTCAACAG CATCTTATAA TACATTCTCT AAAAAAAAAA 2761 AAAAAAAACT CGAGATAGAT TGTGAAAGTA GACAAAGAGA AAAACAACCT GGGGGGGGGG 2821 CCCGGTTCCC ATTACCCCAT AGAAAAAGCT ACATAAAGCT AAGCTGGTTG GTATGTTTTG 2881 TATGACAAAT GTTGGAAATG ATAGTCAAAT GTATTAGTTG GGGGGGATTA GGGAAATATT 2941 TATGTTACAA TTTAACGTGC CAACTAATTT TTGGCTAAGG AAATTATTTG TGCATAATTG 3001 AAACATTAAT AATGTTGTAA CTTTATGTTT AGAAAAAAAT ACCTGGGTAA ATTTACTGAA 3061 AAAAAAAA Predicted gene structure (within gDNA segment 62536 to 77538): Exon 1 65220 65224 ( 5 n); cDNA 2664 2668 ( 5 n); score: 1.000 Intron 1 65225 66386 (1162 n); Pd: 0.000 (s: 0), Pa: 0.970 (s: 0) Exon 2 66387 66396 ( 10 n); cDNA 2669 2677 ( 9 n); score: 0.500 Intron 2 66397 66623 ( 227 n); Pd: 0.900 (s: 0), Pa: 0.979 (s: 0) Exon 3 66624 66644 ( 21 n); cDNA 2678 2698 ( 21 n); score: 0.667 Intron 3 66645 67441 ( 797 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 67442 67473 ( 32 n); cDNA 2699 2728 ( 30 n); score: 0.656 Intron 4 67474 70548 (3075 n); Pd: 0.900 (s: 0), Pa: 0.813 (s: 0) Exon 5 70549 70556 ( 8 n); cDNA 2729 2736 ( 8 n); score: 0.875 Intron 5 70557 72020 (1464 n); Pd: 0.000 (s: 0), Pa: 0.795 (s: 0.61) Exon 6 72021 72064 ( 44 n); cDNA 2737 2776 ( 40 n); score: 0.614 Intron 6 72065 75750 (3686 n); Pd: 0.701 (s: 0.61), Pa: 0.999 (s: 0) Exon 7 75751 75761 ( 11 n); cDNA 2777 2787 ( 11 n); score: 0.727 Intron 7 75762 76624 ( 863 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.52) Exon 8 76625 76896 ( 272 n); cDNA 2788 3060 ( 273 n); score: 0.822 MATCH C08HBa0235H18.1+ SGN-U316082+ 0.822 403 0.131 C PGS_C08HBa0235H18.1+_SGN-U316082+ (65220 65224,66387 66396,66624 66644,67442 67473,70549 70556,72021 72064,75751 75761,76625 76896) Alignment (genomic DNA sequence = upper lines): TTGCTGCTGT GGTCCATTTT GCTGGGCTTA AGGCTGTTGG AGAGAGTGTT GTTCAGCCCT 65279 ||||| TTGCT..... .......... .......... .......... .......... .......... 2668 TCCTTTACTT TGAGAACAAT CTGATTGGAT CAATAACTTT GTATTCAGTC ATGGCCAAGT 65339 .......... .......... .......... .......... .......... .......... 2668 ATAATTGTAA GAAGGTACGT CTTTCGATAT AATTTTGGTT TCATATAAGT GAAATATGCT 65399 .......... .......... .......... .......... .......... .......... 2668 ATGCATTCAG GGCAAGTTGG AATCTGTTAT GTTCATGATT GCTGCTACCC TTATAGTTTT 65459 .......... .......... .......... .......... .......... .......... 2668 GGTAGAATTT GAAGGCTAAT AGTAAACATG GTTCTTCTTT CAAGAACTCA TTTAGCCTCA 65519 .......... .......... .......... .......... .......... .......... 2668 AGAACATGGG CGTTGCTAGG GGGCGGAAGG AGGTTCAGTT GTTCATGGTG TGGCGAACTG 65579 .......... .......... .......... .......... .......... .......... 2668 TTGGATTCGT AGGAGGGTAT TGAGTAGGTT GGTCAGGTTG ATAACTTTTT AATTTCATTG 65639 .......... .......... .......... .......... .......... .......... 2668 TGTGAAATTG CAGTTGGTTT TTTCATCATC TGCAACAGTT TATGGTCAGC CTGAAAAGGT 65699 .......... .......... .......... .......... .......... .......... 2668 TCCCTGTGTG GAGGATTTTG AATTGAAGGC TATGAATCCT TATGGTCGAA CAAAGGTTTG 65759 .......... .......... .......... .......... .......... .......... 2668 TATTGTCAAT AATTGTCTCT TAATTTCATA CTGATTAGAG ATAGTTCATT TGATAGTATC 65819 .......... .......... .......... .......... .......... .......... 2668 TCAGTCTGTA AACTATGTGA CCGAACCTGT GTTTTGTTCT ATTTAATTAG CTATTTCTTG 65879 .......... .......... .......... .......... .......... .......... 2668 AAGATATTGC ACGGGATATC CAGAAGGCTG ATCAAGAATG GAATATCATA CTGTTGAGGT 65939 .......... .......... .......... .......... .......... .......... 2668 ATTTCAACCC GGTAGGAGCT CATGAAAGTG GCAAACTCGG GGAAGATCCA AAGGGCATTC 65999 .......... .......... .......... .......... .......... .......... 2668 CGAACAATCT TATGCCTTAC ATTCAGCAAG TAGCTGTTGG TAGATTGCCG GAGTTGAATG 66059 .......... .......... .......... .......... .......... .......... 2668 TATATGGCAA CGACTACCCT ACACCTGATG GTACCGCGGT AGGTTATGTT TGGCTGATTC 66119 .......... .......... .......... .......... .......... .......... 2668 TTTGTGACTG TAGCTTCTTT GTATGAGGAA AAAAAAGAAA CTGAATGACT CAACATACCA 66179 .......... .......... .......... .......... .......... .......... 2668 TCTGTGACTA GAGTACATAC GAAAGAAACA GAAAATGAAG AGCGAGCAGA AGTTAACAGC 66239 .......... .......... .......... .......... .......... .......... 2668 CGGAACAACT TATTGAACTA CTAATAATGA AGAGAAAAGA CAGAAATATA GTTGAATATC 66299 .......... .......... .......... .......... .......... .......... 2668 CAAATATACT CATGACATGA ATCACCTTTA ACATATTTTG CTTCTTGTAC TTGACTGTTA 66359 .......... .......... .......... .......... .......... .......... 2668 AATGATCTTT AATCTATTTC TCACTAGATA CGAGATTATA TCCATGTTAT GGATTTGGCG 66419 || | | | .......... .......... .......CTA CTA-TGT... .......... .......... 2677 GACGGTCATG TTGTTGCACT TCAGAGACTT CTAAGGCAGA ATCACATAGG TAAGTAATCC 66479 .......... .......... .......... .......... .......... .......... 2677 TTTTCAAAGC AAAGTTTAGA TCTGAATTCT TTTGACGTTA GTTCGAGCTA ATGATACCCT 66539 .......... .......... .......... .......... .......... .......... 2677 TTTGTATGAT TTTGACATTT CATATATTTC GGTTGAAGGT AACATCTTGT GACATTTGTT 66599 .......... .......... .......... .......... .......... .......... 2677 CTTCTGTTTA ATGGTTTGCA TTAGGTTGTG TTGCCTACAA TTTGGGTACT GGAAAAGGCA 66659 ||| || | | |||| || | .......... .......... ....GTTTTG TCGGCTACCT GTTCG..... .......... 2698 AATCTGTCCT AGAGATGGTT GGTGCCTTTG AAAAGGCGTC TGGAAAGGTC TCTTAACGGA 66719 .......... .......... .......... .......... .......... .......... 2698 ACACGCTAAA CCATACTTAG TAGAATTTGA ACAAAGCAAC AATCTCATAT TATGTTGTAC 66779 .......... .......... .......... .......... .......... .......... 2698 TAATATATTA TTTTTGTTCC AGAAAATCCC GCTTAAAATG TGTCCAAGAA GACCAGGAGA 66839 .......... .......... .......... .......... .......... .......... 2698 TGCCACTGCT GTTTACGCAT CTACTGAAAA AGCTGAGAAG GAGCTCGGTT GGAAGTAAGT 66899 .......... .......... .......... .......... .......... .......... 2698 AGTAAATGGT TATTTTTCTA TTCTTGGATC AACTGATGCT TGTGCCTAGC AGCCTCATAA 66959 .......... .......... .......... .......... .......... .......... 2698 AGGCTAATCT TCTTGCATCT CATTCATTTC ACCAGTTGAA AGAGAAACTG ATGGTGGGAT 67019 .......... .......... .......... .......... .......... .......... 2698 CAAATCTTTT CTACTTCTTT TCAGGGCAAA ATATGGGATA AATGAGATGT GCAGGGACCA 67079 .......... .......... .......... .......... .......... .......... 2698 GTGGAAATGG GCAAGCCAAA ATCCTTGGGG TTACCAACCA AAGCCTTGAT ATGTTATAAT 67139 .......... .......... .......... .......... .......... .......... 2698 AATAATAATA ATAATACAAG TAGCACTTGG AGTACAAAAC TGTAGTCAAC ATCCTAGTAC 67199 .......... .......... .......... .......... .......... .......... 2698 TTTACATTTC ATGCAAACAT TAGATGTATC CAAGGACAAA AGTGTTCATC CATAATAGTT 67259 .......... .......... .......... .......... .......... .......... 2698 GTTGATGGTT ATGTACTACT AAACCCTGTT GTTGTCTCCC TTAAAGGTTT TATGGGAACT 67319 .......... .......... .......... .......... .......... .......... 2698 TGAATGTTCA TCCTATTATG ATCCCTTCAA CCAAATCTCT TTACTGATTG TAATTCATTC 67379 .......... .......... .......... .......... .......... .......... 2698 AAAAAGAGTA AATGATCTAG TCTACTATGC TATTGAAGGT GTTCAATTCT ATACTTCATT 67439 .......... .......... .......... .......... .......... .......... 2698 GTTGATGAAG TTATGGTTTA TATTTGACTC AAACATATCT TTTAGCTCAG AATAGTTGAC 67499 | | ||| | | | | | |||| |||| ||| ..AGTTCAAG TAAATG-TAA TATTCTACTC -AAC...... .......... .......... 2728 TTTTTTCACC TACTTACATT TAAATTTAGT AGTGGTTAAC CAACTATTCT GTCCTTTGGA 67559 .......... .......... .......... .......... .......... .......... 2728 CAAGACTTAT TACCAGCTAA TTAGTTATCT CTATGCAAAT TTGCTCAATT GGCTGCAAAA 67619 .......... .......... .......... .......... .......... .......... 2728 GTATCCCAGA CTTTTTGGTC AAATTGTTCT TTTGAGAGTA ATCATTTGCT AACAGTTGAG 67679 .......... .......... .......... .......... .......... .......... 2728 GAAAGGAGAG AACTATGAAA GAAGAAGGTA ATGTGATGGT GACTGCTCAG ACAATCATAT 67739 .......... .......... .......... .......... .......... .......... 2728 CTGGTGCTTC TCCTTCTCCT ACATTAACTC CACAACCACC TTTGCCAACA CCATCACCAT 67799 .......... .......... .......... .......... .......... .......... 2728 ATTCGTTCTC AGTGGCATCG ACAAGGTTGA GATCAAGGCC TTCTATATAT GCATATGATC 67859 .......... .......... .......... .......... .......... .......... 2728 TTGCCCTAAG ATCACTGGCA CTTCTGTTCT CTTTCATATC TGCTCTTTCA CTAGCTGTAC 67919 .......... .......... .......... .......... .......... .......... 2728 CATCACCAAC AAGGACAAAA CGAGGAACGA TTTCAAAATT CTGTGATTAC CCACAATTAA 67979 .......... .......... .......... .......... .......... .......... 2728 CGTAAGAATC AACACAGGAT TTCAGGATTT AAACTAAGAC AACATTCAGT TCTATGGTTT 68039 .......... .......... .......... .......... .......... .......... 2728 TGAGAGCTGT TTTTACACTA CTGCAGGTAC TGCTTCAGTG TAAGCGTATT AGCTTTTATC 68099 .......... .......... .......... .......... .......... .......... 2728 TACTCAGCTT TTCAACTCTT CAAAAGAGTT TGTGACATCG CTTATAGAGG TGTCTTGATC 68159 .......... .......... .......... .......... .......... .......... 2728 TCCGATAAGA CCTCTGACTA TCTCAGTTTC ATACTCGATC AGGTATATAC TAACTTTAAT 68219 .......... .......... .......... .......... .......... .......... 2728 AAGCTAGAGA TTACTTCCGA GTCCAAAACC TAAAGGAAGC TGGCTCACTG TTTCACATGT 68279 .......... .......... .......... .......... .......... .......... 2728 AACTACGACC ATAAAATGGT TGCATCCCTA CCTTTAGTTC AAACTAGTAG CAAGAATTTA 68339 .......... .......... .......... .......... .......... .......... 2728 CTCTCTCACT TGGGATTTCG CCTGATGTAT CATCAACATC TACGCTCTAT TATCCACTAA 68399 .......... .......... .......... .......... .......... .......... 2728 CAGTGAAACT TTATGTTGAA CAATAATGGC AAGAAACAGA AATCATCTTA TAGGAAGAAA 68459 .......... .......... .......... .......... .......... .......... 2728 CAAAGAGTAG AAGCATCTTA TTTGAATATC AAGCATCCTA AATTTCATTT CTTCTGAATG 68519 .......... .......... .......... .......... .......... .......... 2728 CTTCTCTCTA GTTCTCCTTT TCATTTACTG CAGATAAATA TTTCTAAACA ACGAATTCTC 68579 .......... .......... .......... .......... .......... .......... 2728 ATAAGCAGAA TGTTTTACAG TTGACAGGTT ACCTCCTCGT GTCCTCTTCT TCAGTAACTA 68639 .......... .......... .......... .......... .......... .......... 2728 TACCAGTCAT TCAAGAGATG GATATCCAAG CCTCTCTCTG GAAGGCAGCT ATTCTTGCTG 68699 .......... .......... .......... .......... .......... .......... 2728 TTTGCATGTC ATTTGCTGCT TTCATGGTCC TTGCAGTGTC TGCACTTTTA TCAGGCTACA 68759 .......... .......... .......... .......... .......... .......... 2728 AGCTGTGCAA AAGGATCATA TGGTGATGGA CTGGGAATTG AACGTGCAGC CTTCAACTCC 68819 .......... .......... .......... .......... .......... .......... 2728 AGGATTGACA AAGCAATCGT AGTGTAAAAT GGGACATGAT TTCTTCGATC TGCTTGAAGC 68879 .......... .......... .......... .......... .......... .......... 2728 ATCACAAGAA GCAATTGGGT GGCAGATACC AAATATCCTC TACTACACTA ATGGTCTGGT 68939 .......... .......... .......... .......... .......... .......... 2728 AGAAGTTGAT AACAGTAAGA AGAGGGTTTC AGAAGTTTAT AGCAAAGAAT AGAAATATTT 68999 .......... .......... .......... .......... .......... .......... 2728 TTGGAGGAAA ATATCCATAT ACACTATGAA TTGTTGTCCC ACCGCCATGG TGAATGAACA 69059 .......... .......... .......... .......... .......... .......... 2728 GTATTAAGTA GTAACAAACT AGTTTGAACT TCCTTGCTTC GAAGTATAAC AAAAACTTAC 69119 .......... .......... .......... .......... .......... .......... 2728 AGTTCTTTTT CTACAGATAA TGTTTTACTG CTTCACTTAG GCCAAGAAGA TAATAACAGT 69179 .......... .......... .......... .......... .......... .......... 2728 GTAATGTATA AAATTATAAA TACTATCAAA CACTGGCAGC TCCATATAAC CAAAATACTA 69239 .......... .......... .......... .......... .......... .......... 2728 AACCTTCCTT GATGAACAAA GAAGTAATTT CAGTTTAAAA CCTACAGTTA TCTCATATTC 69299 .......... .......... .......... .......... .......... .......... 2728 AACATTAGGA ACATCAATTC ACATAGTACT TACGATATCT ATTTATTTAT ACCCAGCAAA 69359 .......... .......... .......... .......... .......... .......... 2728 TCTTGAAAAT CATTCGTCTC AGATGGCTTA CATATATTCG TTCACCATAC CATCAGATAT 69419 .......... .......... .......... .......... .......... .......... 2728 TCAGATCAAA TGTAGACTGC TCGGCACATT CTAAAGTCGG CACATTCTTT AGAAGGCAAA 69479 .......... .......... .......... .......... .......... .......... 2728 ATCTCATCTG AATTGGCATG TTTAATGGCA AGCAACAACA TTTCAGCTCT CACCACTAGT 69539 .......... .......... .......... .......... .......... .......... 2728 AAACAAATTT CAGTTGTCTT TAGTGATTTG TCTAGTTAAA ACTTGACAGA AGCAAGTGCT 69599 .......... .......... .......... .......... .......... .......... 2728 ATGCAGTTTA ATCTTCTATA ATGACAAGAT TTCCCTCAGA AAATTCACAT GCCTCGATAG 69659 .......... .......... .......... .......... .......... .......... 2728 AGAGGGAAAG TTGCTTCTGT AGCTTTTTTA CCACAAAGAC TTCTGACTCT TCACATATGG 69719 .......... .......... .......... .......... .......... .......... 2728 TTACTACCGT GCCCTTGCGA CCAAGCCTGC CCGTACGACC AGCTCGATGA GCATAATGAA 69779 .......... .......... .......... .......... .......... .......... 2728 CCGAGTCAGT AGGTAACCCC AGATTAACTA CAAGATCACA TTCAGGTAAA TCCAAGCCTC 69839 .......... .......... .......... .......... .......... .......... 2728 TAGCTGAAAG CTCATTCGTT AGCAGCACTC TAATCTCCCC ATTTCTGAAC TTCTTTAAGA 69899 .......... .......... .......... .......... .......... .......... 2728 TTGTTGATCT CACAAGTTTG CTAAGATCAC CATGTAATTC TGCAGCATTC ATACCACGAG 69959 .......... .......... .......... .......... .......... .......... 2728 CTTCTAGTTT GAAGACAGCA TCTTTTAGCT GTTTTGTGTG GTTCATAAAA GCTATTACAC 70019 .......... .......... .......... .......... .......... .......... 2728 ATTTGGCATC CAGAGCGTGC ACACACCTTC TTAACATATC AACTTTGTGC TGTATCCTAG 70079 .......... .......... .......... .......... .......... .......... 2728 TAATAGTGTA ATAATGCTGC AAATTAGGGG GTAAGCTCTG AACATCAGGC ATAGGTTGTA 70139 .......... .......... .......... .......... .......... .......... 2728 CACTTGAGCT TGAATCAGTA GTAGAAGGTG TTCCCGGTAT ATTAACAGAT CCAGAAGGAG 70199 .......... .......... .......... .......... .......... .......... 2728 TGACAGACTC GAGTGGAACA ACTTTATTGG CTTGGATGAG AAGTGGATCA CAACCCCAAC 70259 .......... .......... .......... .......... .......... .......... 2728 TTCTTGCTGC TCTTATAACT GAAAAAGGCA CTGTTGCAGA CACCATAATA GTCTGACGTG 70319 .......... .......... .......... .......... .......... .......... 2728 CAGCTCGCTT GACAAGTGGA CTATTTGACT CTCCTCCACG TGCACCAGGT CTTCTCCCCA 70379 .......... .......... .......... .......... .......... .......... 2728 CATGGTCTAA TATACGCTTC ATGTCCTCCC TGAAAGTGAA TGCAAGGAGT TGATCAATTT 70439 .......... .......... .......... .......... .......... .......... 2728 CATCCAATAC CAAGTAACGA CAACCATGGG TAGGAAGCTT TCCAGCTGCA CTAATCTCTG 70499 .......... .......... .......... .......... .......... .......... 2728 CTATCCGCCC TGGTGTCCCC ACTACAATGT CGGGCTTGTT CTTCTTCAGA GCATCCTCCT 70559 | ||||| | .......... .......... .......... .......... .........A GCATCTT... 2736 GTCTAGATCG GTTTGCACCC CCTACAAGCT GCTGGACTAG TTTCTTATTC GCTGGTCCTA 70619 .......... .......... .......... .......... .......... .......... 2736 ACAGCTTTTC AACTTCCCTG ACAATCTGCA TGCCAAGTTC CCTCGAAGGA GCTACTATAA 70679 .......... .......... .......... .......... .......... .......... 2736 CTGCTTCGAT GTCTATTTTG TTCCCAGTTT CATAGCCATC TGGAAGTTCT TCCTTCAACG 70739 .......... .......... .......... .......... .......... .......... 2736 GACCAACTCG AGACAGTATG GGAAGGAGAT AAGCTAATGT TTTTCCTGAA CCTGTGTAGG 70799 .......... .......... .......... .......... .......... .......... 2736 ACTGAATCAC AACATCATGA TTTTTAAGAA CAGTTGGAAC TGCAGCAGCT TGAACATCAG 70859 .......... .......... .......... .......... .......... .......... 2736 TCGGAATCGT AAAGCCTTCC GTCTCTAGTC TTTCGACCAA CAAAGGTGGA AGGCCAAGTT 70919 .......... .......... .......... .......... .......... .......... 2736 CTGAAAATGA CTTCGCAGCA AATGGTGCAG TCATTATATC TACTGGGTTT TTCTCCTTAA 70979 .......... .......... .......... .......... .......... .......... 2736 CCAATCCTTG TTTATTGCCA CTAACTCTTT TCTTCTCTCT GCTCTTTGGG ACCTCAATAG 71039 .......... .......... .......... .......... .......... .......... 2736 TTGAAATTCC CTGCTGGAGC TTATTTTTCT CATTTGCACT TACTGTCTTA ACTTCACTCT 71099 .......... .......... .......... .......... .......... .......... 2736 TCAATCCAAG GCTAGCTAGA GTGAGGGATC CACTGCTACT TAAAAAGCGA ACATTGCCTT 71159 .......... .......... .......... .......... .......... .......... 2736 GAGATGGAGC TATCCGTGTA AACTGTGTAG CTTTTCTGAA AGCTAAAGAA TCCCCAATTA 71219 .......... .......... .......... .......... .......... .......... 2736 ACAAGAGGGC CCTTGTTAGC ACTAAAGCAG GCATGGTTTT TCTAGTACTT GTTTTCCCAG 71279 .......... .......... .......... .......... .......... .......... 2736 TTGCTATCTC ATGGAACAAC TCAAACTTGA TATGACTATT TATAATGCCA AAATCCTCTT 71339 .......... .......... .......... .......... .......... .......... 2736 AAGCAATTTA CTATCATCAC CAATCAGACT GCAACAAAAA TGTTAAAATA TCAAATATAC 71399 .......... .......... .......... .......... .......... .......... 2736 ATAACAATAT AGGACCTATG ATAAGTAAAA TTAAGATTTA GCATATCAGC ATTCTTTTTA 71459 .......... .......... .......... .......... .......... .......... 2736 CTAAAAATTG AGAATGTAGT GACAAAAGTA TGCCTCTTTT GCTGTAATAT CCCTCTTCAA 71519 .......... .......... .......... .......... .......... .......... 2736 GAAAAAGAAA ATAATCAGCA AAGAGCATTA GTGCAAAAGG CAAGTCAAAC AACTCAATGA 71579 .......... .......... .......... .......... .......... .......... 2736 ATCAATCGAT CAATCAAAAC TAGTTAGTGT CTGTACTCTG TTATATGAAT TCTCTATATC 71639 .......... .......... .......... .......... .......... .......... 2736 CATCCCGCTC CCTTCAGCCA TAAATCCTAT TTTCCTTTTC TCCACTAAGC TTGAACCTCA 71699 .......... .......... .......... .......... .......... .......... 2736 CCTTAGGTGC CAAGTGATAT CCTCTACTCC CTAACTAAAC ATAGTTCAAC TATATCATTC 71759 .......... .......... .......... .......... .......... .......... 2736 AAACACCACA TAACTGTCCA CTCTTGAAGA TCAATAGCAG GGATGACTGA ATGACGTTTA 71819 .......... .......... .......... .......... .......... .......... 2736 CTGCAGTAAA TCATATCCCA CATAACCTCT TATATAGACA TTTTTTTAAC ACCCAGAAAC 71879 .......... .......... .......... .......... .......... .......... 2736 TAGAAGACAC TAAACATTTC ATCAAACACA TGGTGACCAT TTCATCAAAA ACATATCAAA 71939 .......... .......... .......... .......... .......... .......... 2736 CCCTCAACTC TCATTTCTAC ACACCTACGC ATTTTCACTA TCACATTCAA TGCATAATCT 71999 .......... .......... .......... .......... .......... .......... 2736 ATAAAGTTTT CAACTTTCTA GAGAGTTCGA ACTCATCAAA AAATAAAAAT GGAAACAAAC 72059 | | | | | || || || ||| ||||| ||| | | .......... .......... .ATAATAC-- ATTC-TCTAA AAA-AAAAAA AAAAAAACTC 2771 AAGAAGCAAA ATTTGAAGGA AAACTAAACA TATAAGAGAA CATGAAACTA ACAAAAACAA 72119 ||| GAGAT..... .......... .......... .......... .......... .......... 2776 ATAAACACGA AAGCTTAGCC TCCATTGAAT TGGGTAAGAG AATAAAGAGG AAATTGAAGG 72179 .......... .......... .......... .......... .......... .......... 2776 TGTATTTTTA CCTCCTTCAT CTTCTTCTTC ACAACTTAGC TGCCCTTCCT GTTACTCTGC 72239 .......... .......... .......... .......... .......... .......... 2776 TAATAGTGAA AGCTAACCAT ATCCTTATTC TTTATCATTG TTGATGATAA CCTCAAGGCC 72299 .......... .......... .......... .......... .......... .......... 2776 CAATTATAAA ATATCAATCA AATTCATTTG GGCTTTACAT ATAAAAGTCC ACAATTTTTG 72359 .......... .......... .......... .......... .......... .......... 2776 GACCACTATT TAAGGAGTAG CCAAAATTAA GTTCAACCAA TTTATTTTTT TCTTACACAT 72419 .......... .......... .......... .......... .......... .......... 2776 TAGCTAACAT CCGGATACAT AGGTGAGGTA TGTACCGAGG CAGTGGCAGA CTCAGATTTT 72479 .......... .......... .......... .......... .......... .......... 2776 TCATCCAGGA AATAAGAAAC ATAAAAATGT AAACGTGTAT ATACGCCAAC AGAACAAAAT 72539 .......... .......... .......... .......... .......... .......... 2776 TTCAAACAAG TAGTAGTTAT TAATTTTAGT GACGGACCCT TGAATTTTTT TGGGTTTAAA 72599 .......... .......... .......... .......... .......... .......... 2776 ATCACGTTTT TGGCATGTTT CATAAAATTT TAAAAAAAAA AACTAAAAAA GGTGAAAAAT 72659 .......... .......... .......... .......... .......... .......... 2776 GGAATTGAAA CTGAAAAATA AATAAATGAA ACACTTGACG CAGGGATTCA AACCCTTGAT 72719 .......... .......... .......... .......... .......... .......... 2776 GTGAAGGATA ATTTCCAAGG GACCTGTCGT CGGGCTATCC GTTTCATTTT GTCACTTATG 72779 .......... .......... .......... .......... .......... .......... 2776 AGGTTCAAAA TTGTATATAT TCATATAAAT ATAGAGGATT ATCCTACATA TACAGTGTAA 72839 .......... .......... .......... .......... .......... .......... 2776 TTTTTTAACG AGGAGGTTCG GGTGAATCCC CTGGAACCCA CGTGGATCCG CCCCCTGCCA 72899 .......... .......... .......... .......... .......... .......... 2776 AGAGGGAATA GGACATTCAG ATACATCAGT AGACATCCTG ATATATAGGT GAGGGATATA 72959 .......... .......... .......... .......... .......... .......... 2776 ACAGAGAGGG GATAAAGATG TATCAGCGAG AGGAGATTGA TGTTCCGAGA GGGGATTTTT 73019 .......... .......... .......... .......... .......... .......... 2776 AAAATTTTCT TAGATGATAG AAAATTTTAG AGATTATGAT AAAATAAAAT ATTTATTGAA 73079 .......... .......... .......... .......... .......... .......... 2776 GTAATGTTTC CATTTTTTTT TTATAGGTTA ATCACTTTAA AATCAATGAT ATCGTTTGAA 73139 .......... .......... .......... .......... .......... .......... 2776 TTTTTTATCC AAATATTCGA GTTCAAAAAT TTAAATATTT TAAACAATGA ATTATTTTAA 73199 .......... .......... .......... .......... .......... .......... 2776 ATCTTCAACC ACACCCTATA AGTGTGACAT AAATGATAAA CATAATGTGA CATTTGATTA 73259 .......... .......... .......... .......... .......... .......... 2776 AAGGTCACAT TTTTCATTCT AAGCAACGTT TTCTAGAAGT AACATAAACA TGGCATTTTG 73319 .......... .......... .......... .......... .......... .......... 2776 TATGATCAAA GGCCAAGCTA GTAGAATCCC TCTATGACTA CGTTTTTCAA ACTTTATAAC 73379 .......... .......... .......... .......... .......... .......... 2776 TATACTTCTA AAGGAGCATT TGCAAAGTGT AGTCTTAAAT TAATTAATTA ATAGGACACC 73439 .......... .......... .......... .......... .......... .......... 2776 ATTTAGCTAG AACCCTATGA TCACAATATA GTGTAAAATT GTTATAATTT TTTTTATATT 73499 .......... .......... .......... .......... .......... .......... 2776 AAAATTGTTT TTTATTTATA TTTTGAATCA TAAATATCTT TAAAATGTTA AATCTATCAC 73559 .......... .......... .......... .......... .......... .......... 2776 TAAAGTTGAC ATAATAATCC ACCTATGCAG TTCAACATGT TTTAATGATG TGTTGTTCTT 73619 .......... .......... .......... .......... .......... .......... 2776 CCTTGTAGAG AGTTCTATCA CACACACAAA AAGATTAGAA AATATTAAAA ATAGTTTATC 73679 .......... .......... .......... .......... .......... .......... 2776 TGTTGTTTTT GTTTGAATTA TTATTTGAAC TTTGAAACTC CAATTTTAAA GTGTGCCAAA 73739 .......... .......... .......... .......... .......... .......... 2776 GTTATTGAAA GATCGAGTTC ATAAAATGAT TACAAAAGCT TATAAGATTT ATTAATTCAA 73799 .......... .......... .......... .......... .......... .......... 2776 TTTTTAACTA TTTTATGGTA TTTCTTTTTA AGAAAAAAAA AGTGAAAATT AGGTAAGTAA 73859 .......... .......... .......... .......... .......... .......... 2776 TAAAATGAAC AACGTTAATT TTCTTAAAAA GACTGTTAGC CGAATAGAGT TTAGTACATA 73919 .......... .......... .......... .......... .......... .......... 2776 AGAGATTATC CTAAACCTAC GACATGCTAA AAGTTAAAAT CAATAAAAAC TAAATTTCAT 73979 .......... .......... .......... .......... .......... .......... 2776 AATAAATACT CCAGTACAAT AAAAAAGAGC TTGAACTTCA TTAAAAAAAT TATCAAAACT 74039 .......... .......... .......... .......... .......... .......... 2776 ACGCTACTTA AGTTGGAATT TTCTATTATA TTAGATATTA TTAGGTTAAT ATTAGTTAGT 74099 .......... .......... .......... .......... .......... .......... 2776 GATTTTCAAT TTTAAATCTG GCTCATAATA ATCATTTATC AGAAACATGA TTTTAATTAT 74159 .......... .......... .......... .......... .......... .......... 2776 CAAATGATTA AATAATCGAG AGAATTCTCT TTTCTTTCTA ATTAACAATG ACAATGCAAA 74219 .......... .......... .......... .......... .......... .......... 2776 TATTTGAGGA CTATTTATTT AAAACTGGCG TGGACAGAAT CATTTATTTT TTAAGCTAGA 74279 .......... .......... .......... .......... .......... .......... 2776 AAAAACATAG ATTACCCCAT CACATGACAT TTTGATTTTC TAATATAGTG GTGGTTGGTA 74339 .......... .......... .......... .......... .......... .......... 2776 TTGAAATATA TATTTATGAG AAAGTTATTT TGTCATATTA ATTATTAAAA TATTTTTTTA 74399 .......... .......... .......... .......... .......... .......... 2776 CTAATTAATT GGACAAATAT GACATATCTT TTATGATTGG AAATCATTCA GTATGCTAAT 74459 .......... .......... .......... .......... .......... .......... 2776 ATTATCATAA AAATTTGACG TATGATATTT TTCTTTTTAG AAAATGTTAT CCACCCAATA 74519 .......... .......... .......... .......... .......... .......... 2776 CCATTAAATA GTTTTATAAT ATTTTTGATG GAGAACATTA TTCATGGAGA AACGACTCGC 74579 .......... .......... .......... .......... .......... .......... 2776 TCAGAGTCGG TTTGATTACA TATGAAATTT GTTTTTTTAT AAAATAATTT TTAATTAAAT 74639 .......... .......... .......... .......... .......... .......... 2776 AGTTATCGTA TATTAACAGT CCTTTTTTAC TTTAATTTTT TTTAACCTCC TCATTTCACC 74699 .......... .......... .......... .......... .......... .......... 2776 ATCAATCCCT TTTATGTTCA ATAACGTTAC TCCTTGAGAT CTTTAATTAA TAGTGTATTA 74759 .......... .......... .......... .......... .......... .......... 2776 ATTCTAATAT ATCTGTAGTT ATTTTTATAT GTAACTTACT CTCCTAACTA TATAGCGATT 74819 .......... .......... .......... .......... .......... .......... 2776 AATATTTTTC ACTAAATTGA AACCGCCGTT GACCACATCA TGACCTCTTA TAGTTCTTAC 74879 .......... .......... .......... .......... .......... .......... 2776 ACTATATTCA ACTTTTTTTA TATTTTTCGT ACATACTTAA TAATTTATTA ACTTCACAAA 74939 .......... .......... .......... .......... .......... .......... 2776 ATTAACTATT TATTAAATGT AATAGATCAG CAACGTTATC TCCAACGTAA GAATAAATTC 74999 .......... .......... .......... .......... .......... .......... 2776 CATAACTTCT ATGACACGTG TTCTTTCTAC GAATACATTT TATAAGTGCC AACAAAAAGA 75059 .......... .......... .......... .......... .......... .......... 2776 CGCACACTAT TAATGCTGTT CGAAACTGGA GAACCTTCTA GAAATAAAAA AACAACTTTT 75119 .......... .......... .......... .......... .......... .......... 2776 TAGTTTTTCT TTTTTTTTAG TAAGTACCTT CTCGCAACTT CTTAACGAAA AAAATTAGTT 75179 .......... .......... .......... .......... .......... .......... 2776 ACTGGGCCCC TAGAAAAAAT TTGACCCGAC CCATTTTTCA TTTTACTCTT TATAATTAAT 75239 .......... .......... .......... .......... .......... .......... 2776 AATATTTTTA TTTTTTTCCA TCTTTATTTT TTCCTTTATT AGCCATTTGC TCCTTCTCTC 75299 .......... .......... .......... .......... .......... .......... 2776 CTCCTATCCT ACTCACCTCC TAAGAAACTT CTAGAACAAA AACGCAAATT TCTCATTTTT 75359 .......... .......... .......... .......... .......... .......... 2776 CTCGTCTTCT CGATCTGTTT AGAGGGGGTT TGGATCTGAA TTGACGGCAA CGGTGGATGC 75419 .......... .......... .......... .......... .......... .......... 2776 TATGGTGCCA TCGTCGGTTG ATTGTACCGG CGAATCTGCC ACCGGGGAGA ATCAGAGATC 75479 .......... .......... .......... .......... .......... .......... 2776 TCTTCCGACG CCATTTTTGA CGAAAACTTA TCAGCTTGTC GATGATCCTG CTATGGATGA 75539 .......... .......... .......... .......... .......... .......... 2776 GTTGATCTCG TGGAATGAAG ATGGAACGAC ATTTATTGTT TGGAAACCTG CGGAGTTTGC 75599 .......... .......... .......... .......... .......... .......... 2776 TAGGGATTTG CTTCCCAAAT GTTTTAAGCA TAATAATTTT TCCAGTTTTG TTCGGCAGCT 75659 .......... .......... .......... .......... .......... .......... 2776 TAATACTTAC GTAAGATTAG GTTTAATTTT TTTTTAAAAA AATTATATAA TTTTTGATTG 75719 .......... .......... .......... .......... .......... .......... 2776 ATTTAACTGA TTTTGTTGAA TTTTTGTTTA GGGATTTAGA AAAGTTGTAC CTGATCGATG 75779 |||| || || .......... .......... .......... .AGATTGTGA AA........ .......... 2787 GGAATTCGCA AATGACTGTT TCCGTAGAGG TGAGAAAGGA CTACTTCGTG ACATTCAACG 75839 .......... .......... .......... .......... .......... .......... 2787 CCGGAAAATT TCACCGGCAG GTGCTGCGGT TGTTGCACCA GCAGTAGTAA CGGTGAATGC 75899 .......... .......... .......... .......... .......... .......... 2787 TGCACAAGCG GTGACGGTAG CGGTAGCACC AGCGGTCAGG GTGGTTTCTT CATCGAATTC 75959 .......... .......... .......... .......... .......... .......... 2787 CGGTGATGAG CAGGCGTTCT CATCGAACTC ATCTGGTGCC GCAGCTGGAG CGGCGATGTT 76019 .......... .......... .......... .......... .......... .......... 2787 AAGGACCACT ACGTGTACGA CGACGCCGGA GCTTATAGAG GAGAACGAAC GGTTGAGAAA 76079 .......... .......... .......... .......... .......... .......... 2787 GGAGAACGCA CAACTAAATC AGGAATTGAA TCGGTTGAGA AGTTTATGCA GTAACGTATA 76139 .......... .......... .......... .......... .......... .......... 2787 CAATCTGATG TCCAATTACA CGGCGAATCC GGCGGATATA CCGGCAGGTA TACTAGGAGG 76199 .......... .......... .......... .......... .......... .......... 2787 ACGAGCTTTG GAATTGCTTC GTACGGGGCA AGTTGACGGC GGCGGTGCGG CCATCACAGC 76259 .......... .......... .......... .......... .......... .......... 2787 GGCGGAGAGC AGCGGCTTCA AGGCGGATGA AGATATGAGC CCACGGTTGT TTGGTGTATC 76319 .......... .......... .......... .......... .......... .......... 2787 AATTGGGGTA AAGCGCGTGA GGAGAAGCAG CGAAGAAGAA TCTGAGGATC AGGATCAAGT 76379 .......... .......... .......... .......... .......... .......... 2787 ACAACCGCAT GGATCAGACA TGAAATCAGA GCCGTTAGAT TCAGGAAGTG CTCAACATGA 76439 .......... .......... .......... .......... .......... .......... 2787 TGATCAGCCA TGGATTGATC GATTAGATTT AGGGTGTTGA TTTCCCTTGG AGGGTGGGGT 76499 .......... .......... .......... .......... .......... .......... 2787 CCACAGAAGC ACTTCGGCAT TGATGACCAA CACGTGTACA ATGGAAGATT GTTGGTTGTT 76559 .......... .......... .......... .......... .......... .......... 2787 TCTGGTGGTT TCTAGAAGAA GTGAGAAATC AAGTCAAATG GTTTTTTGAG AAGGCCCCAA 76619 .......... .......... .......... .......... .......... .......... 2787 AAGAGGTGGA AAAGGAGAAA AACGAAGTGG CTTTTTTAAT ATGTTTTCAT AATTGGATTG 76679 || || || |||||| ||| | ||| ||| ||| | || | .....GTAGA CAAAGAGAAA AACAACCTGG GGGGGGGGCC CGGTTCCCAT TACCCCATAG 2842 GAAAAAATAG AGGGGGCTGA GCTGGTTGGT -TGAAAAAGA TGACAAATGT TGGAAATGAT 76738 |||| || | ||| | |||||||||| || | |||||||||| |||||||||| AAAAAGCTAC ATAAAGCTAA GCTGGTTGGT ATGTTTTGTA TGACAAATGT TGGAAATGAT 2902 AGTCAAATGT ATTAATTAGT TGGGATTAGG GAAATATTTA TGTTACAATT TAAGGTGCCA 76798 |||||||||| |||| || | ||||||||| |||||||||| |||||||||| ||| |||||| AGTCAAATGT ATTAGTTGGG GGGGATTAGG GAAATATTTA TGTTACAATT TAACGTGCCA 2962 ACTAATTTTT GGCTAAGGAA ATTATTTGTG CATAATTGAA ACATTAATAA TGTTGTAACT 76858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAATTTTT GGCTAAGGAA ATTATTTGTG CATAATTGAA ACATTAATAA TGTTGTAACT 3022 TTATGTTTAG AAAAAAATAC CTGGGTAAAT TTACTGAA 76896 |||||||||| |||||||||| |||||||||| |||||||| TTATGTTTAG AAAAAAATAC CTGGGTAAAT TTACTGAA 3060 hqPGS_C08HBa0235H18.1+_SGN-U316082+ (76625 76896) ******************************************************************************** EST sequence 15 -strand 906 n (File: SGN-U334276-) 1 GATCTCGGTC TATCTTTGAT TTATAAGGGA TTTTGCNGAT TTCGCCCTAT GGTTAAAAAA 61 TGAGCTGATT TACAAAAAAT TAAACGCGAA TTTTAACAAA ATATTAACGC TTACAATTTG 121 CCATTCGCCA TTCAGGCTGC GCAACTGTTG GGAAGGGCGA TCGGTGCGGG CCTCTTCGCT 181 ATTACGCCAG CTGGCGAAAG GGGGATGTGC TGCAAGGCGA TTAAGTTGGG TAACGCCAGG 241 GTTTTCCCAG TCACGACGTT GTAAAACGAC GGCCAGTGAA TTGTAATACG ACTCACTATA 301 GGGCGAATTG GGTACCGGGC CCCCCCTCGA GTTTTTTTTT TTTTTTTTTA GCTTATAAGC 361 TGTTTTAAGT TGATCACATC TTTATCTTTT TGCCCTTAAT ATTTTTATAC AATTTCCAAG 421 TTACACATAT AACCCTAACA TCTCTTTCTT CCATTTTTCG CTTTTCACGT TTGGCATAAC 481 AACTTCAGCA CTTTTATCCA AATGCATAAC TGTTTATTTT AGAAATAAGT TTCAGCACTT 541 TCAAAAGTAC TTTTTTAAAG CTGTTTTTAT TAAGCCCATC CAAACGGGCC CTAAATAAGA 601 AAATATTCTG ACAAAAATTC TCATAAATTA ATTTAGACTA TATATTATTT TTAATTTCTT 661 ACCCAGTAAA CTAATAAATG AGTAGGTCAA TAACTTTAAT TTCCCAAACT TAGGTGGATT 721 AGACATGTTA GGTTGATAAA CTAACTCTGT CACCTTTATC TATATTTATG TCTTTAATAA 781 TATATGAGAT TTGACTTCGT TATATATATC GAACATCGAA TCGAAAAAAA CTGGTTTAAG 841 CTGAGCCTGC AGCCCGGGGG ATCCACTAGT TCTAGAGCGG CCGCCACCGC GGTGAGCTCC 901 AGCTTT Predicted gene structure (within gDNA segment 85982 to 77936): Exon 1 81972 81721 ( 252 n); cDNA 341 592 ( 252 n); score: 0.929 Intron 1 81720 79854 (1867 n); Pd: 0.000 (s: 0.92), Pa: 0.106 (s: 0) Exon 2 79853 79826 ( 28 n); cDNA 593 621 ( 29 n); score: 0.661 Intron 2 79825 79761 ( 65 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 79760 79712 ( 49 n); cDNA 622 670 ( 49 n); score: 0.612 MATCH C08HBa0235H18.1- SGN-U334276- 0.929 329 0.363 C PGS_C08HBa0235H18.1-_SGN-U334276- (81972 81721,79853 79826,79760 79712) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCTCTTAAT 81913 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| ||| |||||| TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGATCACATC TTTATCTTTT TGCCCTTAAT 400 ATTTTTATAC AATCTCCAAA TTATCCATAT AACCCTAACA TTTCTTTCTT CCATTTTTCT 81853 |||||||||| ||| ||||| ||| ||||| |||||||||| | |||||||| ||||||||| ATTTTTATAC AATTTCCAAG TTACACATAT AACCCTAACA TCTCTTTCTT CCATTTTTCG 460 CTTTTCACGT TTGACATAAC AACTTCAGCA CTTTTATCCA AACGCATAAC TGCTTATTTT 81793 |||||||||| ||| |||||| |||||||||| |||||||||| || ||||||| || ||||||| CTTTTCACGT TTGGCATAAC AACTTCAGCA CTTTTATCCA AATGCATAAC TGTTTATTTT 520 AAAAATAAGT TTCAGCACTT TTAAAAGTAC TTTTTTAAAG CTACTTTTAT TAAGCCCATC 81733 | |||||||| |||||||||| | |||||||| |||||||||| || |||||| |||||||||| AGAAATAAGT TTCAGCACTT TCAAAAGTAC TTTTTTAAAG CTGTTTTTAT TAAGCCCATC 580 CAAACGGCCC TTACTCTAAT TATTATAGAA AATGAATTTA ATATAAGATG TATCCTTAAA 81673 ||||||| || | CAAACGGGCC CT........ .......... .......... .......... .......... 592 AGAAATGAAA CTAAAAAGTT GATTTTTTTT TAGTTTCAAT TAATGTTTTA AAAGGCATAA 81613 .......... .......... .......... .......... .......... .......... 592 TTAAGAGAAT TAATTATAAA CAAATTAAAG TGTAACTAAA ACCCCCTAAA AAAGGAACTA 81553 .......... .......... .......... .......... .......... .......... 592 TTTAATGATC AAATGAGAAC AACAACATTA ATTATCACAA ACTAATCATC GACAAATTAA 81493 .......... .......... .......... .......... .......... .......... 592 AATTCACCAT TTTCTCCAAA GAAATAAACT TTTAAAGTCA AGAAACATAT CATTCCACAA 81433 .......... .......... .......... .......... .......... .......... 592 ATTCTTTTTA GATAATTTAT ATATAGTGAG AATATTCTTT ACTGTCAACA TATATAACAC 81373 .......... .......... .......... .......... .......... .......... 592 AAATAATACA ATATCGTTCA TTTGTCTTAC AACATATTTG TTGATGATGC CATCATCGGA 81313 .......... .......... .......... .......... .......... .......... 592 ATTCCAAAAA TCGGCGAGTA CTTACTCACC TTCTGTAAAT ATGTCATTAA CGATGATCAA 81253 .......... .......... .......... .......... .......... .......... 592 TTAAAATTCA CGATTTTCTC CAAACAAATA AGCTTTTAAA GTCTAACAAA CATAGCATTC 81193 .......... .......... .......... .......... .......... .......... 592 CACAAACTTT TTTTAGATAA TTTATATATA ATGACAATGT CCTTTACTGT CAACGTATGT 81133 .......... .......... .......... .......... .......... .......... 592 AACTTAAATA ATATGATATC GTTCATTTGT CTTACAACAT ATTTGTCGAT GATGCCATCA 81073 .......... .......... .......... .......... .......... .......... 592 GCGGAATTCC AAGAACCGGC GAGTACTCAC TCACCTTCGG TAAATACGTC ACTAACGGTG 81013 .......... .......... .......... .......... .......... .......... 592 ATCGTTGAGG ATGCATTCCC AAAACAAACG AAGTACCCAA TTTAACGGCA ACATTGACAA 80953 .......... .......... .......... .......... .......... .......... 592 CTCCGTTACC TCTTGAACCA TCTTTATTCC GTAGCCTATA GCTAAATTGC CGGAGAAAAC 80893 .......... .......... .......... .......... .......... .......... 592 CCGCCGGAAG TAACCCGTTG AATACGTCGG CCGCCGAAAT CATACACCAC CCTAGTTCAC 80833 .......... .......... .......... .......... .......... .......... 592 TCCGACCCTT AAGAAAATTT TTAGAATATA TTCGAATGTA TATACATAAA TGTCCATGTA 80773 .......... .......... .......... .......... .......... .......... 592 AAAATAGACT AGCATCGATA GATAGATGAA ATTTATCGCC CCACATAGCA TTATAATTAT 80713 .......... .......... .......... .......... .......... .......... 592 TATCGATGTT GTTGTTACGT ATTGTTTCAT CAACACTAGT TATATGAAGT TCATTCGTGG 80653 .......... .......... .......... .......... .......... .......... 592 AGGTGGCGGA GACGGTGGAG AGGGTGGCGA AAGGGCGGAA CCGCCACGGC CAGGTGGTGG 80593 .......... .......... .......... .......... .......... .......... 592 TGTTCTTGAG ACCTTGAGCT GATATGATAG TAATTTCCAT CGACCAAAAA TTTTTTTTTT 80533 .......... .......... .......... .......... .......... .......... 592 TAAGAAAAGG AAATTAAAAG ATATATAATA TAGTTTGTAT GATGCAATTT GATGGCTATT 80473 .......... .......... .......... .......... .......... .......... 592 TTAATAATAC GAGGGACGAT GCACCCATGC AACTTCGCAT GTGGAAAAAG TTTAGGTGGA 80413 .......... .......... .......... .......... .......... .......... 592 CTTGAAATGT AAACGTTTAG TTACTCCTCA CGTTCGATAT TTATATTGAA ATTTGATTAA 80353 .......... .......... .......... .......... .......... .......... 592 ATTTAAATTG TACACTATAA AATCTATTTG AAAAATTATA ATTCTACCAA AAGTTTGAAT 80293 .......... .......... .......... .......... .......... .......... 592 ATGAGACTTC AGGTTAAATT TAATTATTTC ATTAGTCATA ATTATAATTA TATACGATCT 80233 .......... .......... .......... .......... .......... .......... 592 AAATAAAAAT GTTGAAATTA TTTTTAAATA TATTAAAGAT GATATTTTTT TAATTTAAAC 80173 .......... .......... .......... .......... .......... .......... 592 TGATTAAATA AAAAATATGT CATATCAATT GAGACCGAGC TAAAACGATA TGTTTGGATT 80113 .......... .......... .......... .......... .......... .......... 592 TAACGTAAAG AAGAAGGAAA AAACTTGAAT AGGATAAATG TGACCTACTA ATATATAGTG 80053 .......... .......... .......... .......... .......... .......... 592 GCCAACCATT TGAAAATTAA TTAACGAGGC CCACGCCGTT TTTTTTTTCT TCATCAATTC 79993 .......... .......... .......... .......... .......... .......... 592 TTTCTAGGAA GTAACGAGCT GATACACTTG CAATAACGAT GAGCAATGAG AAAATAATAT 79933 .......... .......... .......... .......... .......... .......... 592 TATTTTTTCA AAATGTTTTC CCCCAAAAAA TATTTGAATT TTGTCATATG GCCGAAACTT 79873 .......... .......... .......... .......... .......... .......... 592 TTGATTTTTT TTCTTTTAGA AACAAAAAAA ACTTTTGA-A AAAATTACAT TTTAAAGGAG 79814 | || || |||| || ||| | |||||| .......... .........A AATAAGAAAA TATTCTGACA AAAATTCT.. .......... 621 AAAATCAATT ATATCAAATT TAGTTTTTAC TAAATTTTTT TTTATTTTAA AAGATTAAAT 79754 ||||| .......... .......... .......... .......... .......... ...CATAAAT 628 TAGATTCGCA AAAAAATATT TTTTAATTCA GTAACCAACC AA 79712 || || | | | || | |||||||| || ||| || TAATTTAGAC TATATATTAT TTTTAATTTC TTACCCAGTA AA 670 hqPGS_C08HBa0235H18.1-_SGN-U334276- (81972 81721) ******************************************************************************** EST sequence 42 +strand 661 n (File: SGN-U313322+) 1 GGTTACCAGT TCAAGTCCCG TTTCCGGCAA CTTTTCCGGT TATTAAGCTG TTCCGCCGCT 61 GAGCACACTG ATTTAACTTC AGATTTACCC AATACAGAGG TGATTGAAAG CTATGGCTTC 121 CAAGGTATCC ATCATTTCAA AATGGACGGT TAAAGCTGAG GGAAAAAGTC AGCACCATAC 181 AGATAATTGT AAGATTATTG AGTTGACACC ATGGGACATT CTTGAGCTTC AAATTGACTA 241 CTTTCAAACT GGACTCCTCT TCCTCATGCC TGCATTTGAA CAAGTAAGAG ATCTACTAAA 301 AACAACCAAC ACCAGTTCCT TAATTGATCA TCTTAGAGTT TCACTATCTC GAGCTTTAGA 361 GCCTGTTTGG CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT 421 TTAAATGTTT GGCAATACTC AAAATAGCTT ATTTTAAGTT AAAAAAACTT ATTTTAAGCC 481 AAAAGTGTGC TTTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCATA TTTTTATGTT 541 TTTTCCCTTA ATATTTTTAT ACAATCTCCA AATTACCCAT ATAACACTAA CTTCTCTTTC 601 TTCTATTTTT CCCTTTTCAC GTTTGGCATA ACAACTTCAA CACTTTTATC CAAACGCATA 661 A Predicted gene structure (within gDNA segment 87474 to 80420): Exon 1 86801 86787 ( 15 n); cDNA 272 285 ( 14 n); score: 0.733 Intron 1 86786 83719 (3068 n); Pd: 0.471 (s: 0), Pa: 0.986 (s: 0) Exon 2 83718 83704 ( 15 n); cDNA 286 299 ( 14 n); score: 0.600 Intron 2 83703 83542 ( 162 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0) Exon 3 83541 83519 ( 23 n); cDNA 300 321 ( 22 n); score: 0.652 Intron 3 83518 82348 (1171 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 4 82347 82308 ( 40 n); cDNA 322 359 ( 38 n); score: 0.600 Intron 4 82307 82121 ( 187 n); Pd: 0.449 (s: 0.60), Pa: 0.574 (s: 0.98) Exon 5 82120 81804 ( 317 n); cDNA 360 661 ( 302 n); score: 0.896 MATCH C08HBa0235H18.1- SGN-U313322+ 0.896 410 0.620 C PGS_C08HBa0235H18.1-_SGN-U313322+ (86801 86787,83718 83704,83541 83519,82347 82308,82120 81804) Alignment (genomic DNA sequence = upper lines): GCCTTTGATC TAGTGGTAAG AGCGTAAAGC ATGATGTGCG TGTTAGTCAC AGTTCATATT 86742 || ||||| | ||| GCATTTGAAC AAGT-..... .......... .......... .......... .......... 285 TCGAACTTGG ACCCTGACAA AGCCGCGTTC ATTATCCAGA GTTTTGAACC ATGCGCTATA 86682 .......... .......... .......... .......... .......... .......... 285 TTGTCCCTTG GGAATTTCTT AGTTATAAAA GATATATGGC TGATCATTGA AATTTAATAT 86622 .......... .......... .......... .......... .......... .......... 285 TCTAGACAAT TTTTTTCTTG TAGGCTGGTT TAATTGTGTT TGACCTTTTG CTTTCATTTC 86562 .......... .......... .......... .......... .......... .......... 285 CTAATTATTT TAATTCCTTG ATTTCCAATA CTAAATAATT TTTCTTGTAT TTTCATAATA 86502 .......... .......... .......... .......... .......... .......... 285 GAAGTTTTCT GAATTTCACA CTTCCCCGAA ACCAAGGTAA ATTTTTTTAA CCAGATCTTA 86442 .......... .......... .......... .......... .......... .......... 285 AAGAGTCCTG ACCACACTGA ATTTATCCAT TGGTGATGTA ACTCAGCTAG TTGATATTTG 86382 .......... .......... .......... .......... .......... .......... 285 CCTATATGGA TCTTTTGCTT CTATTATGCT TGGATTTTAG ATATCTTTTG CAAGAGATAT 86322 .......... .......... .......... .......... .......... .......... 285 TCAGCGACTA TTTGAGAAAC AACAATTATG TTTCTTTCAC TTTCTAGGAC TTGTTCGTTG 86262 .......... .......... .......... .......... .......... .......... 285 CTGACGGAGA AGGGCTTCCC CGATCACTAG TTGAAGAAGA AGCGAGATTC GCTCATCAAA 86202 .......... .......... .......... .......... .......... .......... 285 TCCTCAGTTT ATTTTCCCTC CGGGTTTGTT AAGAATTAAT TAAAGCTTTT AGCCTGTTTC 86142 .......... .......... .......... .......... .......... .......... 285 TGTATGCATG CTGTGGGACC TATTTAATAT TTTGGTTTTC GTAGCAGGCT GAATCTGTGA 86082 .......... .......... .......... .......... .......... .......... 285 TCCAATTGTT GATGACTTCT AGTGAACACA GTTCAGGACT TGAAGCACAT AAATATGGCC 86022 .......... .......... .......... .......... .......... .......... 285 ACAGACATCT GGGAGATGCA CACACCTTGA TACGCGTTTT ATGTCACAAG AAGGAGAGAG 85962 .......... .......... .......... .......... .......... .......... 285 AAGCTTCAAA ATTCTTGAAG CGCTATTACC ACCTCCCACC ATCGTCAGGT GCCCTTTCGA 85902 .......... .......... .......... .......... .......... .......... 285 ATCCTTTTAG TTTGTTATGG TTTCCCAAAA GGCTGATATG ATAAAGTATA TATTTCACCT 85842 .......... .......... .......... .......... .......... .......... 285 CCTGAAATCC AATTTTTTTT TTTGGAGCGC AGTGTACAGT GGGGCTGCAG TGGAGGATTC 85782 .......... .......... .......... .......... .......... .......... 285 CTCTATGAAG TCGCCACTTA TGGCAGATCT CATTAAAAGG AGTGCTTCGT TTCGTTGGTC 85722 .......... .......... .......... .......... .......... .......... 285 TGACAAAAGC AGTAGCAGTT TCAGATCTTT AAAGAAGAAA ATCCAAGACG CAACATCAGA 85662 .......... .......... .......... .......... .......... .......... 285 TTTTAGGCAA GTGGGATGGT GATGATGGAC GCCTTCCTAA CAGCATATCG CCCATTAAAG 85602 .......... .......... .......... .......... .......... .......... 285 GTACTCGTTA AAAGTTGCAT ATATGCAAAT TGCATTTAAA TGAAGAATGA GAGGGTACTC 85542 .......... .......... .......... .......... .......... .......... 285 CATTCTGGGA GTATTATTCT CAGAAAATTT TGTCATGTTT GCTTCTAACT TTGAAGATGT 85482 .......... .......... .......... .......... .......... .......... 285 AGATCAATGT TGTAAACTCT GGGTCTCAAC TATAAAAGTA AAAGTAACAT TCCCAGATTA 85422 .......... .......... .......... .......... .......... .......... 285 TAGTATATCT ACATCTCATA CCTAGTTAGC AAATCAACAT TGTGACATAT CATGTATGCC 85362 .......... .......... .......... .......... .......... .......... 285 TGTCCTTACT TTGCATCCAC ATTATTGAAA TTTTATGTCA TTATATATGA GAAAATTCAA 85302 .......... .......... .......... .......... .......... .......... 285 ATAGAAGTCT CAACTTACCT ACCTTGTTAA TTAATGCACC ATAAAAGATG TGATTTAAGA 85242 .......... .......... .......... .......... .......... .......... 285 CACATGGAGC AACTTTATAC TAGCAATAAC AACATAACCT ATGCTTGCAA AAATAATTAT 85182 .......... .......... .......... .......... .......... .......... 285 AGTAATTGAG GCAGCACATT TCATTTTCAC AGTCTATTGC TACACATTCC TTACTAAGAG 85122 .......... .......... .......... .......... .......... .......... 285 CACTTAACTA TGGAAGCTAT GATAATATAT AAGAATTTTG CAGGTTTTTC AAGATGTAAA 85062 .......... .......... .......... .......... .......... .......... 285 TAACGTCTTT AAATTAAGTA AGAATATGAA TATTTTAATC ATATTGAAAT AAACTCGATC 85002 .......... .......... .......... .......... .......... .......... 285 TTATTTTCTT ATAATTATGA TGTCTGAGCT AGTTTGCCAC TGTCTCAGAA AGAGACCTGG 84942 .......... .......... .......... .......... .......... .......... 285 CGATCTTCTC GTGGACTTTT TTCGGATAAG TTTTAGGAAT CACATAGTTT TAATATGAAA 84882 .......... .......... .......... .......... .......... .......... 285 ATCATAATTT ATTCCTATTT AGTTTTGTAA CTACATTAAT CCCTTAAAAA GTAATACAAA 84822 .......... .......... .......... .......... .......... .......... 285 TTGGATACAT TAAAGGGTAT CTCGGATACA TTATAACATA AACTGAATAC ACACATATGC 84762 .......... .......... .......... .......... .......... .......... 285 AGTTTGGATA CACTAAAACT AGATCTGATA CATAATATGT AGCTCGGATA CATTATAAAA 84702 .......... .......... .......... .......... .......... .......... 285 TAAATGAATA TATATATATG TAGCTTGAAT ACATTAAATG TTGGTTCAAA TTCATTGATA 84642 .......... .......... .......... .......... .......... .......... 285 TGTAGTTCGG ATACATTAAA GACGTAAGGA ATTTTAGAGA TTTTAAAAAT AAAATAAAAA 84582 .......... .......... .......... .......... .......... .......... 285 ATTAAAAATA AGGGAAACAC CAGACGTGTA TTAATTTTTC CTTAATTTTT CTTCTTAGCA 84522 .......... .......... .......... .......... .......... .......... 285 ACTTCTAATA TTTGAGAAGT GAGCACTAGG AAGGTTCGTT AATATAAAGG CTCAATTTAT 84462 .......... .......... .......... .......... .......... .......... 285 TTCTTGGTCT CATTTTATTA ATTAATTATT AGTATGGTTG ACTATTAATT ATTTTATCAC 84402 .......... .......... .......... .......... .......... .......... 285 TATAACTAGT TTATGATTGA GACATGCAGC TAACTGATTA ATTGATTGCT TTTGGTAATA 84342 .......... .......... .......... .......... .......... .......... 285 ATCCTAAAAC TTTTCAAATT ATCGTAACCC TACAGAACCT CCTTAGCAGT TTCCATATTT 84282 .......... .......... .......... .......... .......... .......... 285 CTTCTACAAT ACATGTAGAT GATAAAAGTT TTTCTCGTCG AATTAGCTCA CTAGAAAAGT 84222 .......... .......... .......... .......... .......... .......... 285 ATTCTTACCG AAATATTAAA AAGCTTACTA ATTTTCCTGT GTAAAAACAC TAGTAATATT 84162 .......... .......... .......... .......... .......... .......... 285 ATTTTTTCTG TTTCTCACTA ATACAATTAA AATATAAATG AAGATAGTTA CTAAATAATT 84102 .......... .......... .......... .......... .......... .......... 285 ATCTTCATTT GATTAAATAA TTGATCAATA TAATTAAAAT GTGCATTTTT TTATTTTCTG 84042 .......... .......... .......... .......... .......... .......... 285 AGTTTTCCTG ATTTTTAAGT GGGATTTTGT GTTAGAGGAT AGAACCGTTT GGAATACGTA 83982 .......... .......... .......... .......... .......... .......... 285 AGAATTTAAA AGAACAAAAA AAAAAAGTTA GTCAAAAAGC ATTATAATTG AGAGGTATAA 83922 .......... .......... .......... .......... .......... .......... 285 TCCCACATAG GTTAATCAAT ATATCTTAAT TATCATAACT ATTATCATGT GTTAATTTAC 83862 .......... .......... .......... .......... .......... .......... 285 TCTTAATAAA ATCCCTTCAA AAAGTGTAAT TCAATTTTTG GATAGCAGAT AGTAGTTATT 83802 .......... .......... .......... .......... .......... .......... 285 TAATCAAAAT AATTGAAATT TGCACAAATT AACTCATTTC AGTGATAATT ATTTTTTAAA 83742 .......... .......... .......... .......... .......... .......... 285 AATAAAATTT GGTAACATAT TAGGAATGGA ACTTCTAGAT GAAATAGAAG GAAAAAGCAA 83682 || || || ||| .......... .......... ...-AAGAGA TCTACTAA.. .......... .......... 299 AAAGAGGAAA GAAATTACAC ATATACGAGT GACAATAACT AGGCAGGTCA TGATTGATAT 83622 .......... .......... .......... .......... .......... .......... 299 GTCTGGTGGG CATTTATATT TTTATTTTTT TATTTGTTTT AATTTGTTTG TTTTGATTTA 83562 .......... .......... .......... .......... .......... .......... 299 TAAATTTTAT TATATTTAAG TGACAACAAA CAGACAGGTC ATGATCGACA TGCATGCTTG 83502 ||||| || || ||| || | .......... .......... AAACAACCAA CA-CCAGTTC CTT....... .......... 321 CGCGATAGCT ACACTATTTA CCTTTTTCTA TGATTCTTCC GTTTTAATTT GTTTGTCTTG 83442 .......... .......... .......... .......... .......... .......... 321 ATTTTAATTT TTTTTTATAT ATATAAGTGA TAGTAACCAG GGAGGTCATG GTCGACCCTA 83382 .......... .......... .......... .......... .......... .......... 321 CCTGACAGCT GCATTATTTT TTCTTTTTCG GTGGTTCTTC CGTTTTAATT TGTTTGTCTT 83322 .......... .......... .......... .......... .......... .......... 321 GATTTTAAAT GTTTTAACTG ACAATTTAAA ATATTTATAA AAAATAAATA AAAATTTCGA 83262 .......... .......... .......... .......... .......... .......... 321 TTGATTCATA AAATTAATCT ATCTATGTCA CATAAAAAGG ATAGAAGAAG TAACATGTAT 83202 .......... .......... .......... .......... .......... .......... 321 TATTTAATTT GGAAACTACG ATAGAAAATA TTGTAAATCT CAATAATTAA CAACATTTGA 83142 .......... .......... .......... .......... .......... .......... 321 TTGACTCTTG AAATTCTATT TGTGCTACAT ACATTGGGAT AAGAGAAGTA ACATATATTA 83082 .......... .......... .......... .......... .......... .......... 321 TTAAAAAATA CGTAAAAATT ACTATAAATT ACAATAATCA AAAGAAGTAA CATTAAATAT 83022 .......... .......... .......... .......... .......... .......... 321 TTAATTTGAA AACTACGTAG AAAATATTGT AAATTCAATA ATTAACAACA TTTGATTGAC 82962 .......... .......... .......... .......... .......... .......... 321 TCTTGAAATT CTATCGGTAT CACTTACATT GGGATATCAC TTACATTGGG ACAAAAGAAG 82902 .......... .......... .......... .......... .......... .......... 321 TAATATATAT TATTTAAAAA TTACAGTAAA ATACTATAAA TTACAACAAC TACTTAAATT 82842 .......... .......... .......... .......... .......... .......... 321 TTTTTAAAAT TCATGTCAAA ATTTAATCTA CTATTTAATT CCATCTATAT CGCATAAACT 82782 .......... .......... .......... .......... .......... .......... 321 GAAATAAAAA AATAACAGAT ATTGAATCAG TGAATAGATA CCGATGTCTA GTATATATAT 82722 .......... .......... .......... .......... .......... .......... 321 TTAATAATTG GCTCTAACAT GATATGACCT TATTGGATAA ATACTAAAAG AACAGAAAAA 82662 .......... .......... .......... .......... .......... .......... 321 TTTGTTTCCA AATTTTCCTT CTTTAGTTGT TGGATAAGAA AAGGAAAATT TTCCATGTAT 82602 .......... .......... .......... .......... .......... .......... 321 AGGTAGGACA GTTGGACAAT TAACTCTTAT GTAATTTCGT CCATCTTACT AACAAAACTT 82542 .......... .......... .......... .......... .......... .......... 321 GAATTATACA TCTCATTTCC ATACAAATTT AAAATAAAAG TAACCTTATG ACACAATAAT 82482 .......... .......... .......... .......... .......... .......... 321 GAGTAAATCG ATAACCTGAT TAAACTATCA TAAAAATAAA GTGAAAAGAA AGATAAAACT 82422 .......... .......... .......... .......... .......... .......... 321 ATAATTTGCA CACTTATTCA AGTATTCCTT TGGCTTTAAA AATCACACAA TTGAAAAGAA 82362 .......... .......... .......... .......... .......... .......... 321 ATTTGAATGG AGAAAATTTA ACATAAGAGA ATTTCGATTT CTATAGTTGA TAAAGTAATT 82302 |||| | ||| ||| |||| | | || || | | | .......... ....AATTGA TCATCTTAGA GTTTCACTAT CTCGAGCT-- TTAG...... 359 TTTTAAAATT TATCATCATA TTAATTATTA AATTTGAAAA AAATAATTAC ACTCGACTTT 82242 .......... .......... .......... .......... .......... .......... 359 TCCAAAATAA CAAGTGAAAC TAGTTACATG AAAAATTATT AGCATGCAAC TTGATATAGC 82182 .......... .......... .......... .......... .......... .......... 359 AAATTAAATA TACATCTTTT ATTATATTTA CTATAAAGAT GGATCTTAGA ATTACTCTTA 82122 .......... .......... .......... .......... .......... .......... 359 GAGCCTGTTT GGCTCAGCTT AAAAGCTGGT CAAACTGACT TAAAAGCTGA TTTTTGACTT 82062 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| .AGCCTGTTT GGCTCAGCTT AAAAGCTGGT CAAACTGACT TAAAAGCTGG TTTTTGACTT 418 GTTTAGCTGT TTGGCAATAC TCAAAATAAC TTATTTTAAG TTAAAAAAAA CTTATTTTAA 82002 |||| ||| |||||||||| |||||||| | |||||||||| || ||||||| |||||||||| ATTTAAATGT TTGGCAATAC TCAAAATAGC TTATTTTAAG TT-AAAAAAA CTTATTTTAA 477 GCCAAAAGTT AAAAGCTGGG TAGGGGTGCT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT 81942 |||||||| | | | | | | | |||||||||| |||||||||| |||||||||| GCCAAAAG-T ----G-T-GC T-----T--T TTTTTTTTAG CTTATAAGCT GTTTTAAGTT 523 GACCACATTT TTATCTTTTT GCTCTTAATA TTTTTATACA ATCTCCAAAT TATCCATATA 81882 ||||| |||| |||| ||||| | ||||||| |||||||||| |||||||||| || ||||||| GACCATATTT TTATGTTTTT TCCCTTAATA TTTTTATACA ATCTCCAAAT TACCCATATA 583 ACCCTAACAT TTCTTTCTTC CATTTTTCTC TTTTCACGTT TGACATAACA ACTTCAGCAC 81822 || ||||| | ||||||||| ||||||| | |||||||||| || ||||||| |||||| ||| ACACTAACTT CTCTTTCTTC TATTTTTCCC TTTTCACGTT TGGCATAACA ACTTCAACAC 643 TTTTATCCAA ACGCATAA 81804 |||||||||| |||||||| TTTTATCCAA ACGCATAA 661 hqPGS_C08HBa0235H18.1-_SGN-U313322+ (82120 81804) ******************************************************************************** EST sequence 6 -strand 1289 n (File: SGN-U313328-) 1 TTTCCAAATG AAACAAAAGA CAATTAGGTG TTAGTTGATA AATATTAAGC GTTAAATTCG 61 ATTTTTTATA TATAAGTTTT CTAGTGCTTA AATATAATTG GGAAGGTCAA GGGGTTTGTG 121 ACTTAAGTTA GTGATGTCTG GTATTTAAGT GGAGATACGT AAAAAGACAA AATTATTATC 181 TCTGTGTTAC ATAGTTGCAA GTTGCAACTA TTTCTAACAA TCGACTCTAG ATGATTTTTT 241 TCGATTAAAA TAATAAAAAA AGAAATTTAT ATGAATAGTT ATTTTTTTAA CCAAAGTGCA 301 TAAATTGGAA ACTCATAAAT TTGTGACTTA GGTTACATGG TTGAGAACTG CCTCAAACTT 361 ATAATGTCTA CTATTTAAGT GGAGATACGT AAAAGAAAAA ATTATTGTCT AAGAGCTTGT 421 TTAGTTCAGC TTAAAAGCTG ATCAAACTGA CTTAAAAACT GATTTTTGAC TTATTTAGTT 481 GTTTGGCAAT ACTCAAAATA ACTTATTTTA AGTTAAAAAA AAAAACTTAT TTTAAGCCAA 541 AAGTTAAAAG CTGGGGTAGG GGTGCTTTTT TTTTAGCTTA TAAGCTGTTT TAAGTTGACC 601 ACATTTTTAT CTTTTTGCCC TTAATATTTT TATACAATCT CCAAATTATC CACATAACTC 661 TAACATCTCT TTCTTCCATT TTTCCATTTT CACGTTTGGC ATAGCAACTT CAACACTTTT 721 ATCCAAATGC ATAACTTTTA AAAGTACTTT TTTAAAGCTA AGTCCATCCA AACGGGCCCT 781 AAGAATGAAC TCTACATGAA TTTTTCGATC AAAATAAACA TAATTTTGTA TAATTAATTA 841 TTTTTAAAAA ATTTATGATT AAACGAGAGT TTAGAGAGTT GATTACCAAG TAGAGCAACA 901 GTTCCTTCAG TATCAACACC AATTGATTGA AATCTTGAAA GCACAGATGA GATTGAATCG 961 TTGTGATTAG GGAGGTACTT CTCAACTTCT GAAAAGTAAG TTTCCTTGCT ATCTTTCCTT 1021 CCTGTTTTCA TTTCAATTTT TATTGGCCCT CCTAACCAAA GAAGACCATC ATGAAAAAGA 1081 TTTCTAATCC AAGAAACTGC TGTGTTCCCA TGTTTGTGGT ACAATGTTGC CACTTGTTCT 1141 TTGATGATAT CTTCAGCTCT TGGGCAACTC TTTGTGTAGT AATTTAATTG GAGCTCACTT 1201 TTTACATTAT GAATGTGAAG AAGTAGAGGT AATAACAATA AGAGAAATCT TGAACAATTG 1261 GCCATGTCTT TGATGTGTAA TGAAGTGTT Predicted gene structure (within gDNA segment 88054 to 75204): Exon 1 86904 86852 ( 53 n); cDNA 267 318 ( 52 n); score: 0.642 Intron 1 86851 86802 ( 50 n); Pd: 0.000 (s: 0.65), Pa: 0.709 (s: 0) Exon 2 86801 86787 ( 15 n); cDNA 319 333 ( 15 n); score: 0.467 Intron 2 86786 84393 (2394 n); Pd: 0.471 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 84392 84348 ( 45 n); cDNA 334 376 ( 43 n); score: 0.644 Intron 3 84347 82636 (1712 n); Pd: 0.625 (s: 0.64), Pa: 0.165 (s: 0) Exon 4 82635 82599 ( 37 n); cDNA 377 413 ( 37 n); score: 0.581 Intron 4 82598 82121 ( 478 n); Pd: 0.000 (s: 0), Pa: 0.574 (s: 0.90) Exon 5 82120 81810 ( 311 n); cDNA 414 728 ( 315 n); score: 0.913 Intron 5 81809 81619 ( 191 n); Pd: 0.798 (s: 0.88), Pa: 0.000 (s: 0.56) Exon 6 81618 81554 ( 65 n); cDNA 729 791 ( 63 n); score: 0.600 Intron 6 81553 80674 ( 880 n); Pd: 0.000 (s: 0.58), Pa: 0.992 (s: 0) Exon 7 80673 80665 ( 9 n); cDNA 792 800 ( 9 n); score: 0.778 Intron 7 80664 79356 (1309 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62) Exon 8 79355 79287 ( 69 n); cDNA 801 865 ( 65 n); score: 0.667 MATCH C08HBa0235H18.1- SGN-U313328- 0.809 604 0.469 C PGS_C08HBa0235H18.1-_SGN-U313328- (86904 86852,86801 86787,84392 84348,82635 82599,82120 81810,81618 81554,80673 80665,79355 79287) Alignment (genomic DNA sequence = upper lines): TTCCAT-AAT TGTTATTTTT AGTAACCAAA -AGCCTGCAT TGACGAACCT CATCTCTAAT 86847 || || ||| ||||||||| |||||||| || | || || ||| || ||| TTATATGAAT AGTTATTTTT -TTAACCAAA GTGCATAAAT TG--GAAACT CATAA..... 318 TTTGGCCCAC AATGTGGTGT ATTAGCTTTG GTCATTGGGC CCTAGGCCTT TGATCTAGTG 86787 | ||| ||| .......... .......... .......... .......... .....ATTTG TGACTTAGGT 333 GTAAGAGCGT AAAGCATGAT GTGCGTGTTA GTCACAGTTC ATATTTCGAA CTTGGACCCT 86727 .......... .......... .......... .......... .......... .......... 333 GACAAAGCCG CGTTCATTAT CCAGAGTTTT GAACCATGCG CTATATTGTC CCTTGGGAAT 86667 .......... .......... .......... .......... .......... .......... 333 TTCTTAGTTA TAAAAGATAT ATGGCTGATC ATTGAAATTT AATATTCTAG ACAATTTTTT 86607 .......... .......... .......... .......... .......... .......... 333 TCTTGTAGGC TGGTTTAATT GTGTTTGACC TTTTGCTTTC ATTTCCTAAT TATTTTAATT 86547 .......... .......... .......... .......... .......... .......... 333 CCTTGATTTC CAATACTAAA TAATTTTTCT TGTATTTTCA TAATAGAAGT TTTCTGAATT 86487 .......... .......... .......... .......... .......... .......... 333 TCACACTTCC CCGAAACCAA GGTAAATTTT TTTAACCAGA TCTTAAAGAG TCCTGACCAC 86427 .......... .......... .......... .......... .......... .......... 333 ACTGAATTTA TCCATTGGTG ATGTAACTCA GCTAGTTGAT ATTTGCCTAT ATGGATCTTT 86367 .......... .......... .......... .......... .......... .......... 333 TGCTTCTATT ATGCTTGGAT TTTAGATATC TTTTGCAAGA GATATTCAGC GACTATTTGA 86307 .......... .......... .......... .......... .......... .......... 333 GAAACAACAA TTATGTTTCT TTCACTTTCT AGGACTTGTT CGTTGCTGAC GGAGAAGGGC 86247 .......... .......... .......... .......... .......... .......... 333 TTCCCCGATC ACTAGTTGAA GAAGAAGCGA GATTCGCTCA TCAAATCCTC AGTTTATTTT 86187 .......... .......... .......... .......... .......... .......... 333 CCCTCCGGGT TTGTTAAGAA TTAATTAAAG CTTTTAGCCT GTTTCTGTAT GCATGCTGTG 86127 .......... .......... .......... .......... .......... .......... 333 GGACCTATTT AATATTTTGG TTTTCGTAGC AGGCTGAATC TGTGATCCAA TTGTTGATGA 86067 .......... .......... .......... .......... .......... .......... 333 CTTCTAGTGA ACACAGTTCA GGACTTGAAG CACATAAATA TGGCCACAGA CATCTGGGAG 86007 .......... .......... .......... .......... .......... .......... 333 ATGCACACAC CTTGATACGC GTTTTATGTC ACAAGAAGGA GAGAGAAGCT TCAAAATTCT 85947 .......... .......... .......... .......... .......... .......... 333 TGAAGCGCTA TTACCACCTC CCACCATCGT CAGGTGCCCT TTCGAATCCT TTTAGTTTGT 85887 .......... .......... .......... .......... .......... .......... 333 TATGGTTTCC CAAAAGGCTG ATATGATAAA GTATATATTT CACCTCCTGA AATCCAATTT 85827 .......... .......... .......... .......... .......... .......... 333 TTTTTTTTGG AGCGCAGTGT ACAGTGGGGC TGCAGTGGAG GATTCCTCTA TGAAGTCGCC 85767 .......... .......... .......... .......... .......... .......... 333 ACTTATGGCA GATCTCATTA AAAGGAGTGC TTCGTTTCGT TGGTCTGACA AAAGCAGTAG 85707 .......... .......... .......... .......... .......... .......... 333 CAGTTTCAGA TCTTTAAAGA AGAAAATCCA AGACGCAACA TCAGATTTTA GGCAAGTGGG 85647 .......... .......... .......... .......... .......... .......... 333 ATGGTGATGA TGGACGCCTT CCTAACAGCA TATCGCCCAT TAAAGGTACT CGTTAAAAGT 85587 .......... .......... .......... .......... .......... .......... 333 TGCATATATG CAAATTGCAT TTAAATGAAG AATGAGAGGG TACTCCATTC TGGGAGTATT 85527 .......... .......... .......... .......... .......... .......... 333 ATTCTCAGAA AATTTTGTCA TGTTTGCTTC TAACTTTGAA GATGTAGATC AATGTTGTAA 85467 .......... .......... .......... .......... .......... .......... 333 ACTCTGGGTC TCAACTATAA AAGTAAAAGT AACATTCCCA GATTATAGTA TATCTACATC 85407 .......... .......... .......... .......... .......... .......... 333 TCATACCTAG TTAGCAAATC AACATTGTGA CATATCATGT ATGCCTGTCC TTACTTTGCA 85347 .......... .......... .......... .......... .......... .......... 333 TCCACATTAT TGAAATTTTA TGTCATTATA TATGAGAAAA TTCAAATAGA AGTCTCAACT 85287 .......... .......... .......... .......... .......... .......... 333 TACCTACCTT GTTAATTAAT GCACCATAAA AGATGTGATT TAAGACACAT GGAGCAACTT 85227 .......... .......... .......... .......... .......... .......... 333 TATACTAGCA ATAACAACAT AACCTATGCT TGCAAAAATA ATTATAGTAA TTGAGGCAGC 85167 .......... .......... .......... .......... .......... .......... 333 ACATTTCATT TTCACAGTCT ATTGCTACAC ATTCCTTACT AAGAGCACTT AACTATGGAA 85107 .......... .......... .......... .......... .......... .......... 333 GCTATGATAA TATATAAGAA TTTTGCAGGT TTTTCAAGAT GTAAATAACG TCTTTAAATT 85047 .......... .......... .......... .......... .......... .......... 333 AAGTAAGAAT ATGAATATTT TAATCATATT GAAATAAACT CGATCTTATT TTCTTATAAT 84987 .......... .......... .......... .......... .......... .......... 333 TATGATGTCT GAGCTAGTTT GCCACTGTCT CAGAAAGAGA CCTGGCGATC TTCTCGTGGA 84927 .......... .......... .......... .......... .......... .......... 333 CTTTTTTCGG ATAAGTTTTA GGAATCACAT AGTTTTAATA TGAAAATCAT AATTTATTCC 84867 .......... .......... .......... .......... .......... .......... 333 TATTTAGTTT TGTAACTACA TTAATCCCTT AAAAAGTAAT ACAAATTGGA TACATTAAAG 84807 .......... .......... .......... .......... .......... .......... 333 GGTATCTCGG ATACATTATA ACATAAACTG AATACACACA TATGCAGTTT GGATACACTA 84747 .......... .......... .......... .......... .......... .......... 333 AAACTAGATC TGATACATAA TATGTAGCTC GGATACATTA TAAAATAAAT GAATATATAT 84687 .......... .......... .......... .......... .......... .......... 333 ATATGTAGCT TGAATACATT AAATGTTGGT TCAAATTCAT TGATATGTAG TTCGGATACA 84627 .......... .......... .......... .......... .......... .......... 333 TTAAAGACGT AAGGAATTTT AGAGATTTTA AAAATAAAAT AAAAAATTAA AAATAAGGGA 84567 .......... .......... .......... .......... .......... .......... 333 AACACCAGAC GTGTATTAAT TTTTCCTTAA TTTTTCTTCT TAGCAACTTC TAATATTTGA 84507 .......... .......... .......... .......... .......... .......... 333 GAAGTGAGCA CTAGGAAGGT TCGTTAATAT AAAGGCTCAA TTTATTTCTT GGTCTCATTT 84447 .......... .......... .......... .......... .......... .......... 333 TATTAATTAA TTATTAGTAT GGTTGACTAT TAATTATTTT ATCACTATAA CTAGTTTATG 84387 | ||| .......... .......... .......... .......... .......... ....TACATG 339 ATTGAGACAT GCAGCTAACT GATTAATTGA TTGCTTTTGG TAATAATCCT AAAACTTTTC 84327 |||||| | || | |||| | ||| || | || || GTTGAGAACT GCCTCAAACT TA-TAA-TGT CTACTATTT. .......... .......... 376 AAATTATCGT AACCCTACAG AACCTCCTTA GCAGTTTCCA TATTTCTTCT ACAATACATG 84267 .......... .......... .......... .......... .......... .......... 376 TAGATGATAA AAGTTTTTCT CGTCGAATTA GCTCACTAGA AAAGTATTCT TACCGAAATA 84207 .......... .......... .......... .......... .......... .......... 376 TTAAAAAGCT TACTAATTTT CCTGTGTAAA AACACTAGTA ATATTATTTT TTCTGTTTCT 84147 .......... .......... .......... .......... .......... .......... 376 CACTAATACA ATTAAAATAT AAATGAAGAT AGTTACTAAA TAATTATCTT CATTTGATTA 84087 .......... .......... .......... .......... .......... .......... 376 AATAATTGAT CAATATAATT AAAATGTGCA TTTTTTTATT TTCTGAGTTT TCCTGATTTT 84027 .......... .......... .......... .......... .......... .......... 376 TAAGTGGGAT TTTGTGTTAG AGGATAGAAC CGTTTGGAAT ACGTAAGAAT TTAAAAGAAC 83967 .......... .......... .......... .......... .......... .......... 376 AAAAAAAAAA AGTTAGTCAA AAAGCATTAT AATTGAGAGG TATAATCCCA CATAGGTTAA 83907 .......... .......... .......... .......... .......... .......... 376 TCAATATATC TTAATTATCA TAACTATTAT CATGTGTTAA TTTACTCTTA ATAAAATCCC 83847 .......... .......... .......... .......... .......... .......... 376 TTCAAAAAGT GTAATTCAAT TTTTGGATAG CAGATAGTAG TTATTTAATC AAAATAATTG 83787 .......... .......... .......... .......... .......... .......... 376 AAATTTGCAC AAATTAACTC ATTTCAGTGA TAATTATTTT TTAAAAATAA AATTTGGTAA 83727 .......... .......... .......... .......... .......... .......... 376 CATATTAGGA ATGGAACTTC TAGATGAAAT AGAAGGAAAA AGCAAAAAGA GGAAAGAAAT 83667 .......... .......... .......... .......... .......... .......... 376 TACACATATA CGAGTGACAA TAACTAGGCA GGTCATGATT GATATGTCTG GTGGGCATTT 83607 .......... .......... .......... .......... .......... .......... 376 ATATTTTTAT TTTTTTATTT GTTTTAATTT GTTTGTTTTG ATTTATAAAT TTTATTATAT 83547 .......... .......... .......... .......... .......... .......... 376 TTAAGTGACA ACAAACAGAC AGGTCATGAT CGACATGCAT GCTTGCGCGA TAGCTACACT 83487 .......... .......... .......... .......... .......... .......... 376 ATTTACCTTT TTCTATGATT CTTCCGTTTT AATTTGTTTG TCTTGATTTT AATTTTTTTT 83427 .......... .......... .......... .......... .......... .......... 376 TATATATATA AGTGATAGTA ACCAGGGAGG TCATGGTCGA CCCTACCTGA CAGCTGCATT 83367 .......... .......... .......... .......... .......... .......... 376 ATTTTTTCTT TTTCGGTGGT TCTTCCGTTT TAATTTGTTT GTCTTGATTT TAAATGTTTT 83307 .......... .......... .......... .......... .......... .......... 376 AACTGACAAT TTAAAATATT TATAAAAAAT AAATAAAAAT TTCGATTGAT TCATAAAATT 83247 .......... .......... .......... .......... .......... .......... 376 AATCTATCTA TGTCACATAA AAAGGATAGA AGAAGTAACA TGTATTATTT AATTTGGAAA 83187 .......... .......... .......... .......... .......... .......... 376 CTACGATAGA AAATATTGTA AATCTCAATA ATTAACAACA TTTGATTGAC TCTTGAAATT 83127 .......... .......... .......... .......... .......... .......... 376 CTATTTGTGC TACATACATT GGGATAAGAG AAGTAACATA TATTATTAAA AAATACGTAA 83067 .......... .......... .......... .......... .......... .......... 376 AAATTACTAT AAATTACAAT AATCAAAAGA AGTAACATTA AATATTTAAT TTGAAAACTA 83007 .......... .......... .......... .......... .......... .......... 376 CGTAGAAAAT ATTGTAAATT CAATAATTAA CAACATTTGA TTGACTCTTG AAATTCTATC 82947 .......... .......... .......... .......... .......... .......... 376 GGTATCACTT ACATTGGGAT ATCACTTACA TTGGGACAAA AGAAGTAATA TATATTATTT 82887 .......... .......... .......... .......... .......... .......... 376 AAAAATTACA GTAAAATACT ATAAATTACA ACAACTACTT AAATTTTTTT AAAATTCATG 82827 .......... .......... .......... .......... .......... .......... 376 TCAAAATTTA ATCTACTATT TAATTCCATC TATATCGCAT AAACTGAAAT AAAAAAATAA 82767 .......... .......... .......... .......... .......... .......... 376 CAGATATTGA ATCAGTGAAT AGATACCGAT GTCTAGTATA TATATTTAAT AATTGGCTCT 82707 .......... .......... .......... .......... .......... .......... 376 AACATGATAT GACCTTATTG GATAAATACT AAAAGAACAG AAAAATTTGT TTCCAAATTT 82647 .......... .......... .......... .......... .......... .......... 376 TCCTTCTTTA GTTGTTG-GA TAAGAAAAGG AAAATTTTCC ATGTATAGGT AGGACAGTTG 82588 || | || || | ||| | |||| || ||| || | .......... .AAGTGGAGA TACGTAAAAG AAAAAATT-A TTGTCTAAG. .......... 413 GACAATTAAC TCTTATGTAA TTTCGTCCAT CTTACTAACA AAACTTGAAT TATACATCTC 82528 .......... .......... .......... .......... .......... .......... 413 ATTTCCATAC AAATTTAAAA TAAAAGTAAC CTTATGACAC AATAATGAGT AAATCGATAA 82468 .......... .......... .......... .......... .......... .......... 413 CCTGATTAAA CTATCATAAA AATAAAGTGA AAAGAAAGAT AAAACTATAA TTTGCACACT 82408 .......... .......... .......... .......... .......... .......... 413 TATTCAAGTA TTCCTTTGGC TTTAAAAATC ACACAATTGA AAAGAAATTT GAATGGAGAA 82348 .......... .......... .......... .......... .......... .......... 413 AATTTAACAT AAGAGAATTT CGATTTCTAT AGTTGATAAA GTAATTTTTT AAAATTTATC 82288 .......... .......... .......... .......... .......... .......... 413 ATCATATTAA TTATTAAATT TGAAAAAAAT AATTACACTC GACTTTTCCA AAATAACAAG 82228 .......... .......... .......... .......... .......... .......... 413 TGAAACTAGT TACATGAAAA ATTATTAGCA TGCAACTTGA TATAGCAAAT TAAATATACA 82168 .......... .......... .......... .......... .......... .......... 413 TCTTTTATTA TATTTACTAT AAAGATGGAT CTTAGAATTA CTCTTAGAGC CTGTTTGGCT 82108 ||| ||||| | | .......... .......... .......... .......... .......AGC TTGTTTAGTT 426 CAGCTTAAAA GCTGGTCAAA CTGACTTAAA AGCTGATTTT TGACTTGTTT AGCTGTTTGG 82048 |||||||||| |||| ||||| |||||||||| | |||||||| |||||| ||| || ||||||| CAGCTTAAAA GCTGATCAAA CTGACTTAAA AACTGATTTT TGACTTATTT AGTTGTTTGG 486 CAATACTCAA AATAACTTAT TTTAAGTT-- -AAAAAAAAC TTATTTTAAG CCAAAAGTTA 81991 |||||||||| |||||||||| |||||||| ||||||||| |||||||||| |||||||||| CAATACTCAA AATAACTTAT TTTAAGTTAA AAAAAAAAAC TTATTTTAAG CCAAAAGTTA 546 AAAGCT-GGG TAGGGGTGCT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GACCACATTT 81932 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGGGG TAGGGGTGCT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GACCACATTT 606 TTATCTTTTT GCTCTTAATA TTTTTATACA ATCTCCAAAT TATCCATATA ACCCTAACAT 81872 |||||||||| || ||||||| |||||||||| |||||||||| |||||| ||| || ||||||| TTATCTTTTT GCCCTTAATA TTTTTATACA ATCTCCAAAT TATCCACATA ACTCTAACAT 666 TTCTTTCTTC CATTTTTCTC TTTTCACGTT TGACATAACA ACTTCAGCAC TTTTATCCAA 81812 ||||||||| |||||||| |||||||||| || |||| || |||||| ||| |||||||||| CTCTTTCTTC CATTTTTCCA TTTTCACGTT TGGCATAGCA ACTTCAACAC TTTTATCCAA 726 ACGCATAACT GCTTATTTTA AAAATAAGTT TCAGCACTTT TAAAAGTACT TTTTTAAAGC 81752 | AT........ .......... .......... .......... .......... .......... 728 TACTTTTATT AAGCCCATCC AAACGGCCCT TACTCTAATT ATTATAGAAA ATGAATTTAA 81692 .......... .......... .......... .......... .......... .......... 728 TATAAGATGT ATCCTTAAAA GAAATGAAAC TAAAAAGTTG ATTTTTTTTT AGTTTCAATT 81632 .......... .......... .......... .......... .......... .......... 728 AATGTTTTAA AAGGCATAAT TAAGAGAATT AATTATAAAC AAATTAAAGT GTAACTAAAA 81572 |||||| | | || | | || | | || | |||| | | ||| .......... ...GCATAAC TTTTAAAAGT ACTTTTTTA- AAGCT-AAGT CCATCCAAAC 773 CCCCCTAAAA AAGGAACTAT TTAATGATCA AATGAGAACA ACAACATTAA TTATCACAAA 81512 || || || ||||| GGGCCCTAAG AATGAACT.. .......... .......... .......... .......... 791 CTAATCATCG ACAAATTAAA ATTCACCATT TTCTCCAAAG AAATAAACTT TTAAAGTCAA 81452 .......... .......... .......... .......... .......... .......... 791 GAAACATATC ATTCCACAAA TTCTTTTTAG ATAATTTATA TATAGTGAGA ATATTCTTTA 81392 .......... .......... .......... .......... .......... .......... 791 CTGTCAACAT ATATAACACA AATAATACAA TATCGTTCAT TTGTCTTACA ACATATTTGT 81332 .......... .......... .......... .......... .......... .......... 791 TGATGATGCC ATCATCGGAA TTCCAAAAAT CGGCGAGTAC TTACTCACCT TCTGTAAATA 81272 .......... .......... .......... .......... .......... .......... 791 TGTCATTAAC GATGATCAAT TAAAATTCAC GATTTTCTCC AAACAAATAA GCTTTTAAAG 81212 .......... .......... .......... .......... .......... .......... 791 TCTAACAAAC ATAGCATTCC ACAAACTTTT TTTAGATAAT TTATATATAA TGACAATGTC 81152 .......... .......... .......... .......... .......... .......... 791 CTTTACTGTC AACGTATGTA ACTTAAATAA TATGATATCG TTCATTTGTC TTACAACATA 81092 .......... .......... .......... .......... .......... .......... 791 TTTGTCGATG ATGCCATCAG CGGAATTCCA AGAACCGGCG AGTACTCACT CACCTTCGGT 81032 .......... .......... .......... .......... .......... .......... 791 AAATACGTCA CTAACGGTGA TCGTTGAGGA TGCATTCCCA AAACAAACGA AGTACCCAAT 80972 .......... .......... .......... .......... .......... .......... 791 TTAACGGCAA CATTGACAAC TCCGTTACCT CTTGAACCAT CTTTATTCCG TAGCCTATAG 80912 .......... .......... .......... .......... .......... .......... 791 CTAAATTGCC GGAGAAAACC CGCCGGAAGT AACCCGTTGA ATACGTCGGC CGCCGAAATC 80852 .......... .......... .......... .......... .......... .......... 791 ATACACCACC CTAGTTCACT CCGACCCTTA AGAAAATTTT TAGAATATAT TCGAATGTAT 80792 .......... .......... .......... .......... .......... .......... 791 ATACATAAAT GTCCATGTAA AAATAGACTA GCATCGATAG ATAGATGAAA TTTATCGCCC 80732 .......... .......... .......... .......... .......... .......... 791 CACATAGCAT TATAATTATT ATCGATGTTG TTGTTACGTA TTGTTTCATC AACACTAGTT 80672 | .......... .......... .......... .......... .......... ........CT 793 ATATGAAGTT CATTCGTGGA GGTGGCGGAG ACGGTGGAGA GGGTGGCGAA AGGGCGGAAC 80612 | ||||| ACATGAA... .......... .......... .......... .......... .......... 800 CGCCACGGCC AGGTGGTGGT GTTCTTGAGA CCTTGAGCTG ATATGATAGT AATTTCCATC 80552 .......... .......... .......... .......... .......... .......... 800 GACCAAAAAT TTTTTTTTTT AAGAAAAGGA AATTAAAAGA TATATAATAT AGTTTGTATG 80492 .......... .......... .......... .......... .......... .......... 800 ATGCAATTTG ATGGCTATTT TAATAATACG AGGGACGATG CACCCATGCA ACTTCGCATG 80432 .......... .......... .......... .......... .......... .......... 800 TGGAAAAAGT TTAGGTGGAC TTGAAATGTA AACGTTTAGT TACTCCTCAC GTTCGATATT 80372 .......... .......... .......... .......... .......... .......... 800 TATATTGAAA TTTGATTAAA TTTAAATTGT ACACTATAAA ATCTATTTGA AAAATTATAA 80312 .......... .......... .......... .......... .......... .......... 800 TTCTACCAAA AGTTTGAATA TGAGACTTCA GGTTAAATTT AATTATTTCA TTAGTCATAA 80252 .......... .......... .......... .......... .......... .......... 800 TTATAATTAT ATACGATCTA AATAAAAATG TTGAAATTAT TTTTAAATAT ATTAAAGATG 80192 .......... .......... .......... .......... .......... .......... 800 ATATTTTTTT AATTTAAACT GATTAAATAA AAAATATGTC ATATCAATTG AGACCGAGCT 80132 .......... .......... .......... .......... .......... .......... 800 AAAACGATAT GTTTGGATTT AACGTAAAGA AGAAGGAAAA AACTTGAATA GGATAAATGT 80072 .......... .......... .......... .......... .......... .......... 800 GACCTACTAA TATATAGTGG CCAACCATTT GAAAATTAAT TAACGAGGCC CACGCCGTTT 80012 .......... .......... .......... .......... .......... .......... 800 TTTTTTTCTT CATCAATTCT TTCTAGGAAG TAACGAGCTG ATACACTTGC AATAACGATG 79952 .......... .......... .......... .......... .......... .......... 800 AGCAATGAGA AAATAATATT ATTTTTTCAA AATGTTTTCC CCCAAAAAAT ATTTGAATTT 79892 .......... .......... .......... .......... .......... .......... 800 TGTCATATGG CCGAAACTTT TGATTTTTTT TCTTTTAGAA ACAAAAAAAA CTTTTGAAAA 79832 .......... .......... .......... .......... .......... .......... 800 AATTACATTT TAAAGGAGAA AATCAATTAT ATCAAATTTA GTTTTTACTA AATTTTTTTT 79772 .......... .......... .......... .......... .......... .......... 800 TATTTTAAAA GATTAAATTA GATTCGCAAA AAAATATTTT TTAATTCAGT AACCAACCAA 79712 .......... .......... .......... .......... .......... .......... 800 GCATTAAATT TTTTTAAAAA GTCCCCTCAT TCCATCATTT TCTTAATCAT TCTATTAGTT 79652 .......... .......... .......... .......... .......... .......... 800 GATGATTTAA CATCAAGATT CCTAAGTAGA AGGTTGTACT GATAAGTCAA GAATTTTTCC 79592 .......... .......... .......... .......... .......... .......... 800 ACAAGAGGCC AAGAAAAAAA GTGAAAAGAC GATTGATAAA TATTTACTCT ATTTTATAAA 79532 .......... .......... .......... .......... .......... .......... 800 GTATTAATAT TTGATATATA TTTTAAAGAA AATTTTAGTT AGAAATGTAT GTTATTAAAT 79472 .......... .......... .......... .......... .......... .......... 800 TAACTTTGTT AACAATACTT TGAAATTCTA AATTTATTTG TTATTATTTT ATTTAATTAT 79412 .......... .......... .......... .......... .......... .......... 800 TTAATACTAA GAATCGAAAA AATAAGATAT ATATTAGTTT AATATTTCTT TTTTTTTTTT 79352 |||| .......... .......... .......... .......... .......... ......TTTT 804 TTGGTCGAAA TCAAGCATAG AGATTTCAAA GTGATTTTTT CCACATAAAA TGATAGGATT 79292 | | || ||| | || |||| | | || | ||| ||| | | |||| | || |||| TCGATCAAAA T-AAACATAA TTTTGTATAA TTAATTATTT TTA-A-AAAA T-TTATGATT 860 AGACG 79287 | ||| AAACG 865 hqPGS_C08HBa0235H18.1-_SGN-U313328- (82120 81810) ******************************************************************************** EST sequence 59 +strand 785 n (File: SGN-U334277+) 1 CTCCACCGCG GTTGCGGCCG CTCTAGAACT AGTGGATCCC CCGGGCTGCA GGCAAAAGTG 61 TAAAACAAGC TCGAAACCTC TCAAAAATCA TCCCCCAAAT TCAACAAAAC ACTCGGAAAT 121 TCTGAGCCGA GCATCCAAAC CCCGAATGTT CACCAAAGTC AACCCAAAAG CCCACAATTT 181 CACAACTTAG GACCTCAAAT CCTCAAAAAG ACTCAGAATA CGAAACGAAC AACTCTCACA 241 ACTCAGATTC CACATTCCGG TACTGATGGT ATTGATGGAA CTTTATTCCG ACACTCGAAG 301 CTCCCAAAGG CTCCAAAAAC CACTTTTGAG CAACTTAGAG CCTGTTTGGC TCAGCTTAAA 361 AGCTGGTCAA ACTGACTTAA AAGCTGGTTT TTGACTTATT TAACTGTTTG GCAATACTCA 421 AAACAGCTTA TTTTAAGTTA AAAAAAACTC GAGGGGGGGC CCGGTACCCA ATTCGCCCTA 481 TAGTGAGTCG TATTACAATT CACTGGCCGT CGTTTTACAA CGTCGTGACT GGGAAAACCC 541 TGGCGTTACC CAACTTAATC GCCTTGCAGC ACATCCCCCT TTCGCCAGCT GGCGTAATAG 601 CGAAGAGGCC CGCACCGATC GCTCTTCCCA ACAGTTGCGC ATCCTGAATG GCGAATGGCA 661 AATTGTAAGC GTTAATATTT TGTAAAATTC GCGTTTCATT TTTGTTAAAC CAGCTCATTT 721 TTAACCAATA GGCCGAAATC GGCAAATCCC TTATAAATAA AAGAAAGAAC GAGATAGGGT 781 TGAGT Predicted gene structure (within gDNA segment 86055 to 78040): Exon 1 82120 82010 ( 111 n); cDNA 339 449 ( 111 n); score: 0.955 MATCH C08HBa0235H18.1- SGN-U334277+ 0.955 111 0.141 C PGS_C08HBa0235H18.1-_SGN-U334277+ (82120 82010) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGAT TTTTGACTTG 82061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 398 TTTAGCTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAC T 82010 |||| ||||| |||||||||| ||||| | || |||||||||| |||||||||| | TTTAACTGTT TGGCAATACT CAAAACAGCT TATTTTAAGT TAAAAAAAAC T 449 hqPGS_C08HBa0235H18.1-_SGN-U334277+ (82120 82010) ******************************************************************************** EST sequence 73 +strand 862 n (File: SGN-U329745+) 1 GGGTATTACT AGATGGAGGT CCATCACGTG CATTTTCTGA ATTTGATGTT GTCATGATGG 61 AAGATGACCT CAATATATTA AAAGACTTGT TCGTTGCTGA CGGAGAAGGG CTTCCCCGAT 121 CACTAGTTGA AGAAGAAGCG AGATTCGCTC ATCAAATCCT CAGTTTATTT TCCCTCCGGG 181 CTGAATCTGT GATCCAATTG TTGATGACTT CTAGTGAACA CAGTTCAGGA CTTGAAGCAC 241 ATAAATATGG CCACAGACAT CTGGGAGATG CACACACCTT GATACGCGTT TTATGTCACA 301 AGAAGGAGAG AGAAGCTTCA AAATTCTTGA AGCGCTATTA CCACCTCCCA CCATCGTCAG 361 TGTACAGTGG GGCTGCAGTG GAGGATTCCT CTATGAAGTC GCCACTTATG GCAGATCTCA 421 TTAAAAGGAG TGCTTCGTTT CGTTGGTCTG ACAAAAGCAG TAGCAGTTTC AGATCTTTAA 481 AGAAGAAAAT CCAAGACGCA ACATCAGATT TTAGGCAAGT GGGATGGTGA TGATGGACGC 541 CTTCCTAACA GCATATCGCC CATTAAAGGT ACTCGTTAAA AGTTGCATAT ATGCAAATTG 601 CATTTAAATG AAGAATGAGA GGGTACTCCA TTCTGGGAGT ATTATTCTCA GAAAATTTTG 661 TCATGTTTGC TTCTAACTTT GAAGATGTAG ATCAATGTTG TAAACTCTGG GTCTCAACTA 721 TAAAAGTAAA AGTAACATTC CCAGATTATA GTATATCTAC ATCTCATACC TAGTTAGCAA 781 ATCAACATTG TGACATATCA TGTATGCCTG TCCTTACTTT GCATCCACCA TTATTGAAAT 841 TTTATGTCAT TAAAAAAAAA AA Predicted gene structure (within gDNA segment 88630 to 84609): Exon 1 88030 87948 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 87947 86275 (1673 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 86274 86179 ( 96 n); cDNA 84 179 ( 96 n); score: 1.000 Intron 2 86178 86095 ( 84 n); Pd: 0.951 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 3 86094 85914 ( 181 n); cDNA 180 360 ( 181 n); score: 1.000 Intron 3 85913 85810 ( 104 n); Pd: 0.902 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 4 85809 85309 ( 501 n); cDNA 361 862 ( 502 n); score: 0.985 MATCH C08HBa0235H18.1- SGN-U329745+ 0.991 861 0.999 C PGS_C08HBa0235H18.1-_SGN-U329745+ (88030 87948,86274 86179,86094 85914,85809 85309) Alignment (genomic DNA sequence = upper lines): GGGTATTACT AGATGGAGGT CCATCACGTG CATTTTCTGA ATTTGATGTT GTCATGATGG 87971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTATTACT AGATGGAGGT CCATCACGTG CATTTTCTGA ATTTGATGTT GTCATGATGG 60 AAGATGACCT CAATATATTA AAAGTAAGTT CCTCTTCTAA CTTTCTTATT ACTTGTGGTT 87911 |||||||||| |||||||||| ||| AAGATGACCT CAATATATTA AAA....... .......... .......... .......... 83 ATTGTGCTTG TTAAAGCAGC AGTTGAATTT GGTGTTCTCA AGCAGTATTT ATTTCACTTG 87851 .......... .......... .......... .......... .......... .......... 83 CATAGAACAC TTCCCTTCCT GGTGTAGTGT TCCAATGATA TCTTTTTCCT ATTCAAAATG 87791 .......... .......... .......... .......... .......... .......... 83 GTACTGTGAA TTAAACTGAA GTTACATACG GGACAATTGA GAACTTCCTT TGCCTCTTGC 87731 .......... .......... .......... .......... .......... .......... 83 TACCTTCTTC TAAGAAGGAT GTCTCATAAG TTCTGTAATC TTCTAAAGGC AAGAAGTCAC 87671 .......... .......... .......... .......... .......... .......... 83 ACTGAGACTC CCAGAGTAGC TGTTAGTATT ATTAATAAGA GAAACTCTGT TATAGCCATT 87611 .......... .......... .......... .......... .......... .......... 83 TGTGTACGTC ATATGTACTA TACAGATTAA GGAATACATA GAGTTGCTTG CAATTTCAGT 87551 .......... .......... .......... .......... .......... .......... 83 TCTTGACTGT TGCCAGCAAG TATAGAAAAA GTGTATATTC TAGGTAGTGT CTTCTTTCAA 87491 .......... .......... .......... .......... .......... .......... 83 ATAATAGATT CTTTTTAGGT GTGATATCTT CTGAAAAATT CACGTTCACC TTGAGTTTTT 87431 .......... .......... .......... .......... .......... .......... 83 GTAGAGAACT CTTGTCATGT TCGTCAGTTT AATATTTAGC AGCCCTTAGA AAATATAGAA 87371 .......... .......... .......... .......... .......... .......... 83 TCTGAATTGT TTTGGTATAC TGTTTCCAAG AAGTACCTTA GTATGCCTAA TTTATGTCGA 87311 .......... .......... .......... .......... .......... .......... 83 AGGTGCGGCT CAGGTAAACC TTCAATCTTG CAACCTCATC AACGTCATCA CCAGTGACCA 87251 .......... .......... .......... .......... .......... .......... 83 CGATATTCTG AACATTTACT GATCTTCTTG AAGGCCATTT CATTATTTGG TTTTGACAAA 87191 .......... .......... .......... .......... .......... .......... 83 AGATTCAATA GCGTATTTAT GCACCTCTGT TAAACTTTCC TTTTTGTAAT GATGTCATCA 87131 .......... .......... .......... .......... .......... .......... 83 TCTGTTTGAG TCAGCTTAAA GTCTTCTTAC TTGTCAGGAA TATCATGTAT CCAATCAATT 87071 .......... .......... .......... .......... .......... .......... 83 CTTTTGAAAA ATTGTTCACA ATCCTCTGAT ATGTTTGACA GATATTCTTA GTTAGGTCAT 87011 .......... .......... .......... .......... .......... .......... 83 TCAAGTTTCA ACTAGGACAA GGATTTCTGT AACTATGTAG ATTCGTAATA AGTTATCTTT 86951 .......... .......... .......... .......... .......... .......... 83 TCTCTGAGCT AATGATCCTT GTCTCTCGTT CTCTTATTTA TTATAGTTCC ATAATTGTTA 86891 .......... .......... .......... .......... .......... .......... 83 TTTTTAGTAA CCAAAAGCCT GCATTGACGA ACCTCATCTC TAATTTTGGC CCACAATGTG 86831 .......... .......... .......... .......... .......... .......... 83 GTGTATTAGC TTTGGTCATT GGGCCCTAGG CCTTTGATCT AGTGGTAAGA GCGTAAAGCA 86771 .......... .......... .......... .......... .......... .......... 83 TGATGTGCGT GTTAGTCACA GTTCATATTT CGAACTTGGA CCCTGACAAA GCCGCGTTCA 86711 .......... .......... .......... .......... .......... .......... 83 TTATCCAGAG TTTTGAACCA TGCGCTATAT TGTCCCTTGG GAATTTCTTA GTTATAAAAG 86651 .......... .......... .......... .......... .......... .......... 83 ATATATGGCT GATCATTGAA ATTTAATATT CTAGACAATT TTTTTCTTGT AGGCTGGTTT 86591 .......... .......... .......... .......... .......... .......... 83 AATTGTGTTT GACCTTTTGC TTTCATTTCC TAATTATTTT AATTCCTTGA TTTCCAATAC 86531 .......... .......... .......... .......... .......... .......... 83 TAAATAATTT TTCTTGTATT TTCATAATAG AAGTTTTCTG AATTTCACAC TTCCCCGAAA 86471 .......... .......... .......... .......... .......... .......... 83 CCAAGGTAAA TTTTTTTAAC CAGATCTTAA AGAGTCCTGA CCACACTGAA TTTATCCATT 86411 .......... .......... .......... .......... .......... .......... 83 GGTGATGTAA CTCAGCTAGT TGATATTTGC CTATATGGAT CTTTTGCTTC TATTATGCTT 86351 .......... .......... .......... .......... .......... .......... 83 GGATTTTAGA TATCTTTTGC AAGAGATATT CAGCGACTAT TTGAGAAACA ACAATTATGT 86291 .......... .......... .......... .......... .......... .......... 83 TTCTTTCACT TTCTAGGACT TGTTCGTTGC TGACGGAGAA GGGCTTCCCC GATCACTAGT 86231 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GACT TGTTCGTTGC TGACGGAGAA GGGCTTCCCC GATCACTAGT 127 TGAAGAAGAA GCGAGATTCG CTCATCAAAT CCTCAGTTTA TTTTCCCTCC GGGTTTGTTA 86171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGAAGAAGAA GCGAGATTCG CTCATCAAAT CCTCAGTTTA TTTTCCCTCC GG........ 179 AGAATTAATT AAAGCTTTTA GCCTGTTTCT GTATGCATGC TGTGGGACCT ATTTAATATT 86111 .......... .......... .......... .......... .......... .......... 179 TTGGTTTTCG TAGCAGGCTG AATCTGTGAT CCAATTGTTG ATGACTTCTA GTGAACACAG 86051 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCTG AATCTGTGAT CCAATTGTTG ATGACTTCTA GTGAACACAG 223 TTCAGGACTT GAAGCACATA AATATGGCCA CAGACATCTG GGAGATGCAC ACACCTTGAT 85991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGGACTT GAAGCACATA AATATGGCCA CAGACATCTG GGAGATGCAC ACACCTTGAT 283 ACGCGTTTTA TGTCACAAGA AGGAGAGAGA AGCTTCAAAA TTCTTGAAGC GCTATTACCA 85931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCGTTTTA TGTCACAAGA AGGAGAGAGA AGCTTCAAAA TTCTTGAAGC GCTATTACCA 343 CCTCCCACCA TCGTCAGGTG CCCTTTCGAA TCCTTTTAGT TTGTTATGGT TTCCCAAAAG 85871 |||||||||| ||||||| CCTCCCACCA TCGTCAG... .......... .......... .......... .......... 360 GCTGATATGA TAAAGTATAT ATTTCACCTC CTGAAATCCA ATTTTTTTTT TTGGAGCGCA 85811 .......... .......... .......... .......... .......... .......... 360 GTGTACAGTG GGGCTGCAGT GGAGGATTCC TCTATGAAGT CGCCACTTAT GGCAGATCTC 85751 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TGTACAGTG GGGCTGCAGT GGAGGATTCC TCTATGAAGT CGCCACTTAT GGCAGATCTC 419 ATTAAAAGGA GTGCTTCGTT TCGTTGGTCT GACAAAAGCA GTAGCAGTTT CAGATCTTTA 85691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAAGGA GTGCTTCGTT TCGTTGGTCT GACAAAAGCA GTAGCAGTTT CAGATCTTTA 479 AAGAAGAAAA TCCAAGACGC AACATCAGAT TTTAGGCAAG TGGGATGGTG ATGATGGACG 85631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAAA TCCAAGACGC AACATCAGAT TTTAGGCAAG TGGGATGGTG ATGATGGACG 539 CCTTCCTAAC AGCATATCGC CCATTAAAGG TACTCGTTAA AAGTTGCATA TATGCAAATT 85571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCTAAC AGCATATCGC CCATTAAAGG TACTCGTTAA AAGTTGCATA TATGCAAATT 599 GCATTTAAAT GAAGAATGAG AGGGTACTCC ATTCTGGGAG TATTATTCTC AGAAAATTTT 85511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTTAAAT GAAGAATGAG AGGGTACTCC ATTCTGGGAG TATTATTCTC AGAAAATTTT 659 GTCATGTTTG CTTCTAACTT TGAAGATGTA GATCAATGTT GTAAACTCTG GGTCTCAACT 85451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGTTTG CTTCTAACTT TGAAGATGTA GATCAATGTT GTAAACTCTG GGTCTCAACT 719 ATAAAAGTAA AAGTAACATT CCCAGATTAT AGTATATCTA CATCTCATAC CTAGTTAGCA 85391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAAGTAA AAGTAACATT CCCAGATTAT AGTATATCTA CATCTCATAC CTAGTTAGCA 779 AATCAACATT GTGACATATC ATGTATGCCT GTCCTTACTT TGCATCCA-C ATTATTGAAA 85332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AATCAACATT GTGACATATC ATGTATGCCT GTCCTTACTT TGCATCCACC ATTATTGAAA 839 TTTTATGTCA TTATATATGA GAA 85309 |||||||||| ||| | | | || TTTTATGTCA TTAAAAAAAA AAA 862 hqPGS_C08HBa0235H18.1-_SGN-U329745+ (88030 87948,86274 86179,86094 85914,85809 85309) ******************************************************************************** EST sequence 75 +strand 870 n (File: SGN-U340390+) 1 GCTGGAGCTC CCCGCGGTGG CGGCCGCTCT AGAACTAGTG GATCCCCCGG GCTGCAGGAA 61 TTCGGCACCA GAGTACTTGG GATCGTAAGA TCCACAATTC GAAATAGCTA CATAATTGTT 121 ATGGGAAAAA ATTCACAATC CATTTAGGAA CTTAGTGAAT CAGGGACTTT GATCATAGCT 181 TCTACTTTTG TGCTTGAGAT ATGCTGCCAA TATTCATATT TAGATTTCGG ACTTCTATCC 241 CTTAGTGCCA AAAACACCGA TTATTTTTTT ATTATCAAGC ACATAACCCG TTGATTATTA 301 AACATTTTCT TCAAATAAAA ATGTTACATT CCAATTGAAC GAAGGCCTCC AAATATTTTG 361 TTGCCTTTTT ATAAATCATC AAAATTAGAG GTTAAACTAA ATTGTGTACA ATTGTTATCA 421 AAGGTGCGCT TGACCCTTGG AAGAGAGCTC AAAACGTGTT GAGCGCTTCG GCCTCACTTA 481 ATGTGTTCTT TATTGGTATC ATCATGGTTC GAAGGCATAC TTCCCTTGCC AATGGATCTC 541 TTCTGAAGAG TCAATACTAA ACAATTGATA TTTCTGTTTG TCTCAGTTAT CAATTTCTTT 601 GTTCATATAT TTGTCATTCG TGCTTACAAA TTATTAGTCT TGGACTAAAC ATATATATTT 661 ATATTTTTTC TCCCTTTGTG CCTTTTTTTA ATTAAAGCCC ACACTTTATT TGCGCTCAGA 721 GCCCAACAGA CCTTAGAGCT TTTTTGCGCT TTTTGCTTTG AATCCACTNG AGTAAGTGTA 781 TTACTTCTTA CTGGAAATGA AAAGAGAATG NTGCCCAGTA GCTACTCTTT AAGTAAACAA 841 TTATCTTTTG ATTTTGCCAA NTTTTTTTTT Predicted gene structure (within gDNA segment 102817 to 93638): Exon 1 99750 99721 ( 30 n); cDNA 315 344 ( 30 n); score: 0.667 Intron 1 99720 98740 ( 981 n); Pd: 0.826 (s: 0), Pa: 0.000 (s: 0) Exon 2 98739 98704 ( 36 n); cDNA 345 380 ( 36 n); score: 0.667 Intron 2 98703 97955 ( 749 n); Pd: 0.000 (s: 0), Pa: 0.261 (s: 0) Exon 3 97954 97928 ( 27 n); cDNA 381 407 ( 27 n); score: 0.593 Intron 3 97927 96443 (1485 n); Pd: 0.000 (s: 0), Pa: 0.694 (s: 0.66) Exon 4 96442 96064 ( 379 n); cDNA 408 774 ( 367 n); score: 0.737 MATCH C08HBa0235H18.1- SGN-U340390+ 0.737 472 0.543 C PGS_C08HBa0235H18.1-_SGN-U340390+ (99750 99721,98739 98704,97954 97928,96442 96064) Alignment (genomic DNA sequence = upper lines): ATCAAAATGT CTCCCTCCAA ATGCAAAGAG GTGCTATATT CCATTAGAAA TATTGCTTCG 99691 || ||||||| | ||||| || | || ATAAAAATGT TACATTCCAA TTGAACGAAG .......... .......... .......... 344 ACATTATCAT CTATGCCTGG AAATTGTGGC ATACAAGGCG AGACATATTA CTGGAGTGCT 99631 .......... .......... .......... .......... .......... .......... 344 GGTTATCCGT TTAACATGAG GCTGTATGAG AAGCTACTCC TTGGTTTATT TGACATTCTG 99571 .......... .......... .......... .......... .......... .......... 344 GAAGATGGCA AGCTCATAGA GGTTTACGTT ATATCTTTTA ACCTTTTGTG TTGGTTATTC 99511 .......... .......... .......... .......... .......... .......... 344 TGAATGTAGT GTACTTAATG TTCTCGTCAT CAGGAAGCTG ATGAAATCCT AAAGCTCATC 99451 .......... .......... .......... .......... .......... .......... 344 AAATCAACAT GGCCTTTGTT GGGAATTACC CAGAAGTTAC ATGATGTATT ATATGGATGG 99391 .......... .......... .......... .......... .......... .......... 344 GTGCTTTTTC AGCAGGTAAT TGAGCTTAAC CATGTTATTG AAGCAACCTT CTACCATCTC 99331 .......... .......... .......... .......... .......... .......... 344 CGTCCTCTCT CTCTCTCCCA GTTTTTGATG CTTTTATTAG ACACAGAATA TACGTATGCG 99271 .......... .......... .......... .......... .......... .......... 344 TGGCTAGGAA ATGAAGCTAT TATTTTCCGT CGCACAACTC ATGGGCCCAG ACATACTGAT 99211 .......... .......... .......... .......... .......... .......... 344 TTCTATCAAT GCATAACTTT AGCTTAGATT CTTCAATTGC TTCTACTGTT TGCACAAAAT 99151 .......... .......... .......... .......... .......... .......... 344 AGAACACCTA GAGTTGCACC CATGTTGCCA CTCACTTTGA AGTCTGCTTG TTATGTTAAA 99091 .......... .......... .......... .......... .......... .......... 344 AAGTTTACTG TGAAAGATGG AGAGTTATAT GCTTTACTGC AATGTGATGT AAGCTGGCTA 99031 .......... .......... .......... .......... .......... .......... 344 CTTGTGTGTT TAATCTTCCT TTAATAACTT TTTTGTTTCC TGTTCCCCTG TTTGTGATGC 98971 .......... .......... .......... .......... .......... .......... 344 AGTAGCATTC AGTTCTCAAA TTATTACATG TGTATGCTTT TGTTATGGCT TGTACCTTGC 98911 .......... .......... .......... .......... .......... .......... 344 TGCTTGGGTG CCTCACCTCC CATATGATTT TTTTCTTGGA GTATATGGAT TGTGAGGAAC 98851 .......... .......... .......... .......... .......... .......... 344 AACAGATTGG TGAATCTTTA TAGCTGGGTC GACCTATCAC ACATAAGGCC TTTCATGATA 98791 .......... .......... .......... .......... .......... .......... 344 GACTAAAGAT GTCGCCAGAT TTGCAGTTGA GTTTTTTACT TATTCTGGCA CGGTTGCACC 98731 | | || .......... .......... .......... .......... .......... .GCCTCCAAA 353 TGTTTTGTCC CTGTTTTATA AAACAGCTGA CTTTTTAAAA AATTTCTTTA ACGACAATTA 98671 | |||||| | ||||||| || || | TATTTTGTTG CCTTTTTATA AATCATC... .......... .......... .......... 380 CAAATTATTA ACCAGTTGCC GTTGTTGAAT ATTGAGAGGA AGTGTTTCTA GGGGAGTTAA 98611 .......... .......... .......... .......... .......... .......... 380 ATATTTTAAA AAAGAAAAGA AGAAGAAGAG AGATAGAGGT AGGTCTGAAA GAAGCTCTCC 98551 .......... .......... .......... .......... .......... .......... 380 TTCAAGCGTC TACCTTTTCT TTGAGGAACT GGTCCGACCA TTAAAACTTA TATTTGTCCA 98491 .......... .......... .......... .......... .......... .......... 380 CATTAATGAG GAGACAGAAC ACCTATCATA AACCTGCTGG AGCTGAGCTT GTCTTAAAGC 98431 .......... .......... .......... .......... .......... .......... 380 CGCGAATCAA CCAAGTCAAT GATAGGGAGC CTACTCTGGC TATATGATAC ATGCTTTTTC 98371 .......... .......... .......... .......... .......... .......... 380 ATTTAAAATT TATTGTTGCT AATTTTCTTG CACTTTTAGT TTTGTCTTCT CAAAACACCT 98311 .......... .......... .......... .......... .......... .......... 380 GAATATTAGC CTTCTTAATT TTGCACAGTT AAATCTAGCA TTGCTCCTCA CTTTGTGATA 98251 .......... .......... .......... .......... .......... .......... 380 ATTCAGTTGC TTGCAGTTTG CTAACAAGGA GTTACAATTT CTGTGCTTTG GTAGACATTT 98191 .......... .......... .......... .......... .......... .......... 380 TGATGCATTT AGCATTTAAA TAGTGCGAAA TTAGTTTCCT TGTAAAGTCA TTGCTATTAT 98131 .......... .......... .......... .......... .......... .......... 380 TTGTAGACTT GATAAAATTT CTGATGTATT TTCTTCTTAT TGAAGTTTCT TGGGACAGAG 98071 .......... .......... .......... .......... .......... .......... 380 GAGGCAATGC TTTTGGAGTA TGCAGTTCGT AAAATGCGGA ATATTCCGTC ATCTGAAGAT 98011 .......... .......... .......... .......... .......... .......... 380 GTCGTACAGA ATGAAAAGAA GTATTTGGAG AGTCTAGTTT GTGTAAATCA CTGCAGTGGC 97951 .......... .......... .......... .......... .......... ......AAAA 384 TCTGAGATTA GGCTAAATTT GGTGCAGTCT ATCCTTTGGT CAATTGGTTT ATGGTGCGAC 97891 | ||| ||| ||||||| || TTAGAGGTTA AACTAAATTG TGT....... .......... .......... .......... 407 AATAAGTTGC ATGATTATCA TTGGCATTTT TTTAAGGTTG TTTTCTGTAC TTGTATATTC 97831 .......... .......... .......... .......... .......... .......... 407 TTCTTATCTT GTTTCTCCGT TGTGATGTAT GACTTGTTAA TGGTTGTCTA ACATGCAAAA 97771 .......... .......... .......... .......... .......... .......... 407 TTGTGTATCT GATGAAAATT TTCTCCCTTT GTTAGAAGCC TTCTCTTTTC AAGGGGGTGT 97711 .......... .......... .......... .......... .......... .......... 407 TATCCATGGC ATTGGCAGCA GGGAATCAGA AGTTCGAAAT GTCTGGAAAC ATGGAGGTAT 97651 .......... .......... .......... .......... .......... .......... 407 TTGGTACAAA TTTATCTCTA TTAAGTGCCT TCTCTGGTGG ATGAAATAAG ACAACCATGG 97591 .......... .......... .......... .......... .......... .......... 407 AAAATATTTT GCTGGGCATC TAAATGCTAA TAGTCACTTG AGCCTGTGTG TATGATTCTC 97531 .......... .......... .......... .......... .......... .......... 407 CAGCACTAGT TCTCAAAGTG TATAACTGAA AAGACATGGC TTGACATCCT TTTAATTGGA 97471 .......... .......... .......... .......... .......... .......... 407 TTCTGTGATG TGTTTATTTG TGTACTTGGA CATTTAAGTT GGACAAGAAT CTAGAAATGC 97411 .......... .......... .......... .......... .......... .......... 407 AATATGTCCA AAACAAGCTA CTTTAGGAGG GGGTATTGTT TTTATATCGA CTTCCAAGGT 97351 .......... .......... .......... .......... .......... .......... 407 CGTATCTTCT CCCTGCACCA TTTTTGTTTT GGAAGTAATT TATAGCAAGT CTTCATTGGA 97291 .......... .......... .......... .......... .......... .......... 407 AAGACATGGC TTGACATCCT TTTAATTGGA ATCTGTAATG TGTTTATTTG TGTACTTGGA 97231 .......... .......... .......... .......... .......... .......... 407 CATTTAAGTT GGACAAGAAT CTAGAATTGC AATATGTCCA AAACAAGCTA CTTTAGGAGG 97171 .......... .......... .......... .......... .......... .......... 407 GGGTATTGTT TTTTATATCG ACTTCCAAGG TCGTATTCTT CTCGCTGCAC CATTTTTGTT 97111 .......... .......... .......... .......... .......... .......... 407 TTGAAAGTAA TTTATAGCAA GTCTTCATTG AAAAATATCT GTGCTTGCTA CCTTGCCAGA 97051 .......... .......... .......... .......... .......... .......... 407 AAAAGCTGTC CTCCTTATCT TCATCAAAAA ACACAACGCT CAATTTTTTT GGGCAAGCAG 96991 .......... .......... .......... .......... .......... .......... 407 CTCATCTTTC CAATCTCCCA ACTATTGGAA CTTCTTCTGA AAAGAAAATT CCATTTCTTC 96931 .......... .......... .......... .......... .......... .......... 407 AGAGAAGCAA CTTGTTATGG TATAAGTATT GTAGATAACT AGATTGTATA AATCTGGGAA 96871 .......... .......... .......... .......... .......... .......... 407 TATGGCCCTT GAGGCAATGT TTTCGAACCA TTTATTCGGT CAAAGTTTAA TCTTTTTTCC 96811 .......... .......... .......... .......... .......... .......... 407 ATTTCCAATC TTTAGGCTTG TACGTGAGTT AAATAGTTAA ATTCATCCCA GCAATTTCTA 96751 .......... .......... .......... .......... .......... .......... 407 ATTTGCCTCT GTATGGCTAT CCTGTAGGGA GCTTTTTCCA GTTTAATGCC CCAGGGAGAT 96691 .......... .......... .......... .......... .......... .......... 407 TCCATCCTAT ATTTTACGTT CACAACTTTT TTCCAAAGTT CTTCCTTTCC ATCACCAGAT 96631 .......... .......... .......... .......... .......... .......... 407 CTCCAAGGCA GTTTGGAACC ATCAAATCAA CTCATACACT ATGTGGAATC GGCAAACTGC 96571 .......... .......... .......... .......... .......... .......... 407 ACCCAGATTT TAGAACCTAC CAGCAATTCT TACCTGTCAG TCTGATTATT TAACAAACAG 96511 .......... .......... .......... .......... .......... .......... 407 AAAATACTAT GGCCCAACTT ATTAATGTCT CCAAGTAGGA TGGGAAAATA TTAACAAAAT 96451 .......... .......... .......... .......... .......... .......... 407 TGACTTAGAT TAGTGTTGTC AAAGGCACAC TTAAGCCCTA AAGCAGGGAT CAAAATGTGT 96391 | | |||| || ||||| | | || | || | | || | | ||||| |||| ........AC AATTGTTATC AAAGGTGCGC TTGACCCTTG GAAGAGAGCT CAAAACGTGT 459 TGAGTGTTTC -GCCTAACTA AATGTGCGCT TCGATGTCGT CATCAAGGTT CTAAGGCATA 96332 |||| | ||| |||| ||| |||||| || | || | ||||| |||| | |||||||| TGAGCGCTTC GGCCTCACTT AATGTGTTCT TTATTGGTAT CATCATGGTT CGAAGGCATA 519 CTTTTCCTTT CTAATGAACC TTTTATGGAA CGGCAACATC CAACAATTGG TATTTCGCTT 96272 | || |||| | |||| | | | || || | | ||| | |||||||| |||||| || C-TTCCCTTG CCAATGGATC TCTTCTGAAG AGTCAATACT AAACAATTGA TATTTCTGTT 578 TATCATATTT TTTTTTCTAT TCTTTTTGTT CATATATTTG TCATTCTTGC TTA-TAATAT 96213 | || | || || || | | |||||| |||||||||| |||||| ||| ||| ||| TGTC----TC AGTTATCAAT T-TCTTTGTT CATATATTTG TCATTCGTGC TTACAAATTA 633 TTAGTCTTGG ACTAAACATA TTTATTTGTA TTTTTTCTCC CTTTGCGCC- TTTTTAAAAT 96154 |||||||||| |||||||||| | ||||| || |||||||||| ||||| ||| ||||| || | TTAGTCTTGG ACTAAACATA TATATTTATA TTTTTTCTCC CTTTGTGCCT TTTTTTAATT 693 AAAGCCCACA TTTTATTAGC ACTTTGCGCT TAAAGCTCCA TCAAACCTTA GAGCTTTATT 96094 |||||||||| | || | |||||||| | ||| ||| || |||||| ||||||| || AAAGCCCACA --CT-TT--- A-TTTGCGCT CAGAGC-CCA ACAGACCTTA GAGCTTTTTT 745 GCGCTTTTTG CTTTTGACAA CACTTAACTA 96064 |||||||||| | ||||| |||| | || GCGCTTTTTG C-TTTGAATC CACTNGAGTA 774 hqPGS_C08HBa0235H18.1-_SGN-U340390+ (96442 96064) ******************************************************************************** EST sequence 70 +strand 756 n (File: SGN-U326156+) 1 CAAAATAAAC CAAAAAAAAG TNCTATTAAG TAAGGCTGTT TAAAATCGAA TCAAAATCGA 61 TAAGTTGAAT CGATAAAAAA GTTATTGGTT TATAGTATTG GGTTATTGGT TTAGTGATTT 121 TGATAATGGT TTTGATTTTT TTTTGTTATC GGGTTATCGA TTCTTAACGG TTTAAAGTTT 181 TTTTTTTTAA CGGATTAACC GATAACCCGA TAGTAAATTA AATATTTATA TTTATACCAT 241 TTTTGTATAT AAAGTTCTCG ACTTGGAGTT TAATTTCCTA CTTTTATTTT TGGTTGTCTC 301 AAACACTTGA TTATTCTACG ATGTAAAAGT GCTTGCTTTT GAGCAAGATG TAACTTGTGA 361 ACTCAAGTGC ATGGTTTATT TGGTTTGTCA CCTTGTTTCT ACGTGATTTT CAATATTTTT 421 TCTTTTGGGT CAAATCTTAA CGGTTAAACC GATAACCGAA CAGATAACGA TCAAAAATCG 481 ATAAACCAAT AACCGATAAG CCAATATCTT AATGGTTCTA TAATGGTTTA GCATCACTAC 541 AAACCGATAA CTAATAAGCC AACCCGATAA ACTTTAAAAT CGAACCGAAC CGGCCGATAC 601 ACAGCCCTAG TATGACTTGT GCTTGTTTTA CATTGTGGTG CCTCAGTAGG GAGGTGGCTC 661 CTTTCATCAA TTTATGATTT TCACTATCAA GTCCGTTTGG TACTTCTATC AGTCGTATAA 721 AGTTAGGAAG ACATGTCTCT TGGATCTATA ATATAT Predicted gene structure (within gDNA segment 108061 to 101485): Exon 1 107892 107887 ( 6 n); cDNA 216 221 ( 6 n); score: 0.833 Intron 1 107886 106936 ( 951 n); Pd: 0.524 (s: 0), Pa: 0.000 (s: 0) Exon 2 106935 106909 ( 27 n); cDNA 222 247 ( 26 n); score: 0.722 Intron 2 106908 106440 ( 469 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.57) Exon 3 106439 106090 ( 350 n); cDNA 248 611 ( 364 n); score: 0.729 Intron 3 106089 104227 (1863 n); Pd: 0.000 (s: 0.72), Pa: 0.247 (s: 0) Exon 4 104226 104219 ( 8 n); cDNA 612 618 ( 7 n); score: 0.625 Intron 4 104218 103800 ( 419 n); Pd: 0.660 (s: 0), Pa: 0.999 (s: 0) Exon 5 103799 103777 ( 23 n); cDNA 619 641 ( 23 n); score: 0.500 Intron 5 103776 102197 (1580 n); Pd: 0.000 (s: 0), Pa: 0.120 (s: 0) Exon 6 102196 102192 ( 5 n); cDNA 642 646 ( 5 n); score: 1.000 MATCH C08HBa0235H18.1- SGN-U326156+ 0.729 419 0.554 C PGS_C08HBa0235H18.1-_SGN-U326156+ (107892 107887,106935 106909,106439 106090,104226 104219,103799 103777,102196 102192) Alignment (genomic DNA sequence = upper lines): AAATAAGCAA CAATGCTCTA TCTGCAAAAT ACTTCAACCC CAACAGTCAA AGTTTCTTAT 107833 || ||| AATTAA.... .......... .......... .......... .......... .......... 221 TTTTCACAAA TGGGGCAACA AAACAAGAGA AACAGAAGCA AATTGAGAAG CACAATTAAA 107773 .......... .......... .......... .......... .......... .......... 221 ATTTGGAAAG CTGGGTGAAC AAATCTCAAC ACTAAACCTC AAACCCAGAA AATAAAGCTT 107713 .......... .......... .......... .......... .......... .......... 221 CTTATTACTC ATACATTGAA CAAAAAATCA GTCCTTTTTG TAACAGAAAT ACTTAACAAT 107653 .......... .......... .......... .......... .......... .......... 221 TCACAGTAGC TGTGTTTACT AATCTCAACA CTAACCCTCA AACCTAGAAA TAAAAGTTCC 107593 .......... .......... .......... .......... .......... .......... 221 CCATCATCCA CAAAATTGCA CAAAAAGTTA AGTCTTTTTA TGTAACAGAA ATACTATATA 107533 .......... .......... .......... .......... .......... .......... 221 TGACAAATAC CTCAACCCCA TAAGCTAAAA TTTCTTATTT TTTCACAAAT GGGGCAACAA 107473 .......... .......... .......... .......... .......... .......... 221 ATAATGACAA AGTAGCAAAA TTGGGGAAAT TTCTTACGGC TAAAATAAGA TTGGGCATGT 107413 .......... .......... .......... .......... .......... .......... 221 TTCCATCACG AGCAATAACT TGAAGCCTGG CAACTGCATC TTCATTGCCG ACGATGTCGG 107353 .......... .......... .......... .......... .......... .......... 221 ATACTTTGGT GGGTCGAAAC TTCTCAACCC AAGGGATTTC TGGTCCAGAT GATGTCGAAG 107293 .......... .......... .......... .......... .......... .......... 221 AAGACGATGC CATTTCTCAA CTCCAAGAGA AAAAAAAATA AGCCCTTCCT AAAACCCTCC 107233 .......... .......... .......... .......... .......... .......... 221 TATTGCAACT TCAAATTGGA GGGAACTAGG CCAATAGCAA AATGGTAAAT ACTTGGAAGT 107173 .......... .......... .......... .......... .......... .......... 221 ATTTGTCCTA TTTAATTGCT ATGGTTTGAT CGTAAATTTT AAATATTAAA ATATAAAAAT 107113 .......... .......... .......... .......... .......... .......... 221 TATAAAATAA AATTTGTAAA AAAGAGAGAA ATAAACCTCT TTTTTTATCA AACTCGTAAT 107053 .......... .......... .......... .......... .......... .......... 221 TCAAATAATA TTATTCAAAT TGATGTAAAA AAAACAAATT TTTGAACTTT GAAAAATATG 106993 .......... .......... .......... .......... .......... .......... 221 GTCCTATCTA AGGCATTATT AGTTGTTACC TAAAGTTTTT TAATTATTTA TTTTTTTATT 106933 || .......... .......... .......... .......... .......... .......ATA 224 TTTAATTATT TAT-CCATTT TAATAATGCA GAAAATGATT GAATTTTTTC CCCTTATTAC 106874 ||| || ||| ||| |||||| | || TTT-AT-ATT TATACCATTT TTGTA..... .......... .......... .......... 247 ATCATACTTT TTCTTTTTGA AAATATTTAT CCTATTATAT TTATCGAAAG TCAATTTGCA 106814 .......... .......... .......... .......... .......... .......... 247 ATTAAATGTA AATGTAAAAA ATTAAAATAA ATAAAGAATA AAAATGGTCA ATTAAGGTAA 106754 .......... .......... .......... .......... .......... .......... 247 AAATACAAGA GTTATTGTAG GCATGGACTT TCTCTTTACC TTTGTGTTTG TCTTTGCTTG 106694 .......... .......... .......... .......... .......... .......... 247 GAGTGGAATA TACTATGTAA ACTTATTTAT AAGTTATTAT TATTAAATCA ATTCAACAAA 106634 .......... .......... .......... .......... .......... .......... 247 ATAGAAAATT AGGGCGGTTT AAAATGAAAC AGAAATTGAT AGTTTCAATT GAAAATATAT 106574 .......... .......... .......... .......... .......... .......... 247 TATTGGTTTA TTATTATTGG ATTATCGATT TAGCGGTTTT GATTTTTTTT TATTATCAGG 106514 .......... .......... .......... .......... .......... .......... 247 TTATTGGTTC TTAACAGTTT GAGATTTTAA TATTGACGGG TTAATCGATA ACCCAAAACA 106454 .......... .......... .......... .......... .......... .......... 247 TCTATACTAT TTTTTATAAA GACCTTAATT TAGAGTTTGA TTTCCTA-TA TT-TATTT-G 106397 |||||| | || | | | |||||| | ||||||| | || | ||| | .......... ....TATAAA GTTCTCGACT TGGAGTTTAA TTTCCTACTT TTATTTTTGG 293 -CGTCTCAAG CACTTGGTAA TTCTACACTG TAAAAATGTT TGCTTTTGAG CAAGATGTAA 106338 ||||||| |||||| | | |||||| || ||||| || | |||||||||| |||||||||| TTGTCTCAAA CACTTGATTA TTCTACGATG TAAAAGTGCT TGCTTTTGAG CAAGATGTAA 353 CTTGTGAACT CGTTTGCATG GTTCATTTGG TTTGTCACCT TGTATCTAAG TGATTTT--- 106281 |||||||||| | |||||| ||| |||||| |||||||||| ||| |||| | ||||||| CTTGTGAACT CAAGTGCATG GTTTATTTGG TTTGTCACCT TGTTTCTACG TGATTTTCAA 413 TATTTTAT-T TTT-GATTAA ATCTTAGCGG TTAAATCGAT AA-CGATAAA AAATCGA-C- 106226 |||||| | | ||| | | || |||||| ||| ||||| |||| || ||| | | | ||| | TATTTTTTCT TTTGGGTCAA ATCTTAACGG TTAAACCGAT AACCGAACAG ATAACGATCA 473 -AAATAAAT- AACCAATAAT TAATAAGTCA ATATCTCAAT GGTTATATAA CGATTTAACA 106168 |||| || ||||||||| ||||| || |||||| ||| |||| ||||| | |||| || AAAATCGATA AACCAATAAC CGATAAGCCA ATATCTTAAT GGTTCTATAA TGGTTTAGCA 533 TCACTACAAA TCGATAACCA ATAAGCCAAA CTGATAAACT TTAAAATCGA ACCAAATCGA 106108 |||||||||| ||||||| | ||||||||| | |||||||| |||||||||| ||| || || TCACTACAAA CCGATAACTA ATAAGCCAAC CCGATAAACT TTAAAATCGA ACCGAACCGG 593 TCATAACAGA CACTTATTGT CCTAACTAAT TAAGAATAAA TAATTCTAAC ATATTGTTGG 106048 | ||| | | || | CCGATACACA GCCCTAGT.. .......... .......... .......... .......... 611 TTATCTTAAA AATAAAAATA TAATTGTTAA TTTCCAATAA CTCAAGGACT AATGTGTTAT 105988 .......... .......... .......... .......... .......... .......... 611 TATCTCTTCT TTTTTTTTCT TCCCTTTAAA TAAAAACAAC AATCTTTGAC CAGGTAAATT 105928 .......... .......... .......... .......... .......... .......... 611 AAAAAATAAA ATAAAAATAA AGAAAAAAAG AGACGACATA AACTGATCAA CAAAAGCGGA 105868 .......... .......... .......... .......... .......... .......... 611 AACAAGAAAA AACAGACGAC TACTTTTTCC AGCTTTGTGC CATTTCTTTC GCCTCTTTTT 105808 .......... .......... .......... .......... .......... .......... 611 CACCACCTTT CACCTTCTCG CCGGGAAACG CCGTACGCGG TGGCTATTTT CACCGGCCGG 105748 .......... .......... .......... .......... .......... .......... 611 AATCGGAAGA GATTCCGATT ATTCGAATGC TCAAAGGGCT TTTTTGTCTT CTAATTCACC 105688 .......... .......... .......... .......... .......... .......... 611 GGCTCATTTT TTTCCCGGCG GCGGGAAATT TGTTTAATTT TAACGGTGAT AAATGGAGAC 105628 .......... .......... .......... .......... .......... .......... 611 AAATTCTCTT CTACAACGGT ATCGTAACGA TCGTAGGAAT CTTCTAGAGT TTCTTTTATC 105568 .......... .......... .......... .......... .......... .......... 611 ATGTGGATTA ATTAAAGAAA TTCGAACTCC TTCTGGTCCA ACTTTATCCC TATCTAACAT 105508 .......... .......... .......... .......... .......... .......... 611 CAATCTCGAT GTTATTAGTG CTGATTATGT TCTAGAATGT GTACAATCTG GTAAGTTTTT 105448 .......... .......... .......... .......... .......... .......... 611 CTGCATTTTG AAAAGTATTT AACATAAAAC ATAAATATGT TTCATTAGGA TTGTTTAAAT 105388 .......... .......... .......... .......... .......... .......... 611 TAGTATTCTT GTATAAGTTT TGGTATTGAT TTCTTAGCTT TATTGAAGAA GAACTACATG 105328 .......... .......... .......... .......... .......... .......... 611 AAAGTACTAA AAATTGAAAC TTTATCCTGT ACTTAGAAAT AATTTTGAAT GAAAATGATA 105268 .......... .......... .......... .......... .......... .......... 611 ATGGGTGTTG GTCAATGAAG TGGTTGAGTG CATGAGGTCT CATGTTCAAA TACCAGCAGA 105208 .......... .......... .......... .......... .......... .......... 611 GACAGAGTTA TGTGGTACAT GTTGCTGGTG TGAGGTGAAA GGTATCTCGT GGAATTAGTT 105148 .......... .......... .......... .......... .......... .......... 611 GAGGTGCATG CAAGCTGGCA AAGAAAAACT TAGTTTGTGC TATTTTCCTT TAAGTCCGTT 105088 .......... .......... .......... .......... .......... .......... 611 TTGAAAAGAA TATCTCTTTC CTTTTTTTGT GAACTCTTTA GTTGTTAAGG GCATGCTGGT 105028 .......... .......... .......... .......... .......... .......... 611 GCATTCTACC TATATATCTT TAGTCTTATT TACTTTCTAA AGTTCTGTGT CAAGTCAGAA 104968 .......... .......... .......... .......... .......... .......... 611 CCAGGCAAAC AAAGTTGAAA TAGAGGGAGT AGTTAAGGAG GAGTGGTAAT TTAACTTATA 104908 .......... .......... .......... .......... .......... .......... 611 CTGCACTGTT TTTTTGTATG GTTTTCTGTG TTATTTCTCT ATGGAATGGT GTTTTCGTGT 104848 .......... .......... .......... .......... .......... .......... 611 GTTCCTTTTG TTTGTTTACC TTCAAAGGCT GAAGCTTTTG GTTTCGTTGT CATTGTTTTG 104788 .......... .......... .......... .......... .......... .......... 611 TATGATTAGG TGGGGTGCTG GATGTTTCTT TAGCAGCTAA GAAGTATCAC GATGAACGTC 104728 .......... .......... .......... .......... .......... .......... 611 AACATCCAAA AACAGTAAGG AATACCTTTA ATAATATTAA TAAAAAATTC TTTGTTGTCT 104668 .......... .......... .......... .......... .......... .......... 611 TCAATTGATC ACAGCTATAG TGGGGTGAGG AAGTTATAAT CCACTAATGT GCATATCCAT 104608 .......... .......... .......... .......... .......... .......... 611 GGACGGAGAT TATGTTGTGA TTTCGCTTCA TTTTGTTGAG GGAAGTAAAC CAAAGTATTA 104548 .......... .......... .......... .......... .......... .......... 611 GCAATAGTAA CTGTTGCTTC TTTTGTCATG AAATTATCTA GTAGAAGTTG AAAAGTTTAT 104488 .......... .......... .......... .......... .......... .......... 611 ACCTGCATCA ATATTGGAGA TGCAACTACC TCCTGCTTTA GAAATTTGAA CTATGCATCT 104428 .......... .......... .......... .......... .......... .......... 611 AAGAAAGAAT AAGAATTTGA TTAACTACAT GTTCTATATA CATCCAATTT ATATATTTTG 104368 .......... .......... .......... .......... .......... .......... 611 GATCCCTCAA CTCTTTTTTT TGTTTTCCTT TGTTCTTTTC TCCATTTAGT ATACCAGTCA 104308 .......... .......... .......... .......... .......... .......... 611 CTTTAGGCAA ATTTATGGAG ATCAGATCTG TAAGCTTATT TTGACTTGTG AGTGAACCAC 104248 .......... .......... .......... .......... .......... .......... 611 ATTCATCTTT GGAAACTGAA GATAGCCATG CACAAATGAT CAAATTATTG CGCACCAACT 104188 || | | | .......... .......... .AT-GACTT. .......... .......... .......... 618 GCAATACTCT TTCTTAGTCT AAGTTTGTAT GACCAATCTT CTTTTAGGAT ATGACGCTAA 104128 .......... .......... .......... .......... .......... .......... 618 GCAGCATATA TTGAAACTTG ATTTAGTAAT AGTGTTGCTT TTCCATTATT TTATTTTTCC 104068 .......... .......... .......... .......... .......... .......... 618 TTTTTTAATC TTTTCTGGAT TGAATGCCCA AGTAACCTAA CTCTAAGAAA CTTCCCCTAA 104008 .......... .......... .......... .......... .......... .......... 618 CTCTGATCTG TGTTCTATGT GTTAATTCTA GATGTATAAT AATATATTTC ATTTGTCTTT 103948 .......... .......... .......... .......... .......... .......... 618 GAATCTTTTA AATTGAAGAA TGAATCATTG TTTGTGAAAG AAACTGCAAA ATGATTTGCC 103888 .......... .......... .......... .......... .......... .......... 618 TCATCTCATG GAGGAGTAGC ATTTTGATGT TTCTACTTTT AAAATGGAAT AAATGTTTAA 103828 .......... .......... .......... .......... .......... .......... 618 TATGTTATTC TTGTAATGCT CTCTGCAGAT GC-AGTTGCA CACAGGCGAT GCGTATTTTC 103769 | || ||| | || | | | || .......... .......... ........GT GCTTGTTTTA CA-TTGTGGT GC........ 641 TTGTTACAGA TTCAGAATCA GCTGGCTCCC ACCCACAGCG TGTGCCACCT TCTATTATGA 103709 .......... .......... .......... .......... .......... .......... 641 AGAATCACTC CAATAATAAT GGATCATGCC GTTCTGATTT GACAGATTTC TCTCCTTACA 103649 .......... .......... .......... .......... .......... .......... 641 ATGATGATTA TGGTGTTGAC AGTAAAACCG CAGGAACTTC AGGGTCATTT ACCATTAAGC 103589 .......... .......... .......... .......... .......... .......... 641 AAACTGATCT TCCATCAATA GGAATACCTG CACTGAAAAC AGGTAGTGTA TGCTTATTAT 103529 .......... .......... .......... .......... .......... .......... 641 CATGATACAA AAAAGAAGAA TGACATACGA AACTGTTTAG GTCCTGTAGC GGGTGGAAGA 103469 .......... .......... .......... .......... .......... .......... 641 ATTATTGGTC TGTATCTTGA CTGTATATGT TCACCTTTGG AGTAAACTGA TACAAAGTTT 103409 .......... .......... .......... .......... .......... .......... 641 TAGGTCTCCT GAAGGGCTAC TGGACGATGA TTTGCGTGAA TCTGCCTATG AAGTATTCCT 103349 .......... .......... .......... .......... .......... .......... 641 TGCTTGCATG ATCTGCTCTG GGTAAAACTT CTTAACTATG ATTCTCACCA TGTATTTGTA 103289 .......... .......... .......... .......... .......... .......... 641 GTTGAGCGTC AATTTATGAT TATTTGAAGG AACTAATGAA AATGCACTAA TTACATATTT 103229 .......... .......... .......... .......... .......... .......... 641 TGCGTTCTGG TGGCCATTCA TTTTCTTTCA CGTCTTAGCA CTACATTCTC TTTCACTCTT 103169 .......... .......... .......... .......... .......... .......... 641 TTAAAACTTA AATTTTTACA TTTAGGCTTG AGGTTCGCTT GGCTGAGTGT AAAAAGAAAG 103109 .......... .......... .......... .......... .......... .......... 641 AGAAGAGTCC TAGATTTCTT TCTGGGCTGA AGAGAAGAGA GAAAAGACAT TCACGGTCCC 103049 .......... .......... .......... .......... .......... .......... 641 TGTCTGGGTC CGTGCCTTTC GATAGAAATG CTGAGCTTAT TGAAACTTTC AGGACACAAA 102989 .......... .......... .......... .......... .......... .......... 641 TGCAGGCAAG ATATCATTAT CTTTGTACGT TTTGAATTTT ACATTTGCTG CTGACATACC 102929 .......... .......... .......... .......... .......... .......... 641 TTTGCAATTT GAAGCCAGTT AAATATTCTT ATTTTGGGTG ATTCTTTCAG TGAGTATTTT 102869 .......... .......... .......... .......... .......... .......... 641 CTAAAACACC CACAAAAATG GAAGTGAAAA ATATACAAGA TTCTTAGCTA TAAAATAAAG 102809 .......... .......... .......... .......... .......... .......... 641 TTGCGTGAAA GTTGGTGCAT TCCGTGGTGC TCTTGAAGAA GTAATATTTT TTTTGGAAGA 102749 .......... .......... .......... .......... .......... .......... 641 ATGGCCTAGA AGATGCTGAC CTGTCTGAGA AATAAGTGGC CAGGATGACA TATTTGTTCT 102689 .......... .......... .......... .......... .......... .......... 641 TTACCTAATT GCTTCTTGTG GCGTCGCATG CATGTGTGAA GAACTGCAAA CAAAATGCAC 102629 .......... .......... .......... .......... .......... .......... 641 AATTGCATTT AATAGAGCAA TCTTGCAGTT TGTTCAACCA CTATGTGCCA TTGCTTTTGT 102569 .......... .......... .......... .......... .......... .......... 641 CCCCAACTAT TATAGACCAG TTTACTAATC CCCATAACTG TATATGAATA TAAATATGAA 102509 .......... .......... .......... .......... .......... .......... 641 TATGCTAGAG GGATGGCATG CTTCATATTT AAGAGACATC AATAATTCCT GAAGTCAAGT 102449 .......... .......... .......... .......... .......... .......... 641 AGTTTAGCTT TTTCTCCTCT TAGAACTGAA ATCAAGTGGT TTGACTGCGG GCTCTCGGGG 102389 .......... .......... .......... .......... .......... .......... 641 AAATTGAGGT CTTTGCTGGT CTGCATTGAT GAGTTTGAGG TAATGAGATG GGGTGGTGGT 102329 .......... .......... .......... .......... .......... .......... 641 ATTATCCTGT TAATCAAAGT TTAATTTACG AGATCTAGGC ATGGTGATGA CAATTGAAAT 102269 .......... .......... .......... .......... .......... .......... 641 CAAGTCAAGA AAATCTTTAA ATTCTCAAAA GGCTGTAATT AATCTAAATT AGGAATGACA 102209 .......... .......... .......... .......... .......... .......... 641 ATTTTCGTTC AGCTCAG 102192 ||||| .......... ..CTCAG 646 hqPGS_C08HBa0235H18.1-_SGN-U326156+ (106935 106909,106439 106090) ******************************************************************************** EST sequence 30 -strand 1310 n (File: SGN-U319007-) 1 TTTTTTTTTT TTTTTTTTTT AAGGTCCTTG TCTAACATGT TAATTCATGG AGTAGAGTCA 61 AAATGCTGCC TTTACACATT TGTAGAATTG AAATGCATAA TGGTTCAACA ATCATTTTCC 121 TCATTGCAGT AACAATTTTG CAATTCTACA GGCTAACACT TGATATAAAA TGCTAGCTAT 181 TTTCAAGAGA AGCTAGGAAA ACGCGATAAA ATGGAAGACC ATCGAGGACT CATCTCAGTT 241 GATTAGGACT TCAATGCCTG TCTCATCATG AAGCCTTAGC TGTTTCTCGA ACCAATGATA 301 GTTTAGCCAG CAGACCACAC ATTTGGAGAT ATGAACCGAC CCCATCGCAG ATCCTCATGT 361 GTGCGAAACC AGTTTCCTTC AAGAATTCCA GCTTTACATA TTCTGCCATA TCGTAGTTCT 421 TTATAATTCG GAAGAGGGTT GTGATGATGT CAGTGGGGGA ATATCCCAGG TCATACAGTG 481 CCTTTAGACC AGCACATGCA TCATCAAATT TTCCTTCGAG GACATTCCGC ACCATATTCT 541 TCACATGCAA TGGATGAGGT TGGTCACAAA CCTTGAAAAC ATTCTCTTGG TTGACAAAAC 601 CAAATCCACT ATGTGTTGCT TGTAAGTTAT TTAAGCCCTG TCTCATGTCT CCATCAGCAG 661 TAAATATAAT AGCTTCAAGG CCTTCAGGTA CATAAGCAAC CTTTTCTGCT GCAACTACAG 721 CCATAAGGCG TCCAAGGATC TCTTGGTCAG ATAATCTTGC AAATCGAACC AGGGCACATC 781 TACTTTGAAT AGGCTCGATA ATCTTCGAAG AAGTATTGCA GGCAAGAGCA AAGCGAGTGG 841 AGTTCGAATA TATTTCCATT GTCCTCCTCA GTGCTTGCTG AGCTCCAGAT GTCATGCTGT 901 CAGCCTCGTC CAAAATAATT ATTTTGTGCC GACCAGGGGG TAGAGTAACT TTCTTCTGAG 961 CAAACATCTT GATTTTGTTT CTAACAACAT CGATGCCCCT ATCATCTGAT GCATTTAGCT 1021 CCAACACAGC CTCCTTATAG TTTGGTCCCA AAAGCTCATG AGCAAGAGCC AATATACTAG 1081 TGGTTTTGCC AGTACCCGGA GGACCGGCTA AAATAAGATT GGGCATGTTT CCATCACGAG 1141 CAATAACTTG AAGCCTGGCA ACTGCATCTT CATTGCCGAC GATGTCGGAT ACTTTGGTGG 1201 GTCGAAACTT CTCAACCCAA GGGATTTCTG GTCCAGATGA TGTCGAAGAA GACGATGCCA 1261 TTTCTCAACT CCAAGAGAAA AAAAAATAAG CCCTTCCTAA AACCCTCCTA Predicted gene structure (within gDNA segment 108061 to 106631): Exon 1 107435 107231 ( 205 n); cDNA 1106 1310 ( 205 n); score: 1.000 PPA cDNA 20 1 MATCH C08HBa0235H18.1- SGN-U319007- 1.000 205 0.156 C PGS_C08HBa0235H18.1-_SGN-U319007- (107435 107231) Alignment (genomic DNA sequence = upper lines): GGCTAAAATA AGATTGGGCA TGTTTCCATC ACGAGCAATA ACTTGAAGCC TGGCAACTGC 107376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAAAATA AGATTGGGCA TGTTTCCATC ACGAGCAATA ACTTGAAGCC TGGCAACTGC 1165 ATCTTCATTG CCGACGATGT CGGATACTTT GGTGGGTCGA AACTTCTCAA CCCAAGGGAT 107316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTCATTG CCGACGATGT CGGATACTTT GGTGGGTCGA AACTTCTCAA CCCAAGGGAT 1225 TTCTGGTCCA GATGATGTCG AAGAAGACGA TGCCATTTCT CAACTCCAAG AGAAAAAAAA 107256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGTCCA GATGATGTCG AAGAAGACGA TGCCATTTCT CAACTCCAAG AGAAAAAAAA 1285 ATAAGCCCTT CCTAAAACCC TCCTA 107231 |||||||||| |||||||||| ||||| ATAAGCCCTT CCTAAAACCC TCCTA 1310 hqPGS_C08HBa0235H18.1-_SGN-U319007- (107435 107231) Total number of EST alignments reported: 73 ________________________________________________________________________________ Predicted gene locations (22) in segment 1 to 108061: PGL 1 (- strand): 3114 389 AGS-1 (3114 2967,2474 2409,2290 2164,1008 894,725 389) SCR (e 1.000 d 0.999 a 0.999,e 1.000 d 0.991 a 0.989,e 1.000 d 0.998 a 0.997,e 1.000 d 0.999 a 1.000,e 1.000) Exon 1 3114 2967 ( 148 n); score: 1.000 Intron 1 2966 2475 ( 492 n); Pd: 0.999 Pa: 0.999 Exon 2 2474 2409 ( 66 n); score: 1.000 Intron 2 2408 2291 ( 118 n); Pd: 0.991 Pa: 0.989 Exon 3 2290 2164 ( 127 n); score: 1.000 Intron 3 2163 1009 (1155 n); Pd: 0.998 Pa: 0.997 Exon 4 1008 894 ( 115 n); score: 1.000 Intron 4 893 726 ( 168 n); Pd: 0.999 Pa: 1.000 Exon 5 725 389 ( 337 n); score: 1.000 PGS (3114 2967,2474 2409,2290 2164,1008 894,725 389) SGN-U319906+ 3-phase translation of AGS-1 (-strand): . . . . . . 3114 AAAAGAAAACGATCTCTGTCCGAAAATTCGTGCGAGAATCTGTTTTTTTTTCCTGGGAAT K R K R S L S E N S C E N L F F F P G N K E N D L C P K I R A R I C F F F L G I K K T I S V R K F V R E S V F F S W E . . . . . . 3054 CTGCTAAGAGTTTGATTGAAAATGGTACGAGGAAAACTTGTAGTTCAACTTGTTGGAGCT L L R V - L K M V R G K L V V Q L V G A C - E F D - K W Y E E N L - F N L L E L S A K S L I E N G T R K T C S S T C W S . . . : . . . 2994 AAAGGCCTTGAAAACACTGATTTTCTCA : ATGATATGGATCCATATGTGATCTTAACTTAT K G L E N T D F L : N D M D P Y V I L T Y K A L K T L I F S : M I W I H M - S - L I - R P - K H - F S Q : - Y G S I C D L N L . . . . : . . 2442 AGATCTCAGGAGAAAAAGAGTACTGTTGCATCAG : GGAAGGGATGTGAACCAGAATGGAAT R S Q E K K S T V A S : G K G C E P E W N D L R R K R V L L H Q : G R D V N Q N G M - I S G E K E Y C C I R : E G M - T R M E . . . . . . 2264 GAAACATTTGTTTTCTCCATTTCTGAGGATGCTGAAGAACTCTTCTTGAAGATAATGGAC E T F V F S I S E D A E E L F L K I M D K H L F S P F L R M L K N S S - R - W T - N I C F L H F - G C - R T L L E D N G . . . . . : . 2204 AGTGATTCTATCGGCGAGGACGATATTGTTGGGGAAGCTAA : GATACCAATTGAACCAGTT S D S I G E D D I V G E A K : I P I E P V V I L S A R T I L L G K L : R Y Q L N Q F Q - F Y R R G R Y C W G S - : D T N - T S . . . . . . 989 TTTTCAGAAGGGAGCATCCCAATAACATGTTATAATGTTGTTAAAGATGAGGAATATTGT F S E G S I P I T C Y N V V K D E E Y C F Q K G A S Q - H V I M L L K M R N I V F F R R E H P N N M L - C C - R - G I L . . . . : . . 929 GGAGAAATTAAAGTTGGTCTCACCTTTACTCCTGAG : GAATATTCTGAGAGGGAGTATGAA G E I K V G L T F T P E : E Y S E R E Y E E K L K L V S P L L L R : N I L R G S M K W R N - S W S H L Y S - : G I F - E G V - . . . . . . 701 GAAGAGAACCTTGGTGGATGGAAAGAGTCTTCTTATTGATGTGAAGCATTACTCGACTGA E E N L G G W K E S S Y - C E A L L D - K R T L V D G K S L L I D V K H Y S T D R R E P W W M E R V F L L M - S I T R L . . . . . . 641 TCAATTTGTTCTTGCTTAAATTATGAACTTATCTTACCCGTTATAACATTTTCAAGTGTT S I C S C L N Y E L I L P V I T F S S V Q F V L A - I M N L S Y P L - H F Q V L I N L F L L K L - T Y L T R Y N I F K C . . . . . . 581 AAAAGTGTGGATTTCATATAGTAAAAAAGAAAAGAGCTATTTTGAGTCTATACGGGTTAC K S V D F I - - K R K E L F - V Y T G Y K V W I S Y S K K E K S Y F E S I R V T - K C G F H I V K K K R A I L S L Y G L . . . . . . 521 TGTAATAAAAATGTTGGGATTTTCTTTTCATTTTTCAAGTTAAATTATTTTATCATATGC C N K N V G I F F S F F K L N Y F I I C V I K M L G F S F H F S S - I I L S Y A L - - K C W D F L F I F Q V K L F Y H M . . . . . . 461 TACAATGTAAGGTTTGTTATTATGCAGAACAACAATGTCAAGTTATGAGATAATCAAGTC Y N V R F V I M Q N N N V K L - D N Q V T M - G L L L C R T T M S S Y E I I K S L Q C K V C Y Y A E Q Q C Q V M R - S S . . 401 AAATATCTAGAAA K Y L E N I - K Q I S R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-1_AGS-1_PPS_1 (3039 2967,2474 2409,2290 2164,1008 894,725 663) (frame '1'; 441 bp, 147 residues) 1 LKMVRGKLVV QLVGAKGLEN TDFLNDMDPY VILTYRSQEK KSTVASGKGC EPEWNETFVF 61 SISEDAEELF LKIMDSDSIG EDDIVGEAKI PIEPVFSEGS IPITCYNVVK DEEYCGEIKV 121 GLTFTPEEYS EREYEEENLG GWKESSY- PGL 2 (+ strand): 3611 3724 AGS-1 (3611 3724) SCR (e 0.947) Exon 1 3611 3724 ( 114 n); score: 0.947 PGS (3611 3724) SGN-U345822- 3-phase translation of AGS-1 (+strand): . . . . . . 3611 GCTAATTCAGCAGCTTTTTGTTCAATTTCTCGTGCAGTCAAATTCTCATCAGTACAGGTC A N S A A F C S I S R A V K F S S V Q V L I Q Q L F V Q F L V Q S N S H Q Y R S - F S S F L F N F S C S Q I L I S T G . . . . . . 3671 AAGAGAATGGACCCCTGGCCTCGGATGTCCATATAAAGAACACGACAAACATAA K R M D P W P R M S I - R T R Q T - R E W T P G L G C P Y K E H D K H Q E N G P L A S D V H I K N T T N I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 3724 TTATGTTTGTCGTGTTCTTTATATGGACATCCGAGGCCAGGGGTCCATTCTCTTGACCTG L C L S C S L Y G H P R P G V H S L D L Y V C R V L Y M D I R G Q G S I L L T C M F V V F F I W T S E A R G P F S - P . . . . . . 3664 TACTGATGAGAATTTGACTGCACGAGAAATTGAACAAAAAGCTGCTGAATTAGC Y - - E F D C T R N - T K S C - I S T D E N L T A R E I E Q K A A E L V L M R I - L H E K L N K K L L N - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 10420 4628 AGS-1 (5599 4628) SCR (e 1.000) Exon 1 5599 4628 ( 972 n); score: 1.000 PGS (5599 4628) SGN-U314100- PGS (5547 4658) SGN-U314099- PGS (5349 4781) SGN-U333798- 3-phase translation of AGS-1 (-strand): . . . . . . 5599 TTTCAATTTAAAATTAAAATACCATATATAAGACAAAGCATCGATCATAGATTGTTATTC F Q F K I K I P Y I R Q S I D H R L L F F N L K L K Y H I - D K A S I I D C Y S S I - N - N T I Y K T K H R S - I V I . . . . . . 5539 AGATCTTAGCCACTTCAAACAAACAAATGTAAAAGAAATGTGTACAAGGCAAATTAAAGA R S - P L Q T N K C K R N V Y K A N - R D L S H F K Q T N V K E M C T R Q I K D Q I L A T S N K Q M - K K C V Q G K L K . . . . . . 5479 CAATGTCCATCTTCAAAACAAATTTAACAAAAAAGAGATTGGCTCAACTCAAGATTTCTA Q C P S S K Q I - Q K R D W L N S R F L N V H L Q N K F N K K E I G S T Q D F Y T M S I F K T N L T K K R L A Q L K I S . . . . . . 5419 CTTAATTAAGCCACTTCAAGAGTATTTGTAGGAATCTCCAATGGGAAATTTGTTGTTTCA L N - A T S R V F V G I S N G K F V V S L I K P L Q E Y L - E S P M G N L L F H T - L S H F K S I C R N L Q W E I C C F . . . . . . 5359 TTGTGAGTAGAGCCATAAGGACAAAACATAACCTTGTAGTCTGTAGTCCAACTCTGACAA L - V E P - G Q N I T L - S V V Q L - Q C E - S H K D K T - P C S L - S N S D K I V S R A I R T K H N L V V C S P T L T . . . . . . 5299 GTAAAAGTACTTGTTGGATCGTCTTGAGGATAACTATAGGCATCGGGACATCTTTGTTTG V K V L V G S S - G - L - A S G H L C L - K Y L L D R L E D N Y R H R D I F V - S K S T C W I V L R I T I G I G T S L F . . . . . . 5239 AAAAATCTTGACAAATCGGTAGGACCACATGGACCTTGAGTGCAACAATATTGTTGTCCT K N L D K S V G P H G P - V Q Q Y C C P K I L T N R - D H M D L E C N N I V V L E K S - Q I G R T T W T L S A T I L L S . . . . . . 5179 CCGAATGTAGTACAAGGGTTGTTACATCCTCCGGGTACCCTAAGTGAACCAGGGCATTCA P N V V Q G L L H P P G T L S E P G H S R M - Y K G C Y I L R V P - V N Q G I H S E C S T R V V T S S G Y P K - T R A F . . . . . . 5119 CCGTTTATATTAGCAACACATTGAATTGGATGACATTTTCCCGGCCCAGGGTTAGTTGGG P F I L A T H - I G - H F P G P G L V G R L Y - Q H I E L D D I F P A Q G - L G T V Y I S N T L N W M T F S R P R V S W . . . . . . 5059 CCGAAAGACATAGGGATGTTGAATCCATCAATAACAGAAATGTCCCAGAAATCTAAGTTG P K D I G M L N P S I T E M S Q K S K L R K T - G C - I H Q - Q K C P R N L S C A E R H R D V E S I N N R N V P E I - V . . . . . . 4999 CTAAATTGATTCAAAGCGTATTCAGCTAAGGTGTTTGGTGGTTTACCCCATCCTTTGCAT L N - F K A Y S A K V F G G L P H P L H - I D S K R I Q L R C L V V Y P I L C I A K L I Q S V F S - G V W W F T P S F A . . . . . . 4939 TCCAAGACTCCACCACAATCACCGGTCTGGCACCAACCTCTACCAGCACCATCAAAATTG S K T P P Q S P V W H Q P L P A P S K L P R L H H N H R S G T N L Y Q H H Q N C F Q D S T T I T G L A P T S T S T I K I . . . . . . 4879 CAATTAGTACGACCCCAAATACGTGCCATTTTGGTGCCCGGTGGAGCCCAAAACCACCAA Q L V R P Q I R A I L V P G G A Q N H Q N - Y D P K Y V P F W C P V E P K T T N A I S T T P N T C H F G A R W S P K P P . . . . . . 4819 CTTTGACCTCTCTCGAGACGTCGGCCACCTCCTACGGGAGTCGCCGCTGCCCATACGGTG L - P L S R R R P P P T G V A A A H T V F D L S R D V G H L L R E S P L P I R C T L T S L E T S A T S Y G S R R C P Y G . . . . . . 4759 TATGGACAGTTGTTATGGACCTCAAATACACCGGAAGCATAAGTGTAAGTCACAAAGGCA Y G Q L L W T S N T P E A - V - V T K A M D S C Y G P Q I H R K H K C K S Q R Q V W T V V M D L K Y T G S I S V S H K G . . . . . . 4699 AGGAGAAAGAACACTAAACAAGTTGTCAAATGACTCATTTTAGAATAAAAGAAGAATATT R R K N T K Q V V K - L I L E - K K N I G E R T L N K L S N D S F - N K R R I F K E K E H - T S C Q M T H F R I K E E Y . . 4639 TGGTTTGTTGAT W F V D G L L L V C - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-3_AGS-1_PPS_1 (4970 4683) (frame '0'; 285 bp, 95 residues) 1 GVWWFTPSFA FQDSTTITGL APTSTSTIKI AISTTPNTCH FGARWSPKPP TLTSLETSAT 61 SYGSRRCPYG VWTVVMDLKY TGSISVSHKG KEKEH- 3-phase translation of AGS-1 (+strand): . . . . . . 4628 ATCAACAAACCAAATATTCTTCTTTTATTCTAAAATGAGTCATTTGACAACTTGTTTAGT I N K P N I L L L F - N E S F D N L F S S T N Q I F F F Y S K M S H L T T C L V Q Q T K Y S S F I L K - V I - Q L V - . . . . . . 4688 GTTCTTTCTCCTTGCCTTTGTGACTTACACTTATGCTTCCGGTGTATTTGAGGTCCATAA V L S P C L C D L H L C F R C I - G P - F F L L A F V T Y T Y A S G V F E V H N C S F S L P L - L T L M L P V Y L R S I . . . . . . 4748 CAACTGTCCATACACCGTATGGGCAGCGGCGACTCCCGTAGGAGGTGGCCGACGTCTCGA Q L S I H R M G S G D S R R R W P T S R N C P Y T V W A A A T P V G G G R R L E T T V H T P Y G Q R R L P - E V A D V S . . . . . . 4808 GAGAGGTCAAAGTTGGTGGTTTTGGGCTCCACCGGGCACCAAAATGGCACGTATTTGGGG E R S K L V V L G S T G H Q N G T Y L G R G Q S W W F W A P P G T K M A R I W G R E V K V G G F G L H R A P K W H V F G . . . . . . 4868 TCGTACTAATTGCAATTTTGATGGTGCTGGTAGAGGTTGGTGCCAGACCGGTGATTGTGG S Y - L Q F - W C W - R L V P D R - L W R T N C N F D G A G R G W C Q T G D C G V V L I A I L M V L V E V G A R P V I V . . . . . . 4928 TGGAGTCTTGGAATGCAAAGGATGGGGTAAACCACCAAACACCTTAGCTGAATACGCTTT W S L G M Q R M G - T T K H L S - I R F G V L E C K G W G K P P N T L A E Y A L V E S W N A K D G V N H Q T P - L N T L . . . . . . 4988 GAATCAATTTAGCAACTTAGATTTCTGGGACATTTCTGTTATTGATGGATTCAACATCCC E S I - Q L R F L G H F C Y - W I Q H P N Q F S N L D F W D I S V I D G F N I P - I N L A T - I S G T F L L L M D S T S . . . . . . 5048 TATGTCTTTCGGCCCAACTAACCCTGGGCCGGGAAAATGTCATCCAATTCAATGTGTTGC Y V F R P N - P W A G K M S S N S M C C M S F G P T N P G P G K C H P I Q C V A L C L S A Q L T L G R E N V I Q F N V L . . . . . . 5108 TAATATAAACGGTGAATGCCCTGGTTCACTTAGGGTACCCGGAGGATGTAACAACCCTTG - Y K R - M P W F T - G T R R M - Q P L N I N G E C P G S L R V P G G C N N P C L I - T V N A L V H L G Y P E D V T T L . . . . . . 5168 TACTACATTCGGAGGACAACAATATTGTTGCACTCAAGGTCCATGTGGTCCTACCGATTT Y Y I R R T T I L L H S R S M W S Y R F T T F G G Q Q Y C C T Q G P C G P T D L V L H S E D N N I V A L K V H V V L P I . . . . . . 5228 GTCAAGATTTTTCAAACAAAGATGTCCCGATGCCTATAGTTATCCTCAAGACGATCCAAC V K I F Q T K M S R C L - L S S R R S N S R F F K Q R C P D A Y S Y P Q D D P T C Q D F S N K D V P M P I V I L K T I Q . . . . . . 5288 AAGTACTTTTACTTGTCAGAGTTGGACTACAGACTACAAGGTTATGTTTTGTCCTTATGG K Y F Y L S E L D Y R L Q G Y V L S L W S T F T C Q S W T T D Y K V M F C P Y G Q V L L L V R V G L Q T T R L C F V L M . . . . . . 5348 CTCTACTCACAATGAAACAACAAATTTCCCATTGGAGATTCCTACAAATACTCTTGAAGT L Y S Q - N N K F P I G D S Y K Y S - S S T H N E T T N F P L E I P T N T L E V A L L T M K Q Q I S H W R F L Q I L L K . . . . . . 5408 GGCTTAATTAAGTAGAAATCTTGAGTTGAGCCAATCTCTTTTTTGTTAAATTTGTTTTGA G L I K - K S - V E P I S F L L N L F - A - L S R N L E L S Q S L F C - I C F E W L N - V E I L S - A N L F F V K F V L . . . . . . 5468 AGATGGACATTGTCTTTAATTTGCCTTGTACACATTTCTTTTACATTTGTTTGTTTGAAG R W T L S L I C L V H I S F T F V C L K D G H C L - F A L Y T F L L H L F V - S K M D I V F N L P C T H F F Y I C L F E . . . . . . 5528 TGGCTAAGATCTGAATAACAATCTATGATCGATGCTTTGTCTTATATATGGTATTTTAAT W L R S E - Q S M I D A L S Y I W Y F N G - D L N N N L - S M L C L I Y G I L I V A K I - I T I Y D R C F V L Y M V F - . . 5588 TTTAAATTGAAA F K L K L N - F - I E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-3_AGS-1_PPS_1 (4629 5414) (frame '2'; 783 bp, 261 residues) 1 STNQIFFFYS KMSHLTTCLV FFLLAFVTYT YASGVFEVHN NCPYTVWAAA TPVGGGRRLE 61 RGQSWWFWAP PGTKMARIWG RTNCNFDGAG RGWCQTGDCG GVLECKGWGK PPNTLAEYAL 121 NQFSNLDFWD ISVIDGFNIP MSFGPTNPGP GKCHPIQCVA NINGECPGSL RVPGGCNNPC 181 TTFGGQQYCC TQGPCGPTDL SRFFKQRCPD AYSYPQDDPT STFTCQSWTT DYKVMFCPYG 241 STHNETTNFP LEIPTNTLEV A- AGS-2 (8555 8503,5349 4671) SCR (e 0.755 d 0.156 a 0.189,e 0.813) Exon 1 8555 8503 ( 53 n); score: 0.755 Intron 1 8502 5350 (3153 n); Pd: 0.156 Pa: 0.189 Exon 2 5349 4671 ( 679 n); score: 0.813 PGS (8541 8503,5349 4671) SGN-U312653- PGS (8541 8503,5349 4689) SGN-U333797- PGS (8555 8503,5349 4706) SGN-U312654- 3-phase translation of AGS-2 (-strand): . . . . . . : 8555 GCAACTTCAAGAGTACTTGTAGGCATCTCCAATGGGAAATTTGTTGTTTCATT : AGCCATA A T S R V L V G I S N G K F V V S L : A I Q L Q E Y L - A S P M G N L L F H : - P - N F K S T C R H L Q W E I C C F I : S H . . . . . . 5342 AGGACAAAACATAACCTTGTAGTCTGTAGTCCAACTCTGACAAGTAAAAGTACTTGTTGG R T K H N L V V C S P T L T S K S T C W G Q N I T L - S V V Q L - Q V K V L V G K D K T - P C S L - S N S D K - K Y L L . . . . . . 5282 ATCGTCTTGAGGATAACTATAGGCATCGGGACATCTTTGTTTGAAAAATCTTGACAAATC I V L R I T I G I G T S L F E K S - Q I S S - G - L - A S G H L C L K N L D K S D R L E D N Y R H R D I F V - K I L T N . . . . . . 5222 GGTAGGACCACATGGACCTTGAGTGCAACAATATTGTTGTCCTCCGAATGTAGTACAAGG G R T T W T L S A T I L L S S E C S T R V G P H G P - V Q Q Y C C P P N V V Q G R - D H M D L E C N N I V V L R M - Y K . . . . . . 5162 GTTGTTACATCCTCCGGGTACCCTAAGTGAACCAGGGCATTCACCGTTTATATTAGCAAC V V T S S G Y P K - T R A F T V Y I S N L L H P P G T L S E P G H S P F I L A T G C Y I L R V P - V N Q G I H R L Y - Q . . . . . . 5102 ACATTGAATTGGATGACATTTTCCCGGCCCAGGGTTAGTTGGGCCGAAAGACATAGGGAT T L N W M T F S R P R V S W A E R H R D H - I G - H F P G P G L V G P K D I G M H I E L D D I F P A Q G - L G R K T - G . . . . . . 5042 GTTGAATCCATCAATAACAGAAATGTCCCAGAAATCTAAGTTGCTAAATTGATTCAAAGC V E S I N N R N V P E I - V A K L I Q S L N P S I T E M S Q K S K L L N - F K A C - I H Q - Q K C P R N L S C - I D S K . . . . . . 4982 GTATTCAGCTAAGGTGTTTGGTGGTTTACCCCATCCTTTGCATTCCAAGACTCCACCACA V F S - G V W W F T P S F A F Q D S T T Y S A K V F G G L P H P L H S K T P P Q R I Q L R C L V V Y P I L C I P R L H H . . . . . . 4922 ATCACCGGTCTGGCACCAACCTCTACCAGCACCATCAAAATTGCAATTAGTACGACCCCA I T G L A P T S T S T I K I A I S T T P S P V W H Q P L P A P S K L Q L V R P Q N H R S G T N L Y Q H H Q N C N - Y D P . . . . . . 4862 AATACGTGCCATTTTGGTGCCCGGTGGAGCCCAAAACCACCAACTTTGACCTCTCTCGAG N T C H F G A R W S P K P P T L T S L E I R A I L V P G G A Q N H Q L - P L S R K Y V P F W C P V E P K T T N F D L S R . . . . . . 4802 ACGTCGGCCACCTCCTACGGGAGTCGCCGCTGCCCATACGGTGTATGGACAGTTGTTATG T S A T S Y G S R R C P Y G V W T V V M R R P P P T G V A A A H T V Y G Q L L W D V G H L L R E S P L P I R C M D S C Y . . . . . . 4742 GACCTCAAATACACCGGAAGCATAAGTGTAAGTCACAAAGGCAAGGAGAAAGAACACTAA D L K Y T G S I S V S H K G K E K E H - T S N T P E A - V - V T K A R R K N T K G P Q I H R K H K C K S Q R Q G E R T L . . 4682 ACAAGTTGTCAA T S C Q Q V V N K L S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-3_AGS-2_PPS_1 (4970 4683) (frame '1'; 285 bp, 95 residues) 1 GVWWFTPSFA FQDSTTITGL APTSTSTIKI AISTTPNTCH FGARWSPKPP TLTSLETSAT 61 SYGSRRCPYG VWTVVMDLKY TGSISVSHKG KEKEH- AGS-3 (10420 9885,7410 7373,7242 7211) SCR (e 0.776 d 0.000 a 0.935,e 0.500 d 0.569 a 0.000,e 0.719) Exon 1 10420 9885 ( 536 n); score: 0.776 Intron 1 9884 7411 (2474 n); Pd: 0.000 Pa: 0.935 Exon 2 7410 7373 ( 38 n); score: 0.500 Intron 2 7372 7243 ( 130 n); Pd: 0.569 Pa: 0.000 Exon 3 7242 7211 ( 32 n); score: 0.719 PGS (10420 9885,7410 7373,7242 7211) SGN-U315404- 3-phase translation of AGS-3 (-strand): . . . . . . 10420 TCGCCTCTCTCTCTTTATACACAAAAGTGTATAAATTGTGTTTCTGTTTTGTATAAGCGA S P L S L Y T Q K C I N C V S V L Y K R R L S L F I H K S V - I V F L F C I S E A S L S L Y T K V Y K L C F C F V - A . . . . . . 10360 GAGAAAACTGTATATACACATGCAAAAACATATATCTTCGTGTTATACACTTAATTATAC E K T V Y T H A K T Y I F V L Y T - L Y R K L Y I H M Q K H I S S C Y T L N Y T R E N C I Y T C K N I Y L R V I H L I I . . . . . . 10300 AATTTACAAATATTTTACTTCAATTCAATTGTAGACAAATGCAAATTTTATACAAATATT N L Q I F Y F N S I V D K C K F Y T N I I Y K Y F T S I Q L - T N A N F I Q I L Q F T N I L L Q F N C R Q M Q I L Y K Y . . . . . . 10240 GCAGCGAAAAAGGCGAACGAATTATACAATTGCAGTGAAATACAATTTTCTCTTGCTTTA A A K K A N E L Y N C S E I Q F S L A L Q R K R R T N Y T I A V K Y N F L L L Y C S E K G E R I I Q L Q - N T I F S C F . . . . . . 10180 TACAACAGAAGTGTATAAATTGTGTTTATGTTTTTGTATAAAGCGAGAGAAAAACATATA Y N R S V - I V F M F L Y K A R E K H I T T E V Y K L C L C F C I K R E K N I Y I Q Q K C I N C V Y V F V - S E R K T Y . . . . . . 10120 TTTTTTTCCTATACACTTATAATTATGCAATATACATACATTTTACTTCGATTCAATTGT F F S Y T L I I M Q Y T Y I L L R F N C F F P I H L - L C N I H T F Y F D S I V I F F L Y T Y N Y A I Y I H F T S I Q L . . . . . . 10060 ATGCAAAATAAATTTTATACAAATATTGCAGAGAATTATACAATATGCATTATACAATTG M Q N K F Y T N I A E N Y T I C I I Q L C K I N F I Q I L Q R I I Q Y A L Y N C Y A K - I L Y K Y C R E L Y N M H Y T I . . . . . . 10000 CAGTGAAATATGATAGCGAATTATACAATTGCGGCGAAATAGGCCAGCAAATTATACAAT Q - N M I A N Y T I A A K - A S K L Y N S E I - - R I I Q L R R N R P A N Y T I A V K Y D S E L Y N C G E I G Q Q I I Q . . . . . . : 9940 TGTATATTATAGTGAATTATACAGTTTTATGTTTGCTATGGAGCGTAATTATACAA : TTTA C I L - - I I Q F Y V C Y G A - L Y N : L V Y Y S E L Y S F M F A M E R N Y T : I - L Y I I V N Y T V L C L L W S V I I Q : F . . . . : . . 7406 GTATATACAACAAATCGGAAAAATGCATGGCAGG : TTTTGAATTACAAATTTGTAATTTTT V Y T T N R K N A W Q : V L N Y K F V I F Y I Q Q I G K M H G R : F - I T N L - F L S I Y N K S E K C M A G : F E L Q I C N F . 7216 GTTTAC V Y F C L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-3_AGS-3_PPS_1 (10049 9885,7410 7373,7242 7212) (frame '0'; 234 bp, 78 residues) 1 ILYKYCRELY NMHYTIAVKY DSELYNCGEI GQQIIQLYII VNYTVLCLLW SVIIQFSIYN 61 KSEKCMAGFE LQICNFCL AGS-4 (8753 7803) SCR (e 1.000) Exon 1 8753 7803 ( 951 n); score: 1.000 PGS (8753 7803) SGN-U314099- PGS (8674 7803) SGN-U314100- 3-phase translation of AGS-4 (-strand): . . . . . . 8753 TCCAAATGCACTCTTGTGTGAGAATTTTGAACATCATGTGTAAGACAAATTAAAGTACAA S K C T L V - E F - T S C V R Q I K V Q P N A L L C E N F E H H V - D K L K Y N Q M H S C V R I L N I M C K T N - S T . . . . . . 8693 TATGTTATTGAAATCTTAGCCACCTCAAGATAACAAACTAAAAGAAATGTGGATAATACA Y V I E I L A T S R - Q T K R N V D N T M L L K S - P P Q D N K L K E M W I I Q I C Y - N L S H L K I T N - K K C G - Y . . . . . . 8633 AAAGACAAGTAATGAACAAAACTCAACCATTTTGAACAAGAAAGAGGTGGCTACACTCAT K D K - - T K L N H F E Q E R G G Y T H K T S N E Q N S T I L N K K E V A T L M K R Q V M N K T Q P F - T R K R W L H S . . . . . . 8573 GATGAATCTACTTATTAAGCAACTTCAAGAGTACTTGTAGGCATCTCCAATGGGAAATTT D E S T Y - A T S R V L V G I S N G K F M N L L I K Q L Q E Y L - A S P M G N L - - I Y L L S N F K S T C R H L Q W E I . . . . . . 8513 GTTGTTTCATTGTGAGTAGAGCCATAAGGACAGAACATTATCTTGTAGTCTGTAGTCCAA V V S L - V E P - G Q N I I L - S V V Q L F H C E - S H K D R T L S C S L - S N C C F I V S R A I R T E H Y L V V C S P . . . . . . 8453 CTCTGACAAGTAAAAGTACTAGTTGGATCGTCTTGAGGGTAACTATAGGCATCAGGACAT L - Q V K V L V G S S - G - L - A S G H S D K - K Y - L D R L E G N Y R H Q D I T L T S K S T S W I V L R V T I G I R T . . . . . . 8393 CTTTGTTTGAAAAATCTTGACAATTCAGTAGGACCACATGGACCGTGATTACAACAATAT L C L K N L D N S V G P H G P - L Q Q Y F V - K I L T I Q - D H M D R D Y N N I S L F E K S - Q F S R T T W T V I T T I . . . . . . 8333 TGTTGTCCTCCGAATGTTGTACAAGGGTTGTTACATCCTCCAGGTACCCTAAGTGAACCA C C P P N V V Q G L L H P P G T L S E P V V L R M L Y K G C Y I L Q V P - V N Q L L S S E C C T R V V T S S R Y P K - T . . . . . . 8273 GGGCATTCACCGTTTATATTGGCTGTGCATTGAATTGGATGACATTTTCCAGGGCCAGGC G H S P F I L A V H - I G - H F P G P G G I H R L Y W L C I E L D D I F Q G Q A R A F T V Y I G C A L N W M T F S R A R . . . . . . 8213 TTAGTTGGGCCAAAAGACATAGGGATGTTGAATCCATCAATAACAGAAATATCCCAAAAA L V G P K D I G M L N P S I T E I S Q K - L G Q K T - G C - I H Q - Q K Y P K N L S W A K R H R D V E S I N N R N I P K . . . . . . 8153 TCTAGGTTACCAAACTGGTTCAAAGCGTATTCAGCTAAGGTGTTTGGTGGTTTACCCCAT S R L P N W F K A Y S A K V F G G L P H L G Y Q T G S K R I Q L R C L V V Y P I I - V T K L V Q S V F S - G V W W F T P . . . . . . 8093 CCTTTGCAATCCAGGACTCCACCACAATCACCAGTCTGGCACCAACCTCTTCCAGCACCA P L Q S R T P P Q S P V W H Q P L P A P L C N P G L H H N H Q S G T N L F Q H H S F A I Q D S T T I T S L A P T S S S T . . . . . . 8033 TCAAAGTTGCAATTAGTACGACCCCAAATACGTGCCATTTTAGTGCCAGGTGGGGCCCAA S K L Q L V R P Q I R A I L V P G G A Q Q S C N - Y D P K Y V P F - C Q V G P K I K V A I S T T P N T C H F S A R W G P . . . . . . 7973 AACCACCAACTCTGACCTCTCTCGAGACGTCGACCACCTCCTACGGGGACCGCTGCCGCC N H Q L - P L S R R R P P P T G T A A A T T N S D L S R D V D H L L R G P L P P K P P T L T S L E T S T T S Y G D R C R . . . . . . 7913 CAAACGGTGTAGGGGCAGTTGTTATGGACCTCAAATACACCGGAACCATAAGTGTAAGTC Q T V - G Q L L W T S N T P E P - V - V K R C R G S C Y G P Q I H R N H K C K S P N G V G A V V M D L K Y T G T I S V S . . . . . . 7853 ACAAAGGCAAGGAGAAAAAACACTAAACAAGTTGTCAAGTGACTCATTTTA T K A R R K N T K Q V V K - L I L Q R Q G E K T L N K L S S D S F H K G K E K K H - T S C Q V T H F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-3_AGS-4_PPS_1 (8115 7828) (frame '0'; 285 bp, 95 residues) 1 GVWWFTPSFA IQDSTTITSL APTSSSTIKV AISTTPNTCH FSARWGPKPP TLTSLETSTT 61 SYGDRCRPNG VGAVVMDLKY TGTISVSHKG KEKKH- >C08HBa0235H18.1-_PGL-3_AGS-4_PPS_2 (8231 7959) (frame '1'; 270 bp, 90 residues) 1 HFPGPGLVGP KDIGMLNPSI TEISQKSRLP NWFKAYSAKV FGGLPHPLQS RTPPQSPVWH 61 QPLPAPSKLQ LVRPQIRAIL VPGGAQNHQL - >C08HBa0235H18.1-_PGL-3_AGS-4_PPS_3 (8568 8374) (frame '0'; 192 bp, 64 residues) 1 IYLLSNFKST CRHLQWEICC FIVSRAIRTE HYLVVCSPTL TSKSTSWIVL RVTIGIRTSL 61 FEKS- 3-phase translation of AGS-4 (+strand): . . . . . . 7803 TAAAATGAGTCACTTGACAACTTGTTTAGTGTTTTTTCTCCTTGCCTTTGTGACTTACAC - N E S L D N L F S V F S P C L C D L H K M S H L T T C L V F F L L A F V T Y T K - V T - Q L V - C F F S L P L - L T . . . . . . 7863 TTATGGTTCCGGTGTATTTGAGGTCCATAACAACTGCCCCTACACCGTTTGGGCGGCAGC L W F R C I - G P - Q L P L H R L G G S Y G S G V F E V H N N C P Y T V W A A A L M V P V Y L R S I T T A P T P F G R Q . . . . . . 7923 GGTCCCCGTAGGAGGTGGTCGACGTCTCGAGAGAGGTCAGAGTTGGTGGTTTTGGGCCCC G P R R R W S T S R E R S E L V V L G P V P V G G G R R L E R G Q S W W F W A P R S P - E V V D V S R E V R V G G F G P . . . . . . 7983 ACCTGGCACTAAAATGGCACGTATTTGGGGTCGTACTAATTGCAACTTTGATGGTGCTGG T W H - N G T Y L G S Y - L Q L - W C W P G T K M A R I W G R T N C N F D G A G H L A L K W H V F G V V L I A T L M V L . . . . . . 8043 AAGAGGTTGGTGCCAGACTGGTGATTGTGGTGGAGTCCTGGATTGCAAAGGATGGGGTAA K R L V P D W - L W W S P G L Q R M G - R G W C Q T G D C G G V L D C K G W G K E E V G A R L V I V V E S W I A K D G V . . . . . . 8103 ACCACCAAACACCTTAGCTGAATACGCTTTGAACCAGTTTGGTAACCTAGATTTTTGGGA T T K H L S - I R F E P V W - P R F L G P P N T L A E Y A L N Q F G N L D F W D N H Q T P - L N T L - T S L V T - I F G . . . . . . 8163 TATTTCTGTTATTGATGGATTCAACATCCCTATGTCTTTTGGCCCAACTAAGCCTGGCCC Y F C Y - W I Q H P Y V F W P N - A W P I S V I D G F N I P M S F G P T K P G P I F L L L M D S T S L C L L A Q L S L A . . . . . . 8223 TGGAAAATGTCATCCAATTCAATGCACAGCCAATATAAACGGTGAATGCCCTGGTTCACT W K M S S N S M H S Q Y K R - M P W F T G K C H P I Q C T A N I N G E C P G S L L E N V I Q F N A Q P I - T V N A L V H . . . . . . 8283 TAGGGTACCTGGAGGATGTAACAACCCTTGTACAACATTCGGAGGACAACAATATTGTTG - G T W R M - Q P L Y N I R R T T I L L R V P G G C N N P C T T F G G Q Q Y C C L G Y L E D V T T L V Q H S E D N N I V . . . . . . 8343 TAATCACGGTCCATGTGGTCCTACTGAATTGTCAAGATTTTTCAAACAAAGATGTCCTGA - S R S M W S Y - I V K I F Q T K M S - N H G P C G P T E L S R F F K Q R C P D V I T V H V V L L N C Q D F S N K D V L . . . . . . 8403 TGCCTATAGTTACCCTCAAGACGATCCAACTAGTACTTTTACTTGTCAGAGTTGGACTAC C L - L P S R R S N - Y F Y L S E L D Y A Y S Y P Q D D P T S T F T C Q S W T T M P I V T L K T I Q L V L L L V R V G L . . . . . . 8463 AGACTACAAGATAATGTTCTGTCCTTATGGCTCTACTCACAATGAAACAACAAATTTCCC R L Q D N V L S L W L Y S Q - N N K F P D Y K I M F C P Y G S T H N E T T N F P Q T T R - C S V L M A L L T M K Q Q I S . . . . . . 8523 ATTGGAGATGCCTACAAGTACTCTTGAAGTTGCTTAATAAGTAGATTCATCATGAGTGTA I G D A Y K Y S - S C L I S R F I M S V L E M P T S T L E V A - - V D S S - V - H W R C L Q V L L K L L N K - I H H E C . . . . . . 8583 GCCACCTCTTTCTTGTTCAAAATGGTTGAGTTTTGTTCATTACTTGTCTTTTGTATTATC A T S F L F K M V E F C S L L V F C I I P P L S C S K W L S F V H Y L S F V L S S H L F L V Q N G - V L F I T C L L Y Y . . . . . . 8643 CACATTTCTTTTAGTTTGTTATCTTGAGGTGGCTAAGATTTCAATAACATATTGTACTTT H I S F S L L S - G G - D F N N I L Y F T F L L V C Y L E V A K I S I T Y C T L P H F F - F V I L R W L R F Q - H I V L . . . . . . 8703 AATTTGTCTTACACATGATGTTCAAAATTCTCACACAAGAGTGCATTTGGA N L S Y T - C S K F S H K S A F G I C L T H D V Q N S H T R V H L - F V L H M M F K I L T Q E C I W Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-3_AGS-4_PPS_1 (7804 8559) (frame '2'; 753 bp, 251 residues) 1 KMSHLTTCLV FFLLAFVTYT YGSGVFEVHN NCPYTVWAAA VPVGGGRRLE RGQSWWFWAP 61 PGTKMARIWG RTNCNFDGAG RGWCQTGDCG GVLDCKGWGK PPNTLAEYAL NQFGNLDFWD 121 ISVIDGFNIP MSFGPTKPGP GKCHPIQCTA NINGECPGSL RVPGGCNNPC TTFGGQQYCC 181 NHGPCGPTEL SRFFKQRCPD AYSYPQDDPT STFTCQSWTT DYKIMFCPYG STHNETTNFP 241 LEMPTSTLEV A- AGS-5 (10028 9971,9939 9841) SCR (e 0.922 d 0.000 a 0.000,e 0.854) Exon 1 10028 9971 ( 58 n); score: 0.922 Intron 1 9970 9940 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 2 9939 9841 ( 99 n); score: 0.854 PGS (10028 9971,9939 9841) SGN-U325194- 3-phase translation of AGS-5 (-strand): . . . . . . : 10028 GAATTATACAATATGCATTATACAATTGCAGTGAAATATGATAGCGAATTATACAATT : GT E L Y N M H Y T I A V K Y D S E L Y N : C N Y T I C I I Q L Q - N M I A N Y T I : V I I Q Y A L Y N C S E I - - R I I Q L : . . . . . . 9937 ATATTATAGTGAATTATACAGTTTTATGTTTGCTATGGAGCGTAATTATACAAATTTTGC I L - - I I Q F Y V C Y G A - L Y K F C Y Y S E L Y S F M F A M E R N Y T N F A Y I I V N Y T V L C L L W S V I I Q I L . . . . 9877 TATAACACACAAATATAAATTTTTTATTTGCTATATG Y N T Q I - I F Y L L Y I T H K Y K F F I C Y M L - H T N I N F L F A I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 7251 12145 AGS-1 (7251 7285,11310 12117) SCR (e 0.714 d 0.000 a 0.648,e 0.848) Exon 1 7251 7285 ( 35 n); score: 0.714 Intron 1 7286 11309 (4024 n); Pd: 0.000 Pa: 0.648 Exon 2 11310 12117 ( 808 n); score: 0.848 PGS (7251 7285,11310 11997) SGN-U333798- PGS (11425 12117) SGN-U314099- PGS (11425 12105) SGN-U314100- PGS (11441 11652) SGN-U333796- 3-phase translation of AGS-1 (+strand): . . . . : . . 7251 TTATTTTATTTATGAAAACATAACCAATAAAAATT : GTTTATTACAAGCCAATTATATAAC L F Y L - K H N Q - K L : F I T S Q L Y N Y F I Y E N I T N K N : C L L Q A N Y I T I L F M K T - P I K I : V Y Y K P I I - . . . . . . 11335 TCGACTACTTCAAGCAATTTAAAAGAAAGTGACTCAATTTTACTTAGCCTCTTCATCACT S T T S S N L K E S D S I L L S L F I T R L L Q A I - K K V T Q F Y L A S S S L L D Y F K Q F K R K - L N F T - P L H H . . . . . . 11395 TGAGGGCATCTCCAAGGGGAAATTTGGGCTAGTAACACCATTAGGACAAAAAACAACCCT - G H L Q G E I W A S N T I R T K N N P E G I S K G K F G L V T P L G Q K T T L L R A S P R G N L G - - H H - D K K Q P . . . . . . 11455 ATAATTTGTACTACCACTAGGGCAAGTAAATGTGCTAGTAGGATCATCTTGTGGGTAGCT I I C T T T R A S K C A S R I I L W V A - F V L P L G Q V N V L V G S S C G - L Y N L Y Y H - G K - M C - - D H L V G S . . . . . . 11515 ATACGCATCAGGACATCTTTGTTTGAAAAATCTCGACAAATCAGTAGGGCCACATGGACC I R I R T S L F E K S R Q I S R A T W T Y A S G H L C L K N L D K S V G P H G P Y T H Q D I F V - K I S T N Q - G H M D . . . . . . 11575 TTGTGTGCAACAATATTGTTGTCCTCCGAACGTGGTACAAGGATTGTTACATCCTCCGGG L C A T I L L S S E R G T R I V T S S G C V Q Q Y C C P P N V V Q G L L H P P G L V C N N I V V L R T W Y K D C Y I L R . . . . . . 11635 TACCCTAAGTGAACCAGGACATTCACCATTTATATTAGCCGTACAATGAATTGCATGGCA Y P K - T R T F T I Y I S R T M N C M A T L S E P G H S P F I L A V Q - I A W H V P - V N Q D I H H L Y - P Y N E L H G . . . . . . 11695 TTTCCCTCCACTAGGATTGGTCGGGGCGAAAGTCATTGGAATATTAAATCCATCGACTAA F P S T R I G R G E S H W N I K S I D - F P P L G L V G A K V I G I L N P S T K I S L H - D W S G R K S L E Y - I H R L . . . . . . 11755 AGAAATGTCCCAGAAATCTAGGTTGCTAAACTGGTCCAAGGCGTACTCGGCCAGGGTGTT R N V P E I - V A K L V Q G V L G Q G V E M S Q K S R L L N W S K A Y S A R V F K K C P R N L G C - T G P R R T R P G C . . . . . . 11815 TGGTGGTTTGCCCCACCCGGTACATTGCAAGACCCCACCACAATCACCAGTCTGACATGA W W F A P P G T L Q D P T T I T S L T - G G L P H P V H C K T P P Q S P V - H E L V V C P T R Y I A R P H H N H Q S D M . . . . . . 11875 ACCTCTACCAGCACCATCAAAGTTGCAATTCGTACGACCCCATATACGTGCCATCTTAGT T S T S T I K V A I R T T P Y T C H L S P L P A P S K L Q F V R P H I R A I L V N L Y Q H H Q S C N S Y D P I Y V P S - . . . . . . 11935 GCCCCTCGGTGCATTGATGACCCATGTTTGGCCTCGATCAAGACGTCGACCACCGCCTAT A P R C I D D P C L A S I K T S T T A Y P L G A L M T H V W P R S R R R P P P I C P S V H - - P M F G L D Q D V D H R L . . . . . . 11995 TGGGGTCGACGCCGCCCAGACGGTGTATGGACAGTTGTTGCGTACCTCGAAAGTGGCAGC W G R R R P D G V W T V V A Y L E S G S G V D A A Q T V Y G Q L L R T S K V A A L G S T P P R R C M D S C C V P R K W Q . . . . . . 12055 ATAAGTGTAAGTCACAAAAGCAAGAAGGAAGAAAACAAAAGAAGATCTCAAGTAGGCCAT I S V S H K S K K E E N K R R S Q V G H - V - V T K A R R K K T K E D L K - A M H K C K S Q K Q E G R K Q K K I S S R P . 12115 GTT V C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-4_AGS-1_PPS_1 (11398 11646) (frame '1'; 246 bp, 82 residues) 1 GHLQGEIWAS NTIRTKNNPI ICTTTRASKC ASRIILWVAI RIRTSLFEKS RQISRATWTL 61 CATILLSSER GTRIVTSSGY PK- >C08HBa0235H18.1+_PGL-4_AGS-1_PPS_2 (11875 12117) (frame '1'; 243 bp, 81 residues) 1 TSTSTIKVAI RTTPYTCHLS APRCIDDPCL ASIKTSTTAY WGRRRPDGVW TVVAYLESGS 61 ISVSHKSKKE ENKRRSQVGH V AGS-2 (11271 12145) SCR (e 1.000) Exon 1 11271 12145 ( 875 n); score: 1.000 PGS (11271 12145) SGN-U312653- PGS (11271 12089) SGN-U333797- 3-phase translation of AGS-2 (+strand): . . . . . . 11271 TTTGTGATGATGTGACTTTTATTCATGTAATTATATTAGGTTTATTACAAGCCAATTATA F V M M - L L F M - L Y - V Y Y K P I I L - - C D F Y S C N Y I R F I T S Q L Y C D D V T F I H V I I L G L L Q A N Y . . . . . . 11331 TAACTCGACTACTTCAAGCAATTTAAAAGAAAGTGACTCAATTTTACTTAGCCTCTTCAT - L D Y F K Q F K R K - L N F T - P L H N S T T S S N L K E S D S I L L S L F I I T R L L Q A I - K K V T Q F Y L A S S . . . . . . 11391 CACTTGAGGGCATCTCCAAGGGGAAATTTGGGCTAGTAACACCATTAGGACAAAAAACAA H L R A S P R G N L G - - H H - D K K Q T - G H L Q G E I W A S N T I R T K N N S L E G I S K G K F G L V T P L G Q K T . . . . . . 11451 CCCTATAATTTGTACTACCACTAGGGCAAGTAAATGTGCTAGTAGGATCATCTTGTGGGT P Y N L Y Y H - G K - M C - - D H L V G P I I C T T T R A S K C A S R I I L W V T L - F V L P L G Q V N V L V G S S C G . . . . . . 11511 AGCTATACGCATCAGGACATCTTTGTTTGAAAAATCTCGACAAATCAGTAGGGCCACATG S Y T H Q D I F V - K I S T N Q - G H M A I R I R T S L F E K S R Q I S R A T W - L Y A S G H L C L K N L D K S V G P H . . . . . . 11571 GACCTTGTGTGCAACAATATTGTTGTCCTCCGAACGTGGTACAAGGATTGTTACATCCTC D L V C N N I V V L R T W Y K D C Y I L T L C A T I L L S S E R G T R I V T S S G P C V Q Q Y C C P P N V V Q G L L H P . . . . . . 11631 CGGGTACCCTAAGTGAACCAGGACATTCACCATTTATATTAGCCGTACAATGAATTGCAT R V P - V N Q D I H H L Y - P Y N E L H G Y P K - T R T F T I Y I S R T M N C M P G T L S E P G H S P F I L A V Q - I A . . . . . . 11691 GGCATTTCCCTCCACTAGGATTGGTCGGGGCGAAAGTCATTGGAATATTAAATCCATCGA G I S L H - D W S G R K S L E Y - I H R A F P S T R I G R G E S H W N I K S I D W H F P P L G L V G A K V I G I L N P S . . . . . . 11751 CTAAAGAAATGTCCCAGAAATCTAGGTTGCTAAACTGGTCCAAGGCGTACTCGGCCAGGG L K K C P R N L G C - T G P R R T R P G - R N V P E I - V A K L V Q G V L G Q G T K E M S Q K S R L L N W S K A Y S A R . . . . . . 11811 TGTTTGGTGGTTTGCCCCACCCGGTACATTGCAAGACCCCACCACAATCACCAGTCTGAC C L V V C P T R Y I A R P H H N H Q S D V W W F A P P G T L Q D P T T I T S L T V F G G L P H P V H C K T P P Q S P V - . . . . . . 11871 ATGAACCTCTACCAGCACCATCAAAGTTGCAATTCGTACGACCCCATATACGTGCCATCT M N L Y Q H H Q S C N S Y D P I Y V P S - T S T S T I K V A I R T T P Y T C H L H E P L P A P S K L Q F V R P H I R A I . . . . . . 11931 TAGTGCCCCTCGGTGCATTGATGACCCATGTTTGGCCTCGATCAAGACGTCGACCACCGC - C P S V H - - P M F G L D Q D V D H R S A P R C I D D P C L A S I K T S T T A L V P L G A L M T H V W P R S R R R P P . . . . . . 11991 CTATTGGGGTCGACGCCGCCCAGACGGTGTATGGACAGTTGTTGCGTACCTCGAAAGTGG L L G S T P P R R C M D S C C V P R K W Y W G R R R P D G V W T V V A Y L E S G P I G V D A A Q T V Y G Q L L R T S K V . . . . . . 12051 CAGCATAAGTGTAAGTCACAAAAGCAAGAAGGAAGAAAACAAAAGAAGATCTCAAGTAGG Q H K C K S Q K Q E G R K Q K K I S S R S I S V S H K S K K E E N K R R S Q V G A A - V - V T K A R R K K T K E D L K - . . . . 12111 CCATGTTTGTGGAACTATTTTTTTAAATGTAAGTT P C L W N Y F F K C K H V C G T I F L N V S A M F V E L F F - M - V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-4_AGS-2_PPS_1 (11875 12144) (frame '2'; 270 bp, 90 residues) 1 TSTSTIKVAI RTTPYTCHLS APRCIDDPCL ASIKTSTTAY WGRRRPDGVW TVVAYLESGS 61 ISVSHKSKKE ENKRRSQVGH VCGTIFLNVS >C08HBa0235H18.1+_PGL-4_AGS-2_PPS_2 (11398 11646) (frame '2'; 246 bp, 82 residues) 1 GHLQGEIWAS NTIRTKNNPI ICTTTRASKC ASRIILWVAI RIRTSLFEKS RQISRATWTL 61 CATILLSSER GTRIVTSSGY PK- 3-phase translation of AGS-2 (-strand): . . . . . . 12145 AACTTACATTTAAAAAAATAGTTCCACAAACATGGCCTACTTGAGATCTTCTTTTGTTTT N L H L K K - F H K H G L L E I F F C F T Y I - K N S S T N M A Y L R S S F V F L T F K K I V P Q T W P T - D L L L F . . . . . . 12085 CTTCCTTCTTGCTTTTGTGACTTACACTTATGCTGCCACTTTCGAGGTACGCAACAACTG L P S C F C D L H L C C H F R G T Q Q L F L L A F V T Y T Y A A T F E V R N N C S S F L L L - L T L M L P L S R Y A T T . . . . . . 12025 TCCATACACCGTCTGGGCGGCGTCGACCCCAATAGGCGGTGGTCGACGTCTTGATCGAGG S I H R L G G V D P N R R W S T S - S R P Y T V W A A S T P I G G G R R L D R G V H T P S G R R R P Q - A V V D V L I E . . . . . . 11965 CCAAACATGGGTCATCAATGCACCGAGGGGCACTAAGATGGCACGTATATGGGGTCGTAC P N M G H Q C T E G H - D G T Y M G S Y Q T W V I N A P R G T K M A R I W G R T A K H G S S M H R G A L R W H V Y G V V . . . . . . 11905 GAATTGCAACTTTGATGGTGCTGGTAGAGGTTCATGTCAGACTGGTGATTGTGGTGGGGT E L Q L - W C W - R F M S D W - L W W G N C N F D G A G R G S C Q T G D C G G V R I A T L M V L V E V H V R L V I V V G . . . . . . 11845 CTTGCAATGTACCGGGTGGGGCAAACCACCAAACACCCTGGCCGAGTACGCCTTGGACCA L A M Y R V G Q T T K H P G R V R L G P L Q C T G W G K P P N T L A E Y A L D Q S C N V P G G A N H Q T P W P S T P W T . . . . . . 11785 GTTTAGCAACCTAGATTTCTGGGACATTTCTTTAGTCGATGGATTTAATATTCCAATGAC V - Q P R F L G H F F S R W I - Y S N D F S N L D F W D I S L V D G F N I P M T S L A T - I S G T F L - S M D L I F Q - . . . . . . 11725 TTTCGCCCCGACCAATCCTAGTGGAGGGAAATGCCATGCAATTCATTGTACGGCTAATAT F R P D Q S - W R E M P C N S L Y G - Y F A P T N P S G G K C H A I H C T A N I L S P R P I L V E G N A M Q F I V R L I . . . . . . 11665 AAATGGTGAATGTCCTGGTTCACTTAGGGTACCCGGAGGATGTAACAATCCTTGTACCAC K W - M S W F T - G T R R M - Q S L Y H N G E C P G S L R V P G G C N N P C T T - M V N V L V H L G Y P E D V T I L V P . . . . . . 11605 GTTCGGAGGACAACAATATTGTTGCACACAAGGTCCATGTGGCCCTACTGATTTGTCGAG V R R T T I L L H T R S M W P Y - F V E F G G Q Q Y C C T Q G P C G P T D L S R R S E D N N I V A H K V H V A L L I C R . . . . . . 11545 ATTTTTCAAACAAAGATGTCCTGATGCGTATAGCTACCCACAAGATGATCCTACTAGCAC I F Q T K M S - C V - L P T R - S Y - H F F K Q R C P D A Y S Y P Q D D P T S T D F S N K D V L M R I A T H K M I L L A . . . . . . 11485 ATTTACTTGCCCTAGTGGTAGTACAAATTATAGGGTTGTTTTTTGTCCTAATGGTGTTAC I Y L P - W - Y K L - G C F L S - W C Y F T C P S G S T N Y R V V F C P N G V T H L L A L V V V Q I I G L F F V L M V L . . . . . . 11425 TAGCCCAAATTTCCCCTTGGAGATGCCCTCAAGTGATGAAGAGGCTAAGTAAAATTGAGT - P K F P L G D A L K - - R G - V K L S S P N F P L E M P S S D E E A K - N - V L A Q I S P W R C P Q V M K R L S K I E . . . . . . 11365 CACTTTCTTTTAAATTGCTTGAAGTAGTCGAGTTATATAATTGGCTTGTAATAAACCTAA H F L L N C L K - S S Y I I G L - - T - T F F - I A - S S R V I - L A C N K P N S L S F K L L E V V E L Y N W L V I N L . . . . 11305 TATAATTACATGAATAAAAGTCACATCATCACAAA Y N Y M N K S H I I T I I T - I K V T S S Q I - L H E - K S H H H K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-4_AGS-2_PPS_1 (12132 11374) (frame '2'; 756 bp, 252 residues) 1 KNSSTNMAYL RSSFVFFLLA FVTYTYAATF EVRNNCPYTV WAASTPIGGG RRLDRGQTWV 61 INAPRGTKMA RIWGRTNCNF DGAGRGSCQT GDCGGVLQCT GWGKPPNTLA EYALDQFSNL 121 DFWDISLVDG FNIPMTFAPT NPSGGKCHAI HCTANINGEC PGSLRVPGGC NNPCTTFGGQ 181 QYCCTQGPCG PTDLSRFFKQ RCPDAYSYPQ DDPTSTFTCP SGSTNYRVVF CPNGVTSPNF 241 PLEMPSSDEE AK- PGL 5 (+ strand): 13447 17147 AGS-1 (13447 13493,14665 14721,15939 15987,16610 17145) SCR (e 0.723 d 0.000 a 0.000,e 0.579 d 0.935 a 0.000,e 0.582 d 0.000 a 0.764,e 0.777) Exon 1 13447 13493 ( 47 n); score: 0.723 Intron 1 13494 14664 (1171 n); Pd: 0.000 Pa: 0.000 Exon 2 14665 14721 ( 57 n); score: 0.579 Intron 2 14722 15938 (1217 n); Pd: 0.935 Pa: 0.000 Exon 3 15939 15987 ( 49 n); score: 0.582 Intron 3 15988 16609 ( 622 n); Pd: 0.000 Pa: 0.764 Exon 4 16610 17145 ( 536 n); score: 0.777 PGS (13447 13493,14665 14721,15939 15987,16610 17145) SGN-U332003- PGS (16610 16984) SGN-U315283- 3-phase translation of AGS-1 (+strand): . . . . . : . 13447 TTCTAAAAGTTATTTTTTTTTTAAAAAAAAAGAACGATAATTCAAAT : TTTGTAACGTGAC F - K L F F F - K K R T I I Q I : L - R D S K S Y F F F K K K E R - F K : F C N V T L K V I F F L K K K N D N S N : F V T - . . . . . : . 14678 GGAACTTATTTCTCAAAATAAATATTATTTAAAAAAAAAAAACA : TATAAATAATTAGTTG G T Y F S K - I L F K K K K H : I N N - L E L I S Q N K Y Y L K K K N : I - I I S C R N L F L K I N I I - K K K T : Y K - L V . . . . : . . 15955 TATTTTTTTTTTATAAATTATAGGTGTGACAAA : ATAGTGACATTTGTTTTATCGAAAAAG Y F F F I N Y R C D K : I V T F V L S K K I F F L - I I G V T K : - - H L F Y R K R V F F F Y K L - V - Q : N S D I C F I E K . . . . . . 16637 GGTGGTGATTTTCGAAAAGAGTTTGTTTTTAGACTTTTAGGAGTCGCCACTTAATTTTTA G G D F R K E F V F R L L G V A T - F L V V I F E K S L F L D F - E S P L N F - G W - F S K R V C F - T F R S R H L I F . . . . . . 16697 AGAAAAATCAAGAAAACTTCGTTTCTAAACAACTTAAACAGAAAAAATTGTTTTGAAACA R K I K K T S F L N N L N R K N C F E T E K S R K L R F - T T - T E K I V L K H K K N Q E N F V S K Q L K Q K K L F - N . . . . . . 16757 TTTTAAGGGTTCGGGATTCCTATTAGTATCTTAGGAAGGTGTAAGGCACCCAAAACACTC F - G F G I P I S I L G R C K A P K T L F K G S G F L L V S - E G V R H P K H S I L R V R D S Y - Y L R K V - G T Q N T . . . . . . 16817 CGTTAACTTACGGTTTTCCAATGATTAACTATTTGATTATTTTTATTTTTAACCTTTGCA R - L T V F Q - L T I - L F L F L T F A V N L R F S N D - L F D Y F Y F - P L Q P L T Y G F P M I N Y L I I F I F N L C . . . . . . 16877 AATTTATTTGAACTTTTAACATGACTTACTTAGCCAAACTTAGCCAATTTTGAAATATTT N L F E L L T - L T - P N L A N F E I F I Y L N F - H D L L S Q T - P I L K Y L K F I - T F N M T Y L A K L S Q F - N I . . . . . . 16937 ATTGTTTATCTTGCCAGTTTACGAAACCATTTCAAAGTTAAGCTTACTCAAGGTTTTATC I V Y L A S L R N H F K V K L T Q G F I L F I L P V Y E T I S K L S L L K V L S Y C L S C Q F T K P F Q S - A Y S R F Y . . . . . . 16997 TAAACAAGCCTTACGAATTTGAAACAATTTATCATTTAGAAGTTAGTTTTAAAAATTTTT - T S L T N L K Q F I I - K L V L K I F K Q A L R I - N N L S F R S - F - K F L L N K P Y E F E T I Y H L E V S F K N F . . . . . . 17057 AGGTTTGATAAAATAACAGGCGTTCGATGAGGGTTTGGAGTTTCCTAATCCTAAGCTAAC R F D K I T G V R - G F G V S - S - A N G L I K - Q A F D E G L E F P N P K L T - V - - N N R R S M R V W S F L I L S - . . . 17117 GGCATTGAAAACAAAATAAGATAAGCAAA G I E N K I R - A A L K T K - D K Q R H - K Q N K I S K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (13456 14445) SCR (e 0.982) Exon 1 13456 14445 ( 990 n); score: 0.982 PGS (13456 14445) SGN-U312654- PGS (13489 14167) SGN-U312655- PGS (13599 14311) SGN-U333798- PGS (13640 14427) SGN-U312653- PGS (13640 14402) SGN-U333797- 3-phase translation of AGS-2 (+strand): . . . . . . 13456 TTATTTTTTTTTTAAAAAAAAAGAACGATAATTCAAATGCACTGTTGTTTTATACATCTA L F F F - K K R T I I Q M H C C F I H L Y F F F K K K E R - F K C T V V L Y I - I F F L K K K N D N S N A L L F Y T S . . . . . . 13516 AGACAAAAGTACACATGAGATGTAACTCTTATTCCGGTCTTTAAGTTTGTTACGAACTCT R Q K Y T - D V T L I P V F K F V T N S D K S T H E M - L L F R S L S L L R T L K T K V H M R C N S Y S G L - V C Y E L . . . . . . 13576 TATCAATAAAGTAAAAGTGAATATTTAAAAAACTGAGCTATTAAGATTTTTCATTACGGT Y Q - S K S E Y L K N - A I K I F H Y G I N K V K V N I - K T E L L R F F I T V L S I K - K - I F K K L S Y - D F S L R . . . . . . 13636 AGAGATCAGTTGACTAATTGAGGCGATTTAAAATGAAGAAACTCAAATTCACTTGGCCAC R D Q L T N - G D L K - R N S N S L G H E I S - L I E A I - N E E T Q I H L A T - R S V D - L R R F K M K K L K F T W P . . . . . . 13696 TTCATCAGTACTTGCAGGCATCTCCAAGGGGAAATTTGGATCAGCAACACCATTAGGACA F I S T C R H L Q G E I W I S N T I R T S S V L A G I S K G K F G S A T P L G Q L H Q Y L Q A S P R G N L D Q Q H H - D . . . . . . 13756 AAAGACAACCCTATAGTTTGTACTACCACCAGGGCAAGTAAATGTGCTTGTAGGATCGTC K D N P I V C T T T R A S K C A C R I V K T T L - F V L P P G Q V N V L V G S S K R Q P Y S L Y Y H Q G K - M C L - D R . . . . . . 13816 TTGTGGGTAGCTATAAGCATCGGGACATCTTTTCTTGAAAAATTTGGACAACTCTGTAGG L W V A I S I G T S F L E K F G Q L C R C G - L - A S G H L F L K N L D N S V G L V G S Y K H R D I F S - K I W T T L - . . . . . . 13876 GCCACATGGACCTTGGGTGCAACAATATTGTTGTCCTCCAAACGTGGTACAAGGGTTGTT A T W T L G A T I L L S S K R G T R V V P H G P W V Q Q Y C C P P N V V Q G L L G H M D L G C N N I V V L Q T W Y K G C . . . . . . 13936 ACATCCTCCAGGTACCTTAAGGGCGCGAGGACATTCACCATTTATATTGGCCGTGCAATG T S S R Y L K G A R T F T I Y I G R A M H P P G T L R A R G H S P F I L A V Q - Y I L Q V P - G R E D I H H L Y W P C N . . . . . . 13996 AATTGCGTGACATTTTCCTCCACTAGGTTTTGTTGGGGCAAAAGTCATTGGAATATTAAA N C V T F S S T R F C W G K S H W N I K I A - H F P P L G F V G A K V I G I L N E L R D I F L H - V L L G Q K S L E Y - . . . . . . 14056 TCCATCGACTAAAGAAATGTCCCAAAAATCTAAGTTGCTAAACTGGTCCAAGGCGTACTC S I D - R N V P K I - V A K L V Q G V L P S T K E M S Q K S K L L N W S K A Y S I H R L K K C P K N L S C - T G P R R T . . . . . . 14116 GGCTAGGGTGTTTGGGGGTTTGCCCCATCCGGTACACTGTAAGACTCCACCACAATCACC G - G V W G F A P S G T L - D S T T I T A R V F G G L P H P V H C K T P P Q S P R L G C L G V C P I R Y T V R L H H N H . . . . . . 14176 AGTCTGACATGTACCTCTGCCTGCAGCATTAAAGTTGCAACCAGTACGACCCCATATACG S L T C T S A C S I K V A T S T T P Y T V - H V P L P A A L K L Q P V R P H I R Q S D M Y L C L Q H - S C N Q Y D P I Y . . . . . . 14236 TGCCATCTTAGTTCCCCTCGGAGCATTGATGACCCATGTTTGGCCTCGATTGAGACGTCG C H L S S P R S I D D P C L A S I E T S A I L V P L G A L M T H V W P R L R R R V P S - F P S E H - - P M F G L D - D V . . . . . . 14296 ACCACCGCCTATCGGAGTCGATGCCGCCCAAACGGTGTATGGACAGTTGTTGCGTACCTC T T A Y R S R C R P N G V W T V V A Y L P P P I G V D A A Q T V Y G Q L L R T S D H R L S E S M P P K R C M D S C C V P . . . . . . 14356 AATAGTGGCAGCATAAGTATAAGTCACACAAAGAAGGAAGAAGAGAACAAAAGAAGATGT N S G S I S I S H T K K E E E N K R R C I V A A - V - V T Q R R K K R T K E D V Q - W Q H K Y K S H K E G R R E Q K K M . . . 14416 CAAGTAGCCCATGTTTGTTGAAATGTATAT Q V A H V C - N V Y K - P M F V E M Y S S S P C L L K C I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-5_AGS-2_PPS_1 (13672 14067) (frame '1'; 393 bp, 131 residues) 1 RNSNSLGHFI STCRHLQGEI WISNTIRTKD NPIVCTTTRA SKCACRIVLW VAISIGTSFL 61 EKFGQLCRAT WTLGATILLS SKRGTRVVTS SRYLKGARTF TIYIGRAMNC VTFSSTRFCW 121 GKSHWNIKSI D- >C08HBa0235H18.1+_PGL-5_AGS-2_PPS_2 (14158 14436) (frame '1'; 276 bp, 92 residues) 1 DSTTITSLTC TSACSIKVAT STTPYTCHLS SPRSIDDPCL ASIETSTTAY RSRCRPNGVW 61 TVVAYLNSGS ISISHTKKEE ENKRRCQVAH VC- 3-phase translation of AGS-2 (-strand): . . . . . . 14445 ATATACATTTCAACAAACATGGGCTACTTGACATCTTCTTTTGTTCTCTTCTTCCTTCTT I Y I S T N M G Y L T S S F V L F F L L Y T F Q Q T W A T - H L L L F S S S F F I H F N K H G L L D I F F C S L L P S . . . . . . 14385 TGTGTGACTTATACTTATGCTGCCACTATTGAGGTACGCAACAACTGTCCATACACCGTT C V T Y T Y A A T I E V R N N C P Y T V V - L I L M L P L L R Y A T T V H T P F L C D L Y L C C H Y - G T Q Q L S I H R . . . . . . 14325 TGGGCGGCATCGACTCCGATAGGCGGTGGTCGACGTCTCAATCGAGGCCAAACATGGGTC W A A S T P I G G G R R L N R G Q T W V G R H R L R - A V V D V S I E A K H G S L G G I D S D R R W S T S Q S R P N M G . . . . . . 14265 ATCAATGCTCCGAGGGGAACTAAGATGGCACGTATATGGGGTCGTACTGGTTGCAACTTT I N A P R G T K M A R I W G R T G C N F S M L R G E L R W H V Y G V V L V A T L H Q C S E G N - D G T Y M G S Y W L Q L . . . . . . 14205 AATGCTGCAGGCAGAGGTACATGTCAGACTGGTGATTGTGGTGGAGTCTTACAGTGTACC N A A G R G T C Q T G D C G G V L Q C T M L Q A E V H V R L V I V V E S Y S V P - C C R Q R Y M S D W - L W W S L T V Y . . . . . . 14145 GGATGGGGCAAACCCCCAAACACCCTAGCCGAGTACGCCTTGGACCAGTTTAGCAACTTA G W G K P P N T L A E Y A L D Q F S N L D G A N P Q T P - P S T P W T S L A T - R M G Q T P K H P S R V R L G P V - Q L . . . . . . 14085 GATTTTTGGGACATTTCTTTAGTCGATGGATTTAATATTCCAATGACTTTTGCCCCAACA D F W D I S L V D G F N I P M T F A P T I F G T F L - S M D L I F Q - L L P Q Q R F L G H F F S R W I - Y S N D F C P N . . . . . . 14025 AAACCTAGTGGAGGAAAATGTCACGCAATTCATTGCACGGCCAATATAAATGGTGAATGT K P S G G K C H A I H C T A N I N G E C N L V E E N V T Q F I A R P I - M V N V K T - W R K M S R N S L H G Q Y K W - M . . . . . . 13965 CCTCGCGCCCTTAAGGTACCTGGAGGATGTAACAACCCTTGTACCACGTTTGGAGGACAA P R A L K V P G G C N N P C T T F G G Q L A P L R Y L E D V T T L V P R L E D N S S R P - G T W R M - Q P L Y H V W R T . . . . . . 13905 CAATATTGTTGCACCCAAGGTCCATGTGGCCCTACAGAGTTGTCCAAATTTTTCAAGAAA Q Y C C T Q G P C G P T E L S K F F K K N I V A P K V H V A L Q S C P N F S R K T I L L H P R S M W P Y R V V Q I F Q E . . . . . . 13845 AGATGTCCCGATGCTTATAGCTACCCACAAGACGATCCTACAAGCACATTTACTTGCCCT R C P D A Y S Y P Q D D P T S T F T C P D V P M L I A T H K T I L Q A H L L A L K M S R C L - L P T R R S Y K H I Y L P . . . . . . 13785 GGTGGTAGTACAAACTATAGGGTTGTCTTTTGTCCTAATGGTGTTGCTGATCCAAATTTC G G S T N Y R V V F C P N G V A D P N F V V V Q T I G L S F V L M V L L I Q I S W W - Y K L - G C L L S - W C C - S K F . . . . . . 13725 CCCTTGGAGATGCCTGCAAGTACTGATGAAGTGGCCAAGTGAATTTGAGTTTCTTCATTT P L E M P A S T D E V A K - I - V S S F P W R C L Q V L M K W P S E F E F L H F P L G D A C K Y - - S G Q V N L S F F I . . . . . . 13665 TAAATCGCCTCAATTAGTCAACTGATCTCTACCGTAATGAAAAATCTTAATAGCTCAGTT - I A S I S Q L I S T V M K N L N S S V K S P Q L V N - S L P - - K I L I A Q F L N R L N - S T D L Y R N E K S - - L S . . . . . . 13605 TTTTAAATATTCACTTTTACTTTATTGATAAGAGTTCGTAACAAACTTAAAGACCGGAAT F - I F T F T L L I R V R N K L K D R N F K Y S L L L Y - - E F V T N L K T G I F L N I H F Y F I D K S S - Q T - R P E . . . . . . 13545 AAGAGTTACATCTCATGTGTACTTTTGTCTTAGATGTATAAAACAACAGTGCATTTGAAT K S Y I S C V L L S - M Y K T T V H L N R V T S H V Y F C L R C I K Q Q C I - I - E L H L M C T F V L D V - N N S A F E . . . 13485 TATCGTTCTTTTTTTTTAAAAAAAAAATAA Y R S F F L K K K - I V L F F - K K N L S F F F F K K K I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-5_AGS-2_PPS_1 (14445 13684) (frame '1'; 759 bp, 253 residues) 1 IYISTNMGYL TSSFVLFFLL CVTYTYAATI EVRNNCPYTV WAASTPIGGG RRLNRGQTWV 61 INAPRGTKMA RIWGRTGCNF NAAGRGTCQT GDCGGVLQCT GWGKPPNTLA EYALDQFSNL 121 DFWDISLVDG FNIPMTFAPT KPSGGKCHAI HCTANINGEC PRALKVPGGC NNPCTTFGGQ 181 QYCCTQGPCG PTELSKFFKK RCPDAYSYPQ DDPTSTFTCP GGSTNYRVVF CPNGVADPNF 241 PLEMPASTDE VAK- AGS-3 (15214 15316,15420 15515,15978 16295) SCR (e 0.990 d 0.747 a 1.000,e 1.000 d 0.717 a 0.999,e 1.000) Exon 1 15214 15316 ( 103 n); score: 0.990 Intron 1 15317 15419 ( 103 n); Pd: 0.747 Pa: 1.000 Exon 2 15420 15515 ( 96 n); score: 1.000 Intron 2 15516 15977 ( 462 n); Pd: 0.717 Pa: 0.999 Exon 3 15978 16295 ( 318 n); score: 1.000 PGS (15214 15316,15420 15515,15978 16295) SGN-U316652+ 3-phase translation of AGS-3 (+strand): . . . . . . 15214 ACAAATATAAACTTTAGATTCTTAAAAACAAAGCTGAATTATATGGAGGCAAATAAGTCT T N I N F R F L K T K L N Y M E A N K S Q I - T L D S - K Q S - I I W R Q I S L K Y K L - I L K N K A E L Y G G K - V . . . . . : . 15274 ATGGTGAAGTTGGTTGCTTTCTTGATAATTCTTGTATCATCAT : GCTTTCAATCTCTCACT M V K L V A F L I I L V S S : C F Q S L T W - S W L L S - - F L Y H H : A F N L S L Y G E V G C F L D N S C I I M : L S I S H . . . . . . 15437 GCTCAAGATTTGGAAATCGAAGTTAGCGATGGCTTAAATGTATTGCAAGTACATGATGTG A Q D L E I E V S D G L N V L Q V H D V L K I W K S K L A M A - M Y C K Y M M C C S R F G N R S - R W L K C I A S T - C . . : . . . . 15497 TCTCAATCTTTTTGTCCAG : GTGTGACAAAGGAAAGTTGGCCAGAACTTCTTGGAACACCA S Q S F C P : G V T K E S W P E L L G T P L N L F V Q : V - Q R K V G Q N F L E H Q V S I F L S R : C D K G K L A R T S W N T . . . . . . 16019 GCTAAGTTTGCAAAGCAAATAATTCAAAAGGAAAATCCAAAATTAACAAATGTTGAAACT A K F A K Q I I Q K E N P K L T N V E T L S L Q S K - F K R K I Q N - Q M L K L S - V C K A N N S K G K S K I N K C - N . . . . . . 16079 CTACTGAATGGTTCAGCTTTTACAGAAGATTTGAGATGCAATAGAGTTCGTCTTTTTGTA L L N G S A F T E D L R C N R V R L F V Y - M V Q L L Q K I - D A I E F V F L - S T E W F S F Y R R F E M Q - S S S F C . . . . . . 16139 AATTTATTGGACATTGTTGTACAAACTCCCAAAGTTGGTTGAACAAAATTAATTGATGTT N L L D I V V Q T P K V G - T K L I D V I Y W T L L Y K L P K L V E Q N - L M L K F I G H C C T N S Q S W L N K I N - C . . . . . . 16199 ATATCATATGTATCTAGCCTCCACAAAAATAAATTGGAGATGTATGGTTAAAATTTCCAC I S Y V S S L H K N K L E M Y G - N F H Y H M Y L A S T K I N W R C M V K I S T Y I I C I - P P Q K - I G D V W L K F P . . . . 16259 TATATTTGGTGATAAATAAATGTGGCTTTTAATATTA Y I W - - I N V A F N I I F G D K - M W L L I L L Y L V I N K C G F - Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-5_AGS-3_PPS_1 (15214 15316,15420 15515,15978 16180) (frame '1'; 399 bp, 133 residues) 1 TNINFRFLKT KLNYMEANKS MVKLVAFLII LVSSCFQSLT AQDLEIEVSD GLNVLQVHDV 61 SQSFCPGVTK ESWPELLGTP AKFAKQIIQK ENPKLTNVET LLNGSAFTED LRCNRVRLFV 121 NLLDIVVQTP KVG- AGS-4 (16663 16943,17043 17147) SCR (e 0.774 d 0.000 a 0.000,e 0.724) Exon 1 16663 16943 ( 281 n); score: 0.774 Intron 1 16944 17042 ( 99 n); Pd: 0.000 Pa: 0.000 Exon 2 17043 17147 ( 105 n); score: 0.724 PGS (16663 16943,17043 17147) SGN-U344475- 3-phase translation of AGS-4 (+strand): . . . . . . 16663 TTTTAGACTTTTAGGAGTCGCCACTTAATTTTTAAGAAAAATCAAGAAAACTTCGTTTCT F - T F R S R H L I F K K N Q E N F V S F R L L G V A T - F L R K I K K T S F L L D F - E S P L N F - E K S R K L R F . . . . . . 16723 AAACAACTTAAACAGAAAAAATTGTTTTGAAACATTTTAAGGGTTCGGGATTCCTATTAG K Q L K Q K K L F - N I L R V R D S Y - N N L N R K N C F E T F - G F G I P I S - T T - T E K I V L K H F K G S G F L L . . . . . . 16783 TATCTTAGGAAGGTGTAAGGCACCCAAAACACTCCGTTAACTTACGGTTTTCCAATGATT Y L R K V - G T Q N T P L T Y G F P M I I L G R C K A P K T L R - L T V F Q - L V S - E G V R H P K H S V N L R F S N D . . . . . . 16843 AACTATTTGATTATTTTTATTTTTAACCTTTGCAAATTTATTTGAACTTTTAACATGACT N Y L I I F I F N L C K F I - T F N M T T I - L F L F L T F A N L F E L L T - L - L F D Y F Y F - P L Q I Y L N F - H D . . . . . : . 16903 TACTTAGCCAAACTTAGCCAATTTTGAAATATTTATTGTTT : TTTTAAAAATTTTTAGGTT Y L A K L S Q F - N I Y C F : F K N F - V T - P N L A N F E I F I V : F L K I F R F L L S Q T - P I L K Y L L F : F - K F L G . . . . . . 17062 TGATAAAATAACAGGCGTTCGATGAGGGTTTGGAGTTTCCTAATCCTAAGCTAACGGCAT - - N N R R S M R V W S F L I L S - R H D K I T G V R - G F G V S - S - A N G I L I K - Q A F D E G L E F P N P K L T A . . . 17122 TGAAAACAAAATAAGATAAGCAAATA - K Q N K I S K E N K I R - A N L K T K - D K Q I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 20427 20532 AGS-1 (20427 20532) SCR (e 1.000) Exon 1 20427 20532 ( 106 n); score: 1.000 PGS (20427 20532) SGN-U319275+ 3-phase translation of AGS-1 (+strand): . . . . . . 20427 AATTCAGGCCACTTGTAGTTCGATAAGCTTGATTTACCGCACGATTTCAAAGAATCAAAA N S G H L - F D K L D L P H D F K E S K I Q A T C S S I S L I Y R T I S K N Q K F R P L V V R - A - F T A R F Q R I K . . . . . 20487 GCCACCTTGACACCGAATTATGAAGGTATCGAAATGCTCGAGAATA A T L T P N Y E G I E M L E N P P - H R I M K V S K C S R I S H L D T E L - R Y R N A R E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 20532 TATTCTCGAGCATTTCGATACCTTCATAATTCGGTGTCAAGGTGGCTTTTGATTCTTTGA Y S R A F R Y L H N S V S R W L L I L - I L E H F D T F I I R C Q G G F - F F E F S S I S I P S - F G V K V A F D S L . . . . . 20472 AATCGTGCGGTAAATCAAGCTTATCGAACTACAAGTGGCCTGAATT N R A V N Q A Y R T T S G L N I V R - I K L I E L Q V A - I K S C G K S S L S N Y K W P E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 23438 22803 AGS-1 (23438 22803) SCR (e 0.994) Exon 1 23438 22803 ( 636 n); score: 0.994 PGS (23438 22803) SGN-U319275+ 3-phase translation of AGS-1 (-strand): . . . . . . 23438 CAACGGGATACGTAGGCGCCACAAGGGCTCGGTCATATATCTCGTAAATTCTATTCCCCC Q R D T - A P Q G L G H I S R K F Y S P N G I R R R H K G S V I Y L V N S I P P T G Y V G A T R A R S Y I S - I L F P . . . . . . 23378 CTTTCTACAATAGAAACTGGGACAGAATTTTGAGAGGGACTCAAAAATTCTCCAGAAGGA L S T I E T G T E F - E G L K N S P E G F L Q - K L G Q N F E R D S K I L Q K E P F Y N R N W D R I L R G T Q K F S R R . . . . . . 23318 ACCTTCTCTTCAGCGGATCAAACTAAAGACATTTCGAATTTGCGACTGGGACAGAATTTT T F S S A D Q T K D I S N L R L G Q N F P S L Q R I K L K T F R I C D W D R I F N L L F S G S N - R H F E F A T G T E F . . . . . . 23258 TTAGAAGATCTCAAAAATTCCGAGATCTGTTCGGTTACAATGGAAAGATGAACAAGATAC L E D L K N S E I C S V T M E R - T R Y - K I S K I P R S V R L Q W K D E Q D T F R R S Q K F R D L F G Y N G K M N K I . . . . . . 23198 TAAACTGGGACAGAAATTTTGAGGATGGCCTCAAAATTTCGTCATGGGACTTCCCCACAA - T G T E I L R M A S K F R H G T S P Q K L G Q K F - G W P Q N F V M G L P H K L N W D R N F E D G L K I S S W D F P T . . . . . . 23138 GTCTGGAATGCCTCTGAAATTCATTCGACAAGCGTCGGACTCAAAGAAGCTCGTTAAGCC V W N A S E I H S T S V G L K E A R - A S G M P L K F I R Q A S D S K K L V K P S L E C L - N S F D K R R T Q R S S L S . . . . . . 23078 TGACATGACATGACTTGGCATTGACTTTTTCGAGATACTATTTCTTAAAAAATTTCTTGC - H D M T W H - L F R D T I S - K I S C D M T - L G I D F F E I L F L K K F L A L T - H D L A L T F S R Y Y F L K N F L . . . . . . 23018 TTCTCTTAAAAATTTCCCTTTTATATTTCATCTGTTTTGGCATAAGATATTTTCTTATCT F S - K F P F Y I S S V L A - D I F L S S L K N F P F I F H L F W H K I F S Y L L L L K I S L L Y F I C F G I R Y F L I . . . . . . 22958 ATCAAGAGTCGAGAAATCGGGAAATCAACCGAGGACGTCAAGACAAGGAGCAAACAATCG I K S R E I G K S T E D V K T R S K Q S S R V E K S G N Q P R T S R Q G A N N R Y Q E S R N R E I N R G R Q D K E Q T I . . . . . . 22898 AAGGGATCGACACAGATCAGTATGTTTAAAACTGACAATTTTTCTGTGGATGCAGGTTTA K G S T Q I S M F K T D N F S V D A G L R D R H R S V C L K L T I F L W M Q V Y E G I D T D Q Y V - N - Q F F C G C R F . . . . 22838 TAGCTTCACTTCGAAATCGGCCGAATTCTTCCGACT - L H F E I G R I L P T S F T S K S A E F F R I A S L R N R P N S S D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-7_AGS-1_PPS_1 (23065 22805) (frame '2'; 261 bp, 87 residues) 1 LGIDFFEILF LKKFLASLKN FPFIFHLFWH KIFSYLSRVE KSGNQPRTSR QGANNRRDRH 61 RSVCLKLTIF LWMQVYSFTS KSAEFFR 3-phase translation of AGS-1 (+strand): . . . . . . 22803 AGTCGGAAGAATTCGGCCGATTTCGAAGTGAAGCTATAAACCTGCATCCACAGAAAAATT S R K N S A D F E V K L - T C I H R K I V G R I R P I S K - S Y K P A S T E K L S E E F G R F R S E A I N L H P Q K N . . . . . . 22863 GTCAGTTTTAAACATACTGATCTGTGTCGATCCCTTCGATTGTTTGCTCCTTGTCTTGAC V S F K H T D L C R S L R L F A P C L D S V L N I L I C V D P F D C L L L V L T C Q F - T Y - S V S I P S I V C S L S - . . . . . . 22923 GTCCTCGGTTGATTTCCCGATTTCTCGACTCTTGATAGATAAGAAAATATCTTATGCCAA V L G - F P D F S T L D R - E N I L C Q S S V D F P I S R L L I D K K I S Y A K R P R L I S R F L D S - - I R K Y L M P . . . . . . 22983 AACAGATGAAATATAAAAGGGAAATTTTTAAGAGAAGCAAGAAATTTTTTAAGAAATAGT N R - N I K G K F L R E A R N F L R N S T D E I - K G N F - E K Q E I F - E I V K Q M K Y K R E I F K R S K K F F K K - . . . . . . 23043 ATCTCGAAAAAGTCAATGCCAAGTCATGTCATGTCAGGCTTAACGAGCTTCTTTGAGTCC I S K K S M P S H V M S G L T S F F E S S R K S Q C Q V M S C Q A - R A S L S P Y L E K V N A K S C H V R L N E L L - V . . . . . . 23103 GACGCTTGTCGAATGAATTTCAGAGGCATTCCAGACTTGTGGGGAAGTCCCATGACGAAA D A C R M N F R G I P D L W G S P M T K T L V E - I S E A F Q T C G E V P - R N R R L S N E F Q R H S R L V G K S H D E . . . . . . 23163 TTTTGAGGCCATCCTCAAAATTTCTGTCCCAGTTTAGTATCTTGTTCATCTTTCCATTGT F - G H P Q N F C P S L V S C S S F H C F E A I L K I S V P V - Y L V H L S I V I L R P S S K F L S Q F S I L F I F P L . . . . . . 23223 AACCGAACAGATCTCGGAATTTTTGAGATCTTCTAAAAAATTCTGTCCCAGTCGCAAATT N R T D L G I F E I F - K I L S Q S Q I T E Q I S E F L R S S K K F C P S R K F - P N R S R N F - D L L K N S V P V A N . . . . . . 23283 CGAAATGTCTTTAGTTTGATCCGCTGAAGAGAAGGTTCCTTCTGGAGAATTTTTGAGTCC R N V F S L I R - R E G S F W R I F E S E M S L V - S A E E K V P S G E F L S P S K C L - F D P L K R R F L L E N F - V . . . . . . 23343 CTCTCAAAATTCTGTCCCAGTTTCTATTGTAGAAAGGGGGGAATAGAATTTACGAGATAT L S K F C P S F Y C R K G G I E F T R Y S Q N S V P V S I V E R G E - N L R D I P L K I L S Q F L L - K G G N R I Y E I . . . . 23403 ATGACCGAGCCCTTGTGGCGCCTACGTATCCCGTTG M T E P L W R L R I P L - P S P C G A Y V S R Y D R A L V A P T Y P V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 24855 23942 AGS-1 (24855 23942) SCR (e 0.888) Exon 1 24855 23942 ( 914 n); score: 0.888 PGS (24855 23942) SGN-U338284+ PGS (24794 24064) SGN-U325967+ 3-phase translation of AGS-1 (-strand): . . . . . . 24855 TTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGCTCACCTTGGCCATTTGTAGC F D K G A T S R T Q C Y E L T L A I C S L I R V P P H E L N A M S S P W P F V A - - G C H L T N S M L - A H L G H L - . . . . . . 24795 TTGGGGAATGGATGTCATCGGCCCTATAGAACCGGTCGCTTCCAATGGACACAGATTTAT L G N G C H R P Y R T G R F Q W T Q I Y W G M D V I G P I E P V A S N G H R F I L G E W M S S A L - N R S L P M D T D L . . . . . . 24735 TTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAAC F G C H R L F H Q M G G S S L L Q I G N L V A I D Y F T K W V E A A S Y K S V T F W L P S I I S P N G W K Q P L T N R - . . . . . . 24675 CAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGA Q E S G G R L C P Q Q S D L P I W S S R K K V V A D F V R N N L I C R F G V P E P R K W W P T L S A T I - S A D L E F Q . . . . . . 24615 ATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGA I H H H - - R C K S Q Q S S D E R D M - S I I T D N G A N L N S H L M K E I C E N P S S L I T V Q I S T V I - - K R Y V . . . . . . 24555 ACAATTTAAGATTATTCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGT T I - D Y S P K V N C L S P S N E R S C Q F K I I H R R S T A Y R P Q M N G A V N N L R L F T E G Q L L I A L K - T E L . . . . . . 24495 AGAGGCCGCCAACAAGAACATCAAGAAGATTCTGGGGAAAATGATTGACAAGCAGCGGGG R G R Q Q E H Q E D S G E N D - Q A A G E A A N K N I K K I L G K M I D K Q R G - R P P T R T S R R F W G K - L T S S G . . . . . . 24435 TTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAAC L A - N V A I C S T G L S N D G Q N I N W H E M L P Y A L L G Y R T T V R T S T V G M K C C H M L Y W V I E R R S E H Q . . . . . . 24375 TGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGA W G Y S I L A S I R N R S S R T C R S R G A T P Y L L V Y G T E A V V P V E V E L G L L H T C - Y T E Q K Q S Y L S K S . . . . . . 24315 GATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAA D T V T E D H P R S - A K - C - V G - Q I P S L R I I Q E A E L S N A E W V S K R Y R H - G S S K K L S - V M L S G L A . . . . . . 24255 ACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCCGTTTGCCATGGCCA T D - S T S L D - - K E D G C R L P W P R I D Q L A L I D E K R M V A V C H G Q N G L I N - P - L M K R G W L P F A M A . . . . . . 24195 GTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTAA V V - T K N D S R F S Q K S K S Q K F - L Y R Q R M T R A F H K R V R A R N F K S C I D K E - L A L F T K E - E P E I L . . . . . . 24135 AGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTT S W S V G S - A Y F S S S R R V Q R K V V G Q L V L K R I F P H Q D E Y K G K F K L V S W F L S V F F L I K T S T K E S . . . . . . 24075 CGCACCAAACTGGCAAGGTCCTTACATGGTCCGCAAAGTACTATCTGGAGGTGCTTTAGT R T K L A R S L H G P Q S T I W R C F S A P N W Q G P Y M V R K V L S G G A L V S H Q T G K V L T W S A K Y Y L E V L - . . . . . . 24015 CTTGTCAGAGATGGATGGCGCTGTATGGCCCAAACCTATCAACTCAGATGCTGTCAAGAG L V R D G W R C M A Q T Y Q L R C C Q E L S E M D G A V W P K P I N S D A V K R S C Q R W M A L Y G P N L S T Q M L S R . . 23955 ATATTACGTGTGAA I L R V Y Y V - D I T C E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-8_AGS-1_PPS_1 (24854 23943) (frame '2'; 909 bp, 303 residues) 1 LIRVPPHELN AMSSPWPFVA WGMDVIGPIE PVASNGHRFI LVAIDYFTKW VEAASYKSVT 61 KKVVADFVRN NLICRFGVPE SIITDNGANL NSHLMKEICE QFKIIHRRST AYRPQMNGAV 121 EAANKNIKKI LGKMIDKQRG WHEMLPYALL GYRTTVRTST GATPYLLVYG TEAVVPVEVE 181 IPSLRIIQEA ELSNAEWVSK RIDQLALIDE KRMVAVCHGQ LYRQRMTRAF HKRVRARNFK 241 VGQLVLKRIF PHQDEYKGKF APNWQGPYMV RKVLSGGALV LSEMDGAVWP KPINSDAVKR 301 YYV- 3-phase translation of AGS-1 (+strand): . . . . . . 23942 TTCACACGTAATATCTCTTGACAGCATCTGAGTTGATAGGTTTGGGCCATACAGCGCCAT F T R N I S - Q H L S - - V W A I Q R H S H V I S L D S I - V D R F G P Y S A I H T - Y L L T A S E L I G L G H T A P . . . . . . 24002 CCATCTCTGACAAGACTAAAGCACCTCCAGATAGTACTTTGCGGACCATGTAAGGACCTT P S L T R L K H L Q I V L C G P C K D L H L - Q D - S T S R - Y F A D H V R T L S I S D K T K A P P D S T L R T M - G P . . . . . . 24062 GCCAGTTTGGTGCGAACTTTCCTTTGTACTCGTCTTGATGAGGAAAAATACGCTTAAGAA A S L V R T F L C T R L D E E K Y A - E P V W C E L S F V L V L M R K N T L K N C Q F G A N F P L Y S S - - G K I R L R . . . . . . 24122 CCAACTGACCAACTTTAAAATTTCTGGCTCTTACTCTTTTGTGAAAAGCGCGAGTCATTC P T D Q L - N F W L L L F C E K R E S F Q L T N F K I S G S Y S F V K S A S H S T N - P T L K F L A L T L L - K A R V I . . . . . . 24182 TTTGTCTATACAACTGGCCATGGCAAACGGCAACCATCCTCTTTTCATCAATCAAGGCTA F V Y T T G H G K R Q P S S F H Q S R L L S I Q L A M A N G N H P L F I N Q G - L C L Y N W P W Q T A T I L F S S I K A . . . . . . 24242 GTTGATCAATCCGTTTGCTAACCCACTCAGCATTACTTAGCTCAGCTTCTTGGATGATCC V D Q S V C - P T Q H Y L A Q L L G - S L I N P F A N P L S I T - L S F L D D P S - S I R L L T H S A L L S S A S W M I . . . . . . 24302 TCAGTGACGGTATCTCGACTTCGACAGGTACGACTGCTTCTGTTCCGTATACTAGCAAGT S V T V S R L R Q V R L L L F R I L A S Q - R Y L D F D R Y D C F C S V Y - Q V L S D G I S T S T G T T A S V P Y T S K . . . . . . 24362 ATGGAGTAGCCCCAGTTGATGTTCTGACCGTCGTTCGATAACCCAGTAGAGCATATGGCA M E - P Q L M F - P S F D N P V E H M A W S S P S - C S D R R S I T Q - S I W Q Y G V A P V D V L T V V R - P S R A Y G . . . . . . 24422 ACATTTCATGCCAACCCCGCTGCTTGTCAATCATTTTCCCCAGAATCTTCTTGATGTTCT T F H A N P A A C Q S F S P E S S - C S H F M P T P L L V N H F P Q N L L D V L N I S C Q P R C L S I I F P R I F L M F . . . . . . 24482 TGTTGGCGGCCTCTACAGCTCCGTTCATTTGAGGGCGATAAGCAGTTGACCTTCGGTGAA C W R P L Q L R S F E G D K Q L T F G E V G G L Y S S V H L R A I S S - P S V N L L A A S T A P F I - G R - A V D L R - . . . . . . 24542 TAATCTTAAATTGTTCACATATCTCTTTCATCAGATGACTGTTGAGATTTGCACCGTTAT - S - I V H I S L S S D D C - D L H R Y N L K L F T Y L F H Q M T V E I C T V I I I L N C S H I S F I R - L L R F A P L . . . . . . 24602 CAGTGATGATGGATTCTGGAACTCCAAATCGGCAGATCAGATTGTTGCGGACAAAGTCGG Q - - W I L E L Q I G R S D C C G Q S R S D D G F W N S K S A D Q I V A D K V G S V M M D S G T P N R Q I R L L R T K S . . . . . . 24662 CCACCACTTTCTTGGTTACCGATTTGTAAGAGGCTGCTTCCACCCATTTGGTGAAATAAT P P L S W L P I C K R L L P P I W - N N H H F L G Y R F V R G C F H P F G E I I A T T F L V T D L - E A A S T H L V K - . . . . . . 24722 CGATGGCAACCAAAATAAATCTGTGTCCATTGGAAGCGACCGGTTCTATAGGGCCGATGA R W Q P K - I C V H W K R P V L - G R - D G N Q N K S V S I G S D R F Y R A D D S M A T K I N L C P L E A T G S I G P M . . . . . . 24782 CATCCATTCCCCAAGCTACAAATGGCCAAGGTGAGCTCATAGCATTGAGTTCGTGAGGTG H P F P K L Q M A K V S S - H - V R E V I H S P S Y K W P R - A H S I E F V R W T S I P Q A T N G Q G E L I A L S S - G . . 24842 GCACCCTTATCAAA A P L S H P Y Q G T L I K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-8_AGS-1_PPS_1 (24531 24815) (frame '2'; 282 bp, 94 residues) 1 PSVNNLKLFT YLFHQMTVEI CTVISDDGFW NSKSADQIVA DKVGHHFLGY RFVRGCFHPF 61 GEIIDGNQNK SVSIGSDRFY RADDIHSPSY KWPR- >C08HBa0235H18.1+_PGL-8_AGS-1_PPS_2 (24036 24242) (frame '2'; 204 bp, 68 residues) 1 YFADHVRTLP VWCELSFVLV LMRKNTLKNQ LTNFKISGSY SFVKSASHSL SIQLAMANGN 61 HPLFINQG- PGL 9 (+ strand): 25459 26396 AGS-1 (25459 25775,25891 26396) SCR (e 0.833 d 0.000 a 0.000,e 0.795) Exon 1 25459 25775 ( 317 n); score: 0.833 Intron 1 25776 25890 ( 115 n); Pd: 0.000 Pa: 0.000 Exon 2 25891 26396 ( 506 n); score: 0.795 PGS (25459 25775,25891 26396) SGN-U342328+ 3-phase translation of AGS-1 (+strand): . . . . . . 25459 AGGTCTGAATCTCCAATAACCAGTAACTCGTAAACATTCATGTCAACGGCCATTTTCAAA R S E S P I T S N S - T F M S T A I F K G L N L Q - P V T R K H S C Q R P F S N V - I S N N Q - L V N I H V N G H F Q . . . . . . 25519 CCGAGAATGCAAGCTTCATACTCAGCCATGTTGTTTGTGCAGTTGAACCGTAGCTTAGCC P R M Q A S Y S A M L F V Q L N R S L A R E C K L H T Q P C C L C S - T V A - P T E N A S F I L S H V V C A V E P - L S . . . . . . 25579 GCCATAGGATAGTGCTGACCAGATTCTGATACCAAGACTGCTCCAACACCTTTACCCTGG A I G - C - P D S D T K T A P T P L P W P - D S A D Q I L I P R L L Q H L Y P G R H R I V L T R F - Y Q D C S N T F T L . . . . . . 25639 TGATTCACCGCTCCATCAAAGAATAATCTCCAACCTGGATAAACTTCAGAGATATCTTCA - F T A P S K N N L Q P G - T S E I S S D S P L H Q R I I S N L D K L Q R Y L H V I H R S I K E - S P T W I N F R D I F . . . . . . 25699 CCCACAAATGACACTTCTTCATCGTGAAAATATGTCTTGAGAGGTTCATACTCTTCATCA P T N D T S S S - K Y V L R G S Y S S S P Q M T L L H R E N M S - E V H T L H Q T H K - H F F I V K I C L E R F I L F I . . : . . . . 25759 ACGGGATTTTCCGCAAG : ATATACTTCAATGGATCCATTCTGGAGATAAGATATGTAGTAT T G F S A R : Y T S M D P F W R - D M - Y R D F P Q : D I L Q W I H S G D K I C S I N G I F R K : I Y F N G S I L E I R Y V V . . . . . . 25934 ACGACGACAAATAGTGCCTCAGCTTCTGGGCAAGCCATGTCAGAGCACAGCATGTTCTTT T T T N S A S A S G Q A M S E H S M F F R R Q I V P Q L L G K P C Q S T A C S F Y D D K - C L S F W A S H V R A Q H V L . . . . . . 25994 CCAGCAAAGTGTAACGAGACTCGTACGGAGTAAACTTCTTGCTGATGTAGTAGATAGCTT P A K C N E T R T E - T S C - C S R - L Q Q S V T R L V R S K L L A D V V D S F S S K V - R D S Y G V N F L L M - - I A . . . . . . 26054 TTTCCTTCTTCCCTGTCTCGTCGTGTTGACCAAGTACACATCCAAAGACGTTATCCGAGA F P S S L S R R V D Q V H I Q R R Y P R F L L P C L V V L T K Y T S K D V I R D F S F F P V S S C - P S T H P K T L S E . . . . . . 26114 CAGACAAATATAGCAACAAAGGACTCCCTTCTCGCGGAGGAACCAATACTGGTGGGTTAG Q T N I A T K D S L L A E E P I L V G - R Q I - Q Q R T P F S R R N Q Y W W V R T D K Y S N K G L P S R G G T N T G G L . . . . . . 26174 ACAAGTAGCTCTTGATAGCGTCGAAAGCGGTCTGGCACTCCTCAGTCCACTTAGTTGGGG T S S S - - R R K R S G T P Q S T - L G Q V A L D S V E S G L A L L S P L S W G D K - L L I A S K A V W H S S V H L V G . . . . . . 26234 CATCTTTCTTCAGCAACTTGAAGATAGGCTCACATACCACCGTCGATTGTGCTATAAAAC H L S S A T - R - A H I P P S I V L - N I F L Q Q L E D R L T Y H R R L C Y K T A S F F S N L K I G S H T T V D C A I K . . . . . . 26294 GGCTGATATAGTTTAACCTCCCTAAGAAGCTCATCACCTCTTTTCTCGTCTTCGGCGGAG G - Y S L T S L R S S S P L F S S S A E A D I V - P P - E A H H L F S R L R R R R L I - F N L P K K L I T S F L V F G G . . . . . 26354 GTAACTCCTGAATTGCTTTGATCTTGGAAGGGTCGAGCTCAAT V T P E L L - S W K G R A Q - L L N C F D L G R V E L N G N S - I A L I L E G S S S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-9_AGS-1_PPS_1 (25739 25775,25891 26126) (frame '2'; 270 bp, 90 residues) 1 EVHTLHQRDF PQDILQWIHS GDKICSIRRQ IVPQLLGKPC QSTACSFQQS VTRLVRSKLL 61 ADVVDSFFLL PCLVVLTKYT SKDVIRDRQI - PGL 10 (+ strand): 30942 32171 AGS-1 (30942 31628) SCR (e 0.948) Exon 1 30942 31628 ( 687 n); score: 0.948 PGS (30942 31628) SGN-U345356+ 3-phase translation of AGS-1 (+strand): . . . . . . 30942 AAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAAGGAAGTAGACCGGAGGTCTTGCAT K A G S E L D L C L M K G S R P E V L H R L V L S W I Y V - - K E V D R R S C I G W F - V G S M F D E R K - T G G L A . . . . . . 31002 CAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTT Q Q Y - Y Q I Q V E A H P V S V A F Q L S N I S T K S R W R R I L S P L H F N F S A I L V P N P G G G A S C L R C I S T . . . . . . 31062 TCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCGTTCTGTTCCACTACAGTGG S F Q Q S V A S V A - S I R S V P L Q W H F S N L L H Q L H D Q F V L F H Y S G F I S A I C C I S C M I N S F C S T T V . . . . . . 31122 GCTGAGCCACCACAACGTCTGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTATTT A E P P Q R L - D A L R H C C L P - L F L S H H N V C K T P F V I V V S H N Y F G - A T T T S V R R P S S L L S P I T I . . . . . . 31182 TTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTTGACCTGGTGAAGT F L C L N L I E G R N L - D L L T W - S S F V - I - S R E G I C R T F - P G E V F P L S E F D R G K E S V G P F D L V K . . . . . . 31242 AAGAATGATCTGCCAGCTTTATCGACACAGATCAGTAAAAGGTACCTGAGAGGTAGAAAC K N D L P A L S T Q I S K R Y L R G R N R M I C Q L Y R H R S V K G T - E V E T - E - S A S F I D T D Q - K V P E R - K . . . . . . 31302 AACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATA N S K A N L L V H I Q S T K C I I S H I T Q R Q I C - C I S R V Q N A - Y R T - Q L K G K F V S A Y P E Y K M H N I A H . . . . . . 31362 AAACAGATAAGCACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGG K Q I S T Q V V L F E D I L T H E - G R N R - A H K S F C L R I S - P T N K D G K T D K H T S R F V - G Y L N P R I R T . . . . . . 31422 ATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGAGATATCTTGGGAAATCTGAATC I Y I L N K Q E F V C L E I S W E I - I Y I F - T N R N L F V W R Y L G K S E S D I Y F E Q T G I C L F G D I L G N L N . . . . . . 31482 ACGTTGAGCTATGGTCTTCTTGCAGCTGCTTTGCGACGTCTGTTGATCTTATCTTCGTAT T L S Y G L L A A A L R R L L I L S S Y R - A M V F L Q L L C D V C - S Y L R I H V E L W S S C S C F A T S V D L I F V . . . . . . 31542 CTCCGAAACATGGAGGAGAATGAAAATTTTCTGTGATAGGGGCCGGGCCGGGAAGGCTGC L R N M E E N E N F L - - G P G R E G C S E T W R R M K I F C D R G R A G K A A S P K H G G E - K F S V I G A G P G R L . . . 31602 CTACGTATCTCACGGGGAGAATTCAGG L R I S R G E F R Y V S H G E N S P T Y L T G R I Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-10_AGS-1_PPS_1 (30976 31194) (frame '2'; 216 bp, 72 residues) 1 KEVDRRSCIS NISTKSRWRR ILSPLHFNFH FSNLLHQLHD QFVLFHYSGL SHHNVCKTPF 61 VIVVSHNYFS FV- 3-phase translation of AGS-1 (-strand): . . . . . . 31628 CCTGAATTCTCCCCGTGAGATACGTAGGCAGCCTTCCCGGCCCGGCCCCTATCACAGAAA P E F S P - D T - A A F P A R P L S Q K L N S P R E I R R Q P S R P G P Y H R K - I L P V R Y V G S L P G P A P I T E . . . . . . 31568 ATTTTCATTCTCCTCCATGTTTCGGAGATACGAAGATAAGATCAACAGACGTCGCAAAGC I F I L L H V S E I R R - D Q Q T S Q S F S F S S M F R R Y E D K I N R R R K A N F H S P P C F G D T K I R S T D V A K . . . . . . 31508 AGCTGCAAGAAGACCATAGCTCAACGTGATTCAGATTTCCCAAGATATCTCCAAACAAAC S C K K T I A Q R D S D F P R Y L Q T N A A R R P - L N V I Q I S Q D I S K Q T Q L Q E D H S S T - F R F P K I S P N K . . . . . . 31448 AAATTCCTGTTTGTTCAAAATATATATCCGTCCTTATTCGTGGGTTAAGATATCCTCAAA K F L F V Q N I Y P S L F V G - D I L K N S C L F K I Y I R P Y S W V K I S S N Q I P V C S K Y I S V L I R G L R Y P Q . . . . . . 31388 CAAAACGACTTGTGTGCTTATCTGTTTTATGTGCGATATTATGCATTTTGTACTCTGGAT Q N D L C A Y L F Y V R Y Y A F C T L D K T T C V L I C F M C D I M H F V L W I T K R L V C L S V L C A I L C I L Y S G . . . . . . 31328 ATGCACTAACAAATTTGCCTTTGAGTTGTTTCTACCTCTCAGGTACCTTTTACTGATCTG M H - Q I C L - V V S T S Q V P F T D L C T N K F A F E L F L P L R Y L L L I C Y A L T N L P L S C F Y L S G T F Y - S . . . . . . 31268 TGTCGATAAAGCTGGCAGATCATTCTTACTTCACCAGGTCAAAAGGTCCTACAGATTCCT C R - S W Q I I L T S P G Q K V L Q I P V D K A G R S F L L H Q V K R S Y R F L V S I K L A D H S Y F T R S K G P T D S . . . . . . 31208 TCCCTCGATCAAATTCAGACAAAGGAAAAATAGTTATGGGAGACAACAATGACGAAGGGC S L D Q I Q T K E K - L W E T T M T K G P S I K F R Q R K N S Y G R Q Q - R R A F P R S N S D K G K I V M G D N N D E G . . . . . . 31148 GTCTTACAGACGTTGTGGTGGCTCAGCCCACTGTAGTGGAACAGAACGAATTGATCATGC V L Q T L W W L S P L - W N R T N - S C S Y R R C G G S A H C S G T E R I D H A R L T D V V V A Q P T V V E Q N E L I M . . . . . . 31088 AACTGATGCAACAGATTGCTGAAATGAAAGTTGAAATGCAACGGAGACAGGATGCGCCTC N - C N R L L K - K L K C N G D R M R L T D A T D C - N E S - N A T E T G C A S Q L M Q Q I A E M K V E M Q R R Q D A P . . . . . . 31028 CACCTGGATTTGGTACTAATATTGCTGATGCAAGACCTCCGGTCTACTTCCTTTCATCAA H L D L V L I L L M Q D L R S T S F H Q T W I W Y - Y C - C K T S G L L P F I K P P G F G T N I A D A R P P V Y F L S S . . . 30968 ACATAGATCCAACTCAGAACCAGCCTT T - I Q L R T S L H R S N S E P A N I D P T Q N Q P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-10_AGS-1_PPS_2 (31489 31157) (frame '2'; 330 bp, 110 residues) 1 LNVIQISQDI SKQTNSCLFK IYIRPYSWVK ISSNKTTCVL ICFMCDIMHF VLWICTNKFA 61 FELFLPLRYL LLICVDKAGR SFLLHQVKRS YRFLPSIKFR QRKNSYGRQQ - >C08HBa0235H18.1-_PGL-10_AGS-1_PPS_1 (31272 30943) (frame '0'; 330 bp, 110 residues) 1 SVSIKLADHS YFTRSKGPTD SFPRSNSDKG KIVMGDNNDE GRLTDVVVAQ PTVVEQNELI 61 MQLMQQIAEM KVEMQRRQDA PPPGFGTNIA DARPPVYFLS SNIDPTQNQP AGS-2 (31775 32171) SCR (e 0.967) Exon 1 31775 32171 ( 397 n); score: 0.967 PGS (31775 32171) SGN-U346850+ 3-phase translation of AGS-2 (+strand): . . . . . . 31775 TGCAGTCGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAATCACTTC C S R K W R L V D D F F F I I L L N H F A V E N G G L - T I S S S S S S S I T S Q S K M E A C R R F L L H H P P Q S L . . . . . . 31835 ATGGCCGGGGCCACTGTTGCCTGTTCCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGG M A G A T V A C S L I T G E V F S A L W W P G P L L P V P - S R A R Y F P P F G H G R G H C C L F P D H G R G I F R P L . . . . . . 31895 GTCGCTATGGGTTGCCAATTCCTCGTCGAGCGCCGTGCTTCTGTCCAACAACACAGCAGT V A M G C Q F L V E R R A S V Q Q H S S S L W V A N S S S S A V L L S N N T A V G R Y G L P I P R R A P C F C P T T Q Q . . . . . . 31955 CTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTT L D I Y L R L S R L S F V Y L Q T K Q V S I S I F A S L A F P S C I S K R S K F S R Y L S S P L S P F L R V S P N E A S . . . . . . 32015 CAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGA Q P F P - A F G F H L N L L L S L Y L - N L F L R L S V S I S T S F F L F I C D S T F S L G F R F P S Q P P S F S L S V . . . . . . 32075 CGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTAC R Q I F I Q C C D R S F V D R R G R V Y A R S S S N V V T A A L - I A V V A S T T P D L H P M L - P Q L C R S P W S R L . . . . 32135 TTTGAGTCCTTCTTCCTTAACCTTCTGAATCTCTCGA F E S F F L N L L N L S L S P S S L T F - I S R L - V L L P - P S E S L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-10_AGS-2_PPS_1 (31777 32100) (frame '0'; 321 bp, 107 residues) 1 QSKMEACRRF LLHHPPQSLH GRGHCCLFPD HGRGIFRPLG RYGLPIPRRA PCFCPTTQQS 61 RYLSSPLSPF LRVSPNEASS TFSLGFRFPS QPPSFSLSVT PDLHPML- 3-phase translation of AGS-2 (-strand): . . . . . . 32171 TCGAGAGATTCAGAAGGTTAAGGAAGAAGGACTCAAAGTAGACGCGACCACGGCGATCTA S R D S E G - G R R T Q S R R D H G D L R E I Q K V K E E G L K V D A T T A I Y E R F R R L R K K D S K - T R P R R S . . . . . . 32111 CAAAGCTGCGGTCACAACATTGGATGAAGATCTGGCGTCACAGATAAAGAGAAAGAAGGA Q S C G H N I G - R S G V T D K E K E G K A A V T T L D E D L A S Q I K R K K E T K L R S Q H W M K I W R H R - R E R R . . . . . . 32051 GGTTGAGATGGAAACCGAAAGCCTAAGGAAAAGGTTGAACTTGCTTCGTTTGGAGATACA G - D G N R K P K E K V E L A S F G D T V E M E T E S L R K R L N L L R L E I H R L R W K P K A - G K G - T C F V W R Y . . . . . . 31991 CGAAGGAAAGGCGAGAGAGGCGAAGATAGATATCGAGACTGCTGTGTTGTTGGACAGAAG R R K G E R G E D R Y R D C C V V G Q K E G K A R E A K I D I E T A V L L D R S T K E R R E R R R - I S R L L C C W T E . . . . . . 31931 CACGGCGCTCGACGAGGAATTGGCAACCCATAGCGACCCAAAGGGCGGAAAATACCTCGC H G A R R G I G N P - R P K G R K I P R T A L D E E L A T H S D P K G G K Y L A A R R S T R N W Q P I A T Q R A E N T S . . . . . . 31871 CCGTGATCAGGGAACAGGCAACAGTGGCCCCGGCCATGAAGTGATTGAGGAGGATGATGA P - S G N R Q Q W P R P - S D - G G - - R D Q G T G N S G P G H E V I E E D D E P V I R E Q A T V A P A M K - L R R M M . . . . 31811 AGAAGAAATCGTCTACAAGCCTCCATTTTCGACTGCA R R N R L Q A S I F D C E E I V Y K P P F S T A K K K S S T S L H F R L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-10_AGS-2_PPS_1 (32170 31775) (frame '2'; 396 bp, 132 residues) 1 REIQKVKEEG LKVDATTAIY KAAVTTLDED LASQIKRKKE VEMETESLRK RLNLLRLEIH 61 EGKAREAKID IETAVLLDRS TALDEELATH SDPKGGKYLA RDQGTGNSGP GHEVIEEDDE 121 EEIVYKPPFS TA PGL 11 (- strand): 36411 34280 AGS-1 (36411 36387,36273 36256,35480 35476,34737 34280) SCR (e 0.840 d 0.000 a 0.735,e 0.722 d 0.000 a 0.998,e 0.600 d 0.000 a 0.982,e 0.755) Exon 1 36411 36387 ( 25 n); score: 0.840 Intron 1 36386 36274 ( 113 n); Pd: 0.000 Pa: 0.735 Exon 2 36273 36256 ( 18 n); score: 0.722 Intron 2 36255 35481 ( 775 n); Pd: 0.000 Pa: 0.998 Exon 3 35480 35476 ( 5 n); score: 0.600 Intron 3 35475 34738 ( 738 n); Pd: 0.000 Pa: 0.982 Exon 4 34737 34280 ( 458 n); score: 0.755 PGS (36411 36387,36273 36256,35480 35476,34737 34280) SGN-U321902+ 3-phase translation of AGS-1 (-strand): . . . : . . : : . 36411 TGTTTATTCTCTATAATGTATTTAT : GCCATCTTTATCTTGGTG : ATTAG : ATTTTTAAACTG C L F S I M Y L : C H L Y L G : D - : I F K L V Y S L - C I Y : A I F I L V : I R : F L N C F I L Y N V F M : P S L S W - : L : D F - T . . . . . . 34725 CTGCATACATAGCATACATACTTCCGTCAAACGACACTTTTTTACATTTCCACTAAAGGA L H T - H T Y F R Q T T L F Y I S T K G C I H S I H T S V K R H F F T F P L K D A A Y I A Y I L P S N D T F L H F H - R . . . . . . 34665 CGATTATGCGGGTTCGCAGTCGTTCGTTAACCAAAAATCTTCTCGGGGCACCCTGACGAG R L C G F A V V R - P K I F S G H P D E D Y A G S Q S F V N Q K S S R G T L T S T I M R V R S R S L T K N L L G A P - R . . . . . . 34605 TGTAGTTGATTACTTGATAGTCAACGATCGTTAATTGTTCCAGCCCAAGTAGTCCGCTTG C S - L L D S Q R S L I V P A Q V V R L V V D Y L I V N D R - L F Q P K - S A W V - L I T - - S T I V N C S S P S S P L . . . . . . 34545 GGTTACCCATTCCACTCTAAATACAACCCACTCTTAGTCAAACTAGGATAGAGCGAAACC G Y P F H S K Y N P L L V K L G - S E T V T H S T L N T T H S - S N - D R A K P G L P I P L - I Q P T L S Q T R I E R N . . . . . . 34485 AAATCCCGAAAATAGCGCATTGGCCTAAGATGACCCGACACCCAAGGAGTGTCGGGCCCA K S R K - R I G L R - P D T Q G V S G P N P E N S A L A - D D P T P K E C R A H Q I P K I A H W P K M T R H P R S V G P . . . . . . 34425 TTAGAAAAGTCCACCTTGAGTCCAAAGAGCCTGCGGCTCGATAGGACGCTCATGTTTGTT L E K S T L S P K S L R L D R T L M F V - K S P P - V Q R A C G S I G R S C L L I R K V H L E S K E P A A R - D A H V C . . . . . . 34365 GTTTAAATTTGAAGGATGTATTGCGTGTTTAACGAGTTGTTGTATCGGGGGGATTGAAAA V - I - R M Y C V F N E L L Y R G D - K F K F E G C I A C L T S C C I G G I E N C L N L K D V L R V - R V V V S G G L K . . . 34305 TTAACTAGTTGTATGTTTTTGTAGAT L T S C M F L - - L V V C F C R I N - L Y V F V D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-11_AGS-1_PPS_1 (36395 36387,36273 36256,35480 35476,34737 34572) (frame '2'; 195 bp, 65 residues) 1 CIYAIFILVI RFLNCCIHSI HTSVKRHFFT FPLKDDYAGS QSFVNQKSSR GTLTSVVDYL 61 IVNDR- AGS-2 (35354 34835) SCR (e 0.784) Exon 1 35354 34835 ( 520 n); score: 0.784 PGS (35354 34835) SGN-U332003+ PGS (35186 34835) SGN-U315283+ 3-phase translation of AGS-2 (-strand): . . . . . . 35354 TTATCTTATTTTGTTTTCAATGCCGTTAGCTTAGGATTAGGAAACTCCAAACCCTCATCG L S Y F V F N A V S L G L G N S K P S S Y L I L F S M P L A - D - E T P N P H R I L F C F Q C R - L R I R K L Q T L I . . . . . . 35294 AACGCCTGTTATTTTATCAAACCTAAAAAATTTTAAAACTAACTTCTAAATGATAAATTG N A C Y F I K P K K F - N - L L N D K L T P V I L S N L K N F K T N F - M I N C E R L L F Y Q T - K I L K L T S K - - I . . . . . . 35234 TTTCAAATTCGTAAGGCTTGTTTAGATAAAACCTTGAGTAAGCTTAACTTTGAAATGGTT F Q I R K A C L D K T L S K L N F E M V F K F V R L V - I K P - V S L T L K W F V S N S - G L F R - N L E - A - L - N G . . . . . . 35174 TCGTAAACTGGCAAGATAAACAATAAATATTTCAAAATTGGCTAAGTTTGGCTAAGTAAG S - T G K I N N K Y F K I G - V W L S K R K L A R - T I N I S K L A K F G - V S F V N W Q D K Q - I F Q N W L S L A K - . . . . . . 35114 TCATGTTAAAAGTTCAAATAAATTTGCAAAGGTTAAAAATAAAAATAATCAAATAGTTAA S C - K F K - I C K G - K - K - S N S - H V K S S N K F A K V K N K N N Q I V N V M L K V Q I N L Q R L K I K I I K - L . . . . . . 35054 TCATTGGAAAACCGTAAGTTAACGGAGTGTTTTGGGTGCCTTACACCTTCCTAAGATACT S L E N R K L T E C F G C L T P S - D T H W K T V S - R S V L G A L H L P K I L I I G K P - V N G V F W V P Y T F L R Y . . . . . . 34994 AATAGGAATCCCGAACCCTTAAAATGTTTCAAAACAATTTTTTCTGTTTAAGTTGTTTAG N R N P E P L K C F K T I F S V - V V - I G I P N P - N V S K Q F F L F K L F R - - E S R T L K M F Q N N F F C L S C L . . . . . . 34934 AAACGAAGTTTTCTTGATTTTTCTTAAAAATTAAGTGGCGACTCCTAAAAGTCTAAAAAC K R S F L D F S - K L S G D S - K S K N N E V F L I F L K N - V A T P K S L K T E T K F S - F F L K I K W R L L K V - K . . . . 34874 AAACTCTTTTCGAAAATCACCACCCTTTTTCGATAAAACA K L F S K I T T L F R - N N S F R K S P P F F D K T Q T L F E N H H P F S I K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 34835 TGTTTTATCGAAAAAGGGTGGTGATTTTCGAAAAGAGTTTGTTTTTAGACTTTTAGGAGT C F I E K G W - F S K R V C F - T F R S V L S K K G G D F R K E F V F R L L G V F Y R K R V V I F E K S L F L D F - E . . . . . . 34895 CGCCACTTAATTTTTAAGAAAAATCAAGAAAACTTCGTTTCTAAACAACTTAAACAGAAA R H L I F K K N Q E N F V S K Q L K Q K A T - F L R K I K K T S F L N N L N R K S P L N F - E K S R K L R F - T T - T E . . . . . . 34955 AAATTGTTTTGAAACATTTTAAGGGTTCGGGATTCCTATTAGTATCTTAGGAAGGTGTAA K L F - N I L R V R D S Y - Y L R K V - N C F E T F - G F G I P I S I L G R C K K I V L K H F K G S G F L L V S - E G V . . . . . . 35015 GGCACCCAAAACACTCCGTTAACTTACGGTTTTCCAATGATTAACTATTTGATTATTTTT G T Q N T P L T Y G F P M I N Y L I I F A P K T L R - L T V F Q - L T I - L F L R H P K H S V N L R F S N D - L F D Y F . . . . . . 35075 ATTTTTAACCTTTGCAAATTTATTTGAACTTTTAACATGACTTACTTAGCCAAACTTAGC I F N L C K F I - T F N M T Y L A K L S F L T F A N L F E L L T - L T - P N L A Y F - P L Q I Y L N F - H D L L S Q T - . . . . . . 35135 CAATTTTGAAATATTTATTGTTTATCTTGCCAGTTTACGAAACCATTTCAAAGTTAAGCT Q F - N I Y C L S C Q F T K P F Q S - A N F E I F I V Y L A S L R N H F K V K L P I L K Y L L F I L P V Y E T I S K L S . . . . . . 35195 TACTCAAGGTTTTATCTAAACAAGCCTTACGAATTTGAAACAATTTATCATTTAGAAGTT Y S R F Y L N K P Y E F E T I Y H L E V T Q G F I - T S L T N L K Q F I I - K L L L K V L S K Q A L R I - N N L S F R S . . . . . . 35255 AGTTTTAAAATTTTTTAGGTTTGATAAAATAACAGGCGTTCGATGAGGGTTTGGAGTTTC S F K I F - V - - N N R R S M R V W S F V L K F F R F D K I T G V R - G F G V S - F - N F L G L I K - Q A F D E G L E F . . . . 35315 CTAATCCTAAGCTAACGGCATTGAAAACAAAATAAGATAA L I L S - R H - K Q N K I - S - A N G I E N K I R - P N P K L T A L K T K - D Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (35376 35259,35157 34878) SCR (e 0.716 d 0.000 a 0.000,e 0.773) Exon 1 35376 35259 ( 118 n); score: 0.716 Intron 1 35258 35158 ( 101 n); Pd: 0.000 Pa: 0.000 Exon 2 35157 34878 ( 280 n); score: 0.773 PGS (35376 35259,35157 34878) SGN-U344475+ 3-phase translation of AGS-3 (-strand): . . . . . . 35376 TATCCTTCTCTTTACTATTTGCTTATCTTATTTTGTTTTCAATGCCGTTAGCTTAGGATT Y P S L Y Y L L I L F C F Q C R - L R I I L L F T I C L S Y F V F N A V S L G L S F S L L F A Y L I L F S M P L A - D . . . . . . : 35316 AGGAAACTCCAAACCCTCATCGAACGCCTGTTATTTTATCAAACCTAAAAAATTTTAA : AA R K L Q T L I E R L L F Y Q T - K I L : K G N S K P S S N A C Y F I K P K K F - : K - E T P N P H R T P V I L S N L K N F K : . . . . . . 35155 ACAATAAATATTTCAAAATTGGCTAAGTTTGGCTAAGTAAGTCATGTTAAAAGTTCAAAT T I N I S K L A K F G - V S H V K S S N Q - I F Q N W L S L A K - V M L K V Q I N N K Y F K I G - V W L S K S C - K F K . . . . . . 35095 AAATTTGCAAAGGTTAAAAATAAAAATAATCAAATAGTTAATCATTGGAAAACCGTAAGT K F A K V K N K N N Q I V N H W K T V S N L Q R L K I K I I K - L I I G K P - V - I C K G - K - K - S N S - S L E N R K . . . . . . 35035 TAACGGAGTGTTTTGGGTGCCTTACACCTTCCTAAGATACTAATAGGAATCCCGAACCCT - R S V L G A L H L P K I L I G I P N P N G V F W V P Y T F L R Y - - E S R T L L T E C F G C L T P S - D T N R N P E P . . . . . . 34975 TAAAATGTTTCAAAACAATTTTTTCTGTTTAAGTTGTTTAGAAACGAAGTTTTCTTGATT - N V S K Q F F L F K L F R N E V F L I K M F Q N N F F C L S C L E T K F S - F L K C F K T I F S V - V V - K R S F L D . . . . 34915 TTTCTTAAAAATTAAGTGGCGACTCCTAAAAGTCTAAA F L K N - V A T P K S L F L K I K W R L L K V - F S - K L S G D S - K S K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (- strand): 41656 40858 AGS-1 (41656 40858) SCR (e 0.784) Exon 1 41656 40858 ( 799 n); score: 0.784 PGS (41170 40858) SGN-U333796+ PGS (41614 40927) SGN-U314100+ PGS (41499 40930) SGN-U333798+ PGS (41641 40933) SGN-U312653+ PGS (41598 40933) SGN-U333797+ PGS (41656 40947) SGN-U312654+ PGS (41363 40947) SGN-U312655+ 3-phase translation of AGS-1 (-strand): . . . . . . 41656 ATATCAAAAATAAACAAAAATATGTACACAAACATGGGCTACTTGACATCTTCTTTTATT I S K I N K N M Y T N M G Y L T S S F I Y Q K - T K I C T Q T W A T - H L L L F I K N K Q K Y V H K H G L L D I F F Y . . . . . . 41596 TTCTTCTTCCTTGCTTTAGTGACTTACACTTATGCTGCCACTATCGAGGTACGCAACAAT F F F L A L V T Y T Y A A T I E V R N N S S S L L - - L T L M L P L S R Y A T I F L L P C F S D L H L C C H Y R G T Q Q . . . . . . 41536 TGTCCCTACACCGTTTGGGCAGCATCGACCCCGATAGGCGGTGGTCGACGTCTCGATCGA C P Y T V W A A S T P I G G G R R L D R V P T P F G Q H R P R - A V V D V S I E L S L H R L G S I D P D R R W S T S R S . . . . . . 41476 GGCCAAACATGGGTCATCAATGCGCCGAGGGGCACTAAGATGGCACGTATATGGGGTCGT G Q T W V I N A P R G T K M A R I W G R A K H G S S M R R G A L R W H V Y G V V R P N M G H Q C A E G H - D G T Y M G S . . . . . . 41416 ACTAATTGCAATTTTAATGGTGCTGGTAGAGGTTCATGCCAAACTGGTGATTGTGGTGGG T N C N F N G A G R G S C Q T G D C G G L I A I L M V L V E V H A K L V I V V G Y - L Q F - W C W - R F M P N W - L W W . . . . . . 41356 GTCCTACACTGTACCGGGTGGGGCAAACCCCCAAACACCCTAGCTGAATATGCTTTGGAC V L H C T G W G K P P N T L A E Y A L D S Y T V P G G A N P Q T P - L N M L W T G P T L Y R V G Q T P K H P S - I C F G . . . . . . 41296 CAATTCAGCAACCTAGATTTCTGGGACATTTCTTTGGTTGACGGATTTAATATACCGATG Q F S N L D F W D I S L V D G F N I P M N S A T - I S G T F L W L T D L I Y R - P I Q Q P R F L G H F F G - R I - Y T D . . . . . . 41236 ACTTTCGCCCCAACCAATCCTAGTGGAGGAAAATGCCATGCAATTCATTGCACGGCTAAT T F A P T N P S G G K C H A I H C T A N L S P Q P I L V E E N A M Q F I A R L I D F R P N Q S - W R K M P C N S L H G - . . . . . . 41176 ATAAACGGTGAATGCCCTAGTCCACTTAGGGTACCCGGAGGATGTAACAACCCTTGTACC I N G E C P S P L R V P G G C N N P C T - T V N A L V H L G Y P E D V T T L V P Y K R - M P - S T - G T R R M - Q P L Y . . . . . . 41116 ACGTTCGGAGGACAACAATATTGTTGTACTCAAGGCCCATGTGGTCCTACAAAATTTTCG T F G G Q Q Y C C T Q G P C G P T K F S R S E D N N I V V L K A H V V L Q N F R H V R R T T I L L Y S R P M W S Y K I F . . . . . . 41056 AGATTTTTCAAACAAAGGTGCCCTAATGCGTATAGCTACCCTCAAGATGATCCTACTAGC R F F K Q R C P N A Y S Y P Q D D P T S D F S N K G A L M R I A T L K M I L L A E I F Q T K V P - C V - L P S R - S Y - . . . . . . 40996 TTATTCACTTGCCCTAGTGGTAGTACAAATTATAGGGTTGTTTTTTGCCCATAATTGATG L F T C P S G S T N Y R V V F C P - L M Y S L A L V V V Q I I G L F F A H N - C L I H L P - W - Y K L - G C F L P I I D . . . . . . 40936 CCACAATAAAGCATATTTTGCTACAAATTGAATGGTATGAAAAAATTACCAAAATAATAA P Q - S I F C Y K L N G M K K L P K - - H N K A Y F A T N - M V - K N Y Q N N K A T I K H I L L Q I E W Y E K I T K I I . . 40876 GCATCTTAAACGGTCTGCT A S - T V C H L K R S A S I L N G L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-12_AGS-1_PPS_1 (41656 40943) (frame '1'; 711 bp, 237 residues) 1 ISKINKNMYT NMGYLTSSFI FFFLALVTYT YAATIEVRNN CPYTVWAAST PIGGGRRLDR 61 GQTWVINAPR GTKMARIWGR TNCNFNGAGR GSCQTGDCGG VLHCTGWGKP PNTLAEYALD 121 QFSNLDFWDI SLVDGFNIPM TFAPTNPSGG KCHAIHCTAN INGECPSPLR VPGGCNNPCT 181 TFGGQQYCCT QGPCGPTKFS RFFKQRCPNA YSYPQDDPTS LFTCPSGSTN YRVVFCP- 3-phase translation of AGS-1 (+strand): . . . . . . 40858 AGCAGACCGTTTAAGATGCTTATTATTTTGGTAATTTTTTCATACCATTCAATTTGTAGC S R P F K M L I I L V I F S Y H S I C S A D R L R C L L F W - F F H T I Q F V A Q T V - D A Y Y F G N F F I P F N L - . . . . . . 40918 AAAATATGCTTTATTGTGGCATCAATTATGGGCAAAAAACAACCCTATAATTTGTACTAC K I C F I V A S I M G K K Q P Y N L Y Y K Y A L L W H Q L W A K N N P I I C T T Q N M L Y C G I N Y G Q K T T L - F V L . . . . . . 40978 CACTAGGGCAAGTGAATAAGCTAGTAGGATCATCTTGAGGGTAGCTATACGCATTAGGGC H - G K - I S - - D H L E G S Y T H - G T R A S E - A S R I I L R V A I R I R A P L G Q V N K L V G S S - G - L Y A L G . . . . . . 41038 ACCTTTGTTTGAAAAATCTCGAAAATTTTGTAGGACCACATGGGCCTTGAGTACAACAAT T F V - K I S K I L - D H M G L E Y N N P L F E K S R K F C R T T W A L S T T I H L C L K N L E N F V G P H G P - V Q Q . . . . . . 41098 ATTGTTGTCCTCCGAACGTGGTACAAGGGTTGTTACATCCTCCGGGTACCCTAAGTGGAC I V V L R T W Y K G C Y I L R V P - V D L L S S E R G T R V V T S S G Y P K W T Y C C P P N V V Q G L L H P P G T L S G . . . . . . 41158 TAGGGCATTCACCGTTTATATTAGCCGTGCAATGAATTGCATGGCATTTTCCTCCACTAG - G I H R L Y - P C N E L H G I F L H - R A F T V Y I S R A M N C M A F S S T R L G H S P F I L A V Q - I A W H F P P L . . . . . . 41218 GATTGGTTGGGGCGAAAGTCATCGGTATATTAAATCCGTCAACCAAAGAAATGTCCCAGA D W L G R K S S V Y - I R Q P K K C P R I G W G E S H R Y I K S V N Q R N V P E G L V G A K V I G I L N P S T K E M S Q . . . . . . 41278 AATCTAGGTTGCTGAATTGGTCCAAAGCATATTCAGCTAGGGTGTTTGGGGGTTTGCCCC N L G C - I G P K H I Q L G C L G V C P I - V A E L V Q S I F S - G V W G F A P K S R L L N W S K A Y S A R V F G G L P . . . . . . 41338 ACCCGGTACAGTGTAGGACCCCACCACAATCACCAGTTTGGCATGAACCTCTACCAGCAC T R Y S V G P H H N H Q F G M N L Y Q H P G T V - D P T T I T S L A - T S T S T H P V Q C R T P P Q S P V W H E P L P A . . . . . . 41398 CATTAAAATTGCAATTAGTACGACCCCATATACGTGCCATCTTAGTGCCCCTCGGCGCAT H - N C N - Y D P I Y V P S - C P S A H I K I A I S T T P Y T C H L S A P R R I P L K L Q L V R P H I R A I L V P L G A . . . . . . 41458 TGATGACCCATGTTTGGCCTCGATCGAGACGTCGACCACCGCCTATCGGGGTCGATGCTG - - P M F G L D R D V D H R L S G S M L D D P C L A S I E T S T T A Y R G R C C L M T H V W P R S R R R P P P I G V D A . . . . . . 41518 CCCAAACGGTGTAGGGACAATTGTTGCGTACCTCGATAGTGGCAGCATAAGTGTAAGTCA P K R C R D N C C V P R - W Q H K C K S P N G V G T I V A Y L D S G S I S V S H A Q T V - G Q L L R T S I V A A - V - V . . . . . . 41578 CTAAAGCAAGGAAGAAGAAAATAAAAGAAGATGTCAAGTAGCCCATGTTTGTGTACATAT L K Q G R R K - K K M S S S P C L C T Y - S K E E E N K R R C Q V A H V C V H I T K A R K K K I K E D V K - P M F V Y I . . 41638 TTTTGTTTATTTTTGATAT F C L F L I F V Y F - Y F L F I F D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-12_AGS-1_PPS_1 (41193 41531) (frame '0'; 336 bp, 112 residues) 1 IAWHFPPLGL VGAKVIGILN PSTKEMSQKS RLLNWSKAYS ARVFGGLPHP VQCRTPPQSP 61 VWHEPLPAPL KLQLVRPHIR AILVPLGALM THVWPRSRRR PPPIGVDAAQ TV- PGL 13 (+ strand): 42396 44425 AGS-1 (42396 42417,44024 44425) SCR (e 0.773 d 0.000 a 0.000,e 0.726) Exon 1 42396 42417 ( 22 n); score: 0.773 Intron 1 42418 44023 (1606 n); Pd: 0.000 Pa: 0.000 Exon 2 44024 44425 ( 402 n); score: 0.726 PGS (42396 42417,44024 44264) SGN-U315283- PGS (44022 44425) SGN-U332003- 3-phase translation of AGS-1 (+strand): . . . : . . . 42396 AAAACAGGTTTAACTGATAAAG : TTGTTTTGAAACATTTTAAGGGTTCGGGATTCCTATTA K T G L T D K : V V L K H F K G S G F L L K Q V - L I K : L F - N I L R V R D S Y - N R F N - - S : C F E T F - G F G I P I . . . . . . 44062 GTATCTTAGGAAGGTGTAAGGCACCCAAAACACTCCGTTAACTTACGGTTTTCCAATGAT V S - E G V R H P K H S V N L R F S N D Y L R K V - G T Q N T P L T Y G F P M I S I L G R C K A P K T L R - L T V F Q - . . . . . . 44122 TAACTATTTGATTATTTTTATTTTTAACCTTTGCAAATTTATTTGAACTTTTAACATGAC - L F D Y F Y F - P L Q I Y L N F - H D N Y L I I F I F N L C K F I - T F N M T L T I - L F L F L T F A N L F E L L T - . . . . . . 44182 TTACTTAGCCAAACTTAGCCAATTTTGAAATATTTATTGTTTATCTTGCCAGTTTACGAA L L S Q T - P I L K Y L L F I L P V Y E Y L A K L S Q F - N I Y C L S C Q F T K L T - P N L A N F E I F I V Y L A S L R . . . . . . 44242 ACCATTTCAAAGTTAAGCTTACTCAAGGTTTTATCTAAACAAGCCTTACGAATTTGAAAC T I S K L S L L K V L S K Q A L R I - N P F Q S - A Y S R F Y L N K P Y E F E T N H F K V K L T Q G F I - T S L T N L K . . . . . . 44302 AATTTATCATTTAGAAGTTAGTTTTAAAAATTTTTAGGTTTGATAAAATAACAGGCGTTC N L S F R S - F - K F L G L I K - Q A F I Y H L E V S F K N F - V - - N N R R S Q F I I - K L V L K I F R F D K I T G V . . . . . . 44362 GATGAGGGTTTGGAGTTTCCTAATCCTAAGCTTACGGCATTGAAAACAAAATAAGATAAG D E G L E F P N P K L T A L K T K - D K M R V W S F L I L S L R H - K Q N K I S R - G F G V S - S - A Y G I E N K I R - . 44422 CAAA Q K A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 45670 51580 AGS-1 (45670 45726,50686 51580) SCR (e 0.754 d 0.990 a 0.000,e 0.981) Exon 1 45670 45726 ( 57 n); score: 0.754 Intron 1 45727 50685 (4959 n); Pd: 0.990 Pa: 0.000 Exon 2 50686 51580 ( 895 n); score: 0.981 PGS (45670 45726,50686 50873) SGN-U333462- PGS (50672 50868) SGN-U312318- PGS (50682 51580) SGN-U312323- 3-phase translation of AGS-1 (+strand): . . . . . . : 45670 TTTTTTTTTAATTTTTTTTTTAAATTTAATTTTCTATTATTATTATTTATTTATTTT : TAA F F F N F F F K F N F L L L L F I Y F : - F F L I F F L N L I F Y Y Y Y L F I F : K F F - F F F - I - F S I I I I Y L F : L . . . . . . 50689 AGATATTCTTTATTTTCCTTTTATTCATCACAAACTAAGGAACTACATAGTACTTCCATA R Y S L F S F Y S S Q T K E L H S T S I D I L Y F P F I H H K L R N Y I V L P Y K I F F I F L L F I T N - G T T - Y F H . . . . . . 50749 TTATCACTATATATATGATGAATAAAAACATCATATTTTTCCTTGACTTAGTAATTAATC L S L Y I - - I K T S Y F S L T - - L I Y H Y I Y D E - K H H I F P - L S N - S I I T I Y M M N K N I I F F L D L V I N . . . . . . 50809 CTCCTAGCAAGGAGAATAACATAGCCTTATTCAAATTATTAATACAAAAGGATATATAGA L L A R R I T - P Y S N Y - Y K R I Y R S - Q G E - H S L I Q I I N T K G Y I D P P S K E N N I A L F K L L I Q K D I - . . . . . . 50869 TAGGCAGATAGATATTTAAGGACAGAATACAACCCTATAATTAGTACCAGCAGGGCAAGT - A D R Y L R T E Y N P I I S T S R A S R Q I D I - G Q N T T L - L V P A G Q V I G R - I F K D R I Q P Y N - Y Q Q G K . . . . . . 50929 GAAAGTACTAGTTTGATCATCCTTAGGGTAACTATATGCATCAGGACACCTCTCCTTAAA E S T S L I I L R V T I C I R T P L L K K V L V - S S L G - L Y A S G H L S L K - K Y - F D H P - G N Y M H Q D T S P - . . . . . . 50989 AAATCTCGAAAATTTAGTCGGACCACAGTTACCAGAGTTACAACAATATTGATCAGTCTT K S R K F S R T T V T R V T T I L I S L N L E N L V G P Q L P E L Q Q Y - S V L K I S K I - S D H S Y Q S Y N N I D Q S . . . . . . 51049 AAAAACAGTACAAGGGTTGTTACATCCTCCGGGAGCTTTCAATTCATTAGGACATTGTTG K N S T R V V T S S G S F Q F I R T L L K T V Q G L L H P P G A F N S L G H C - - K Q Y K G C Y I L R E L S I H - D I V . . . . . . 51109 ATTAATTTCCGCTTTACACGTTATGCCACGGGTGCACCCATTGGAAGTTGGACTAAATTC I N F R F T R Y A T G A P I G S W T K F L I S A L H V M P R V H P L E V G L N S D - F P L Y T L C H G C T H W K L D - I . . . . . . 51169 CATAGGAACATTAAATCCATCGACAAGAGAAATATCGAAAAAATCTTTATTTGCAAATTG H R N I K S I D K R N I E K I F I C K L I G T L N P S T R E I S K K S L F A N W P - E H - I H R Q E K Y R K N L Y L Q I . . . . . . 51229 GTTTAGGGCATATTCAGCTAATGTATTTGGTGGTACACCAAAAGATTTACATACAAGAAG V - G I F S - C I W W Y T K R F T Y K K F R A Y S A N V F G G T P K D L H T R R G L G H I Q L M Y L V V H Q K I Y I Q E . . . . . . 51289 ACCATTACAATCTCCAGTTTGGCATTTTCCCTTACCGGATGCATCGAAATTGCATCCGGT T I T I S S L A F S L T G C I E I A S G P L Q S P V W H F P L P D A S K L H P V D H Y N L Q F G I F P Y R M H R N C I R . . . . . . 51349 ACGGCCCCAAACTCGAGCTTGTTTAGTCCCCGGAGGGGCGTTTATCGTCCACGTTTGGCC T A P N S S L F S P R R G V Y R P R L A R P Q T R A C L V P G G A F I V H V W P Y G P K L E L V - S P E G R L S S T F G . . . . . . 51409 ACGATCGAGGCGTTTGCCGCCTCCGGCTGGGACTCCGGCAGCCCAAACGGTGTAGGGACA T I E A F A A S G W D S G S P N G V G T R S R R L P P P A G T P A A Q T V - G Q H D R G V C R L R L G L R Q P K R C R D . . . . . . 51469 ATTGTTACGAACTAAAATTGTGGCTGCATTGGCATAGGTGAAAAAAAGGGAAAAGAGAAT I V T N - N C G C I G I G E K K G K E N L L R T K I V A A L A - V K K R E K R I N C Y E L K L W L H W H R - K K G K R E . . . . . . 51529 AAAAATTGAAGTTTTCATATTTTTATTTTTTGTGTGACTACTAATAAATTGG K N - S F H I F I F C V T T N K L K I E V F I F L F F V - L L I N W - K L K F S Y F Y F L C D Y - - I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-14_AGS-1_PPS_1 (50872 51234) (frame '1'; 360 bp, 120 residues) 1 ADRYLRTEYN PIISTSRASE STSLIILRVT ICIRTPLLKK SRKFSRTTVT RVTTILISLK 61 NSTRVVTSSG SFQFIRTLLI NFRFTRYATG APIGSWTKFH RNIKSIDKRN IEKIFICKLV 121 - >C08HBa0235H18.1+_PGL-14_AGS-1_PPS_2 (51110 51463) (frame '2'; 351 bp, 117 residues) 1 LISALHVMPR VHPLEVGLNS IGTLNPSTRE ISKKSLFANW FRAYSANVFG GTPKDLHTRR 61 PLQSPVWHFP LPDASKLHPV RPQTRACLVP GGAFIVHVWP RSRRLPPPAG TPAAQTV- AGS-2 (46874 47131) SCR (e 0.906) Exon 1 46874 47131 ( 258 n); score: 0.906 PGS (46874 47131) SGN-U312654+ PGS (46874 47128) SGN-U333797+ PGS (46874 47128) SGN-U312653+ PGS (46877 47131) SGN-U333798+ 3-phase translation of AGS-2 (+strand): . . . . . . 46874 TCAACGTCTCGATCAAGGCCAGACTTGGACCATCAATGCACTGAGGGGCACTAAGATGGC S T S R S R P D L D H Q C T E G H - D G Q R L D Q G Q T W T I N A L R G T K M A N V S I K A R L G P S M H - G A L R W . . . . . . 46934 ACGTATATGGGGTCGTACTAAATGCAACTTTGACGGTGCTGGTAGAGGTTCTTGTGAGAC T Y M G S Y - M Q L - R C W - R F L - D R I W G R T K C N F D G A G R G S C E T H V Y G V V L N A T L T V L V E V L V R . . . . . . 46994 TGGTGATTGTGGTGGAGTCTTGCAGTGTACCGGGTGGGGTAAACCGCCAAACACCTTGGC W - L W W S L A V Y R V G - T A K H L G G D C G G V L Q C T G W G K P P N T L A L V I V V E S C S V P G G V N R Q T P W . . . . . . 47054 CGAATACGCCTTGAACCAGTTTAACAACCTAGATTTCTGGGACATTTCTTTAGTCGATGG R I R L E P V - Q P R F L G H F F S R W E Y A L N Q F N N L D F W D I S L V D G P N T P - T S L T T - I S G T F L - S M . . 47114 ATTTAATCTGCAAATTAG I - S A N - F N L Q I D L I C K L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-14_AGS-2_PPS_1 (46875 47129) (frame '2'; 255 bp, 85 residues) 1 QRLDQGQTWT INALRGTKMA RIWGRTKCNF DGAGRGSCET GDCGGVLQCT GWGKPPNTLA 61 EYALNQFNNL DFWDISLVDG FNLQI 3-phase translation of AGS-2 (-strand): . . . . . . 47131 CTAATTTGCAGATTAAATCCATCGACTAAAGAAATGTCCCAGAAATCTAGGTTGTTAAAC L I C R L N P S T K E M S Q K S R L L N - F A D - I H R L K K C P R N L G C - T N L Q I K S I D - R N V P E I - V V K . . . . . . 47071 TGGTTCAAGGCGTATTCGGCCAAGGTGTTTGGCGGTTTACCCCACCCGGTACACTGCAAG W F K A Y S A K V F G G L P H P V H C K G S R R I R P R C L A V Y P T R Y T A R L V Q G V F G Q G V W R F T P P G T L Q . . . . . . 47011 ACTCCACCACAATCACCAGTCTCACAAGAACCTCTACCAGCACCGTCAAAGTTGCATTTA T P P Q S P V S Q E P L P A P S K L H L L H H N H Q S H K N L Y Q H R Q S C I - D S T T I T S L T R T S T S T V K V A F . . . . . . 46951 GTACGACCCCATATACGTGCCATCTTAGTGCCCCTCAGTGCATTGATGGTCCAAGTCTGG V R P H I R A I L V P L S A L M V Q V W Y D P I Y V P S - C P S V H - W S K S G S T T P Y T C H L S A P Q C I D G P S L . . 46891 CCTTGATCGAGACGTTGA P - S R R - L D R D V A L I E T L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-14_AGS-2_PPS_1 (47131 46886) (frame '1'; 243 bp, 81 residues) 1 LICRLNPSTK EMSQKSRLLN WFKAYSAKVF GGLPHPVHCK TPPQSPVSQE PLPAPSKLHL 61 VRPHIRAILV PLSALMVQVW P- PGL 15 (+ strand): 60397 62313 AGS-1 (60397 60419,61974 62313) SCR (e 0.739 d 0.900 a 0.977,e 0.866) Exon 1 60397 60419 ( 23 n); score: 0.739 Intron 1 60420 61973 (1554 n); Pd: 0.900 Pa: 0.977 Exon 2 61974 62313 ( 340 n); score: 0.866 PGS (60397 60419,61974 62313) SGN-U343956- 3-phase translation of AGS-1 (+strand): . . . : . . . 60397 AAAAACAGAACATATGATACACA : TGTCAAACAGAAAACTCTCAACGCATGTCAATTTTCA K N R T Y D T H : V K Q K T L N A C Q F S K T E H M I H : M S N R K L S T H V N F Q K Q N I - Y T : C Q T E N S Q R M S I F . . . . . . 62011 AAGACCAGTGAAGCAATGACATATGCCCAAACACTTGACAGAAGTCCATACCGGAGCTGA K T S E A M T Y A Q T L D R S P Y R S - R P V K Q - H M P K H L T E V H T G A E K D Q - S N D I C P N T - Q K S I P E L . . . . . . 62071 AGAATTAATGAGAAAACATCGCGAAAGGTATAAAACTATATATGACAAACATGTAAACTT R I N E K T S R K V - N Y I - Q T C K L E L M R K H R E R Y K T I Y D K H V N L K N - - E N I A K G I K L Y M T N M - T . . . . . . 62131 GATTAGGGTAAGATTCTCGTTTCAATTCTATGTGGATGTACACTCCGAAAAACTGTTTTT D - G K I L V S I L C G C T L R K T V F I R V R F S F Q F Y V D V H S E K L F F - L G - D S R F N S M W M Y T P K N C F . . . . . . 62191 CCCTGTCCTATTTCAGAAGTCTAGGATTGGTTTTGTAAATATGCATTTTAACTCAATTTC P C P I S E V - D W F C K Y A F - L N F P V L F Q K S R I G F V N M H F N S I S S L S Y F R S L G L V L - I C I L T Q F . . . . . . 62251 ACATCTGTTCAAAAAATGCGTTCCTAGTGTTTCTGCCATGGATAAATAAGGTGAAAATTA T S V Q K M R S - C F C H G - I R - K L H L F K K C V P S V S A M D K - G E N - H I C S K N A F L V F L P W I N K V K I . 62311 GTT V S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-15_AGS-1_PPS_1 (62030 62299) (frame '2'; 267 bp, 89 residues) 1 HMPKHLTEVH TGAEELMRKH RERYKTIYDK HVNLIRVRFS FQFYVDVHSE KLFFPVLFQK 61 SRIGFVNMHF NSISHLFKKC VPSVSAMDK- PGL 16 (+ strand): 64270 69139 AGS-1 (64270 64622,65058 65107,65218 65353,65653 65754,65870 66097,66387 66468,66624 66706,66802 66893,67044 67410) SCR (e 1.000 d 0.981 a 1.000,e 1.000 d 0.963 a 1.000,e 1.000 d 0.969 a 0.983,e 1.000 d 0.999 a 0.993,e 1.000 d 0.982 a 0.970,e 1.000 d 0.998 a 0.979,e 1.000 d 0.000 a 0.997,e 1.000 d 0.997 a 0.990,e 1.000) Exon 1 64270 64622 ( 353 n); score: 1.000 Intron 1 64623 65057 ( 435 n); Pd: 0.981 Pa: 1.000 Exon 2 65058 65107 ( 50 n); score: 1.000 Intron 2 65108 65217 ( 110 n); Pd: 0.963 Pa: 1.000 Exon 3 65218 65353 ( 136 n); score: 1.000 Intron 3 65354 65652 ( 299 n); Pd: 0.969 Pa: 0.983 Exon 4 65653 65754 ( 102 n); score: 1.000 Intron 4 65755 65869 ( 115 n); Pd: 0.999 Pa: 0.993 Exon 5 65870 66097 ( 228 n); score: 1.000 Intron 5 66098 66386 ( 289 n); Pd: 0.982 Pa: 0.970 Exon 6 66387 66468 ( 82 n); score: 1.000 Intron 6 66469 66623 ( 155 n); Pd: 0.998 Pa: 0.979 Exon 7 66624 66706 ( 83 n); score: 1.000 Intron 7 66707 66801 ( 95 n); Pd: 0.000 Pa: 0.997 Exon 8 66802 66893 ( 92 n); score: 1.000 Intron 8 66894 67043 ( 150 n); Pd: 0.997 Pa: 0.990 Exon 9 67044 67410 ( 367 n); score: 1.000 PGS (64270 64622,65058 65107,65218 65353,65653 65754,65870 66097,66387 66468,66624 66706,66802 66893,67044 67410) SGN-U315600+ PGS (64300 64622,65058 65107,65218 65353,65653 65754,65870 66022) SGN-U335231+ 3-phase translation of AGS-1 (+strand): . . . . . . 64270 TTTTTTTCAAGAAGAGTCTTGATTTGCTCAAAACTTTTTCCCTTTTTCTTCACGTATCTT F F S R R V L I C S K L F P F F F T Y L F F Q E E S - F A Q N F F P F S S R I F F F K K S L D L L K T F S L F L H V S . . . . . . 64330 CTACAACTAAAAAGAAAGAACCCCTTTTTTTCTGATTTTCCATAAAAATTGGTTCTTGAA L Q L K R K N P F F S D F P - K L V L E Y N - K E R T P F F L I F H K N W F L K S T T K K K E P L F F - F S I K I G S - . . . . . . 64390 AGGATAAAGATTGAATCTTTGTTGTGTTTTATGAAATGGGTGTTCAGTGTCAAGAAAATA R I K I E S L L C F M K W V F S V K K I G - R L N L C C V L - N G C S V S R K Y K D K D - I F V V F Y E M G V Q C Q E N . . . . . . 64450 TTTTGGTGACTGGAGGAGCTGGTTTCATTGGAACACATACTGTGGTGCAGTTACTGAATG F W - L E E L V S L E H I L W C S Y - M F G D W R S W F H W N T Y C G A V T E - I L V T G G A G F I G T H T V V Q L L N . . . . . . 64510 AAGGGTTCAAAGTTACAATCATTGATAACTTTCATAATTCTGTGAAAGAAGCTGTTGATA K G S K L Q S L I T F I I L - K K L L I R V Q S Y N H - - L S - F C E R S C - - E G F K V T I I D N F H N S V K E A V D . . . . . . : 64570 GAGTCAGAGAATTAGTTGGTCCTCAACTTTCACAGAATCTTGAATTCCATTTG : GGTGATA E S E N - L V L N F H R I L N S I W : V I S Q R I S W S S T F T E S - I P F : G - Y R V R E L V G P Q L S Q N L E F H L : G D . . . . . : . 65065 TTAGAAACAGAGATGACTTGGAGAAGCTATTTTCTAAGAAAGA : GTTTGCTGCTGTGGTCC L E T E M T W R S Y F L R K : S L L L W S - K Q R - L G E A I F - E R : V C C C G P I R N R D D L E K L F S K K E : F A A V V . . . . . . 65235 ATTTTGCTGGGCTTAAGGCTGTTGGAGAGAGTGTTGTTCAGCCCTTCCTTTACTTTGAGA I L L G L R L L E R V L F S P S F T L R F C W A - G C W R E C C S A L P L L - E H F A G L K A V G E S V V Q P F L Y F E . . . . . . : 65295 ACAATCTGATTGGATCAATAACTTTGTATTCAGTCATGGCCAAGTATAATTGTAAGAAG : T T I - L D Q - L C I Q S W P S I I V R S : Q S D W I N N F V F S H G Q V - L - E : V N N L I G S I T L Y S V M A K Y N C K K : . . . . . . 65654 TGGTTTTTTCATCATCTGCAACAGTTTATGGTCAGCCTGAAAAGGTTCCCTGTGTGGAGG W F F H H L Q Q F M V S L K R F P V W R G F F I I C N S L W S A - K G S L C G G L V F S S S A T V Y G Q P E K V P C V E . . . . . : . 65714 ATTTTGAATTGAAGGCTATGAATCCTTATGGTCGAACAAAG : CTATTTCTTGAAGATATTG I L N - R L - I L M V E Q S : Y F L K I L F - I E G Y E S L W S N K : A I S - R Y C D F E L K A M N P Y G R T K : L F L E D I . . . . . . 65889 CACGGGATATCCAGAAGGCTGATCAAGAATGGAATATCATACTGTTGAGGTATTTCAACC H G I S R R L I K N G I S Y C - G I S T T G Y P E G - S R M E Y H T V E V F Q P A R D I Q K A D Q E W N I I L L R Y F N . . . . . . 65949 CGGTAGGAGCTCATGAAAGTGGCAAACTCGGGGAAGATCCAAAGGGCATTCCGAACAATC R - E L M K V A N S G K I Q R A F R T I G R S S - K W Q T R G R S K G H S E Q S P V G A H E S G K L G E D P K G I P N N . . . . . . 66009 TTATGCCTTACATTCAGCAAGTAGCTGTTGGTAGATTGCCGGAGTTGAATGTATATGGCA L C L T F S K - L L V D C R S - M Y M A Y A L H S A S S C W - I A G V E C I W Q L M P Y I Q Q V A V G R L P E L N V Y G . . . : . . . 66069 ACGACTACCCTACACCTGATGGTACCGCG : ATACGAGATTATATCCATGTTATGGATTTGG T T T L H L M V P R : Y E I I S M L W I W R L P Y T - W Y R : D T R L Y P C Y G F G N D Y P T P D G T A : I R D Y I H V M D L . . . . . . : 66418 CGGACGGTCATGTTGTTGCACTTCAGAGACTTCTAAGGCAGAATCACATAG : GTTGTGTTG R T V M L L H F R D F - G R I T - : V V L G R S C C C T S E T S K A E S H R : L C C A D G H V V A L Q R L L R Q N H I : G C V . . . . . . 66633 CCTACAATTTGGGTACTGGAAAAGGCAAATCTGTCCTAGAGATGGTTGGTGCCTTTGAAA P T I W V L E K A N L S - R W L V P L K L Q F G Y W K R Q I C P R D G W C L - K A Y N L G T G K G K S V L E M V G A F E . . : . . . . 66693 AGGCGTCTGGAAAG : AAAATCCCGCTTAAAATGTGTCCAAGAAGACCAGGAGATGCCACTG R R L E R : K S R L K C V Q E D Q E M P L G V W K : E N P A - N V S K K T R R C H C K A S G K : K I P L K M C P R R P G D A T . . . . . : . 66848 CTGTTTACGCATCTACTGAAAAAGCTGAGAAGGAGCTCGGTTGGAA : GGCAAAATATGGGA L F T H L L K K L R R S S V G : R Q N M G C L R I Y - K S - E G A R L E : G K I W D A V Y A S T E K A E K E L G W K : A K Y G . . . . . . 67058 TAAATGAGATGTGCAGGGACCAGTGGAAATGGGCAAGCCAAAATCCTTGGGGTTACCAAC - M R C A G T S G N G Q A K I L G V T N K - D V Q G P V E M G K P K S L G L P T I N E M C R D Q W K W A S Q N P W G Y Q . . . . . . 67118 CAAAGCCTTGATATGTTATAATAATAATAATAATAATACAAGTAGCACTTGGAGTACAAA Q S L D M L - - - - - - Y K - H L E Y K K A L I C Y N N N N N N T S S T W S T K P K P - Y V I I I I I I I Q V A L G V Q . . . . . . 67178 ACTGTAGTCAACATCCTAGTACTTTACATTTCATGCAAACATTAGATGTATCCAAGGACA T V V N I L V L Y I S C K H - M Y P R T L - S T S - Y F T F H A N I R C I Q G Q N C S Q H P S T L H F M Q T L D V S K D . . . . . . 67238 AAAGTGTTCATCCATAATAGTTGTTGATGGTTATGTACTACTAAACCCTGTTGTTGTCTC K V F I H N S C - W L C T T K P C C C L K C S S I I V V D G Y V L L N P V V V S K S V H P - - L L M V M Y Y - T L L L S . . . . . . 67298 CCTTAAAGGTTTTATGGGAACTTGAATGTTCATCCTATTATGATCCCTTCAACCAAATCT P - R F Y G N L N V H P I M I P S T K S L K G F M G T - M F I L L - S L Q P N L P L K V L W E L E C S S Y Y D P F N Q I . . . . . . 67358 CTTTACTGATTGTAATTCATTCAAAAAGAGTAAATGATCTAGTCTACTATGCT L Y - L - F I Q K E - M I - S T M F T D C N S F K K S K - S S L L C S L L I V I H S K R V N D L V Y Y A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-16_AGS-1_PPS_1 (64404 64622,65058 65107,65218 65353,65653 65754,65870 66097,66387 66468,66624 66706,66802 66893,67044 67128) (frame '0'; 1074 bp, 358 residues) 1 IFVVFYEMGV QCQENILVTG GAGFIGTHTV VQLLNEGFKV TIIDNFHNSV KEAVDRVREL 61 VGPQLSQNLE FHLGDIRNRD DLEKLFSKKE FAAVVHFAGL KAVGESVVQP FLYFENNLIG 121 SITLYSVMAK YNCKKLVFSS SATVYGQPEK VPCVEDFELK AMNPYGRTKL FLEDIARDIQ 181 KADQEWNIIL LRYFNPVGAH ESGKLGEDPK GIPNNLMPYI QQVAVGRLPE LNVYGNDYPT 241 PDGTAIRDYI HVMDLADGHV VALQRLLRQN HIGCVAYNLG TGKGKSVLEM VGAFEKASGK 301 KIPLKMCPRR PGDATAVYAS TEKAEKELGW KAKYGINEMC RDQWKWASQN PWGYQPKP- AGS-2 (66122 66468,66624 66706,66802 66893,67044 67305) SCR (e 1.000 d 0.998 a 0.979,e 1.000 d 0.000 a 0.997,e 0.913 d 0.997 a 0.990,e 0.733) Exon 1 66122 66468 ( 347 n); score: 1.000 Intron 1 66469 66623 ( 155 n); Pd: 0.998 Pa: 0.979 Exon 2 66624 66706 ( 83 n); score: 1.000 Intron 2 66707 66801 ( 95 n); Pd: 0.000 Pa: 0.997 Exon 3 66802 66893 ( 92 n); score: 0.913 Intron 3 66894 67043 ( 150 n); Pd: 0.997 Pa: 0.990 Exon 4 67044 67305 ( 262 n); score: 0.733 PGS (66122 66468,66624 66706,66802 66893,67044 67305) SGN-U335232+ 3-phase translation of AGS-2 (+strand): . . . . . . 66122 TGTGACTGTAGCTTCTTTGTATGAGGAAAAAAAAGAAACTGAATGACTCAACATACCATC C D C S F F V - G K K R N - M T Q H T I V T V A S L Y E E K K E T E - L N I P S - L - L L C M R K K K K L N D S T Y H . . . . . . 66182 TGTGACTAGAGTACATACGAAAGAAACAGAAAATGAAGAGCGAGCAGAAGTTAACAGCCG C D - S T Y E R N R K - R A S R S - Q P V T R V H T K E T E N E E R A E V N S R L - L E Y I R K K Q K M K S E Q K L T A . . . . . . 66242 GAACAACTTATTGAACTACTAATAATGAAGAGAAAAGACAGAAATATAGTTGAATATCCA E Q L I E L L I M K R K D R N I V E Y P N N L L N Y - - - R E K T E I - L N I Q G T T Y - T T N N E E K R Q K Y S - I S . . . . . . 66302 AATATACTCATGACATGAATCACCTTTAACATATTTTGCTTCTTGTACTTGACTGTTAAA N I L M T - I T F N I F C F L Y L T V K I Y S - H E S P L T Y F A S C T - L L N K Y T H D M N H L - H I L L L V L D C - . . . . . . 66362 TGATCTTTAATCTATTTCTCACTAGATACGAGATTATATCCATGTTATGGATTTGGCGGA - S L I Y F S L D T R L Y P C Y G F G G D L - S I S H - I R D Y I H V M D L A D M I F N L F L T R Y E I I S M L W I W R . . . . . : . 66422 CGGTCATGTTGTTGCACTTCAGAGACTTCTAAGGCAGAATCACATAG : GTTGTGTTGCCTA R S C C C T S E T S K A E S H R : L C C L G H V V A L Q R L L R Q N H I : G C V A Y T V M L L H F R D F - G R I T - : V V L P . . . . . . 66637 CAATTTGGGTACTGGAAAAGGCAAATCTGTCCTAGAGATGGTTGGTGCCTTTGAAAAGGC Q F G Y W K R Q I C P R D G W C L - K G N L G T G K G K S V L E M V G A F E K A T I W V L E K A N L S - R W L V P L K R . : . . . . . 66697 GTCTGGAAAG : AAAATCCCGCTTAAAATGTGTCCAAGAAGACCAGGAGATGCCACTGCTGT V W K : E N P A - N V S K K T R R C H C C S G K : K I P L K M C P R R P G D A T A V R L E R : K S R L K C V Q E D Q E M P L L . . . . . : . 66852 TTACGCATCTACTGAAAAAGCTGAGAAGGAGCTCGGTTGGAA : GGCAAAATATGGGATAAA L R I Y - K S - E G A R L E : G K I W D K Y A S T E K A E K E L G W K : A K Y G I N F T H L L K K L R R S S V G : R Q N M G - . . . . . . 67062 TGAGATGTGCAGGGACCAGTGGAAATGGGCAAGCCAAAATCCTTGGGGTTACCAACCAAA - D V Q G P V E M G K P K S L G L P T K E M C R D Q W K W A S Q N P W G Y Q P K M R C A G T S G N G Q A K I L G V T N Q . . . . . . 67122 GCCTTGATATGTTATAATAATAATAATAATAATACAAGTAGCACTTGGAGTACAAAACTG A L I C Y N N N N N N T S S T W S T K L P - Y V I I I I I I I Q V A L G V Q N C S L D M L - - - - - - Y K - H L E Y K T . . . . . . 67182 TAGTCAACATCCTAGTACTTTACATTTCATGCAAACATTAGATGTATCCAAGGACAAAAG - S T S - Y F T F H A N I R C I Q G Q K S Q H P S T L H F M Q T L D V S K D K S V V N I L V L Y I S C K H - M Y P R T K . . . . . . 67242 TGTTCATCCATAATAGTTGTTGATGGTTATGTACTACTAAACCCTGTTGTTGTCTCCCTT C S S I I V V D G Y V L L N P V V V S L V H P - - L L M V M Y Y - T L L L S P L V F I H N S C - W L C T T K P C C C L P . 67302 AAAG K K - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-16_AGS-2_PPS_1 (66387 66468,66624 66706,66802 66893,67044 67128) (frame '2'; 339 bp, 113 residues) 1 IRDYIHVMDL ADGHVVALQR LLRQNHIGCV AYNLGTGKGK SVLEMVGAFE KASGKKIPLK 61 MCPRRPGDAT AVYASTEKAE KELGWKAKYG INEMCRDQWK WASQNPWGYQ PKP- AGS-3 (67576 68201,68600 69139) SCR (e 1.000 d 0.983 a 0.000,e 0.967) Exon 1 67576 68201 ( 626 n); score: 1.000 Intron 1 68202 68599 ( 398 n); Pd: 0.983 Pa: 0.000 Exon 2 68600 69139 ( 540 n); score: 0.967 PGS (67576 68201,68600 69139) SGN-U327756+ 3-phase translation of AGS-3 (+strand): . . . . . . 67576 CTAATTAGTTATCTCTATGCAAATTTGCTCAATTGGCTGCAAAAGTATCCCAGACTTTTT L I S Y L Y A N L L N W L Q K Y P R L F - L V I S M Q I C S I G C K S I P D F L N - L S L C K F A Q L A A K V S Q T F . . . . . . 67636 GGTCAAATTGTTCTTTTGAGAGTAATCATTTGCTAACAGTTGAGGAAAGGAGAGAACTAT G Q I V L L R V I I C - Q L R K G E N Y V K L F F - E - S F A N S - G K E R T M W S N C S F E S N H L L T V E E R R E L . . . . . . 67696 GAAAGAAGAAGGTAATGTGATGGTGACTGCTCAGACAATCATATCTGGTGCTTCTCCTTC E R R R - C D G D C S D N H I W C F S F K E E G N V M V T A Q T I I S G A S P S - K K K V M - W - L L R Q S Y L V L L L . . . . . . 67756 TCCTACATTAACTCCACAACCACCTTTGCCAACACCATCACCATATTCGTTCTCAGTGGC S Y I N S T T T F A N T I T I F V L S G P T L T P Q P P L P T P S P Y S F S V A L L H - L H N H L C Q H H H H I R S Q W . . . . . . 67816 ATCGACAAGGTTGAGATCAAGGCCTTCTATATATGCATATGATCTTGCCCTAAGATCACT I D K V E I K A F Y I C I - S C P K I T S T R L R S R P S I Y A Y D L A L R S L H R Q G - D Q G L L Y M H M I L P - D H . . . . . . 67876 GGCACTTCTGTTCTCTTTCATATCTGCTCTTTCACTAGCTGTACCATCACCAACAAGGAC G T S V L F H I C S F T S C T I T N K D A L L F S F I S A L S L A V P S P T R T W H F C S L S Y L L F H - L Y H H Q Q G . . . . . . 67936 AAAACGAGGAACGATTTCAAAATTCTGTGATTACCCACAATTAACGTAAGAATCAACACA K T R N D F K I L - L P T I N V R I N T K R G T I S K F C D Y P Q L T - E S T Q Q N E E R F Q N S V I T H N - R K N Q H . . . . . . 67996 GGATTTCAGGATTTAAACTAAGACAACATTCAGTTCTATGGTTTTGAGAGCTGTTTTTAC G F Q D L N - D N I Q F Y G F E S C F Y D F R I - T K T T F S S M V L R A V F T R I S G F K L R Q H S V L W F - E L F L . . . . . . 68056 ACTACTGCAGGTACTGCTTCAGTGTAAGCGTATTAGCTTTTATCTACTCAGCTTTTCAAC T T A G T A S V - A Y - L L S T Q L F N L L Q V L L Q C K R I S F Y L L S F S T H Y C R Y C F S V S V L A F I Y S A F Q . . . . . . 68116 TCTTCAAAAGAGTTTGTGACATCGCTTATAGAGGTGTCTTGATCTCCGATAAGACCTCTG S S K E F V T S L I E V S - S P I R P L L Q K S L - H R L - R C L D L R - D L - L F K R V C D I A Y R G V L I S D K T S . . . : . . . 68176 ACTATCTCAGTTTCATACTCGATCAG : TTGACAGGTTACCTCCTCGTGTCCTCTTCTTCAG T I S V S Y S I S : - Q V T S S C P L L Q L S Q F H T R S : V D R L P P R V L F F S D Y L S F I L D Q : L T G Y L L V S S S S . . . . . . 68634 TAACTATACCAGTCATTCAAGAGATGGATATCCAAGCCTCTCTCTGGAAGGCAGCTATTC - L Y Q S F K R W I S K P L S G R Q L F N Y T S H S R D G Y P S L S L E G S Y S V T I P V I Q E M D I Q A S L W K A A I . . . . . . 68694 TTGCTGTTTGCATGTCATTTGCTGCTTTCATGGTCCTTGCAGTGTCTGCACTTTTATCAG L L F A C H L L L S W S L Q C L H F Y Q C C L H V I C C F H G P C S V C T F I R L A V C M S F A A F M V L A V S A L L S . . . . . . 68754 GCTACAAGCTGTGCAAAAGGATCATATGGTGATGGACTGGGAATTGAACGTGCAGCCTTC A T S C A K G S Y G D G L G I E R A A F L Q A V Q K D H M V M D W E L N V Q P S G Y K L C K R I I W - W T G N - T C S L . . . . . . 68814 AACTCCAGGATTGACAAAGCAATCGTAGTGTAAAATGGGACATGATTTCTTCGATCTGCT N S R I D K A I V V - N G T - F L R S A T P G L T K Q S - C K M G H D F F D L L Q L Q D - Q S N R S V K W D M I S S I C . . . . . . 68874 TGAAGCATCACAAGAAGCAATTGGGTGGCAGATACCAAATATCCTCTACTACACTAATGG - S I T R S N W V A D T K Y P L L H - W E A S Q E A I G W Q I P N I L Y Y T N G L K H H K K Q L G G R Y Q I S S T T L M . . . . . . 68934 TCTGGTAGAAGTTGATAACAGTAAGAAGAGGGTTTCAGAAGTTTATAGCAAAGAATAGAA S G R S - - Q - E E G F R S L - Q R I E L V E V D N S K K R V S E V Y S K E - K V W - K L I T V R R G F Q K F I A K N R . . . . . . 68994 ATATTTTTGGAGGAAAATATCCATATACACTATGAATTGTTGTCCCACCGCCATGGTGAA I F L E E N I H I H Y E L L S H R H G E Y F W R K I S I Y T M N C C P T A M V N N I F G G K Y P Y T L - I V V P P P W - . . . . . . 69054 TGAACAGTATTAAGTAGTAACAAACTAGTTTGAACTTCCTTGCTTCGAAGTATAACAAAA - T V L S S N K L V - T S L L R S I T K E Q Y - V V T N - F E L P C F E V - Q K M N S I K - - Q T S L N F L A S K Y N K . . . 69114 ACTTACAGTTCTTTTTCTACAGATAA T Y S S F S T D L T V L F L Q I N L Q F F F Y R - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-16_AGS-3_PPS_1 (68043 68201,68600 68785) (frame '0'; 342 bp, 114 residues) 1 ELFLHYCRYC FSVSVLAFIY SAFQLFKRVC DIAYRGVLIS DKTSDYLSFI LDQLTGYLLV 61 SSSSVTIPVI QEMDIQASLW KAAILAVCMS FAAFMVLAVS ALLSGYKLCK RIIW- >C08HBa0235H18.1+_PGL-16_AGS-3_PPS_2 (67679 67984) (frame '2'; 303 bp, 101 residues) 1 GKERTMKEEG NVMVTAQTII SGASPSPTLT PQPPLPTPSP YSFSVASTRL RSRPSIYAYD 61 LALRSLALLF SFISALSLAV PSPTRTKRGT ISKFCDYPQL T- PGL 17 (- strand): 72228 69157 AGS-1 (72228 72191,71367 69157) SCR (e 0.947 d 0.991 a 0.980,e 0.997) Exon 1 72228 72191 ( 38 n); score: 0.947 Intron 1 72190 71368 ( 823 n); Pd: 0.991 Pa: 0.980 Exon 2 71367 69157 (2211 n); score: 0.997 PGS (70017 69157) SGN-U338980- PGS (70023 69193) SGN-U314693+ PGS (69525 69208) SGN-U314694+ PGS (72228 72191,71367 69489) SGN-U314692+ 3-phase translation of AGS-1 (-strand): . . . . : . . 72228 GGAAGGGCAGCTAAGTTGTGAAGAAGAAGATGAAGGAG : TCTGATTGGTGATGATAGTAAA G R A A K L - R R R - R S : L I G D D S K E G Q L S C E E E D E G : V - L V M I V N K G S - V V K K K M K E : S D W - - - - . . . . . . 71345 TTGCTTAAGAGGATTTTGGCATTATAAATAGTCATATCAAGTTTGAGTTGTTCCATGAGA L L K R I L A L - I V I S S L S C S M R C L R G F W H Y K - S Y Q V - V V P - D I A - E D F G I I N S H I K F E L F H E . . . . . . 71285 TAGCAACTGGGAAAACAAGTACTAGAAAAACCATGCCTGCTTTAGTGCTAACAAGGGCCC - Q L G K Q V L E K P C L L - C - Q G P S N W E N K Y - K N H A C F S A N K G P I A T G K T S T R K T M P A L V L T R A . . . . . . 71225 TCTTGTTAATTGGGGATTCTTTAGCTTTCAGAAAAGCTACACAGTTTACACGGATAGCTC S C - L G I L - L S E K L H S L H G - L L V N W G F F S F Q K S Y T V Y T D S S L L L I G D S L A F R K A T Q F T R I A . . . . . . 71165 CATCTCAAGGCAATGTTCGCTTTTTAAGTAGCAGTGGATCCCTCACTCTAGCTAGCCTTG H L K A M F A F - V A V D P S L - L A L I S R Q C S L F K - Q W I P H S S - P W P S Q G N V R F L S S S G S L T L A S L . . . . . . 71105 GATTGAAGAGTGAAGTTAAGACAGTAAGTGCAAATGAGAAAAATAAGCTCCAGCAGGGAA D - R V K L R Q - V Q M R K I S S S R E I E E - S - D S K C K - E K - A P A G N G L K S E V K T V S A N E K N K L Q Q G . . . . . . 71045 TTTCAACTATTGAGGTCCCAAAGAGCAGAGAGAAGAAAAGAGTTAGTGGCAATAAACAAG F Q L L R S Q R A E R R K E L V A I N K F N Y - G P K E Q R E E K S - W Q - T R I S T I E V P K S R E K K R V S G N K Q . . . . . . 70985 GATTGGTTAAGGAGAAAAACCCAGTAGATATAATGACTGCACCATTTGCTGCGAAGTCAT D W L R R K T Q - I - - L H H L L R S H I G - G E K P S R Y N D C T I C C E V I G L V K E K N P V D I M T A P F A A K S . . . . . . 70925 TTTCAGAACTTGGCCTTCCACCTTTGTTGGTCGAAAGACTAGAGACGGAAGGCTTTACGA F Q N L A F H L C W S K D - R R K A L R F R T W P S T F V G R K T R D G R L Y D F S E L G L P P L L V E R L E T E G F T . . . . . . 70865 TTCCGACTGATGTTCAAGCTGCTGCAGTTCCAACTGTTCTTAAAAATCATGATGTTGTGA F R L M F K L L Q F Q L F L K I M M L - S D - C S S C C S S N C S - K S - C C D I P T D V Q A A A V P T V L K N H D V V . . . . . . 70805 TTCAGTCCTACACAGGTTCAGGAAAAACATTAGCTTATCTCCTTCCCATACTGTCTCGAG F S P T Q V Q E K H - L I S F P Y C L E S V L H R F R K N I S L S P S H T V S S I Q S Y T G S G K T L A Y L L P I L S R . . . . . . 70745 TTGGTCCGTTGAAGGAAGAACTTCCAGATGGCTATGAAACTGGGAACAAAATAGACATCG L V R - R K N F Q M A M K L G T K - T S W S V E G R T S R W L - N W E Q N R H R V G P L K E E L P D G Y E T G N K I D I . . . . . . 70685 AAGCAGTTATAGTAGCTCCTTCGAGGGAACTTGGCATGCAGATTGTCAGGGAAGTTGAAA K Q L - - L L R G N L A C R L S G K L K S S Y S S S F E G T W H A D C Q G S - K E A V I V A P S R E L G M Q I V R E V E . . . . . . 70625 AGCTGTTAGGACCAGCGAATAAGAAACTAGTCCAGCAGCTTGTAGGGGGTGCAAACCGAT S C - D Q R I R N - S S S L - G V Q T D A V R T S E - E T S P A A C R G C K P I K L L G P A N K K L V Q Q L V G G A N R . . . . . . 70565 CTAGACAGGAGGATGCTCTGAAGAAGAACAAGCCCGACATTGTAGTGGGGACACCAGGGC L D R R M L - R R T S P T L - W G H Q G - T G G C S E E E Q A R H C S G D T R A S R Q E D A L K K N K P D I V V G T P G . . . . . . 70505 GGATAGCAGAGATTAGTGCAGCTGGAAAGCTTCCTACCCATGGTTGTCGTTACTTGGTAT G - Q R L V Q L E S F L P M V V V T W Y D S R D - C S W K A S Y P W L S L L G I R I A E I S A A G K L P T H G C R Y L V . . . . . . 70445 TGGATGAAATTGATCAACTCCTTGCATTCACTTTCAGGGAGGACATGAAGCGTATATTAG W M K L I N S L H S L S G R T - S V Y - G - N - S T P C I H F Q G G H E A Y I R L D E I D Q L L A F T F R E D M K R I L . . . . . . 70385 ACCATGTGGGGAGAAGACCTGGTGCACGTGGAGGAGAGTCAAATAGTCCACTTGTCAAGC T M W G E D L V H V E E S Q I V H L S S P C G E K T W C T W R R V K - S T C Q A D H V G R R P G A R G G E S N S P L V K . . . . . . 70325 GAGCTGCACGTCAGACTATTATGGTGTCTGCAACAGTGCCTTTTTCAGTTATAAGAGCAG E L H V R L L W C L Q Q C L F Q L - E Q S C T S D Y Y G V C N S A F F S Y K S S R A A R Q T I M V S A T V P F S V I R A . . . . . . 70265 CAAGAAGTTGGGGTTGTGATCCACTTCTCATCCAAGCCAATAAAGTTGTTCCACTCGAGT Q E V G V V I H F S S K P I K L F H S S K K L G L - S T S H P S Q - S C S T R V A R S W G C D P L L I Q A N K V V P L E . . . . . . 70205 CTGTCACTCCTTCTGGATCTGTTAATATACCGGGAACACCTTCTACTACTGATTCAAGCT L S L L L D L L I Y R E H L L L L I Q A C H S F W I C - Y T G N T F Y Y - F K L S V T P S G S V N I P G T P S T T D S S . . . . . . 70145 CAAGTGTACAACCTATGCCTGATGTTCAGAGCTTACCCCCTAATTTGCAGCATTATTACA Q V Y N L C L M F R A Y P L I C S I I T K C T T Y A - C S E L T P - F A A L L H S S V Q P M P D V Q S L P P N L Q H Y Y . . . . . . 70085 CTATTACTAGGATACAGCACAAAGTTGATATGTTAAGAAGGTGTGTGCACGCTCTGGATG L L L G Y S T K L I C - E G V C T L W M Y Y - D T A Q S - Y V K K V C A R S G C T I T R I Q H K V D M L R R C V H A L D . . . . . . 70025 CCAAATGTGTAATAGCTTTTATGAACCACACAAAACAGCTAAAAGATGCTGTCTTCAAAC P N V - - L L - T T Q N S - K M L S S N Q M C N S F Y E P H K T A K R C C L Q T A K C V I A F M N H T K Q L K D A V F K . . . . . . 69965 TAGAAGCTCGTGGTATGAATGCTGCAGAATTACATGGTGATCTTAGCAAACTTGTGAGAT - K L V V - M L Q N Y M V I L A N L - D R S S W Y E C C R I T W - S - Q T C E I L E A R G M N A A E L H G D L S K L V R . . . . . . 69905 CAACAATCTTAAAGAAGTTCAGAAATGGGGAGATTAGAGTGCTGCTAACGAATGAGCTTT Q Q S - R S S E M G R L E C C - R M S F N N L K E V Q K W G D - S A A N E - A F S T I L K K F R N G E I R V L L T N E L . . . . . . 69845 CAGCTAGAGGCTTGGATTTACCTGAATGTGATCTTGTAGTTAATCTGGGGTTACCTACTG Q L E A W I Y L N V I L - L I W G Y L L S - R L G F T - M - S C S - S G V T Y - S A R G L D L P E C D L V V N L G L P T . . . . . . 69785 ACTCGGTTCATTATGCTCATCGAGCTGGTCGTACGGGCAGGCTTGGTCGCAAGGGCACGG T R F I M L I E L V V R A G L V A R A R L G S L C S S S W S Y G Q A W S Q G H G D S V H Y A H R A G R T G R L G R K G T . . . . . . 69725 TAGTAACCATATGTGAAGAGTCAGAAGTCTTTGTGGTAAAAAAGCTACAGAAGCAACTTT - - P Y V K S Q K S L W - K S Y R S N F S N H M - R V R S L C G K K A T E A T F V V T I C E E S E V F V V K K L Q K Q L . . . . . . 69665 CCCTCTCTATCGAGGCATGTGAATTTTCTGAGGGAAATCTTGTCATTATAGAAGATTAAA P S L S R H V N F L R E I L S L - K I K P L Y R G M - I F - G K S C H Y R R L N S L S I E A C E F S E G N L V I I E D - . . . . . . 69605 CTGCATAGCACTTGCTTCTGTCAAGTTTTAACTAGACAAATCACTAAAGACAACTGAAAT L H S T C F C Q V L T R Q I T K D N - N C I A L A S V K F - L D K S L K T T E I T A - H L L L S S F N - T N H - R Q L K . . . . . . 69545 TTGTTTACTAGTGGTGAGAGCTGAAATGTTGTTGCTTGCCATTAAACATGCCAATTCAGA L F T S G E S - N V V A C H - T C Q F R C L L V V R A E M L L L A I K H A N S D F V Y - W - E L K C C C L P L N M P I Q . . . . . . 69485 TGAGATTTTGCCTTCTAAAGAATGTGCCGACTTTAGAATGTGCCGAGCAGTCTACATTTG - D F A F - R M C R L - N V P S S L H L E I L P S K E C A D F R M C R A V Y I - M R F C L L K N V P T L E C A E Q S T F . . . . . . 69425 ATCTGAATATCTGATGGTATGGTGAACGAATATATGTAAGCCATCTGAGACGAATGATTT I - I S D G M V N E Y M - A I - D E - F S E Y L M V W - T N I C K P S E T N D F D L N I - W Y G E R I Y V S H L R R M I . . . . . . 69365 TCAAGATTTGCTGGGTATAAATAAATAGATATCGTAAGTACTATGTGAATTGATGTTCCT S R F A G Y K - I D I V S T M - I D V P Q D L L G I N K - I S - V L C E L M F L F K I C W V - I N R Y R K Y Y V N - C S . . . . . . 69305 AATGTTGAATATGAGATAACTGTAGGTTTTAAACTGAAATTACTTCTTTGTTCATCAAGG N V E Y E I T V G F K L K L L L C S S R M L N M R - L - V L N - N Y F F V H Q G - C - I - D N C R F - T E I T S L F I K . . . . . . 69245 AAGGTTTAGTATTTTGGTTATATGGAGCTGCCAGTGTTTGATAGTATTTATAATTTTATA K V - Y F G Y M E L P V F D S I Y N F I R F S I L V I W S C Q C L I V F I I L Y E G L V F W L Y G A A S V - - Y L - F Y . . . 69185 CATTACACTGTTATTATCTTCTTGGCCTA H Y T V I I F L A I T L L L S S W P T L H C Y Y L L G L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-17_AGS-1_PPS_1 (71337 69607) (frame '0'; 1728 bp, 576 residues) 1 EDFGIINSHI KFELFHEIAT GKTSTRKTMP ALVLTRALLL IGDSLAFRKA TQFTRIAPSQ 61 GNVRFLSSSG SLTLASLGLK SEVKTVSANE KNKLQQGIST IEVPKSREKK RVSGNKQGLV 121 KEKNPVDIMT APFAAKSFSE LGLPPLLVER LETEGFTIPT DVQAAAVPTV LKNHDVVIQS 181 YTGSGKTLAY LLPILSRVGP LKEELPDGYE TGNKIDIEAV IVAPSRELGM QIVREVEKLL 241 GPANKKLVQQ LVGGANRSRQ EDALKKNKPD IVVGTPGRIA EISAAGKLPT HGCRYLVLDE 301 IDQLLAFTFR EDMKRILDHV GRRPGARGGE SNSPLVKRAA RQTIMVSATV PFSVIRAARS 361 WGCDPLLIQA NKVVPLESVT PSGSVNIPGT PSTTDSSSSV QPMPDVQSLP PNLQHYYTIT 421 RIQHKVDMLR RCVHALDAKC VIAFMNHTKQ LKDAVFKLEA RGMNAAELHG DLSKLVRSTI 481 LKKFRNGEIR VLLTNELSAR GLDLPECDLV VNLGLPTDSV HYAHRAGRTG RLGRKGTVVT 541 ICEESEVFVV KKLQKQLSLS IEACEFSEGN LVIIED- PGL 18 (+ strand): 75323 76896 AGS-1 (75323 75669,75751 76896) SCR (e 0.997 d 0.000 a 0.999,e 1.000) Exon 1 75323 75669 ( 347 n); score: 0.997 Intron 1 75670 75750 ( 81 n); Pd: 0.000 Pa: 0.999 Exon 2 75751 76896 (1146 n); score: 1.000 PGS (75323 75669,75751 76778) SGN-U328079+ PGS (76625 76896) SGN-U316082+ 3-phase translation of AGS-1 (+strand): . . . . . . 75323 GAAACTTCTAGAACAAAAACGCAAATTTCTCATTTTTCTCGTCTTCTCGATCTGTTTAGA E T S R T K T Q I S H F S R L L D L F R K L L E Q K R K F L I F L V F S I C L E N F - N K N A N F S F F S S S R S V - . . . . . . 75383 GGGGGTTTGGATCTGAATTGACGGCAACGGTGGATGCTATGGTGCCATCGTCGGTTGATT G G L D L N - R Q R W M L W C H R R L I G V W I - I D G N G G C Y G A I V G - L R G F G S E L T A T V D A M V P S S V D . . . . . . 75443 GTACCGGCGAATCTGCCACCGGGGAGAATCAGAGATCTCTTCCGACGCCATTTTTGACGA V P A N L P P G R I R D L F R R H F - R Y R R I C H R G E S E I S S D A I F D E C T G E S A T G E N Q R S L P T P F L T . . . . . . 75503 AAACTTATCAGCTTGTCGATGATCCTGCTATGGATGAGTTGATCTCGTGGAATGAAGATG K L I S L S M I L L W M S - S R G M K M N L S A C R - S C Y G - V D L V E - R W K T Y Q L V D D P A M D E L I S W N E D . . . . . . 75563 GAACGACATTTATTGTTTGGAAACCTGCGGAGTTTGCTAGGGATTTGCTTCCCAAATGTT E R H L L F G N L R S L L G I C F P N V N D I Y C L E T C G V C - G F A S Q M F G T T F I V W K P A E F A R D L L P K C . . . . . : . 75623 TTAAGCATAATAATTTTTCCAGTTTTGTTCGGCAGCTTAATACTTAC : GGATTTAGAAAAG L S I I I F P V L F G S L I L T : D L E K - A - - F F Q F C S A A - Y L : R I - K S F K H N N F S S F V R Q L N T Y : G F R K . . . . . . 75764 TTGTACCTGATCGATGGGAATTCGCAAATGACTGTTTCCGTAGAGGTGAGAAAGGACTAC L Y L I D G N S Q M T V S V E V R K D Y C T - S M G I R K - L F P - R - E R T T V V P D R W E F A N D C F R R G E K G L . . . . . . 75824 TTCGTGACATTCAACGCCGGAAAATTTCACCGGCAGGTGCTGCGGTTGTTGCACCAGCAG F V T F N A G K F H R Q V L R L L H Q Q S - H S T P E N F T G R C C G C C T S S L R D I Q R R K I S P A G A A V V A P A . . . . . . 75884 TAGTAACGGTGAATGCTGCACAAGCGGTGACGGTAGCGGTAGCACCAGCGGTCAGGGTGG - - R - M L H K R - R - R - H Q R S G W S N G E C C T S G D G S G S T S G Q G G V V T V N A A Q A V T V A V A P A V R V . . . . . . 75944 TTTCTTCATCGAATTCCGGTGATGAGCAGGCGTTCTCATCGAACTCATCTGGTGCCGCAG F L H R I P V M S R R S H R T H L V P Q F F I E F R - - A G V L I E L I W C R S V S S S N S G D E Q A F S S N S S G A A . . . . . . 76004 CTGGAGCGGCGATGTTAAGGACCACTACGTGTACGACGACGCCGGAGCTTATAGAGGAGA L E R R C - G P L R V R R R R S L - R R W S G D V K D H Y V Y D D A G A Y R G E A G A A M L R T T T C T T T P E L I E E . . . . . . 76064 ACGAACGGTTGAGAAAGGAGAACGCACAACTAAATCAGGAATTGAATCGGTTGAGAAGTT T N G - E R R T H N - I R N - I G - E V R T V E K G E R T T K S G I E S V E K F N E R L R K E N A Q L N Q E L N R L R S . . . . . . 76124 TATGCAGTAACGTATACAATCTGATGTCCAATTACACGGCGAATCCGGCGGATATACCGG Y A V T Y T I - C P I T R R I R R I Y R M Q - R I Q S D V Q L H G E S G G Y T G L C S N V Y N L M S N Y T A N P A D I P . . . . . . 76184 CAGGTATACTAGGAGGACGAGCTTTGGAATTGCTTCGTACGGGGCAAGTTGACGGCGGCG Q V Y - E D E L W N C F V R G K L T A A R Y T R R T S F G I A S Y G A S - R R R A G I L G G R A L E L L R T G Q V D G G . . . . . . 76244 GTGCGGCCATCACAGCGGCGGAGAGCAGCGGCTTCAAGGCGGATGAAGATATGAGCCCAC V R P S Q R R R A A A S R R M K I - A H C G H H S G G E Q R L Q G G - R Y E P T G A A I T A A E S S G F K A D E D M S P . . . . . . 76304 GGTTGTTTGGTGTATCAATTGGGGTAAAGCGCGTGAGGAGAAGCAGCGAAGAAGAATCTG G C L V Y Q L G - S A - G E A A K K N L V V W C I N W G K A R E E K Q R R R I - R L F G V S I G V K R V R R S S E E E S . . . . . . 76364 AGGATCAGGATCAAGTACAACCGCATGGATCAGACATGAAATCAGAGCCGTTAGATTCAG R I R I K Y N R M D Q T - N Q S R - I Q G S G S S T T A W I R H E I R A V R F R E D Q D Q V Q P H G S D M K S E P L D S . . . . . . 76424 GAAGTGCTCAACATGATGATCAGCCATGGATTGATCGATTAGATTTAGGGTGTTGATTTC E V L N M M I S H G L I D - I - G V D F K C S T - - S A M D - S I R F R V L I S G S A Q H D D Q P W I D R L D L G C - F . . . . . . 76484 CCTTGGAGGGTGGGGTCCACAGAAGCACTTCGGCATTGATGACCAACACGTGTACAATGG P W R V G S T E A L R H - - P T R V Q W L G G W G P Q K H F G I D D Q H V Y N G P L E G G V H R S T S A L M T N T C T M . . . . . . 76544 AAGATTGTTGGTTGTTTCTGGTGGTTTCTAGAAGAAGTGAGAAATCAAGTCAAATGGTTT K I V G C F W W F L E E V R N Q V K W F R L L V V S G G F - K K - E I K S N G F E D C W L F L V V S R R S E K S S Q M V . . . . . . 76604 TTTGAGAAGGCCCCAAAAGAGGTGGAAAAGGAGAAAAACGAAGTGGCTTTTTTAATATGT F E K A P K E V E K E K N E V A F L I C L R R P Q K R W K R R K T K W L F - Y V F - E G P K R G G K G E K R S G F F N M . . . . . . 76664 TTTCATAATTGGATTGGAAAAAATAGAGGGGGCTGAGCTGGTTGGTTGAAAAAGATGACA F H N W I G K N R G G - A G W L K K M T F I I G L E K I E G A E L V G - K R - Q F S - L D W K K - R G L S W L V E K D D . . . . . . 76724 AATGTTGGAAATGATAGTCAAATGTATTAATTAGTTGGGATTAGGGAAATATTTATGTTA N V G N D S Q M Y - L V G I R E I F M L M L E M I V K C I N - L G L G K Y L C Y K C W K - - S N V L I S W D - G N I Y V . . . . . . 76784 CAATTTAAGGTGCCAACTAATTTTTGGCTAAGGAAATTATTTGTGCATAATTGAAACATT Q F K V P T N F W L R K L F V H N - N I N L R C Q L I F G - G N Y L C I I E T L T I - G A N - F L A K E I I C A - L K H . . . . . . 76844 AATAATGTTGTAACTTTATGTTTAGAAAAAAATACCTGGGTAAATTTACTGAA N N V V T L C L E K N T W V N L L I M L - L Y V - K K I P G - I Y - - - C C N F M F R K K Y L G K F T E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1+_PGL-18_AGS-1_PPS_1 (75382 75669,75751 76479) (frame '0'; 1014 bp, 338 residues) 1 RGFGSELTAT VDAMVPSSVD CTGESATGEN QRSLPTPFLT KTYQLVDDPA MDELISWNED 61 GTTFIVWKPA EFARDLLPKC FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKGL 121 LRDIQRRKIS PAGAAVVAPA VVTVNAAQAV TVAVAPAVRV VSSSNSGDEQ AFSSNSSGAA 181 AGAAMLRTTT CTTTPELIEE NERLRKENAQ LNQELNRLRS LCSNVYNLMS NYTANPADIP 241 AGILGGRALE LLRTGQVDGG GAAITAAESS GFKADEDMSP RLFGVSIGVK RVRRSSEEES 301 EDQDQVQPHG SDMKSEPLDS GSAQHDDQPW IDRLDLGC- PGL 19 (- strand): 82120 81721 AGS-1 (82120 81721) SCR (e 0.896) Exon 1 82120 81721 ( 400 n); score: 0.896 PGS (81972 81721) SGN-U334276- PGS (82120 81804) SGN-U313322+ PGS (82120 81810) SGN-U313328- PGS (82120 82010) SGN-U334277+ 3-phase translation of AGS-1 (-strand): . . . . . . 82120 AGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGATTTTTGACTTG S L F G S A - K L V K L T - K L I F D L A C L A Q L K S W S N - L K S - F L T C P V W L S L K A G Q T D L K A D F - L . . . . . . 82060 TTTAGCTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAAAAACTTATTTTAAG F S C L A I L K I T Y F K L K K T Y F K L A V W Q Y S K - L I L S - K K L I L S V - L F G N T Q N N L F - V K K N L F - . . . . . . 82000 CCAAAAGTTAAAAGCTGGGTAGGGGTGCTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTG P K V K S W V G V L F F - L I S C F K L Q K L K A G - G C F F F S L - A V L S - A K S - K L G R G A F F L A Y K L F - V . . . . . . 81940 ACCACATTTTTATCTTTTTGCTCTTAATATTTTTATACAATCTCCAAATTATCCATATAA T T F L S F C S - Y F Y T I S K L S I - P H F Y L F A L N I F I Q S P N Y P Y N D H I F I F L L L I F L Y N L Q I I H I . . . . . . 81880 CCCTAACATTTCTTTCTTCCATTTTTCTCTTTTCACGTTTGACATAACAACTTCAGCACT P - H F F L P F F S F H V - H N N F S T P N I S F F H F S L F T F D I T T S A L T L T F L S S I F L F S R L T - Q L Q H . . . . . . 81820 TTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTT F I Q T H N C L F - K - V S A L L K V L L S K R I T A Y F K N K F Q H F - K Y F F Y P N A - L L I L K I S F S T F K S T . . . . 81760 TTTTAAAGCTACTTTTATTAAGCCCATCCAAACGGCCCTT F - S Y F Y - A H P N G P F K A T F I K P I Q T A L F L K L L L L S P S K R P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 81721 AAGGGCCGTTTGGATGGGCTTAATAAAAGTAGCTTTAAAAAAGTACTTTTAAAAGTGCTG K G R L D G L N K S S F K K V L L K V L R A V W M G L I K V A L K K Y F - K C - G P F G W A - - K - L - K S T F K S A . . . . . . 81781 AAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTC K L I F K I S S Y A F G - K C - S C Y V N L F L K - A V M R L D K S A E V V M S E T Y F - N K Q L C V W I K V L K L L C . . . . . . 81841 AAACGTGAAAAGAGAAAAATGGAAGAAAGAAATGTTAGGGTTATATGGATAATTTGGAGA K R E K R K M E E R N V R V I W I I W R N V K R E K W K K E M L G L Y G - F G D Q T - K E K N G R K K C - G Y M D N L E . . . . . . 81901 TTGTATAAAAATATTAAGAGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAA L Y K N I K S K K I K M W S T - N S L - C I K I L R A K R - K C G Q L K T A Y K I V - K Y - E Q K D K N V V N L K Q L I . . . . . . 81961 GCTAAAAAAAAAGCACCCCTACCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTA A K K K A P L P S F - L L A - N K F F L L K K K H P Y P A F N F W L K I S F F - S - K K S T P T Q L L T F G L K - V F F . . . . . . 82021 ACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGCTAAACAAGTCAAAAATCAGCTTTT T - N K L F - V L P N S - T S Q K S A F L K I S Y F E Y C Q T A K Q V K N Q L L N L K - V I L S I A K Q L N K S K I S F . . . . 82081 AAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCT K S V - P A F K L S Q T G S Q F D Q L L S - A K Q A - V S L T S F - A E P N R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 20 (- strand): 88030 85309 AGS-1 (88030 87948,86274 86179,86094 85914,85809 85309) SCR (e 1.000 d 1.000 a 0.997,e 1.000 d 0.951 a 0.978,e 1.000 d 0.902 a 0.972,e 0.985) Exon 1 88030 87948 ( 83 n); score: 1.000 Intron 1 87947 86275 (1673 n); Pd: 1.000 Pa: 0.997 Exon 2 86274 86179 ( 96 n); score: 1.000 Intron 2 86178 86095 ( 84 n); Pd: 0.951 Pa: 0.978 Exon 3 86094 85914 ( 181 n); score: 1.000 Intron 3 85913 85810 ( 104 n); Pd: 0.902 Pa: 0.972 Exon 4 85809 85309 ( 501 n); score: 0.985 PGS (88030 87948,86274 86179,86094 85914,85809 85309) SGN-U329745+ 3-phase translation of AGS-1 (-strand): . . . . . . 88030 GGGTATTACTAGATGGAGGTCCATCACGTGCATTTTCTGAATTTGATGTTGTCATGATGG G Y Y - M E V H H V H F L N L M L S - W G I T R W R S I T C I F - I - C C H D G V L L D G G P S R A F S E F D V V M M . . . : . . . 87970 AAGATGACCTCAATATATTAAAA : GACTTGTTCGTTGCTGACGGAGAAGGGCTTCCCCGAT K M T S I Y - K : T C S L L T E K G F P D R - P Q Y I K : R L V R C - R R R A S P I E D D L N I L K : D L F V A D G E G L P R . . . . . . : 86237 CACTAGTTGAAGAAGAAGCGAGATTCGCTCATCAAATCCTCAGTTTATTTTCCCTCCGG : G H - L K K K R D S L I K S S V Y F P S G : T S - R R S E I R S S N P Q F I F P P : G S L V E E E A R F A H Q I L S L F S L R : . . . . . . 86093 CTGAATCTGTGATCCAATTGTTGATGACTTCTAGTGAACACAGTTCAGGACTTGAAGCAC L N L - S N C - - L L V N T V Q D L K H - I C D P I V D D F - - T Q F R T - S T A E S V I Q L L M T S S E H S S G L E A . . . . . . 86033 ATAAATATGGCCACAGACATCTGGGAGATGCACACACCTTGATACGCGTTTTATGTCACA I N M A T D I W E M H T P - Y A F Y V T - I W P Q T S G R C T H L D T R F M S Q H K Y G H R H L G D A H T L I R V L C H . . . . . . : 85973 AGAAGGAGAGAGAAGCTTCAAAATTCTTGAAGCGCTATTACCACCTCCCACCATCGTCAG : R R R E K L Q N S - S A I T T S H H R Q : E G E R S F K I L E A L L P P P T I V S : K K E R E A S K F L K R Y Y H L P P S S : . . . . . . 85809 TGTACAGTGGGGCTGCAGTGGAGGATTCCTCTATGAAGTCGCCACTTATGGCAGATCTCA C T V G L Q W R I P L - S R H L W Q I S V Q W G C S G G F L Y E V A T Y G R S H V Y S G A A V E D S S M K S P L M A D L . . . . . . 85749 TTAAAAGGAGTGCTTCGTTTCGTTGGTCTGACAAAAGCAGTAGCAGTTTCAGATCTTTAA L K G V L R F V G L T K A V A V S D L - - K E C F V S L V - Q K Q - Q F Q I F K I K R S A S F R W S D K S S S S F R S L . . . . . . 85689 AGAAGAAAATCCAAGACGCAACATCAGATTTTAGGCAAGTGGGATGGTGATGATGGACGC R R K S K T Q H Q I L G K W D G D D G R E E N P R R N I R F - A S G M V M M D A K K K I Q D A T S D F R Q V G W - - W T . . . . . . 85629 CTTCCTAACAGCATATCGCCCATTAAAGGTACTCGTTAAAAGTTGCATATATGCAAATTG L P N S I S P I K G T R - K L H I C K L F L T A Y R P L K V L V K S C I Y A N C P S - Q H I A H - R Y S L K V A Y M Q I . . . . . . 85569 CATTTAAATGAAGAATGAGAGGGTACTCCATTCTGGGAGTATTATTCTCAGAAAATTTTG H L N E E - E G T P F W E Y Y S Q K I L I - M K N E R V L H S G S I I L R K F C A F K - R M R G Y S I L G V L F S E N F . . . . . . 85509 TCATGTTTGCTTCTAACTTTGAAGATGTAGATCAATGTTGTAAACTCTGGGTCTCAACTA S C L L L T L K M - I N V V N S G S Q L H V C F - L - R C R S M L - T L G L N Y V M F A S N F E D V D Q C C K L W V S T . . . . . . 85449 TAAAAGTAAAAGTAACATTCCCAGATTATAGTATATCTACATCTCATACCTAGTTAGCAA - K - K - H S Q I I V Y L H L I P S - Q K S K S N I P R L - Y I Y I S Y L V S K I K V K V T F P D Y S I S T S H T - L A . . . . . . 85389 ATCAACATTGTGACATATCATGTATGCCTGTCCTTACTTTGCATCCACATTATTGAAATT I N I V T Y H V C L S L L C I H I I E I S T L - H I M Y A C P Y F A S T L L K F N Q H C D I S C M P V L T L H P H Y - N . . . 85329 TTATGTCATTATATATGAGAA L C H Y I - E Y V I I Y E F M S L Y M R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-20_AGS-1_PPS_1 (88028 87948,86274 86179,86094 85914,85809 85640) (frame '0'; 525 bp, 175 residues) 1 VLLDGGPSRA FSEFDVVMME DDLNILKDLF VADGEGLPRS LVEEEARFAH QILSLFSLRA 61 ESVIQLLMTS SEHSSGLEAH KYGHRHLGDA HTLIRVLCHK KEREASKFLK RYYHLPPSSV 121 YSGAAVEDSS MKSPLMADLI KRSASFRWSD KSSSSFRSLK KKIQDATSDF RQVGW- PGL 21 (- strand): 96442 96064 AGS-1 (96442 96064) SCR (e 0.737) Exon 1 96442 96064 ( 379 n); score: 0.737 PGS (96442 96064) SGN-U340390+ 3-phase translation of AGS-1 (-strand): . . . . . . 96442 ATTAGTGTTGTCAAAGGCACACTTAAGCCCTAAAGCAGGGATCAAAATGTGTTGAGTGTT I S V V K G T L K P - S R D Q N V L S V L V L S K A H L S P K A G I K M C - V F - C C Q R H T - A L K Q G S K C V E C . . . . . . 96382 TCGCCTAACTAAATGTGCGCTTCGATGTCGTCATCAAGGTTCTAAGGCATACTTTTCCTT S P N - M C A S M S S S R F - G I L F L R L T K C A L R C R H Q G S K A Y F S F F A - L N V R F D V V I K V L R H T F P . . . . . . 96322 TCTAATGAACCTTTTATGGAACGGCAACATCCAACAATTGGTATTTCGCTTTATCATATT S N E P F M E R Q H P T I G I S L Y H I L M N L L W N G N I Q Q L V F R F I I F F - - T F Y G T A T S N N W Y F A L S Y . . . . . . 96262 TTTTTTTCTATTCTTTTTGTTCATATATTTGTCATTCTTGCTTATAATATTTAGTCTTGG F F S I L F V H I F V I L A Y N I - S W F F L F F L F I Y L S F L L I I F S L G F F F Y S F C S Y I C H S C L - Y L V L . . . . . . 96202 ACTAAACATATTTATTTGTATTTTTTCTCCCTTTGCGCCTTTTTAAAATAAAGCCCACAT T K H I Y L Y F F S L C A F L K - S P H L N I F I C I F S P F A P F - N K A H I D - T Y L F V F F L P L R L F K I K P T . . . . . . 96142 TTTATTAGCACTTTGCGCTTAAAGCTCCATCAAACCTTAGAGCTTTATTGCGCTTTTTGC F I S T L R L K L H Q T L E L Y C A F C L L A L C A - S S I K P - S F I A L F A F Y - H F A L K A P S N L R A L L R F L . . 96082 TTTTGACAACACTTAACTA F - Q H L T F D N T - L L L T T L N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0235H18.1-_PGL-21_AGS-1_PPS_1 (96387 96157) (frame '2'; 228 bp, 76 residues) 1 VFRLTKCALR CRHQGSKAYF SFLMNLLWNG NIQQLVFRFI IFFFLFFLFI YLSFLLIIFS 61 LGLNIFICIF SPFAPF- 3-phase translation of AGS-1 (+strand): . . . . . . 96064 TAGTTAAGTGTTGTCAAAAGCAAAAAGCGCAATAAAGCTCTAAGGTTTGATGGAGCTTTA - L S V V K S K K R N K A L R F D G A L S - V L S K A K S A I K L - G L M E L - V K C C Q K Q K A Q - S S K V - W S F . . . . . . 96124 AGCGCAAAGTGCTAATAAAATGTGGGCTTTATTTTAAAAAGGCGCAAAGGGAGAAAAAAT S A K C - - N V G F I L K R R K G R K N A Q S A N K M W A L F - K G A K G E K I K R K V L I K C G L Y F K K A Q R E K K . . . . . . 96184 ACAAATAAATATGTTTAGTCCAAGACTAAATATTATAAGCAAGAATGACAAATATATGAA T N K Y V - S K T K Y Y K Q E - Q I Y E Q I N M F S P R L N I I S K N D K Y M N Y K - I C L V Q D - I L - A R M T N I - . . . . . . 96244 CAAAAAGAATAGAAAAAAAAATATGATAAAGCGAAATACCAATTGTTGGATGTTGCCGTT Q K E - K K K Y D K A K Y Q L L D V A V K K N R K K N M I K R N T N C W M L P F T K R I E K K I - - S E I P I V G C C R . . . . . . 96304 CCATAAAAGGTTCATTAGAAAGGAAAAGTATGCCTTAGAACCTTGATGACGACATCGAAG P - K V H - K G K V C L R T L M T T S K H K R F I R K E K Y A L E P - - R H R S S I K G S L E R K S M P - N L D D D I E . . . . . . 96364 CGCACATTTAGTTAGGCGAAACACTCAACACATTTTGATCCCTGCTTTAGGGCTTAAGTG R T F S - A K H S T H F D P C F R A - V A H L V R R N T Q H I L I P A L G L K C A H I - L G E T L N T F - S L L - G L S . . 96424 TGCCTTTGACAACACTAAT C L - Q H - A F D N T N V P L T T L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 22 (- strand): 107435 106090 AGS-1 (106935 106909,106439 106090) SCR (e 0.722 d 0.000 a 0.000,e 0.729) Exon 1 106935 106909 ( 27 n); score: 0.722 Intron 1 106908 106440 ( 469 n); Pd: 0.000 Pa: 0.000 Exon 2 106439 106090 ( 350 n); score: 0.729 PGS (106935 106909,106439 106090) SGN-U326156+ 3-phase translation of AGS-1 (-strand): . . . : . . . 106935 ATTTTTAATTATTTATCCATTTTAATA : TATAAAGACCTTAATTTAGAGTTTGATTTCCTA I F N Y L S I L I : Y K D L N L E F D F L F L I I Y P F - Y : I K T L I - S L I S Y F - L F I H F N : I - R P - F R V - F P . . . . . . 106406 TATTTATTTGCGTCTCAAGCACTTGGTAATTCTACACTGTAAAAATGTTTGCTTTTGAGC Y L F A S Q A L G N S T L - K C L L L S I Y L R L K H L V I L H C K N V C F - A I F I C V S S T W - F Y T V K M F A F E . . . . . . 106346 AAGATGTAACTTGTGAACTCGTTTGCATGGTTCATTTGGTTTGTCACCTTGTATCTAAGT K M - L V N S F A W F I W F V T L Y L S R C N L - T R L H G S F G L S P C I - V Q D V T C E L V C M V H L V C H L V S K . . . . . . 106286 GATTTTTATTTTATTTTTGATTAAATCTTAGCGGTTAAATCGATAACGATAAAAAATCGA D F Y F I F D - I L A V K S I T I K N R I F I L F L I K S - R L N R - R - K I D - F L F Y F - L N L S G - I D N D K K S . . . . . . 106226 CAAATAAATAACCAATAATTAATAAGTCAATATCTCAATGGTTATATAACGATTTAACAT Q I N N Q - L I S Q Y L N G Y I T I - H K - I T N N - - V N I S M V I - R F N I T N K - P I I N K S I S Q W L Y N D L T . . . . . . 106166 CACTACAAATCGATAACCAATAAGCCAAACTGATAAACTTTAAAATCGAACCAAATCGAT H Y K S I T N K P N - - T L K S N Q I D T T N R - P I S Q T D K L - N R T K S I S L Q I D N Q - A K L I N F K I E P N R . . 106106 CATAACAGACACTTATT H N R H L I T D T Y S - Q T L I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (107435 107231) SCR (e 1.000) Exon 1 107435 107231 ( 205 n); score: 1.000 PGS (107435 107231) SGN-U319007- 3-phase translation of AGS-2 (-strand): . . . . . . 107435 GGCTAAAATAAGATTGGGCATGTTTCCATCACGAGCAATAACTTGAAGCCTGGCAACTGC G - N K I G H V S I T S N N L K P G N C A K I R L G M F P S R A I T - S L A T A L K - D W A C F H H E Q - L E A W Q L . . . . . . 107375 ATCTTCATTGCCGACGATGTCGGATACTTTGGTGGGTCGAAACTTCTCAACCCAAGGGAT I F I A D D V G Y F G G S K L L N P R D S S L P T M S D T L V G R N F S T Q G I H L H C R R C R I L W W V E T S Q P K G . . . . . . 107315 TTCTGGTCCAGATGATGTCGAAGAAGACGATGCCATTTCTCAACTCCAAGAGAAAAAAAA F W S R - C R R R R C H F S T P R E K K S G P D D V E E D D A I S Q L Q E K K K F L V Q M M S K K T M P F L N S K R K K . . . 107255 ATAAGCCCTTCCTAAAACCCTCCTA I S P S - N P P - A L P K T L L N K P F L K P S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 107231 TAGGAGGGTTTTAGGAAGGGCTTATTTTTTTTTCTCTTGGAGTTGAGAAATGGCATCGTC - E G F R K G L F F F L L E L R N G I V R R V L G R A Y F F F S W S - E M A S S G G F - E G L I F F S L G V E K W H R . . . . . . 107291 TTCTTCGACATCATCTGGACCAGAAATCCCTTGGGTTGAGAAGTTTCGACCCACCAAAGT F F D I I W T R N P L G - E V S T H Q S S S T S S G P E I P W V E K F R P T K V L L R H H L D Q K S L G L R S F D P P K . . . . . . 107351 ATCCGACATCGTCGGCAATGAAGATGCAGTTGCCAGGCTTCAAGTTATTGCTCGTGATGG I R H R R Q - R C S C Q A S S Y C S - W S D I V G N E D A V A R L Q V I A R D G Y P T S S A M K M Q L P G F K L L L V M . . . 107411 AAACATGCCCAATCTTATTTTAGCC K H A Q S Y F S N M P N L I L A E T C P I L F - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 12:16:57 2006