GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 22:01:48 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-xrv5l/C08HBa0320P23/C08HBa0320P23.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0320P23.1, from 1 to 88562, both strands analyzed. ... started at: Mon Aug 28 22:22:56 2006 EST library file: /tmp/cxgn-bacpublish-resources-bBhdzx/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 64 EST library file: /tmp/cxgn-bacpublish-resources-bBhdzx/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 91 ******************************************************************************** EST sequence 34 -strand 532 n (File: SGN-E392467-) 1 CCAATGAACC CACCCTTTTT CATGAACGGG TGGAATACCC TTTAAGAGTT GATATGCATC 61 GCCCCCTCCT TCCACTTCAG ACATCCGTAT CCTTTTCATT TTTGAATTAA TGATCAAATT 121 GGGTAGGGAT CCCCCATATG CATACTCAAG AAACAGATTG TAAGTTGGGA CATTACCGTT 181 ATCGATGCTA ACGTTTGATC CAATGAACTG AACCCCGTAA GGGGAATTTT TGAGGGTTGT 241 CAAGATTTTT GCTTTTCGTT GGAGTGAAAC AGAACGGTTC ATATCAGCCC ATTTAACAGC 301 CGCAACAGAA ACCCATAACG AAACCGGATC CCTTTTCCCT GCATAATAAA CTTTGCCGTA 361 AGAGCCAGCG CCAAGAACGT AAAGCTTTTT CCCCTGATCC ATAATAATAT TTTCCCTTTT 421 TTCTCCCTAA TTTTTTTTTT TTTTTTGGTT ATTGAATGAT TGTGATAAAT AATAAAAGGG 481 TAGTTACTTT TTTTTAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 1006 to 1): Exon 1 386 1 ( 386 n); cDNA 2 387 ( 386 n); score: 0.925 PPA cDNA 496 532 MATCH C08HBa0320P23.1- SGN-E392467- 0.925 386 0.726 C PGS_C08HBa0320P23.1-_SGN-E392467- (386 1) Alignment (genomic DNA sequence = upper lines): CAATGAACCC ACCCTTTCTC ATGAACGTGT TGAATACCCT TTAAGAGTTG ATATGCATAG 327 |||||||||| ||||||| || ||||||| || ||||||||| |||||||||| |||||||| | CAATGAACCC ACCCTTTTTC ATGAACGGGT GGAATACCCT TTAAGAGTTG ATATGCATCG 61 AAACCTACTT CCACTTCAGA CATCCGTATC CTTCTCATCT TCGAATTAAT GATCAAATCG 267 ||| ||| |||||||||| |||||||||| ||| |||| | | |||||||| |||||||| | CCCCCTCCTT CCACTTCAGA CATCCGTATC CTTTTCATTT TTGAATTAAT GATCAAATTG 121 TGTAGCGATC CACCATATGC ATACTCAAGA AACAGATTGT AAGTTGAGAC ATTACCGTTA 207 |||| |||| | |||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GGTAGGGATC CCCCATATGC ATACTCAAGA AACAGATTGT AAGTTGGGAC ATTACCGTTA 181 TCGATGCTAA CGTCTGATCC AATGAACTGA ACCACGTAAG GTGAATCTTT GAGGGTTGTC 147 |||||||||| ||| |||||| |||||||||| ||| |||||| | |||| ||| |||||||||| TCGATGCTAA CGTTTGATCC AATGAACTGA ACCCCGTAAG GGGAATTTTT GAGGGTTGTC 241 AAGATTTCTG CTTCTCGTTG GAGTGAAACA GAACGGTTCA TATCAGCACA TTTAACAGCA 87 ||||||| || ||| |||||| |||||||||| |||||||||| ||||||| || ||||||||| AAGATTTTTG CTTTTCGTTG GAGTGAAACA GAACGGTTCA TATCAGCCCA TTTAACAGCC 301 GCAACAGAAA CACATAACGA AACAGGATCC ATCTTCACTG CATAATAAAC TTTGCCGTAA 27 |||||||||| | |||||||| ||| |||||| | ||| ||| |||||||||| |||||||||| GCAACAGAAA CCCATAACGA AACCGGATCC CTTTTCCCTG CATAATAAAC TTTGCCGTAA 361 GAGCCAGCGC CAAGAACGTA AAGCTT 1 |||||||||| |||||||||| |||||| GAGCCAGCGC CAAGAACGTA AAGCTT 387 hqPGS_C08HBa0320P23.1-_SGN-E392467- (386 1) ******************************************************************************** EST sequence 110 +strand 660 n (File: SGN-E397852+) 1 CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 61 TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 121 AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 181 ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 241 ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 301 TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 361 ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 421 ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 481 ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 541 GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 601 TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAAAACGG TTCATATCAG CACATTTAAC Predicted gene structure (within gDNA segment 1350 to 1): Exon 1 750 91 ( 660 n); cDNA 1 660 ( 660 n); score: 0.998 MATCH C08HBa0320P23.1- SGN-E397852+ 0.998 660 1.000 C PGS_C08HBa0320P23.1-_SGN-E397852+ (750 91) Alignment (genomic DNA sequence = upper lines): CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 60 TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 120 AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 180 ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 240 ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 300 TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 360 ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 420 ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 480 ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 540 GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 600 TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAGAACGG TTCATATCAG CACATTTAAC 91 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAAAACGG TTCATATCAG CACATTTAAC 660 hqPGS_C08HBa0320P23.1-_SGN-E397852+ (750 91) ******************************************************************************** EST sequence 139 +strand 655 n (File: SGN-E396268+) 1 CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 61 TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 121 AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 181 ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 241 ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 301 TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 361 ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 421 ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 481 ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 541 GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 601 TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAGAACGG TTCATATCAG CACAT Predicted gene structure (within gDNA segment 1350 to 1): Exon 1 750 96 ( 655 n); cDNA 1 655 ( 655 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E396268+ 1.000 655 1.000 C PGS_C08HBa0320P23.1-_SGN-E396268+ (750 96) Alignment (genomic DNA sequence = upper lines): CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACACTTG TACAAAAAAT CTCTGGCAAT CTCAGAAACA TCACTAGGAA CCATTGGTTC 60 TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCATA ATCTTCCATT GCAAATCCTT AGTGTCGCGA TAAATCCAAA CGCGACACCC 120 AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCATCATC TCTGCCACAG TACACCCTAA CGACCATATA TCATAACTCC TGCCATGAAA 180 ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACTGATC AAAGATTCTG GGGGCGCGTA AGGTAGAGTC CCTCTGTTGC TCATCGCAGC 240 ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGTCATA TATGCCACAC CTTCGGGAAC TCTCAACGAC AATCCAAAGT CAGCCAACTT 300 TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTGTGC ATCCCACCAC GTTCAGCGTT GTTGAAAATC AAAACATTAG CAGGTTTAAT 360 ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAATGA ACCCACCCTT TCTCATGAAC GTGTTGAATA CCCTTTAAGA GTTGATATGC 420 ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAACCT ACTTCCACTT CAGACATCCG TATCCTTCTC ATCTTCGAAT TAATGATCAA 480 ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTGTAGC GATCCACCAT ATGCATACTC AAGAAACAGA TTGTAAGTTG AGACATTACC 540 GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCGATG CTAACGTCTG ATCCAATGAA CTGAACCACG TAAGGTGAAT CTTTGAGGGT 600 TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAGAACGG TTCATATCAG CACAT 96 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGTCAAGATT TCTGCTTCTC GTTGGAGTGA AACAGAACGG TTCATATCAG CACAT 655 hqPGS_C08HBa0320P23.1-_SGN-E396268+ (750 96) ******************************************************************************** EST sequence 66 +strand 572 n (File: SGN-E241394+) 1 AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 481 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 541 TTATCGATGC TAACGTCTGA TCCAATGAAC TG Predicted gene structure (within gDNA segment 1349 to 1): Exon 1 749 178 ( 572 n); cDNA 1 572 ( 572 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E241394+ 1.000 572 1.000 C PGS_C08HBa0320P23.1-_SGN-E241394+ (749 178) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 480 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 540 TTATCGATGC TAACGTCTGA TCCAATGAAC TG 178 |||||||||| |||||||||| |||||||||| || TTATCGATGC TAACGTCTGA TCCAATGAAC TG 572 hqPGS_C08HBa0320P23.1-_SGN-E241394+ (749 178) ******************************************************************************** EST sequence 103 +strand 570 n (File: SGN-E233394+) 1 AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 481 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 541 TTATCGATGC TAACGTCTGA TCCAATGAAC Predicted gene structure (within gDNA segment 1349 to 1): Exon 1 749 180 ( 570 n); cDNA 1 570 ( 570 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E233394+ 1.000 570 1.000 C PGS_C08HBa0320P23.1-_SGN-E233394+ (749 180) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 480 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 540 TTATCGATGC TAACGTCTGA TCCAATGAAC 180 |||||||||| |||||||||| |||||||||| TTATCGATGC TAACGTCTGA TCCAATGAAC 570 hqPGS_C08HBa0320P23.1-_SGN-E233394+ (749 180) ******************************************************************************** EST sequence 119 +strand 551 n (File: SGN-E233643+) 1 AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTCGAGTCC CTCTGATGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 481 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 541 TTATCGATGC T Predicted gene structure (within gDNA segment 1349 to 1): Exon 1 749 199 ( 551 n); cDNA 1 551 ( 551 n); score: 0.996 MATCH C08HBa0320P23.1- SGN-E233643+ 0.996 551 1.000 C PGS_C08HBa0320P23.1-_SGN-E233643+ (749 199) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| ||| |||||| ||||| |||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTCGAGTCC CTCTGATGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 480 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAACAGAT TGTAAGTTGA GACATTACCG 540 TTATCGATGC T 199 |||||||||| | TTATCGATGC T 551 hqPGS_C08HBa0320P23.1-_SGN-E233643+ (749 199) ******************************************************************************** EST sequence 155 +strand 516 n (File: SGN-E241366+) 1 AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 481 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAAC Predicted gene structure (within gDNA segment 1349 to 1): Exon 1 749 234 ( 516 n); cDNA 1 516 ( 516 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E241366+ 1.000 516 1.000 C PGS_C08HBa0320P23.1-_SGN-E241366+ (749 234) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATCAAA 480 TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAAC 234 |||||||||| |||||||||| |||||||||| |||||| TCGTGTAGCG ATCCACCATA TGCATACTCA AGAAAC 516 hqPGS_C08HBa0320P23.1-_SGN-E241366+ (749 234) ******************************************************************************** EST sequence 77 +strand 477 n (File: SGN-E239684+) 1 AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATC Predicted gene structure (within gDNA segment 1349 to 1): Exon 1 749 273 ( 477 n); cDNA 1 477 ( 477 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E239684+ 1.000 477 1.000 C PGS_C08HBa0320P23.1-_SGN-E239684+ (749 273) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATC 273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAGAAACCTA CTTCCACTTC AGACATCCGT ATCCTTCTCA TCTTCGAATT AATGATC 477 hqPGS_C08HBa0320P23.1-_SGN-E239684+ (749 273) ******************************************************************************** EST sequence 126 +strand 437 n (File: SGN-E236049+) 1 AAACACTTGT TCAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 61 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 121 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 181 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 241 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 301 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 361 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 421 TAGAAACCTA CTTCCAC Predicted gene structure (within gDNA segment 1448 to 1): Exon 1 749 313 ( 437 n); cDNA 1 437 ( 437 n); score: 0.998 MATCH C08HBa0320P23.1- SGN-E236049+ 0.998 437 1.000 C PGS_C08HBa0320P23.1-_SGN-E236049+ (749 313) Alignment (genomic DNA sequence = upper lines): AAACACTTGT ACAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 690 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTGT TCAAAAAATC TCTGGCAATC TCAGAAACAT CACTAGGAAC CATTGGTTCT 60 TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATAA TCTTCCATTG CAAATCCTTA GTGTCGCGAT AAATCCAAAC GCGACACCCA 120 GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATCT CTGCCACAGT ACACCCTAAC GACCATATAT CATAACTCCT GCCATGAAAA 180 CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGATCA AAGATTCTGG GGGCGCGTAA GGTAGAGTCC CTCTGTTGCT CATCGCAGCA 240 CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTCATAT ATGCCACACC TTCGGGAACT CTCAACGACA ATCCAAAGTC AGCCAACTTT 300 AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGTGCA TCCCACCACG TTCAGCGTTG TTGAAAATCA AAACATTAGC AGGTTTAATA 360 TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATGAA CCCACCCTTT CTCATGAACG TGTTGAATAC CCTTTAAGAG TTGATATGCA 420 TAGAAACCTA CTTCCAC 313 |||||||||| ||||||| TAGAAACCTA CTTCCAC 437 hqPGS_C08HBa0320P23.1-_SGN-E236049+ (749 313) ******************************************************************************** EST sequence 123 -strand 553 n (File: SGN-E543609-) 1 CGGTGCTACG AGTGATACAA ACTCCGAGAT TTCAACAAGG CCATTGTCGT TTTTATCCGC 61 CTTTTGAATC AAAGTTTTCG AGCTGATCAG GACTGGTTTT AAACCAAGAG ACCTCAATAG 121 CGCGCCAAGC TCGAGTTGGG TTAGACTCCC ATCATCATTT CTGTCGAACG ATCGGAAAAT 181 TTCTCGCAGT TCAGCCAACT GCTCATCATC TAACTTAACA GGTGCTTTAT TGCTCATATT 241 TCTCTGTGAA GCAATAAATC AAACACTTGA TCTGCAGATT AAAATTGTCC TTCAAAGAAA 301 GAATATCAAT GGATACCCTT TTCCAACCAA CTGGGTACTC TGTTTTCCTG CTATTCGTGC 361 CGTCCTCTTT CTCTTGCTGT TCTACTGACC TTTTGACTAC TCTTTGCTCA ATTTTGTGTC 421 ACTTTCGAAT AGCTATTTTT CTTGGACTTG GTAATGGATC CACCAAATTC TATGAATTTG 481 TTGAATTACA AGGAAAAGTT ATACAGATTT GTAGAATTGA TATTGAAAGA AAATATTGAC 541 AACTTCTTCC CAA Predicted gene structure (within gDNA segment 1700 to 3462): Exon 1 2310 2862 ( 553 n); cDNA 1 553 ( 553 n); score: 0.992 MATCH C08HBa0320P23.1+ SGN-E543609- 0.992 553 1.000 C PGS_C08HBa0320P23.1+_SGN-E543609- (2310 2862) Alignment (genomic DNA sequence = upper lines): CGGTGCTACG AGTGATACAA ACTCCGAGAA TTCAACAAGG CCATTGTCGT TTTTATCCGC 2369 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CGGTGCTACG AGTGATACAA ACTCCGAGAT TTCAACAAGG CCATTGTCGT TTTTATCCGC 60 CTTTTGAATC AAAGTTT-CG AGCTGATCAG GACTTGGTTT TAAACCAAGA GACCTCAATA 2428 |||||||||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| CTTTTGAATC AAAGTTTTCG AGCTGATCAG GAC-TGGTTT TAAACCAAGA GACCTCAATA 119 GCGCGCCAAG CTCGAGTTGG GTTAGACTCC CATCATCATT TCTGTCGAAC GATCGGAAAA 2488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCGCCAAG CTCGAGTTGG GTTAGACTCC CATCATCATT TCTGTCGAAC GATCGGAAAA 179 TTTCTCGCAG TTCAGCCAAC TGCTCATCAT CTAACTTAAC AGGTGCTTTA TTGCTCATAT 2548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCGCAG TTCAGCCAAC TGCTCATCAT CTAACTTAAC AGGTGCTTTA TTGCTCATAT 239 TTCTCTGTGA AGCAATAAAT CAAACACTTG ATCTGCAGAT TAAAATTGTC CTTCAAAGAA 2608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTGTGA AGCAATAAAT CAAACACTTG ATCTGCAGAT TAAAATTGTC CTTCAAAGAA 299 AGAATATCAA TGGATACCCT TTTCCAACCA ACTGGGTACT CTGTTTTCCT GCTATTCGTG 2668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATATCAA TGGATACCCT TTTCCAACCA ACTGGGTACT CTGTTTTCCT GCTATTCGTG 359 CCGTCCTCTT TCTCTTGCTG TTCTACTGAC CTTTTGACTA CTCTTTGCTC AATTTTGTGT 2728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTCCTCTT TCTCTTGCTG TTCTACTGAC CTTTTGACTA CTCTTTGCTC AATTTTGTGT 419 CACTTTCGAA TAGCTATTTT TCTTGGACTT GGTAATGGAT CCACCAAATT CTATGAATTT 2788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTCGAA TAGCTATTTT TCTTGGACTT GGTAATGGAT CCACCAAATT CTATGAATTT 479 GTTGAATTAC AAGGAAAAGT TATACAGATT TGTAGAATTG ATATTGAAAG AAAATATTGA 2848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAATTAC AAGGAAAAGT TATACAGATT TGTAGAATTG ATATTGAAAG AAAATATTGA 539 CAACTTCTTC CCAA 2862 |||||||||| |||| CAACTTCTTC CCAA 553 hqPGS_C08HBa0320P23.1+_SGN-E543609- (2310 2862) ******************************************************************************** EST sequence 73 -strand 429 n (File: SGN-E304567-) 1 CAATAGCGCG CCAAGCTCGA GTCGGGTTAG ACTCCCATCA TCATTTCTGT CGAACGATCG 61 CAAAATTTCT CGCAGTTCAG CCAAGTGCTC ATCATGTAAC TGAACAGGTG CTTTATTGCT 121 CATATTTCTC TGTGAAGCAA TAAATCAAAC ACTTGATCTG CAGATTAAAA TTGTCCTGCA 181 AAGAAAGAAT ATCAATGGAT ACCCTTTTCC AACCAACTGG GTACTCTGTT TTCCTGCTAT 241 TCGTGCCGTC CTCTTTCTCT TGCTGTTCTA CTGACCTTTT GACTACTCTT TGCTCAATTT 301 TGTGTCACTT TCGAATAGCT ATTTTTCTTG GACTTGGTAA TGGATCCACC AAATTCTATG 361 AATTTGTTGA ATTACAAGGA AAAGTTATAC AGATTTGTAG AATTGATATT GAAAGAAAAT 421 ATTGACAAC Predicted gene structure (within gDNA segment 1814 to 3452): Exon 1 2424 2852 ( 429 n); cDNA 1 429 ( 429 n); score: 0.986 MATCH C08HBa0320P23.1+ SGN-E304567- 0.986 429 1.000 C PGS_C08HBa0320P23.1+_SGN-E304567- (2424 2852) Alignment (genomic DNA sequence = upper lines): CAATAGCGCG CCAAGCTCGA GTTGGGTTAG ACTCCCATCA TCATTTCTGT CGAACGATCG 2483 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CAATAGCGCG CCAAGCTCGA GTCGGGTTAG ACTCCCATCA TCATTTCTGT CGAACGATCG 60 GAAAATTTCT CGCAGTTCAG CCAACTGCTC ATCATCTAAC TTAACAGGTG CTTTATTGCT 2543 ||||||||| |||||||||| |||| ||||| ||||| |||| | |||||||| |||||||||| CAAAATTTCT CGCAGTTCAG CCAAGTGCTC ATCATGTAAC TGAACAGGTG CTTTATTGCT 120 CATATTTCTC TGTGAAGCAA TAAATCAAAC ACTTGATCTG CAGATTAAAA TTGTCCTTCA 2603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CATATTTCTC TGTGAAGCAA TAAATCAAAC ACTTGATCTG CAGATTAAAA TTGTCCTGCA 180 AAGAAAGAAT ATCAATGGAT ACCCTTTTCC AACCAACTGG GTACTCTGTT TTCCTGCTAT 2663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAGAAT ATCAATGGAT ACCCTTTTCC AACCAACTGG GTACTCTGTT TTCCTGCTAT 240 TCGTGCCGTC CTCTTTCTCT TGCTGTTCTA CTGACCTTTT GACTACTCTT TGCTCAATTT 2723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGCCGTC CTCTTTCTCT TGCTGTTCTA CTGACCTTTT GACTACTCTT TGCTCAATTT 300 TGTGTCACTT TCGAATAGCT ATTTTTCTTG GACTTGGTAA TGGATCCACC AAATTCTATG 2783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTCACTT TCGAATAGCT ATTTTTCTTG GACTTGGTAA TGGATCCACC AAATTCTATG 360 AATTTGTTGA ATTACAAGGA AAAGTTATAC AGATTTGTAG AATTGATATT GAAAGAAAAT 2843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGTTGA ATTACAAGGA AAAGTTATAC AGATTTGTAG AATTGATATT GAAAGAAAAT 420 ATTGACAAC 2852 ||||||||| ATTGACAAC 429 hqPGS_C08HBa0320P23.1+_SGN-E304567- (2424 2852) ******************************************************************************** EST sequence 150 +strand 740 n (File: SGN-E260815+) 1 GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT GACGATAAAA TGGTCGAGTT 61 CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA CCGGTTACGA AGTTAGCGGA 121 TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA AGTCCCGGAG TTGACGTGAG 181 TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG 241 GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG 301 TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG 361 GAACTGGATT TTAGTGTTCA CTGCATTTTC CGAGTTGTTA CCTCTTCTTG CTGTGGGTAA 421 CATTCCTCTG TTGAAGGTAG AAAAGATTAG CCAAGACGTA AATACAAACA GCTCGACTAT 481 AGAGAATGCG ACTACATTAT CAAGCCCTGT AGCCACCTTG TCCTTTAGTG CTACTGCCAC 541 TTTTGAAGTT CGAAGCCCCT CTAGAATACA GGTTGAATTC AAGGAAGGGA ATTTTAAACC 601 TCCAGAAATA AAATCGAACA TAAATCTGCC GGAAACTGTG GATTTGTTTG GGCAAAAGAT 661 AAGTCTCTCT CCTGTACAGC AATCTCTAGG TCCTCTGGAA AACGCTGTGG CAAGCATAGC 721 ACGAACTATT TCTGGTCAGC Predicted gene structure (within gDNA segment 10088 to 6334): Exon 1 9488 9114 ( 375 n); cDNA 1 375 ( 375 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 7521 7326 ( 196 n); cDNA 376 571 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 7112 6944 ( 169 n); cDNA 572 740 ( 169 n); score: 0.994 MATCH C08HBa0320P23.1- SGN-E260815+ 0.999 740 1.000 C PGS_C08HBa0320P23.1-_SGN-E260815+ (9488 9114,7521 7326,7112 6944) Alignment (genomic DNA sequence = upper lines): GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT GACGATAAAA TGGTCGAGTT 9429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT GACGATAAAA TGGTCGAGTT 60 CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA CCGGTTACGA AGTTAGCGGA 9369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA CCGGTTACGA AGTTAGCGGA 120 TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA AGTCCCGGAG TTGACGTGAG 9309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA AGTCCCGGAG TTGACGTGAG 180 TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG 9249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG 240 GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG 9189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG 300 TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG 9129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG 360 GAACTGGATT TTAGTGTGAG TTTTTTTGCT TCATTGCTGG ATCATTCAGT CACTTCTTTT 9069 |||||||||| ||||| GAACTGGATT TTAGT..... .......... .......... .......... .......... 375 ACTATAGTTC CTCCATTTAT TACGTTTTGT GTTGTTTTTA TATGAAACTA GCTGAGTTTT 9009 .......... .......... .......... .......... .......... .......... 375 GATATCTTCT GCAAGCGTGC TGGCTTTGGT TCGGAAAAAA TGGGTGGTTT ACACTTTACA 8949 .......... .......... .......... .......... .......... .......... 375 GGACAAACCA AATAACAATC TCTAATAAAT TGATATTGAT CTCACGGGGC TTATATTTAA 8889 .......... .......... .......... .......... .......... .......... 375 GGTTAATGGG TAGTTTCAGA TAATCAAATG ACTTTGATTT CATTATCTAT GGGTTAAGGC 8829 .......... .......... .......... .......... .......... .......... 375 ATTGATAGAA TGGGTACTGG TATGCTTATC TTGAGCATTG ACACCACAGA ACAAGTTGCT 8769 .......... .......... .......... .......... .......... .......... 375 CTCCCTAATT CTAGGTGCAT GATAGAAGTT AATCGTACAA TGTAGGCATT GCACCCAAAG 8709 .......... .......... .......... .......... .......... .......... 375 CAGTAGCTAG AACTTTATGA TGGGAGTTCA CTATGCAAGA TAGGTGCATC ATAACAGTTA 8649 .......... .......... .......... .......... .......... .......... 375 TAAGAGGGAT CTCGAGATTG GCCTCTAAAT AAGCACCTTA TGAGTTGAGC GGTCAGACGG 8589 .......... .......... .......... .......... .......... .......... 375 TTACTTGTCA ATATACTTGC ATTCGGCTGT ATCCTCCAGT TGTTAACAAC CATAATTAAA 8529 .......... .......... .......... .......... .......... .......... 375 GACCATGTAT CTTTGTTTGT CCTGTAATAA CATGCTTTGG ATTTCCGAGA ATTTCATAAA 8469 .......... .......... .......... .......... .......... .......... 375 CTAATTAGCC TGGTAATCTG GGAATAGGAC GAACCAATGC TTCTTGGATT ATTTTAATCT 8409 .......... .......... .......... .......... .......... .......... 375 TGATGCCATG TATTTTCAAC TAAGTATTGC ACTTTCTTCA CATCGCAACT ACCATTAATC 8349 .......... .......... .......... .......... .......... .......... 375 TAATCTAAAC AATTGTCTGC AAACTTTAAT GTGAAATGTA TTTTGTTTTT CCTTCATACC 8289 .......... .......... .......... .......... .......... .......... 375 CTTTTGGCTA GTCAAACTAG AATCTATTCA AGAGTGCAAC AAGAAAATTG TTGTAGTTAC 8229 .......... .......... .......... .......... .......... .......... 375 TGGAGCTTGA GCTCATGATT CATATTCATT CTATGGTTCA CATATCACAG AAGAAAACCT 8169 .......... .......... .......... .......... .......... .......... 375 GAAGGCTGAA GATTGTTGTT GTTATTATTA TGTCTTTGGT TTTACTGGGA AAGTCGAGTT 8109 .......... .......... .......... .......... .......... .......... 375 TTAGTAAGTA CTGTAATTTT AAATGCTTGG AAGTGGTGAT AGACTGTTTT TAATAGTTCT 8049 .......... .......... .......... .......... .......... .......... 375 GAAGTACAAT TTTATAGGAT TAAATCTATG AACTTAAAAT CGATGACATT TACTATCTTG 7989 .......... .......... .......... .......... .......... .......... 375 GTTCACATAT CACATAAAAA ACCCTGAAGG CTTAAGATAT GCCTTGTAAA GCTATATTTA 7929 .......... .......... .......... .......... .......... .......... 375 TAGTTGATAT CCTGTTCAGG GTTTATTCGT CTATAACATA GAGTAGGAAA ATGTCATTGA 7869 .......... .......... .......... .......... .......... .......... 375 GGCATAAATG TTGATGATAC TTGCTGTGTG CTATGCATTA TTAAAAGTTT ATTTCTTCAT 7809 .......... .......... .......... .......... .......... .......... 375 AAGTTTATTT TTAAAGATTT TTGGTTGAAC ACATCGACAA CACCTTAAAA TATGTTATCT 7749 .......... .......... .......... .......... .......... .......... 375 CCTTCAATTA TACACAATAG TCTTAATAAG CCGTCAGGCC TATTCGATGT CGATGTATAT 7689 .......... .......... .......... .......... .......... .......... 375 GAATAAAGGG ATGATTTGTA ACTTAGCCCA ATCTTAAGGG ACAATTTTGG GCTTTTCCTC 7629 .......... .......... .......... .......... .......... .......... 375 CTGAACATTG TAACTTTAGT TGTGAAATTT CATGCAGAAA CTGATTTGAA GTAAATGATA 7569 .......... .......... .......... .......... .......... .......... 375 AGTGATGTAT CAGCAAAGAA TCTTATTTTT CTTCCTCAAT CTGTCAGGTT CACTGCATTT 7509 ||| |||||||||| .......... .......... .......... .......... .......GTT CACTGCATTT 388 TCCGAGTTGT TACCTCTTCT TGCTGTGGGT AACATTCCTC TGTTGAAGGT AGAAAAGATT 7449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGAGTTGT TACCTCTTCT TGCTGTGGGT AACATTCCTC TGTTGAAGGT AGAAAAGATT 448 AGCCAAGACG TAAATACAAA CAGCTCGACT ATAGAGAATG CGACTACATT ATCAAGCCCT 7389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAGACG TAAATACAAA CAGCTCGACT ATAGAGAATG CGACTACATT ATCAAGCCCT 508 GTAGCCACCT TGTCCTTTAG TGCTACTGCC ACTTTTGAAG TTCGAAGCCC CTCTAGAATA 7329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCCACCT TGTCCTTTAG TGCTACTGCC ACTTTTGAAG TTCGAAGCCC CTCTAGAATA 568 CAGGTATACT CGTTGACTCC ATTCTGATTT CCTTAGAAAG GTACTTGCAG CAATTTTCTG 7269 ||| CAG....... .......... .......... .......... .......... .......... 571 CACAAAGAGA GAAAATGAGA ATTTTGGATC TAATTATGCA AGATATTGAG AAATTGTAGG 7209 .......... .......... .......... .......... .......... .......... 571 GGTCGATTAT GTTTTTTTGG TTAACTTCTG TAGAGTATGT TGGGAGTTTT TTAATTTTTC 7149 .......... .......... .......... .......... .......... .......... 571 CTTCCGCATT TGGCTGACAA CTGCTTACTT TTGCAGGTTG AATTCAAGGA AGGGAATTTT 7089 |||| |||||||||| |||||||||| .......... .......... .......... ......GTTG AATTCAAGGA AGGGAATTTT 595 AAACCTCCAG AAATAAAATC GAACATAAAT CTGCCGGAAA CTGTGGATTT GTTTGGGCAA 7029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTCCAG AAATAAAATC GAACATAAAT CTGCCGGAAA CTGTGGATTT GTTTGGGCAA 655 AAGATAAGTC TCTCTCCTGT ACAGCAATCT CTAGGTCCTC TGGAAAACGC TGTGGCAGGC 6969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAGATAAGTC TCTCTCCTGT ACAGCAATCT CTAGGTCCTC TGGAAAACGC TGTGGCAAGC 715 ATAGCACGAA CTATTTCTGG TCAGC 6944 |||||||||| |||||||||| ||||| ATAGCACGAA CTATTTCTGG TCAGC 740 hqPGS_C08HBa0320P23.1-_SGN-E260815+ (9488 9114,7521 7326,7112 6944) ******************************************************************************** EST sequence 109 +strand 545 n (File: SGN-E268455+) 1 GGAGTTGACG TGAGTGGTGA AGAGGACGAG AAGCTTCTAG AGCTGAAAAG GTGTTTGGTG 61 GATACAGTTT ATGGGACGGA TTTCGGATTT CGGGCTTCAT CAGAGATTCG GGCCGAGGCA 121 TTGGAGTTCG TTTGTCAGTT GGAGGCAGCC AATCCTTCTC CAGCACCAAC TGAGTCTCCT 181 GAGTTGCTTG ATGGGAACTG GATTTTAGTG TTCACTGCAT TTTCCGAGTT GTTACCTCTT 241 CTTGCTGTGG GTAACATTCC TCTGTTGAAG GTAGAAAAGA TTAGCCAAGA CGTAAATACA 301 AACAGCTCGA CTATAGAGAA TGCGACTACA TTATCAAGCC CTGTAGCCAC CTTGTCCTTT 361 AGTGCTACTG CCACTTTTGA AGTTCGAAGC CCCTCTAGAA TACAGGTTGA ATTCAAGGAA 421 GGGAATTTTA AACCTCCAGA AATAAAATCG AACATAAATC TGCCGGAAAC TGTGGATTTG 481 TTTGGGCAAA AGATAAGTCT CTCTCCTGTA CAGCAATCTC TAGGTCCTCT GGAAAACGCT 541 GTGGC Predicted gene structure (within gDNA segment 9922 to 6363): Exon 1 9322 9114 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 7521 7326 ( 196 n); cDNA 210 405 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 7112 6973 ( 140 n); cDNA 406 545 ( 140 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E268455+ 1.000 545 1.000 C PGS_C08HBa0320P23.1-_SGN-E268455+ (9322 9114,7521 7326,7112 6973) Alignment (genomic DNA sequence = upper lines): GGAGTTGACG TGAGTGGTGA AGAGGACGAG AAGCTTCTAG AGCTGAAAAG GTGTTTGGTG 9263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTTGACG TGAGTGGTGA AGAGGACGAG AAGCTTCTAG AGCTGAAAAG GTGTTTGGTG 60 GATACAGTTT ATGGGACGGA TTTCGGATTT CGGGCTTCAT CAGAGATTCG GGCCGAGGCA 9203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACAGTTT ATGGGACGGA TTTCGGATTT CGGGCTTCAT CAGAGATTCG GGCCGAGGCA 120 TTGGAGTTCG TTTGTCAGTT GGAGGCAGCC AATCCTTCTC CAGCACCAAC TGAGTCTCCT 9143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGTTCG TTTGTCAGTT GGAGGCAGCC AATCCTTCTC CAGCACCAAC TGAGTCTCCT 180 GAGTTGCTTG ATGGGAACTG GATTTTAGTG TGAGTTTTTT TGCTTCATTG CTGGATCATT 9083 |||||||||| |||||||||| ||||||||| GAGTTGCTTG ATGGGAACTG GATTTTAGT. .......... .......... .......... 209 CAGTCACTTC TTTTACTATA GTTCCTCCAT TTATTACGTT TTGTGTTGTT TTTATATGAA 9023 .......... .......... .......... .......... .......... .......... 209 ACTAGCTGAG TTTTGATATC TTCTGCAAGC GTGCTGGCTT TGGTTCGGAA AAAATGGGTG 8963 .......... .......... .......... .......... .......... .......... 209 GTTTACACTT TACAGGACAA ACCAAATAAC AATCTCTAAT AAATTGATAT TGATCTCACG 8903 .......... .......... .......... .......... .......... .......... 209 GGGCTTATAT TTAAGGTTAA TGGGTAGTTT CAGATAATCA AATGACTTTG ATTTCATTAT 8843 .......... .......... .......... .......... .......... .......... 209 CTATGGGTTA AGGCATTGAT AGAATGGGTA CTGGTATGCT TATCTTGAGC ATTGACACCA 8783 .......... .......... .......... .......... .......... .......... 209 CAGAACAAGT TGCTCTCCCT AATTCTAGGT GCATGATAGA AGTTAATCGT ACAATGTAGG 8723 .......... .......... .......... .......... .......... .......... 209 CATTGCACCC AAAGCAGTAG CTAGAACTTT ATGATGGGAG TTCACTATGC AAGATAGGTG 8663 .......... .......... .......... .......... .......... .......... 209 CATCATAACA GTTATAAGAG GGATCTCGAG ATTGGCCTCT AAATAAGCAC CTTATGAGTT 8603 .......... .......... .......... .......... .......... .......... 209 GAGCGGTCAG ACGGTTACTT GTCAATATAC TTGCATTCGG CTGTATCCTC CAGTTGTTAA 8543 .......... .......... .......... .......... .......... .......... 209 CAACCATAAT TAAAGACCAT GTATCTTTGT TTGTCCTGTA ATAACATGCT TTGGATTTCC 8483 .......... .......... .......... .......... .......... .......... 209 GAGAATTTCA TAAACTAATT AGCCTGGTAA TCTGGGAATA GGACGAACCA ATGCTTCTTG 8423 .......... .......... .......... .......... .......... .......... 209 GATTATTTTA ATCTTGATGC CATGTATTTT CAACTAAGTA TTGCACTTTC TTCACATCGC 8363 .......... .......... .......... .......... .......... .......... 209 AACTACCATT AATCTAATCT AAACAATTGT CTGCAAACTT TAATGTGAAA TGTATTTTGT 8303 .......... .......... .......... .......... .......... .......... 209 TTTTCCTTCA TACCCTTTTG GCTAGTCAAA CTAGAATCTA TTCAAGAGTG CAACAAGAAA 8243 .......... .......... .......... .......... .......... .......... 209 ATTGTTGTAG TTACTGGAGC TTGAGCTCAT GATTCATATT CATTCTATGG TTCACATATC 8183 .......... .......... .......... .......... .......... .......... 209 ACAGAAGAAA ACCTGAAGGC TGAAGATTGT TGTTGTTATT ATTATGTCTT TGGTTTTACT 8123 .......... .......... .......... .......... .......... .......... 209 GGGAAAGTCG AGTTTTAGTA AGTACTGTAA TTTTAAATGC TTGGAAGTGG TGATAGACTG 8063 .......... .......... .......... .......... .......... .......... 209 TTTTTAATAG TTCTGAAGTA CAATTTTATA GGATTAAATC TATGAACTTA AAATCGATGA 8003 .......... .......... .......... .......... .......... .......... 209 CATTTACTAT CTTGGTTCAC ATATCACATA AAAAACCCTG AAGGCTTAAG ATATGCCTTG 7943 .......... .......... .......... .......... .......... .......... 209 TAAAGCTATA TTTATAGTTG ATATCCTGTT CAGGGTTTAT TCGTCTATAA CATAGAGTAG 7883 .......... .......... .......... .......... .......... .......... 209 GAAAATGTCA TTGAGGCATA AATGTTGATG ATACTTGCTG TGTGCTATGC ATTATTAAAA 7823 .......... .......... .......... .......... .......... .......... 209 GTTTATTTCT TCATAAGTTT ATTTTTAAAG ATTTTTGGTT GAACACATCG ACAACACCTT 7763 .......... .......... .......... .......... .......... .......... 209 AAAATATGTT ATCTCCTTCA ATTATACACA ATAGTCTTAA TAAGCCGTCA GGCCTATTCG 7703 .......... .......... .......... .......... .......... .......... 209 ATGTCGATGT ATATGAATAA AGGGATGATT TGTAACTTAG CCCAATCTTA AGGGACAATT 7643 .......... .......... .......... .......... .......... .......... 209 TTGGGCTTTT CCTCCTGAAC ATTGTAACTT TAGTTGTGAA ATTTCATGCA GAAACTGATT 7583 .......... .......... .......... .......... .......... .......... 209 TGAAGTAAAT GATAAGTGAT GTATCAGCAA AGAATCTTAT TTTTCTTCCT CAATCTGTCA 7523 .......... .......... .......... .......... .......... .......... 209 GGTTCACTGC ATTTTCCGAG TTGTTACCTC TTCTTGCTGT GGGTAACATT CCTCTGTTGA 7463 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTCACTGC ATTTTCCGAG TTGTTACCTC TTCTTGCTGT GGGTAACATT CCTCTGTTGA 268 AGGTAGAAAA GATTAGCCAA GACGTAAATA CAAACAGCTC GACTATAGAG AATGCGACTA 7403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTAGAAAA GATTAGCCAA GACGTAAATA CAAACAGCTC GACTATAGAG AATGCGACTA 328 CATTATCAAG CCCTGTAGCC ACCTTGTCCT TTAGTGCTAC TGCCACTTTT GAAGTTCGAA 7343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTATCAAG CCCTGTAGCC ACCTTGTCCT TTAGTGCTAC TGCCACTTTT GAAGTTCGAA 388 GCCCCTCTAG AATACAGGTA TACTCGTTGA CTCCATTCTG ATTTCCTTAG AAAGGTACTT 7283 |||||||||| ||||||| GCCCCTCTAG AATACAG... .......... .......... .......... .......... 405 GCAGCAATTT TCTGCACAAA GAGAGAAAAT GAGAATTTTG GATCTAATTA TGCAAGATAT 7223 .......... .......... .......... .......... .......... .......... 405 TGAGAAATTG TAGGGGTCGA TTATGTTTTT TTGGTTAACT TCTGTAGAGT ATGTTGGGAG 7163 .......... .......... .......... .......... .......... .......... 405 TTTTTTAATT TTTCCTTCCG CATTTGGCTG ACAACTGCTT ACTTTTGCAG GTTGAATTCA 7103 |||||||||| .......... .......... .......... .......... .......... GTTGAATTCA 415 AGGAAGGGAA TTTTAAACCT CCAGAAATAA AATCGAACAT AAATCTGCCG GAAACTGTGG 7043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGGGAA TTTTAAACCT CCAGAAATAA AATCGAACAT AAATCTGCCG GAAACTGTGG 475 ATTTGTTTGG GCAAAAGATA AGTCTCTCTC CTGTACAGCA ATCTCTAGGT CCTCTGGAAA 6983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTTGG GCAAAAGATA AGTCTCTCTC CTGTACAGCA ATCTCTAGGT CCTCTGGAAA 535 ACGCTGTGGC 6973 |||||||||| ACGCTGTGGC 545 hqPGS_C08HBa0320P23.1-_SGN-E268455+ (9322 9114,7521 7326,7112 6973) ******************************************************************************** EST sequence 125 +strand 463 n (File: SGN-E291696+) 1 GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG 61 TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG 121 GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT 181 GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGTGT TCACTGCATT TTCCGAGTTG 241 TTACCTCTTC TTGCTGTGGG TAACATTCCT CTGTTGAAGG TAGAAAAGAT TAGCCAAGAC 301 GTAAATACAA ACAGCTCGAC TATAGAGAAT GCGACTACAT TATCAAGCCC TGTAGCCACC 361 TTGTCCTTTA GTGCTACTGC CACTTTTGAA GTTCGAAGCC CCTCTAGAAT ACAGGTTGAA 421 TTCAAGGAAG GGAATTTTAA ACCTCCAGAA ATAAAATCGA ACA Predicted gene structure (within gDNA segment 9931 to 6454): Exon 1 9331 9114 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 7521 7326 ( 196 n); cDNA 219 414 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 7112 7064 ( 49 n); cDNA 415 463 ( 49 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E291696+ 1.000 463 1.000 C PGS_C08HBa0320P23.1-_SGN-E291696+ (9331 9114,7521 7326,7112 7064) Alignment (genomic DNA sequence = upper lines): GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG 9272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG 60 TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG 9212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG 120 GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT 9152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT 180 GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGTGT GAGTTTTTTT GCTTCATTGC 9092 |||||||||| |||||||||| |||||||||| |||||||| GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGT.. .......... .......... 218 TGGATCATTC AGTCACTTCT TTTACTATAG TTCCTCCATT TATTACGTTT TGTGTTGTTT 9032 .......... .......... .......... .......... .......... .......... 218 TTATATGAAA CTAGCTGAGT TTTGATATCT TCTGCAAGCG TGCTGGCTTT GGTTCGGAAA 8972 .......... .......... .......... .......... .......... .......... 218 AAATGGGTGG TTTACACTTT ACAGGACAAA CCAAATAACA ATCTCTAATA AATTGATATT 8912 .......... .......... .......... .......... .......... .......... 218 GATCTCACGG GGCTTATATT TAAGGTTAAT GGGTAGTTTC AGATAATCAA ATGACTTTGA 8852 .......... .......... .......... .......... .......... .......... 218 TTTCATTATC TATGGGTTAA GGCATTGATA GAATGGGTAC TGGTATGCTT ATCTTGAGCA 8792 .......... .......... .......... .......... .......... .......... 218 TTGACACCAC AGAACAAGTT GCTCTCCCTA ATTCTAGGTG CATGATAGAA GTTAATCGTA 8732 .......... .......... .......... .......... .......... .......... 218 CAATGTAGGC ATTGCACCCA AAGCAGTAGC TAGAACTTTA TGATGGGAGT TCACTATGCA 8672 .......... .......... .......... .......... .......... .......... 218 AGATAGGTGC ATCATAACAG TTATAAGAGG GATCTCGAGA TTGGCCTCTA AATAAGCACC 8612 .......... .......... .......... .......... .......... .......... 218 TTATGAGTTG AGCGGTCAGA CGGTTACTTG TCAATATACT TGCATTCGGC TGTATCCTCC 8552 .......... .......... .......... .......... .......... .......... 218 AGTTGTTAAC AACCATAATT AAAGACCATG TATCTTTGTT TGTCCTGTAA TAACATGCTT 8492 .......... .......... .......... .......... .......... .......... 218 TGGATTTCCG AGAATTTCAT AAACTAATTA GCCTGGTAAT CTGGGAATAG GACGAACCAA 8432 .......... .......... .......... .......... .......... .......... 218 TGCTTCTTGG ATTATTTTAA TCTTGATGCC ATGTATTTTC AACTAAGTAT TGCACTTTCT 8372 .......... .......... .......... .......... .......... .......... 218 TCACATCGCA ACTACCATTA ATCTAATCTA AACAATTGTC TGCAAACTTT AATGTGAAAT 8312 .......... .......... .......... .......... .......... .......... 218 GTATTTTGTT TTTCCTTCAT ACCCTTTTGG CTAGTCAAAC TAGAATCTAT TCAAGAGTGC 8252 .......... .......... .......... .......... .......... .......... 218 AACAAGAAAA TTGTTGTAGT TACTGGAGCT TGAGCTCATG ATTCATATTC ATTCTATGGT 8192 .......... .......... .......... .......... .......... .......... 218 TCACATATCA CAGAAGAAAA CCTGAAGGCT GAAGATTGTT GTTGTTATTA TTATGTCTTT 8132 .......... .......... .......... .......... .......... .......... 218 GGTTTTACTG GGAAAGTCGA GTTTTAGTAA GTACTGTAAT TTTAAATGCT TGGAAGTGGT 8072 .......... .......... .......... .......... .......... .......... 218 GATAGACTGT TTTTAATAGT TCTGAAGTAC AATTTTATAG GATTAAATCT ATGAACTTAA 8012 .......... .......... .......... .......... .......... .......... 218 AATCGATGAC ATTTACTATC TTGGTTCACA TATCACATAA AAAACCCTGA AGGCTTAAGA 7952 .......... .......... .......... .......... .......... .......... 218 TATGCCTTGT AAAGCTATAT TTATAGTTGA TATCCTGTTC AGGGTTTATT CGTCTATAAC 7892 .......... .......... .......... .......... .......... .......... 218 ATAGAGTAGG AAAATGTCAT TGAGGCATAA ATGTTGATGA TACTTGCTGT GTGCTATGCA 7832 .......... .......... .......... .......... .......... .......... 218 TTATTAAAAG TTTATTTCTT CATAAGTTTA TTTTTAAAGA TTTTTGGTTG AACACATCGA 7772 .......... .......... .......... .......... .......... .......... 218 CAACACCTTA AAATATGTTA TCTCCTTCAA TTATACACAA TAGTCTTAAT AAGCCGTCAG 7712 .......... .......... .......... .......... .......... .......... 218 GCCTATTCGA TGTCGATGTA TATGAATAAA GGGATGATTT GTAACTTAGC CCAATCTTAA 7652 .......... .......... .......... .......... .......... .......... 218 GGGACAATTT TGGGCTTTTC CTCCTGAACA TTGTAACTTT AGTTGTGAAA TTTCATGCAG 7592 .......... .......... .......... .......... .......... .......... 218 AAACTGATTT GAAGTAAATG ATAAGTGATG TATCAGCAAA GAATCTTATT TTTCTTCCTC 7532 .......... .......... .......... .......... .......... .......... 218 AATCTGTCAG GTTCACTGCA TTTTCCGAGT TGTTACCTCT TCTTGCTGTG GGTAACATTC 7472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTTCACTGCA TTTTCCGAGT TGTTACCTCT TCTTGCTGTG GGTAACATTC 268 CTCTGTTGAA GGTAGAAAAG ATTAGCCAAG ACGTAAATAC AAACAGCTCG ACTATAGAGA 7412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGTTGAA GGTAGAAAAG ATTAGCCAAG ACGTAAATAC AAACAGCTCG ACTATAGAGA 328 ATGCGACTAC ATTATCAAGC CCTGTAGCCA CCTTGTCCTT TAGTGCTACT GCCACTTTTG 7352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCGACTAC ATTATCAAGC CCTGTAGCCA CCTTGTCCTT TAGTGCTACT GCCACTTTTG 388 AAGTTCGAAG CCCCTCTAGA ATACAGGTAT ACTCGTTGAC TCCATTCTGA TTTCCTTAGA 7292 |||||||||| |||||||||| |||||| AAGTTCGAAG CCCCTCTAGA ATACAG.... .......... .......... .......... 414 AAGGTACTTG CAGCAATTTT CTGCACAAAG AGAGAAAATG AGAATTTTGG ATCTAATTAT 7232 .......... .......... .......... .......... .......... .......... 414 GCAAGATATT GAGAAATTGT AGGGGTCGAT TATGTTTTTT TGGTTAACTT CTGTAGAGTA 7172 .......... .......... .......... .......... .......... .......... 414 TGTTGGGAGT TTTTTAATTT TTCCTTCCGC ATTTGGCTGA CAACTGCTTA CTTTTGCAGG 7112 | .......... .......... .......... .......... .......... .........G 415 TTGAATTCAA GGAAGGGAAT TTTAAACCTC CAGAAATAAA ATCGAACA 7064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTGAATTCAA GGAAGGGAAT TTTAAACCTC CAGAAATAAA ATCGAACA 463 hqPGS_C08HBa0320P23.1-_SGN-E291696+ (9331 9114,7521 7326,7112 7064) ******************************************************************************** EST sequence 30 -strand 421 n (File: SGN-E541495-) 1 CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 61 TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 121 GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 181 GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 241 GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 301 GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 361 TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTAAAAA AAAAAAAAAA AAAAAAAGAA 421 A Predicted gene structure (within gDNA segment 7479 to 5624): Exon 1 6869 6474 ( 396 n); cDNA 1 396 ( 396 n); score: 1.000 PPA cDNA 397 421 MATCH C08HBa0320P23.1- SGN-E541495- 1.000 396 0.941 C PGS_C08HBa0320P23.1-_SGN-E541495- (6869 6474) Alignment (genomic DNA sequence = upper lines): CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 6810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 60 TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 6750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 120 GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 6690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 180 GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 6630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 240 GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 6570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 300 GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 6510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 360 TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTA 6474 |||||||||| |||||||||| |||||||||| |||||| TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTA 396 hqPGS_C08HBa0320P23.1-_SGN-E541495- (6869 6474) ******************************************************************************** EST sequence 102 +strand 421 n (File: SGN-E541497+) 1 CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 61 TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 121 GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 181 GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 241 GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 301 GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 361 TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTAAAAA AAAAAAAAAA AAAAAAAAAA 421 A Predicted gene structure (within gDNA segment 7469 to 5614): Exon 1 6869 6474 ( 396 n); cDNA 1 396 ( 396 n); score: 1.000 PPA cDNA 397 421 MATCH C08HBa0320P23.1- SGN-E541497+ 1.000 396 0.941 C PGS_C08HBa0320P23.1-_SGN-E541497+ (6869 6474) Alignment (genomic DNA sequence = upper lines): CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 6810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 60 TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 6750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 120 GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 6690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 180 GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 6630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 240 GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 6570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 300 GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 6510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 360 TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTA 6474 |||||||||| |||||||||| |||||||||| |||||| TGGAAAGAAA ATAACTTAAC AATTACGTTT AATCTA 396 hqPGS_C08HBa0320P23.1-_SGN-E541497+ (6869 6474) ******************************************************************************** EST sequence 100 +strand 420 n (File: SGN-E297853+) 1 GGATCTCCAG AGGCGATGGT GGGCTTTTTG TGCTTGTTAA GGAAGGGAGT TCTCTTCTAT 61 ATTAGTAAGG TATCCATTAT CCTATATTGT GATTTACAAA TGTCTTAGGA ACTGCAATGG 121 TATGTACTGC TACATCGATT TATCGCGGGA TGTAGAGTTT AAAACTCCTT AGCTGTAAGG 181 TGGGACACTC TTTTAGGACT CAAGTACTTG CACTGAATTA TCTCAGGATC AAGCTGTGAG 241 ATTAGTCCTA GTAAGAAGTG TGCTGAAATA AAATGTGATA TAGCTTTGCA TTTTCCTATG 301 TAGTAAGATA ACGATGTTTC AGTAATTTGG AGGTCAATCA TCTGTAATTT CAGCTTATCT 361 GGAAAGAAAA TAACTTAACA ATTACGTTTA ATCTAAAAAA AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 7468 to 5614): Exon 1 6868 6474 ( 395 n); cDNA 1 395 ( 395 n); score: 1.000 PPA cDNA 396 420 MATCH C08HBa0320P23.1- SGN-E297853+ 1.000 395 0.940 C PGS_C08HBa0320P23.1-_SGN-E297853+ (6868 6474) Alignment (genomic DNA sequence = upper lines): GGATCTCCAG AGGCGATGGT GGGCTTTTTG TGCTTGTTAA GGAAGGGAGT TCTCTTCTAT 6809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTCCAG AGGCGATGGT GGGCTTTTTG TGCTTGTTAA GGAAGGGAGT TCTCTTCTAT 60 ATTAGTAAGG TATCCATTAT CCTATATTGT GATTTACAAA TGTCTTAGGA ACTGCAATGG 6749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTAAGG TATCCATTAT CCTATATTGT GATTTACAAA TGTCTTAGGA ACTGCAATGG 120 TATGTACTGC TACATCGATT TATCGCGGGA TGTAGAGTTT AAAACTCCTT AGCTGTAAGG 6689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTACTGC TACATCGATT TATCGCGGGA TGTAGAGTTT AAAACTCCTT AGCTGTAAGG 180 TGGGACACTC TTTTAGGACT CAAGTACTTG CACTGAATTA TCTCAGGATC AAGCTGTGAG 6629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGACACTC TTTTAGGACT CAAGTACTTG CACTGAATTA TCTCAGGATC AAGCTGTGAG 240 ATTAGTCCTA GTAAGAAGTG TGCTGAAATA AAATGTGATA TAGCTTTGCA TTTTCCTATG 6569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTCCTA GTAAGAAGTG TGCTGAAATA AAATGTGATA TAGCTTTGCA TTTTCCTATG 300 TAGTAAGATA ACGATGTTTC AGTAATTTGG AGGTCAATCA TCTGTAATTT CAGCTTATCT 6509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTAAGATA ACGATGTTTC AGTAATTTGG AGGTCAATCA TCTGTAATTT CAGCTTATCT 360 GGAAAGAAAA TAACTTAACA ATTACGTTTA ATCTA 6474 |||||||||| |||||||||| |||||||||| ||||| GGAAAGAAAA TAACTTAACA ATTACGTTTA ATCTA 395 hqPGS_C08HBa0320P23.1-_SGN-E297853+ (6868 6474) ******************************************************************************** EST sequence 58 -strand 466 n (File: SGN-E219074-) 1 CCAATTCCAG TGGAAGGACA AAATCCTGGC TTCTCACAAC CTACCTTATA AGGATATGCG 61 GATCTCCAGA GGCGATGGTG GGCTTTTTGT GCTTGTTAAG GAAGGGAGTT CTCTTCTATA 121 TTAGTAAGGT ATCCATTATC CTATATTGTG ATTTACAAAT GTCTTAGGAA CTGCAATGGT 181 ATGTACTGCT ACATCGATTT ATCGCGGGAT GTAGAGTTTA AAACTCCTTA GCTGTAAGGT 241 GGGACACTCT TTTAGGACTC AAGTACTTGC ACTGAATTAT CTCAGGATCA AGCTGTGAGA 301 TTAGTCCTAG TAAGAAGTGT GCTGAAATAA AATGTGATAT AGCTTTGCAT TTTCCTATGT 361 AGTAAGATAA CGATGTTTCA GTAATTTGGA GGTCAATCAT CTGTAATTTC AGCTTATCTG 421 GCAAGAAAAT AACTTAACAA TTACGTTTAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 7619 to 5718): Exon 1 6929 6479 ( 451 n); cDNA 1 449 ( 449 n); score: 0.993 PPA cDNA 450 466 MATCH C08HBa0320P23.1- SGN-E219074- 0.993 451 0.968 C PGS_C08HBa0320P23.1-_SGN-E219074- (6929 6479) Alignment (genomic DNA sequence = upper lines): CCAATTCCAG GTGGAAGGAC AAAATCCTGG CTTCTCACAA CCTACCTTGA TAAGGATATG 6870 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CCAATTCCA- GTGGAAGGAC AAAATCCTGG CTTCTCACAA CCTACCTT-A TAAGGATATG 58 CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 6810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATCTCCA GAGGCGATGG TGGGCTTTTT GTGCTTGTTA AGGAAGGGAG TTCTCTTCTA 118 TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 6750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGTAAG GTATCCATTA TCCTATATTG TGATTTACAA ATGTCTTAGG AACTGCAATG 178 GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 6690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTACTG CTACATCGAT TTATCGCGGG ATGTAGAGTT TAAAACTCCT TAGCTGTAAG 238 GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 6630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGACACT CTTTTAGGAC TCAAGTACTT GCACTGAATT ATCTCAGGAT CAAGCTGTGA 298 GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 6570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAGTCCT AGTAAGAAGT GTGCTGAAAT AAAATGTGAT ATAGCTTTGC ATTTTCCTAT 358 GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 6510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTAAGAT AACGATGTTT CAGTAATTTG GAGGTCAATC ATCTGTAATT TCAGCTTATC 418 TGGAAAGAAA ATAACTTAAC AATTACGTTT A 6479 ||| |||||| |||||||||| |||||||||| | TGGCAAGAAA ATAACTTAAC AATTACGTTT A 449 hqPGS_C08HBa0320P23.1-_SGN-E219074- (6929 6479) ******************************************************************************** EST sequence 122 +strand 684 n (File: SGN-E320178+) 1 AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 61 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 121 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 181 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 241 CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 301 AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT 361 TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC 421 GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 481 TCTCCTGAGT TGCTTGATGG GAACTGGATT TTAGTGTTCA CTGCATTTTT CCGAGTTGTT 541 ACCTCTTCTT GCTGTGGGTA ACATTCCTCT GTTGAAAGTA GAAAAGATTA GCCAAGACGT 601 AAATACAAAC AGCTCGACTA TAGAGAATGC GACTACATTA TCNAAGCCTG TAGCCACTTT 661 GTCCTTTAGT GCTACTGCCA CTTT Predicted gene structure (within gDNA segment 10228 to 6744): Exon 1 9628 9114 ( 515 n); cDNA 1 515 ( 515 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 0.95) Exon 2 7521 7354 ( 168 n); cDNA 516 684 ( 169 n); score: 0.955 MATCH C08HBa0320P23.1- SGN-E320178+ 0.989 683 0.999 C PGS_C08HBa0320P23.1-_SGN-E320178+ (9628 9114,7521 7354) Alignment (genomic DNA sequence = upper lines): AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 9569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 60 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 9509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 120 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 9449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 180 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 9389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 240 CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 9329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 300 AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT 9269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT 360 TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC 9209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC 420 GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 9149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 480 TCTCCTGAGT TGCTTGATGG GAACTGGATT TTAGTGTGAG TTTTTTTGCT TCATTGCTGG 9089 |||||||||| |||||||||| |||||||||| ||||| TCTCCTGAGT TGCTTGATGG GAACTGGATT TTAGT..... .......... .......... 515 ATCATTCAGT CACTTCTTTT ACTATAGTTC CTCCATTTAT TACGTTTTGT GTTGTTTTTA 9029 .......... .......... .......... .......... .......... .......... 515 TATGAAACTA GCTGAGTTTT GATATCTTCT GCAAGCGTGC TGGCTTTGGT TCGGAAAAAA 8969 .......... .......... .......... .......... .......... .......... 515 TGGGTGGTTT ACACTTTACA GGACAAACCA AATAACAATC TCTAATAAAT TGATATTGAT 8909 .......... .......... .......... .......... .......... .......... 515 CTCACGGGGC TTATATTTAA GGTTAATGGG TAGTTTCAGA TAATCAAATG ACTTTGATTT 8849 .......... .......... .......... .......... .......... .......... 515 CATTATCTAT GGGTTAAGGC ATTGATAGAA TGGGTACTGG TATGCTTATC TTGAGCATTG 8789 .......... .......... .......... .......... .......... .......... 515 ACACCACAGA ACAAGTTGCT CTCCCTAATT CTAGGTGCAT GATAGAAGTT AATCGTACAA 8729 .......... .......... .......... .......... .......... .......... 515 TGTAGGCATT GCACCCAAAG CAGTAGCTAG AACTTTATGA TGGGAGTTCA CTATGCAAGA 8669 .......... .......... .......... .......... .......... .......... 515 TAGGTGCATC ATAACAGTTA TAAGAGGGAT CTCGAGATTG GCCTCTAAAT AAGCACCTTA 8609 .......... .......... .......... .......... .......... .......... 515 TGAGTTGAGC GGTCAGACGG TTACTTGTCA ATATACTTGC ATTCGGCTGT ATCCTCCAGT 8549 .......... .......... .......... .......... .......... .......... 515 TGTTAACAAC CATAATTAAA GACCATGTAT CTTTGTTTGT CCTGTAATAA CATGCTTTGG 8489 .......... .......... .......... .......... .......... .......... 515 ATTTCCGAGA ATTTCATAAA CTAATTAGCC TGGTAATCTG GGAATAGGAC GAACCAATGC 8429 .......... .......... .......... .......... .......... .......... 515 TTCTTGGATT ATTTTAATCT TGATGCCATG TATTTTCAAC TAAGTATTGC ACTTTCTTCA 8369 .......... .......... .......... .......... .......... .......... 515 CATCGCAACT ACCATTAATC TAATCTAAAC AATTGTCTGC AAACTTTAAT GTGAAATGTA 8309 .......... .......... .......... .......... .......... .......... 515 TTTTGTTTTT CCTTCATACC CTTTTGGCTA GTCAAACTAG AATCTATTCA AGAGTGCAAC 8249 .......... .......... .......... .......... .......... .......... 515 AAGAAAATTG TTGTAGTTAC TGGAGCTTGA GCTCATGATT CATATTCATT CTATGGTTCA 8189 .......... .......... .......... .......... .......... .......... 515 CATATCACAG AAGAAAACCT GAAGGCTGAA GATTGTTGTT GTTATTATTA TGTCTTTGGT 8129 .......... .......... .......... .......... .......... .......... 515 TTTACTGGGA AAGTCGAGTT TTAGTAAGTA CTGTAATTTT AAATGCTTGG AAGTGGTGAT 8069 .......... .......... .......... .......... .......... .......... 515 AGACTGTTTT TAATAGTTCT GAAGTACAAT TTTATAGGAT TAAATCTATG AACTTAAAAT 8009 .......... .......... .......... .......... .......... .......... 515 CGATGACATT TACTATCTTG GTTCACATAT CACATAAAAA ACCCTGAAGG CTTAAGATAT 7949 .......... .......... .......... .......... .......... .......... 515 GCCTTGTAAA GCTATATTTA TAGTTGATAT CCTGTTCAGG GTTTATTCGT CTATAACATA 7889 .......... .......... .......... .......... .......... .......... 515 GAGTAGGAAA ATGTCATTGA GGCATAAATG TTGATGATAC TTGCTGTGTG CTATGCATTA 7829 .......... .......... .......... .......... .......... .......... 515 TTAAAAGTTT ATTTCTTCAT AAGTTTATTT TTAAAGATTT TTGGTTGAAC ACATCGACAA 7769 .......... .......... .......... .......... .......... .......... 515 CACCTTAAAA TATGTTATCT CCTTCAATTA TACACAATAG TCTTAATAAG CCGTCAGGCC 7709 .......... .......... .......... .......... .......... .......... 515 TATTCGATGT CGATGTATAT GAATAAAGGG ATGATTTGTA ACTTAGCCCA ATCTTAAGGG 7649 .......... .......... .......... .......... .......... .......... 515 ACAATTTTGG GCTTTTCCTC CTGAACATTG TAACTTTAGT TGTGAAATTT CATGCAGAAA 7589 .......... .......... .......... .......... .......... .......... 515 CTGATTTGAA GTAAATGATA AGTGATGTAT CAGCAAAGAA TCTTATTTTT CTTCCTCAAT 7529 .......... .......... .......... .......... .......... .......... 515 CTGTCAGGTT CACTGCA-TT TTCCGAGTTG TTACCTCTTC TTGCTGTGGG TAACATTCCT 7470 ||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| .......GTT CACTGCATTT TTCCGAGTTG TTACCTCTTC TTGCTGTGGG TAACATTCCT 568 CTGTTGAAGG TAGAAAAGAT TAGCCAAGAC GTAAATACAA ACAGCTCGAC TATAGAGAAT 7410 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTGAAAG TAGAAAAGAT TAGCCAAGAC GTAAATACAA ACAGCTCGAC TATAGAGAAT 628 GCGACTACAT TATCAAGCCC TGTAGCCACC TTGTCCTTTA GTGCTACTGC CACTTT 7354 |||||||||| |||| | || ||||||||| |||||||||| |||||||||| |||||| GCGACTACAT TATCNAAGCC TGTAGCCACT TTGTCCTTTA GTGCTACTGC CACTTT 684 hqPGS_C08HBa0320P23.1-_SGN-E320178+ (9628 9114,7521 7354) ******************************************************************************** EST sequence 78 +strand 371 n (File: SGN-E337846+) 1 ATGATGATGA GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA 61 AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC 121 GGGCTTCATC AGAGATTCGG GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA 181 ATCCTTCTCC AGCACCAACT GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGTGT 241 TCACTGCATT TTCCGAGTTG TTACCTCTTC TTGCTGTGGG TAACATTCCT CTGTTGAAGG 301 TAGAAAAGAT TAGCCAAGAC GTAAATACAA ACAGCTCGAC TATAGAGAAT GCGACTACAT 361 TATCAAGCCC T Predicted gene structure (within gDNA segment 9951 to 6779): Exon 1 9351 9114 ( 238 n); cDNA 1 238 ( 238 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 7521 7389 ( 133 n); cDNA 239 371 ( 133 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E337846+ 1.000 371 1.000 C PGS_C08HBa0320P23.1-_SGN-E337846+ (9351 9114,7521 7389) Alignment (genomic DNA sequence = upper lines): ATGATGATGA GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA 9292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGATGA GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA 60 AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC 9232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC 120 GGGCTTCATC AGAGATTCGG GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA 9172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTTCATC AGAGATTCGG GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA 180 ATCCTTCTCC AGCACCAACT GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGTGT 9112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATCCTTCTCC AGCACCAACT GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGT.. 238 GAGTTTTTTT GCTTCATTGC TGGATCATTC AGTCACTTCT TTTACTATAG TTCCTCCATT 9052 .......... .......... .......... .......... .......... .......... 238 TATTACGTTT TGTGTTGTTT TTATATGAAA CTAGCTGAGT TTTGATATCT TCTGCAAGCG 8992 .......... .......... .......... .......... .......... .......... 238 TGCTGGCTTT GGTTCGGAAA AAATGGGTGG TTTACACTTT ACAGGACAAA CCAAATAACA 8932 .......... .......... .......... .......... .......... .......... 238 ATCTCTAATA AATTGATATT GATCTCACGG GGCTTATATT TAAGGTTAAT GGGTAGTTTC 8872 .......... .......... .......... .......... .......... .......... 238 AGATAATCAA ATGACTTTGA TTTCATTATC TATGGGTTAA GGCATTGATA GAATGGGTAC 8812 .......... .......... .......... .......... .......... .......... 238 TGGTATGCTT ATCTTGAGCA TTGACACCAC AGAACAAGTT GCTCTCCCTA ATTCTAGGTG 8752 .......... .......... .......... .......... .......... .......... 238 CATGATAGAA GTTAATCGTA CAATGTAGGC ATTGCACCCA AAGCAGTAGC TAGAACTTTA 8692 .......... .......... .......... .......... .......... .......... 238 TGATGGGAGT TCACTATGCA AGATAGGTGC ATCATAACAG TTATAAGAGG GATCTCGAGA 8632 .......... .......... .......... .......... .......... .......... 238 TTGGCCTCTA AATAAGCACC TTATGAGTTG AGCGGTCAGA CGGTTACTTG TCAATATACT 8572 .......... .......... .......... .......... .......... .......... 238 TGCATTCGGC TGTATCCTCC AGTTGTTAAC AACCATAATT AAAGACCATG TATCTTTGTT 8512 .......... .......... .......... .......... .......... .......... 238 TGTCCTGTAA TAACATGCTT TGGATTTCCG AGAATTTCAT AAACTAATTA GCCTGGTAAT 8452 .......... .......... .......... .......... .......... .......... 238 CTGGGAATAG GACGAACCAA TGCTTCTTGG ATTATTTTAA TCTTGATGCC ATGTATTTTC 8392 .......... .......... .......... .......... .......... .......... 238 AACTAAGTAT TGCACTTTCT TCACATCGCA ACTACCATTA ATCTAATCTA AACAATTGTC 8332 .......... .......... .......... .......... .......... .......... 238 TGCAAACTTT AATGTGAAAT GTATTTTGTT TTTCCTTCAT ACCCTTTTGG CTAGTCAAAC 8272 .......... .......... .......... .......... .......... .......... 238 TAGAATCTAT TCAAGAGTGC AACAAGAAAA TTGTTGTAGT TACTGGAGCT TGAGCTCATG 8212 .......... .......... .......... .......... .......... .......... 238 ATTCATATTC ATTCTATGGT TCACATATCA CAGAAGAAAA CCTGAAGGCT GAAGATTGTT 8152 .......... .......... .......... .......... .......... .......... 238 GTTGTTATTA TTATGTCTTT GGTTTTACTG GGAAAGTCGA GTTTTAGTAA GTACTGTAAT 8092 .......... .......... .......... .......... .......... .......... 238 TTTAAATGCT TGGAAGTGGT GATAGACTGT TTTTAATAGT TCTGAAGTAC AATTTTATAG 8032 .......... .......... .......... .......... .......... .......... 238 GATTAAATCT ATGAACTTAA AATCGATGAC ATTTACTATC TTGGTTCACA TATCACATAA 7972 .......... .......... .......... .......... .......... .......... 238 AAAACCCTGA AGGCTTAAGA TATGCCTTGT AAAGCTATAT TTATAGTTGA TATCCTGTTC 7912 .......... .......... .......... .......... .......... .......... 238 AGGGTTTATT CGTCTATAAC ATAGAGTAGG AAAATGTCAT TGAGGCATAA ATGTTGATGA 7852 .......... .......... .......... .......... .......... .......... 238 TACTTGCTGT GTGCTATGCA TTATTAAAAG TTTATTTCTT CATAAGTTTA TTTTTAAAGA 7792 .......... .......... .......... .......... .......... .......... 238 TTTTTGGTTG AACACATCGA CAACACCTTA AAATATGTTA TCTCCTTCAA TTATACACAA 7732 .......... .......... .......... .......... .......... .......... 238 TAGTCTTAAT AAGCCGTCAG GCCTATTCGA TGTCGATGTA TATGAATAAA GGGATGATTT 7672 .......... .......... .......... .......... .......... .......... 238 GTAACTTAGC CCAATCTTAA GGGACAATTT TGGGCTTTTC CTCCTGAACA TTGTAACTTT 7612 .......... .......... .......... .......... .......... .......... 238 AGTTGTGAAA TTTCATGCAG AAACTGATTT GAAGTAAATG ATAAGTGATG TATCAGCAAA 7552 .......... .......... .......... .......... .......... .......... 238 GAATCTTATT TTTCTTCCTC AATCTGTCAG GTTCACTGCA TTTTCCGAGT TGTTACCTCT 7492 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTCACTGCA TTTTCCGAGT TGTTACCTCT 268 TCTTGCTGTG GGTAACATTC CTCTGTTGAA GGTAGAAAAG ATTAGCCAAG ACGTAAATAC 7432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGCTGTG GGTAACATTC CTCTGTTGAA GGTAGAAAAG ATTAGCCAAG ACGTAAATAC 328 AAACAGCTCG ACTATAGAGA ATGCGACTAC ATTATCAAGC CCT 7389 |||||||||| |||||||||| |||||||||| |||||||||| ||| AAACAGCTCG ACTATAGAGA ATGCGACTAC ATTATCAAGC CCT 371 hqPGS_C08HBa0320P23.1-_SGN-E337846+ (9351 9114,7521 7389) ******************************************************************************** EST sequence 98 +strand 294 n (File: SGN-E264669+) 1 TATGATGATG AGTGGGGTAA TGGAAGTCCC GGAGTTGACG TGAGTGGTGT TGACGCACGA 61 GAAGCTTCTA GAGCTGAAAA GGTGTTTGGT GGATACAGTT TATGGGACGG ATTTCGGATT 121 TCGGGCTTCA TCAGAGATTC GGGCCGAGGC ATTGGAGTTC GTTTGTCAGT TGGAGGCAGC 181 CAATCCTTCT CCACCACCAA CTGAGTCTCC TGAGTTGCTT GATGGGAACT GGATTTTAGT 241 GTTCACTGCA TTTTCCGAGT TGTTACCTCT TCTTGCTGTG GGTAACATTC CTCT Predicted gene structure (within gDNA segment 9952 to 6858): Exon 1 9352 9114 ( 239 n); cDNA 1 240 ( 240 n); score: 0.973 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 0.98), Pa: 0.862 (s: 1.00) Exon 2 7521 7468 ( 54 n); cDNA 241 294 ( 54 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E264669+ 0.978 293 0.997 C PGS_C08HBa0320P23.1-_SGN-E264669+ (9352 9114,7521 7468) Alignment (genomic DNA sequence = upper lines): TATGATGATG AGTGGGGTAA TGGAAGTCCC GGAGTTGACG TGAGTGGTGA AGA-GGACGA 9294 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| || | |||| TATGATGATG AGTGGGGTAA TGGAAGTCCC GGAGTTGACG TGAGTGGTGT TGACGCACGA 60 GAAGCTTCTA GAGCTGAAAA GGTGTTTGGT GGATACAGTT TATGGGACGG ATTTCGGATT 9234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTTCTA GAGCTGAAAA GGTGTTTGGT GGATACAGTT TATGGGACGG ATTTCGGATT 120 TCGGGCTTCA TCAGAGATTC GGGCCGAGGC ATTGGAGTTC GTTTGTCAGT TGGAGGCAGC 9174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGGCTTCA TCAGAGATTC GGGCCGAGGC ATTGGAGTTC GTTTGTCAGT TGGAGGCAGC 180 CAATCCTTCT CCAGCACCAA CTGAGTCTCC TGAGTTGCTT GATGGGAACT GGATTTTAGT 9114 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCCTTCT CCACCACCAA CTGAGTCTCC TGAGTTGCTT GATGGGAACT GGATTTTAGT 240 GTGAGTTTTT TTGCTTCATT GCTGGATCAT TCAGTCACTT CTTTTACTAT AGTTCCTCCA 9054 .......... .......... .......... .......... .......... .......... 240 TTTATTACGT TTTGTGTTGT TTTTATATGA AACTAGCTGA GTTTTGATAT CTTCTGCAAG 8994 .......... .......... .......... .......... .......... .......... 240 CGTGCTGGCT TTGGTTCGGA AAAAATGGGT GGTTTACACT TTACAGGACA AACCAAATAA 8934 .......... .......... .......... .......... .......... .......... 240 CAATCTCTAA TAAATTGATA TTGATCTCAC GGGGCTTATA TTTAAGGTTA ATGGGTAGTT 8874 .......... .......... .......... .......... .......... .......... 240 TCAGATAATC AAATGACTTT GATTTCATTA TCTATGGGTT AAGGCATTGA TAGAATGGGT 8814 .......... .......... .......... .......... .......... .......... 240 ACTGGTATGC TTATCTTGAG CATTGACACC ACAGAACAAG TTGCTCTCCC TAATTCTAGG 8754 .......... .......... .......... .......... .......... .......... 240 TGCATGATAG AAGTTAATCG TACAATGTAG GCATTGCACC CAAAGCAGTA GCTAGAACTT 8694 .......... .......... .......... .......... .......... .......... 240 TATGATGGGA GTTCACTATG CAAGATAGGT GCATCATAAC AGTTATAAGA GGGATCTCGA 8634 .......... .......... .......... .......... .......... .......... 240 GATTGGCCTC TAAATAAGCA CCTTATGAGT TGAGCGGTCA GACGGTTACT TGTCAATATA 8574 .......... .......... .......... .......... .......... .......... 240 CTTGCATTCG GCTGTATCCT CCAGTTGTTA ACAACCATAA TTAAAGACCA TGTATCTTTG 8514 .......... .......... .......... .......... .......... .......... 240 TTTGTCCTGT AATAACATGC TTTGGATTTC CGAGAATTTC ATAAACTAAT TAGCCTGGTA 8454 .......... .......... .......... .......... .......... .......... 240 ATCTGGGAAT AGGACGAACC AATGCTTCTT GGATTATTTT AATCTTGATG CCATGTATTT 8394 .......... .......... .......... .......... .......... .......... 240 TCAACTAAGT ATTGCACTTT CTTCACATCG CAACTACCAT TAATCTAATC TAAACAATTG 8334 .......... .......... .......... .......... .......... .......... 240 TCTGCAAACT TTAATGTGAA ATGTATTTTG TTTTTCCTTC ATACCCTTTT GGCTAGTCAA 8274 .......... .......... .......... .......... .......... .......... 240 ACTAGAATCT ATTCAAGAGT GCAACAAGAA AATTGTTGTA GTTACTGGAG CTTGAGCTCA 8214 .......... .......... .......... .......... .......... .......... 240 TGATTCATAT TCATTCTATG GTTCACATAT CACAGAAGAA AACCTGAAGG CTGAAGATTG 8154 .......... .......... .......... .......... .......... .......... 240 TTGTTGTTAT TATTATGTCT TTGGTTTTAC TGGGAAAGTC GAGTTTTAGT AAGTACTGTA 8094 .......... .......... .......... .......... .......... .......... 240 ATTTTAAATG CTTGGAAGTG GTGATAGACT GTTTTTAATA GTTCTGAAGT ACAATTTTAT 8034 .......... .......... .......... .......... .......... .......... 240 AGGATTAAAT CTATGAACTT AAAATCGATG ACATTTACTA TCTTGGTTCA CATATCACAT 7974 .......... .......... .......... .......... .......... .......... 240 AAAAAACCCT GAAGGCTTAA GATATGCCTT GTAAAGCTAT ATTTATAGTT GATATCCTGT 7914 .......... .......... .......... .......... .......... .......... 240 TCAGGGTTTA TTCGTCTATA ACATAGAGTA GGAAAATGTC ATTGAGGCAT AAATGTTGAT 7854 .......... .......... .......... .......... .......... .......... 240 GATACTTGCT GTGTGCTATG CATTATTAAA AGTTTATTTC TTCATAAGTT TATTTTTAAA 7794 .......... .......... .......... .......... .......... .......... 240 GATTTTTGGT TGAACACATC GACAACACCT TAAAATATGT TATCTCCTTC AATTATACAC 7734 .......... .......... .......... .......... .......... .......... 240 AATAGTCTTA ATAAGCCGTC AGGCCTATTC GATGTCGATG TATATGAATA AAGGGATGAT 7674 .......... .......... .......... .......... .......... .......... 240 TTGTAACTTA GCCCAATCTT AAGGGACAAT TTTGGGCTTT TCCTCCTGAA CATTGTAACT 7614 .......... .......... .......... .......... .......... .......... 240 TTAGTTGTGA AATTTCATGC AGAAACTGAT TTGAAGTAAA TGATAAGTGA TGTATCAGCA 7554 .......... .......... .......... .......... .......... .......... 240 AAGAATCTTA TTTTTCTTCC TCAATCTGTC AGGTTCACTG CATTTTCCGA GTTGTTACCT 7494 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTTCACTG CATTTTCCGA GTTGTTACCT 268 CTTCTTGCTG TGGGTAACAT TCCTCT 7468 |||||||||| |||||||||| |||||| CTTCTTGCTG TGGGTAACAT TCCTCT 294 hqPGS_C08HBa0320P23.1-_SGN-E264669+ (9352 9114,7521 7468) ******************************************************************************** EST sequence 111 +strand 597 n (File: SGN-E329534+) 1 GCCATTTCCA CGGTTACACC GCCGGAGGAC GTCCGTTTCC AAAAGTAATT AAATATGTCC 61 ACTCTCTACA ATCCTCTAAT TTTCACCATT AAAAACCCAA AAGGCAGCCT TAAACCTCAC 121 ACTTCCCTTC CTTCTTCTGT CCCGACTTTT AGGCTTCGTA AATTTCAAAA TTTCTCAGTT 181 CAATCCTCCA TTTCCTCATC CAATGAGCCG GAAAAACCCA CCTCTATTAC ACCGGATAAT 241 GATAAAGCTG ACGATAAAAT GGTCGAGTTC GTGGATGAAT GGGGAGAGAA GTCGGAGCCC 301 GAACCCGGAC CGGTTACGAA GTTAGCGGAT TCGGATCCTC CGGAGTATGA TGATGAGTGG 361 GGTAATGGAA GTCCCGGAGT TGACGTGAGT GGTGAAGAGG ACGAGAAGCT TCTAGAGCTG 421 AAAAGGTGTT TGGTGGATAC AGTTTATGGG ACGGATTTCG GATTTCGGGC TTCATCAGAG 481 ATTCGGGCCG AGGCATTGGA GTTCGTTTGT CAGTTGGAGG CAGCCAATCC TTCTCCAGCA 541 CCAACTGAGT CTCCTGAGTT GCTTGATGGG AACTGGATTT TAGTGTTCAC TGCATTT Predicted gene structure (within gDNA segment 10297 to 8392): Exon 1 9697 9114 ( 584 n); cDNA 1 584 ( 584 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E329534+ 1.000 584 0.978 C PGS_C08HBa0320P23.1-_SGN-E329534+ (9697 9114) Alignment (genomic DNA sequence = upper lines): GCCATTTCCA CGGTTACACC GCCGGAGGAC GTCCGTTTCC AAAAGTAATT AAATATGTCC 9638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTTCCA CGGTTACACC GCCGGAGGAC GTCCGTTTCC AAAAGTAATT AAATATGTCC 60 ACTCTCTACA ATCCTCTAAT TTTCACCATT AAAAACCCAA AAGGCAGCCT TAAACCTCAC 9578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTCTACA ATCCTCTAAT TTTCACCATT AAAAACCCAA AAGGCAGCCT TAAACCTCAC 120 ACTTCCCTTC CTTCTTCTGT CCCGACTTTT AGGCTTCGTA AATTTCAAAA TTTCTCAGTT 9518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCCCTTC CTTCTTCTGT CCCGACTTTT AGGCTTCGTA AATTTCAAAA TTTCTCAGTT 180 CAATCCTCCA TTTCCTCATC CAATGAGCCG GAAAAACCCA CCTCTATTAC ACCGGATAAT 9458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCCTCCA TTTCCTCATC CAATGAGCCG GAAAAACCCA CCTCTATTAC ACCGGATAAT 240 GATAAAGCTG ACGATAAAAT GGTCGAGTTC GTGGATGAAT GGGGAGAGAA GTCGGAGCCC 9398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAAGCTG ACGATAAAAT GGTCGAGTTC GTGGATGAAT GGGGAGAGAA GTCGGAGCCC 300 GAACCCGGAC CGGTTACGAA GTTAGCGGAT TCGGATCCTC CGGAGTATGA TGATGAGTGG 9338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCCGGAC CGGTTACGAA GTTAGCGGAT TCGGATCCTC CGGAGTATGA TGATGAGTGG 360 GGTAATGGAA GTCCCGGAGT TGACGTGAGT GGTGAAGAGG ACGAGAAGCT TCTAGAGCTG 9278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATGGAA GTCCCGGAGT TGACGTGAGT GGTGAAGAGG ACGAGAAGCT TCTAGAGCTG 420 AAAAGGTGTT TGGTGGATAC AGTTTATGGG ACGGATTTCG GATTTCGGGC TTCATCAGAG 9218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGTGTT TGGTGGATAC AGTTTATGGG ACGGATTTCG GATTTCGGGC TTCATCAGAG 480 ATTCGGGCCG AGGCATTGGA GTTCGTTTGT CAGTTGGAGG CAGCCAATCC TTCTCCAGCA 9158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGGGCCG AGGCATTGGA GTTCGTTTGT CAGTTGGAGG CAGCCAATCC TTCTCCAGCA 540 CCAACTGAGT CTCCTGAGTT GCTTGATGGG AACTGGATTT TAGT 9114 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAACTGAGT CTCCTGAGTT GCTTGATGGG AACTGGATTT TAGT 584 hqPGS_C08HBa0320P23.1-_SGN-E329534+ (9697 9114) ******************************************************************************** EST sequence 129 +strand 583 n (File: SGN-E247707+) 1 CGCCATTTCC ACGGTTACAC CGCCGGAGGA CGTCCGTTTC CAAAAGTAAT TAAATATGTC 61 CACTCTCTAC AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA 121 CACTTCCCTT CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT 181 TCAATCCTCC ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA 241 TGATAAAGCT GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC 301 CGAACCCGGA CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG 361 GGGTAATGGA AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT 421 GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA 481 GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC 541 ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT TTA Predicted gene structure (within gDNA segment 10298 to 8506): Exon 1 9698 9116 ( 583 n); cDNA 1 583 ( 583 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E247707+ 1.000 583 1.000 C PGS_C08HBa0320P23.1-_SGN-E247707+ (9698 9116) Alignment (genomic DNA sequence = upper lines): CGCCATTTCC ACGGTTACAC CGCCGGAGGA CGTCCGTTTC CAAAAGTAAT TAAATATGTC 9639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCATTTCC ACGGTTACAC CGCCGGAGGA CGTCCGTTTC CAAAAGTAAT TAAATATGTC 60 CACTCTCTAC AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA 9579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCTCTAC AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA 120 CACTTCCCTT CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT 9519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCCCTT CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT 180 TCAATCCTCC ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA 9459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATCCTCC ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA 240 TGATAAAGCT GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC 9399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAAGCT GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC 300 CGAACCCGGA CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG 9339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCCGGA CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG 360 GGGTAATGGA AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT 9279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAATGGA AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT 420 GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA 9219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA 480 GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC 9159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC 540 ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT TTA 9116 |||||||||| |||||||||| |||||||||| |||||||||| ||| ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT TTA 583 hqPGS_C08HBa0320P23.1-_SGN-E247707+ (9698 9116) ******************************************************************************** EST sequence 71 +strand 198 n (File: SGN-E294794+) 1 GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC 61 GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG 121 GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT 181 TTAATGGTCA CTGCATTT Predicted gene structure (within gDNA segment 9898 to 8356): Exon 1 9298 9116 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E294794+ 1.000 183 0.924 C PGS_C08HBa0320P23.1-_SGN-E294794+ (9298 9116) Alignment (genomic DNA sequence = upper lines): GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC 9239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGAGAAGC TTCTAGAGCT GAAAAGGTGT TTGGTGGATA CAGTTTATGG GACGGATTTC 60 GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG 9179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTTCGGG CTTCATCAGA GATTCGGGCC GAGGCATTGG AGTTCGTTTG TCAGTTGGAG 120 GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT 9119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCAATC CTTCTCCAGC ACCAACTGAG TCTCCTGAGT TGCTTGATGG GAACTGGATT 180 TTA 9116 ||| TTA 183 hqPGS_C08HBa0320P23.1-_SGN-E294794+ (9298 9116) ******************************************************************************** EST sequence 107 +strand 445 n (File: SGN-E268341+) 1 CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 61 CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 121 AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 181 CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 241 GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 301 ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 361 TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 421 AGTTGCTTGA TGGGAACTGG ATTTT Predicted gene structure (within gDNA segment 10161 to 8507): Exon 1 9561 9117 ( 445 n); cDNA 1 445 ( 445 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E268341+ 1.000 445 1.000 C PGS_C08HBa0320P23.1-_SGN-E268341+ (9561 9117) Alignment (genomic DNA sequence = upper lines): CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 9502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 60 CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 9442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 120 AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 9382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 180 CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 9322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 240 GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 9262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 300 ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 9202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 360 TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 9142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 420 AGTTGCTTGA TGGGAACTGG ATTTT 9117 |||||||||| |||||||||| ||||| AGTTGCTTGA TGGGAACTGG ATTTT 445 hqPGS_C08HBa0320P23.1-_SGN-E268341+ (9561 9117) ******************************************************************************** EST sequence 124 +strand 505 n (File: SGN-E320074+) 1 AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 61 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 121 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 181 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 241 CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 301 AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACCAGAATC TTCTAGAGCT GAAAAGGTGT 361 TTGGTGGATA CAGCTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCAGGCC 421 GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 481 TCTCCTGAAG TGCTTGATGG GAACT Predicted gene structure (within gDNA segment 10228 to 8361): Exon 1 9628 9124 ( 505 n); cDNA 1 505 ( 505 n); score: 0.988 MATCH C08HBa0320P23.1- SGN-E320074+ 0.988 505 1.000 C PGS_C08HBa0320P23.1-_SGN-E320074+ (9628 9124) Alignment (genomic DNA sequence = upper lines): AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 9569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 60 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 9509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 120 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 9449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 180 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 9389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 240 CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 9329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTACGA AGTTAGCGGA TTCGGATCCT CCGGAGTATG ATGATGAGTG GGGTAATGGA 300 AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACGAGAAGC TTCTAGAGCT GAAAAGGTGT 9269 |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| |||||||||| AGTCCCGGAG TTGACGTGAG TGGTGAAGAG GACCAGAATC TTCTAGAGCT GAAAAGGTGT 360 TTGGTGGATA CAGTTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCGGGCC 9209 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTGGTGGATA CAGCTTATGG GACGGATTTC GGATTTCGGG CTTCATCAGA GATTCAGGCC 420 GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 9149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATTGG AGTTCGTTTG TCAGTTGGAG GCAGCCAATC CTTCTCCAGC ACCAACTGAG 480 TCTCCTGAGT TGCTTGATGG GAACT 9124 |||||||| |||||||||| ||||| TCTCCTGAAG TGCTTGATGG GAACT 505 hqPGS_C08HBa0320P23.1-_SGN-E320074+ (9628 9124) ******************************************************************************** EST sequence 106 +strand 438 n (File: SGN-E268581+) 1 CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 61 CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 121 AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 181 CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 241 GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 301 ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 361 TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 421 AGTTGCTTGA TGGGAACT Predicted gene structure (within gDNA segment 10161 to 8514): Exon 1 9561 9124 ( 438 n); cDNA 1 438 ( 438 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E268581+ 1.000 438 1.000 C PGS_C08HBa0320P23.1-_SGN-E268581+ (9561 9124) Alignment (genomic DNA sequence = upper lines): CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 9502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT 60 CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 9442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA 120 AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 9382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA 180 CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 9322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAAGTCCCG 240 GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 9262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG TGTTTGGTGG 300 ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 9202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG GCCGAGGCAT 360 TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 9142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT GAGTCTCCTG 420 AGTTGCTTGA TGGGAACT 9124 |||||||||| |||||||| AGTTGCTTGA TGGGAACT 438 hqPGS_C08HBa0320P23.1-_SGN-E268581+ (9561 9124) ******************************************************************************** EST sequence 128 +strand 599 n (File: SGN-E320171+) 1 TCAAATCACC GTCGACAACC ACCGCTTCCG CCGCCATTTC CACGGTTACA CCGCCGGAGG 61 ACGTCCGTTT CCAAAAGTAA TTAAATATGT CCACTCTCTA CAATCCTCTA ATTTTCACCA 121 TTAAAAACCC AAAAGGCAGC CTTAAACCTC ACACTTCCCT TCCTTCTTCT GTCCCGACTT 181 TTAGGCTTCG TAAATTTCAA AATTTCTCAG TTCAATCCTC CATTTCCTCA TCCAATGAGC 241 CGGAAAAACC CACCTCTATT ACACCGGATA ATGATAAAGC TGACGATAAA ATGGTCGAGT 301 TCGTGGATGA ATGGGGAGAG AAGTCGGAGC CCGAACCCGG ACCGGTTACG AAGTTAGCGG 361 ATTCGGATCC TCCGGAGTAT GATGATGAGT GGGGTAATGG AAAGTCCGGA GTTGACGTGA 421 GTGGTGAAGA GGACGAGAAG CTTCTAGAGC TGAAAAGGTG TTTGGTGGAT ACAGTTTATG 481 GGACGGATTT CGGATTTCGG GCTTCATCAG AGATTCGGGC CGAGGCATTT GGAGTCGTTT 541 GTCAGTTGGA GGCAGCCAAT CCTTTTCTCA GCACAACTGA GTCTCCTGAG TTGCTTGAT Predicted gene structure (within gDNA segment 10329 to 8521): Exon 1 9729 9131 ( 599 n); cDNA 1 599 ( 599 n); score: 0.981 MATCH C08HBa0320P23.1- SGN-E320171+ 0.981 599 1.000 C PGS_C08HBa0320P23.1-_SGN-E320171+ (9729 9131) Alignment (genomic DNA sequence = upper lines): TCAAATCACC GTCGACAACC ACCGCTTCCG CCGCCATTTC CACGGTTACA CCGCCGGAGG 9670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATCACC GTCGACAACC ACCGCTTCCG CCGCCATTTC CACGGTTACA CCGCCGGAGG 60 ACGTCCGTTT CCAAAAGTAA TTAAATATGT CCACTCTCTA CAATCCTCTA ATTTTCACCA 9610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTCCGTTT CCAAAAGTAA TTAAATATGT CCACTCTCTA CAATCCTCTA ATTTTCACCA 120 TTAAAAACCC AAAAGGCAGC CTTAAACCTC ACACTTCCCT TCCTTCTTCT GTCCCGACTT 9550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAACCC AAAAGGCAGC CTTAAACCTC ACACTTCCCT TCCTTCTTCT GTCCCGACTT 180 TTAGGCTTCG TAAATTTCAA AATTTCTCAG TTCAATCCTC CATTTCCTCA TCCAATGAGC 9490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGCTTCG TAAATTTCAA AATTTCTCAG TTCAATCCTC CATTTCCTCA TCCAATGAGC 240 CGGAAAAACC CACCTCTATT ACACCGGATA ATGATAAAGC TGACGATAAA ATGGTCGAGT 9430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAAAACC CACCTCTATT ACACCGGATA ATGATAAAGC TGACGATAAA ATGGTCGAGT 300 TCGTGGATGA ATGGGGAGAG AAGTCGGAGC CCGAACCCGG ACCGGTTACG AAGTTAGCGG 9370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGGATGA ATGGGGAGAG AAGTCGGAGC CCGAACCCGG ACCGGTTACG AAGTTAGCGG 360 ATTCGGATCC TCCGGAGTAT GATGATGAGT GGGGTAATGG AAGTCCCGGA GTTGACGTGA 9310 |||||||||| |||||||||| |||||||||| |||||||||| || ||||| |||||||||| ATTCGGATCC TCCGGAGTAT GATGATGAGT GGGGTAATGG AAAGTCCGGA GTTGACGTGA 420 GTGGTGAAGA GGACGAGAAG CTTCTAGAGC TGAAAAGGTG TTTGGTGGAT ACAGTTTATG 9250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGAAGA GGACGAGAAG CTTCTAGAGC TGAAAAGGTG TTTGGTGGAT ACAGTTTATG 480 GGACGGATTT CGGATTTCGG GCTTCATCAG AGATTCGGGC CGAGGCATTG GAGTTCGTTT 9190 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | |||||| GGACGGATTT CGGATTTCGG GCTTCATCAG AGATTCGGGC CGAGGCATTT GGAGTCGTTT 540 GTCAGTTGGA GGCAGCCAAT CCTTCTC-CA GCACCAACTG AGTCTCCTGA GTTGCTTGAT 9131 |||||||||| |||||||||| |||| || || ||| |||||| |||||||||| |||||||||| GTCAGTTGGA GGCAGCCAAT CCTTTTCTCA GCA-CAACTG AGTCTCCTGA GTTGCTTGAT 599 hqPGS_C08HBa0320P23.1-_SGN-E320171+ (9729 9131) ******************************************************************************** EST sequence 74 +strand 573 n (File: SGN-E203261+) 1 GCACGAGATA AAACCGAAGG TCTCAAATCA CCGTCGACAA CCACCGCTTC CGCCGCCATT 61 TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC 121 TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC 181 CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC 241 TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA 301 GCTGACGATA AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC 361 GGACCGGTTA CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT 421 GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG 481 TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG 541 GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAG Predicted gene structure (within gDNA segment 10414 to 8569): Exon 1 9744 9179 ( 566 n); cDNA 8 573 ( 566 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E203261+ 1.000 566 0.988 C PGS_C08HBa0320P23.1-_SGN-E203261+ (9744 9179) Alignment (genomic DNA sequence = upper lines): ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGC TTCCGCCGCC ATTTCCACGG 9685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGC TTCCGCCGCC ATTTCCACGG 67 TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 9625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 127 CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 9565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 187 CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 9505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 247 CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 9445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 307 ATAAAATGGT CGAGTTCGTG GATGAATGGG GAGAGAAGTC GGAGCCCGAA CCCGGACCGG 9385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAATGGT CGAGTTCGTG GATGAATGGG GAGAGAAGTC GGAGCCCGAA CCCGGACCGG 367 TTACGAAGTT AGCGGATTCG GATCCTCCGG AGTATGATGA TGAGTGGGGT AATGGAAGTC 9325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGAAGTT AGCGGATTCG GATCCTCCGG AGTATGATGA TGAGTGGGGT AATGGAAGTC 427 CCGGAGTTGA CGTGAGTGGT GAAGAGGACG AGAAGCTTCT AGAGCTGAAA AGGTGTTTGG 9265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGTTGA CGTGAGTGGT GAAGAGGACG AGAAGCTTCT AGAGCTGAAA AGGTGTTTGG 487 TGGATACAGT TTATGGGACG GATTTCGGAT TTCGGGCTTC ATCAGAGATT CGGGCCGAGG 9205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATACAGT TTATGGGACG GATTTCGGAT TTCGGGCTTC ATCAGAGATT CGGGCCGAGG 547 CATTGGAGTT CGTTTGTCAG TTGGAG 9179 |||||||||| |||||||||| |||||| CATTGGAGTT CGTTTGTCAG TTGGAG 573 hqPGS_C08HBa0320P23.1-_SGN-E203261+ (9744 9179) ******************************************************************************** EST sequence 112 +strand 506 n (File: SGN-E243032+) 1 CGCCGCCATT TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT 61 GTCCACTCTC TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC 121 TCACACTTCC CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC 181 AGTTCAATCC TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA 241 TAATGATAAA GCTGACGATA AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA 301 GCCCGAACCC GGACCGGTTA CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA 361 GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA 421 GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC 481 AGAGATTCGG GCCGAGGCAT TGGAGT Predicted gene structure (within gDNA segment 10301 to 8586): Exon 1 9701 9196 ( 506 n); cDNA 1 506 ( 506 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E243032+ 1.000 506 1.000 C PGS_C08HBa0320P23.1-_SGN-E243032+ (9701 9196) Alignment (genomic DNA sequence = upper lines): CGCCGCCATT TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT 9642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGCCATT TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT 60 GTCCACTCTC TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC 9582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCACTCTC TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC 120 TCACACTTCC CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC 9522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACACTTCC CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC 180 AGTTCAATCC TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA 9462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAATCC TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA 240 TAATGATAAA GCTGACGATA AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA 9402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGATAAA GCTGACGATA AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA 300 GCCCGAACCC GGACCGGTTA CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA 9342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGAACCC GGACCGGTTA CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA 360 GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA 9282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGGTAAT GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA 420 GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC 9222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAAAGG TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC 480 AGAGATTCGG GCCGAGGCAT TGGAGT 9196 |||||||||| |||||||||| |||||| AGAGATTCGG GCCGAGGCAT TGGAGT 506 hqPGS_C08HBa0320P23.1-_SGN-E243032+ (9701 9196) ******************************************************************************** EST sequence 142 +strand 457 n (File: SGN-E287646+) 1 GGTTACACCG CCGGAGGACG TCCGTTTCCA AAAGTAATTA AATATGTCCA CTCTCTACAA 61 TCCTCTAATT TTCACCATTA AAAACCCAAA AGGCAGCCTT AAACCTCACA CTTCCCTTCC 121 TTCTTCTGTC CCGACTTTTA AGCTTCGTAA ATTTCAAAAT TTCTCAGATC AATCCTCCAT 181 TTCCTCATCC AATGAGCCGG AAAAACCCAC CTCTATTACA CCGGATAATG ATAAAGCTGA 241 CGATAAAATG GTCGAGTTCG TGGATGAATG GGGAGAGAAG TCGGAGCCCG AACCCGGACC 301 GGTTACGAAG TTAGCGGATT CGGATCCTCC GGAGTATGAT GATGAGTGGG GTAATGGAAG 361 TCCCGGAGTT GACGTGAGTG GTGAAGAAGA CGAGAAGCTT CTAGAGCTGA AAAGGTGTTT 421 GGTGGATACA CCTTATGGGA CGGATTTCGG ATTTCGG Predicted gene structure (within gDNA segment 10286 to 8620): Exon 1 9686 9230 ( 457 n); cDNA 1 457 ( 457 n); score: 0.989 MATCH C08HBa0320P23.1- SGN-E287646+ 0.989 457 1.000 C PGS_C08HBa0320P23.1-_SGN-E287646+ (9686 9230) Alignment (genomic DNA sequence = upper lines): GGTTACACCG CCGGAGGACG TCCGTTTCCA AAAGTAATTA AATATGTCCA CTCTCTACAA 9627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTACACCG CCGGAGGACG TCCGTTTCCA AAAGTAATTA AATATGTCCA CTCTCTACAA 60 TCCTCTAATT TTCACCATTA AAAACCCAAA AGGCAGCCTT AAACCTCACA CTTCCCTTCC 9567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCTAATT TTCACCATTA AAAACCCAAA AGGCAGCCTT AAACCTCACA CTTCCCTTCC 120 TTCTTCTGTC CCGACTTTTA GGCTTCGTAA ATTTCAAAAT TTCTCAGTTC AATCCTCCAT 9507 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| TTCTTCTGTC CCGACTTTTA AGCTTCGTAA ATTTCAAAAT TTCTCAGATC AATCCTCCAT 180 TTCCTCATCC AATGAGCCGG AAAAACCCAC CTCTATTACA CCGGATAATG ATAAAGCTGA 9447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCATCC AATGAGCCGG AAAAACCCAC CTCTATTACA CCGGATAATG ATAAAGCTGA 240 CGATAAAATG GTCGAGTTCG TGGATGAATG GGGAGAGAAG TCGGAGCCCG AACCCGGACC 9387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATAAAATG GTCGAGTTCG TGGATGAATG GGGAGAGAAG TCGGAGCCCG AACCCGGACC 300 GGTTACGAAG TTAGCGGATT CGGATCCTCC GGAGTATGAT GATGAGTGGG GTAATGGAAG 9327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTACGAAG TTAGCGGATT CGGATCCTCC GGAGTATGAT GATGAGTGGG GTAATGGAAG 360 TCCCGGAGTT GACGTGAGTG GTGAAGAGGA CGAGAAGCTT CTAGAGCTGA AAAGGTGTTT 9267 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TCCCGGAGTT GACGTGAGTG GTGAAGAAGA CGAGAAGCTT CTAGAGCTGA AAAGGTGTTT 420 GGTGGATACA GTTTATGGGA CGGATTTCGG ATTTCGG 9230 |||||||||| |||||||| |||||||||| ||||||| GGTGGATACA CCTTATGGGA CGGATTTCGG ATTTCGG 457 hqPGS_C08HBa0320P23.1-_SGN-E287646+ (9686 9230) ******************************************************************************** EST sequence 147 +strand 404 n (File: SGN-E292686+) 1 CTCAAATTAT TCGTCGACAA CCACCGTTTC CGCCGCCATT TCCACGGTTA CACCGCCGGA 61 GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC TACAATCCTC TAATTTTCAC 121 CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC CTTCCTTCTT CTGTCCCGAC 181 TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT CATCCAATGA 241 GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA AAATGGTCGA 301 GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA CGAAGTTAGC 361 GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAA Predicted gene structure (within gDNA segment 10574 to 8718): Exon 1 9730 9328 ( 403 n); cDNA 1 404 ( 404 n); score: 0.986 MATCH C08HBa0320P23.1- SGN-E292686+ 0.986 403 0.998 C PGS_C08HBa0320P23.1-_SGN-E292686+ (9730 9328) Alignment (genomic DNA sequence = upper lines): CTCAAATCAC -CGTCGACAA CCACCGCTTC CGCCGCCATT TCCACGGTTA CACCGCCGGA 9672 ||||||| | ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAATTAT TCGTCGACAA CCACCGTTTC CGCCGCCATT TCCACGGTTA CACCGCCGGA 60 GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC TACAATCCTC TAATTTTCAC 9612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC TACAATCCTC TAATTTTCAC 120 CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC CTTCCTTCTT CTGTCCCGAC 9552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC CTTCCTTCTT CTGTCCCGAC 180 TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT CATCCAATGA 9492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC TCCATTTCCT CATCCAATGA 240 GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA AAATGGTCGA 9432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA GCTGACGATA AAATGGTCGA 300 GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA CGAAGTTAGC 9372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC GGACCGGTTA CGAAGTTAGC 360 GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAA 9328 |||||||||| |||||||||| |||||||||| |||||||||| |||| GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT GGAA 404 hqPGS_C08HBa0320P23.1-_SGN-E292686+ (9730 9328) ******************************************************************************** EST sequence 140 +strand 262 n (File: SGN-E320774+) 1 AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 61 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 121 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 181 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 241 CCGGTTACGA AGTTAGCGGA TC Predicted gene structure (within gDNA segment 10228 to 8748): Exon 1 9628 9368 ( 261 n); cDNA 1 261 ( 261 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E320774+ 1.000 261 0.996 C PGS_C08HBa0320P23.1-_SGN-E320774+ (9628 9368) Alignment (genomic DNA sequence = upper lines): AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 9569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTCTAA TTTTCACCAT TAAAAACCCA AAAGGCAGCC TTAAACCTCA CACTTCCCTT 60 CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 9509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTTCTG TCCCGACTTT TAGGCTTCGT AAATTTCAAA ATTTCTCAGT TCAATCCTCC 120 ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 9449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCTCAT CCAATGAGCC GGAAAAACCC ACCTCTATTA CACCGGATAA TGATAAAGCT 180 GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 9389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGATAAAA TGGTCGAGTT CGTGGATGAA TGGGGAGAGA AGTCGGAGCC CGAACCCGGA 240 CCGGTTACGA AGTTAGCGGA T 9368 |||||||||| |||||||||| | CCGGTTACGA AGTTAGCGGA T 261 hqPGS_C08HBa0320P23.1-_SGN-E320774+ (9628 9368) ******************************************************************************** EST sequence 134 +strand 317 n (File: SGN-E277271+) 1 GCACGAGATA AAACCGAAGG TCTCAAATCA CCGTCGACAA CCACCGGTTC CGCCGCCATT 61 TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC 121 TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC 181 CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC 241 TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA 301 GCTGACGATA AAATGGT Predicted gene structure (within gDNA segment 10414 to 8825): Exon 1 9744 9435 ( 310 n); cDNA 8 317 ( 310 n); score: 0.997 MATCH C08HBa0320P23.1- SGN-E277271+ 0.997 310 0.978 C PGS_C08HBa0320P23.1-_SGN-E277271+ (9744 9435) Alignment (genomic DNA sequence = upper lines): ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGC TTCCGCCGCC ATTTCCACGG 9685 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGG TTCCGCCGCC ATTTCCACGG 67 TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 9625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 127 CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 9565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 187 CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 9505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 247 CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 9445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 307 ATAAAATGGT 9435 |||||||||| ATAAAATGGT 317 hqPGS_C08HBa0320P23.1-_SGN-E277271+ (9744 9435) ******************************************************************************** EST sequence 11 -strand 750 n (File: SGN-E372219-) 1 CAACATGCTG GTGTCCCTGG TCACATTTAT CCTCTAGCAA TATTGTGCCA TGATATTATG 61 CCCCCTCCCG CCCAGGTTGA GAAAAATATC GGAGAGAAAA GAGTTGTATC TTTTCATGGA 121 GCTGGCATAT CTGTGGCACC CAAAATTGAT TTTCATGAGG TTGCTGGTGC TTTGGAGGAC 181 CCTGAGGCTA AGATGGTATA TACAAAGGCA ATTTATGATT CTGTAAGCCA GCAGTATAAT 241 GTGCTAAATT CTGCTATACA TGGCAAACAA GGACTGGAGG CTTCAATACC TAGTGTTTCA 301 TTGTCACAAC CATGGCAGTA GCTTCTCTTC CAACTTTATT TTTCATACCT TGTTGCTGTA 361 GTCAGTTTTG CAGATGTTTG TTTGGCAGTT ACTATCAAAT CACAAGGATT ACACTCACAA 421 TCTTTCCACA TACCACGCTT GCATGTGGTT AGTCTCTGCG GAAAGTTGAT ACAAACAAAG 481 TAATTCTTGA AGTTACAGCA AACATAATCT GAAGGATTTT TTTTTGGCAG GGTTAGATGA 541 TTCTTTTGAC ACGAATGTAC AGTTGCTTTA CATTGTATTT GTATCAAATG TTAGATTCAA 601 ATTTGTTAGT AATGATAGCT TTCAAGTACT GTTATGACTT TCTAAGGTTT AGTGTTAGTA 661 GCTATTCTAG ATTGCTGCTC ATCTTACCTT TGAAGTGGTA ATCCAATTTG TTGGGAAATA 721 TAATATTTGA TGCTCTGCTA AAAAAAAAAA Predicted gene structure (within gDNA segment 13367 to 9884): Exon 1 12757 12683 ( 75 n); cDNA 1 75 ( 75 n); score: 1.000 Intron 1 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 1.00) Exon 2 12607 12497 ( 111 n); cDNA 76 186 ( 111 n); score: 1.000 Intron 2 12496 11241 (1256 n); Pd: 0.994 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 11240 11062 ( 179 n); cDNA 187 365 ( 179 n); score: 1.000 Intron 3 11061 10959 ( 103 n); Pd: 0.959 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 10958 10584 ( 375 n); cDNA 366 740 ( 375 n); score: 1.000 PPA cDNA 741 750 MATCH C08HBa0320P23.1- SGN-E372219- 1.000 740 0.987 C PGS_C08HBa0320P23.1-_SGN-E372219- (12757 12683,12607 12497,11240 11062,10958 10584) Alignment (genomic DNA sequence = upper lines): CAACATGCTG GTGTCCCTGG TCACATTTAT CCTCTAGCAA TATTGTGCCA TGATATTATG 12698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATGCTG GTGTCCCTGG TCACATTTAT CCTCTAGCAA TATTGTGCCA TGATATTATG 60 CCCCCTCCCG CCCAGGTTGG TCCTGTGTCA ATTATGTTTG TTTCTGTGAT GACTATGTTT 12638 |||||||||| ||||| CCCCCTCCCG CCCAG..... .......... .......... .......... .......... 75 TTTTACATAT CCCTGCTTGC GATAGTACAG GTTGAGAAAA ATATCGGAGA GAAAAGAGTT 12578 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGAGAAAA ATATCGGAGA GAAAAGAGTT 105 GTATCTTTTC ATGGAGCTGG CATATCTGTG GCACCCAAAA TTGATTTTCA TGAGGTTGCT 12518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCTTTTC ATGGAGCTGG CATATCTGTG GCACCCAAAA TTGATTTTCA TGAGGTTGCT 165 GGTGCTTTGG AGGACCCTGA GGTTAGTTTT TATGGGAAGT CCACTTTGGT TTAATACTTC 12458 |||||||||| |||||||||| | GGTGCTTTGG AGGACCCTGA G......... .......... .......... .......... 186 AAATTATTGG AAGCTTTTCT TAAACTAAAT TTGGCAGCCT AATGAGAGGT TTAGTGATAT 12398 .......... .......... .......... .......... .......... .......... 186 TTGTTGGTGA ACCTTTTGGG GGGGGGGGTC ATTCTATTTA ATAGAGAATG AAGGAGGAGA 12338 .......... .......... .......... .......... .......... .......... 186 AGGGAAGTTG GACCAAACTC TTTCTCTTTC CTATTTGAGA CCCAAATGAA CAGCTAGTTG 12278 .......... .......... .......... .......... .......... .......... 186 ACCTTTGCTA AGAGGGGCGC AGGTTCAGCA GAAATTTTGA TTCCTGCAGT TGAGCTTTTT 12218 .......... .......... .......... .......... .......... .......... 186 CTTGTTGGAA AAGTTAAGAA GTAAAGCTCC AAAGGAACTT TCAATATGCA AATAAAACAT 12158 .......... .......... .......... .......... .......... .......... 186 TCATCTAATA CTGTTTTGTT TATTTATTTT TTGTCAAGTT AATTCTATAA ACTGAAGAAA 12098 .......... .......... .......... .......... .......... .......... 186 AGATATGCAT CTACAAGCTC TCTGAGGATA GTTAAATCTG TCCCCAAACC ATAGGAAAAG 12038 .......... .......... .......... .......... .......... .......... 186 AAAATGAATA AAAGATGGAA ATTTTGTGAT ACTTTTTTTC CTTAATAATA AAATTAGATA 11978 .......... .......... .......... .......... .......... .......... 186 GAGAAACCTT CCCATGTGCC TAAAAAGAAA ATATTGTTTC CATGAAATTC AAATGAATGA 11918 .......... .......... .......... .......... .......... .......... 186 TGAACTAGCG AAGAGTGTTG AATTATATCG GATAATATAA AGCTACCTCC ACAGGTGTAA 11858 .......... .......... .......... .......... .......... .......... 186 ACCGACTTAT TTGGGTGTCA TCTGTGTTTT CTCCTTATAT TTTAAGCTAC CTAAGCTGCT 11798 .......... .......... .......... .......... .......... .......... 186 GTACTTGATA GTTGTACTAT TAATTTTTCT ACCTCCAACG ACTGTAGTAT CAGTTTTCTG 11738 .......... .......... .......... .......... .......... .......... 186 TTGCAAAATT CTTCTCTTCC CAGATCATTT CAGATCTTTA GCTCAAACAT TTTTCTTTTG 11678 .......... .......... .......... .......... .......... .......... 186 CCTCTCTTTT CTATCATTAA TATATAAAGA AGATGGTTCA ACTAATTTCA CTGCCCTTAC 11618 .......... .......... .......... .......... .......... .......... 186 AAACCTTAAG CTCAAACATT TTCCACTTGC GTCTGCTTTC TACTGTTCAC TGAAGGAAAT 11558 .......... .......... .......... .......... .......... .......... 186 GGTTTCACCA ATTCAGTCTT CTTTCATTTC ACTGCAAGAA TTCTCTTTAA TGTTCTATTC 11498 .......... .......... .......... .......... .......... .......... 186 CATGGGGTTT TCAATCTTAA ATCGATGTTC CATTTCACAG CCAAATATTT GCATCTTATT 11438 .......... .......... .......... .......... .......... .......... 186 TTTATGAGAT GCTATTGGAA CTCTTTTTTT TTCTTCTCCC CAATCCCCTC CCTCCTCCCA 11378 .......... .......... .......... .......... .......... .......... 186 AATAGATGGG AAATGCATCA TGGCTGGTTT GATCAAGGAA ATGAGAGATG AATCGAAAGC 11318 .......... .......... .......... .......... .......... .......... 186 TAAAAAAACT GCACACCGAA AAATTAATTG CATATAAATA AAAAGGATCT TATGAGTAAA 11258 .......... .......... .......... .......... .......... .......... 186 TACTTTTCTT GATGCAGGCT AAGATGGTAT ATACAAAGGC AATTTATGAT TCTGTAAGCC 11198 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCT AAGATGGTAT ATACAAAGGC AATTTATGAT TCTGTAAGCC 229 AGCAGTATAA TGTGCTAAAT TCTGCTATAC ATGGCAAACA AGGACTGGAG GCTTCAATAC 11138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTATAA TGTGCTAAAT TCTGCTATAC ATGGCAAACA AGGACTGGAG GCTTCAATAC 289 CTAGTGTTTC ATTGTCACAA CCATGGCAGT AGCTTCTCTT CCAACTTTAT TTTTCATACC 11078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTGTTTC ATTGTCACAA CCATGGCAGT AGCTTCTCTT CCAACTTTAT TTTTCATACC 349 TTGTTGCTGT AGTCAGGTAT GTACTTCACC AAAAATGATC TGTTGACAAA ATTTAAACTG 11018 |||||||||| |||||| TTGTTGCTGT AGTCAG.... .......... .......... .......... .......... 365 GAACAATTGG CTTCAATCCA TGTATGTCTG ATTCTTGCTT TGTCGGTATA TATTACTAGT 10958 | .......... .......... .......... .......... .......... .........T 366 TTTGCAGATG TTTGTTTGGC AGTTACTATC AAATCACAAG GATTACACTC ACAATCTTTC 10898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAGATG TTTGTTTGGC AGTTACTATC AAATCACAAG GATTACACTC ACAATCTTTC 426 CACATACCAC GCTTGCATGT GGTTAGTCTC TGCGGAAAGT TGATACAAAC AAAGTAATTC 10838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATACCAC GCTTGCATGT GGTTAGTCTC TGCGGAAAGT TGATACAAAC AAAGTAATTC 486 TTGAAGTTAC AGCAAACATA ATCTGAAGGA TTTTTTTTTG GCAGGGTTAG ATGATTCTTT 10778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGTTAC AGCAAACATA ATCTGAAGGA TTTTTTTTTG GCAGGGTTAG ATGATTCTTT 546 TGACACGAAT GTACAGTTGC TTTACATTGT ATTTGTATCA AATGTTAGAT TCAAATTTGT 10718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACACGAAT GTACAGTTGC TTTACATTGT ATTTGTATCA AATGTTAGAT TCAAATTTGT 606 TAGTAATGAT AGCTTTCAAG TACTGTTATG ACTTTCTAAG GTTTAGTGTT AGTAGCTATT 10658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTAATGAT AGCTTTCAAG TACTGTTATG ACTTTCTAAG GTTTAGTGTT AGTAGCTATT 666 CTAGATTGCT GCTCATCTTA CCTTTGAAGT GGTAATCCAA TTTGTTGGGA AATATAATAT 10598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGATTGCT GCTCATCTTA CCTTTGAAGT GGTAATCCAA TTTGTTGGGA AATATAATAT 726 TTGATGCTCT GCTA 10584 |||||||||| |||| TTGATGCTCT GCTA 740 hqPGS_C08HBa0320P23.1-_SGN-E372219- (12757 12683,12607 12497,11240 11062,10958 10584) ******************************************************************************** EST sequence 56 -strand 711 n (File: SGN-E397002-) 1 TATTGTGCCA TGATATTATG CCCCCTCCCG CTCAGGTTGA GAAAAATATC GGAGAGAAAA 61 GAGTTGTATC TTTTCATGGA GCTGGCATAT CTGTGGCACC CAAAATTGAT TTTCATGAGG 121 TTGCTGGTGC TTTGGAGGAC CCTGAGGCTA AGATGGTATA TACAAAGGCA ATTTATGATT 181 CTGTAAGCCA GCAGTATAAT GTGCTAAATT CTGCTATACA TGGCAAACAA GGACTGGAGG 241 CTTCAATACC TAGTGTTTCA TTGTCACAAC CATGGCAGTA GCTTCTCTTC CAACTTTATT 301 TTTCATACCT TGTTGCTGTA GTCAGTTTTG CAGATGTTTG TTTGGCAGTT ACTATCAAAT 361 CACAAGGATT ACACTCACAA TCTTTCCACA TACCACGCTT GCATGTGGTT AGTCTCTGCG 421 GAAAGTTGAT ACAAACAAAG TAATTCTTGA AGTTACAGCA AACATAATCT GAAGGATTTT 481 TTTTTGGCAG GGTTAGATGA TTCTTTTGAC ACGAATGTAC AGTTGCTTTA CATTGTATTT 541 GTATCAAATG TTAGATTCAA ATTTGTTAGT AATGATAGCT TTCAAGTACT GTTATGACTT 601 TTTAAGGTTT AGTGTTAGTA GCTATTCTAG ATTGCTGCTC ATCTTACCTT TGAAGTGGTA 661 ATCCAATTTG TTGGGAAATA TAATATTTGA TGCTCTGCTA AAAAAAAAAA A Predicted gene structure (within gDNA segment 13327 to 9874): Exon 1 12717 12683 ( 35 n); cDNA 1 35 ( 35 n); score: 0.971 Intron 1 12682 12608 ( 75 n); Pd: 0.979 (s: 0), Pa: 0.928 (s: 1.00) Exon 2 12607 12497 ( 111 n); cDNA 36 146 ( 111 n); score: 1.000 Intron 2 12496 11241 (1256 n); Pd: 0.994 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 11240 11062 ( 179 n); cDNA 147 325 ( 179 n); score: 1.000 Intron 3 11061 10959 ( 103 n); Pd: 0.959 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 10958 10584 ( 375 n); cDNA 326 700 ( 375 n); score: 0.997 PPA cDNA 701 711 MATCH C08HBa0320P23.1- SGN-E397002- 0.998 700 0.985 C PGS_C08HBa0320P23.1-_SGN-E397002- (12717 12683,12607 12497,11240 11062,10958 10584) Alignment (genomic DNA sequence = upper lines): TATTGTGCCA TGATATTATG CCCCCTCCCG CCCAGGTTGG TCCTGTGTCA ATTATGTTTG 12658 |||||||||| |||||||||| |||||||||| | ||| TATTGTGCCA TGATATTATG CCCCCTCCCG CTCAG..... .......... .......... 35 TTTCTGTGAT GACTATGTTT TTTTACATAT CCCTGCTTGC GATAGTACAG GTTGAGAAAA 12598 |||||||||| .......... .......... .......... .......... .......... GTTGAGAAAA 45 ATATCGGAGA GAAAAGAGTT GTATCTTTTC ATGGAGCTGG CATATCTGTG GCACCCAAAA 12538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCGGAGA GAAAAGAGTT GTATCTTTTC ATGGAGCTGG CATATCTGTG GCACCCAAAA 105 TTGATTTTCA TGAGGTTGCT GGTGCTTTGG AGGACCCTGA GGTTAGTTTT TATGGGAAGT 12478 |||||||||| |||||||||| |||||||||| |||||||||| | TTGATTTTCA TGAGGTTGCT GGTGCTTTGG AGGACCCTGA G......... .......... 146 CCACTTTGGT TTAATACTTC AAATTATTGG AAGCTTTTCT TAAACTAAAT TTGGCAGCCT 12418 .......... .......... .......... .......... .......... .......... 146 AATGAGAGGT TTAGTGATAT TTGTTGGTGA ACCTTTTGGG GGGGGGGGTC ATTCTATTTA 12358 .......... .......... .......... .......... .......... .......... 146 ATAGAGAATG AAGGAGGAGA AGGGAAGTTG GACCAAACTC TTTCTCTTTC CTATTTGAGA 12298 .......... .......... .......... .......... .......... .......... 146 CCCAAATGAA CAGCTAGTTG ACCTTTGCTA AGAGGGGCGC AGGTTCAGCA GAAATTTTGA 12238 .......... .......... .......... .......... .......... .......... 146 TTCCTGCAGT TGAGCTTTTT CTTGTTGGAA AAGTTAAGAA GTAAAGCTCC AAAGGAACTT 12178 .......... .......... .......... .......... .......... .......... 146 TCAATATGCA AATAAAACAT TCATCTAATA CTGTTTTGTT TATTTATTTT TTGTCAAGTT 12118 .......... .......... .......... .......... .......... .......... 146 AATTCTATAA ACTGAAGAAA AGATATGCAT CTACAAGCTC TCTGAGGATA GTTAAATCTG 12058 .......... .......... .......... .......... .......... .......... 146 TCCCCAAACC ATAGGAAAAG AAAATGAATA AAAGATGGAA ATTTTGTGAT ACTTTTTTTC 11998 .......... .......... .......... .......... .......... .......... 146 CTTAATAATA AAATTAGATA GAGAAACCTT CCCATGTGCC TAAAAAGAAA ATATTGTTTC 11938 .......... .......... .......... .......... .......... .......... 146 CATGAAATTC AAATGAATGA TGAACTAGCG AAGAGTGTTG AATTATATCG GATAATATAA 11878 .......... .......... .......... .......... .......... .......... 146 AGCTACCTCC ACAGGTGTAA ACCGACTTAT TTGGGTGTCA TCTGTGTTTT CTCCTTATAT 11818 .......... .......... .......... .......... .......... .......... 146 TTTAAGCTAC CTAAGCTGCT GTACTTGATA GTTGTACTAT TAATTTTTCT ACCTCCAACG 11758 .......... .......... .......... .......... .......... .......... 146 ACTGTAGTAT CAGTTTTCTG TTGCAAAATT CTTCTCTTCC CAGATCATTT CAGATCTTTA 11698 .......... .......... .......... .......... .......... .......... 146 GCTCAAACAT TTTTCTTTTG CCTCTCTTTT CTATCATTAA TATATAAAGA AGATGGTTCA 11638 .......... .......... .......... .......... .......... .......... 146 ACTAATTTCA CTGCCCTTAC AAACCTTAAG CTCAAACATT TTCCACTTGC GTCTGCTTTC 11578 .......... .......... .......... .......... .......... .......... 146 TACTGTTCAC TGAAGGAAAT GGTTTCACCA ATTCAGTCTT CTTTCATTTC ACTGCAAGAA 11518 .......... .......... .......... .......... .......... .......... 146 TTCTCTTTAA TGTTCTATTC CATGGGGTTT TCAATCTTAA ATCGATGTTC CATTTCACAG 11458 .......... .......... .......... .......... .......... .......... 146 CCAAATATTT GCATCTTATT TTTATGAGAT GCTATTGGAA CTCTTTTTTT TTCTTCTCCC 11398 .......... .......... .......... .......... .......... .......... 146 CAATCCCCTC CCTCCTCCCA AATAGATGGG AAATGCATCA TGGCTGGTTT GATCAAGGAA 11338 .......... .......... .......... .......... .......... .......... 146 ATGAGAGATG AATCGAAAGC TAAAAAAACT GCACACCGAA AAATTAATTG CATATAAATA 11278 .......... .......... .......... .......... .......... .......... 146 AAAAGGATCT TATGAGTAAA TACTTTTCTT GATGCAGGCT AAGATGGTAT ATACAAAGGC 11218 ||| |||||||||| |||||||||| .......... .......... .......... .......GCT AAGATGGTAT ATACAAAGGC 169 AATTTATGAT TCTGTAAGCC AGCAGTATAA TGTGCTAAAT TCTGCTATAC ATGGCAAACA 11158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTATGAT TCTGTAAGCC AGCAGTATAA TGTGCTAAAT TCTGCTATAC ATGGCAAACA 229 AGGACTGGAG GCTTCAATAC CTAGTGTTTC ATTGTCACAA CCATGGCAGT AGCTTCTCTT 11098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACTGGAG GCTTCAATAC CTAGTGTTTC ATTGTCACAA CCATGGCAGT AGCTTCTCTT 289 CCAACTTTAT TTTTCATACC TTGTTGCTGT AGTCAGGTAT GTACTTCACC AAAAATGATC 11038 |||||||||| |||||||||| |||||||||| |||||| CCAACTTTAT TTTTCATACC TTGTTGCTGT AGTCAG.... .......... .......... 325 TGTTGACAAA ATTTAAACTG GAACAATTGG CTTCAATCCA TGTATGTCTG ATTCTTGCTT 10978 .......... .......... .......... .......... .......... .......... 325 TGTCGGTATA TATTACTAGT TTTGCAGATG TTTGTTTGGC AGTTACTATC AAATCACAAG 10918 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T TTTGCAGATG TTTGTTTGGC AGTTACTATC AAATCACAAG 366 GATTACACTC ACAATCTTTC CACATACCAC GCTTGCATGT GGTTAGTCTC TGCGGAAAGT 10858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTACACTC ACAATCTTTC CACATACCAC GCTTGCATGT GGTTAGTCTC TGCGGAAAGT 426 TGATACAAAC AAAGTAATTC TTGAAGTTAC AGCAAACATA ATCTGAAGGA TTTTTTTTTG 10798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATACAAAC AAAGTAATTC TTGAAGTTAC AGCAAACATA ATCTGAAGGA TTTTTTTTTG 486 GCAGGGTTAG ATGATTCTTT TGACACGAAT GTACAGTTGC TTTACATTGT ATTTGTATCA 10738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGGGTTAG ATGATTCTTT TGACACGAAT GTACAGTTGC TTTACATTGT ATTTGTATCA 546 AATGTTAGAT TCAAATTTGT TAGTAATGAT AGCTTTCAAG TACTGTTATG ACTTTCTAAG 10678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AATGTTAGAT TCAAATTTGT TAGTAATGAT AGCTTTCAAG TACTGTTATG ACTTTTTAAG 606 GTTTAGTGTT AGTAGCTATT CTAGATTGCT GCTCATCTTA CCTTTGAAGT GGTAATCCAA 10618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAGTGTT AGTAGCTATT CTAGATTGCT GCTCATCTTA CCTTTGAAGT GGTAATCCAA 666 TTTGTTGGGA AATATAATAT TTGATGCTCT GCTA 10584 |||||||||| |||||||||| |||||||||| |||| TTTGTTGGGA AATATAATAT TTGATGCTCT GCTA 700 hqPGS_C08HBa0320P23.1-_SGN-E397002- (12717 12683,12607 12497,11240 11062,10958 10584) ******************************************************************************** EST sequence 13 -strand 236 n (File: SGN-E389458-) 1 AGTGTTTCAT TGTCACAACC ATGGCAGTAG CTTGTCTTCC AAATTTATTT TTCATACCTT 61 GTTGCTGTAG TCAGTTTTGC AGATGTTTGT TTGGCAGTTA CTATCAAATC ACAAGGATTA 121 CACTCACAAT CTTTCCACAT ACCACGCTTG CATGTGGTTA GTCTCTGCGG AAAGTTGATA 181 CAAACAAAGT AATTCTTGAA GTTTTAGCTT TTATTTTTTT TTTTGTTTTT TTTTAG Predicted gene structure (within gDNA segment 11745 to 9900): Exon 1 11135 11062 ( 74 n); cDNA 1 74 ( 74 n); score: 0.973 Intron 1 11061 10959 ( 103 n); Pd: 0.959 (s: 0.96), Pa: 0.000 (s: 1.00) Exon 2 10958 10799 ( 160 n); cDNA 75 234 ( 160 n); score: 0.906 MATCH C08HBa0320P23.1- SGN-E389458- 0.927 234 0.992 C PGS_C08HBa0320P23.1-_SGN-E389458- (11135 11062,10958 10799) Alignment (genomic DNA sequence = upper lines): AGTGTTTCAT TGTCACAACC ATGGCAGTAG CTTCTCTTCC AACTTTATTT TTCATACCTT 11076 |||||||||| |||||||||| |||||||||| ||| |||||| || ||||||| |||||||||| AGTGTTTCAT TGTCACAACC ATGGCAGTAG CTTGTCTTCC AAATTTATTT TTCATACCTT 60 GTTGCTGTAG TCAGGTATGT ACTTCACCAA AAATGATCTG TTGACAAAAT TTAAACTGGA 11016 |||||||||| |||| GTTGCTGTAG TCAG...... .......... .......... .......... .......... 74 ACAATTGGCT TCAATCCATG TATGTCTGAT TCTTGCTTTG TCGGTATATA TTACTAGTTT 10956 ||| .......... .......... .......... .......... .......... .......TTT 77 TGCAGATGTT TGTTTGGCAG TTACTATCAA ATCACAAGGA TTACACTCAC AATCTTTCCA 10896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGATGTT TGTTTGGCAG TTACTATCAA ATCACAAGGA TTACACTCAC AATCTTTCCA 137 CATACCACGC TTGCATGTGG TTAGTCTCTG CGGAAAGTTG ATACAAACAA AGTAATTCTT 10836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCACGC TTGCATGTGG TTAGTCTCTG CGGAAAGTTG ATACAAACAA AGTAATTCTT 197 GAAGTTACAG CAAACATAAT CTGAAGGATT TTTTTTT 10799 |||||| || | || | | || ||||||| GAAGTTTTAG CTTTTATTTT TTTTTTTGTT TTTTTTT 234 hqPGS_C08HBa0320P23.1-_SGN-E389458- (11135 11062,10958 10799) ******************************************************************************** EST sequence 80 +strand 676 n (File: SGN-E372220+) 1 GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG GAATCTCCTG 61 TGTGTTTATT CGAAAAAACA TATGAATGAT GACCCCGAAC TTGCTGAGAT GAAAAAGAGA 121 GCAAACACAA GAAGCTTGAA GGAGATGGCT TTGCTATTGA GGGGTGGATC AAAAATAATA 181 TGGATTGCTC CTAGTGGTGG AAGAGATAGG CCAGACCCTG TTACAAAAGA ATGGTATCCA 241 GCACCATTTG ATGCTTCCGC GACAGACAAC ATGAGGAGGC TTGTACAACA TGCTGGTGTC 301 CCTGGTCACA TTTATCCTCT AGCAATATTG TGCCATGATA TTATGCCCCC TCCCGCCCAG 361 GTTGAGAAAA ATATCGGAGA GAAAAGAGTT GTATCTTTTC ATGGAGCTGG CATATCTGTG 421 GCACCCAAAA TTGATTTTCA TGAGGTTGCT GGTGCTTTGG AGGACCCTGA GGCTAAGATG 481 GTATATACAA AGGCAATTTA TGATTCTGTA AGCCAGCAGT ATAATGTGCT AAATTCTGCT 541 ATACATGGCA AACAAGGACT GGAGGCTTCA ATACCTAGTG TTTCATTGTC ACAACCATGG 601 CAGTAGCTTC TCTTCCAACT TTATTTTTCA TACCTTGTTG CTGTAGTCAG TTTTGCAGAT 661 GTTTGTTTGG CAGTTA Predicted gene structure (within gDNA segment 15515 to 10192): Exon 1 14915 14866 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 (s: 1.00), Pa: 0.729 (s: 1.00) Exon 2 14787 14677 ( 111 n); cDNA 51 161 ( 111 n); score: 1.000 Intron 2 14676 14048 ( 629 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 14047 13969 ( 79 n); cDNA 162 240 ( 79 n); score: 1.000 Intron 3 13968 12803 (1166 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 12802 12683 ( 120 n); cDNA 241 360 ( 120 n); score: 1.000 Intron 4 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 1.00) Exon 5 12607 12497 ( 111 n); cDNA 361 471 ( 111 n); score: 1.000 Intron 5 12496 11241 (1256 n); Pd: 0.994 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 11240 11062 ( 179 n); cDNA 472 650 ( 179 n); score: 1.000 Intron 6 11061 10959 ( 103 n); Pd: 0.959 (s: 1.00), Pa: 0.000 (s: 0) Exon 7 10958 10933 ( 26 n); cDNA 651 676 ( 26 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E372220+ 1.000 676 1.000 C PGS_C08HBa0320P23.1-_SGN-E372220+ (14915 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10933) Alignment (genomic DNA sequence = upper lines): GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG GTGCACTTAG 14856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG .......... 50 ATAGCATTGT CAGAGTATGT ACAGAAATCA CCATTTACTT AGACATTTGA CAAACTTAAT 14796 .......... .......... .......... .......... .......... .......... 50 ATGTTTAGGA ATCTCCTGTG TGTTTATTCG AAAAAACATA TGAATGATGA CCCCGAACTT 14736 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA ATCTCCTGTG TGTTTATTCG AAAAAACATA TGAATGATGA CCCCGAACTT 102 GCTGAGATGA AAAAGAGAGC AAACACAAGA AGCTTGAAGG AGATGGCTTT GCTATTGAGG 14676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCTGAGATGA AAAAGAGAGC AAACACAAGA AGCTTGAAGG AGATGGCTTT GCTATTGAG. 161 TACTTATTCT GCTATTGCTT TGTCTTTCTT GGAGTATTTT GGTGAAGCTT TTACTTAAGA 14616 .......... .......... .......... .......... .......... .......... 161 AGTTTTGATG TCACACAGTA TTTTATCCTG CGCCAATCTC TCATAAACAT TTTTCTGCCA 14556 .......... .......... .......... .......... .......... .......... 161 AGTGTTACGA AAAAATGAAA GACTCGCTCT TCTAAGCTCT ACATGTATTG AATATGATTA 14496 .......... .......... .......... .......... .......... .......... 161 AATGGAAAGC TAAGCCTAAT GTTGCATGTG TACTCTTAAT CTTCCCTACC TATCAGAAAA 14436 .......... .......... .......... .......... .......... .......... 161 TCTTGTTTGC TCAGGCGTGT AATAGTTCTT TCACGAGGGG GTTAACCCTG CTTGATTATT 14376 .......... .......... .......... .......... .......... .......... 161 CTGCATGGAA GAAAACCATA GAGCAAGTCA CGGTAGAAAT GACTTCTAAC ATGAATGTGC 14316 .......... .......... .......... .......... .......... .......... 161 AGAAGATAAT ACAGATACGA TAGATGGAAG TTTTCTCATG ATCATGGATG TGAAATTCAA 14256 .......... .......... .......... .......... .......... .......... 161 TCATCATCCA TTATATGATT GCTTTATCAG TTTCATACTT CAAGTCCTAG TAAACTGTTG 14196 .......... .......... .......... .......... .......... .......... 161 GTATAGTTAG CACAATAATG GAAGAGGAAA TCAAATGATA CATGTTTCTT TGGCAATTCG 14136 .......... .......... .......... .......... .......... .......... 161 AGATAGCTCA CAAATGCTCT TTTTGATATT CCACTATTGC TCTTTTGATG GAAGCATACA 14076 .......... .......... .......... .......... .......... .......... 161 TCTGAGGATA CATGTACTTG TGATCCAGGG GTGGATCAAA AATAATATGG ATTGCTCCTA 14016 || |||||||||| |||||||||| |||||||||| .......... .......... ........GG GTGGATCAAA AATAATATGG ATTGCTCCTA 193 GTGGTGGAAG AGATAGGCCA GACCCTGTTA CAAAAGAATG GTATCCAGTA AGATTCCTTT 13956 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTGGTGGAAG AGATAGGCCA GACCCTGTTA CAAAAGAATG GTATCCA... .......... 240 TTCTATTTAA TAATTATAGT TGTCTTTCCA TATATTTATC TTTTCATTCT ATTTGATGGA 13896 .......... .......... .......... .......... .......... .......... 240 CATACCTGCA AACATGGCCA ACATACATTT CTCGACAAGG TATTTTCTCC GTTTCATTCA 13836 .......... .......... .......... .......... .......... .......... 240 TATGACTATG TTTGTACAGA GGAGGGGGTT TAATATATTA ATTTGACTCT GTATCTTAAT 13776 .......... .......... .......... .......... .......... .......... 240 AGTGGCAGTA TAGGAAATAT TTTAAATAGT GGTTCAAAAG TTAGTTTTAT GAAGAACACT 13716 .......... .......... .......... .......... .......... .......... 240 GAAACAAATT TGATTTCTTG GAAGTCGTAT AAAACAATAA TCTAAGTGGA GTGGTGAAAA 13656 .......... .......... .......... .......... .......... .......... 240 CATTTTGAGA AGTCCCATAG TTGAAAAGCT ACCATAATTT GAAGGAGGAA GTGTTGCTAC 13596 .......... .......... .......... .......... .......... .......... 240 CTTATTCATT CTTTTAAGTG ATTCTTAATT CCTTTGTGGG CTGATTTGCT ATCCCTGCCT 13536 .......... .......... .......... .......... .......... .......... 240 ATGAAATATA GGGCAAGCCT CATACATCTT CTGAATTACA TCTGATGCCA GTTTACATCT 13476 .......... .......... .......... .......... .......... .......... 240 TAAGATTTTC TTCCACGACT TAACTGTTCT GTTCTTGATT GCTTCCATTT CCTTGGTGAG 13416 .......... .......... .......... .......... .......... .......... 240 GTTGTTCTTG ACTCTTTAAG AGAATAGTCA TCTGCAGCCG TGTGCTGGCA CATTTATGAT 13356 .......... .......... .......... .......... .......... .......... 240 TCAGTTCTCA GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC 13296 .......... .......... .......... .......... .......... .......... 240 GTATCCAATT GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA 13236 .......... .......... .......... .......... .......... .......... 240 TGTTCAGCAA TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT 13176 .......... .......... .......... .......... .......... .......... 240 AAGCGTGATA ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT 13116 .......... .......... .......... .......... .......... .......... 240 TCAAAAGTTT TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA 13056 .......... .......... .......... .......... .......... .......... 240 TTTAATTTTT TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC 12996 .......... .......... .......... .......... .......... .......... 240 AGCTAATTAT TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA 12936 .......... .......... .......... .......... .......... .......... 240 GGCCAAGTAT TATGCATTGG AATGAAATGG GCCTGAATGG ATATAGAGGA ATCATATAAC 12876 .......... .......... .......... .......... .......... .......... 240 AGATTCCAAC TGATCTGTTG ATTAATTGAT TTTGAGCAGC TTGTGGTTGA ACATTTTGCT 12816 .......... .......... .......... .......... .......... .......... 240 TGTATTTCTT CAGGCACCAT TTGATGCTTC CGCGACAGAC AACATGAGGA GGCTTGTACA 12756 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCACCAT TTGATGCTTC CGCGACAGAC AACATGAGGA GGCTTGTACA 287 ACATGCTGGT GTCCCTGGTC ACATTTATCC TCTAGCAATA TTGTGCCATG ATATTATGCC 12696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGCTGGT GTCCCTGGTC ACATTTATCC TCTAGCAATA TTGTGCCATG ATATTATGCC 347 CCCTCCCGCC CAGGTTGGTC CTGTGTCAAT TATGTTTGTT TCTGTGATGA CTATGTTTTT 12636 |||||||||| ||| CCCTCCCGCC CAG....... .......... .......... .......... .......... 360 TTACATATCC CTGCTTGCGA TAGTACAGGT TGAGAAAAAT ATCGGAGAGA AAAGAGTTGT 12576 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT TGAGAAAAAT ATCGGAGAGA AAAGAGTTGT 392 ATCTTTTCAT GGAGCTGGCA TATCTGTGGC ACCCAAAATT GATTTTCATG AGGTTGCTGG 12516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTTCAT GGAGCTGGCA TATCTGTGGC ACCCAAAATT GATTTTCATG AGGTTGCTGG 452 TGCTTTGGAG GACCCTGAGG TTAGTTTTTA TGGGAAGTCC ACTTTGGTTT AATACTTCAA 12456 |||||||||| ||||||||| TGCTTTGGAG GACCCTGAG. .......... .......... .......... .......... 471 ATTATTGGAA GCTTTTCTTA AACTAAATTT GGCAGCCTAA TGAGAGGTTT AGTGATATTT 12396 .......... .......... .......... .......... .......... .......... 471 GTTGGTGAAC CTTTTGGGGG GGGGGGTCAT TCTATTTAAT AGAGAATGAA GGAGGAGAAG 12336 .......... .......... .......... .......... .......... .......... 471 GGAAGTTGGA CCAAACTCTT TCTCTTTCCT ATTTGAGACC CAAATGAACA GCTAGTTGAC 12276 .......... .......... .......... .......... .......... .......... 471 CTTTGCTAAG AGGGGCGCAG GTTCAGCAGA AATTTTGATT CCTGCAGTTG AGCTTTTTCT 12216 .......... .......... .......... .......... .......... .......... 471 TGTTGGAAAA GTTAAGAAGT AAAGCTCCAA AGGAACTTTC AATATGCAAA TAAAACATTC 12156 .......... .......... .......... .......... .......... .......... 471 ATCTAATACT GTTTTGTTTA TTTATTTTTT GTCAAGTTAA TTCTATAAAC TGAAGAAAAG 12096 .......... .......... .......... .......... .......... .......... 471 ATATGCATCT ACAAGCTCTC TGAGGATAGT TAAATCTGTC CCCAAACCAT AGGAAAAGAA 12036 .......... .......... .......... .......... .......... .......... 471 AATGAATAAA AGATGGAAAT TTTGTGATAC TTTTTTTCCT TAATAATAAA ATTAGATAGA 11976 .......... .......... .......... .......... .......... .......... 471 GAAACCTTCC CATGTGCCTA AAAAGAAAAT ATTGTTTCCA TGAAATTCAA ATGAATGATG 11916 .......... .......... .......... .......... .......... .......... 471 AACTAGCGAA GAGTGTTGAA TTATATCGGA TAATATAAAG CTACCTCCAC AGGTGTAAAC 11856 .......... .......... .......... .......... .......... .......... 471 CGACTTATTT GGGTGTCATC TGTGTTTTCT CCTTATATTT TAAGCTACCT AAGCTGCTGT 11796 .......... .......... .......... .......... .......... .......... 471 ACTTGATAGT TGTACTATTA ATTTTTCTAC CTCCAACGAC TGTAGTATCA GTTTTCTGTT 11736 .......... .......... .......... .......... .......... .......... 471 GCAAAATTCT TCTCTTCCCA GATCATTTCA GATCTTTAGC TCAAACATTT TTCTTTTGCC 11676 .......... .......... .......... .......... .......... .......... 471 TCTCTTTTCT ATCATTAATA TATAAAGAAG ATGGTTCAAC TAATTTCACT GCCCTTACAA 11616 .......... .......... .......... .......... .......... .......... 471 ACCTTAAGCT CAAACATTTT CCACTTGCGT CTGCTTTCTA CTGTTCACTG AAGGAAATGG 11556 .......... .......... .......... .......... .......... .......... 471 TTTCACCAAT TCAGTCTTCT TTCATTTCAC TGCAAGAATT CTCTTTAATG TTCTATTCCA 11496 .......... .......... .......... .......... .......... .......... 471 TGGGGTTTTC AATCTTAAAT CGATGTTCCA TTTCACAGCC AAATATTTGC ATCTTATTTT 11436 .......... .......... .......... .......... .......... .......... 471 TATGAGATGC TATTGGAACT CTTTTTTTTT CTTCTCCCCA ATCCCCTCCC TCCTCCCAAA 11376 .......... .......... .......... .......... .......... .......... 471 TAGATGGGAA ATGCATCATG GCTGGTTTGA TCAAGGAAAT GAGAGATGAA TCGAAAGCTA 11316 .......... .......... .......... .......... .......... .......... 471 AAAAAACTGC ACACCGAAAA ATTAATTGCA TATAAATAAA AAGGATCTTA TGAGTAAATA 11256 .......... .......... .......... .......... .......... .......... 471 CTTTTCTTGA TGCAGGCTAA GATGGTATAT ACAAAGGCAA TTTATGATTC TGTAAGCCAG 11196 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCTAA GATGGTATAT ACAAAGGCAA TTTATGATTC TGTAAGCCAG 516 CAGTATAATG TGCTAAATTC TGCTATACAT GGCAAACAAG GACTGGAGGC TTCAATACCT 11136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTATAATG TGCTAAATTC TGCTATACAT GGCAAACAAG GACTGGAGGC TTCAATACCT 576 AGTGTTTCAT TGTCACAACC ATGGCAGTAG CTTCTCTTCC AACTTTATTT TTCATACCTT 11076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTTCAT TGTCACAACC ATGGCAGTAG CTTCTCTTCC AACTTTATTT TTCATACCTT 636 GTTGCTGTAG TCAGGTATGT ACTTCACCAA AAATGATCTG TTGACAAAAT TTAAACTGGA 11016 |||||||||| |||| GTTGCTGTAG TCAG...... .......... .......... .......... .......... 650 ACAATTGGCT TCAATCCATG TATGTCTGAT TCTTGCTTTG TCGGTATATA TTACTAGTTT 10956 ||| .......... .......... .......... .......... .......... .......TTT 653 TGCAGATGTT TGTTTGGCAG TTA 10933 |||||||||| |||||||||| ||| TGCAGATGTT TGTTTGGCAG TTA 676 hqPGS_C08HBa0320P23.1-_SGN-E372220+ (14915 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10933) ******************************************************************************** EST sequence 60 -strand 803 n (File: SGN-E546511-) 1 GCAAGCCATT CAGCATGGGA AGGAACTCCT GTGTGTTTAT TCGAAAAAAC ATATGAATGA 61 TGCCCCCGAA CTTGCTGAGA TGAAAAAGAG AGCAAACACA AGAAGCTTGA AGGAGATGGC 121 TTTGCTATTG AGGGGTGGAT CAAAAATAAT ATGGATTGCT CCTAGTGGTG GAAGAGATAG 181 GCCAGACCCT GTTACAAAAG AATGGTATCC AGCACCATTT GATGCTTCCG CGACAGACAA 241 CATGAGGAGG CTTGTACAAC ATGCTGGTGT CCCTGGTCAC ATTTATCCTC TAGCAATATT 301 GTGCCATGAT ATTATGCCCC CTCCCGCCCA GGTTGAGAAA AATATTGGAG AGAAAAGAGT 361 TGTATCTTTT CATGGAGCTG GCATATCTGT GGCACCCAAA ATTGATTTTC ATGAGGTTGC 421 TGGTGCTTTG GAGGACCCTG AGGTTAGTTT TTATGGGAAG TCCACTTTGG TTTAATACTT 481 TAAATTATTG GAAGCTTTTT TAAAACTAAA TTTGGCAGCC TAATGAGAGG TTTAGTGATA 541 TTAGTTGGTG AACCTTGGGA AAGGGGGGGG GGGGGTTAAT TCTATTTAAT AGAGAATGAA 601 GGAGGAGAAG GGAAGTTGGA CCAAACTCTT TCTCTTTCCT ATTTGAGACC CAAATGAACA 661 GCTAGTTGAC CTTTGCTAAG AGGGGCGAAG GTTCAGCAGA AATTTTGATT CCTTCAGTTG 721 AGCTTTCTCT TGTTGGAAAA GTTAAGTAAA GCTCCAAAGG AACTTTCAAT ATGCAAATAA 781 AACATTCATC TAAAAAAAAA AAA Predicted gene structure (within gDNA segment 15643 to 11450): Exon 1 14887 14866 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 (s: 0), Pa: 0.729 (s: 0.96) Exon 2 14787 14677 ( 111 n); cDNA 23 132 ( 110 n); score: 0.982 Intron 2 14676 14048 ( 629 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 14047 13969 ( 79 n); cDNA 133 211 ( 79 n); score: 1.000 Intron 3 13968 12803 (1166 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 12802 12683 ( 120 n); cDNA 212 331 ( 120 n); score: 1.000 Intron 4 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 0.98) Exon 5 12607 12151 ( 457 n); cDNA 332 792 ( 461 n); score: 0.931 PPA cDNA 793 803 MATCH C08HBa0320P23.1- SGN-E546511- 0.956 789 0.983 C PGS_C08HBa0320P23.1-_SGN-E546511- (14887 14866,14787 14677,14047 13969,12802 12683,12607 12151) Alignment (genomic DNA sequence = upper lines): GCAAGCCATT CAGCATGGGA AGGTGCACTT AGATAGCATT GTCAGAGTAT GTACAGAAAT 14828 |||||||||| |||||||||| || GCAAGCCATT CAGCATGGGA AG........ .......... .......... .......... 22 CACCATTTAC TTAGACATTT GACAAACTTA ATATGTTTAG GAATCTCCTG TGTGTTTATT 14768 ||| |||||| |||||||||| .......... .......... .......... .......... GAA-CTCCTG TGTGTTTATT 41 CGAAAAAACA TATGAATGAT GACCCCGAAC TTGCTGAGAT GAAAAAGAGA GCAAACACAA 14708 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CGAAAAAACA TATGAATGAT GCCCCCGAAC TTGCTGAGAT GAAAAAGAGA GCAAACACAA 101 GAAGCTTGAA GGAGATGGCT TTGCTATTGA GGTACTTATT CTGCTATTGC TTTGTCTTTC 14648 |||||||||| |||||||||| |||||||||| | GAAGCTTGAA GGAGATGGCT TTGCTATTGA G......... .......... .......... 132 TTGGAGTATT TTGGTGAAGC TTTTACTTAA GAAGTTTTGA TGTCACACAG TATTTTATCC 14588 .......... .......... .......... .......... .......... .......... 132 TGCGCCAATC TCTCATAAAC ATTTTTCTGC CAAGTGTTAC GAAAAAATGA AAGACTCGCT 14528 .......... .......... .......... .......... .......... .......... 132 CTTCTAAGCT CTACATGTAT TGAATATGAT TAAATGGAAA GCTAAGCCTA ATGTTGCATG 14468 .......... .......... .......... .......... .......... .......... 132 TGTACTCTTA ATCTTCCCTA CCTATCAGAA AATCTTGTTT GCTCAGGCGT GTAATAGTTC 14408 .......... .......... .......... .......... .......... .......... 132 TTTCACGAGG GGGTTAACCC TGCTTGATTA TTCTGCATGG AAGAAAACCA TAGAGCAAGT 14348 .......... .......... .......... .......... .......... .......... 132 CACGGTAGAA ATGACTTCTA ACATGAATGT GCAGAAGATA ATACAGATAC GATAGATGGA 14288 .......... .......... .......... .......... .......... .......... 132 AGTTTTCTCA TGATCATGGA TGTGAAATTC AATCATCATC CATTATATGA TTGCTTTATC 14228 .......... .......... .......... .......... .......... .......... 132 AGTTTCATAC TTCAAGTCCT AGTAAACTGT TGGTATAGTT AGCACAATAA TGGAAGAGGA 14168 .......... .......... .......... .......... .......... .......... 132 AATCAAATGA TACATGTTTC TTTGGCAATT CGAGATAGCT CACAAATGCT CTTTTTGATA 14108 .......... .......... .......... .......... .......... .......... 132 TTCCACTATT GCTCTTTTGA TGGAAGCATA CATCTGAGGA TACATGTACT TGTGATCCAG 14048 .......... .......... .......... .......... .......... .......... 132 GGGTGGATCA AAAATAATAT GGATTGCTCC TAGTGGTGGA AGAGATAGGC CAGACCCTGT 13988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGATCA AAAATAATAT GGATTGCTCC TAGTGGTGGA AGAGATAGGC CAGACCCTGT 192 TACAAAAGAA TGGTATCCAG TAAGATTCCT TTTTCTATTT AATAATTATA GTTGTCTTTC 13928 |||||||||| ||||||||| TACAAAAGAA TGGTATCCA. .......... .......... .......... .......... 211 CATATATTTA TCTTTTCATT CTATTTGATG GACATACCTG CAAACATGGC CAACATACAT 13868 .......... .......... .......... .......... .......... .......... 211 TTCTCGACAA GGTATTTTCT CCGTTTCATT CATATGACTA TGTTTGTACA GAGGAGGGGG 13808 .......... .......... .......... .......... .......... .......... 211 TTTAATATAT TAATTTGACT CTGTATCTTA ATAGTGGCAG TATAGGAAAT ATTTTAAATA 13748 .......... .......... .......... .......... .......... .......... 211 GTGGTTCAAA AGTTAGTTTT ATGAAGAACA CTGAAACAAA TTTGATTTCT TGGAAGTCGT 13688 .......... .......... .......... .......... .......... .......... 211 ATAAAACAAT AATCTAAGTG GAGTGGTGAA AACATTTTGA GAAGTCCCAT AGTTGAAAAG 13628 .......... .......... .......... .......... .......... .......... 211 CTACCATAAT TTGAAGGAGG AAGTGTTGCT ACCTTATTCA TTCTTTTAAG TGATTCTTAA 13568 .......... .......... .......... .......... .......... .......... 211 TTCCTTTGTG GGCTGATTTG CTATCCCTGC CTATGAAATA TAGGGCAAGC CTCATACATC 13508 .......... .......... .......... .......... .......... .......... 211 TTCTGAATTA CATCTGATGC CAGTTTACAT CTTAAGATTT TCTTCCACGA CTTAACTGTT 13448 .......... .......... .......... .......... .......... .......... 211 CTGTTCTTGA TTGCTTCCAT TTCCTTGGTG AGGTTGTTCT TGACTCTTTA AGAGAATAGT 13388 .......... .......... .......... .......... .......... .......... 211 CATCTGCAGC CGTGTGCTGG CACATTTATG ATTCAGTTCT CAGAATGTGA TTGGCATTAT 13328 .......... .......... .......... .......... .......... .......... 211 TTGCCTGAAC TTTAAATGAG AGTTAACTGT TCGTATCCAA TTGGGATTTA CATGGATACA 13268 .......... .......... .......... .......... .......... .......... 211 TGCTATGGTT CACTGCTTCT TCCTATTCTG TATGTTCAGC AATACACTTC TCCATTACAC 13208 .......... .......... .......... .......... .......... .......... 211 TTGCCTTGTG ACAGTTCTAG GGTGATGTTG ATAAGCGTGA TAATATCTCT TCTTCTCCAG 13148 .......... .......... .......... .......... .......... .......... 211 CATAGTTCTA TGTATATGAT GGGCAGTTAG TTTCAAAAGT TTTGGTATTT ATGCTTCGTC 13088 .......... .......... .......... .......... .......... .......... 211 ATGATGCTTA ATTAAGAGCC ATTTTTTTAA CATTTAATTT TTTTTTCCAA AAGAGCCAGA 13028 .......... .......... .......... .......... .......... .......... 211 TCCATATAGG TAATATCAGT TAGTTAAGAC GCAGCTAATT ATTTTTCAAT GAACAGGTGT 12968 .......... .......... .......... .......... .......... .......... 211 TTGGTTTAGA TAAACCATAA TTGCCTTTAA AAGGCCAAGT ATTATGCATT GGAATGAAAT 12908 .......... .......... .......... .......... .......... .......... 211 GGGCCTGAAT GGATATAGAG GAATCATATA ACAGATTCCA ACTGATCTGT TGATTAATTG 12848 .......... .......... .......... .......... .......... .......... 211 ATTTTGAGCA GCTTGTGGTT GAACATTTTG CTTGTATTTC TTCAGGCACC ATTTGATGCT 12788 ||||| |||||||||| .......... .......... .......... .......... .....GCACC ATTTGATGCT 226 TCCGCGACAG ACAACATGAG GAGGCTTGTA CAACATGCTG GTGTCCCTGG TCACATTTAT 12728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCGACAG ACAACATGAG GAGGCTTGTA CAACATGCTG GTGTCCCTGG TCACATTTAT 286 CCTCTAGCAA TATTGTGCCA TGATATTATG CCCCCTCCCG CCCAGGTTGG TCCTGTGTCA 12668 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CCTCTAGCAA TATTGTGCCA TGATATTATG CCCCCTCCCG CCCAG..... .......... 331 ATTATGTTTG TTTCTGTGAT GACTATGTTT TTTTACATAT CCCTGCTTGC GATAGTACAG 12608 .......... .......... .......... .......... .......... .......... 331 GTTGAGAAAA ATATCGGAGA GAAAAGAGTT GTATCTTTTC ATGGAGCTGG CATATCTGTG 12548 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAGAAAA ATATTGGAGA GAAAAGAGTT GTATCTTTTC ATGGAGCTGG CATATCTGTG 391 GCACCCAAAA TTGATTTTCA TGAGGTTGCT GGTGCTTTGG AGGACCCTGA GGTTAGTTTT 12488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCCAAAA TTGATTTTCA TGAGGTTGCT GGTGCTTTGG AGGACCCTGA GGTTAGTTTT 451 TATGGGAAGT CCACTTTGGT TTAATACTTC AAATTATTGG AAGCTTTTCT TAAACTAAAT 12428 |||||||||| |||||||||| ||||||||| |||||||||| |||||||| | ||||||||| TATGGGAAGT CCACTTTGGT TTAATACTTT AAATTATTGG AAGCTTTTTT AAAACTAAAT 511 TTGGCAGCCT AATGAGAGGT TTAGTGATAT TTGTTGGTGA ACCTT----- -TTGGGGGGG 12374 |||||||||| |||||||||| |||||||||| | |||||||| ||||| ||||||| TTGGCAGCCT AATGAGAGGT TTAGTGATAT TAGTTGGTGA ACCTTGGGAA AGGGGGGGGG 571 GGGG-TCATT CTATTTAATA GAGAATGAAG GAGGAGAAGG GAAGTTGGAC CAAACTCTTT 12315 |||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTAATT CTATTTAATA GAGAATGAAG GAGGAGAAGG GAAGTTGGAC CAAACTCTTT 631 CTCTTTCCTA TTTGAGACCC AAATGAACAG CTAGTTGACC TTTGCTAAGA GGGGCGCAGG 12255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CTCTTTCCTA TTTGAGACCC AAATGAACAG CTAGTTGACC TTTGCTAAGA GGGGCGAAGG 691 TTCAGCAGAA ATTTTGATTC CTGCAGTTGA GCTTTTTCTT GTTGGAAAAG TTAAGAAGTA 12195 |||||||||| |||||||||| || ||||||| ||||| |||| |||||||||| || ||||| TTCAGCAGAA ATTTTGATTC CTTCAGTTGA GCTTTCTCTT GTTGGAAAAG TT---AAGTA 748 AAGCTCCAAA GGAACTTTCA ATATGCAAAT AAAACATTCA TCTA 12151 |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGCTCCAAA GGAACTTTCA ATATGCAAAT AAAACATTCA TCTA 792 hqPGS_C08HBa0320P23.1-_SGN-E546511- (14887 14866,14787 14677,14047 13969,12802 12683,12607 12151) ******************************************************************************** EST sequence 68 +strand 386 n (File: SGN-E283056+) 1 GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG GAATCTCCTG 61 TGTGTTTATT CGAAAAAACA TATGAATGAT GACCCCGAAC TTGCTGAGAT GAAAAAGAGA 121 GCAAACACAA GAAGCTTGAA GGAGATGGCT TTGCTATTGA GGGGTGGATC AAAAATAATA 181 TGGATTGCTC CTAGTGGTGG AAGAGATAGG CCAGACCCTG TTACAAAAGA ATGGTATCCA 241 GCACCATTTG ATGCTTCCGC GACAGACAAC ATGAGGAGGC TTGTACAACA TGCTGGTGTC 301 CCTGGTCACA TTTATCCTCT AGCAATATTG TGCCATGATA TTATGCCCCC TCCCGCCCAG 361 GTTGAGAAAA ATATCGGAGA GAAAAG Predicted gene structure (within gDNA segment 15515 to 11849): Exon 1 14915 14866 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 (s: 1.00), Pa: 0.729 (s: 1.00) Exon 2 14787 14677 ( 111 n); cDNA 51 161 ( 111 n); score: 1.000 Intron 2 14676 14048 ( 629 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 14047 13969 ( 79 n); cDNA 162 240 ( 79 n); score: 1.000 Intron 3 13968 12803 (1166 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 12802 12683 ( 120 n); cDNA 241 360 ( 120 n); score: 1.000 Intron 4 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 0) Exon 5 12607 12582 ( 26 n); cDNA 361 386 ( 26 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E283056+ 1.000 386 1.000 C PGS_C08HBa0320P23.1-_SGN-E283056+ (14915 14866,14787 14677,14047 13969,12802 12683,12607 12582) Alignment (genomic DNA sequence = upper lines): GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG GTGCACTTAG 14856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATAGAG TTATTACTGA TCCTCTTTGC AAGCCATTCA GCATGGGAAG .......... 50 ATAGCATTGT CAGAGTATGT ACAGAAATCA CCATTTACTT AGACATTTGA CAAACTTAAT 14796 .......... .......... .......... .......... .......... .......... 50 ATGTTTAGGA ATCTCCTGTG TGTTTATTCG AAAAAACATA TGAATGATGA CCCCGAACTT 14736 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA ATCTCCTGTG TGTTTATTCG AAAAAACATA TGAATGATGA CCCCGAACTT 102 GCTGAGATGA AAAAGAGAGC AAACACAAGA AGCTTGAAGG AGATGGCTTT GCTATTGAGG 14676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCTGAGATGA AAAAGAGAGC AAACACAAGA AGCTTGAAGG AGATGGCTTT GCTATTGAG. 161 TACTTATTCT GCTATTGCTT TGTCTTTCTT GGAGTATTTT GGTGAAGCTT TTACTTAAGA 14616 .......... .......... .......... .......... .......... .......... 161 AGTTTTGATG TCACACAGTA TTTTATCCTG CGCCAATCTC TCATAAACAT TTTTCTGCCA 14556 .......... .......... .......... .......... .......... .......... 161 AGTGTTACGA AAAAATGAAA GACTCGCTCT TCTAAGCTCT ACATGTATTG AATATGATTA 14496 .......... .......... .......... .......... .......... .......... 161 AATGGAAAGC TAAGCCTAAT GTTGCATGTG TACTCTTAAT CTTCCCTACC TATCAGAAAA 14436 .......... .......... .......... .......... .......... .......... 161 TCTTGTTTGC TCAGGCGTGT AATAGTTCTT TCACGAGGGG GTTAACCCTG CTTGATTATT 14376 .......... .......... .......... .......... .......... .......... 161 CTGCATGGAA GAAAACCATA GAGCAAGTCA CGGTAGAAAT GACTTCTAAC ATGAATGTGC 14316 .......... .......... .......... .......... .......... .......... 161 AGAAGATAAT ACAGATACGA TAGATGGAAG TTTTCTCATG ATCATGGATG TGAAATTCAA 14256 .......... .......... .......... .......... .......... .......... 161 TCATCATCCA TTATATGATT GCTTTATCAG TTTCATACTT CAAGTCCTAG TAAACTGTTG 14196 .......... .......... .......... .......... .......... .......... 161 GTATAGTTAG CACAATAATG GAAGAGGAAA TCAAATGATA CATGTTTCTT TGGCAATTCG 14136 .......... .......... .......... .......... .......... .......... 161 AGATAGCTCA CAAATGCTCT TTTTGATATT CCACTATTGC TCTTTTGATG GAAGCATACA 14076 .......... .......... .......... .......... .......... .......... 161 TCTGAGGATA CATGTACTTG TGATCCAGGG GTGGATCAAA AATAATATGG ATTGCTCCTA 14016 || |||||||||| |||||||||| |||||||||| .......... .......... ........GG GTGGATCAAA AATAATATGG ATTGCTCCTA 193 GTGGTGGAAG AGATAGGCCA GACCCTGTTA CAAAAGAATG GTATCCAGTA AGATTCCTTT 13956 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTGGTGGAAG AGATAGGCCA GACCCTGTTA CAAAAGAATG GTATCCA... .......... 240 TTCTATTTAA TAATTATAGT TGTCTTTCCA TATATTTATC TTTTCATTCT ATTTGATGGA 13896 .......... .......... .......... .......... .......... .......... 240 CATACCTGCA AACATGGCCA ACATACATTT CTCGACAAGG TATTTTCTCC GTTTCATTCA 13836 .......... .......... .......... .......... .......... .......... 240 TATGACTATG TTTGTACAGA GGAGGGGGTT TAATATATTA ATTTGACTCT GTATCTTAAT 13776 .......... .......... .......... .......... .......... .......... 240 AGTGGCAGTA TAGGAAATAT TTTAAATAGT GGTTCAAAAG TTAGTTTTAT GAAGAACACT 13716 .......... .......... .......... .......... .......... .......... 240 GAAACAAATT TGATTTCTTG GAAGTCGTAT AAAACAATAA TCTAAGTGGA GTGGTGAAAA 13656 .......... .......... .......... .......... .......... .......... 240 CATTTTGAGA AGTCCCATAG TTGAAAAGCT ACCATAATTT GAAGGAGGAA GTGTTGCTAC 13596 .......... .......... .......... .......... .......... .......... 240 CTTATTCATT CTTTTAAGTG ATTCTTAATT CCTTTGTGGG CTGATTTGCT ATCCCTGCCT 13536 .......... .......... .......... .......... .......... .......... 240 ATGAAATATA GGGCAAGCCT CATACATCTT CTGAATTACA TCTGATGCCA GTTTACATCT 13476 .......... .......... .......... .......... .......... .......... 240 TAAGATTTTC TTCCACGACT TAACTGTTCT GTTCTTGATT GCTTCCATTT CCTTGGTGAG 13416 .......... .......... .......... .......... .......... .......... 240 GTTGTTCTTG ACTCTTTAAG AGAATAGTCA TCTGCAGCCG TGTGCTGGCA CATTTATGAT 13356 .......... .......... .......... .......... .......... .......... 240 TCAGTTCTCA GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC 13296 .......... .......... .......... .......... .......... .......... 240 GTATCCAATT GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA 13236 .......... .......... .......... .......... .......... .......... 240 TGTTCAGCAA TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT 13176 .......... .......... .......... .......... .......... .......... 240 AAGCGTGATA ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT 13116 .......... .......... .......... .......... .......... .......... 240 TCAAAAGTTT TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA 13056 .......... .......... .......... .......... .......... .......... 240 TTTAATTTTT TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC 12996 .......... .......... .......... .......... .......... .......... 240 AGCTAATTAT TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA 12936 .......... .......... .......... .......... .......... .......... 240 GGCCAAGTAT TATGCATTGG AATGAAATGG GCCTGAATGG ATATAGAGGA ATCATATAAC 12876 .......... .......... .......... .......... .......... .......... 240 AGATTCCAAC TGATCTGTTG ATTAATTGAT TTTGAGCAGC TTGTGGTTGA ACATTTTGCT 12816 .......... .......... .......... .......... .......... .......... 240 TGTATTTCTT CAGGCACCAT TTGATGCTTC CGCGACAGAC AACATGAGGA GGCTTGTACA 12756 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCACCAT TTGATGCTTC CGCGACAGAC AACATGAGGA GGCTTGTACA 287 ACATGCTGGT GTCCCTGGTC ACATTTATCC TCTAGCAATA TTGTGCCATG ATATTATGCC 12696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGCTGGT GTCCCTGGTC ACATTTATCC TCTAGCAATA TTGTGCCATG ATATTATGCC 347 CCCTCCCGCC CAGGTTGGTC CTGTGTCAAT TATGTTTGTT TCTGTGATGA CTATGTTTTT 12636 |||||||||| ||| CCCTCCCGCC CAG....... .......... .......... .......... .......... 360 TTACATATCC CTGCTTGCGA TAGTACAGGT TGAGAAAAAT ATCGGAGAGA AAAG 12582 || |||||||||| |||||||||| |||| .......... .......... ........GT TGAGAAAAAT ATCGGAGAGA AAAG 386 hqPGS_C08HBa0320P23.1-_SGN-E283056+ (14915 14866,14787 14677,14047 13969,12802 12683,12607 12582) ******************************************************************************** EST sequence 99 +strand 415 n (File: SGN-E232945+) 1 GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 61 GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 121 TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 181 ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 241 TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 301 TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 361 TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA Predicted gene structure (within gDNA segment 13945 to 12321): Exon 1 13345 12931 ( 415 n); cDNA 1 415 ( 415 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E232945+ 1.000 415 1.000 C PGS_C08HBa0320P23.1-_SGN-E232945+ (13345 12931) Alignment (genomic DNA sequence = upper lines): GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 13286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 60 GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 13226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 120 TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 13166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 180 ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 13106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 240 TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 13046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 300 TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 12986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 360 TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA 12931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA 415 hqPGS_C08HBa0320P23.1-_SGN-E232945+ (13345 12931) ******************************************************************************** EST sequence 82 +strand 220 n (File: SGN-E389722+) 1 TGATTGGCAT TATTTGCCTG AACTTTAAAT GAGAGTTAAC TGTTCGTATC CAATTGGGAT 61 TTACATGGAT ACATGCTATG GTTCACTGCT TCTTCCTATT CTGTATGTTC AGCAATACAC 121 TTCTCCATTA CACTTGCCTT GTGACAGTTC TAGGGTGATG TTGATAAGCG TGATAATATC 181 TCTTCTTCTC CAGCATAGTT CTATGTATAT GATGGGCAGT Predicted gene structure (within gDNA segment 13940 to 12511): Exon 1 13340 13123 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E389722+ 1.000 218 0.991 C PGS_C08HBa0320P23.1-_SGN-E389722+ (13340 13123) Alignment (genomic DNA sequence = upper lines): TGATTGGCAT TATTTGCCTG AACTTTAAAT GAGAGTTAAC TGTTCGTATC CAATTGGGAT 13281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGGCAT TATTTGCCTG AACTTTAAAT GAGAGTTAAC TGTTCGTATC CAATTGGGAT 60 TTACATGGAT ACATGCTATG GTTCACTGCT TCTTCCTATT CTGTATGTTC AGCAATACAC 13221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACATGGAT ACATGCTATG GTTCACTGCT TCTTCCTATT CTGTATGTTC AGCAATACAC 120 TTCTCCATTA CACTTGCCTT GTGACAGTTC TAGGGTGATG TTGATAAGCG TGATAATATC 13161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCATTA CACTTGCCTT GTGACAGTTC TAGGGTGATG TTGATAAGCG TGATAATATC 180 TCTTCTTCTC CAGCATAGTT CTATGTATAT GATGGGCA 13123 |||||||||| |||||||||| |||||||||| |||||||| TCTTCTTCTC CAGCATAGTT CTATGTATAT GATGGGCA 218 hqPGS_C08HBa0320P23.1-_SGN-E389722+ (13340 13123) ******************************************************************************** EST sequence 141 +strand 188 n (File: SGN-E397003+) 1 TGGAGATAGA GTTATTACTG ATCCTCTTTG CAAGCCATTC AGCATGGGAA GGAATCTCCT 61 GTGTGTTTAT TCGAAAAAAC ATATGAATGA TGACCCCGAA CTTGCTGAGA TGAAAAAGAG 121 AGCAAACACA AGAAGCTTGA AAGAGATGGC TTTGCTATTG AAGGGTGGAT CAAAAATAAT 181 ATGGATTG Predicted gene structure (within gDNA segment 15516 to 13798): Exon 1 14916 14866 ( 51 n); cDNA 1 51 ( 51 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 (s: 1.00), Pa: 0.729 (s: 1.00) Exon 2 14787 14677 ( 111 n); cDNA 52 162 ( 111 n); score: 0.982 Intron 2 14676 14048 ( 629 n); Pd: 1.000 (s: 0.96), Pa: 0.987 (s: 0) Exon 3 14047 14022 ( 26 n); cDNA 163 188 ( 26 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E397003+ 0.988 188 1.000 C PGS_C08HBa0320P23.1-_SGN-E397003+ (14916 14866,14787 14677,14047 14022) Alignment (genomic DNA sequence = upper lines): TGGAGATAGA GTTATTACTG ATCCTCTTTG CAAGCCATTC AGCATGGGAA GGTGCACTTA 14857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGGAGATAGA GTTATTACTG ATCCTCTTTG CAAGCCATTC AGCATGGGAA G......... 51 GATAGCATTG TCAGAGTATG TACAGAAATC ACCATTTACT TAGACATTTG ACAAACTTAA 14797 .......... .......... .......... .......... .......... .......... 51 TATGTTTAGG AATCTCCTGT GTGTTTATTC GAAAAAACAT ATGAATGATG ACCCCGAACT 14737 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AATCTCCTGT GTGTTTATTC GAAAAAACAT ATGAATGATG ACCCCGAACT 102 TGCTGAGATG AAAAAGAGAG CAAACACAAG AAGCTTGAAG GAGATGGCTT TGCTATTGAG 14677 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| TGCTGAGATG AAAAAGAGAG CAAACACAAG AAGCTTGAAA GAGATGGCTT TGCTATTGAA 162 GTACTTATTC TGCTATTGCT TTGTCTTTCT TGGAGTATTT TGGTGAAGCT TTTACTTAAG 14617 .......... .......... .......... .......... .......... .......... 162 AAGTTTTGAT GTCACACAGT ATTTTATCCT GCGCCAATCT CTCATAAACA TTTTTCTGCC 14557 .......... .......... .......... .......... .......... .......... 162 AAGTGTTACG AAAAAATGAA AGACTCGCTC TTCTAAGCTC TACATGTATT GAATATGATT 14497 .......... .......... .......... .......... .......... .......... 162 AAATGGAAAG CTAAGCCTAA TGTTGCATGT GTACTCTTAA TCTTCCCTAC CTATCAGAAA 14437 .......... .......... .......... .......... .......... .......... 162 ATCTTGTTTG CTCAGGCGTG TAATAGTTCT TTCACGAGGG GGTTAACCCT GCTTGATTAT 14377 .......... .......... .......... .......... .......... .......... 162 TCTGCATGGA AGAAAACCAT AGAGCAAGTC ACGGTAGAAA TGACTTCTAA CATGAATGTG 14317 .......... .......... .......... .......... .......... .......... 162 CAGAAGATAA TACAGATACG ATAGATGGAA GTTTTCTCAT GATCATGGAT GTGAAATTCA 14257 .......... .......... .......... .......... .......... .......... 162 ATCATCATCC ATTATATGAT TGCTTTATCA GTTTCATACT TCAAGTCCTA GTAAACTGTT 14197 .......... .......... .......... .......... .......... .......... 162 GGTATAGTTA GCACAATAAT GGAAGAGGAA ATCAAATGAT ACATGTTTCT TTGGCAATTC 14137 .......... .......... .......... .......... .......... .......... 162 GAGATAGCTC ACAAATGCTC TTTTTGATAT TCCACTATTG CTCTTTTGAT GGAAGCATAC 14077 .......... .......... .......... .......... .......... .......... 162 ATCTGAGGAT ACATGTACTT GTGATCCAGG GGTGGATCAA AAATAATATG GATTG 14022 | |||||||||| |||||||||| ||||| .......... .......... .........G GGTGGATCAA AAATAATATG GATTG 188 hqPGS_C08HBa0320P23.1-_SGN-E397003+ (14916 14866,14787 14677,14047 14022) ******************************************************************************** EST sequence 151 +strand 594 n (File: SGN-E318668+) 1 ATCTTCATTT TCAACTTGTG TACCACTAGT AGTAACAACT GTTTCTTCTG CAGCAACTTC 61 GACGCTATTC CCGATTTCCT GTTTCGGTGT GAAATCGAGG ACGGTTGGGA TTCGGAAGCT 121 ACTGTGTGCC GTTTTTTGTG CTTCGAAGGT ACGTGGAATG GCAGAAATGA TTGAAGATGC 181 CATGACAGTT TCTGCTTCTG AGAGTCATGA GCTTCCGCAG TCCCGAGACT TCCTTGACGC 241 ACGCACTGGA GAAGACTTGC TATCTGCTGT TCGAAAAGCT GTGGAAGATG AAAAACTGCC 301 ACTGAATGTT GCTGAAGGAA TGGAGGAGTT GTATCAGAAC TATCAGAATG CAGCTGTACA 361 TAGCGGCGTT CCCAAAGCAG ATGAAGCCAT TTTGTATAAC ATGGCTCTTG TATTCGACCG 421 TGTTTTTGTG GATGTGAAGG ATCCTTTTGA ATTCTCGCCG GATCATAAGG TCATTCGTGA 481 ACCTTGTGAC TATTACAAGT TTGGTCAAAA TTATATCCGC CAGCTAGTTG ATTTCAGGAG 541 CTCTTATGTT GGGAATATGT CAGTTATCAG TGAAATGGCA GATAAGCTTA AACA Predicted gene structure (within gDNA segment 24212 to 15711): Exon 1 23612 23359 ( 254 n); cDNA 1 254 ( 254 n); score: 0.992 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 255 352 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 0.92) Exon 3 18512 18426 ( 87 n); cDNA 353 439 ( 87 n); score: 0.954 Intron 3 18425 18280 ( 146 n); Pd: 0.900 (s: 1.00), Pa: 0.983 (s: 0.94) Exon 4 18279 18182 ( 98 n); cDNA 440 537 ( 98 n); score: 0.969 Intron 4 18181 16486 (1696 n); Pd: 0.998 (s: 1.00), Pa: 0.616 (s: 0.96) Exon 5 16485 16429 ( 57 n); cDNA 538 594 ( 57 n); score: 0.965 MATCH C08HBa0320P23.1- SGN-E318668+ 0.981 594 1.000 C PGS_C08HBa0320P23.1-_SGN-E318668+ (23612 23359,19640 19543,18512 18426,18279 18182,16485 16429) Alignment (genomic DNA sequence = upper lines): ATCTTCATTT TCAACTTGTG TACCAGTAGT AGTAACAACT GTTTCTTCTG CAGCAACTTC 23553 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATCTTCATTT TCAACTTGTG TACCACTAGT AGTAACAACT GTTTCTTCTG CAGCAACTTC 60 GACGCTATTC CCGATTTCCT GTTTCGGTGT GAAATCGAGG ACGGTTGGGA TTCGGAAGCT 23493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCTATTC CCGATTTCCT GTTTCGGTGT GAAATCGAGG ACGGTTGGGA TTCGGAAGCT 120 ACGGTGTGCC GTTTTTTGTG CTTCGAAGGT ACGTGGAATG GCAGAAATGA TTGAAGATGC 23433 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGTGCC GTTTTTTGTG CTTCGAAGGT ACGTGGAATG GCAGAAATGA TTGAAGATGC 180 CATGACAGTT TCTGCTTCTG AGAGTCATGA GCTTCCGCAG TCCCGAGACT TCCTTGACGC 23373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGACAGTT TCTGCTTCTG AGAGTCATGA GCTTCCGCAG TCCCGAGACT TCCTTGACGC 240 ACGCACTGGA GAAGGTTTAT CTCTAGCTAT TATTACTTTT TCTTTAATTT GAAATATCTT 23313 |||||||||| |||| ACGCACTGGA GAAG...... .......... .......... .......... .......... 254 GTGCATTTTT TGCTTTCTAT TGCTACTTTC GCTTTTTTCA TTTTTGAATT TGAAGTATCT 23253 .......... .......... .......... .......... .......... .......... 254 TGTGCATTTT GTGCTATTTT CGTGCGGTTT GTTACTCTTG TTCTCTGTTG GAATATCTTG 23193 .......... .......... .......... .......... .......... .......... 254 TGCTATTTCG GTGGGGTTTA ACATTTTGTG CGTATTATGC CAGAGACTGT TGTACACATT 23133 .......... .......... .......... .......... .......... .......... 254 CACGCTACAA TGTTTGTTTT CTTTCGAATG CATTGAATTT CTCAATATTC TTCACAATTA 23073 .......... .......... .......... .......... .......... .......... 254 ACAATGCTGA ACATATGAGG CGCGTTATTA CATTTGCAGA AGTGCATTTA TTTTTTGTTA 23013 .......... .......... .......... .......... .......... .......... 254 ATTTGCCCTA TGCTTGTTGC TCTGAAGAAA ATGTGTTGAG CCCATAGTTA AATTGAACTA 22953 .......... .......... .......... .......... .......... .......... 254 ATATTGCATT TAGCATGGAG TTAACTGTGA ATTTTGTCAA GTAATAATTT CTTTGCCACA 22893 .......... .......... .......... .......... .......... .......... 254 TAAACTATTG AACTCTATGT CCATGGTGAA ATTAAACATC GTTATCTAAT GTTGTCTACT 22833 .......... .......... .......... .......... .......... .......... 254 CTTTGGTTTT TCCTATAAGT CCTATCAAAT AGACTTGTAG TACATCAGTT CCATTCTAGG 22773 .......... .......... .......... .......... .......... .......... 254 AGATGAATTG GTTGGTTGCA ATAGCAGTTT CAGTAGTGGT ATTAATGAAA TTGGTGTTGG 22713 .......... .......... .......... .......... .......... .......... 254 CATAAGGTTG CAATAAGAGT ACTTATCTGT GCAAGCATGC TTAACAGTTT AAACATCAAG 22653 .......... .......... .......... .......... .......... .......... 254 TCAATGAGTT CTTTTAACCT TGATGCACCG GGTATAGTAT GTTTTGATCT TTCTAGTAAT 22593 .......... .......... .......... .......... .......... .......... 254 CTATGGTGAT ATCTATTAGG ACGGACTTAC AGTAAGCTCA ACGATTGTTT TATTTTTAAC 22533 .......... .......... .......... .......... .......... .......... 254 GGTGAACTGG ATGTATTGTC TATGAAGCAC GTCAGTTGGC TTTGTTGGGT CTAACTTTAT 22473 .......... .......... .......... .......... .......... .......... 254 AAGGGACTTC TCGAATGGAT AGTTAGCAGA ACTACACTTG AGGAATGGTG CTACTATAAT 22413 .......... .......... .......... .......... .......... .......... 254 GTAACACCAA TCCATCTTGA TGGAAGTTCT CGTTAACCTG TGGATGGTGA AGGACTCGAC 22353 .......... .......... .......... .......... .......... .......... 254 AAATTTATAG TGGATGGGAT GATGGGAATG ATATCAATTG AAGAGTAAGG TGAAATGATT 22293 .......... .......... .......... .......... .......... .......... 254 AGGAGGTGGA AGATCTTGTT ATGAACACCA AATCAAACAG GCAGACAAGC AACAGTGGAT 22233 .......... .......... .......... .......... .......... .......... 254 TGTTAAAGAG AAATAAGACG CTTATTGGTT TCTATTCACT TTCTGCTTTC TCTTTTGCCC 22173 .......... .......... .......... .......... .......... .......... 254 CCCATTTGGT GTGAAGGATT TAATTGCTGT GAGGTAGAAT CTATAGACTA GTTTGCATTC 22113 .......... .......... .......... .......... .......... .......... 254 ATGGAGATTC TGTAACTATT CCAAAGAGAT GGGAAGTTCG AGACAATTGA GGTTTTTTCT 22053 .......... .......... .......... .......... .......... .......... 254 TGAAATTGGA AGCAATTACT AATTCATGGT AGGACATGTA CTGATGTACA TAGTAAAAAC 21993 .......... .......... .......... .......... .......... .......... 254 TTCATTCTCG AATTCTCTGA GAACTTATGT TGATAATTTT TTAGCAGTTG GTTAGGCAAC 21933 .......... .......... .......... .......... .......... .......... 254 AATTATTTTT CATAGAAGTA CTCTTTTGTT TTGTACAACA AGCTTTCTCT AGACTGTGTT 21873 .......... .......... .......... .......... .......... .......... 254 TCATATTTGA CATTTATTAT GGACACGTGA AGTTTTGATG GTTGATTCTG GAATCACCAA 21813 .......... .......... .......... .......... .......... .......... 254 TTTGCATATT CATATTTGGG ACATTGAAGT CACCAATTAA GACAAAAGGA TCAAATTTTG 21753 .......... .......... .......... .......... .......... .......... 254 ACATTTTGTG GTAGTATCTC GTTTTTAGCT TTCTTTACAA AATTGTATTG CTATACAGTA 21693 .......... .......... .......... .......... .......... .......... 254 TCTCTTGCTC CCTGTCTTTA CAGTCACCAT TCAATCTCTG CCTCCCTTCA TTTGACTGCT 21633 .......... .......... .......... .......... .......... .......... 254 TTTTTGTCTA CCGCTATGCA TGCGTACTCC ATTCTATTAC TGATGGTTGG TGATGTATAG 21573 .......... .......... .......... .......... .......... .......... 254 TTGGTTCCTT CTCTGGACAT ACACTAGGTT ATTATGGTAA CTTTAGCTTG GTTAAGTAAT 21513 .......... .......... .......... .......... .......... .......... 254 GCTTGGCAGT TTCTGCATTT TTTTTAAATG TATAGATCTC CTCTTGATCG ACAACAAAGT 21453 .......... .......... .......... .......... .......... .......... 254 CATTACTTCG TATGAAGCAT TCGTGGATCT TAGTTTCAAG CTAGCTTACA CTTCATTTTG 21393 .......... .......... .......... .......... .......... .......... 254 TCGTATCTTA GGATCTTAGT TTCAAGCTAG CTTATACTTC ATTTTGTCGT ATCTTACAAG 21333 .......... .......... .......... .......... .......... .......... 254 TCTCAGAACC TATGCAGGTA TTGTAAAAAA CATGACCTAG TTGGATCTTT TTTCCGATAA 21273 .......... .......... .......... .......... .......... .......... 254 CGCGTCACCT AGTTGGATCT TGACTGACAT AACACACACT CATACTATGT TTGCACTTTG 21213 .......... .......... .......... .......... .......... .......... 254 AATGTGGTTT CTTATTCATT TGAGAAACAG AAACAAATAC GATGCTGAAG ACTTATGTGG 21153 .......... .......... .......... .......... .......... .......... 254 TTTGTATGCT ATTCTGATAG ATTTTCGTTT CAGTAAGTAG TTTAGAATGT GGATTGGAAG 21093 .......... .......... .......... .......... .......... .......... 254 CTTAGTTTTC TTTCTGATTT TGGTCTTCAA CTCCTTTTGG ATCTTCCTTA TTGCTTTCTG 21033 .......... .......... .......... .......... .......... .......... 254 GGGGATTTCG ATTTTCCTGG TAATTGTCAT GATGTCGTAA TCATATACTA TCTTAATACA 20973 .......... .......... .......... .......... .......... .......... 254 CGTAAGTGTG CCACAGTGGC ATAAGGGGGA TTACCTATGT AAAGAAAATT ACATAAAGCA 20913 .......... .......... .......... .......... .......... .......... 254 GTTAAAGCAC TATAAACTAG GTCATCTCCA ATGATATAAT CTTATATGGA CTAGAATAGG 20853 .......... .......... .......... .......... .......... .......... 254 ATTTTCAGCA AGAAGTACAT TTAAAGAACC GTGACTTAGC ATAAATGTTA AAATTATTGT 20793 .......... .......... .......... .......... .......... .......... 254 ACAAATGCGG TCTTAAGTTT CTTGTAAAAC AGGATGAGGT ATAAAGTTGT GATTCTCAGA 20733 .......... .......... .......... .......... .......... .......... 254 ATGCTTCCTA TTAGACTTTA ATGGAGCAGT TTTCCTTCTT TTCCATGACT TGTTTTTCTT 20673 .......... .......... .......... .......... .......... .......... 254 TTTTTGATAA CCACGGTGTC TGAGCACAAG TACCTGGTAA CTGTGCCTAT CAAGGATTGG 20613 .......... .......... .......... .......... .......... .......... 254 ATATATGGCA AAAAGTCATT TTTTGAAAAT TAAAATATGG CTGAAAATCT GGAGTGCTTT 20553 .......... .......... .......... .......... .......... .......... 254 TTTTCTGTCT TTTTGGTAAA CTTGGTATAA TCTTCTCCTT TCTTTTTTCT TTTCGGGCTG 20493 .......... .......... .......... .......... .......... .......... 254 TGGCTTGTGT CTTGTGCCTT GACAGACATC TGAAGCAGTT GTCAACCAGC ACTGTCTGTC 20433 .......... .......... .......... .......... .......... .......... 254 CTAGGGGCTG GTCATCTACA TGAAATTTTA CAAACTTGGT CTTTAAAACA TGTCATGTCT 20373 .......... .......... .......... .......... .......... .......... 254 TAGAGGTTAG TCATCTACAT GAAGTCTTAC AAAGTAGGGT CTTAGATACA TATCATCTTG 20313 .......... .......... .......... .......... .......... .......... 254 TTGGCTTATA TTTTTGACAG GTGATATGGG ATCAGGGATG AGTGCAGTAT ATGTTGCAAG 20253 .......... .......... .......... .......... .......... .......... 254 GTATATATAA ATATTTGTCA AGGTAATCAG ATAGCTTGAG TCTTATACTT GTCTTATACA 20193 .......... .......... .......... .......... .......... .......... 254 TGTTGTATAC TTGGTACTTC TTTGGGATTT GAAGTATCTC ATAGGTTTTT TCGTGGTGTC 20133 .......... .......... .......... .......... .......... .......... 254 TAGTTTCCTT TGAATACTTG TATGCTTCAA CATTTATGGG TGCATTACCA TATGGAACTA 20073 .......... .......... .......... .......... .......... .......... 254 TTTATTGATA TTAATTACCA ATCAACAAGA GAAACCGTGA ACATCTGAGT AAGGGTTGGT 20013 .......... .......... .......... .......... .......... .......... 254 ATTGCAAGTT ATAGTTCAAG AATAGCGGAA GTGCTGCAAT ATTCTAGAAA ACTTCGTCTT 19953 .......... .......... .......... .......... .......... .......... 254 AAAAGGATTT AGATACCTAC TCAGATGTTA GTGGCAGTTG CAAGTATAAG ACATTTGCTG 19893 .......... .......... .......... .......... .......... .......... 254 CCGATTCTTA TCTACTCATC CTGCTATCTT TTCAGTTGCA AGTATAAGAC ATTTGCTGCC 19833 .......... .......... .......... .......... .......... .......... 254 GATTCTTATC TACTCATCCT GCTATCTTTC AGTGTCTTGA TTCTATTGTT TGCTAAATTT 19773 .......... .......... .......... .......... .......... .......... 254 AAACATACTG CTCAGCAGAT GATTCCCTTG TTCTTCTGCG GGGACTTTAT TTTGGTAGAT 19713 .......... .......... .......... .......... .......... .......... 254 CTATTCTAAT TGTTCTGATT GAACCTGTGT CTCTCTTTCC CCCGTGCATT GGGTGTTCTA 19653 .......... .......... .......... .......... .......... .......... 254 TTTTCTGTGC AGACTTGCTA TCTGCTGTTC GAAAAGCTGT GGAAGATGAA AAACTGCCAC 19593 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ACTTGCTA TCTGCTGTTC GAAAAGCTGT GGAAGATGAA AAACTGCCAC 302 TGAATGTTGC TGAAGGAATG GAGGAGTTGT ATCAGAACTA TCAGAATGCA GTAAAACACC 19533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATGTTGC TGAAGGAATG GAGGAGTTGT ATCAGAACTA TCAGAATGCA .......... 352 TTTCTTTGAA CTTGTGGTTA AATGTACTCT TTTAAGTGTT GGGTCATGGG TGCTTTGTTC 19473 .......... .......... .......... .......... .......... .......... 352 GCTTAGATAT GTTTGCTCAT ATGCAAGAGT CTTCTTGCAT GAACATACTT TCTGGGTCAT 19413 .......... .......... .......... .......... .......... .......... 352 AACATGCTTT CTTAAGTTAC TAAAGAACAG TATATAATAG ATTTAAGATG GTTGAGAATA 19353 .......... .......... .......... .......... .......... .......... 352 CAATTAAATA ATAAACGTGT GCTCTCTCTA ATGGCTTAGG CTTTTAGATG AGATGGTTAC 19293 .......... .......... .......... .......... .......... .......... 352 ACACTTCAAC AATGATGAAT ATTTTTTTTC TTCTAATGTA TTTGATCATT TGAATTTAGT 19233 .......... .......... .......... .......... .......... .......... 352 GGATGGTATT ATGTAACTAC ACGCTGTTGG TATAAAAAAA GTTCACGTTG TACCTATAAC 19173 .......... .......... .......... .......... .......... .......... 352 AGTAGATAAA ACGCTGGAGC TGGAAAAGCT AAAGTGGAGA GAGAAATCAC AATTTGGCAT 19113 .......... .......... .......... .......... .......... .......... 352 GCCATTACTT TTTTGTGACC AATTATGTGG AAAGACATTA TTACGGGGCC AAATGTTTTC 19053 .......... .......... .......... .......... .......... .......... 352 AGAAAATGAC CTGAAGATAA TAGGTTAAGC CCTTGTGAAG ATTCTAAATG TAGTCTAACA 18993 .......... .......... .......... .......... .......... .......... 352 TTCAACACGT TCAGTATCAT TTCTTCCTAG AGCATGGAAA ATATGATCTT GTGATGACAA 18933 .......... .......... .......... .......... .......... .......... 352 AACAATAATA AAGATAAATC TAGAGGAGGT GCTTATATTT GTATGTTTGT CTTTGCCTGA 18873 .......... .......... .......... .......... .......... .......... 352 TTTTTCCGCA CGTGTCTTTC TTGTTCCTAC TTCTCTAGTA TATCTTATTT TCACTAATAA 18813 .......... .......... .......... .......... .......... .......... 352 ATAATAACTC GCCTCCTCCT TCCCTCTTTC CTACTAAATT TTAGAGAATT TCATTTATTT 18753 .......... .......... .......... .......... .......... .......... 352 CATTCTTGGA AAGACTACTA CTTTTGGACT TACCATATTT GGTGAAGTAA TCCAATCTAT 18693 .......... .......... .......... .......... .......... .......... 352 CTTTTAGACT TGTCAGATTA TCAATCTGTT TGGATTTAAT TTATTCATGA TACTCGTGCG 18633 .......... .......... .......... .......... .......... .......... 352 CTTTTCTTTG AGAGAGAACG AGTTTGTTGA GACCTGGAGT TCGGCATTTT CTTTTTTGTT 18573 .......... .......... .......... .......... .......... .......... 352 TATTTGGAGA ACTTGTTGTG GTCATGTGCC CTCTTGATTT TTCCTGATCG TTTTTTATAG 18513 .......... .......... .......... .......... .......... .......... 352 GTTTTACAAA GCGGCGTTCC CAAAGCAGAT GAGGCCATTT TGTATAACAT GGCTCTTGTA 18453 | | |||| | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GCTGTACATA GCGGCGTTCC CAAAGCAGAT GAAGCCATTT TGTATAACAT GGCTCTTGTA 412 TTCGACCGTG TTTTTGTGGA TGTGAAGGTA TTCTTCTGCC GTGTTGATCT TTCAAATTCA 18393 |||||||||| |||||||||| ||||||| TTCGACCGTG TTTTTGTGGA TGTGAAG... .......... .......... .......... 439 TGCTAGAAGT TTCCCCTATA TCTTTGTTTC TCGTTACTTC ATCTAAGCAC ACATGTATTC 18333 .......... .......... .......... .......... .......... .......... 439 TATCAAGTTG TTAGAATGTA AAATTGTAAA ATGTAGCAAT GCTCTTATTT CAGGATCCTT 18273 ||||||| .......... .......... .......... .......... .......... ...GATCCTT 446 TTGAATTCTC GCCGTATCAT AAGGCCATTC GTGAACCTTT TGACTATTAC AAGTTTGGTC 18213 |||||||||| |||| ||||| |||| ||||| ||||||||| |||||||||| |||||||||| TTGAATTCTC GCCGGATCAT AAGGTCATTC GTGAACCTTG TGACTATTAC AAGTTTGGTC 506 AAAATTATAT CCGCCAGCTA GTTGATTTCA GGTGAGTCTC AGTTCTCTCT CTGTAGTGTG 18153 |||||||||| |||||||||| |||||||||| | AAAATTATAT CCGCCAGCTA GTTGATTTCA G......... .......... .......... 537 TATCATGTAA TAGTTTGACT AACTTAAAAA ATGCGCGGTT CTTTCAATCT TGTTAATGAT 18093 .......... .......... .......... .......... .......... .......... 537 TGAATTCACA GGAAATATTC GAGTAAACAG CTTAAAATAT CCTTTGATTT ACATCCTTTT 18033 .......... .......... .......... .......... .......... .......... 537 GTCGTTGTAA TATTTGCTTG TTCAGATCAA CGTATTCAAG ACCAGGCATG CTCTATATGT 17973 .......... .......... .......... .......... .......... .......... 537 CGTCTTTATA CCTTGTAAAT AATGGAATGA TGTCTATATA GATTTAGGTA CAGATAAGAT 17913 .......... .......... .......... .......... .......... .......... 537 GGTGGCTAGT TCTAGTACAT ATACAAGGTG GTGGGTGAAT ATATGTGAGA ATAACTTGTT 17853 .......... .......... .......... .......... .......... .......... 537 GGAATATTGG GTTAAGAGCA GATAGTAAAA CTACTGAAAT CATTTATATC TCTAAAGGGG 17793 .......... .......... .......... .......... .......... .......... 537 AAAGGGCTTA TGTCATGTTA GAATAATTGT TCTAAACATT AATGGCCAGC AGAAAATCAT 17733 .......... .......... .......... .......... .......... .......... 537 TTTGACCATA TTGATGAAAG GGATAACTAA ATCTTTTGCA ATTACGTATG GGGAAAAATA 17673 .......... .......... .......... .......... .......... .......... 537 TTTTTGTTAT TACCCTAATT ATTTTTTCAT TGTAGTTTAG GTATAATGAT GCTATTTTCT 17613 .......... .......... .......... .......... .......... .......... 537 CAATTGGTTG GGAAAATCCC AATTTCTTTA GCTGAAAGAA AGAGCTAAGC TGTTGCACTA 17553 .......... .......... .......... .......... .......... .......... 537 TTCTGATGAA TAGTTCATCA TCCTCTGGTG TCTGTATATT ATTTTTACCC AGTGATGTTC 17493 .......... .......... .......... .......... .......... .......... 537 TTATTAATGC CTCATAGCAA TCCTTAAGTC CAAAAAGTAT GACGCGATTC AAAATACTGG 17433 .......... .......... .......... .......... .......... .......... 537 GTGTCTAACA ATTTAATATC CATTCAATCA GACCTTATTA CATTGATTTT ATGATCTAAA 17373 .......... .......... .......... .......... .......... .......... 537 TATGGATATT TTGAAAACAA CATAAAAAGT ATCCTTCTTT CATGATCTAA ATATGGATAT 17313 .......... .......... .......... .......... .......... .......... 537 TTTGAAAACA ACATAAAAAG TATCCTTCTT TCAAAGAAGG ATACTTTTTA AGTATGTAAG 17253 .......... .......... .......... .......... .......... .......... 537 AAACCTCCTG AAAAGAGGAA TAATTAGTAC TTACAAATTG AAGTCCCGTA GTTATTGTAT 17193 .......... .......... .......... .......... .......... .......... 537 GAACAACCTA ATCACCACAC TAAGTTGATT TCTATTTGAC TGTTTAGCAG CTAGTTAATC 17133 .......... .......... .......... .......... .......... .......... 537 TGTAGCATTT TGACGAGTTG TGTGGGTTGA GTCACCAATG AAGCTTAGCC CATGTGTAAA 17073 .......... .......... .......... .......... .......... .......... 537 ATTACTATTG TGTAGGGATA TATTTTTCTC CCTCCGTTTC AATTTATGTG TCTTAGTGTG 17013 .......... .......... .......... .......... .......... .......... 537 GCTGGACACG TGTTCAAGGT AGGGAGATTT TTTAATCTTG TAATGTTAAA CTAAAGATAT 16953 .......... .......... .......... .......... .......... .......... 537 AGGTAATGTA TCAAAATGAT TTTGATTCTT GTGTTCTTAA ACATGCTATG CAGGATGTTT 16893 .......... .......... .......... .......... .......... .......... 537 GGAATTAAAG AGTTAAGCAT ACCAAAAAGG AAAGTAAGAC GCATTATTTT TTAAAGTAAG 16833 .......... .......... .......... .......... .......... .......... 537 ACGCATATTT TAAAACAAAG GGTGAAGTTG CACATTGTTG AGTAGTGGAT AGGAATTCAA 16773 .......... .......... .......... .......... .......... .......... 537 AATTTGTAAT TCCTATATAT GAAGTATGAT GTTAGAGGGT TGTTTGTCTT GTTCTAGGAA 16713 .......... .......... .......... .......... .......... .......... 537 CTCCCTGCTT TAACTCTTAA CAGGGGTGTT TGCGAACAAT ATCTCCATTA TTGACAGACA 16653 .......... .......... .......... .......... .......... .......... 537 TACCGTTGCT ATTGAATATT TTTAATCAGC TTTAGTGAGT GTATATCAAA TGTGGTTATT 16593 .......... .......... .......... .......... .......... .......... 537 AGAAATTGAT CTTTCTTTGG CTCTTTGCTT TAAAGTGAAC AGCCTTGTTC CCTGCAGATC 16533 .......... .......... .......... .......... .......... .......... 537 TCATGATTTA CTTCGGAATC TAACCTCTAC TATTTTCGAG TTTGTAGGAG CTCTTATGTT 16473 ||| |||||||||| .......... .......... .......... .......... .......GAG CTCTTATGTT 550 GGGAATATGT CAGTTTTCAG TGAAATGGCA GAGAAGCTTA AACA 16429 |||||||||| ||||| |||| |||||||||| || ||||||| |||| GGGAATATGT CAGTTATCAG TGAAATGGCA GATAAGCTTA AACA 594 hqPGS_C08HBa0320P23.1-_SGN-E318668+ (23612 23359,19640 19543,18512 18426,18279 18182,16485 16429) ******************************************************************************** EST sequence 137 +strand 511 n (File: SGN-E265448+) 1 GCTTCGACGC TATTCCCGAT TTCCTGTTTC GGTGTGAAAT CGAGGACGGT TGGGATTCGG 61 AAGCTACGGT GTGCCGTTTT TTGTGCTTCG AAGGTACGTG GAATGGCAGA AATGATTGAA 121 GATGCCATGA CAGTTTCTGC TTCTGAGAGT CATGAGCTTC CGCAGTCCCG AGACTTCCTT 181 GACGCACGCA CTGGAGAAGA CTTGCTATCT GCTGTTCGAA AAGCTGTGGA AGATGAAAAA 241 CTGCCACTGA ATGTTGCTGA AGGAATGGAG GAGTTGTATC AGAACTATCA GAATGCAGTT 301 TTACAAAGCG GCGTTCCCAA AGCAGATGAG GCCATTTTGT ATAACATGGC TCTTGTATTC 361 GACCGTGTTT TTGTGGATGT GAAGGATCCT TTTGAATTCT CGCCGTATCA TAAGGCCATT 421 CGTGAACCTT TTGACTATTA CAAGTTTGGT CAAAATTATA TCCGCCAGCT AGTTGATTTC 481 AAGAGCTCTT ATGTTGGGAA TATGTCAGTT T Predicted gene structure (within gDNA segment 24166 to 17273): Exon 1 23556 23359 ( 198 n); cDNA 2 199 ( 198 n); score: 1.000 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 200 297 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 18512 18426 ( 87 n); cDNA 298 384 ( 87 n); score: 1.000 Intron 3 18425 18280 ( 146 n); Pd: 0.900 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 18279 18183 ( 97 n); cDNA 385 481 ( 97 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E265448+ 1.000 480 0.939 C PGS_C08HBa0320P23.1-_SGN-E265448+ (23556 23359,19640 19543,18512 18426,18279 18183) Alignment (genomic DNA sequence = upper lines): CTTCGACGCT ATTCCCGATT TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA 23497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCGACGCT ATTCCCGATT TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA 61 AGCTACGGTG TGCCGTTTTT TGTGCTTCGA AGGTACGTGG AATGGCAGAA ATGATTGAAG 23437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTACGGTG TGCCGTTTTT TGTGCTTCGA AGGTACGTGG AATGGCAGAA ATGATTGAAG 121 ATGCCATGAC AGTTTCTGCT TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG 23377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCATGAC AGTTTCTGCT TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG 181 ACGCACGCAC TGGAGAAGGT TTATCTCTAG CTATTATTAC TTTTTCTTTA ATTTGAAATA 23317 |||||||||| |||||||| ACGCACGCAC TGGAGAAG.. .......... .......... .......... .......... 199 TCTTGTGCAT TTTTTGCTTT CTATTGCTAC TTTCGCTTTT TTCATTTTTG AATTTGAAGT 23257 .......... .......... .......... .......... .......... .......... 199 ATCTTGTGCA TTTTGTGCTA TTTTCGTGCG GTTTGTTACT CTTGTTCTCT GTTGGAATAT 23197 .......... .......... .......... .......... .......... .......... 199 CTTGTGCTAT TTCGGTGGGG TTTAACATTT TGTGCGTATT ATGCCAGAGA CTGTTGTACA 23137 .......... .......... .......... .......... .......... .......... 199 CATTCACGCT ACAATGTTTG TTTTCTTTCG AATGCATTGA ATTTCTCAAT ATTCTTCACA 23077 .......... .......... .......... .......... .......... .......... 199 ATTAACAATG CTGAACATAT GAGGCGCGTT ATTACATTTG CAGAAGTGCA TTTATTTTTT 23017 .......... .......... .......... .......... .......... .......... 199 GTTAATTTGC CCTATGCTTG TTGCTCTGAA GAAAATGTGT TGAGCCCATA GTTAAATTGA 22957 .......... .......... .......... .......... .......... .......... 199 ACTAATATTG CATTTAGCAT GGAGTTAACT GTGAATTTTG TCAAGTAATA ATTTCTTTGC 22897 .......... .......... .......... .......... .......... .......... 199 CACATAAACT ATTGAACTCT ATGTCCATGG TGAAATTAAA CATCGTTATC TAATGTTGTC 22837 .......... .......... .......... .......... .......... .......... 199 TACTCTTTGG TTTTTCCTAT AAGTCCTATC AAATAGACTT GTAGTACATC AGTTCCATTC 22777 .......... .......... .......... .......... .......... .......... 199 TAGGAGATGA ATTGGTTGGT TGCAATAGCA GTTTCAGTAG TGGTATTAAT GAAATTGGTG 22717 .......... .......... .......... .......... .......... .......... 199 TTGGCATAAG GTTGCAATAA GAGTACTTAT CTGTGCAAGC ATGCTTAACA GTTTAAACAT 22657 .......... .......... .......... .......... .......... .......... 199 CAAGTCAATG AGTTCTTTTA ACCTTGATGC ACCGGGTATA GTATGTTTTG ATCTTTCTAG 22597 .......... .......... .......... .......... .......... .......... 199 TAATCTATGG TGATATCTAT TAGGACGGAC TTACAGTAAG CTCAACGATT GTTTTATTTT 22537 .......... .......... .......... .......... .......... .......... 199 TAACGGTGAA CTGGATGTAT TGTCTATGAA GCACGTCAGT TGGCTTTGTT GGGTCTAACT 22477 .......... .......... .......... .......... .......... .......... 199 TTATAAGGGA CTTCTCGAAT GGATAGTTAG CAGAACTACA CTTGAGGAAT GGTGCTACTA 22417 .......... .......... .......... .......... .......... .......... 199 TAATGTAACA CCAATCCATC TTGATGGAAG TTCTCGTTAA CCTGTGGATG GTGAAGGACT 22357 .......... .......... .......... .......... .......... .......... 199 CGACAAATTT ATAGTGGATG GGATGATGGG AATGATATCA ATTGAAGAGT AAGGTGAAAT 22297 .......... .......... .......... .......... .......... .......... 199 GATTAGGAGG TGGAAGATCT TGTTATGAAC ACCAAATCAA ACAGGCAGAC AAGCAACAGT 22237 .......... .......... .......... .......... .......... .......... 199 GGATTGTTAA AGAGAAATAA GACGCTTATT GGTTTCTATT CACTTTCTGC TTTCTCTTTT 22177 .......... .......... .......... .......... .......... .......... 199 GCCCCCCATT TGGTGTGAAG GATTTAATTG CTGTGAGGTA GAATCTATAG ACTAGTTTGC 22117 .......... .......... .......... .......... .......... .......... 199 ATTCATGGAG ATTCTGTAAC TATTCCAAAG AGATGGGAAG TTCGAGACAA TTGAGGTTTT 22057 .......... .......... .......... .......... .......... .......... 199 TTCTTGAAAT TGGAAGCAAT TACTAATTCA TGGTAGGACA TGTACTGATG TACATAGTAA 21997 .......... .......... .......... .......... .......... .......... 199 AAACTTCATT CTCGAATTCT CTGAGAACTT ATGTTGATAA TTTTTTAGCA GTTGGTTAGG 21937 .......... .......... .......... .......... .......... .......... 199 CAACAATTAT TTTTCATAGA AGTACTCTTT TGTTTTGTAC AACAAGCTTT CTCTAGACTG 21877 .......... .......... .......... .......... .......... .......... 199 TGTTTCATAT TTGACATTTA TTATGGACAC GTGAAGTTTT GATGGTTGAT TCTGGAATCA 21817 .......... .......... .......... .......... .......... .......... 199 CCAATTTGCA TATTCATATT TGGGACATTG AAGTCACCAA TTAAGACAAA AGGATCAAAT 21757 .......... .......... .......... .......... .......... .......... 199 TTTGACATTT TGTGGTAGTA TCTCGTTTTT AGCTTTCTTT ACAAAATTGT ATTGCTATAC 21697 .......... .......... .......... .......... .......... .......... 199 AGTATCTCTT GCTCCCTGTC TTTACAGTCA CCATTCAATC TCTGCCTCCC TTCATTTGAC 21637 .......... .......... .......... .......... .......... .......... 199 TGCTTTTTTG TCTACCGCTA TGCATGCGTA CTCCATTCTA TTACTGATGG TTGGTGATGT 21577 .......... .......... .......... .......... .......... .......... 199 ATAGTTGGTT CCTTCTCTGG ACATACACTA GGTTATTATG GTAACTTTAG CTTGGTTAAG 21517 .......... .......... .......... .......... .......... .......... 199 TAATGCTTGG CAGTTTCTGC ATTTTTTTTA AATGTATAGA TCTCCTCTTG ATCGACAACA 21457 .......... .......... .......... .......... .......... .......... 199 AAGTCATTAC TTCGTATGAA GCATTCGTGG ATCTTAGTTT CAAGCTAGCT TACACTTCAT 21397 .......... .......... .......... .......... .......... .......... 199 TTTGTCGTAT CTTAGGATCT TAGTTTCAAG CTAGCTTATA CTTCATTTTG TCGTATCTTA 21337 .......... .......... .......... .......... .......... .......... 199 CAAGTCTCAG AACCTATGCA GGTATTGTAA AAAACATGAC CTAGTTGGAT CTTTTTTCCG 21277 .......... .......... .......... .......... .......... .......... 199 ATAACGCGTC ACCTAGTTGG ATCTTGACTG ACATAACACA CACTCATACT ATGTTTGCAC 21217 .......... .......... .......... .......... .......... .......... 199 TTTGAATGTG GTTTCTTATT CATTTGAGAA ACAGAAACAA ATACGATGCT GAAGACTTAT 21157 .......... .......... .......... .......... .......... .......... 199 GTGGTTTGTA TGCTATTCTG ATAGATTTTC GTTTCAGTAA GTAGTTTAGA ATGTGGATTG 21097 .......... .......... .......... .......... .......... .......... 199 GAAGCTTAGT TTTCTTTCTG ATTTTGGTCT TCAACTCCTT TTGGATCTTC CTTATTGCTT 21037 .......... .......... .......... .......... .......... .......... 199 TCTGGGGGAT TTCGATTTTC CTGGTAATTG TCATGATGTC GTAATCATAT ACTATCTTAA 20977 .......... .......... .......... .......... .......... .......... 199 TACACGTAAG TGTGCCACAG TGGCATAAGG GGGATTACCT ATGTAAAGAA AATTACATAA 20917 .......... .......... .......... .......... .......... .......... 199 AGCAGTTAAA GCACTATAAA CTAGGTCATC TCCAATGATA TAATCTTATA TGGACTAGAA 20857 .......... .......... .......... .......... .......... .......... 199 TAGGATTTTC AGCAAGAAGT ACATTTAAAG AACCGTGACT TAGCATAAAT GTTAAAATTA 20797 .......... .......... .......... .......... .......... .......... 199 TTGTACAAAT GCGGTCTTAA GTTTCTTGTA AAACAGGATG AGGTATAAAG TTGTGATTCT 20737 .......... .......... .......... .......... .......... .......... 199 CAGAATGCTT CCTATTAGAC TTTAATGGAG CAGTTTTCCT TCTTTTCCAT GACTTGTTTT 20677 .......... .......... .......... .......... .......... .......... 199 TCTTTTTTTG ATAACCACGG TGTCTGAGCA CAAGTACCTG GTAACTGTGC CTATCAAGGA 20617 .......... .......... .......... .......... .......... .......... 199 TTGGATATAT GGCAAAAAGT CATTTTTTGA AAATTAAAAT ATGGCTGAAA ATCTGGAGTG 20557 .......... .......... .......... .......... .......... .......... 199 CTTTTTTTCT GTCTTTTTGG TAAACTTGGT ATAATCTTCT CCTTTCTTTT TTCTTTTCGG 20497 .......... .......... .......... .......... .......... .......... 199 GCTGTGGCTT GTGTCTTGTG CCTTGACAGA CATCTGAAGC AGTTGTCAAC CAGCACTGTC 20437 .......... .......... .......... .......... .......... .......... 199 TGTCCTAGGG GCTGGTCATC TACATGAAAT TTTACAAACT TGGTCTTTAA AACATGTCAT 20377 .......... .......... .......... .......... .......... .......... 199 GTCTTAGAGG TTAGTCATCT ACATGAAGTC TTACAAAGTA GGGTCTTAGA TACATATCAT 20317 .......... .......... .......... .......... .......... .......... 199 CTTGTTGGCT TATATTTTTG ACAGGTGATA TGGGATCAGG GATGAGTGCA GTATATGTTG 20257 .......... .......... .......... .......... .......... .......... 199 CAAGGTATAT ATAAATATTT GTCAAGGTAA TCAGATAGCT TGAGTCTTAT ACTTGTCTTA 20197 .......... .......... .......... .......... .......... .......... 199 TACATGTTGT ATACTTGGTA CTTCTTTGGG ATTTGAAGTA TCTCATAGGT TTTTTCGTGG 20137 .......... .......... .......... .......... .......... .......... 199 TGTCTAGTTT CCTTTGAATA CTTGTATGCT TCAACATTTA TGGGTGCATT ACCATATGGA 20077 .......... .......... .......... .......... .......... .......... 199 ACTATTTATT GATATTAATT ACCAATCAAC AAGAGAAACC GTGAACATCT GAGTAAGGGT 20017 .......... .......... .......... .......... .......... .......... 199 TGGTATTGCA AGTTATAGTT CAAGAATAGC GGAAGTGCTG CAATATTCTA GAAAACTTCG 19957 .......... .......... .......... .......... .......... .......... 199 TCTTAAAAGG ATTTAGATAC CTACTCAGAT GTTAGTGGCA GTTGCAAGTA TAAGACATTT 19897 .......... .......... .......... .......... .......... .......... 199 GCTGCCGATT CTTATCTACT CATCCTGCTA TCTTTTCAGT TGCAAGTATA AGACATTTGC 19837 .......... .......... .......... .......... .......... .......... 199 TGCCGATTCT TATCTACTCA TCCTGCTATC TTTCAGTGTC TTGATTCTAT TGTTTGCTAA 19777 .......... .......... .......... .......... .......... .......... 199 ATTTAAACAT ACTGCTCAGC AGATGATTCC CTTGTTCTTC TGCGGGGACT TTATTTTGGT 19717 .......... .......... .......... .......... .......... .......... 199 AGATCTATTC TAATTGTTCT GATTGAACCT GTGTCTCTCT TTCCCCCGTG CATTGGGTGT 19657 .......... .......... .......... .......... .......... .......... 199 TCTATTTTCT GTGCAGACTT GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG 19597 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......ACTT GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG 243 CCACTGAATG TTGCTGAAGG AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCAGTAAAA 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCACTGAATG TTGCTGAAGG AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCA...... 297 CACCTTTCTT TGAACTTGTG GTTAAATGTA CTCTTTTAAG TGTTGGGTCA TGGGTGCTTT 19477 .......... .......... .......... .......... .......... .......... 297 GTTCGCTTAG ATATGTTTGC TCATATGCAA GAGTCTTCTT GCATGAACAT ACTTTCTGGG 19417 .......... .......... .......... .......... .......... .......... 297 TCATAACATG CTTTCTTAAG TTACTAAAGA ACAGTATATA ATAGATTTAA GATGGTTGAG 19357 .......... .......... .......... .......... .......... .......... 297 AATACAATTA AATAATAAAC GTGTGCTCTC TCTAATGGCT TAGGCTTTTA GATGAGATGG 19297 .......... .......... .......... .......... .......... .......... 297 TTACACACTT CAACAATGAT GAATATTTTT TTTCTTCTAA TGTATTTGAT CATTTGAATT 19237 .......... .......... .......... .......... .......... .......... 297 TAGTGGATGG TATTATGTAA CTACACGCTG TTGGTATAAA AAAAGTTCAC GTTGTACCTA 19177 .......... .......... .......... .......... .......... .......... 297 TAACAGTAGA TAAAACGCTG GAGCTGGAAA AGCTAAAGTG GAGAGAGAAA TCACAATTTG 19117 .......... .......... .......... .......... .......... .......... 297 GCATGCCATT ACTTTTTTGT GACCAATTAT GTGGAAAGAC ATTATTACGG GGCCAAATGT 19057 .......... .......... .......... .......... .......... .......... 297 TTTCAGAAAA TGACCTGAAG ATAATAGGTT AAGCCCTTGT GAAGATTCTA AATGTAGTCT 18997 .......... .......... .......... .......... .......... .......... 297 AACATTCAAC ACGTTCAGTA TCATTTCTTC CTAGAGCATG GAAAATATGA TCTTGTGATG 18937 .......... .......... .......... .......... .......... .......... 297 ACAAAACAAT AATAAAGATA AATCTAGAGG AGGTGCTTAT ATTTGTATGT TTGTCTTTGC 18877 .......... .......... .......... .......... .......... .......... 297 CTGATTTTTC CGCACGTGTC TTTCTTGTTC CTACTTCTCT AGTATATCTT ATTTTCACTA 18817 .......... .......... .......... .......... .......... .......... 297 ATAAATAATA ACTCGCCTCC TCCTTCCCTC TTTCCTACTA AATTTTAGAG AATTTCATTT 18757 .......... .......... .......... .......... .......... .......... 297 ATTTCATTCT TGGAAAGACT ACTACTTTTG GACTTACCAT ATTTGGTGAA GTAATCCAAT 18697 .......... .......... .......... .......... .......... .......... 297 CTATCTTTTA GACTTGTCAG ATTATCAATC TGTTTGGATT TAATTTATTC ATGATACTCG 18637 .......... .......... .......... .......... .......... .......... 297 TGCGCTTTTC TTTGAGAGAG AACGAGTTTG TTGAGACCTG GAGTTCGGCA TTTTCTTTTT 18577 .......... .......... .......... .......... .......... .......... 297 TGTTTATTTG GAGAACTTGT TGTGGTCATG TGCCCTCTTG ATTTTTCCTG ATCGTTTTTT 18517 .......... .......... .......... .......... .......... .......... 297 ATAGGTTTTA CAAAGCGGCG TTCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT 18457 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTTTTA CAAAGCGGCG TTCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT 353 TGTATTCGAC CGTGTTTTTG TGGATGTGAA GGTATTCTTC TGCCGTGTTG ATCTTTCAAA 18397 |||||||||| |||||||||| |||||||||| | TGTATTCGAC CGTGTTTTTG TGGATGTGAA G......... .......... .......... 384 TTCATGCTAG AAGTTTCCCC TATATCTTTG TTTCTCGTTA CTTCATCTAA GCACACATGT 18337 .......... .......... .......... .......... .......... .......... 384 ATTCTATCAA GTTGTTAGAA TGTAAAATTG TAAAATGTAG CAATGCTCTT ATTTCAGGAT 18277 ||| .......... .......... .......... .......... .......... .......GAT 387 CCTTTTGAAT TCTCGCCGTA TCATAAGGCC ATTCGTGAAC CTTTTGACTA TTACAAGTTT 18217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTGAAT TCTCGCCGTA TCATAAGGCC ATTCGTGAAC CTTTTGACTA TTACAAGTTT 447 GGTCAAAATT ATATCCGCCA GCTAGTTGAT TTCA 18183 |||||||||| |||||||||| |||||||||| |||| GGTCAAAATT ATATCCGCCA GCTAGTTGAT TTCA 481 hqPGS_C08HBa0320P23.1-_SGN-E265448+ (23556 23359,19640 19543,18512 18426,18279 18183) ******************************************************************************** EST sequence 148 +strand 693 n (File: SGN-E546512+) 1 AAAGCACGTG CTCCCGTTCC TGATAAAACA CTCTCTCTCC CTCGCAACAC ACGCACATAT 61 TCATTTCACT CCTCACTTTC TTTCTCTCTC TAAACCTCTC CATTCTGTGG TGGTGATGTC 121 GATCCTCTCA GCGGCTTCGT CTTCTTCCTC CTTCATGCTT TCTTCCGCTT CGTCTTCTTC 181 TGCACGCATT CCGAGGCCGT TATCTTCATT TTCAACTTGT GAACCAGTAG TAGTAACAAC 241 TGTTTCTTCT GCAGCAACTT CGACGCTATT TCCGATTTCC TGTTTCGGTG TGAAATCGAG 301 GACGGTTGGG ATTCGGAAGC TACGGTGTGC CGTTTTTTGT GCTTCGAATG TACGTGGAAT 361 GGCAGAAATG ATTGAAGATG CCATGACAGT TTCTGCTTCT GAGAGTCATG AGCTTCCGCA 421 GTCCCGAGAC TTCCTTGACG CACGCACTGG AGAAGACTTG CTATCTGCTG TTCGAAAAGC 481 TGTGGAAGAT GAAAAACTGC CACTGAATGT TGCTGAAGGA ATGGAGGAGT TGTATCAGAA 541 CTATCAGAAT GCAGTTTTAC AAAGCGGAGT CCCCAAAGCA GATGAGGCCA TTTTGTATAA 601 CATGGCTCTT GTATTCGATC GTGTTTTTGT GGATGTGAAG GATCCTTTTG AATTCTCGCC 661 GTATCATAAG GCCATTCGTG AACCTTTTGA CTA Predicted gene structure (within gDNA segment 24560 to 17617): Exon 1 23832 23359 ( 474 n); cDNA 1 455 ( 455 n); score: 0.918 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 456 553 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 0.96) Exon 3 18512 18426 ( 87 n); cDNA 554 640 ( 87 n); score: 0.966 Intron 3 18425 18280 ( 146 n); Pd: 0.900 (s: 0.98), Pa: 0.983 (s: 1.00) Exon 4 18279 18227 ( 53 n); cDNA 641 693 ( 53 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E546512+ 0.941 712 1.027 C PGS_C08HBa0320P23.1-_SGN-E546512+ (23832 23359,19640 19543,18512 18426,18279 18227) Alignment (genomic DNA sequence = upper lines): AAAGCACGTG CT--CGTTCC TGATAAAACA CTCTCTCTCC CTCAC-A-AC ACGCATATAT 23777 |||||||||| || |||||| |||||||||| |||||||||| ||| | | || ||||| |||| AAAGCACGTG CTCCCGTTCC TGATAAAACA CTCTCTCTCC CTCGCAACAC ACGCACATAT 60 TCATTTCACT CCTCACTTTT TTTCTCGACC CTTTCTCTCT CTAAACCTCT CCATTCTGTG 23717 |||||||||| |||||| || | |||||||||| |||||||||| |||||||||| TCATTTCACT CCTCAC---- -TT-T----- CTTTCTCTCT CTAAACCTCT CCATTCTGTG 109 GTGGTGATGT TGATCCTCTC AGCGGCTTCG TCTTCTTCTT CTTCTTCTTC CTCCTTCATG 23657 |||||||||| ||||||||| |||||||||| |||||||| | || | | | | ||| GTGGTGATGT CGATCCTCTC AGCGGCTTCG TCTTCTTC-- C-TC--C-T- -T-C---ATG 157 CTTTCTTCCG CTTCGTCTTC TTCTGCACGC ATTCCGAGGC CGTTATCTTC ATTTTCAACT 23597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTCCG CTTCGTCTTC TTCTGCACGC ATTCCGAGGC CGTTATCTTC ATTTTCAACT 217 TGTGTACCAG TAGTAGTAAC AACTGTTTCT TCTGCAGCAA CTTCGACGCT ATTCCCGATT 23537 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TGTGAACCAG TAGTAGTAAC AACTGTTTCT TCTGCAGCAA CTTCGACGCT ATTTCCGATT 277 TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA AGCTACGGTG TGCCGTTTTT 23477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA AGCTACGGTG TGCCGTTTTT 337 TGTGCTTCGA AGGTACGTGG AATGGCAGAA ATGATTGAAG ATGCCATGAC AGTTTCTGCT 23417 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCTTCGA ATGTACGTGG AATGGCAGAA ATGATTGAAG ATGCCATGAC AGTTTCTGCT 397 TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG ACGCACGCAC TGGAGAAGGT 23357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG ACGCACGCAC TGGAGAAG.. 455 TTATCTCTAG CTATTATTAC TTTTTCTTTA ATTTGAAATA TCTTGTGCAT TTTTTGCTTT 23297 .......... .......... .......... .......... .......... .......... 455 CTATTGCTAC TTTCGCTTTT TTCATTTTTG AATTTGAAGT ATCTTGTGCA TTTTGTGCTA 23237 .......... .......... .......... .......... .......... .......... 455 TTTTCGTGCG GTTTGTTACT CTTGTTCTCT GTTGGAATAT CTTGTGCTAT TTCGGTGGGG 23177 .......... .......... .......... .......... .......... .......... 455 TTTAACATTT TGTGCGTATT ATGCCAGAGA CTGTTGTACA CATTCACGCT ACAATGTTTG 23117 .......... .......... .......... .......... .......... .......... 455 TTTTCTTTCG AATGCATTGA ATTTCTCAAT ATTCTTCACA ATTAACAATG CTGAACATAT 23057 .......... .......... .......... .......... .......... .......... 455 GAGGCGCGTT ATTACATTTG CAGAAGTGCA TTTATTTTTT GTTAATTTGC CCTATGCTTG 22997 .......... .......... .......... .......... .......... .......... 455 TTGCTCTGAA GAAAATGTGT TGAGCCCATA GTTAAATTGA ACTAATATTG CATTTAGCAT 22937 .......... .......... .......... .......... .......... .......... 455 GGAGTTAACT GTGAATTTTG TCAAGTAATA ATTTCTTTGC CACATAAACT ATTGAACTCT 22877 .......... .......... .......... .......... .......... .......... 455 ATGTCCATGG TGAAATTAAA CATCGTTATC TAATGTTGTC TACTCTTTGG TTTTTCCTAT 22817 .......... .......... .......... .......... .......... .......... 455 AAGTCCTATC AAATAGACTT GTAGTACATC AGTTCCATTC TAGGAGATGA ATTGGTTGGT 22757 .......... .......... .......... .......... .......... .......... 455 TGCAATAGCA GTTTCAGTAG TGGTATTAAT GAAATTGGTG TTGGCATAAG GTTGCAATAA 22697 .......... .......... .......... .......... .......... .......... 455 GAGTACTTAT CTGTGCAAGC ATGCTTAACA GTTTAAACAT CAAGTCAATG AGTTCTTTTA 22637 .......... .......... .......... .......... .......... .......... 455 ACCTTGATGC ACCGGGTATA GTATGTTTTG ATCTTTCTAG TAATCTATGG TGATATCTAT 22577 .......... .......... .......... .......... .......... .......... 455 TAGGACGGAC TTACAGTAAG CTCAACGATT GTTTTATTTT TAACGGTGAA CTGGATGTAT 22517 .......... .......... .......... .......... .......... .......... 455 TGTCTATGAA GCACGTCAGT TGGCTTTGTT GGGTCTAACT TTATAAGGGA CTTCTCGAAT 22457 .......... .......... .......... .......... .......... .......... 455 GGATAGTTAG CAGAACTACA CTTGAGGAAT GGTGCTACTA TAATGTAACA CCAATCCATC 22397 .......... .......... .......... .......... .......... .......... 455 TTGATGGAAG TTCTCGTTAA CCTGTGGATG GTGAAGGACT CGACAAATTT ATAGTGGATG 22337 .......... .......... .......... .......... .......... .......... 455 GGATGATGGG AATGATATCA ATTGAAGAGT AAGGTGAAAT GATTAGGAGG TGGAAGATCT 22277 .......... .......... .......... .......... .......... .......... 455 TGTTATGAAC ACCAAATCAA ACAGGCAGAC AAGCAACAGT GGATTGTTAA AGAGAAATAA 22217 .......... .......... .......... .......... .......... .......... 455 GACGCTTATT GGTTTCTATT CACTTTCTGC TTTCTCTTTT GCCCCCCATT TGGTGTGAAG 22157 .......... .......... .......... .......... .......... .......... 455 GATTTAATTG CTGTGAGGTA GAATCTATAG ACTAGTTTGC ATTCATGGAG ATTCTGTAAC 22097 .......... .......... .......... .......... .......... .......... 455 TATTCCAAAG AGATGGGAAG TTCGAGACAA TTGAGGTTTT TTCTTGAAAT TGGAAGCAAT 22037 .......... .......... .......... .......... .......... .......... 455 TACTAATTCA TGGTAGGACA TGTACTGATG TACATAGTAA AAACTTCATT CTCGAATTCT 21977 .......... .......... .......... .......... .......... .......... 455 CTGAGAACTT ATGTTGATAA TTTTTTAGCA GTTGGTTAGG CAACAATTAT TTTTCATAGA 21917 .......... .......... .......... .......... .......... .......... 455 AGTACTCTTT TGTTTTGTAC AACAAGCTTT CTCTAGACTG TGTTTCATAT TTGACATTTA 21857 .......... .......... .......... .......... .......... .......... 455 TTATGGACAC GTGAAGTTTT GATGGTTGAT TCTGGAATCA CCAATTTGCA TATTCATATT 21797 .......... .......... .......... .......... .......... .......... 455 TGGGACATTG AAGTCACCAA TTAAGACAAA AGGATCAAAT TTTGACATTT TGTGGTAGTA 21737 .......... .......... .......... .......... .......... .......... 455 TCTCGTTTTT AGCTTTCTTT ACAAAATTGT ATTGCTATAC AGTATCTCTT GCTCCCTGTC 21677 .......... .......... .......... .......... .......... .......... 455 TTTACAGTCA CCATTCAATC TCTGCCTCCC TTCATTTGAC TGCTTTTTTG TCTACCGCTA 21617 .......... .......... .......... .......... .......... .......... 455 TGCATGCGTA CTCCATTCTA TTACTGATGG TTGGTGATGT ATAGTTGGTT CCTTCTCTGG 21557 .......... .......... .......... .......... .......... .......... 455 ACATACACTA GGTTATTATG GTAACTTTAG CTTGGTTAAG TAATGCTTGG CAGTTTCTGC 21497 .......... .......... .......... .......... .......... .......... 455 ATTTTTTTTA AATGTATAGA TCTCCTCTTG ATCGACAACA AAGTCATTAC TTCGTATGAA 21437 .......... .......... .......... .......... .......... .......... 455 GCATTCGTGG ATCTTAGTTT CAAGCTAGCT TACACTTCAT TTTGTCGTAT CTTAGGATCT 21377 .......... .......... .......... .......... .......... .......... 455 TAGTTTCAAG CTAGCTTATA CTTCATTTTG TCGTATCTTA CAAGTCTCAG AACCTATGCA 21317 .......... .......... .......... .......... .......... .......... 455 GGTATTGTAA AAAACATGAC CTAGTTGGAT CTTTTTTCCG ATAACGCGTC ACCTAGTTGG 21257 .......... .......... .......... .......... .......... .......... 455 ATCTTGACTG ACATAACACA CACTCATACT ATGTTTGCAC TTTGAATGTG GTTTCTTATT 21197 .......... .......... .......... .......... .......... .......... 455 CATTTGAGAA ACAGAAACAA ATACGATGCT GAAGACTTAT GTGGTTTGTA TGCTATTCTG 21137 .......... .......... .......... .......... .......... .......... 455 ATAGATTTTC GTTTCAGTAA GTAGTTTAGA ATGTGGATTG GAAGCTTAGT TTTCTTTCTG 21077 .......... .......... .......... .......... .......... .......... 455 ATTTTGGTCT TCAACTCCTT TTGGATCTTC CTTATTGCTT TCTGGGGGAT TTCGATTTTC 21017 .......... .......... .......... .......... .......... .......... 455 CTGGTAATTG TCATGATGTC GTAATCATAT ACTATCTTAA TACACGTAAG TGTGCCACAG 20957 .......... .......... .......... .......... .......... .......... 455 TGGCATAAGG GGGATTACCT ATGTAAAGAA AATTACATAA AGCAGTTAAA GCACTATAAA 20897 .......... .......... .......... .......... .......... .......... 455 CTAGGTCATC TCCAATGATA TAATCTTATA TGGACTAGAA TAGGATTTTC AGCAAGAAGT 20837 .......... .......... .......... .......... .......... .......... 455 ACATTTAAAG AACCGTGACT TAGCATAAAT GTTAAAATTA TTGTACAAAT GCGGTCTTAA 20777 .......... .......... .......... .......... .......... .......... 455 GTTTCTTGTA AAACAGGATG AGGTATAAAG TTGTGATTCT CAGAATGCTT CCTATTAGAC 20717 .......... .......... .......... .......... .......... .......... 455 TTTAATGGAG CAGTTTTCCT TCTTTTCCAT GACTTGTTTT TCTTTTTTTG ATAACCACGG 20657 .......... .......... .......... .......... .......... .......... 455 TGTCTGAGCA CAAGTACCTG GTAACTGTGC CTATCAAGGA TTGGATATAT GGCAAAAAGT 20597 .......... .......... .......... .......... .......... .......... 455 CATTTTTTGA AAATTAAAAT ATGGCTGAAA ATCTGGAGTG CTTTTTTTCT GTCTTTTTGG 20537 .......... .......... .......... .......... .......... .......... 455 TAAACTTGGT ATAATCTTCT CCTTTCTTTT TTCTTTTCGG GCTGTGGCTT GTGTCTTGTG 20477 .......... .......... .......... .......... .......... .......... 455 CCTTGACAGA CATCTGAAGC AGTTGTCAAC CAGCACTGTC TGTCCTAGGG GCTGGTCATC 20417 .......... .......... .......... .......... .......... .......... 455 TACATGAAAT TTTACAAACT TGGTCTTTAA AACATGTCAT GTCTTAGAGG TTAGTCATCT 20357 .......... .......... .......... .......... .......... .......... 455 ACATGAAGTC TTACAAAGTA GGGTCTTAGA TACATATCAT CTTGTTGGCT TATATTTTTG 20297 .......... .......... .......... .......... .......... .......... 455 ACAGGTGATA TGGGATCAGG GATGAGTGCA GTATATGTTG CAAGGTATAT ATAAATATTT 20237 .......... .......... .......... .......... .......... .......... 455 GTCAAGGTAA TCAGATAGCT TGAGTCTTAT ACTTGTCTTA TACATGTTGT ATACTTGGTA 20177 .......... .......... .......... .......... .......... .......... 455 CTTCTTTGGG ATTTGAAGTA TCTCATAGGT TTTTTCGTGG TGTCTAGTTT CCTTTGAATA 20117 .......... .......... .......... .......... .......... .......... 455 CTTGTATGCT TCAACATTTA TGGGTGCATT ACCATATGGA ACTATTTATT GATATTAATT 20057 .......... .......... .......... .......... .......... .......... 455 ACCAATCAAC AAGAGAAACC GTGAACATCT GAGTAAGGGT TGGTATTGCA AGTTATAGTT 19997 .......... .......... .......... .......... .......... .......... 455 CAAGAATAGC GGAAGTGCTG CAATATTCTA GAAAACTTCG TCTTAAAAGG ATTTAGATAC 19937 .......... .......... .......... .......... .......... .......... 455 CTACTCAGAT GTTAGTGGCA GTTGCAAGTA TAAGACATTT GCTGCCGATT CTTATCTACT 19877 .......... .......... .......... .......... .......... .......... 455 CATCCTGCTA TCTTTTCAGT TGCAAGTATA AGACATTTGC TGCCGATTCT TATCTACTCA 19817 .......... .......... .......... .......... .......... .......... 455 TCCTGCTATC TTTCAGTGTC TTGATTCTAT TGTTTGCTAA ATTTAAACAT ACTGCTCAGC 19757 .......... .......... .......... .......... .......... .......... 455 AGATGATTCC CTTGTTCTTC TGCGGGGACT TTATTTTGGT AGATCTATTC TAATTGTTCT 19697 .......... .......... .......... .......... .......... .......... 455 GATTGAACCT GTGTCTCTCT TTCCCCCGTG CATTGGGTGT TCTATTTTCT GTGCAGACTT 19637 |||| .......... .......... .......... .......... .......... ......ACTT 459 GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG CCACTGAATG TTGCTGAAGG 19577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG CCACTGAATG TTGCTGAAGG 519 AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCAGTAAAA CACCTTTCTT TGAACTTGTG 19517 |||||||||| |||||||||| |||||||||| |||| AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCA...... .......... .......... 553 GTTAAATGTA CTCTTTTAAG TGTTGGGTCA TGGGTGCTTT GTTCGCTTAG ATATGTTTGC 19457 .......... .......... .......... .......... .......... .......... 553 TCATATGCAA GAGTCTTCTT GCATGAACAT ACTTTCTGGG TCATAACATG CTTTCTTAAG 19397 .......... .......... .......... .......... .......... .......... 553 TTACTAAAGA ACAGTATATA ATAGATTTAA GATGGTTGAG AATACAATTA AATAATAAAC 19337 .......... .......... .......... .......... .......... .......... 553 GTGTGCTCTC TCTAATGGCT TAGGCTTTTA GATGAGATGG TTACACACTT CAACAATGAT 19277 .......... .......... .......... .......... .......... .......... 553 GAATATTTTT TTTCTTCTAA TGTATTTGAT CATTTGAATT TAGTGGATGG TATTATGTAA 19217 .......... .......... .......... .......... .......... .......... 553 CTACACGCTG TTGGTATAAA AAAAGTTCAC GTTGTACCTA TAACAGTAGA TAAAACGCTG 19157 .......... .......... .......... .......... .......... .......... 553 GAGCTGGAAA AGCTAAAGTG GAGAGAGAAA TCACAATTTG GCATGCCATT ACTTTTTTGT 19097 .......... .......... .......... .......... .......... .......... 553 GACCAATTAT GTGGAAAGAC ATTATTACGG GGCCAAATGT TTTCAGAAAA TGACCTGAAG 19037 .......... .......... .......... .......... .......... .......... 553 ATAATAGGTT AAGCCCTTGT GAAGATTCTA AATGTAGTCT AACATTCAAC ACGTTCAGTA 18977 .......... .......... .......... .......... .......... .......... 553 TCATTTCTTC CTAGAGCATG GAAAATATGA TCTTGTGATG ACAAAACAAT AATAAAGATA 18917 .......... .......... .......... .......... .......... .......... 553 AATCTAGAGG AGGTGCTTAT ATTTGTATGT TTGTCTTTGC CTGATTTTTC CGCACGTGTC 18857 .......... .......... .......... .......... .......... .......... 553 TTTCTTGTTC CTACTTCTCT AGTATATCTT ATTTTCACTA ATAAATAATA ACTCGCCTCC 18797 .......... .......... .......... .......... .......... .......... 553 TCCTTCCCTC TTTCCTACTA AATTTTAGAG AATTTCATTT ATTTCATTCT TGGAAAGACT 18737 .......... .......... .......... .......... .......... .......... 553 ACTACTTTTG GACTTACCAT ATTTGGTGAA GTAATCCAAT CTATCTTTTA GACTTGTCAG 18677 .......... .......... .......... .......... .......... .......... 553 ATTATCAATC TGTTTGGATT TAATTTATTC ATGATACTCG TGCGCTTTTC TTTGAGAGAG 18617 .......... .......... .......... .......... .......... .......... 553 AACGAGTTTG TTGAGACCTG GAGTTCGGCA TTTTCTTTTT TGTTTATTTG GAGAACTTGT 18557 .......... .......... .......... .......... .......... .......... 553 TGTGGTCATG TGCCCTCTTG ATTTTTCCTG ATCGTTTTTT ATAGGTTTTA CAAAGCGGCG 18497 |||||| |||||||| | .......... .......... .......... .......... ....GTTTTA CAAAGCGGAG 569 TTCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT TGTATTCGAC CGTGTTTTTG 18437 | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TCCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT TGTATTCGAT CGTGTTTTTG 629 TGGATGTGAA GGTATTCTTC TGCCGTGTTG ATCTTTCAAA TTCATGCTAG AAGTTTCCCC 18377 |||||||||| | TGGATGTGAA G......... .......... .......... .......... .......... 640 TATATCTTTG TTTCTCGTTA CTTCATCTAA GCACACATGT ATTCTATCAA GTTGTTAGAA 18317 .......... .......... .......... .......... .......... .......... 640 TGTAAAATTG TAAAATGTAG CAATGCTCTT ATTTCAGGAT CCTTTTGAAT TCTCGCCGTA 18257 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT CCTTTTGAAT TCTCGCCGTA 663 TCATAAGGCC ATTCGTGAAC CTTTTGACTA 18227 |||||||||| |||||||||| |||||||||| TCATAAGGCC ATTCGTGAAC CTTTTGACTA 693 hqPGS_C08HBa0320P23.1-_SGN-E546512+ (23832 23359,19640 19543,18512 18426,18279 18227) ******************************************************************************** EST sequence 130 +strand 596 n (File: SGN-E266538+) 1 TTTTTTCTCG ACCCTTTCTC TCTCTAAACC TCTCCATTCT GTGGTGGTGA TGTTGATCCT 61 CTCAGCGGCT TCGTCTTCTT CTTCTTCTTC TTCCTCCTTC ATGCTTTCTT CCGCTTCGTC 121 TTCTTCTGCA CGCATTCCGA GGCCGTTATC TTCATTTTCA ACTTGTGTAC CAGTAGTAGT 181 AACAACTGTT TCTTCTGCAG CAACTTCGAC GCTATTCCCG ATTTCCTGTT TCGGTGTGAA 241 ATCGAGGACG GTTGGGATTC GGAAGCTACG GTGTGCCGTT TTTTGTGCTT CGAAGGTACG 301 TGGAATGGCA GAAATGATTG AAGATGCCAT GACAGTTTCT GCTTCTGAGA GTCATGAGCT 361 TCCGCAGTCC CGAGACTTCC TTGACGCACG CACTGGAGAA GACTTGCTAT CTGCTGTTCG 421 AAAAGCTGTG GAAGATGAAA AACTGCCACT GAATGTTGCT GAAGGAATGG AGGAGTTGTA 481 TCAGAACTAT CAGAATGCAG TTTTACAAAG CGGCGTTCCC AAAGCAGATG AGGCCATTTT 541 GTATAACATG GCTCTTGTAT TCGACCGCGT TTTTGTGGAT GTGAAGGATC CTTTTG Predicted gene structure (within gDNA segment 24359 to 17725): Exon 1 23759 23359 ( 401 n); cDNA 1 401 ( 401 n); score: 1.000 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 402 499 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 18512 18426 ( 87 n); cDNA 500 586 ( 87 n); score: 0.989 Intron 3 18425 18280 ( 146 n); Pd: 0.900 (s: 0.98), Pa: 0.983 (s: 0) Exon 4 18279 18270 ( 10 n); cDNA 587 596 ( 10 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E266538+ 0.998 596 1.000 C PGS_C08HBa0320P23.1-_SGN-E266538+ (23759 23359,19640 19543,18512 18426,18279 18270) Alignment (genomic DNA sequence = upper lines): TTTTTTCTCG ACCCTTTCTC TCTCTAAACC TCTCCATTCT GTGGTGGTGA TGTTGATCCT 23700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTCTCG ACCCTTTCTC TCTCTAAACC TCTCCATTCT GTGGTGGTGA TGTTGATCCT 60 CTCAGCGGCT TCGTCTTCTT CTTCTTCTTC TTCCTCCTTC ATGCTTTCTT CCGCTTCGTC 23640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGCGGCT TCGTCTTCTT CTTCTTCTTC TTCCTCCTTC ATGCTTTCTT CCGCTTCGTC 120 TTCTTCTGCA CGCATTCCGA GGCCGTTATC TTCATTTTCA ACTTGTGTAC CAGTAGTAGT 23580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTGCA CGCATTCCGA GGCCGTTATC TTCATTTTCA ACTTGTGTAC CAGTAGTAGT 180 AACAACTGTT TCTTCTGCAG CAACTTCGAC GCTATTCCCG ATTTCCTGTT TCGGTGTGAA 23520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACTGTT TCTTCTGCAG CAACTTCGAC GCTATTCCCG ATTTCCTGTT TCGGTGTGAA 240 ATCGAGGACG GTTGGGATTC GGAAGCTACG GTGTGCCGTT TTTTGTGCTT CGAAGGTACG 23460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGAGGACG GTTGGGATTC GGAAGCTACG GTGTGCCGTT TTTTGTGCTT CGAAGGTACG 300 TGGAATGGCA GAAATGATTG AAGATGCCAT GACAGTTTCT GCTTCTGAGA GTCATGAGCT 23400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATGGCA GAAATGATTG AAGATGCCAT GACAGTTTCT GCTTCTGAGA GTCATGAGCT 360 TCCGCAGTCC CGAGACTTCC TTGACGCACG CACTGGAGAA GGTTTATCTC TAGCTATTAT 23340 |||||||||| |||||||||| |||||||||| |||||||||| | TCCGCAGTCC CGAGACTTCC TTGACGCACG CACTGGAGAA G......... .......... 401 TACTTTTTCT TTAATTTGAA ATATCTTGTG CATTTTTTGC TTTCTATTGC TACTTTCGCT 23280 .......... .......... .......... .......... .......... .......... 401 TTTTTCATTT TTGAATTTGA AGTATCTTGT GCATTTTGTG CTATTTTCGT GCGGTTTGTT 23220 .......... .......... .......... .......... .......... .......... 401 ACTCTTGTTC TCTGTTGGAA TATCTTGTGC TATTTCGGTG GGGTTTAACA TTTTGTGCGT 23160 .......... .......... .......... .......... .......... .......... 401 ATTATGCCAG AGACTGTTGT ACACATTCAC GCTACAATGT TTGTTTTCTT TCGAATGCAT 23100 .......... .......... .......... .......... .......... .......... 401 TGAATTTCTC AATATTCTTC ACAATTAACA ATGCTGAACA TATGAGGCGC GTTATTACAT 23040 .......... .......... .......... .......... .......... .......... 401 TTGCAGAAGT GCATTTATTT TTTGTTAATT TGCCCTATGC TTGTTGCTCT GAAGAAAATG 22980 .......... .......... .......... .......... .......... .......... 401 TGTTGAGCCC ATAGTTAAAT TGAACTAATA TTGCATTTAG CATGGAGTTA ACTGTGAATT 22920 .......... .......... .......... .......... .......... .......... 401 TTGTCAAGTA ATAATTTCTT TGCCACATAA ACTATTGAAC TCTATGTCCA TGGTGAAATT 22860 .......... .......... .......... .......... .......... .......... 401 AAACATCGTT ATCTAATGTT GTCTACTCTT TGGTTTTTCC TATAAGTCCT ATCAAATAGA 22800 .......... .......... .......... .......... .......... .......... 401 CTTGTAGTAC ATCAGTTCCA TTCTAGGAGA TGAATTGGTT GGTTGCAATA GCAGTTTCAG 22740 .......... .......... .......... .......... .......... .......... 401 TAGTGGTATT AATGAAATTG GTGTTGGCAT AAGGTTGCAA TAAGAGTACT TATCTGTGCA 22680 .......... .......... .......... .......... .......... .......... 401 AGCATGCTTA ACAGTTTAAA CATCAAGTCA ATGAGTTCTT TTAACCTTGA TGCACCGGGT 22620 .......... .......... .......... .......... .......... .......... 401 ATAGTATGTT TTGATCTTTC TAGTAATCTA TGGTGATATC TATTAGGACG GACTTACAGT 22560 .......... .......... .......... .......... .......... .......... 401 AAGCTCAACG ATTGTTTTAT TTTTAACGGT GAACTGGATG TATTGTCTAT GAAGCACGTC 22500 .......... .......... .......... .......... .......... .......... 401 AGTTGGCTTT GTTGGGTCTA ACTTTATAAG GGACTTCTCG AATGGATAGT TAGCAGAACT 22440 .......... .......... .......... .......... .......... .......... 401 ACACTTGAGG AATGGTGCTA CTATAATGTA ACACCAATCC ATCTTGATGG AAGTTCTCGT 22380 .......... .......... .......... .......... .......... .......... 401 TAACCTGTGG ATGGTGAAGG ACTCGACAAA TTTATAGTGG ATGGGATGAT GGGAATGATA 22320 .......... .......... .......... .......... .......... .......... 401 TCAATTGAAG AGTAAGGTGA AATGATTAGG AGGTGGAAGA TCTTGTTATG AACACCAAAT 22260 .......... .......... .......... .......... .......... .......... 401 CAAACAGGCA GACAAGCAAC AGTGGATTGT TAAAGAGAAA TAAGACGCTT ATTGGTTTCT 22200 .......... .......... .......... .......... .......... .......... 401 ATTCACTTTC TGCTTTCTCT TTTGCCCCCC ATTTGGTGTG AAGGATTTAA TTGCTGTGAG 22140 .......... .......... .......... .......... .......... .......... 401 GTAGAATCTA TAGACTAGTT TGCATTCATG GAGATTCTGT AACTATTCCA AAGAGATGGG 22080 .......... .......... .......... .......... .......... .......... 401 AAGTTCGAGA CAATTGAGGT TTTTTCTTGA AATTGGAAGC AATTACTAAT TCATGGTAGG 22020 .......... .......... .......... .......... .......... .......... 401 ACATGTACTG ATGTACATAG TAAAAACTTC ATTCTCGAAT TCTCTGAGAA CTTATGTTGA 21960 .......... .......... .......... .......... .......... .......... 401 TAATTTTTTA GCAGTTGGTT AGGCAACAAT TATTTTTCAT AGAAGTACTC TTTTGTTTTG 21900 .......... .......... .......... .......... .......... .......... 401 TACAACAAGC TTTCTCTAGA CTGTGTTTCA TATTTGACAT TTATTATGGA CACGTGAAGT 21840 .......... .......... .......... .......... .......... .......... 401 TTTGATGGTT GATTCTGGAA TCACCAATTT GCATATTCAT ATTTGGGACA TTGAAGTCAC 21780 .......... .......... .......... .......... .......... .......... 401 CAATTAAGAC AAAAGGATCA AATTTTGACA TTTTGTGGTA GTATCTCGTT TTTAGCTTTC 21720 .......... .......... .......... .......... .......... .......... 401 TTTACAAAAT TGTATTGCTA TACAGTATCT CTTGCTCCCT GTCTTTACAG TCACCATTCA 21660 .......... .......... .......... .......... .......... .......... 401 ATCTCTGCCT CCCTTCATTT GACTGCTTTT TTGTCTACCG CTATGCATGC GTACTCCATT 21600 .......... .......... .......... .......... .......... .......... 401 CTATTACTGA TGGTTGGTGA TGTATAGTTG GTTCCTTCTC TGGACATACA CTAGGTTATT 21540 .......... .......... .......... .......... .......... .......... 401 ATGGTAACTT TAGCTTGGTT AAGTAATGCT TGGCAGTTTC TGCATTTTTT TTAAATGTAT 21480 .......... .......... .......... .......... .......... .......... 401 AGATCTCCTC TTGATCGACA ACAAAGTCAT TACTTCGTAT GAAGCATTCG TGGATCTTAG 21420 .......... .......... .......... .......... .......... .......... 401 TTTCAAGCTA GCTTACACTT CATTTTGTCG TATCTTAGGA TCTTAGTTTC AAGCTAGCTT 21360 .......... .......... .......... .......... .......... .......... 401 ATACTTCATT TTGTCGTATC TTACAAGTCT CAGAACCTAT GCAGGTATTG TAAAAAACAT 21300 .......... .......... .......... .......... .......... .......... 401 GACCTAGTTG GATCTTTTTT CCGATAACGC GTCACCTAGT TGGATCTTGA CTGACATAAC 21240 .......... .......... .......... .......... .......... .......... 401 ACACACTCAT ACTATGTTTG CACTTTGAAT GTGGTTTCTT ATTCATTTGA GAAACAGAAA 21180 .......... .......... .......... .......... .......... .......... 401 CAAATACGAT GCTGAAGACT TATGTGGTTT GTATGCTATT CTGATAGATT TTCGTTTCAG 21120 .......... .......... .......... .......... .......... .......... 401 TAAGTAGTTT AGAATGTGGA TTGGAAGCTT AGTTTTCTTT CTGATTTTGG TCTTCAACTC 21060 .......... .......... .......... .......... .......... .......... 401 CTTTTGGATC TTCCTTATTG CTTTCTGGGG GATTTCGATT TTCCTGGTAA TTGTCATGAT 21000 .......... .......... .......... .......... .......... .......... 401 GTCGTAATCA TATACTATCT TAATACACGT AAGTGTGCCA CAGTGGCATA AGGGGGATTA 20940 .......... .......... .......... .......... .......... .......... 401 CCTATGTAAA GAAAATTACA TAAAGCAGTT AAAGCACTAT AAACTAGGTC ATCTCCAATG 20880 .......... .......... .......... .......... .......... .......... 401 ATATAATCTT ATATGGACTA GAATAGGATT TTCAGCAAGA AGTACATTTA AAGAACCGTG 20820 .......... .......... .......... .......... .......... .......... 401 ACTTAGCATA AATGTTAAAA TTATTGTACA AATGCGGTCT TAAGTTTCTT GTAAAACAGG 20760 .......... .......... .......... .......... .......... .......... 401 ATGAGGTATA AAGTTGTGAT TCTCAGAATG CTTCCTATTA GACTTTAATG GAGCAGTTTT 20700 .......... .......... .......... .......... .......... .......... 401 CCTTCTTTTC CATGACTTGT TTTTCTTTTT TTGATAACCA CGGTGTCTGA GCACAAGTAC 20640 .......... .......... .......... .......... .......... .......... 401 CTGGTAACTG TGCCTATCAA GGATTGGATA TATGGCAAAA AGTCATTTTT TGAAAATTAA 20580 .......... .......... .......... .......... .......... .......... 401 AATATGGCTG AAAATCTGGA GTGCTTTTTT TCTGTCTTTT TGGTAAACTT GGTATAATCT 20520 .......... .......... .......... .......... .......... .......... 401 TCTCCTTTCT TTTTTCTTTT CGGGCTGTGG CTTGTGTCTT GTGCCTTGAC AGACATCTGA 20460 .......... .......... .......... .......... .......... .......... 401 AGCAGTTGTC AACCAGCACT GTCTGTCCTA GGGGCTGGTC ATCTACATGA AATTTTACAA 20400 .......... .......... .......... .......... .......... .......... 401 ACTTGGTCTT TAAAACATGT CATGTCTTAG AGGTTAGTCA TCTACATGAA GTCTTACAAA 20340 .......... .......... .......... .......... .......... .......... 401 GTAGGGTCTT AGATACATAT CATCTTGTTG GCTTATATTT TTGACAGGTG ATATGGGATC 20280 .......... .......... .......... .......... .......... .......... 401 AGGGATGAGT GCAGTATATG TTGCAAGGTA TATATAAATA TTTGTCAAGG TAATCAGATA 20220 .......... .......... .......... .......... .......... .......... 401 GCTTGAGTCT TATACTTGTC TTATACATGT TGTATACTTG GTACTTCTTT GGGATTTGAA 20160 .......... .......... .......... .......... .......... .......... 401 GTATCTCATA GGTTTTTTCG TGGTGTCTAG TTTCCTTTGA ATACTTGTAT GCTTCAACAT 20100 .......... .......... .......... .......... .......... .......... 401 TTATGGGTGC ATTACCATAT GGAACTATTT ATTGATATTA ATTACCAATC AACAAGAGAA 20040 .......... .......... .......... .......... .......... .......... 401 ACCGTGAACA TCTGAGTAAG GGTTGGTATT GCAAGTTATA GTTCAAGAAT AGCGGAAGTG 19980 .......... .......... .......... .......... .......... .......... 401 CTGCAATATT CTAGAAAACT TCGTCTTAAA AGGATTTAGA TACCTACTCA GATGTTAGTG 19920 .......... .......... .......... .......... .......... .......... 401 GCAGTTGCAA GTATAAGACA TTTGCTGCCG ATTCTTATCT ACTCATCCTG CTATCTTTTC 19860 .......... .......... .......... .......... .......... .......... 401 AGTTGCAAGT ATAAGACATT TGCTGCCGAT TCTTATCTAC TCATCCTGCT ATCTTTCAGT 19800 .......... .......... .......... .......... .......... .......... 401 GTCTTGATTC TATTGTTTGC TAAATTTAAA CATACTGCTC AGCAGATGAT TCCCTTGTTC 19740 .......... .......... .......... .......... .......... .......... 401 TTCTGCGGGG ACTTTATTTT GGTAGATCTA TTCTAATTGT TCTGATTGAA CCTGTGTCTC 19680 .......... .......... .......... .......... .......... .......... 401 TCTTTCCCCC GTGCATTGGG TGTTCTATTT TCTGTGCAGA CTTGCTATCT GCTGTTCGAA 19620 | |||||||||| |||||||||| .......... .......... .......... .........A CTTGCTATCT GCTGTTCGAA 422 AAGCTGTGGA AGATGAAAAA CTGCCACTGA ATGTTGCTGA AGGAATGGAG GAGTTGTATC 19560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGTGGA AGATGAAAAA CTGCCACTGA ATGTTGCTGA AGGAATGGAG GAGTTGTATC 482 AGAACTATCA GAATGCAGTA AAACACCTTT CTTTGAACTT GTGGTTAAAT GTACTCTTTT 19500 |||||||||| ||||||| AGAACTATCA GAATGCA... .......... .......... .......... .......... 499 AAGTGTTGGG TCATGGGTGC TTTGTTCGCT TAGATATGTT TGCTCATATG CAAGAGTCTT 19440 .......... .......... .......... .......... .......... .......... 499 CTTGCATGAA CATACTTTCT GGGTCATAAC ATGCTTTCTT AAGTTACTAA AGAACAGTAT 19380 .......... .......... .......... .......... .......... .......... 499 ATAATAGATT TAAGATGGTT GAGAATACAA TTAAATAATA AACGTGTGCT CTCTCTAATG 19320 .......... .......... .......... .......... .......... .......... 499 GCTTAGGCTT TTAGATGAGA TGGTTACACA CTTCAACAAT GATGAATATT TTTTTTCTTC 19260 .......... .......... .......... .......... .......... .......... 499 TAATGTATTT GATCATTTGA ATTTAGTGGA TGGTATTATG TAACTACACG CTGTTGGTAT 19200 .......... .......... .......... .......... .......... .......... 499 AAAAAAAGTT CACGTTGTAC CTATAACAGT AGATAAAACG CTGGAGCTGG AAAAGCTAAA 19140 .......... .......... .......... .......... .......... .......... 499 GTGGAGAGAG AAATCACAAT TTGGCATGCC ATTACTTTTT TGTGACCAAT TATGTGGAAA 19080 .......... .......... .......... .......... .......... .......... 499 GACATTATTA CGGGGCCAAA TGTTTTCAGA AAATGACCTG AAGATAATAG GTTAAGCCCT 19020 .......... .......... .......... .......... .......... .......... 499 TGTGAAGATT CTAAATGTAG TCTAACATTC AACACGTTCA GTATCATTTC TTCCTAGAGC 18960 .......... .......... .......... .......... .......... .......... 499 ATGGAAAATA TGATCTTGTG ATGACAAAAC AATAATAAAG ATAAATCTAG AGGAGGTGCT 18900 .......... .......... .......... .......... .......... .......... 499 TATATTTGTA TGTTTGTCTT TGCCTGATTT TTCCGCACGT GTCTTTCTTG TTCCTACTTC 18840 .......... .......... .......... .......... .......... .......... 499 TCTAGTATAT CTTATTTTCA CTAATAAATA ATAACTCGCC TCCTCCTTCC CTCTTTCCTA 18780 .......... .......... .......... .......... .......... .......... 499 CTAAATTTTA GAGAATTTCA TTTATTTCAT TCTTGGAAAG ACTACTACTT TTGGACTTAC 18720 .......... .......... .......... .......... .......... .......... 499 CATATTTGGT GAAGTAATCC AATCTATCTT TTAGACTTGT CAGATTATCA ATCTGTTTGG 18660 .......... .......... .......... .......... .......... .......... 499 ATTTAATTTA TTCATGATAC TCGTGCGCTT TTCTTTGAGA GAGAACGAGT TTGTTGAGAC 18600 .......... .......... .......... .......... .......... .......... 499 CTGGAGTTCG GCATTTTCTT TTTTGTTTAT TTGGAGAACT TGTTGTGGTC ATGTGCCCTC 18540 .......... .......... .......... .......... .......... .......... 499 TTGATTTTTC CTGATCGTTT TTTATAGGTT TTACAAAGCG GCGTTCCCAA AGCAGATGAG 18480 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT TTACAAAGCG GCGTTCCCAA AGCAGATGAG 532 GCCATTTTGT ATAACATGGC TCTTGTATTC GACCGTGTTT TTGTGGATGT GAAGGTATTC 18420 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||| GCCATTTTGT ATAACATGGC TCTTGTATTC GACCGCGTTT TTGTGGATGT GAAG...... 586 TTCTGCCGTG TTGATCTTTC AAATTCATGC TAGAAGTTTC CCCTATATCT TTGTTTCTCG 18360 .......... .......... .......... .......... .......... .......... 586 TTACTTCATC TAAGCACACA TGTATTCTAT CAAGTTGTTA GAATGTAAAA TTGTAAAATG 18300 .......... .......... .......... .......... .......... .......... 586 TAGCAATGCT CTTATTTCAG GATCCTTTTG 18270 |||||||||| .......... .......... GATCCTTTTG 596 hqPGS_C08HBa0320P23.1-_SGN-E266538+ (23759 23359,19640 19543,18512 18426,18279 18270) ******************************************************************************** EST sequence 136 +strand 344 n (File: SGN-E265247+) 1 TTCGACGCTA TTCCCGATGG GCTGTTTCGG TGTGAAATGG AGGACGGTTG GGATTCGGAA 61 GCTACGGTGT GCCGTTTTTT GTGCTTCGAA GGTACGTGGA ATGGCAGAAA TGATTGAAGA 121 TGCCATGACA GTTTCTGCTT CTGAGAGTCA TGAGCTTTCG CAGTCCCGAG ACTTCCTTGA 181 CGCACGCACT GGAGAAGACT TGCTATCTGC TGTTCGAAAA GCTGTGGAAG ATGAAAAACT 241 GCCACTGAAT GTTGCTGAAG GAATGGAGGA GTTGTATCAG AACTATCAGA ATGCAGTTTT 301 ACAAAGCGGC GTTCCCAAAG CAGATGAGGC CATTTTGTAT AACA Predicted gene structure (within gDNA segment 24155 to 17854): Exon 1 23555 23359 ( 197 n); cDNA 1 197 ( 197 n); score: 0.975 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 0.98), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 198 295 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 18512 18464 ( 49 n); cDNA 296 344 ( 49 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E265247+ 0.983 344 1.000 C PGS_C08HBa0320P23.1-_SGN-E265247+ (23555 23359,19640 19543,18512 18464) Alignment (genomic DNA sequence = upper lines): TTCGACGCTA TTCCCGATTT CCTGTTTCGG TGTGAAATCG AGGACGGTTG GGATTCGGAA 23496 |||||||||| |||||||| ||||||||| |||||||| | |||||||||| |||||||||| TTCGACGCTA TTCCCGATGG GCTGTTTCGG TGTGAAATGG AGGACGGTTG GGATTCGGAA 60 GCTACGGTGT GCCGTTTTTT GTGCTTCGAA GGTACGTGGA ATGGCAGAAA TGATTGAAGA 23436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACGGTGT GCCGTTTTTT GTGCTTCGAA GGTACGTGGA ATGGCAGAAA TGATTGAAGA 120 TGCCATGACA GTTTCTGCTT CTGAGAGTCA TGAGCTTCCG CAGTCCCGAG ACTTCCTTGA 23376 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TGCCATGACA GTTTCTGCTT CTGAGAGTCA TGAGCTTTCG CAGTCCCGAG ACTTCCTTGA 180 CGCACGCACT GGAGAAGGTT TATCTCTAGC TATTATTACT TTTTCTTTAA TTTGAAATAT 23316 |||||||||| ||||||| CGCACGCACT GGAGAAG... .......... .......... .......... .......... 197 CTTGTGCATT TTTTGCTTTC TATTGCTACT TTCGCTTTTT TCATTTTTGA ATTTGAAGTA 23256 .......... .......... .......... .......... .......... .......... 197 TCTTGTGCAT TTTGTGCTAT TTTCGTGCGG TTTGTTACTC TTGTTCTCTG TTGGAATATC 23196 .......... .......... .......... .......... .......... .......... 197 TTGTGCTATT TCGGTGGGGT TTAACATTTT GTGCGTATTA TGCCAGAGAC TGTTGTACAC 23136 .......... .......... .......... .......... .......... .......... 197 ATTCACGCTA CAATGTTTGT TTTCTTTCGA ATGCATTGAA TTTCTCAATA TTCTTCACAA 23076 .......... .......... .......... .......... .......... .......... 197 TTAACAATGC TGAACATATG AGGCGCGTTA TTACATTTGC AGAAGTGCAT TTATTTTTTG 23016 .......... .......... .......... .......... .......... .......... 197 TTAATTTGCC CTATGCTTGT TGCTCTGAAG AAAATGTGTT GAGCCCATAG TTAAATTGAA 22956 .......... .......... .......... .......... .......... .......... 197 CTAATATTGC ATTTAGCATG GAGTTAACTG TGAATTTTGT CAAGTAATAA TTTCTTTGCC 22896 .......... .......... .......... .......... .......... .......... 197 ACATAAACTA TTGAACTCTA TGTCCATGGT GAAATTAAAC ATCGTTATCT AATGTTGTCT 22836 .......... .......... .......... .......... .......... .......... 197 ACTCTTTGGT TTTTCCTATA AGTCCTATCA AATAGACTTG TAGTACATCA GTTCCATTCT 22776 .......... .......... .......... .......... .......... .......... 197 AGGAGATGAA TTGGTTGGTT GCAATAGCAG TTTCAGTAGT GGTATTAATG AAATTGGTGT 22716 .......... .......... .......... .......... .......... .......... 197 TGGCATAAGG TTGCAATAAG AGTACTTATC TGTGCAAGCA TGCTTAACAG TTTAAACATC 22656 .......... .......... .......... .......... .......... .......... 197 AAGTCAATGA GTTCTTTTAA CCTTGATGCA CCGGGTATAG TATGTTTTGA TCTTTCTAGT 22596 .......... .......... .......... .......... .......... .......... 197 AATCTATGGT GATATCTATT AGGACGGACT TACAGTAAGC TCAACGATTG TTTTATTTTT 22536 .......... .......... .......... .......... .......... .......... 197 AACGGTGAAC TGGATGTATT GTCTATGAAG CACGTCAGTT GGCTTTGTTG GGTCTAACTT 22476 .......... .......... .......... .......... .......... .......... 197 TATAAGGGAC TTCTCGAATG GATAGTTAGC AGAACTACAC TTGAGGAATG GTGCTACTAT 22416 .......... .......... .......... .......... .......... .......... 197 AATGTAACAC CAATCCATCT TGATGGAAGT TCTCGTTAAC CTGTGGATGG TGAAGGACTC 22356 .......... .......... .......... .......... .......... .......... 197 GACAAATTTA TAGTGGATGG GATGATGGGA ATGATATCAA TTGAAGAGTA AGGTGAAATG 22296 .......... .......... .......... .......... .......... .......... 197 ATTAGGAGGT GGAAGATCTT GTTATGAACA CCAAATCAAA CAGGCAGACA AGCAACAGTG 22236 .......... .......... .......... .......... .......... .......... 197 GATTGTTAAA GAGAAATAAG ACGCTTATTG GTTTCTATTC ACTTTCTGCT TTCTCTTTTG 22176 .......... .......... .......... .......... .......... .......... 197 CCCCCCATTT GGTGTGAAGG ATTTAATTGC TGTGAGGTAG AATCTATAGA CTAGTTTGCA 22116 .......... .......... .......... .......... .......... .......... 197 TTCATGGAGA TTCTGTAACT ATTCCAAAGA GATGGGAAGT TCGAGACAAT TGAGGTTTTT 22056 .......... .......... .......... .......... .......... .......... 197 TCTTGAAATT GGAAGCAATT ACTAATTCAT GGTAGGACAT GTACTGATGT ACATAGTAAA 21996 .......... .......... .......... .......... .......... .......... 197 AACTTCATTC TCGAATTCTC TGAGAACTTA TGTTGATAAT TTTTTAGCAG TTGGTTAGGC 21936 .......... .......... .......... .......... .......... .......... 197 AACAATTATT TTTCATAGAA GTACTCTTTT GTTTTGTACA ACAAGCTTTC TCTAGACTGT 21876 .......... .......... .......... .......... .......... .......... 197 GTTTCATATT TGACATTTAT TATGGACACG TGAAGTTTTG ATGGTTGATT CTGGAATCAC 21816 .......... .......... .......... .......... .......... .......... 197 CAATTTGCAT ATTCATATTT GGGACATTGA AGTCACCAAT TAAGACAAAA GGATCAAATT 21756 .......... .......... .......... .......... .......... .......... 197 TTGACATTTT GTGGTAGTAT CTCGTTTTTA GCTTTCTTTA CAAAATTGTA TTGCTATACA 21696 .......... .......... .......... .......... .......... .......... 197 GTATCTCTTG CTCCCTGTCT TTACAGTCAC CATTCAATCT CTGCCTCCCT TCATTTGACT 21636 .......... .......... .......... .......... .......... .......... 197 GCTTTTTTGT CTACCGCTAT GCATGCGTAC TCCATTCTAT TACTGATGGT TGGTGATGTA 21576 .......... .......... .......... .......... .......... .......... 197 TAGTTGGTTC CTTCTCTGGA CATACACTAG GTTATTATGG TAACTTTAGC TTGGTTAAGT 21516 .......... .......... .......... .......... .......... .......... 197 AATGCTTGGC AGTTTCTGCA TTTTTTTTAA ATGTATAGAT CTCCTCTTGA TCGACAACAA 21456 .......... .......... .......... .......... .......... .......... 197 AGTCATTACT TCGTATGAAG CATTCGTGGA TCTTAGTTTC AAGCTAGCTT ACACTTCATT 21396 .......... .......... .......... .......... .......... .......... 197 TTGTCGTATC TTAGGATCTT AGTTTCAAGC TAGCTTATAC TTCATTTTGT CGTATCTTAC 21336 .......... .......... .......... .......... .......... .......... 197 AAGTCTCAGA ACCTATGCAG GTATTGTAAA AAACATGACC TAGTTGGATC TTTTTTCCGA 21276 .......... .......... .......... .......... .......... .......... 197 TAACGCGTCA CCTAGTTGGA TCTTGACTGA CATAACACAC ACTCATACTA TGTTTGCACT 21216 .......... .......... .......... .......... .......... .......... 197 TTGAATGTGG TTTCTTATTC ATTTGAGAAA CAGAAACAAA TACGATGCTG AAGACTTATG 21156 .......... .......... .......... .......... .......... .......... 197 TGGTTTGTAT GCTATTCTGA TAGATTTTCG TTTCAGTAAG TAGTTTAGAA TGTGGATTGG 21096 .......... .......... .......... .......... .......... .......... 197 AAGCTTAGTT TTCTTTCTGA TTTTGGTCTT CAACTCCTTT TGGATCTTCC TTATTGCTTT 21036 .......... .......... .......... .......... .......... .......... 197 CTGGGGGATT TCGATTTTCC TGGTAATTGT CATGATGTCG TAATCATATA CTATCTTAAT 20976 .......... .......... .......... .......... .......... .......... 197 ACACGTAAGT GTGCCACAGT GGCATAAGGG GGATTACCTA TGTAAAGAAA ATTACATAAA 20916 .......... .......... .......... .......... .......... .......... 197 GCAGTTAAAG CACTATAAAC TAGGTCATCT CCAATGATAT AATCTTATAT GGACTAGAAT 20856 .......... .......... .......... .......... .......... .......... 197 AGGATTTTCA GCAAGAAGTA CATTTAAAGA ACCGTGACTT AGCATAAATG TTAAAATTAT 20796 .......... .......... .......... .......... .......... .......... 197 TGTACAAATG CGGTCTTAAG TTTCTTGTAA AACAGGATGA GGTATAAAGT TGTGATTCTC 20736 .......... .......... .......... .......... .......... .......... 197 AGAATGCTTC CTATTAGACT TTAATGGAGC AGTTTTCCTT CTTTTCCATG ACTTGTTTTT 20676 .......... .......... .......... .......... .......... .......... 197 CTTTTTTTGA TAACCACGGT GTCTGAGCAC AAGTACCTGG TAACTGTGCC TATCAAGGAT 20616 .......... .......... .......... .......... .......... .......... 197 TGGATATATG GCAAAAAGTC ATTTTTTGAA AATTAAAATA TGGCTGAAAA TCTGGAGTGC 20556 .......... .......... .......... .......... .......... .......... 197 TTTTTTTCTG TCTTTTTGGT AAACTTGGTA TAATCTTCTC CTTTCTTTTT TCTTTTCGGG 20496 .......... .......... .......... .......... .......... .......... 197 CTGTGGCTTG TGTCTTGTGC CTTGACAGAC ATCTGAAGCA GTTGTCAACC AGCACTGTCT 20436 .......... .......... .......... .......... .......... .......... 197 GTCCTAGGGG CTGGTCATCT ACATGAAATT TTACAAACTT GGTCTTTAAA ACATGTCATG 20376 .......... .......... .......... .......... .......... .......... 197 TCTTAGAGGT TAGTCATCTA CATGAAGTCT TACAAAGTAG GGTCTTAGAT ACATATCATC 20316 .......... .......... .......... .......... .......... .......... 197 TTGTTGGCTT ATATTTTTGA CAGGTGATAT GGGATCAGGG ATGAGTGCAG TATATGTTGC 20256 .......... .......... .......... .......... .......... .......... 197 AAGGTATATA TAAATATTTG TCAAGGTAAT CAGATAGCTT GAGTCTTATA CTTGTCTTAT 20196 .......... .......... .......... .......... .......... .......... 197 ACATGTTGTA TACTTGGTAC TTCTTTGGGA TTTGAAGTAT CTCATAGGTT TTTTCGTGGT 20136 .......... .......... .......... .......... .......... .......... 197 GTCTAGTTTC CTTTGAATAC TTGTATGCTT CAACATTTAT GGGTGCATTA CCATATGGAA 20076 .......... .......... .......... .......... .......... .......... 197 CTATTTATTG ATATTAATTA CCAATCAACA AGAGAAACCG TGAACATCTG AGTAAGGGTT 20016 .......... .......... .......... .......... .......... .......... 197 GGTATTGCAA GTTATAGTTC AAGAATAGCG GAAGTGCTGC AATATTCTAG AAAACTTCGT 19956 .......... .......... .......... .......... .......... .......... 197 CTTAAAAGGA TTTAGATACC TACTCAGATG TTAGTGGCAG TTGCAAGTAT AAGACATTTG 19896 .......... .......... .......... .......... .......... .......... 197 CTGCCGATTC TTATCTACTC ATCCTGCTAT CTTTTCAGTT GCAAGTATAA GACATTTGCT 19836 .......... .......... .......... .......... .......... .......... 197 GCCGATTCTT ATCTACTCAT CCTGCTATCT TTCAGTGTCT TGATTCTATT GTTTGCTAAA 19776 .......... .......... .......... .......... .......... .......... 197 TTTAAACATA CTGCTCAGCA GATGATTCCC TTGTTCTTCT GCGGGGACTT TATTTTGGTA 19716 .......... .......... .......... .......... .......... .......... 197 GATCTATTCT AATTGTTCTG ATTGAACCTG TGTCTCTCTT TCCCCCGTGC ATTGGGTGTT 19656 .......... .......... .......... .......... .......... .......... 197 CTATTTTCTG TGCAGACTTG CTATCTGCTG TTCGAAAAGC TGTGGAAGAT GAAAAACTGC 19596 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....ACTTG CTATCTGCTG TTCGAAAAGC TGTGGAAGAT GAAAAACTGC 242 CACTGAATGT TGCTGAAGGA ATGGAGGAGT TGTATCAGAA CTATCAGAAT GCAGTAAAAC 19536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CACTGAATGT TGCTGAAGGA ATGGAGGAGT TGTATCAGAA CTATCAGAAT GCA....... 295 ACCTTTCTTT GAACTTGTGG TTAAATGTAC TCTTTTAAGT GTTGGGTCAT GGGTGCTTTG 19476 .......... .......... .......... .......... .......... .......... 295 TTCGCTTAGA TATGTTTGCT CATATGCAAG AGTCTTCTTG CATGAACATA CTTTCTGGGT 19416 .......... .......... .......... .......... .......... .......... 295 CATAACATGC TTTCTTAAGT TACTAAAGAA CAGTATATAA TAGATTTAAG ATGGTTGAGA 19356 .......... .......... .......... .......... .......... .......... 295 ATACAATTAA ATAATAAACG TGTGCTCTCT CTAATGGCTT AGGCTTTTAG ATGAGATGGT 19296 .......... .......... .......... .......... .......... .......... 295 TACACACTTC AACAATGATG AATATTTTTT TTCTTCTAAT GTATTTGATC ATTTGAATTT 19236 .......... .......... .......... .......... .......... .......... 295 AGTGGATGGT ATTATGTAAC TACACGCTGT TGGTATAAAA AAAGTTCACG TTGTACCTAT 19176 .......... .......... .......... .......... .......... .......... 295 AACAGTAGAT AAAACGCTGG AGCTGGAAAA GCTAAAGTGG AGAGAGAAAT CACAATTTGG 19116 .......... .......... .......... .......... .......... .......... 295 CATGCCATTA CTTTTTTGTG ACCAATTATG TGGAAAGACA TTATTACGGG GCCAAATGTT 19056 .......... .......... .......... .......... .......... .......... 295 TTCAGAAAAT GACCTGAAGA TAATAGGTTA AGCCCTTGTG AAGATTCTAA ATGTAGTCTA 18996 .......... .......... .......... .......... .......... .......... 295 ACATTCAACA CGTTCAGTAT CATTTCTTCC TAGAGCATGG AAAATATGAT CTTGTGATGA 18936 .......... .......... .......... .......... .......... .......... 295 CAAAACAATA ATAAAGATAA ATCTAGAGGA GGTGCTTATA TTTGTATGTT TGTCTTTGCC 18876 .......... .......... .......... .......... .......... .......... 295 TGATTTTTCC GCACGTGTCT TTCTTGTTCC TACTTCTCTA GTATATCTTA TTTTCACTAA 18816 .......... .......... .......... .......... .......... .......... 295 TAAATAATAA CTCGCCTCCT CCTTCCCTCT TTCCTACTAA ATTTTAGAGA ATTTCATTTA 18756 .......... .......... .......... .......... .......... .......... 295 TTTCATTCTT GGAAAGACTA CTACTTTTGG ACTTACCATA TTTGGTGAAG TAATCCAATC 18696 .......... .......... .......... .......... .......... .......... 295 TATCTTTTAG ACTTGTCAGA TTATCAATCT GTTTGGATTT AATTTATTCA TGATACTCGT 18636 .......... .......... .......... .......... .......... .......... 295 GCGCTTTTCT TTGAGAGAGA ACGAGTTTGT TGAGACCTGG AGTTCGGCAT TTTCTTTTTT 18576 .......... .......... .......... .......... .......... .......... 295 GTTTATTTGG AGAACTTGTT GTGGTCATGT GCCCTCTTGA TTTTTCCTGA TCGTTTTTTA 18516 .......... .......... .......... .......... .......... .......... 295 TAGGTTTTAC AAAGCGGCGT TCCCAAAGCA GATGAGGCCA TTTTGTATAA CA 18464 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ...GTTTTAC AAAGCGGCGT TCCCAAAGCA GATGAGGCCA TTTTGTATAA CA 344 hqPGS_C08HBa0320P23.1-_SGN-E265247+ (23555 23359,19640 19543,18512 18464) ******************************************************************************** EST sequence 149 +strand 207 n (File: SGN-E330180+) 1 TTGATCCTCT CAGCGGCTTC GTCGTCTTCT TGTTCTTCTT CCTCCTTCAT GCTTTCTTCC 61 GCTTCGTCTT CTTCTGCACG CATTCCGAGG CCGTTATCTT CATTTTCAAC TTGTGTACCA 121 GTAGTAGTAA CAACTGTTTC TTCTGCAGCA ACTTCGACGC TATTCCCGAT TTCCTGTTTC 181 GGTGTGAAAT CGAAGACGGT TGGGATT Predicted gene structure (within gDNA segment 24307 to 22765): Exon 1 23707 23501 ( 207 n); cDNA 1 207 ( 207 n); score: 0.986 MATCH C08HBa0320P23.1- SGN-E330180+ 0.986 207 1.000 C PGS_C08HBa0320P23.1-_SGN-E330180+ (23707 23501) Alignment (genomic DNA sequence = upper lines): TTGATCCTCT CAGCGGCTTC GTCTTCTTCT TCTTCTTCTT CCTCCTTCAT GCTTTCTTCC 23648 |||||||||| |||||||||| ||| |||||| | |||||||| |||||||||| |||||||||| TTGATCCTCT CAGCGGCTTC GTCGTCTTCT TGTTCTTCTT CCTCCTTCAT GCTTTCTTCC 60 GCTTCGTCTT CTTCTGCACG CATTCCGAGG CCGTTATCTT CATTTTCAAC TTGTGTACCA 23588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCGTCTT CTTCTGCACG CATTCCGAGG CCGTTATCTT CATTTTCAAC TTGTGTACCA 120 GTAGTAGTAA CAACTGTTTC TTCTGCAGCA ACTTCGACGC TATTCCCGAT TTCCTGTTTC 23528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTAGTAA CAACTGTTTC TTCTGCAGCA ACTTCGACGC TATTCCCGAT TTCCTGTTTC 180 GGTGTGAAAT CGAGGACGGT TGGGATT 23501 |||||||||| ||| |||||| ||||||| GGTGTGAAAT CGAAGACGGT TGGGATT 207 hqPGS_C08HBa0320P23.1-_SGN-E330180+ (23707 23501) ******************************************************************************** EST sequence 94 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 26661 to 16957): Exon 1 25795 25760 ( 36 n); cDNA 70 104 ( 35 n); score: 0.611 Intron 1 25759 25429 ( 331 n); Pd: 0.448 (s: 0), Pa: 0.969 (s: 0) Exon 2 25428 25401 ( 28 n); cDNA 105 131 ( 27 n); score: 0.536 Intron 2 25400 24743 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.412 (s: 0.94) Exon 3 24742 24477 ( 266 n); cDNA 132 398 ( 267 n); score: 0.763 Intron 3 24476 23560 ( 917 n); Pd: 0.588 (s: 0.78), Pa: 0.996 (s: 0) Exon 4 23559 23542 ( 18 n); cDNA 399 417 ( 19 n); score: 0.528 Intron 4 23541 19388 (4154 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 5 19387 19337 ( 51 n); cDNA 418 467 ( 50 n); score: 0.686 Intron 5 19336 18987 ( 350 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 6 18986 18980 ( 7 n); cDNA 468 473 ( 6 n); score: 0.714 Intron 6 18979 18008 ( 972 n); Pd: 0.900 (s: 0), Pa: 0.915 (s: 0) Exon 7 18007 17989 ( 19 n); cDNA 474 491 ( 18 n); score: 0.684 PPA cDNA 12 1 MATCH C08HBa0320P23.1- SGN-E540411+ 0.751 425 0.495 C PGS_C08HBa0320P23.1-_SGN-E540411+ (25795 25760,25428 25401,24742 24477,23559 23542,19387 19337,18986 18980,18007 17989) Alignment (genomic DNA sequence = upper lines): CAACCGCTAC CTCTCTCTGG GACAATAAAT ATAAAGGTTT TGTTTTGCAA ATAAGGGTAA 25736 |||| | || || || | || |||| | | | | CAACATATGA CT-TCACTTG AACTATAATT AAAGAA.... .......... .......... 104 AATTGCACAT GGACTAAACA AAAATTAATG TCTATTCAAA TCTTCAAAGG CTTATTCTCC 25676 .......... .......... .......... .......... .......... .......... 104 TCTCATGTAT GTCCCACTCC ATATATTATT GCGTTAAAAG TATTTTCTTA ATATTTTGTT 25616 .......... .......... .......... .......... .......... .......... 104 TATAATTATG AGATATACCT TAAAGTATAG TTTAATGTAA GAAAGAATAT TCACACTTTA 25556 .......... .......... .......... .......... .......... .......... 104 TTTGCCCCAC TAACTCATGC GCGTGGAAGA AATTAATTTA AATATATTTT CATCTCTAGA 25496 .......... .......... .......... .......... .......... .......... 104 TATTTTTCTT AACGTGTGTT TGATTTTTTA AAAATATTTT AATACGTAAT TTAATAAAAT 25436 .......... .......... .......... .......... .......... .......... 104 ATTATAGAAA TAAGATTGAA TAGGCGGAAG TGGAGTTTGG TGTTGGTTGG AATGGTCGAG 25376 || ||| | || | || ||| | .......CAA TAA-AGGGAT AATGCACAAG TACCC..... .......... .......... 131 CGATGGGGTT TGGATGAGTT TGGTGGTGAT AGCGAACTTT TAATTTCAAT TTCGAAGTGT 25316 .......... .......... .......... .......... .......... .......... 131 TTTTTTTTTT TTTTTACATT TCCCTTAAAA AAATTAATAT TTTTATTTTT AAAGAATTAA 25256 .......... .......... .......... .......... .......... .......... 131 TTTTTCTAAA CTTTTTAACC CGTCAACATA AAAATAAAAA ATATTCTTGA AAATATTTCC 25196 .......... .......... .......... .......... .......... .......... 131 TATATAACAG ACACATAAAA GGATCCTTTG GTACGCATAC TAAATTATGT TGGTACTATA 25136 .......... .......... .......... .......... .......... .......... 131 AATTTCGAAC TTATTTATCC CCAATAAAAA ATGAGAAAAA TATCAAAATT GAATTATACG 25076 .......... .......... .......... .......... .......... .......... 131 TTCATACTTC ATGCCATTAA TTAAATACAA TATAAATTTT ATTTCATCCT TATTCTTAAA 25016 .......... .......... .......... .......... .......... .......... 131 ATACCCCCAT CTTATTCAAC CCCTCAATTG GAAATGAGTT TTACCATTCT TATATTCTAT 24956 .......... .......... .......... .......... .......... .......... 131 CATCATTTTT TTTCTTCACA AAAACAAAGT TTTAACAAAT GTCTTCCCTC ATCTCGTCGG 24896 .......... .......... .......... .......... .......... .......... 131 GACGTTATAT TTTCAAAAAT AAAAATAAAT TATATTTTTT TTCTTCAAAA AGTATTCAAG 24836 .......... .......... .......... .......... .......... .......... 131 TAAGAACAAA ATGAATTTTT CCATGCTAAA CTTATGGGAT TATTTTGTTG AAAACAACTT 24776 .......... .......... .......... .......... .......... .......... 131 ATACCGTCAT TCTTTTTTGG GATAATGTCA TAGTCTCAAC CTATGCCCGA AATCTCAGAG 24716 |||||| |||||||||| ||| ||||| .......... .......... .......... ...CCTCAAC CTATGCCCGA AATTCCAGAG 158 ACACACTTAT ACTATACTAA GGTCCTATTA -CCTCCTGAA CTTATTTTAT TAATAATTTT 24657 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| | ||||||| ACACACTTAT ACTATACTAA GGTCCTATTA CCCCCCTGAA CTTATTTTAT AAGTAATTTT 218 TTACCCCTTT TTAGCTTACG TGGCACTATC TTATGGACCC AACGATGATT GACTTTTTTT 24597 ||||||||| ||||| |||| |||||||| ||| | | | | | | CTACCCCTTT TTAGCCTACG TGGCACTAGT TTAAAAAAAA AGTCAACAAC CATTGGGCCC 278 TCGAACTAGT GCCACATATG CTAAAAAGGG GTAGAAAATT ACATATGAAA TAAGTTTA-G 24538 | | |||| ||||| || | ||||||| ||| |||||| | || ||| |||||| | | ACAAGATAGT GCCACGTAGG TCTAAAAGGG GTAAAAAATT A-TTAATAAA TAAGTTCAGG 337 GGGTAATAGG ACATTAGTAT AGTATAAGTG TTTCTATGAG ATTTCAGGCA TAAGTTGAGG 24478 |||||||| | | ||||||| ||||||||| | ||| |||| |||| | || || | | ||| GGGTAATAAG ATCTTAGTAT GGTATAAGTG TATCTCTGAG ATTTTGGACA TAGGCTAAGG 397 GGTACTTGAA TATTTTCTTT TTTTTTTCAA AAAAAAAGTT AATAATTATT ATAAGCCAAA 24418 | G......... .......... .......... .......... .......... .......... 398 TCATCCCACA CATACAATAA TTTATTTATC ATTTAGTAAG ATTAGGAGTA GAGTTAGGTG 24358 .......... .......... .......... .......... .......... .......... 398 AAGTTTCATG AGTTTGGACG AAATTATTAG TTAGTCTATA GACTCTATAT ATAAACTTGT 24298 .......... .......... .......... .......... .......... .......... 398 CATAACAAAA TTAATTCACA ATTAATAGTA AGGAAAGGGA GATAGAAATG TTTTTTACAC 24238 .......... .......... .......... .......... .......... .......... 398 TAGTGATTAT AGGTTCAAAT CGTTCTAAAA TTTAAAATTT TCCCATTTCT AGTTTTGATT 24178 .......... .......... .......... .......... .......... .......... 398 CCACCTTTGA GTGAAATAAT AATTTAAAAT TTTCATACTT CTAATTCTGA TTCCCCCTCT 24118 .......... .......... .......... .......... .......... .......... 398 AACTAAAATA AATAATTTTA AAACTGCTTA ATATTTCGAA CTAATACTTC CCTTTCATTG 24058 .......... .......... .......... .......... .......... .......... 398 GAGAGAAGTT ACTCAAAGGT TGGTCTAATA GGCTATTGCC ACTATTTCAA AAGAAGGGTG 23998 .......... .......... .......... .......... .......... .......... 398 TATAGTTGTT ACACGTGTCC AGATAAGACT AGCTTAGTTC CATATAAAAG CCAATGAAAT 23938 .......... .......... .......... .......... .......... .......... 398 AAATGAAGAA GTATTTTCAG ATAAATAACA AAAAAAAGAA AGAGAAGAAA AGAAAAACAC 23878 .......... .......... .......... .......... .......... .......... 398 TCAAATAACT GTATCACAAA ATTCACACAC ACAATTGGGT GATGGAAAGC ACGTGCTCGT 23818 .......... .......... .......... .......... .......... .......... 398 TCCTGATAAA ACACTCTCTC TCCCTCACAA CACGCATATA TTCATTTCAC TCCTCACTTT 23758 .......... .......... .......... .......... .......... .......... 398 TTTTCTCGAC CCTTTCTCTC TCTAAACCTC TCCATTCTGT GGTGGTGATG TTGATCCTCT 23698 .......... .......... .......... .......... .......... .......... 398 CAGCGGCTTC GTCTTCTTCT TCTTCTTCTT CCTCCTTCAT GCTTTCTTCC GCTTCGTCTT 23638 .......... .......... .......... .......... .......... .......... 398 CTTCTGCACG CATTCCGAGG CCGTTATCTT CATTTTCAAC TTGTGTACCA GTAGTAGTAA 23578 .......... .......... .......... .......... .......... .......... 398 CAACTGTTTC TTCTGCAG-C AACTTCGACG CTATTCCCGA TTTCCTGTTT CGGTGTGAAA 23519 |||| ||| ||| || .......... ........GG TACTTGGACA TTATCCC... .......... .......... 417 TCGAGGACGG TTGGGATTCG GAAGCTACGG TGTGCCGTTT TTTGTGCTTC GAAGGTACGT 23459 .......... .......... .......... .......... .......... .......... 417 GGAATGGCAG AAATGATTGA AGATGCCATG ACAGTTTCTG CTTCTGAGAG TCATGAGCTT 23399 .......... .......... .......... .......... .......... .......... 417 CCGCAGTCCC GAGACTTCCT TGACGCACGC ACTGGAGAAG GTTTATCTCT AGCTATTATT 23339 .......... .......... .......... .......... .......... .......... 417 ACTTTTTCTT TAATTTGAAA TATCTTGTGC ATTTTTTGCT TTCTATTGCT ACTTTCGCTT 23279 .......... .......... .......... .......... .......... .......... 417 TTTTCATTTT TGAATTTGAA GTATCTTGTG CATTTTGTGC TATTTTCGTG CGGTTTGTTA 23219 .......... .......... .......... .......... .......... .......... 417 CTCTTGTTCT CTGTTGGAAT ATCTTGTGCT ATTTCGGTGG GGTTTAACAT TTTGTGCGTA 23159 .......... .......... .......... .......... .......... .......... 417 TTATGCCAGA GACTGTTGTA CACATTCACG CTACAATGTT TGTTTTCTTT CGAATGCATT 23099 .......... .......... .......... .......... .......... .......... 417 GAATTTCTCA ATATTCTTCA CAATTAACAA TGCTGAACAT ATGAGGCGCG TTATTACATT 23039 .......... .......... .......... .......... .......... .......... 417 TGCAGAAGTG CATTTATTTT TTGTTAATTT GCCCTATGCT TGTTGCTCTG AAGAAAATGT 22979 .......... .......... .......... .......... .......... .......... 417 GTTGAGCCCA TAGTTAAATT GAACTAATAT TGCATTTAGC ATGGAGTTAA CTGTGAATTT 22919 .......... .......... .......... .......... .......... .......... 417 TGTCAAGTAA TAATTTCTTT GCCACATAAA CTATTGAACT CTATGTCCAT GGTGAAATTA 22859 .......... .......... .......... .......... .......... .......... 417 AACATCGTTA TCTAATGTTG TCTACTCTTT GGTTTTTCCT ATAAGTCCTA TCAAATAGAC 22799 .......... .......... .......... .......... .......... .......... 417 TTGTAGTACA TCAGTTCCAT TCTAGGAGAT GAATTGGTTG GTTGCAATAG CAGTTTCAGT 22739 .......... .......... .......... .......... .......... .......... 417 AGTGGTATTA ATGAAATTGG TGTTGGCATA AGGTTGCAAT AAGAGTACTT ATCTGTGCAA 22679 .......... .......... .......... .......... .......... .......... 417 GCATGCTTAA CAGTTTAAAC ATCAAGTCAA TGAGTTCTTT TAACCTTGAT GCACCGGGTA 22619 .......... .......... .......... .......... .......... .......... 417 TAGTATGTTT TGATCTTTCT AGTAATCTAT GGTGATATCT ATTAGGACGG ACTTACAGTA 22559 .......... .......... .......... .......... .......... .......... 417 AGCTCAACGA TTGTTTTATT TTTAACGGTG AACTGGATGT ATTGTCTATG AAGCACGTCA 22499 .......... .......... .......... .......... .......... .......... 417 GTTGGCTTTG TTGGGTCTAA CTTTATAAGG GACTTCTCGA ATGGATAGTT AGCAGAACTA 22439 .......... .......... .......... .......... .......... .......... 417 CACTTGAGGA ATGGTGCTAC TATAATGTAA CACCAATCCA TCTTGATGGA AGTTCTCGTT 22379 .......... .......... .......... .......... .......... .......... 417 AACCTGTGGA TGGTGAAGGA CTCGACAAAT TTATAGTGGA TGGGATGATG GGAATGATAT 22319 .......... .......... .......... .......... .......... .......... 417 CAATTGAAGA GTAAGGTGAA ATGATTAGGA GGTGGAAGAT CTTGTTATGA ACACCAAATC 22259 .......... .......... .......... .......... .......... .......... 417 AAACAGGCAG ACAAGCAACA GTGGATTGTT AAAGAGAAAT AAGACGCTTA TTGGTTTCTA 22199 .......... .......... .......... .......... .......... .......... 417 TTCACTTTCT GCTTTCTCTT TTGCCCCCCA TTTGGTGTGA AGGATTTAAT TGCTGTGAGG 22139 .......... .......... .......... .......... .......... .......... 417 TAGAATCTAT AGACTAGTTT GCATTCATGG AGATTCTGTA ACTATTCCAA AGAGATGGGA 22079 .......... .......... .......... .......... .......... .......... 417 AGTTCGAGAC AATTGAGGTT TTTTCTTGAA ATTGGAAGCA ATTACTAATT CATGGTAGGA 22019 .......... .......... .......... .......... .......... .......... 417 CATGTACTGA TGTACATAGT AAAAACTTCA TTCTCGAATT CTCTGAGAAC TTATGTTGAT 21959 .......... .......... .......... .......... .......... .......... 417 AATTTTTTAG CAGTTGGTTA GGCAACAATT ATTTTTCATA GAAGTACTCT TTTGTTTTGT 21899 .......... .......... .......... .......... .......... .......... 417 ACAACAAGCT TTCTCTAGAC TGTGTTTCAT ATTTGACATT TATTATGGAC ACGTGAAGTT 21839 .......... .......... .......... .......... .......... .......... 417 TTGATGGTTG ATTCTGGAAT CACCAATTTG CATATTCATA TTTGGGACAT TGAAGTCACC 21779 .......... .......... .......... .......... .......... .......... 417 AATTAAGACA AAAGGATCAA ATTTTGACAT TTTGTGGTAG TATCTCGTTT TTAGCTTTCT 21719 .......... .......... .......... .......... .......... .......... 417 TTACAAAATT GTATTGCTAT ACAGTATCTC TTGCTCCCTG TCTTTACAGT CACCATTCAA 21659 .......... .......... .......... .......... .......... .......... 417 TCTCTGCCTC CCTTCATTTG ACTGCTTTTT TGTCTACCGC TATGCATGCG TACTCCATTC 21599 .......... .......... .......... .......... .......... .......... 417 TATTACTGAT GGTTGGTGAT GTATAGTTGG TTCCTTCTCT GGACATACAC TAGGTTATTA 21539 .......... .......... .......... .......... .......... .......... 417 TGGTAACTTT AGCTTGGTTA AGTAATGCTT GGCAGTTTCT GCATTTTTTT TAAATGTATA 21479 .......... .......... .......... .......... .......... .......... 417 GATCTCCTCT TGATCGACAA CAAAGTCATT ACTTCGTATG AAGCATTCGT GGATCTTAGT 21419 .......... .......... .......... .......... .......... .......... 417 TTCAAGCTAG CTTACACTTC ATTTTGTCGT ATCTTAGGAT CTTAGTTTCA AGCTAGCTTA 21359 .......... .......... .......... .......... .......... .......... 417 TACTTCATTT TGTCGTATCT TACAAGTCTC AGAACCTATG CAGGTATTGT AAAAAACATG 21299 .......... .......... .......... .......... .......... .......... 417 ACCTAGTTGG ATCTTTTTTC CGATAACGCG TCACCTAGTT GGATCTTGAC TGACATAACA 21239 .......... .......... .......... .......... .......... .......... 417 CACACTCATA CTATGTTTGC ACTTTGAATG TGGTTTCTTA TTCATTTGAG AAACAGAAAC 21179 .......... .......... .......... .......... .......... .......... 417 AAATACGATG CTGAAGACTT ATGTGGTTTG TATGCTATTC TGATAGATTT TCGTTTCAGT 21119 .......... .......... .......... .......... .......... .......... 417 AAGTAGTTTA GAATGTGGAT TGGAAGCTTA GTTTTCTTTC TGATTTTGGT CTTCAACTCC 21059 .......... .......... .......... .......... .......... .......... 417 TTTTGGATCT TCCTTATTGC TTTCTGGGGG ATTTCGATTT TCCTGGTAAT TGTCATGATG 20999 .......... .......... .......... .......... .......... .......... 417 TCGTAATCAT ATACTATCTT AATACACGTA AGTGTGCCAC AGTGGCATAA GGGGGATTAC 20939 .......... .......... .......... .......... .......... .......... 417 CTATGTAAAG AAAATTACAT AAAGCAGTTA AAGCACTATA AACTAGGTCA TCTCCAATGA 20879 .......... .......... .......... .......... .......... .......... 417 TATAATCTTA TATGGACTAG AATAGGATTT TCAGCAAGAA GTACATTTAA AGAACCGTGA 20819 .......... .......... .......... .......... .......... .......... 417 CTTAGCATAA ATGTTAAAAT TATTGTACAA ATGCGGTCTT AAGTTTCTTG TAAAACAGGA 20759 .......... .......... .......... .......... .......... .......... 417 TGAGGTATAA AGTTGTGATT CTCAGAATGC TTCCTATTAG ACTTTAATGG AGCAGTTTTC 20699 .......... .......... .......... .......... .......... .......... 417 CTTCTTTTCC ATGACTTGTT TTTCTTTTTT TGATAACCAC GGTGTCTGAG CACAAGTACC 20639 .......... .......... .......... .......... .......... .......... 417 TGGTAACTGT GCCTATCAAG GATTGGATAT ATGGCAAAAA GTCATTTTTT GAAAATTAAA 20579 .......... .......... .......... .......... .......... .......... 417 ATATGGCTGA AAATCTGGAG TGCTTTTTTT CTGTCTTTTT GGTAAACTTG GTATAATCTT 20519 .......... .......... .......... .......... .......... .......... 417 CTCCTTTCTT TTTTCTTTTC GGGCTGTGGC TTGTGTCTTG TGCCTTGACA GACATCTGAA 20459 .......... .......... .......... .......... .......... .......... 417 GCAGTTGTCA ACCAGCACTG TCTGTCCTAG GGGCTGGTCA TCTACATGAA ATTTTACAAA 20399 .......... .......... .......... .......... .......... .......... 417 CTTGGTCTTT AAAACATGTC ATGTCTTAGA GGTTAGTCAT CTACATGAAG TCTTACAAAG 20339 .......... .......... .......... .......... .......... .......... 417 TAGGGTCTTA GATACATATC ATCTTGTTGG CTTATATTTT TGACAGGTGA TATGGGATCA 20279 .......... .......... .......... .......... .......... .......... 417 GGGATGAGTG CAGTATATGT TGCAAGGTAT ATATAAATAT TTGTCAAGGT AATCAGATAG 20219 .......... .......... .......... .......... .......... .......... 417 CTTGAGTCTT ATACTTGTCT TATACATGTT GTATACTTGG TACTTCTTTG GGATTTGAAG 20159 .......... .......... .......... .......... .......... .......... 417 TATCTCATAG GTTTTTTCGT GGTGTCTAGT TTCCTTTGAA TACTTGTATG CTTCAACATT 20099 .......... .......... .......... .......... .......... .......... 417 TATGGGTGCA TTACCATATG GAACTATTTA TTGATATTAA TTACCAATCA ACAAGAGAAA 20039 .......... .......... .......... .......... .......... .......... 417 CCGTGAACAT CTGAGTAAGG GTTGGTATTG CAAGTTATAG TTCAAGAATA GCGGAAGTGC 19979 .......... .......... .......... .......... .......... .......... 417 TGCAATATTC TAGAAAACTT CGTCTTAAAA GGATTTAGAT ACCTACTCAG ATGTTAGTGG 19919 .......... .......... .......... .......... .......... .......... 417 CAGTTGCAAG TATAAGACAT TTGCTGCCGA TTCTTATCTA CTCATCCTGC TATCTTTTCA 19859 .......... .......... .......... .......... .......... .......... 417 GTTGCAAGTA TAAGACATTT GCTGCCGATT CTTATCTACT CATCCTGCTA TCTTTCAGTG 19799 .......... .......... .......... .......... .......... .......... 417 TCTTGATTCT ATTGTTTGCT AAATTTAAAC ATACTGCTCA GCAGATGATT CCCTTGTTCT 19739 .......... .......... .......... .......... .......... .......... 417 TCTGCGGGGA CTTTATTTTG GTAGATCTAT TCTAATTGTT CTGATTGAAC CTGTGTCTCT 19679 .......... .......... .......... .......... .......... .......... 417 CTTTCCCCCG TGCATTGGGT GTTCTATTTT CTGTGCAGAC TTGCTATCTG CTGTTCGAAA 19619 .......... .......... .......... .......... .......... .......... 417 AGCTGTGGAA GATGAAAAAC TGCCACTGAA TGTTGCTGAA GGAATGGAGG AGTTGTATCA 19559 .......... .......... .......... .......... .......... .......... 417 GAACTATCAG AATGCAGTAA AACACCTTTC TTTGAACTTG TGGTTAAATG TACTCTTTTA 19499 .......... .......... .......... .......... .......... .......... 417 AGTGTTGGGT CATGGGTGCT TTGTTCGCTT AGATATGTTT GCTCATATGC AAGAGTCTTC 19439 .......... .......... .......... .......... .......... .......... 417 TTGCATGAAC ATACTTTCTG GGTCATAACA TGCTTTCTTA AGTTACTAAA GAACAGTATA 19379 |||| || | .......... .......... .......... .......... .......... .AACAATAAA 426 TAATAGATTT AAGATGGTTG AGAATACAAT TAAATAATAA ACGTGTGCTC TCTCTAATGG 19319 ||| ||| | || ||| || | || |||| | | |||| | TAAAGGATAT AACATGATTC AAAAGACAA- CACGTGATAA CC........ .......... 467 CTTAGGCTTT TAGATGAGAT GGTTACACAC TTCAACAATG ATGAATATTT TTTTTCTTCT 19259 .......... .......... .......... .......... .......... .......... 467 AATGTATTTG ATCATTTGAA TTTAGTGGAT GGTATTATGT AACTACACGC TGTTGGTATA 19199 .......... .......... .......... .......... .......... .......... 467 AAAAAAGTTC ACGTTGTACC TATAACAGTA GATAAAACGC TGGAGCTGGA AAAGCTAAAG 19139 .......... .......... .......... .......... .......... .......... 467 TGGAGAGAGA AATCACAATT TGGCATGCCA TTACTTTTTT GTGACCAATT ATGTGGAAAG 19079 .......... .......... .......... .......... .......... .......... 467 ACATTATTAC GGGGCCAAAT GTTTTCAGAA AATGACCTGA AGATAATAGG TTAAGCCCTT 19019 .......... .......... .......... .......... .......... .......... 467 GTGAAGATTC TAAATGTAGT CTAACATTCA ACACGTTCAG TATCATTTCT TCCTAGAGCA 18959 || ||| .......... .......... .......... ..AC-TTCT. .......... .......... 473 TGGAAAATAT GATCTTGTGA TGACAAAACA ATAATAAAGA TAAATCTAGA GGAGGTGCTT 18899 .......... .......... .......... .......... .......... .......... 473 ATATTTGTAT GTTTGTCTTT GCCTGATTTT TCCGCACGTG TCTTTCTTGT TCCTACTTCT 18839 .......... .......... .......... .......... .......... .......... 473 CTAGTATATC TTATTTTCAC TAATAAATAA TAACTCGCCT CCTCCTTCCC TCTTTCCTAC 18779 .......... .......... .......... .......... .......... .......... 473 TAAATTTTAG AGAATTTCAT TTATTTCATT CTTGGAAAGA CTACTACTTT TGGACTTACC 18719 .......... .......... .......... .......... .......... .......... 473 ATATTTGGTG AAGTAATCCA ATCTATCTTT TAGACTTGTC AGATTATCAA TCTGTTTGGA 18659 .......... .......... .......... .......... .......... .......... 473 TTTAATTTAT TCATGATACT CGTGCGCTTT TCTTTGAGAG AGAACGAGTT TGTTGAGACC 18599 .......... .......... .......... .......... .......... .......... 473 TGGAGTTCGG CATTTTCTTT TTTGTTTATT TGGAGAACTT GTTGTGGTCA TGTGCCCTCT 18539 .......... .......... .......... .......... .......... .......... 473 TGATTTTTCC TGATCGTTTT TTATAGGTTT TACAAAGCGG CGTTCCCAAA GCAGATGAGG 18479 .......... .......... .......... .......... .......... .......... 473 CCATTTTGTA TAACATGGCT CTTGTATTCG ACCGTGTTTT TGTGGATGTG AAGGTATTCT 18419 .......... .......... .......... .......... .......... .......... 473 TCTGCCGTGT TGATCTTTCA AATTCATGCT AGAAGTTTCC CCTATATCTT TGTTTCTCGT 18359 .......... .......... .......... .......... .......... .......... 473 TACTTCATCT AAGCACACAT GTATTCTATC AAGTTGTTAG AATGTAAAAT TGTAAAATGT 18299 .......... .......... .......... .......... .......... .......... 473 AGCAATGCTC TTATTTCAGG ATCCTTTTGA ATTCTCGCCG TATCATAAGG CCATTCGTGA 18239 .......... .......... .......... .......... .......... .......... 473 ACCTTTTGAC TATTACAAGT TTGGTCAAAA TTATATCCGC CAGCTAGTTG ATTTCAGGTG 18179 .......... .......... .......... .......... .......... .......... 473 AGTCTCAGTT CTCTCTCTGT AGTGTGTATC ATGTAATAGT TTGACTAACT TAAAAAATGC 18119 .......... .......... .......... .......... .......... .......... 473 GCGGTTCTTT CAATCTTGTT AATGATTGAA TTCACAGGAA ATATTCGAGT AAACAGCTTA 18059 .......... .......... .......... .......... .......... .......... 473 AAATATCCTT TGATTTACAT CCTTTTGTCG TTGTAATATT TGCTTGTTCA GATCAACGTA 17999 | |||| | .......... .......... .......... .......... .......... .A-CAACTTG 481 TTCAAGACCA 17989 | || || || TGCATGATCA 491 hqPGS_C08HBa0320P23.1-_SGN-E540411+ (24742 24477) ******************************************************************************** EST sequence 131 +strand 621 n (File: SGN-E309211+) 1 TCACACAAGA GAACTGAAGA GTGACAAAAA TGGCAAAGTC GTCGGCGACC AAAGACGCCC 61 AAGCTCTTTT CCATTCTCTC CGTTCTGCTT ATGCCGCAAC TCCGACGAAT CTCAAGATCA 121 TTGATCTATA TGTCATCTTT GCGATCTCTA CTGCCTTAAT TCAGGTGGTA TACATGGCTA 181 TTGTTGGATC ATTTCCATTC AACTCTTTTC TCTCTGGGGT GCTTTCTTGT ATTGGCACAG 241 CAGTCCTTGC TGTTTGTCTT CGGATCCAAG TAAACAAAGA AAACAAGGAA TTCAAGGATT 301 TGCCTCCGGA ACGTGCTTTT GCAGATTTTG TTCTCTGCAA TTTAGTGCTC CATTTGGTGA 361 TCATGAACTT TCTTGGCTAG ATTGAGGCAC CAAATCTTGA AAATGTTGCT CTTACAAATC 421 TTGGTGATTT TTATGTAAGA ATAATATAGA GTCAATCGTA AAGGATTTTG TTAGGCTTTC 481 GGAAATATTA AGTTTCTCAT GCATGAAACT ATTTTACATT TATGAATCTT ATATGAGTAT 541 TAGTAAGTAG ACAATCTTTG GCCATTCTGA GTTCTATAGC CCAAAAAGGA GCCAAACTTT 601 TTCGGTATCA AAAAAAAAAA A Predicted gene structure (within gDNA segment 31926 to 26832): Exon 1 31326 31211 ( 116 n); cDNA 1 116 ( 116 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 117 164 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 165 252 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 253 296 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27540 ( 308 n); cDNA 297 604 ( 308 n); score: 1.000 PPA cDNA 610 621 MATCH C08HBa0320P23.1- SGN-E309211+ 1.000 604 0.973 C PGS_C08HBa0320P23.1-_SGN-E309211+ (31326 31211,31086 31039,28327 28240,28156 28113,27847 27540) Alignment (genomic DNA sequence = upper lines): TCACACAAGA GAACTGAAGA GTGACAAAAA TGGCAAAGTC GTCGGCGACC AAAGACGCCC 31267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACACAAGA GAACTGAAGA GTGACAAAAA TGGCAAAGTC GTCGGCGACC AAAGACGCCC 60 AAGCTCTTTT CCATTCTCTC CGTTCTGCTT ATGCCGCAAC TCCGACGAAT CTCAAGGTAA 31207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAGCTCTTTT CCATTCTCTC CGTTCTGCTT ATGCCGCAAC TCCGACGAAT CTCAAG.... 116 CTGACTCTCT CCTCGATTCC CGTGCAGCAA TTTACTTTCA TACAACTTTC AAATCTATAC 31147 .......... .......... .......... .......... .......... .......... 116 AGTTTCAGTC AATATTCACG TATTTCTATT GGGTTCTAAT TGAATTGTTT TTCATCGCAG 31087 .......... .......... .......... .......... .......... .......... 116 ATCATTGATC TATATGTCAT CTTTGCGATC TCTACTGCCT TAATTCAGGT ATTTACTTAA 31027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATCATTGATC TATATGTCAT CTTTGCGATC TCTACTGCCT TAATTCAG.. .......... 164 CAACTTTGCT GTCATTGATC CATTTTCTGT ATGTATGTAT CTTATGGGGT CAATCTTATT 30967 .......... .......... .......... .......... .......... .......... 164 GCTATAGATC TGTAATTATT ATGTTCTTAC TGTGGTTGTA TTGGTAAAAT TTTGGATGAT 30907 .......... .......... .......... .......... .......... .......... 164 CCATGTTCTC ATAAGCTGTT AACTTTCTAA TGTCCTTCGA AATTTTTATT GAAAATGTAT 30847 .......... .......... .......... .......... .......... .......... 164 GTTATGGGGT TTGAATACTG ATGGCTTAAT GATGTCAGTT TAAGCATTAC CTAGATTGAT 30787 .......... .......... .......... .......... .......... .......... 164 TTGATCTTGG TCTAATGCTT GTTTCAATTG AGCATCTGAT GCATTAGAGA TATGCTTTTG 30727 .......... .......... .......... .......... .......... .......... 164 ATGCTAATGG CGAAGTGGCT GAGGCATAAT TTTTTTGGGA AGAATGTATT ATAAGTAGAA 30667 .......... .......... .......... .......... .......... .......... 164 AGTGGAGTTT GGGGCGGAGT ATGTTTTATG CTTTGAGGGG TATTATCTTT TATTCTGTAA 30607 .......... .......... .......... .......... .......... .......... 164 AGAAGATTCA AATTCAATCC TTCAATTGTT CAAACAACAC CAATAAGGTT AGATAGTATT 30547 .......... .......... .......... .......... .......... .......... 164 TATTATGAGA ATCTGTCATT TTGGTTTGTT GTGAATAATT AGCCTAATCA GAGCTAATAT 30487 .......... .......... .......... .......... .......... .......... 164 GGGAGGTCTA GAAGGTCACT GTTCCCTCTG TACATCCAAT GAAGAGTCAT TTGGTTTGAG 30427 .......... .......... .......... .......... .......... .......... 164 TCAGTTCCGT CATGAATTTT GACGTTACAG TCTGCCAACG TGATAGTCAC CTTTCATGAA 30367 .......... .......... .......... .......... .......... .......... 164 TTTTCATAGT AGTTACTATC CAATTCCTCT AATCCTTTTT TTATAAATCA AAATGATTTC 30307 .......... .......... .......... .......... .......... .......... 164 ATTAATAACA CCAAGAGGGT ATCACCATCC AACCATCTCT TCTATATAAA GTATCCCCTT 30247 .......... .......... .......... .......... .......... .......... 164 TTCAGTAAAT AAAATGGAAA TAAAGGTCTC TTGTCACCTC ATAGTAGACT CTCTAATCCT 30187 .......... .......... .......... .......... .......... .......... 164 CCAAAAAGTT CTTCTGTTCC CTTATCTCCA CATCAACCAA AGACATAAAG GGGAAGCCAC 30127 .......... .......... .......... .......... .......... .......... 164 TCTACATGTC CTTCCAGCAT CTATTTCAGG TCTCCACCTC TCCAATGTTC CTGTCAGACT 30067 .......... .......... .......... .......... .......... .......... 164 CACAGAATTA GGCTGATATT TGACATGGGA TGTACCGACA ATAGTTCCAT TGTGAACTAA 30007 .......... .......... .......... .......... .......... .......... 164 TTATAACCAT CTCCTTGTCA AGCATCTGCT GTTAAAGGTG ATTTTCAACT CTGCATACCA 29947 .......... .......... .......... .......... .......... .......... 164 TGTGAAGAAA GTTAGTTTCT TTGGTACCTT TTTCTCCCAT ACTGATCTCT ATTTTTTTAA 29887 .......... .......... .......... .......... .......... .......... 164 AAAATCAGCA ACTGCGAAAG ACAATCATAA TACGATTCTA AGGCGGTGAT CTTTTCCACA 29827 .......... .......... .......... .......... .......... .......... 164 TCACTCTATC TTCTTCCCAA AGCAGTCATG TTTACATCAT CCGTTTTCCA CTCTTGTATG 29767 .......... .......... .......... .......... .......... .......... 164 TATCTCTAAA ATAAAATTTG ACAATACTTG GCTCCCTTCT CTTCTGAGGA GTTTGTCTGC 29707 .......... .......... .......... .......... .......... .......... 164 TGTTGCTTCT TTGTCACTAT CCTTTAGAAG TTGGATCCGA ATACCATGCA TCCTACCAAT 29647 .......... .......... .......... .......... .......... .......... 164 GTTGGATTTG GTTACATATC CTTACCTTAC CTTACCATAC AACCAATGAA TTTGGAAAAT 29587 .......... .......... .......... .......... .......... .......... 164 TCATCCTTCC CTTCCTGTTT CTTCTCTGTA AGCTGCATTA CGATGTAATA CCTCCCATGG 29527 .......... .......... .......... .......... .......... .......... 164 GAACCATCAA TTTTGATGAC ACCAGCTTCT AGTAACAATC ACCTTCATCC ATAATGTATC 29467 .......... .......... .......... .......... .......... .......... 164 CATTTGAGTC ACACACATCT AAACTACTTT TCCTGAAGGA TTTGATTAAA TATTACTCAG 29407 .......... .......... .......... .......... .......... .......... 164 GTCACCCAAC TCTAGAGGGG CTATCACCTT ATCCTATTCT ACGAATGATA TCATTTCTCC 29347 .......... .......... .......... .......... .......... .......... 164 CCCTTTGTGT CATATCATTA AAAACTCATT AATTTTTCAG CTTTTCTTTT CCAAGTGAGA 29287 .......... .......... .......... .......... .......... .......... 164 GGGATAGTGA ATAATGACAT AAAATAAGTT TACAGGTAAG TATCAACTTG GTGAGGGTGA 29227 .......... .......... .......... .......... .......... .......... 164 TCTTTTCTCC TCTTGATAAA TACTGCATCT TCCACTTGTC CAATCTCTTT TCAATCTTGT 29167 .......... .......... .......... .......... .......... .......... 164 TGAATTACTG GTCGCCGGAG TTCCAGTATC TTTTAACAAT TCTCCTCCTA TATGGTCGTG 29107 .......... .......... .......... .......... .......... .......... 164 TTGATTCTTG ATTCATTATA AAAAACATGA TTTCTATGAA GCATGCTAAA CCAGCTCCTA 29047 .......... .......... .......... .......... .......... .......... 164 TTAACTATGT TGCTCCGACT CTTAAAAAAT GTCAATGGGT GGTTGTCAGA TTCTCCAAAA 28987 .......... .......... .......... .......... .......... .......... 164 GTTGTGTATT TCTTGTAAAA TTCGACACGA GTGCGGCATC GAAAGTGAAG TGTCCGTGAA 28927 .......... .......... .......... .......... .......... .......... 164 ACTTAGCCTA TTAGTCAGTG GTGCCATTCC GGCTCTTTTA CCTGCTCCTT GCAACTTTCT 28867 .......... .......... .......... .......... .......... .......... 164 GTTCTTTTGC AGTGATGGAC ATTAAGGATT GGGCAAACCG TACCTCTGCT AAAGATAGTG 28807 .......... .......... .......... .......... .......... .......... 164 CTTACATAAT CAGATATGAC GCCCAGAAAC ATTGTTAGAC TATCACAGCC CAAATTGCTG 28747 .......... .......... .......... .......... .......... .......... 164 AAAAAGATCT TTAACCTATT TTGGCAAAAT TCTCATATTT ATTTGCCGAT TTCAGTTTGT 28687 .......... .......... .......... .......... .......... .......... 164 ATTATTGCCA AGGAGCACTC CTTTTACACA AGTCACTACT TTCTTTTTCT TTGTTATCCT 28627 .......... .......... .......... .......... .......... .......... 164 ATTCTTCCTA AGCTCTTATC TCTGTAAAGT CATTGCAAAC ACAATGACGT TGTGTGAGAA 28567 .......... .......... .......... .......... .......... .......... 164 AGGATCATTT TCCTGTAATT TGTTATTTGA CTGTGCTTTC TTATGGGAAG GCAAATATAA 28507 .......... .......... .......... .......... .......... .......... 164 TGTGCCACTC TCACAAGGCA GCAATTTGCC TGTGTAAATA GCTCCTTTGC TAATTCATTT 28447 .......... .......... .......... .......... .......... .......... 164 GTTGCCAATT TGAAGAGTAA AAACATGATT CAATGTCTGA GAATCAAGAT ATTTTTGCTT 28387 .......... .......... .......... .......... .......... .......... 164 GATTTGTACA ATTATCTGTT TGATGGTTGA CGTATTTTTC ACTTCTACTG GCAACTCAGG 28327 | .......... .......... .......... .......... .......... .........G 165 TGGTATACAT GGCTATTGTT GGATCATTTC CATTCAACTC TTTTCTCTCT GGGGTGCTTT 28267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTATACAT GGCTATTGTT GGATCATTTC CATTCAACTC TTTTCTCTCT GGGGTGCTTT 225 CTTGTATTGG CACAGCAGTC CTTGCTGGTG AGCTTGAGTG GTCTATTTAG ATGCACTCCA 28207 |||||||||| |||||||||| ||||||| CTTGTATTGG CACAGCAGTC CTTGCTG... .......... .......... .......... 252 TTTTTGAGAA AACGTTTATT TGAAATGATT CATTAATATC TTTCTTACAG TTTGTCTTCG 28147 |||||||||| .......... .......... .......... .......... .......... TTTGTCTTCG 262 GATCCAAGTA AACAAAGAAA ACAAGGAATT CAAGGTAAGC TTTCTTGGGA TATGATCTTC 28087 |||||||||| |||||||||| |||||||||| |||| GATCCAAGTA AACAAAGAAA ACAAGGAATT CAAG...... .......... .......... 296 CATTTTACAG TTTTACCTTG AATCTCCCCT CTAATTTAGT TGTGTTAAAA TATGTTGCGA 28027 .......... .......... .......... .......... .......... .......... 296 CGTCATAGAT TATCAATGAA TGTGTAGCAT GTCATGCACT TCTAGTTATG CGGTCTCTTC 27967 .......... .......... .......... .......... .......... .......... 296 CTAGAAGAAG AGAAATGTAA CTTGAGGCAG CTGGGCTTAT GTTTGTTTTT TCCTTTCAAA 27907 .......... .......... .......... .......... .......... .......... 296 TTACTAGTGC TTACAGAGTA TGTCAATGAA TCTCATTTAC GTTTGGTCCA CCATTGCAGG 27847 | .......... .......... .......... .......... .......... .........G 297 ATTTGCCTCC GGAACGTGCT TTTGCAGATT TTGTTCTCTG CAATTTAGTG CTCCATTTGG 27787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCCTCC GGAACGTGCT TTTGCAGATT TTGTTCTCTG CAATTTAGTG CTCCATTTGG 357 TGATCATGAA CTTTCTTGGC TAGATTGAGG CACCAAATCT TGAAAATGTT GCTCTTACAA 27727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCATGAA CTTTCTTGGC TAGATTGAGG CACCAAATCT TGAAAATGTT GCTCTTACAA 417 ATCTTGGTGA TTTTTATGTA AGAATAATAT AGAGTCAATC GTAAAGGATT TTGTTAGGCT 27667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGGTGA TTTTTATGTA AGAATAATAT AGAGTCAATC GTAAAGGATT TTGTTAGGCT 477 TTCGGAAATA TTAAGTTTCT CATGCATGAA ACTATTTTAC ATTTATGAAT CTTATATGAG 27607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGGAAATA TTAAGTTTCT CATGCATGAA ACTATTTTAC ATTTATGAAT CTTATATGAG 537 TATTAGTAAG TAGACAATCT TTGGCCATTC TGAGTTCTAT AGCCCAAAAA GGAGCCAAAC 27547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGTAAG TAGACAATCT TTGGCCATTC TGAGTTCTAT AGCCCAAAAA GGAGCCAAAC 597 TTTTTCG 27540 ||||||| TTTTTCG 604 hqPGS_C08HBa0320P23.1-_SGN-E309211+ (31326 31211,31086 31039,28327 28240,28156 28113,27847 27540) ******************************************************************************** EST sequence 135 +strand 563 n (File: SGN-E321785+) 1 GAGGTCACAC AAGAGAACTG AAGAGTGACA AAAATGGCAA AGTCGTCGGC GACCAAAGAC 61 GCCCAAGCTC TTTTCCATTC TCTCCGTTCT GCTTATGCCG CAACTCCGAC GAATCTCAAG 121 ATCATTGATC TATATGTCAT CTTTGCGATC TCTACTGCCT TAATTCAGGT GGTATACATG 181 GCTATTGTTG GATCATTTCC ATTCAACTCT TTTCTCTCTG GGGTGCTTTC TTGTATTGGC 241 ACAGCAGTCC TTGCTGTTTG TCTTCGGATC CAAGTAAACA AAGAAAACAA GGAATTCAAG 301 GATTTGCCTC CGGAACGTGC TTTTGCAGAT TTTGTTCTCT GCAATTTAGT GCTCCATTTG 361 GTGATCATGA ACTTTCTTGG CTAGATTGAG GCACCAAATC TTGAAAATGT TGCTCTTACA 421 AATCTTGGTG ATTTTTATGT AAGAATAATA TAGAGTCAAT CGTAAAGGAT TTTGTTAGGC 481 TTTCGGAAAT ATTAAGTTTC TCATGCATGA AACTATTTTA CATTTATGAA TCTTATATGA 541 GTATTAGTAA GTAAAAAAAA AAA Predicted gene structure (within gDNA segment 31930 to 26885): Exon 1 31330 31211 ( 120 n); cDNA 1 120 ( 120 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 121 168 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 169 256 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 257 300 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27590 ( 258 n); cDNA 301 558 ( 258 n); score: 0.992 MATCH C08HBa0320P23.1- SGN-E321785+ 0.996 558 0.991 C PGS_C08HBa0320P23.1-_SGN-E321785+ (31330 31211,31086 31039,28327 28240,28156 28113,27847 27590) Alignment (genomic DNA sequence = upper lines): GAGGTCACAC AAGAGAACTG AAGAGTGACA AAAATGGCAA AGTCGTCGGC GACCAAAGAC 31271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTCACAC AAGAGAACTG AAGAGTGACA AAAATGGCAA AGTCGTCGGC GACCAAAGAC 60 GCCCAAGCTC TTTTCCATTC TCTCCGTTCT GCTTATGCCG CAACTCCGAC GAATCTCAAG 31211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAAGCTC TTTTCCATTC TCTCCGTTCT GCTTATGCCG CAACTCCGAC GAATCTCAAG 120 GTAACTGACT CTCTCCTCGA TTCCCGTGCA GCAATTTACT TTCATACAAC TTTCAAATCT 31151 .......... .......... .......... .......... .......... .......... 120 ATACAGTTTC AGTCAATATT CACGTATTTC TATTGGGTTC TAATTGAATT GTTTTTCATC 31091 .......... .......... .......... .......... .......... .......... 120 GCAGATCATT GATCTATATG TCATCTTTGC GATCTCTACT GCCTTAATTC AGGTATTTAC 31031 |||||| |||||||||| |||||||||| |||||||||| |||||||||| || ....ATCATT GATCTATATG TCATCTTTGC GATCTCTACT GCCTTAATTC AG........ 168 TTAACAACTT TGCTGTCATT GATCCATTTT CTGTATGTAT GTATCTTATG GGGTCAATCT 30971 .......... .......... .......... .......... .......... .......... 168 TATTGCTATA GATCTGTAAT TATTATGTTC TTACTGTGGT TGTATTGGTA AAATTTTGGA 30911 .......... .......... .......... .......... .......... .......... 168 TGATCCATGT TCTCATAAGC TGTTAACTTT CTAATGTCCT TCGAAATTTT TATTGAAAAT 30851 .......... .......... .......... .......... .......... .......... 168 GTATGTTATG GGGTTTGAAT ACTGATGGCT TAATGATGTC AGTTTAAGCA TTACCTAGAT 30791 .......... .......... .......... .......... .......... .......... 168 TGATTTGATC TTGGTCTAAT GCTTGTTTCA ATTGAGCATC TGATGCATTA GAGATATGCT 30731 .......... .......... .......... .......... .......... .......... 168 TTTGATGCTA ATGGCGAAGT GGCTGAGGCA TAATTTTTTT GGGAAGAATG TATTATAAGT 30671 .......... .......... .......... .......... .......... .......... 168 AGAAAGTGGA GTTTGGGGCG GAGTATGTTT TATGCTTTGA GGGGTATTAT CTTTTATTCT 30611 .......... .......... .......... .......... .......... .......... 168 GTAAAGAAGA TTCAAATTCA ATCCTTCAAT TGTTCAAACA ACACCAATAA GGTTAGATAG 30551 .......... .......... .......... .......... .......... .......... 168 TATTTATTAT GAGAATCTGT CATTTTGGTT TGTTGTGAAT AATTAGCCTA ATCAGAGCTA 30491 .......... .......... .......... .......... .......... .......... 168 ATATGGGAGG TCTAGAAGGT CACTGTTCCC TCTGTACATC CAATGAAGAG TCATTTGGTT 30431 .......... .......... .......... .......... .......... .......... 168 TGAGTCAGTT CCGTCATGAA TTTTGACGTT ACAGTCTGCC AACGTGATAG TCACCTTTCA 30371 .......... .......... .......... .......... .......... .......... 168 TGAATTTTCA TAGTAGTTAC TATCCAATTC CTCTAATCCT TTTTTTATAA ATCAAAATGA 30311 .......... .......... .......... .......... .......... .......... 168 TTTCATTAAT AACACCAAGA GGGTATCACC ATCCAACCAT CTCTTCTATA TAAAGTATCC 30251 .......... .......... .......... .......... .......... .......... 168 CCTTTTCAGT AAATAAAATG GAAATAAAGG TCTCTTGTCA CCTCATAGTA GACTCTCTAA 30191 .......... .......... .......... .......... .......... .......... 168 TCCTCCAAAA AGTTCTTCTG TTCCCTTATC TCCACATCAA CCAAAGACAT AAAGGGGAAG 30131 .......... .......... .......... .......... .......... .......... 168 CCACTCTACA TGTCCTTCCA GCATCTATTT CAGGTCTCCA CCTCTCCAAT GTTCCTGTCA 30071 .......... .......... .......... .......... .......... .......... 168 GACTCACAGA ATTAGGCTGA TATTTGACAT GGGATGTACC GACAATAGTT CCATTGTGAA 30011 .......... .......... .......... .......... .......... .......... 168 CTAATTATAA CCATCTCCTT GTCAAGCATC TGCTGTTAAA GGTGATTTTC AACTCTGCAT 29951 .......... .......... .......... .......... .......... .......... 168 ACCATGTGAA GAAAGTTAGT TTCTTTGGTA CCTTTTTCTC CCATACTGAT CTCTATTTTT 29891 .......... .......... .......... .......... .......... .......... 168 TTAAAAAATC AGCAACTGCG AAAGACAATC ATAATACGAT TCTAAGGCGG TGATCTTTTC 29831 .......... .......... .......... .......... .......... .......... 168 CACATCACTC TATCTTCTTC CCAAAGCAGT CATGTTTACA TCATCCGTTT TCCACTCTTG 29771 .......... .......... .......... .......... .......... .......... 168 TATGTATCTC TAAAATAAAA TTTGACAATA CTTGGCTCCC TTCTCTTCTG AGGAGTTTGT 29711 .......... .......... .......... .......... .......... .......... 168 CTGCTGTTGC TTCTTTGTCA CTATCCTTTA GAAGTTGGAT CCGAATACCA TGCATCCTAC 29651 .......... .......... .......... .......... .......... .......... 168 CAATGTTGGA TTTGGTTACA TATCCTTACC TTACCTTACC ATACAACCAA TGAATTTGGA 29591 .......... .......... .......... .......... .......... .......... 168 AAATTCATCC TTCCCTTCCT GTTTCTTCTC TGTAAGCTGC ATTACGATGT AATACCTCCC 29531 .......... .......... .......... .......... .......... .......... 168 ATGGGAACCA TCAATTTTGA TGACACCAGC TTCTAGTAAC AATCACCTTC ATCCATAATG 29471 .......... .......... .......... .......... .......... .......... 168 TATCCATTTG AGTCACACAC ATCTAAACTA CTTTTCCTGA AGGATTTGAT TAAATATTAC 29411 .......... .......... .......... .......... .......... .......... 168 TCAGGTCACC CAACTCTAGA GGGGCTATCA CCTTATCCTA TTCTACGAAT GATATCATTT 29351 .......... .......... .......... .......... .......... .......... 168 CTCCCCCTTT GTGTCATATC ATTAAAAACT CATTAATTTT TCAGCTTTTC TTTTCCAAGT 29291 .......... .......... .......... .......... .......... .......... 168 GAGAGGGATA GTGAATAATG ACATAAAATA AGTTTACAGG TAAGTATCAA CTTGGTGAGG 29231 .......... .......... .......... .......... .......... .......... 168 GTGATCTTTT CTCCTCTTGA TAAATACTGC ATCTTCCACT TGTCCAATCT CTTTTCAATC 29171 .......... .......... .......... .......... .......... .......... 168 TTGTTGAATT ACTGGTCGCC GGAGTTCCAG TATCTTTTAA CAATTCTCCT CCTATATGGT 29111 .......... .......... .......... .......... .......... .......... 168 CGTGTTGATT CTTGATTCAT TATAAAAAAC ATGATTTCTA TGAAGCATGC TAAACCAGCT 29051 .......... .......... .......... .......... .......... .......... 168 CCTATTAACT ATGTTGCTCC GACTCTTAAA AAATGTCAAT GGGTGGTTGT CAGATTCTCC 28991 .......... .......... .......... .......... .......... .......... 168 AAAAGTTGTG TATTTCTTGT AAAATTCGAC ACGAGTGCGG CATCGAAAGT GAAGTGTCCG 28931 .......... .......... .......... .......... .......... .......... 168 TGAAACTTAG CCTATTAGTC AGTGGTGCCA TTCCGGCTCT TTTACCTGCT CCTTGCAACT 28871 .......... .......... .......... .......... .......... .......... 168 TTCTGTTCTT TTGCAGTGAT GGACATTAAG GATTGGGCAA ACCGTACCTC TGCTAAAGAT 28811 .......... .......... .......... .......... .......... .......... 168 AGTGCTTACA TAATCAGATA TGACGCCCAG AAACATTGTT AGACTATCAC AGCCCAAATT 28751 .......... .......... .......... .......... .......... .......... 168 GCTGAAAAAG ATCTTTAACC TATTTTGGCA AAATTCTCAT ATTTATTTGC CGATTTCAGT 28691 .......... .......... .......... .......... .......... .......... 168 TTGTATTATT GCCAAGGAGC ACTCCTTTTA CACAAGTCAC TACTTTCTTT TTCTTTGTTA 28631 .......... .......... .......... .......... .......... .......... 168 TCCTATTCTT CCTAAGCTCT TATCTCTGTA AAGTCATTGC AAACACAATG ACGTTGTGTG 28571 .......... .......... .......... .......... .......... .......... 168 AGAAAGGATC ATTTTCCTGT AATTTGTTAT TTGACTGTGC TTTCTTATGG GAAGGCAAAT 28511 .......... .......... .......... .......... .......... .......... 168 ATAATGTGCC ACTCTCACAA GGCAGCAATT TGCCTGTGTA AATAGCTCCT TTGCTAATTC 28451 .......... .......... .......... .......... .......... .......... 168 ATTTGTTGCC AATTTGAAGA GTAAAAACAT GATTCAATGT CTGAGAATCA AGATATTTTT 28391 .......... .......... .......... .......... .......... .......... 168 GCTTGATTTG TACAATTATC TGTTTGATGG TTGACGTATT TTTCACTTCT ACTGGCAACT 28331 .......... .......... .......... .......... .......... .......... 168 CAGGTGGTAT ACATGGCTAT TGTTGGATCA TTTCCATTCA ACTCTTTTCT CTCTGGGGTG 28271 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTGGTAT ACATGGCTAT TGTTGGATCA TTTCCATTCA ACTCTTTTCT CTCTGGGGTG 225 CTTTCTTGTA TTGGCACAGC AGTCCTTGCT GGTGAGCTTG AGTGGTCTAT TTAGATGCAC 28211 |||||||||| |||||||||| |||||||||| | CTTTCTTGTA TTGGCACAGC AGTCCTTGCT G......... .......... .......... 256 TCCATTTTTG AGAAAACGTT TATTTGAAAT GATTCATTAA TATCTTTCTT ACAGTTTGTC 28151 |||||| .......... .......... .......... .......... .......... ....TTTGTC 262 TTCGGATCCA AGTAAACAAA GAAAACAAGG AATTCAAGGT AAGCTTTCTT GGGATATGAT 28091 |||||||||| |||||||||| |||||||||| |||||||| TTCGGATCCA AGTAAACAAA GAAAACAAGG AATTCAAG.. .......... .......... 300 CTTCCATTTT ACAGTTTTAC CTTGAATCTC CCCTCTAATT TAGTTGTGTT AAAATATGTT 28031 .......... .......... .......... .......... .......... .......... 300 GCGACGTCAT AGATTATCAA TGAATGTGTA GCATGTCATG CACTTCTAGT TATGCGGTCT 27971 .......... .......... .......... .......... .......... .......... 300 CTTCCTAGAA GAAGAGAAAT GTAACTTGAG GCAGCTGGGC TTATGTTTGT TTTTTCCTTT 27911 .......... .......... .......... .......... .......... .......... 300 CAAATTACTA GTGCTTACAG AGTATGTCAA TGAATCTCAT TTACGTTTGG TCCACCATTG 27851 .......... .......... .......... .......... .......... .......... 300 CAGGATTTGC CTCCGGAACG TGCTTTTGCA GATTTTGTTC TCTGCAATTT AGTGCTCCAT 27791 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GATTTGC CTCCGGAACG TGCTTTTGCA GATTTTGTTC TCTGCAATTT AGTGCTCCAT 357 TTGGTGATCA TGAACTTTCT TGGCTAGATT GAGGCACCAA ATCTTGAAAA TGTTGCTCTT 27731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGATCA TGAACTTTCT TGGCTAGATT GAGGCACCAA ATCTTGAAAA TGTTGCTCTT 417 ACAAATCTTG GTGATTTTTA TGTAAGAATA ATATAGAGTC AATCGTAAAG GATTTTGTTA 27671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATCTTG GTGATTTTTA TGTAAGAATA ATATAGAGTC AATCGTAAAG GATTTTGTTA 477 GGCTTTCGGA AATATTAAGT TTCTCATGCA TGAAACTATT TTACATTTAT GAATCTTATA 27611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTCGGA AATATTAAGT TTCTCATGCA TGAAACTATT TTACATTTAT GAATCTTATA 537 TGAGTATTAG TAAGTAGACA A 27590 |||||||||| |||||| | | | TGAGTATTAG TAAGTAAAAA A 558 hqPGS_C08HBa0320P23.1-_SGN-E321785+ (31330 31211,31086 31039,28327 28240,28156 28113,27847 27590) ******************************************************************************** EST sequence 92 +strand 557 n (File: SGN-E339161+) 1 AGGTCACACA AGAGAACTGA AGAGTGACAA AAATGGCAAA GTCGTCGGCG ACCAAAGACG 61 CCCAAGCTCT TTTCCATTCT CTCCGTTCTG CTTATGCCGC AACTCCGACG AATCTCAAGA 121 TCATTGATCT ATATGTCATC TTTGCGATCT CTACTGCCTT AATTCAGGTG GTATACATGG 181 CTATTGTTGG ATCATTTCCA TTCAACTCTT TTCTCTCTGG GGTGCTTTCT TGTATTGGCA 241 CAGCAGTCCT TGCTGTTTGT CTTCGGATCC AAGTAAACAA AGAAAACAAG GAATTCAAGG 301 ATTTGCCTCC GGAACGTGCT TTTGCAGATT TTGTTCTCTG CAATTTAGTG CTCCATTTGG 361 TGATCATGAA CTTTCTTGGC TAGATTGAGG CACCAAATCT TGAAAATGTT GCTCTTACAA 421 ATCTTGGTGA TTTTTATGTA AGAATAATAT AGAGTCAATC GTAAAGGATT TTGTTAGGCT 481 TTCGGAAATA TTAAGTTTCT CATGCATGAA ACTATTTTAC ATTTATGAAT CTTATATGAG 541 TATTAGTAAA AAAAAAA Predicted gene structure (within gDNA segment 31929 to 26908): Exon 1 31329 31211 ( 119 n); cDNA 1 119 ( 119 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 120 167 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 168 255 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 256 299 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27590 ( 258 n); cDNA 300 557 ( 258 n); score: 0.984 MATCH C08HBa0320P23.1- SGN-E339161+ 0.991 557 1.000 C PGS_C08HBa0320P23.1-_SGN-E339161+ (31329 31211,31086 31039,28327 28240,28156 28113,27847 27590) Alignment (genomic DNA sequence = upper lines): AGGTCACACA AGAGAACTGA AGAGTGACAA AAATGGCAAA GTCGTCGGCG ACCAAAGACG 31270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCACACA AGAGAACTGA AGAGTGACAA AAATGGCAAA GTCGTCGGCG ACCAAAGACG 60 CCCAAGCTCT TTTCCATTCT CTCCGTTCTG CTTATGCCGC AACTCCGACG AATCTCAAGG 31210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCCAAGCTCT TTTCCATTCT CTCCGTTCTG CTTATGCCGC AACTCCGACG AATCTCAAG. 119 TAACTGACTC TCTCCTCGAT TCCCGTGCAG CAATTTACTT TCATACAACT TTCAAATCTA 31150 .......... .......... .......... .......... .......... .......... 119 TACAGTTTCA GTCAATATTC ACGTATTTCT ATTGGGTTCT AATTGAATTG TTTTTCATCG 31090 .......... .......... .......... .......... .......... .......... 119 CAGATCATTG ATCTATATGT CATCTTTGCG ATCTCTACTG CCTTAATTCA GGTATTTACT 31030 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ...ATCATTG ATCTATATGT CATCTTTGCG ATCTCTACTG CCTTAATTCA G......... 167 TAACAACTTT GCTGTCATTG ATCCATTTTC TGTATGTATG TATCTTATGG GGTCAATCTT 30970 .......... .......... .......... .......... .......... .......... 167 ATTGCTATAG ATCTGTAATT ATTATGTTCT TACTGTGGTT GTATTGGTAA AATTTTGGAT 30910 .......... .......... .......... .......... .......... .......... 167 GATCCATGTT CTCATAAGCT GTTAACTTTC TAATGTCCTT CGAAATTTTT ATTGAAAATG 30850 .......... .......... .......... .......... .......... .......... 167 TATGTTATGG GGTTTGAATA CTGATGGCTT AATGATGTCA GTTTAAGCAT TACCTAGATT 30790 .......... .......... .......... .......... .......... .......... 167 GATTTGATCT TGGTCTAATG CTTGTTTCAA TTGAGCATCT GATGCATTAG AGATATGCTT 30730 .......... .......... .......... .......... .......... .......... 167 TTGATGCTAA TGGCGAAGTG GCTGAGGCAT AATTTTTTTG GGAAGAATGT ATTATAAGTA 30670 .......... .......... .......... .......... .......... .......... 167 GAAAGTGGAG TTTGGGGCGG AGTATGTTTT ATGCTTTGAG GGGTATTATC TTTTATTCTG 30610 .......... .......... .......... .......... .......... .......... 167 TAAAGAAGAT TCAAATTCAA TCCTTCAATT GTTCAAACAA CACCAATAAG GTTAGATAGT 30550 .......... .......... .......... .......... .......... .......... 167 ATTTATTATG AGAATCTGTC ATTTTGGTTT GTTGTGAATA ATTAGCCTAA TCAGAGCTAA 30490 .......... .......... .......... .......... .......... .......... 167 TATGGGAGGT CTAGAAGGTC ACTGTTCCCT CTGTACATCC AATGAAGAGT CATTTGGTTT 30430 .......... .......... .......... .......... .......... .......... 167 GAGTCAGTTC CGTCATGAAT TTTGACGTTA CAGTCTGCCA ACGTGATAGT CACCTTTCAT 30370 .......... .......... .......... .......... .......... .......... 167 GAATTTTCAT AGTAGTTACT ATCCAATTCC TCTAATCCTT TTTTTATAAA TCAAAATGAT 30310 .......... .......... .......... .......... .......... .......... 167 TTCATTAATA ACACCAAGAG GGTATCACCA TCCAACCATC TCTTCTATAT AAAGTATCCC 30250 .......... .......... .......... .......... .......... .......... 167 CTTTTCAGTA AATAAAATGG AAATAAAGGT CTCTTGTCAC CTCATAGTAG ACTCTCTAAT 30190 .......... .......... .......... .......... .......... .......... 167 CCTCCAAAAA GTTCTTCTGT TCCCTTATCT CCACATCAAC CAAAGACATA AAGGGGAAGC 30130 .......... .......... .......... .......... .......... .......... 167 CACTCTACAT GTCCTTCCAG CATCTATTTC AGGTCTCCAC CTCTCCAATG TTCCTGTCAG 30070 .......... .......... .......... .......... .......... .......... 167 ACTCACAGAA TTAGGCTGAT ATTTGACATG GGATGTACCG ACAATAGTTC CATTGTGAAC 30010 .......... .......... .......... .......... .......... .......... 167 TAATTATAAC CATCTCCTTG TCAAGCATCT GCTGTTAAAG GTGATTTTCA ACTCTGCATA 29950 .......... .......... .......... .......... .......... .......... 167 CCATGTGAAG AAAGTTAGTT TCTTTGGTAC CTTTTTCTCC CATACTGATC TCTATTTTTT 29890 .......... .......... .......... .......... .......... .......... 167 TAAAAAATCA GCAACTGCGA AAGACAATCA TAATACGATT CTAAGGCGGT GATCTTTTCC 29830 .......... .......... .......... .......... .......... .......... 167 ACATCACTCT ATCTTCTTCC CAAAGCAGTC ATGTTTACAT CATCCGTTTT CCACTCTTGT 29770 .......... .......... .......... .......... .......... .......... 167 ATGTATCTCT AAAATAAAAT TTGACAATAC TTGGCTCCCT TCTCTTCTGA GGAGTTTGTC 29710 .......... .......... .......... .......... .......... .......... 167 TGCTGTTGCT TCTTTGTCAC TATCCTTTAG AAGTTGGATC CGAATACCAT GCATCCTACC 29650 .......... .......... .......... .......... .......... .......... 167 AATGTTGGAT TTGGTTACAT ATCCTTACCT TACCTTACCA TACAACCAAT GAATTTGGAA 29590 .......... .......... .......... .......... .......... .......... 167 AATTCATCCT TCCCTTCCTG TTTCTTCTCT GTAAGCTGCA TTACGATGTA ATACCTCCCA 29530 .......... .......... .......... .......... .......... .......... 167 TGGGAACCAT CAATTTTGAT GACACCAGCT TCTAGTAACA ATCACCTTCA TCCATAATGT 29470 .......... .......... .......... .......... .......... .......... 167 ATCCATTTGA GTCACACACA TCTAAACTAC TTTTCCTGAA GGATTTGATT AAATATTACT 29410 .......... .......... .......... .......... .......... .......... 167 CAGGTCACCC AACTCTAGAG GGGCTATCAC CTTATCCTAT TCTACGAATG ATATCATTTC 29350 .......... .......... .......... .......... .......... .......... 167 TCCCCCTTTG TGTCATATCA TTAAAAACTC ATTAATTTTT CAGCTTTTCT TTTCCAAGTG 29290 .......... .......... .......... .......... .......... .......... 167 AGAGGGATAG TGAATAATGA CATAAAATAA GTTTACAGGT AAGTATCAAC TTGGTGAGGG 29230 .......... .......... .......... .......... .......... .......... 167 TGATCTTTTC TCCTCTTGAT AAATACTGCA TCTTCCACTT GTCCAATCTC TTTTCAATCT 29170 .......... .......... .......... .......... .......... .......... 167 TGTTGAATTA CTGGTCGCCG GAGTTCCAGT ATCTTTTAAC AATTCTCCTC CTATATGGTC 29110 .......... .......... .......... .......... .......... .......... 167 GTGTTGATTC TTGATTCATT ATAAAAAACA TGATTTCTAT GAAGCATGCT AAACCAGCTC 29050 .......... .......... .......... .......... .......... .......... 167 CTATTAACTA TGTTGCTCCG ACTCTTAAAA AATGTCAATG GGTGGTTGTC AGATTCTCCA 28990 .......... .......... .......... .......... .......... .......... 167 AAAGTTGTGT ATTTCTTGTA AAATTCGACA CGAGTGCGGC ATCGAAAGTG AAGTGTCCGT 28930 .......... .......... .......... .......... .......... .......... 167 GAAACTTAGC CTATTAGTCA GTGGTGCCAT TCCGGCTCTT TTACCTGCTC CTTGCAACTT 28870 .......... .......... .......... .......... .......... .......... 167 TCTGTTCTTT TGCAGTGATG GACATTAAGG ATTGGGCAAA CCGTACCTCT GCTAAAGATA 28810 .......... .......... .......... .......... .......... .......... 167 GTGCTTACAT AATCAGATAT GACGCCCAGA AACATTGTTA GACTATCACA GCCCAAATTG 28750 .......... .......... .......... .......... .......... .......... 167 CTGAAAAAGA TCTTTAACCT ATTTTGGCAA AATTCTCATA TTTATTTGCC GATTTCAGTT 28690 .......... .......... .......... .......... .......... .......... 167 TGTATTATTG CCAAGGAGCA CTCCTTTTAC ACAAGTCACT ACTTTCTTTT TCTTTGTTAT 28630 .......... .......... .......... .......... .......... .......... 167 CCTATTCTTC CTAAGCTCTT ATCTCTGTAA AGTCATTGCA AACACAATGA CGTTGTGTGA 28570 .......... .......... .......... .......... .......... .......... 167 GAAAGGATCA TTTTCCTGTA ATTTGTTATT TGACTGTGCT TTCTTATGGG AAGGCAAATA 28510 .......... .......... .......... .......... .......... .......... 167 TAATGTGCCA CTCTCACAAG GCAGCAATTT GCCTGTGTAA ATAGCTCCTT TGCTAATTCA 28450 .......... .......... .......... .......... .......... .......... 167 TTTGTTGCCA ATTTGAAGAG TAAAAACATG ATTCAATGTC TGAGAATCAA GATATTTTTG 28390 .......... .......... .......... .......... .......... .......... 167 CTTGATTTGT ACAATTATCT GTTTGATGGT TGACGTATTT TTCACTTCTA CTGGCAACTC 28330 .......... .......... .......... .......... .......... .......... 167 AGGTGGTATA CATGGCTATT GTTGGATCAT TTCCATTCAA CTCTTTTCTC TCTGGGGTGC 28270 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGGTATA CATGGCTATT GTTGGATCAT TTCCATTCAA CTCTTTTCTC TCTGGGGTGC 225 TTTCTTGTAT TGGCACAGCA GTCCTTGCTG GTGAGCTTGA GTGGTCTATT TAGATGCACT 28210 |||||||||| |||||||||| |||||||||| TTTCTTGTAT TGGCACAGCA GTCCTTGCTG .......... .......... .......... 255 CCATTTTTGA GAAAACGTTT ATTTGAAATG ATTCATTAAT ATCTTTCTTA CAGTTTGTCT 28150 ||||||| .......... .......... .......... .......... .......... ...TTTGTCT 262 TCGGATCCAA GTAAACAAAG AAAACAAGGA ATTCAAGGTA AGCTTTCTTG GGATATGATC 28090 |||||||||| |||||||||| |||||||||| ||||||| TCGGATCCAA GTAAACAAAG AAAACAAGGA ATTCAAG... .......... .......... 299 TTCCATTTTA CAGTTTTACC TTGAATCTCC CCTCTAATTT AGTTGTGTTA AAATATGTTG 28030 .......... .......... .......... .......... .......... .......... 299 CGACGTCATA GATTATCAAT GAATGTGTAG CATGTCATGC ACTTCTAGTT ATGCGGTCTC 27970 .......... .......... .......... .......... .......... .......... 299 TTCCTAGAAG AAGAGAAATG TAACTTGAGG CAGCTGGGCT TATGTTTGTT TTTTCCTTTC 27910 .......... .......... .......... .......... .......... .......... 299 AAATTACTAG TGCTTACAGA GTATGTCAAT GAATCTCATT TACGTTTGGT CCACCATTGC 27850 .......... .......... .......... .......... .......... .......... 299 AGGATTTGCC TCCGGAACGT GCTTTTGCAG ATTTTGTTCT CTGCAATTTA GTGCTCCATT 27790 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GATTTGCC TCCGGAACGT GCTTTTGCAG ATTTTGTTCT CTGCAATTTA GTGCTCCATT 357 TGGTGATCAT GAACTTTCTT GGCTAGATTG AGGCACCAAA TCTTGAAAAT GTTGCTCTTA 27730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGATCAT GAACTTTCTT GGCTAGATTG AGGCACCAAA TCTTGAAAAT GTTGCTCTTA 417 CAAATCTTGG TGATTTTTAT GTAAGAATAA TATAGAGTCA ATCGTAAAGG ATTTTGTTAG 27670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCTTGG TGATTTTTAT GTAAGAATAA TATAGAGTCA ATCGTAAAGG ATTTTGTTAG 477 GCTTTCGGAA ATATTAAGTT TCTCATGCAT GAAACTATTT TACATTTATG AATCTTATAT 27610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTCGGAA ATATTAAGTT TCTCATGCAT GAAACTATTT TACATTTATG AATCTTATAT 537 GAGTATTAGT AAGTAGACAA 27590 |||||||||| || | | || GAGTATTAGT AAAAAAAAAA 557 hqPGS_C08HBa0320P23.1-_SGN-E339161+ (31329 31211,31086 31039,28327 28240,28156 28113,27847 27590) ******************************************************************************** EST sequence 97 +strand 469 n (File: SGN-E341634+) 1 AACTCCGACG AATCTCAAGA TCATTGATCT ATATGTCATC TTTGCGATCT CTACTGCCTT 61 AATTCAGGTG GTATACATGG CTATTGTTGG ATCATTTCCA TTCAACTCTT TTCTCTCTGG 121 GGTGCTTTCT TGTATTGGCA CAGCAGTCCT TGCTGTTTGT CTTCGGATCC AAGTAAACAA 181 AGAAAACAAG GAATTCAAGG ATTTGCCTCC GGAACGTGCT TTTGCAGATT TTGTTCTCTG 241 CAATTTAGTG CTCCATTTGG TGATCATGAA CTTTCTTGGC TAGATTGAGG CACCAAATCT 301 TGAAAATGTT GCTCTTACAA ATCTTGGTGA TTTTTATGTA AGAATAATAT AGAGTCAATC 361 GTAAAGGATT TTGTTAGGCT TTCGGAAATA TTAAGTTTCT CATGCATGAA ACTATTTTAC 421 ATTTATGAAT CTTATATGAG TATTAGTAAG TAGACAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 31858 to 26860): Exon 1 31229 31211 ( 19 n); cDNA 1 19 ( 19 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 0), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 20 67 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 68 155 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 156 199 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27591 ( 257 n); cDNA 200 456 ( 257 n); score: 1.000 PPA cDNA 457 469 MATCH C08HBa0320P23.1- SGN-E341634+ 1.000 456 0.972 C PGS_C08HBa0320P23.1-_SGN-E341634+ (31229 31211,31086 31039,28327 28240,28156 28113,27847 27591) Alignment (genomic DNA sequence = upper lines): AACTCCGACG AATCTCAAGG TAACTGACTC TCTCCTCGAT TCCCGTGCAG CAATTTACTT 31170 |||||||||| ||||||||| AACTCCGACG AATCTCAAG. .......... .......... .......... .......... 19 TCATACAACT TTCAAATCTA TACAGTTTCA GTCAATATTC ACGTATTTCT ATTGGGTTCT 31110 .......... .......... .......... .......... .......... .......... 19 AATTGAATTG TTTTTCATCG CAGATCATTG ATCTATATGT CATCTTTGCG ATCTCTACTG 31050 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATCATTG ATCTATATGT CATCTTTGCG ATCTCTACTG 56 CCTTAATTCA GGTATTTACT TAACAACTTT GCTGTCATTG ATCCATTTTC TGTATGTATG 30990 |||||||||| | CCTTAATTCA G......... .......... .......... .......... .......... 67 TATCTTATGG GGTCAATCTT ATTGCTATAG ATCTGTAATT ATTATGTTCT TACTGTGGTT 30930 .......... .......... .......... .......... .......... .......... 67 GTATTGGTAA AATTTTGGAT GATCCATGTT CTCATAAGCT GTTAACTTTC TAATGTCCTT 30870 .......... .......... .......... .......... .......... .......... 67 CGAAATTTTT ATTGAAAATG TATGTTATGG GGTTTGAATA CTGATGGCTT AATGATGTCA 30810 .......... .......... .......... .......... .......... .......... 67 GTTTAAGCAT TACCTAGATT GATTTGATCT TGGTCTAATG CTTGTTTCAA TTGAGCATCT 30750 .......... .......... .......... .......... .......... .......... 67 GATGCATTAG AGATATGCTT TTGATGCTAA TGGCGAAGTG GCTGAGGCAT AATTTTTTTG 30690 .......... .......... .......... .......... .......... .......... 67 GGAAGAATGT ATTATAAGTA GAAAGTGGAG TTTGGGGCGG AGTATGTTTT ATGCTTTGAG 30630 .......... .......... .......... .......... .......... .......... 67 GGGTATTATC TTTTATTCTG TAAAGAAGAT TCAAATTCAA TCCTTCAATT GTTCAAACAA 30570 .......... .......... .......... .......... .......... .......... 67 CACCAATAAG GTTAGATAGT ATTTATTATG AGAATCTGTC ATTTTGGTTT GTTGTGAATA 30510 .......... .......... .......... .......... .......... .......... 67 ATTAGCCTAA TCAGAGCTAA TATGGGAGGT CTAGAAGGTC ACTGTTCCCT CTGTACATCC 30450 .......... .......... .......... .......... .......... .......... 67 AATGAAGAGT CATTTGGTTT GAGTCAGTTC CGTCATGAAT TTTGACGTTA CAGTCTGCCA 30390 .......... .......... .......... .......... .......... .......... 67 ACGTGATAGT CACCTTTCAT GAATTTTCAT AGTAGTTACT ATCCAATTCC TCTAATCCTT 30330 .......... .......... .......... .......... .......... .......... 67 TTTTTATAAA TCAAAATGAT TTCATTAATA ACACCAAGAG GGTATCACCA TCCAACCATC 30270 .......... .......... .......... .......... .......... .......... 67 TCTTCTATAT AAAGTATCCC CTTTTCAGTA AATAAAATGG AAATAAAGGT CTCTTGTCAC 30210 .......... .......... .......... .......... .......... .......... 67 CTCATAGTAG ACTCTCTAAT CCTCCAAAAA GTTCTTCTGT TCCCTTATCT CCACATCAAC 30150 .......... .......... .......... .......... .......... .......... 67 CAAAGACATA AAGGGGAAGC CACTCTACAT GTCCTTCCAG CATCTATTTC AGGTCTCCAC 30090 .......... .......... .......... .......... .......... .......... 67 CTCTCCAATG TTCCTGTCAG ACTCACAGAA TTAGGCTGAT ATTTGACATG GGATGTACCG 30030 .......... .......... .......... .......... .......... .......... 67 ACAATAGTTC CATTGTGAAC TAATTATAAC CATCTCCTTG TCAAGCATCT GCTGTTAAAG 29970 .......... .......... .......... .......... .......... .......... 67 GTGATTTTCA ACTCTGCATA CCATGTGAAG AAAGTTAGTT TCTTTGGTAC CTTTTTCTCC 29910 .......... .......... .......... .......... .......... .......... 67 CATACTGATC TCTATTTTTT TAAAAAATCA GCAACTGCGA AAGACAATCA TAATACGATT 29850 .......... .......... .......... .......... .......... .......... 67 CTAAGGCGGT GATCTTTTCC ACATCACTCT ATCTTCTTCC CAAAGCAGTC ATGTTTACAT 29790 .......... .......... .......... .......... .......... .......... 67 CATCCGTTTT CCACTCTTGT ATGTATCTCT AAAATAAAAT TTGACAATAC TTGGCTCCCT 29730 .......... .......... .......... .......... .......... .......... 67 TCTCTTCTGA GGAGTTTGTC TGCTGTTGCT TCTTTGTCAC TATCCTTTAG AAGTTGGATC 29670 .......... .......... .......... .......... .......... .......... 67 CGAATACCAT GCATCCTACC AATGTTGGAT TTGGTTACAT ATCCTTACCT TACCTTACCA 29610 .......... .......... .......... .......... .......... .......... 67 TACAACCAAT GAATTTGGAA AATTCATCCT TCCCTTCCTG TTTCTTCTCT GTAAGCTGCA 29550 .......... .......... .......... .......... .......... .......... 67 TTACGATGTA ATACCTCCCA TGGGAACCAT CAATTTTGAT GACACCAGCT TCTAGTAACA 29490 .......... .......... .......... .......... .......... .......... 67 ATCACCTTCA TCCATAATGT ATCCATTTGA GTCACACACA TCTAAACTAC TTTTCCTGAA 29430 .......... .......... .......... .......... .......... .......... 67 GGATTTGATT AAATATTACT CAGGTCACCC AACTCTAGAG GGGCTATCAC CTTATCCTAT 29370 .......... .......... .......... .......... .......... .......... 67 TCTACGAATG ATATCATTTC TCCCCCTTTG TGTCATATCA TTAAAAACTC ATTAATTTTT 29310 .......... .......... .......... .......... .......... .......... 67 CAGCTTTTCT TTTCCAAGTG AGAGGGATAG TGAATAATGA CATAAAATAA GTTTACAGGT 29250 .......... .......... .......... .......... .......... .......... 67 AAGTATCAAC TTGGTGAGGG TGATCTTTTC TCCTCTTGAT AAATACTGCA TCTTCCACTT 29190 .......... .......... .......... .......... .......... .......... 67 GTCCAATCTC TTTTCAATCT TGTTGAATTA CTGGTCGCCG GAGTTCCAGT ATCTTTTAAC 29130 .......... .......... .......... .......... .......... .......... 67 AATTCTCCTC CTATATGGTC GTGTTGATTC TTGATTCATT ATAAAAAACA TGATTTCTAT 29070 .......... .......... .......... .......... .......... .......... 67 GAAGCATGCT AAACCAGCTC CTATTAACTA TGTTGCTCCG ACTCTTAAAA AATGTCAATG 29010 .......... .......... .......... .......... .......... .......... 67 GGTGGTTGTC AGATTCTCCA AAAGTTGTGT ATTTCTTGTA AAATTCGACA CGAGTGCGGC 28950 .......... .......... .......... .......... .......... .......... 67 ATCGAAAGTG AAGTGTCCGT GAAACTTAGC CTATTAGTCA GTGGTGCCAT TCCGGCTCTT 28890 .......... .......... .......... .......... .......... .......... 67 TTACCTGCTC CTTGCAACTT TCTGTTCTTT TGCAGTGATG GACATTAAGG ATTGGGCAAA 28830 .......... .......... .......... .......... .......... .......... 67 CCGTACCTCT GCTAAAGATA GTGCTTACAT AATCAGATAT GACGCCCAGA AACATTGTTA 28770 .......... .......... .......... .......... .......... .......... 67 GACTATCACA GCCCAAATTG CTGAAAAAGA TCTTTAACCT ATTTTGGCAA AATTCTCATA 28710 .......... .......... .......... .......... .......... .......... 67 TTTATTTGCC GATTTCAGTT TGTATTATTG CCAAGGAGCA CTCCTTTTAC ACAAGTCACT 28650 .......... .......... .......... .......... .......... .......... 67 ACTTTCTTTT TCTTTGTTAT CCTATTCTTC CTAAGCTCTT ATCTCTGTAA AGTCATTGCA 28590 .......... .......... .......... .......... .......... .......... 67 AACACAATGA CGTTGTGTGA GAAAGGATCA TTTTCCTGTA ATTTGTTATT TGACTGTGCT 28530 .......... .......... .......... .......... .......... .......... 67 TTCTTATGGG AAGGCAAATA TAATGTGCCA CTCTCACAAG GCAGCAATTT GCCTGTGTAA 28470 .......... .......... .......... .......... .......... .......... 67 ATAGCTCCTT TGCTAATTCA TTTGTTGCCA ATTTGAAGAG TAAAAACATG ATTCAATGTC 28410 .......... .......... .......... .......... .......... .......... 67 TGAGAATCAA GATATTTTTG CTTGATTTGT ACAATTATCT GTTTGATGGT TGACGTATTT 28350 .......... .......... .......... .......... .......... .......... 67 TTCACTTCTA CTGGCAACTC AGGTGGTATA CATGGCTATT GTTGGATCAT TTCCATTCAA 28290 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTGGTATA CATGGCTATT GTTGGATCAT TTCCATTCAA 105 CTCTTTTCTC TCTGGGGTGC TTTCTTGTAT TGGCACAGCA GTCCTTGCTG GTGAGCTTGA 28230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTTCTC TCTGGGGTGC TTTCTTGTAT TGGCACAGCA GTCCTTGCTG .......... 155 GTGGTCTATT TAGATGCACT CCATTTTTGA GAAAACGTTT ATTTGAAATG ATTCATTAAT 28170 .......... .......... .......... .......... .......... .......... 155 ATCTTTCTTA CAGTTTGTCT TCGGATCCAA GTAAACAAAG AAAACAAGGA ATTCAAGGTA 28110 ||||||| |||||||||| |||||||||| |||||||||| ||||||| .......... ...TTTGTCT TCGGATCCAA GTAAACAAAG AAAACAAGGA ATTCAAG... 199 AGCTTTCTTG GGATATGATC TTCCATTTTA CAGTTTTACC TTGAATCTCC CCTCTAATTT 28050 .......... .......... .......... .......... .......... .......... 199 AGTTGTGTTA AAATATGTTG CGACGTCATA GATTATCAAT GAATGTGTAG CATGTCATGC 27990 .......... .......... .......... .......... .......... .......... 199 ACTTCTAGTT ATGCGGTCTC TTCCTAGAAG AAGAGAAATG TAACTTGAGG CAGCTGGGCT 27930 .......... .......... .......... .......... .......... .......... 199 TATGTTTGTT TTTTCCTTTC AAATTACTAG TGCTTACAGA GTATGTCAAT GAATCTCATT 27870 .......... .......... .......... .......... .......... .......... 199 TACGTTTGGT CCACCATTGC AGGATTTGCC TCCGGAACGT GCTTTTGCAG ATTTTGTTCT 27810 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GATTTGCC TCCGGAACGT GCTTTTGCAG ATTTTGTTCT 237 CTGCAATTTA GTGCTCCATT TGGTGATCAT GAACTTTCTT GGCTAGATTG AGGCACCAAA 27750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAATTTA GTGCTCCATT TGGTGATCAT GAACTTTCTT GGCTAGATTG AGGCACCAAA 297 TCTTGAAAAT GTTGCTCTTA CAAATCTTGG TGATTTTTAT GTAAGAATAA TATAGAGTCA 27690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAAAAT GTTGCTCTTA CAAATCTTGG TGATTTTTAT GTAAGAATAA TATAGAGTCA 357 ATCGTAAAGG ATTTTGTTAG GCTTTCGGAA ATATTAAGTT TCTCATGCAT GAAACTATTT 27630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTAAAGG ATTTTGTTAG GCTTTCGGAA ATATTAAGTT TCTCATGCAT GAAACTATTT 417 TACATTTATG AATCTTATAT GAGTATTAGT AAGTAGACA 27591 |||||||||| |||||||||| |||||||||| ||||||||| TACATTTATG AATCTTATAT GAGTATTAGT AAGTAGACA 456 hqPGS_C08HBa0320P23.1-_SGN-E341634+ (31229 31211,31086 31039,28327 28240,28156 28113,27847 27591) ******************************************************************************** EST sequence 113 +strand 481 n (File: SGN-E309232+) 1 TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC AAAGTCGTCG GCGACCAAAG 61 ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC CGCAACTCCG ACGAATCTCA 121 AGATCATTGA TCTATATGTC ATCTTTGCGA TCTCTACTGC CTTAATTCAG GTGGTATACA 181 TGGCTATTGT TGGATCATTT CCATTCAACT CTTTTCTCTC TGGGGTGCTT TCTTGTATTG 241 GCACAGCAGT CCTTGCTGTT TGTCTTCGGA TCCAAGTAAA CAAAGAAAAC AAGGAATTCA 301 AGGATTTGCC TCCGGAACGT GCTTTTGCAG ATTTTGTTCT CTGCAATTTA GTGCTCCATT 361 TGGTGATCAT GAACTTTCTT GGCTAGATTG AGGCACCAAA TCTTGAAAAT GTTGCTCTTA 421 CAAATCTTGG TGATTTTTAT GTAAGAATAA TATAGAGTCA ATCGTAAAGG AAAAAAAAAA 481 A Predicted gene structure (within gDNA segment 31932 to 26969): Exon 1 31332 31211 ( 122 n); cDNA 1 122 ( 122 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 123 170 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 171 258 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 259 302 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27680 ( 168 n); cDNA 303 470 ( 168 n); score: 1.000 PPA cDNA 471 481 MATCH C08HBa0320P23.1- SGN-E309232+ 1.000 470 0.977 C PGS_C08HBa0320P23.1-_SGN-E309232+ (31332 31211,31086 31039,28327 28240,28156 28113,27847 27680) Alignment (genomic DNA sequence = upper lines): TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC AAAGTCGTCG GCGACCAAAG 31273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC AAAGTCGTCG GCGACCAAAG 60 ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC CGCAACTCCG ACGAATCTCA 31213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC CGCAACTCCG ACGAATCTCA 120 AGGTAACTGA CTCTCTCCTC GATTCCCGTG CAGCAATTTA CTTTCATACA ACTTTCAAAT 31153 || AG........ .......... .......... .......... .......... .......... 122 CTATACAGTT TCAGTCAATA TTCACGTATT TCTATTGGGT TCTAATTGAA TTGTTTTTCA 31093 .......... .......... .......... .......... .......... .......... 122 TCGCAGATCA TTGATCTATA TGTCATCTTT GCGATCTCTA CTGCCTTAAT TCAGGTATTT 31033 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ......ATCA TTGATCTATA TGTCATCTTT GCGATCTCTA CTGCCTTAAT TCAG...... 170 ACTTAACAAC TTTGCTGTCA TTGATCCATT TTCTGTATGT ATGTATCTTA TGGGGTCAAT 30973 .......... .......... .......... .......... .......... .......... 170 CTTATTGCTA TAGATCTGTA ATTATTATGT TCTTACTGTG GTTGTATTGG TAAAATTTTG 30913 .......... .......... .......... .......... .......... .......... 170 GATGATCCAT GTTCTCATAA GCTGTTAACT TTCTAATGTC CTTCGAAATT TTTATTGAAA 30853 .......... .......... .......... .......... .......... .......... 170 ATGTATGTTA TGGGGTTTGA ATACTGATGG CTTAATGATG TCAGTTTAAG CATTACCTAG 30793 .......... .......... .......... .......... .......... .......... 170 ATTGATTTGA TCTTGGTCTA ATGCTTGTTT CAATTGAGCA TCTGATGCAT TAGAGATATG 30733 .......... .......... .......... .......... .......... .......... 170 CTTTTGATGC TAATGGCGAA GTGGCTGAGG CATAATTTTT TTGGGAAGAA TGTATTATAA 30673 .......... .......... .......... .......... .......... .......... 170 GTAGAAAGTG GAGTTTGGGG CGGAGTATGT TTTATGCTTT GAGGGGTATT ATCTTTTATT 30613 .......... .......... .......... .......... .......... .......... 170 CTGTAAAGAA GATTCAAATT CAATCCTTCA ATTGTTCAAA CAACACCAAT AAGGTTAGAT 30553 .......... .......... .......... .......... .......... .......... 170 AGTATTTATT ATGAGAATCT GTCATTTTGG TTTGTTGTGA ATAATTAGCC TAATCAGAGC 30493 .......... .......... .......... .......... .......... .......... 170 TAATATGGGA GGTCTAGAAG GTCACTGTTC CCTCTGTACA TCCAATGAAG AGTCATTTGG 30433 .......... .......... .......... .......... .......... .......... 170 TTTGAGTCAG TTCCGTCATG AATTTTGACG TTACAGTCTG CCAACGTGAT AGTCACCTTT 30373 .......... .......... .......... .......... .......... .......... 170 CATGAATTTT CATAGTAGTT ACTATCCAAT TCCTCTAATC CTTTTTTTAT AAATCAAAAT 30313 .......... .......... .......... .......... .......... .......... 170 GATTTCATTA ATAACACCAA GAGGGTATCA CCATCCAACC ATCTCTTCTA TATAAAGTAT 30253 .......... .......... .......... .......... .......... .......... 170 CCCCTTTTCA GTAAATAAAA TGGAAATAAA GGTCTCTTGT CACCTCATAG TAGACTCTCT 30193 .......... .......... .......... .......... .......... .......... 170 AATCCTCCAA AAAGTTCTTC TGTTCCCTTA TCTCCACATC AACCAAAGAC ATAAAGGGGA 30133 .......... .......... .......... .......... .......... .......... 170 AGCCACTCTA CATGTCCTTC CAGCATCTAT TTCAGGTCTC CACCTCTCCA ATGTTCCTGT 30073 .......... .......... .......... .......... .......... .......... 170 CAGACTCACA GAATTAGGCT GATATTTGAC ATGGGATGTA CCGACAATAG TTCCATTGTG 30013 .......... .......... .......... .......... .......... .......... 170 AACTAATTAT AACCATCTCC TTGTCAAGCA TCTGCTGTTA AAGGTGATTT TCAACTCTGC 29953 .......... .......... .......... .......... .......... .......... 170 ATACCATGTG AAGAAAGTTA GTTTCTTTGG TACCTTTTTC TCCCATACTG ATCTCTATTT 29893 .......... .......... .......... .......... .......... .......... 170 TTTTAAAAAA TCAGCAACTG CGAAAGACAA TCATAATACG ATTCTAAGGC GGTGATCTTT 29833 .......... .......... .......... .......... .......... .......... 170 TCCACATCAC TCTATCTTCT TCCCAAAGCA GTCATGTTTA CATCATCCGT TTTCCACTCT 29773 .......... .......... .......... .......... .......... .......... 170 TGTATGTATC TCTAAAATAA AATTTGACAA TACTTGGCTC CCTTCTCTTC TGAGGAGTTT 29713 .......... .......... .......... .......... .......... .......... 170 GTCTGCTGTT GCTTCTTTGT CACTATCCTT TAGAAGTTGG ATCCGAATAC CATGCATCCT 29653 .......... .......... .......... .......... .......... .......... 170 ACCAATGTTG GATTTGGTTA CATATCCTTA CCTTACCTTA CCATACAACC AATGAATTTG 29593 .......... .......... .......... .......... .......... .......... 170 GAAAATTCAT CCTTCCCTTC CTGTTTCTTC TCTGTAAGCT GCATTACGAT GTAATACCTC 29533 .......... .......... .......... .......... .......... .......... 170 CCATGGGAAC CATCAATTTT GATGACACCA GCTTCTAGTA ACAATCACCT TCATCCATAA 29473 .......... .......... .......... .......... .......... .......... 170 TGTATCCATT TGAGTCACAC ACATCTAAAC TACTTTTCCT GAAGGATTTG ATTAAATATT 29413 .......... .......... .......... .......... .......... .......... 170 ACTCAGGTCA CCCAACTCTA GAGGGGCTAT CACCTTATCC TATTCTACGA ATGATATCAT 29353 .......... .......... .......... .......... .......... .......... 170 TTCTCCCCCT TTGTGTCATA TCATTAAAAA CTCATTAATT TTTCAGCTTT TCTTTTCCAA 29293 .......... .......... .......... .......... .......... .......... 170 GTGAGAGGGA TAGTGAATAA TGACATAAAA TAAGTTTACA GGTAAGTATC AACTTGGTGA 29233 .......... .......... .......... .......... .......... .......... 170 GGGTGATCTT TTCTCCTCTT GATAAATACT GCATCTTCCA CTTGTCCAAT CTCTTTTCAA 29173 .......... .......... .......... .......... .......... .......... 170 TCTTGTTGAA TTACTGGTCG CCGGAGTTCC AGTATCTTTT AACAATTCTC CTCCTATATG 29113 .......... .......... .......... .......... .......... .......... 170 GTCGTGTTGA TTCTTGATTC ATTATAAAAA ACATGATTTC TATGAAGCAT GCTAAACCAG 29053 .......... .......... .......... .......... .......... .......... 170 CTCCTATTAA CTATGTTGCT CCGACTCTTA AAAAATGTCA ATGGGTGGTT GTCAGATTCT 28993 .......... .......... .......... .......... .......... .......... 170 CCAAAAGTTG TGTATTTCTT GTAAAATTCG ACACGAGTGC GGCATCGAAA GTGAAGTGTC 28933 .......... .......... .......... .......... .......... .......... 170 CGTGAAACTT AGCCTATTAG TCAGTGGTGC CATTCCGGCT CTTTTACCTG CTCCTTGCAA 28873 .......... .......... .......... .......... .......... .......... 170 CTTTCTGTTC TTTTGCAGTG ATGGACATTA AGGATTGGGC AAACCGTACC TCTGCTAAAG 28813 .......... .......... .......... .......... .......... .......... 170 ATAGTGCTTA CATAATCAGA TATGACGCCC AGAAACATTG TTAGACTATC ACAGCCCAAA 28753 .......... .......... .......... .......... .......... .......... 170 TTGCTGAAAA AGATCTTTAA CCTATTTTGG CAAAATTCTC ATATTTATTT GCCGATTTCA 28693 .......... .......... .......... .......... .......... .......... 170 GTTTGTATTA TTGCCAAGGA GCACTCCTTT TACACAAGTC ACTACTTTCT TTTTCTTTGT 28633 .......... .......... .......... .......... .......... .......... 170 TATCCTATTC TTCCTAAGCT CTTATCTCTG TAAAGTCATT GCAAACACAA TGACGTTGTG 28573 .......... .......... .......... .......... .......... .......... 170 TGAGAAAGGA TCATTTTCCT GTAATTTGTT ATTTGACTGT GCTTTCTTAT GGGAAGGCAA 28513 .......... .......... .......... .......... .......... .......... 170 ATATAATGTG CCACTCTCAC AAGGCAGCAA TTTGCCTGTG TAAATAGCTC CTTTGCTAAT 28453 .......... .......... .......... .......... .......... .......... 170 TCATTTGTTG CCAATTTGAA GAGTAAAAAC ATGATTCAAT GTCTGAGAAT CAAGATATTT 28393 .......... .......... .......... .......... .......... .......... 170 TTGCTTGATT TGTACAATTA TCTGTTTGAT GGTTGACGTA TTTTTCACTT CTACTGGCAA 28333 .......... .......... .......... .......... .......... .......... 170 CTCAGGTGGT ATACATGGCT ATTGTTGGAT CATTTCCATT CAACTCTTTT CTCTCTGGGG 28273 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTGGT ATACATGGCT ATTGTTGGAT CATTTCCATT CAACTCTTTT CTCTCTGGGG 225 TGCTTTCTTG TATTGGCACA GCAGTCCTTG CTGGTGAGCT TGAGTGGTCT ATTTAGATGC 28213 |||||||||| |||||||||| |||||||||| ||| TGCTTTCTTG TATTGGCACA GCAGTCCTTG CTG....... .......... .......... 258 ACTCCATTTT TGAGAAAACG TTTATTTGAA ATGATTCATT AATATCTTTC TTACAGTTTG 28153 |||| .......... .......... .......... .......... .......... ......TTTG 262 TCTTCGGATC CAAGTAAACA AAGAAAACAA GGAATTCAAG GTAAGCTTTC TTGGGATATG 28093 |||||||||| |||||||||| |||||||||| |||||||||| TCTTCGGATC CAAGTAAACA AAGAAAACAA GGAATTCAAG .......... .......... 302 ATCTTCCATT TTACAGTTTT ACCTTGAATC TCCCCTCTAA TTTAGTTGTG TTAAAATATG 28033 .......... .......... .......... .......... .......... .......... 302 TTGCGACGTC ATAGATTATC AATGAATGTG TAGCATGTCA TGCACTTCTA GTTATGCGGT 27973 .......... .......... .......... .......... .......... .......... 302 CTCTTCCTAG AAGAAGAGAA ATGTAACTTG AGGCAGCTGG GCTTATGTTT GTTTTTTCCT 27913 .......... .......... .......... .......... .......... .......... 302 TTCAAATTAC TAGTGCTTAC AGAGTATGTC AATGAATCTC ATTTACGTTT GGTCCACCAT 27853 .......... .......... .......... .......... .......... .......... 302 TGCAGGATTT GCCTCCGGAA CGTGCTTTTG CAGATTTTGT TCTCTGCAAT TTAGTGCTCC 27793 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GATTT GCCTCCGGAA CGTGCTTTTG CAGATTTTGT TCTCTGCAAT TTAGTGCTCC 357 ATTTGGTGAT CATGAACTTT CTTGGCTAGA TTGAGGCACC AAATCTTGAA AATGTTGCTC 27733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGTGAT CATGAACTTT CTTGGCTAGA TTGAGGCACC AAATCTTGAA AATGTTGCTC 417 TTACAAATCT TGGTGATTTT TATGTAAGAA TAATATAGAG TCAATCGTAA AGG 27680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTACAAATCT TGGTGATTTT TATGTAAGAA TAATATAGAG TCAATCGTAA AGG 470 hqPGS_C08HBa0320P23.1-_SGN-E309232+ (31332 31211,31086 31039,28327 28240,28156 28113,27847 27680) ******************************************************************************** EST sequence 127 +strand 410 n (File: SGN-E309836+) 1 AAAAATGGCA AAGTCGTCGG CGACCAAAGA CGCCCAAGCT CTTTTCCATT CTCTCCGTTC 61 TGCTTATGCC GCAACTCCGA CGAATCTCAA GATCATTGAT CTATATGTCA TCTTTGCGAT 121 CTCTACTGCC TTAATTCAGG TGGTATACAT GGCTATTGTT GGATCATTTC CATTCAACTC 181 TTTTCTCTCT GGGGTGCTTT CTTGTATTGG CACAGCAGTC CTTGCTGTTT GTCTTCGGAT 241 CCAAGTAAAC AAAGAAAACA AGGAATTCAA GGATTTGCCT CCGGAACGTG CTTTTGCAGA 301 TTTTGTTCTC TGCAATTTAG TGCTCCATTT GGTGATCATG AACTTTCTTG GCTAGATTGA 361 GGCACCAAAT CTTGAAAATG TTGCTCTTAC AAATCTTGGT GATTTTTATG Predicted gene structure (within gDNA segment 31901 to 27099): Exon 1 31301 31211 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 92 139 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 140 227 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 228 271 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27709 ( 139 n); cDNA 272 410 ( 139 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E309836+ 1.000 410 1.000 C PGS_C08HBa0320P23.1-_SGN-E309836+ (31301 31211,31086 31039,28327 28240,28156 28113,27847 27709) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGTCGTCGG CGACCAAAGA CGCCCAAGCT CTTTTCCATT CTCTCCGTTC 31242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGTCGTCGG CGACCAAAGA CGCCCAAGCT CTTTTCCATT CTCTCCGTTC 60 TGCTTATGCC GCAACTCCGA CGAATCTCAA GGTAACTGAC TCTCTCCTCG ATTCCCGTGC 31182 |||||||||| |||||||||| |||||||||| | TGCTTATGCC GCAACTCCGA CGAATCTCAA G......... .......... .......... 91 AGCAATTTAC TTTCATACAA CTTTCAAATC TATACAGTTT CAGTCAATAT TCACGTATTT 31122 .......... .......... .......... .......... .......... .......... 91 CTATTGGGTT CTAATTGAAT TGTTTTTCAT CGCAGATCAT TGATCTATAT GTCATCTTTG 31062 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATCAT TGATCTATAT GTCATCTTTG 116 CGATCTCTAC TGCCTTAATT CAGGTATTTA CTTAACAACT TTGCTGTCAT TGATCCATTT 31002 |||||||||| |||||||||| ||| CGATCTCTAC TGCCTTAATT CAG....... .......... .......... .......... 139 TCTGTATGTA TGTATCTTAT GGGGTCAATC TTATTGCTAT AGATCTGTAA TTATTATGTT 30942 .......... .......... .......... .......... .......... .......... 139 CTTACTGTGG TTGTATTGGT AAAATTTTGG ATGATCCATG TTCTCATAAG CTGTTAACTT 30882 .......... .......... .......... .......... .......... .......... 139 TCTAATGTCC TTCGAAATTT TTATTGAAAA TGTATGTTAT GGGGTTTGAA TACTGATGGC 30822 .......... .......... .......... .......... .......... .......... 139 TTAATGATGT CAGTTTAAGC ATTACCTAGA TTGATTTGAT CTTGGTCTAA TGCTTGTTTC 30762 .......... .......... .......... .......... .......... .......... 139 AATTGAGCAT CTGATGCATT AGAGATATGC TTTTGATGCT AATGGCGAAG TGGCTGAGGC 30702 .......... .......... .......... .......... .......... .......... 139 ATAATTTTTT TGGGAAGAAT GTATTATAAG TAGAAAGTGG AGTTTGGGGC GGAGTATGTT 30642 .......... .......... .......... .......... .......... .......... 139 TTATGCTTTG AGGGGTATTA TCTTTTATTC TGTAAAGAAG ATTCAAATTC AATCCTTCAA 30582 .......... .......... .......... .......... .......... .......... 139 TTGTTCAAAC AACACCAATA AGGTTAGATA GTATTTATTA TGAGAATCTG TCATTTTGGT 30522 .......... .......... .......... .......... .......... .......... 139 TTGTTGTGAA TAATTAGCCT AATCAGAGCT AATATGGGAG GTCTAGAAGG TCACTGTTCC 30462 .......... .......... .......... .......... .......... .......... 139 CTCTGTACAT CCAATGAAGA GTCATTTGGT TTGAGTCAGT TCCGTCATGA ATTTTGACGT 30402 .......... .......... .......... .......... .......... .......... 139 TACAGTCTGC CAACGTGATA GTCACCTTTC ATGAATTTTC ATAGTAGTTA CTATCCAATT 30342 .......... .......... .......... .......... .......... .......... 139 CCTCTAATCC TTTTTTTATA AATCAAAATG ATTTCATTAA TAACACCAAG AGGGTATCAC 30282 .......... .......... .......... .......... .......... .......... 139 CATCCAACCA TCTCTTCTAT ATAAAGTATC CCCTTTTCAG TAAATAAAAT GGAAATAAAG 30222 .......... .......... .......... .......... .......... .......... 139 GTCTCTTGTC ACCTCATAGT AGACTCTCTA ATCCTCCAAA AAGTTCTTCT GTTCCCTTAT 30162 .......... .......... .......... .......... .......... .......... 139 CTCCACATCA ACCAAAGACA TAAAGGGGAA GCCACTCTAC ATGTCCTTCC AGCATCTATT 30102 .......... .......... .......... .......... .......... .......... 139 TCAGGTCTCC ACCTCTCCAA TGTTCCTGTC AGACTCACAG AATTAGGCTG ATATTTGACA 30042 .......... .......... .......... .......... .......... .......... 139 TGGGATGTAC CGACAATAGT TCCATTGTGA ACTAATTATA ACCATCTCCT TGTCAAGCAT 29982 .......... .......... .......... .......... .......... .......... 139 CTGCTGTTAA AGGTGATTTT CAACTCTGCA TACCATGTGA AGAAAGTTAG TTTCTTTGGT 29922 .......... .......... .......... .......... .......... .......... 139 ACCTTTTTCT CCCATACTGA TCTCTATTTT TTTAAAAAAT CAGCAACTGC GAAAGACAAT 29862 .......... .......... .......... .......... .......... .......... 139 CATAATACGA TTCTAAGGCG GTGATCTTTT CCACATCACT CTATCTTCTT CCCAAAGCAG 29802 .......... .......... .......... .......... .......... .......... 139 TCATGTTTAC ATCATCCGTT TTCCACTCTT GTATGTATCT CTAAAATAAA ATTTGACAAT 29742 .......... .......... .......... .......... .......... .......... 139 ACTTGGCTCC CTTCTCTTCT GAGGAGTTTG TCTGCTGTTG CTTCTTTGTC ACTATCCTTT 29682 .......... .......... .......... .......... .......... .......... 139 AGAAGTTGGA TCCGAATACC ATGCATCCTA CCAATGTTGG ATTTGGTTAC ATATCCTTAC 29622 .......... .......... .......... .......... .......... .......... 139 CTTACCTTAC CATACAACCA ATGAATTTGG AAAATTCATC CTTCCCTTCC TGTTTCTTCT 29562 .......... .......... .......... .......... .......... .......... 139 CTGTAAGCTG CATTACGATG TAATACCTCC CATGGGAACC ATCAATTTTG ATGACACCAG 29502 .......... .......... .......... .......... .......... .......... 139 CTTCTAGTAA CAATCACCTT CATCCATAAT GTATCCATTT GAGTCACACA CATCTAAACT 29442 .......... .......... .......... .......... .......... .......... 139 ACTTTTCCTG AAGGATTTGA TTAAATATTA CTCAGGTCAC CCAACTCTAG AGGGGCTATC 29382 .......... .......... .......... .......... .......... .......... 139 ACCTTATCCT ATTCTACGAA TGATATCATT TCTCCCCCTT TGTGTCATAT CATTAAAAAC 29322 .......... .......... .......... .......... .......... .......... 139 TCATTAATTT TTCAGCTTTT CTTTTCCAAG TGAGAGGGAT AGTGAATAAT GACATAAAAT 29262 .......... .......... .......... .......... .......... .......... 139 AAGTTTACAG GTAAGTATCA ACTTGGTGAG GGTGATCTTT TCTCCTCTTG ATAAATACTG 29202 .......... .......... .......... .......... .......... .......... 139 CATCTTCCAC TTGTCCAATC TCTTTTCAAT CTTGTTGAAT TACTGGTCGC CGGAGTTCCA 29142 .......... .......... .......... .......... .......... .......... 139 GTATCTTTTA ACAATTCTCC TCCTATATGG TCGTGTTGAT TCTTGATTCA TTATAAAAAA 29082 .......... .......... .......... .......... .......... .......... 139 CATGATTTCT ATGAAGCATG CTAAACCAGC TCCTATTAAC TATGTTGCTC CGACTCTTAA 29022 .......... .......... .......... .......... .......... .......... 139 AAAATGTCAA TGGGTGGTTG TCAGATTCTC CAAAAGTTGT GTATTTCTTG TAAAATTCGA 28962 .......... .......... .......... .......... .......... .......... 139 CACGAGTGCG GCATCGAAAG TGAAGTGTCC GTGAAACTTA GCCTATTAGT CAGTGGTGCC 28902 .......... .......... .......... .......... .......... .......... 139 ATTCCGGCTC TTTTACCTGC TCCTTGCAAC TTTCTGTTCT TTTGCAGTGA TGGACATTAA 28842 .......... .......... .......... .......... .......... .......... 139 GGATTGGGCA AACCGTACCT CTGCTAAAGA TAGTGCTTAC ATAATCAGAT ATGACGCCCA 28782 .......... .......... .......... .......... .......... .......... 139 GAAACATTGT TAGACTATCA CAGCCCAAAT TGCTGAAAAA GATCTTTAAC CTATTTTGGC 28722 .......... .......... .......... .......... .......... .......... 139 AAAATTCTCA TATTTATTTG CCGATTTCAG TTTGTATTAT TGCCAAGGAG CACTCCTTTT 28662 .......... .......... .......... .......... .......... .......... 139 ACACAAGTCA CTACTTTCTT TTTCTTTGTT ATCCTATTCT TCCTAAGCTC TTATCTCTGT 28602 .......... .......... .......... .......... .......... .......... 139 AAAGTCATTG CAAACACAAT GACGTTGTGT GAGAAAGGAT CATTTTCCTG TAATTTGTTA 28542 .......... .......... .......... .......... .......... .......... 139 TTTGACTGTG CTTTCTTATG GGAAGGCAAA TATAATGTGC CACTCTCACA AGGCAGCAAT 28482 .......... .......... .......... .......... .......... .......... 139 TTGCCTGTGT AAATAGCTCC TTTGCTAATT CATTTGTTGC CAATTTGAAG AGTAAAAACA 28422 .......... .......... .......... .......... .......... .......... 139 TGATTCAATG TCTGAGAATC AAGATATTTT TGCTTGATTT GTACAATTAT CTGTTTGATG 28362 .......... .......... .......... .......... .......... .......... 139 GTTGACGTAT TTTTCACTTC TACTGGCAAC TCAGGTGGTA TACATGGCTA TTGTTGGATC 28302 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGGTA TACATGGCTA TTGTTGGATC 165 ATTTCCATTC AACTCTTTTC TCTCTGGGGT GCTTTCTTGT ATTGGCACAG CAGTCCTTGC 28242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCATTC AACTCTTTTC TCTCTGGGGT GCTTTCTTGT ATTGGCACAG CAGTCCTTGC 225 TGGTGAGCTT GAGTGGTCTA TTTAGATGCA CTCCATTTTT GAGAAAACGT TTATTTGAAA 28182 || TG........ .......... .......... .......... .......... .......... 227 TGATTCATTA ATATCTTTCT TACAGTTTGT CTTCGGATCC AAGTAAACAA AGAAAACAAG 28122 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TTTGT CTTCGGATCC AAGTAAACAA AGAAAACAAG 262 GAATTCAAGG TAAGCTTTCT TGGGATATGA TCTTCCATTT TACAGTTTTA CCTTGAATCT 28062 ||||||||| GAATTCAAG. .......... .......... .......... .......... .......... 271 CCCCTCTAAT TTAGTTGTGT TAAAATATGT TGCGACGTCA TAGATTATCA ATGAATGTGT 28002 .......... .......... .......... .......... .......... .......... 271 AGCATGTCAT GCACTTCTAG TTATGCGGTC TCTTCCTAGA AGAAGAGAAA TGTAACTTGA 27942 .......... .......... .......... .......... .......... .......... 271 GGCAGCTGGG CTTATGTTTG TTTTTTCCTT TCAAATTACT AGTGCTTACA GAGTATGTCA 27882 .......... .......... .......... .......... .......... .......... 271 ATGAATCTCA TTTACGTTTG GTCCACCATT GCAGGATTTG CCTCCGGAAC GTGCTTTTGC 27822 |||||| |||||||||| |||||||||| .......... .......... .......... ....GATTTG CCTCCGGAAC GTGCTTTTGC 297 AGATTTTGTT CTCTGCAATT TAGTGCTCCA TTTGGTGATC ATGAACTTTC TTGGCTAGAT 27762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTTGTT CTCTGCAATT TAGTGCTCCA TTTGGTGATC ATGAACTTTC TTGGCTAGAT 357 TGAGGCACCA AATCTTGAAA ATGTTGCTCT TACAAATCTT GGTGATTTTT ATG 27709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGAGGCACCA AATCTTGAAA ATGTTGCTCT TACAAATCTT GGTGATTTTT ATG 410 hqPGS_C08HBa0320P23.1-_SGN-E309836+ (31301 31211,31086 31039,28327 28240,28156 28113,27847 27709) ******************************************************************************** EST sequence 89 +strand 746 n (File: SGN-E539636+) 1 GTTCAATGCT CACTTCTCAG CAGATGTTTT CACCAATATT CTTTTTCAGG ATGGTACTCT 61 TGAGGGCGTG GAGCGGGAGG TTGCCTCCTT ATTTCACCTT CCCCACAATT TTCAGCTAAT 121 AATTGATCAC GAGCTTCAAC ATGTGGTACA CCTTTTTATA TATAAATACA TACTTCATAT 181 ATTTAATATA CACACAAACA TCTTTATAAT AACATTTCAT TATAATAATA TTAAGTTCTC 241 TTTGAAATAT TTGGATTAAA AACAGTACTC CCTCCATCTG AAATTATTAG TCATGTTATG 301 CTTATCAAAA GTCAATTTAA CTAGTTTTCA AAGGTAAATT GGATCACTAT AATTCGATAT 361 TTTAAATAAA AATACTAGAT ATTCTAAAAC TATATGAAAA GTACTGTAAA TCATAATTTT 421 TTTTACATAT TAATATGATT AAAAAAATAC ATCTAATATT AATAATTTGA TTCTAAAAAT 481 AGAAATTATA ACGAACAATA ATGGAGGGAG TAATAATAAA GTTAATACAA GAATTTATCC 541 ATATACATGT AACTAAGATA AATAAACAAT CTCTATTAAA TACATGTTTT TTTTTTGTTT 601 TTGGAAAAAG TTTGTTCCGA AATTTTCGGC CAAGTAGTTT GACTAGAAAA GGAGAAAACC 661 GGAACTGTCA CAACTGCATA ACCTGAAATT CAGCCGGACA TCTTTTGGAC TTCTTTTATG 721 TGTACAATTC ATTTATATTG CTATCT Predicted gene structure (within gDNA segment 39326 to 30873): Exon 1 37282 37254 ( 29 n); cDNA 88 114 ( 27 n); score: 0.690 Intron 1 37253 37040 ( 214 n); Pd: 0.000 (s: 0), Pa: 0.147 (s: 0) Exon 2 37039 37014 ( 26 n); cDNA 115 138 ( 24 n); score: 0.692 Intron 2 37013 36633 ( 381 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 36632 36613 ( 20 n); cDNA 139 157 ( 19 n); score: 0.750 Intron 3 36612 35829 ( 784 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.65) Exon 4 35828 35780 ( 49 n); cDNA 158 205 ( 48 n); score: 0.653 Intron 4 35779 35380 ( 400 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0.50) Exon 5 35379 35140 ( 240 n); cDNA 206 453 ( 248 n); score: 0.715 Intron 5 35139 34039 (1101 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.64) Exon 6 34038 33978 ( 61 n); cDNA 454 513 ( 60 n); score: 0.631 Intron 6 33977 33620 ( 358 n); Pd: 0.900 (s: 0.60), Pa: 0.000 (s: 0) Exon 7 33619 33596 ( 24 n); cDNA 514 537 ( 24 n); score: 0.792 Intron 7 33595 33208 ( 388 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 8 33207 33143 ( 65 n); cDNA 538 602 ( 65 n); score: 0.646 MATCH C08HBa0320P23.1- SGN-E539636+ 0.689 514 0.689 C PGS_C08HBa0320P23.1-_SGN-E539636+ (37282 37254,37039 37014,36632 36613,35828 35780,35379 35140,34038 33978,33619 33596,33207 33143) Alignment (genomic DNA sequence = upper lines): CTCTTTTCAA CCATCCTAGA CAAATTACAG CCCAAAAAGT ACTGGGAGCG GAGCTAGCTC 37223 || |||| | || ||| | ||| || || CTTATTTC-A CCTTCCC-CA CAATTTTCA. .......... .......... .......... 114 TCCGGTGAAC CGATCCAAAC CTTGAATTTA TATCAAAAAT CAACTAAATA TACCTAAATT 37163 .......... .......... .......... .......... .......... .......... 114 ATTAATTTAG AATCCAATAA CTTGGGATAT ACAAGGATTA ATCCCGAACC AAATTTATAC 37103 .......... .......... .......... .......... .......... .......... 114 TGCATTTCGT TGATGGTATA AGTTAATCCT ATCAACCAAA AATGATTATA AATTTTATTG 37043 .......... .......... .......... .......... .......... .......... 114 TAGGCTTAAT ACTTGATATC TAACTTGGAA TTATAATCTC AGGACTTTAA TCCCGAATAA 36983 || |||| | ||||| | | ||| | ...GC-TAAT AATTGATCAC GAGCTTC-A. .......... .......... .......... 138 ATCCACCTAT GGAATAGAAT TCAAAACTCA TAAACCTCAA ATCACAAATA AAAGAGCATT 36923 .......... .......... .......... .......... .......... .......... 138 AGAAGTTGAG CCAAATCAAG GAATACTGAC CGAGAGCGAG AGACTTGTGA ATGACTGTAA 36863 .......... .......... .......... .......... .......... .......... 138 CTGCGCAAAG TCGTAGGAAA GAGAGCTCTA CTACTAGTGC TGCTAAGAGA AGGAGCTGAT 36803 .......... .......... .......... .......... .......... .......... 138 GTAACTTTGC AAATGGCACC GATGTTTGAG AAAGTCGCCA TAGTTTTCTC TTCCACAGTT 36743 .......... .......... .......... .......... .......... .......... 138 CACAGAGATG AGATTGAGAA GTTATCTAAT CAATGGAAGA AAATGAATAG CAAAGGCAAT 36683 .......... .......... .......... .......... .......... .......... 138 AGTTGAACTT TGGCAAAATG CTTTCTGAAA TTTGGTTTCT GTTTTGCCAG ATTTGTGGTG 36623 | |||||| .......... .......... .......... .......... .......... ACATGTGGT- 147 AAGCCTTTTT GGGTGGGGCC ATACTGGGTG CACATTTTTC TTGAATATAG CTATTAGTTA 36563 | ||||||| ACACCTTTTT .......... .......... .......... .......... .......... 157 AGTTCGATTT TATGTATTAA CTAATTTACT TAATTAATTT TTAAATATAT TAAATTATTA 36503 .......... .......... .......... .......... .......... .......... 157 ATTAAATTAA TAAAAATATT TTTATTAAGT TTTGGTCTTT AATAATTTAG TTTTTGATTT 36443 .......... .......... .......... .......... .......... .......... 157 AAATCAATTC AAGATATTCA TAAAATAAAA ATATAATTTT TTTAATAATT TAACGCGATA 36383 .......... .......... .......... .......... .......... .......... 157 AAGGATAATG TAAATTTAAG GGCAATTTTA ACATATAGCA AAAATAAAAT TTAAAATTTG 36323 .......... .......... .......... .......... .......... .......... 157 TATGTTATAG TCATAGCAAA CATATATATA TATATAGAGA GAGAGAGTTC GCTATTCATA 36263 .......... .......... .......... .......... .......... .......... 157 TACAATTGAA AGTTATGCCT ATTTCAACTA TACATATATA CAAAGAAACA ATTGTATAAT 36203 .......... .......... .......... .......... .......... .......... 157 TCGTTGGTTA CTCTTCAGAT TGTATAATTT CACTGACAGA CCATTTGTAT AAGTTGTTGT 36143 .......... .......... .......... .......... .......... .......... 157 TAGCCTCTCA ATTCAACTGC ATGTGTTTGT ATATCTGTAT AAAATTTAAA TTTGTCTACA 36083 .......... .......... .......... .......... .......... .......... 157 ATTGAATCGA ATTATATAAA ACGAGAAAGA GAGAAATTTT ATACAATTCA AATTTGTAAT 36023 .......... .......... .......... .......... .......... .......... 157 AACGAGAAAG AGAGAAAGAC ATTTGGGCAT GGGAATATAC AATTGAATCG AATTGTATAA 35963 .......... .......... .......... .......... .......... .......... 157 AACGAGAAAG AAAAAAATTA TATACAATTT GAATTTGTAT CAAACGAGAA AGAGAGAAAT 35903 .......... .......... .......... .......... .......... .......... 157 GCAAAAGAGT CTTAGGCATG GAAAATTTGT ATTGTATAAT CATAAGTGTA TCGGATGGAG 35843 .......... .......... .......... .......... .......... .......... 157 ATATATGTAT ATGCATATGT ATATACAAAT TTCTCTCGCT TAATACAAAC GGAAACACAA 35783 |||| | | ||||| | ||| | ||||| | || ||||| .......... ....ATATAT AAATACATAC TTCATATATT TAATATACAC ACAAACATC- 202 TTTGTACAAT TTTATTGTAT AAAGTGAGAG AGGCGAGCGA CAAGGAGCTA GCGAGAGAAG 35723 ||| TTT....... .......... .......... .......... .......... .......... 205 GAGAGTGGCA AGCGAGAATA TGAGGGAGAG AGGGACTGAT AAATAGTTTG TTATGTAACA 35663 .......... .......... .......... .......... .......... .......... 205 CAAATAAATC AATCGGTAGC TACTGTATTT ATTTCACTAT TAGTTTGTCA TTTTATACAA 35603 .......... .......... .......... .......... .......... .......... 205 TTATCTCTAA ATTTGAATAC TCTTATAAAA TAGACATAGC ACTATTAACT AATAGAAAAA 35543 .......... .......... .......... .......... .......... .......... 205 AATTATATAA GTGCAATACA AATAAAAAAA CAAAATAATA ATGTGAATCG AAGGCTAAAT 35483 .......... .......... .......... .......... .......... .......... 205 AGTAAATGTG TAATGTACTG ATAATAAAAT TTAATATCTA TCTAGGGAAA ATGAGTAAAT 35423 .......... .......... .......... .......... .......... .......... 205 TACTACAATT TTATTAGGTT ATTTGATAAA ACCCAATATT AAAAAAATTA AAATTCAATA 35363 | ||| | | |||| || .......... .......... .......... .......... ...ATAATAA CATTTCATTA 222 -AAAAATTAT AAAATCATTA AAGAATA-AT GACTCAATAT CATATACTTC CTTCGTTCAG 35305 || ||| | || || | |||| | | | || | || |||| | || | | TAATAATATT AAGTTCTCTT TGAAATATTT GGATTAAAAA CA-GTACTCC CTCCATCTGA 281 AATTGTTTGT CATGTTGCGC TTATTAAAAG TCAATTTGAC TAATTTTTAA AGGTAAATTA 35245 |||| || || |||||| || |||| ||||| ||||||| || || |||| || ||||||||| AATTATTAGT CATGTTATGC TTATCAAAAG TCAATTTAAC TAGTTTTCAA AGGTAAATTG 341 GATAACATTA ATTCGATATT TTAAACAAAA A-A--A-AAA TTCTAAAACT ATATGAAAAG 35189 ||| || || |||||||||| ||||| |||| | | | | | |||||||||| |||||||||| GATCACTATA ATTCGATATT TTAAATAAAA ATACTAGATA TTCTAAAACT ATATGAAAAG 401 TACTATAAAT --TAATTTTT TTTACATATT AATATGA-TA AAAAAATACA TCTTAAAACA 35132 |||| ||||| |||||||| |||||||||| ||||||| || |||||||||| || TACTGTAAAT CATAATTTTT TTTACATATT AATATGATTA AAAAAATACA TC........ 453 TTAGTCAAAG TTTTTATAGT TTGAATCTAA AAATAGAAAC CATGACAAAT AATATCGGAC 35072 .......... .......... .......... .......... .......... .......... 453 GGAGGAAGTA CTTTTTATTT AATTTATTGA CCATTTTGAT TTCTACACAC CTCAAATAAA 35012 .......... .......... .......... .......... .......... .......... 453 TCAGTATGAA TTGTAAGGGG AAAATGACAT ATATATATAT ATATATACAC ACACACACAC 34952 .......... .......... .......... .......... .......... .......... 453 TATCGTAAAT GGTATGTAAA TATCCTTCGT CATATTTTTG GAACATTGAT GTCCCCATCG 34892 .......... .......... .......... .......... .......... .......... 453 CTCAAACTAA AACATATATA CCCTTTATAT TATTAGACAT ACATGTGTTA TAATTTTTTC 34832 .......... .......... .......... .......... .......... .......... 453 TACCGATCAG ACATTTATTA AATATCGAAT CAACATATAA GATTACGCTA AGTATTCCTA 34772 .......... .......... .......... .......... .......... .......... 453 TTTAGTCTTC TGTTACAATG GAGTATATAT ATGCTTTAGT TTTTGGACGA TAAAAATATC 34712 .......... .......... .......... .......... .......... .......... 453 AATACCCTAA TAATACAATA AAATATATCT TGATATCGTC TATAATTGTT CAAAAGTATA 34652 .......... .......... .......... .......... .......... .......... 453 TTTATTTATT TTTCCTAAAT TGTATTAACA CATATAGTAT TGATTGAAAC TTGAAAGCAA 34592 .......... .......... .......... .......... .......... .......... 453 CATATATGTA TTTGCTATAA AATTTAAAAT GTTGTTATAG TTTAATTTGT CACATCGCAA 34532 .......... .......... .......... .......... .......... .......... 453 AATTTTTAAG GCCCGAAAAA ATTGGTAAAA AGAAAAAGGG TAATTGCCTA ATTTCTTTTA 34472 .......... .......... .......... .......... .......... .......... 453 GTGGAAATAA TAAAACGAGG AAACAGAAAA AAATAAAAAA TTATCATTTA TTGGGGATGA 34412 .......... .......... .......... .......... .......... .......... 453 AAAAAAAAGA GATTCTTTTT GGTAAGTAAG AAAAAATCTC GTGGCATTTG GCATAACATG 34352 .......... .......... .......... .......... .......... .......... 453 TCATCAATTT AAGTTTGTAG ACTCTTGAAA GTTCTTTTTT TTTTTAATAA TAGGAAAATT 34292 .......... .......... .......... .......... .......... .......... 453 ATTTATGGCT ATTTTTCTTC AAAATTTTAA CTTTTGAGGA TATAATTTGT CTTGTCATTT 34232 .......... .......... .......... .......... .......... .......... 453 GAACTGGTGT GTGCATTCAA TTTTTCGCTT CGTTCTTATA TTATTTGGTT TAGATTTTTT 34172 .......... .......... .......... .......... .......... .......... 453 ATTTTTGATT TTGAAGAAGT GTAAGTTAAT TCAAATCAAA ATAAATTTGA TTTGATTTGA 34112 .......... .......... .......... .......... .......... .......... 453 ATTTTCTCTT TTGGGTTTGA TTTTTTTTCG ATTTGGTTAA TCGATTACGT CAATAGTTAT 34052 .......... .......... .......... .......... .......... .......... 453 AAATATAACA AAGTTATATT TGTAATTT-T TTAAAAAAAT ATATAAATAT ATGTAGAGAA 33993 | ||||| |||||| || |||||| | | || ||| | | | || .......... ...TAATATT AATAATTTGA TTCTAAAAAT AGA-AATTAT AACGA-ACAA 498 TATTGAATTT CGTAAATATA CTTTTTAATA TAAATGACAA GTAAAACACC AAACTCAATA 33933 || || | |||| TAATGGAGGG AGTAA..... .......... .......... .......... .......... 513 CTTAAAAGTA TAACAATTGT AGATGTCCAA ACATAAGAAA AATAAACTAA TTCATAATGA 33873 .......... .......... .......... .......... .......... .......... 513 AAATAACAAA AAAGAAATAA AAGTGGTTAA CTCCAATTTA ATTCTAAACA CACACACATA 33813 .......... .......... .......... .......... .......... .......... 513 TATATAATTC ATTTTTTTTA ATTTCTAGAT TTTCATTTTT TCTAAATTCG AAACCAAACA 33753 .......... .......... .......... .......... .......... .......... 513 AAATAAATTA TAGATTCAAA ATAAAACCAA GAATCCAAAA AAAAAAAAAA CAATCCAAAT 33693 .......... .......... .......... .......... .......... .......... 513 TAGAATTCAA TTTGATTTAG TTTGGTTTTT CAATTTAATC CAAATAGTGC ACACCTATAT 33633 .......... .......... .......... .......... .......... .......... 513 TAAAGAATAG AGGCAATATA GTTATTTCAA CAATTTATAA GAAAAATATA ATTTTACTCA 33573 |||| | |||| | ||| |||||| .......... ...TAATAAA GTTAATACAA GAATTTA... .......... .......... 537 TAAAACGCTA CTGAACGTGA TTTATGTATA AAGAGTAGTG GAAATATAGT AATTTCAACA 33513 .......... .......... .......... .......... .......... .......... 537 ATTATAGCTA AAACATAATT TTACTCACAA AACGCTATCA CTGAACTTGA TTTATTTATA 33453 .......... .......... .......... .......... .......... .......... 537 AGAGTAGGGC AATATCAAAA TTTCAACAAT TTATAAGAAA AACATAACTT TACTTATAAA 33393 .......... .......... .......... .......... .......... .......... 537 GAAAATTAAG TAACCGATTA GCATGTTTAA AATCATAACC TAGTAACGAG CAAATAATTA 33333 .......... .......... .......... .......... .......... .......... 537 TGATATTTAT TAATTTGTCC AAAACATATT TGTGATTTAT TATATTATAT AGAGAAAACG 33273 .......... .......... .......... .......... .......... .......... 537 TGTGTGGTAA GTTTAAATTC ATTTGCTTCA AAATATACAG TATATAAATT GTTTTATACT 33213 .......... .......... .......... .......... .......... .......... 537 AACCTTCCAA AAAAATCTAT TTAAAACAAA ATGAAATTAT GTACTAATTT CTACTTTTAT 33153 |||| | | || || ||| | ||| | | | | || ||| | | |||| | .....TCCAT ATACATGTAA CTAAGATAAA TAAACAATCT CTATTAAATA CATGTTTTTT 592 TTTTCTTTTT 33143 |||| ||||| TTTTGTTTTT 602 hqPGS_C08HBa0320P23.1-_SGN-E539636+ (35379 35140,34038 33978,33619 33596) ******************************************************************************** EST sequence 17 -strand 826 n (File: SGN-E539633-) 1 AATTTTCAGC TAATAATTGA TCACGAGCTT CAACATGTGG TACACCTTTT TATATATAAA 61 TACATACTTC ATATATTTAA TATACGCACA AACATCTTTA TAATAACATT TCATTATAAT 121 AATATCAAGT TCTCTTTGAA ATATTTGGAT TAAAAACAGT ACTCCCTCCA TCTGAAATTA 181 TTAGTCATGT TATGCTTATC AAAAGTCAAT TTAACTAGTT TTCAAAGGTA AATTGGATCA 241 CTATAATTCG ATATTTTAAA TAAAAATACT AGATATTCTA AAACTATATG AAAAGTACTG 301 TAAATCATAA TTTTTTTTAC ATATTAATAT GATTAAAAAA ATACATCTAA TATTAATAAT 361 TTGATTCTAA AAATAGAAAT TATAACGAAC AATAATGGAG GGAGTAATAA TAAAGTTAAT 421 ACAAGAATTT ATCCATATAC ATGTAACTAA AATAAATAAA CAATCTCTAT TAAATACATG 481 TTTTTTTTTT GTTTTTGGAA AAAGTTTGTT CCGAAATTTT CGGCCAAGTA GTTTGACTAG 541 AAAAGGAAAA AACCGGAACT GTCACAACTG CATAACCTGA AATTCAGCCG GACATCTTTT 601 GGACTTCTTT TATGTGTACA ATTCATTTAT ATTGCTATCT AAGAGATAAT TAATTTTAAA 661 ATTAATTATT TTATTTTTAA AACTATAGAA ATGAGTTATC TGGTCTTAAG ATAATAAACA 721 TGATTAGCTT CCCATAAAAT AATCGACATG TGATATTTCT CATCATTCGT TATATGTATG 781 TTGTTTTTAT TATAAATAGA TGTTTTTAAA TAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 38276 to 29023): Exon 1 36632 36626 ( 7 n); cDNA 143 149 ( 7 n); score: 0.714 Intron 1 36625 35332 (1294 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 2 35331 35140 ( 192 n); cDNA 150 347 ( 198 n); score: 0.768 Intron 2 35139 34039 (1101 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.64) Exon 3 34038 33978 ( 61 n); cDNA 348 407 ( 60 n); score: 0.631 Intron 3 33977 33620 ( 358 n); Pd: 0.900 (s: 0.60), Pa: 0.000 (s: 0) Exon 4 33619 33596 ( 24 n); cDNA 408 431 ( 24 n); score: 0.792 Intron 4 33595 33208 ( 388 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 5 33207 33138 ( 70 n); cDNA 432 501 ( 70 n); score: 0.629 Intron 5 33137 29680 (3458 n); Pd: 0.000 (s: 0.60), Pa: 0.597 (s: 0) Exon 6 29679 29667 ( 13 n); cDNA 502 514 ( 13 n); score: 0.846 PPA cDNA 808 826 MATCH C08HBa0320P23.1- SGN-E539633- 0.712 367 0.444 C PGS_C08HBa0320P23.1-_SGN-E539633- (36632 36626,35331 35140,34038 33978,33619 33596,33207 33138,29679 29667) Alignment (genomic DNA sequence = upper lines): ATTTGTGGTG AAGCCTTTTT GGGTGGGGCC ATACTGGGTG CACATTTTTC TTGAATATAG 36573 ||||| ATTTGGA... .......... .......... .......... .......... .......... 149 CTATTAGTTA AGTTCGATTT TATGTATTAA CTAATTTACT TAATTAATTT TTAAATATAT 36513 .......... .......... .......... .......... .......... .......... 149 TAAATTATTA ATTAAATTAA TAAAAATATT TTTATTAAGT TTTGGTCTTT AATAATTTAG 36453 .......... .......... .......... .......... .......... .......... 149 TTTTTGATTT AAATCAATTC AAGATATTCA TAAAATAAAA ATATAATTTT TTTAATAATT 36393 .......... .......... .......... .......... .......... .......... 149 TAACGCGATA AAGGATAATG TAAATTTAAG GGCAATTTTA ACATATAGCA AAAATAAAAT 36333 .......... .......... .......... .......... .......... .......... 149 TTAAAATTTG TATGTTATAG TCATAGCAAA CATATATATA TATATAGAGA GAGAGAGTTC 36273 .......... .......... .......... .......... .......... .......... 149 GCTATTCATA TACAATTGAA AGTTATGCCT ATTTCAACTA TACATATATA CAAAGAAACA 36213 .......... .......... .......... .......... .......... .......... 149 ATTGTATAAT TCGTTGGTTA CTCTTCAGAT TGTATAATTT CACTGACAGA CCATTTGTAT 36153 .......... .......... .......... .......... .......... .......... 149 AAGTTGTTGT TAGCCTCTCA ATTCAACTGC ATGTGTTTGT ATATCTGTAT AAAATTTAAA 36093 .......... .......... .......... .......... .......... .......... 149 TTTGTCTACA ATTGAATCGA ATTATATAAA ACGAGAAAGA GAGAAATTTT ATACAATTCA 36033 .......... .......... .......... .......... .......... .......... 149 AATTTGTAAT AACGAGAAAG AGAGAAAGAC ATTTGGGCAT GGGAATATAC AATTGAATCG 35973 .......... .......... .......... .......... .......... .......... 149 AATTGTATAA AACGAGAAAG AAAAAAATTA TATACAATTT GAATTTGTAT CAAACGAGAA 35913 .......... .......... .......... .......... .......... .......... 149 AGAGAGAAAT GCAAAAGAGT CTTAGGCATG GAAAATTTGT ATTGTATAAT CATAAGTGTA 35853 .......... .......... .......... .......... .......... .......... 149 TCGGATGGAG ATATATGTAT ATGCATATGT ATATACAAAT TTCTCTCGCT TAATACAAAC 35793 .......... .......... .......... .......... .......... .......... 149 GGAAACACAA TTTGTACAAT TTTATTGTAT AAAGTGAGAG AGGCGAGCGA CAAGGAGCTA 35733 .......... .......... .......... .......... .......... .......... 149 GCGAGAGAAG GAGAGTGGCA AGCGAGAATA TGAGGGAGAG AGGGACTGAT AAATAGTTTG 35673 .......... .......... .......... .......... .......... .......... 149 TTATGTAACA CAAATAAATC AATCGGTAGC TACTGTATTT ATTTCACTAT TAGTTTGTCA 35613 .......... .......... .......... .......... .......... .......... 149 TTTTATACAA TTATCTCTAA ATTTGAATAC TCTTATAAAA TAGACATAGC ACTATTAACT 35553 .......... .......... .......... .......... .......... .......... 149 AATAGAAAAA AATTATATAA GTGCAATACA AATAAAAAAA CAAAATAATA ATGTGAATCG 35493 .......... .......... .......... .......... .......... .......... 149 AAGGCTAAAT AGTAAATGTG TAATGTACTG ATAATAAAAT TTAATATCTA TCTAGGGAAA 35433 .......... .......... .......... .......... .......... .......... 149 ATGAGTAAAT TACTACAATT TTATTAGGTT ATTTGATAAA ACCCAATATT AAAAAAATTA 35373 .......... .......... .......... .......... .......... .......... 149 AAATTCAATA AAAAATTATA AAATCATTAA AGAATAATGA CTCAATATCA TATACTTCCT 35313 | || | || |||| ||| .......... .......... .......... .......... .TTAAAAACA -GTACTCCCT 167 TCGTTCAGAA TTGTTTGTCA TGTTGCGCTT ATTAAAAGTC AATTTGACTA ATTTTTAAAG 35253 | | || || || |||| |||| |||| || ||||||| ||||| |||| |||| |||| CCATCTGAAA TTATTAGTCA TGTTATGCTT ATCAAAAGTC AATTTAACTA GTTTTCAAAG 227 GTAAATTAGA TAACATTAAT TCGATATTTT AAACAAAAA- A--A-AAATT CTAAAACTAT 35197 ||||||| || | || |||| |||||||||| ||| ||||| | | | ||| |||||||||| GTAAATTGGA TCACTATAAT TCGATATTTT AAATAAAAAT ACTAGATATT CTAAAACTAT 287 ATGAAAAGTA CTATAAAT-- TAATTTTTTT TACATATTAA TATGA-TAAA AAAATACATC 35140 |||||||||| || ||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATGAAAAGTA CTGTAAATCA TAATTTTTTT TACATATTAA TATGATTAAA AAAATACATC 347 TTAAAACATT AGTCAAAGTT TTTATAGTTT GAATCTAAAA ATAGAAACCA TGACAAATAA 35080 .......... .......... .......... .......... .......... .......... 347 TATCGGACGG AGGAAGTACT TTTTATTTAA TTTATTGACC ATTTTGATTT CTACACACCT 35020 .......... .......... .......... .......... .......... .......... 347 CAAATAAATC AGTATGAATT GTAAGGGGAA AATGACATAT ATATATATAT ATATACACAC 34960 .......... .......... .......... .......... .......... .......... 347 ACACACACTA TCGTAAATGG TATGTAAATA TCCTTCGTCA TATTTTTGGA ACATTGATGT 34900 .......... .......... .......... .......... .......... .......... 347 CCCCATCGCT CAAACTAAAA CATATATACC CTTTATATTA TTAGACATAC ATGTGTTATA 34840 .......... .......... .......... .......... .......... .......... 347 ATTTTTTCTA CCGATCAGAC ATTTATTAAA TATCGAATCA ACATATAAGA TTACGCTAAG 34780 .......... .......... .......... .......... .......... .......... 347 TATTCCTATT TAGTCTTCTG TTACAATGGA GTATATATAT GCTTTAGTTT TTGGACGATA 34720 .......... .......... .......... .......... .......... .......... 347 AAAATATCAA TACCCTAATA ATACAATAAA ATATATCTTG ATATCGTCTA TAATTGTTCA 34660 .......... .......... .......... .......... .......... .......... 347 AAAGTATATT TATTTATTTT TCCTAAATTG TATTAACACA TATAGTATTG ATTGAAACTT 34600 .......... .......... .......... .......... .......... .......... 347 GAAAGCAACA TATATGTATT TGCTATAAAA TTTAAAATGT TGTTATAGTT TAATTTGTCA 34540 .......... .......... .......... .......... .......... .......... 347 CATCGCAAAA TTTTTAAGGC CCGAAAAAAT TGGTAAAAAG AAAAAGGGTA ATTGCCTAAT 34480 .......... .......... .......... .......... .......... .......... 347 TTCTTTTAGT GGAAATAATA AAACGAGGAA ACAGAAAAAA ATAAAAAATT ATCATTTATT 34420 .......... .......... .......... .......... .......... .......... 347 GGGGATGAAA AAAAAAGAGA TTCTTTTTGG TAAGTAAGAA AAAATCTCGT GGCATTTGGC 34360 .......... .......... .......... .......... .......... .......... 347 ATAACATGTC ATCAATTTAA GTTTGTAGAC TCTTGAAAGT TCTTTTTTTT TTTAATAATA 34300 .......... .......... .......... .......... .......... .......... 347 GGAAAATTAT TTATGGCTAT TTTTCTTCAA AATTTTAACT TTTGAGGATA TAATTTGTCT 34240 .......... .......... .......... .......... .......... .......... 347 TGTCATTTGA ACTGGTGTGT GCATTCAATT TTTCGCTTCG TTCTTATATT ATTTGGTTTA 34180 .......... .......... .......... .......... .......... .......... 347 GATTTTTTAT TTTTGATTTT GAAGAAGTGT AAGTTAATTC AAATCAAAAT AAATTTGATT 34120 .......... .......... .......... .......... .......... .......... 347 TGATTTGAAT TTTCTCTTTT GGGTTTGATT TTTTTTCGAT TTGGTTAATC GATTACGTCA 34060 .......... .......... .......... .......... .......... .......... 347 ATAGTTATAA ATATAACAAA GTTATATTTG TAATTT-TTT AAAAAAATAT ATAAATATAT 34001 | ||||| |||||| || ||||||| | || |||| .......... .......... .TAATATTAA TAATTTGATT CTAAAAATAG A-AATTATAA 385 GTAGAGAATA TTGAATTTCG TAAATATACT TTTTAATATA AATGACAAGT AAAACACCAA 33941 | | |||| || | | ||| CGA-ACAATA ATGGAGGGAG TAA....... .......... .......... .......... 407 ACTCAATACT TAAAAGTATA ACAATTGTAG ATGTCCAAAC ATAAGAAAAA TAAACTAATT 33881 .......... .......... .......... .......... .......... .......... 407 CATAATGAAA ATAACAAAAA AGAAATAAAA GTGGTTAACT CCAATTTAAT TCTAAACACA 33821 .......... .......... .......... .......... .......... .......... 407 CACACATATA TATAATTCAT TTTTTTTAAT TTCTAGATTT TCATTTTTTC TAAATTCGAA 33761 .......... .......... .......... .......... .......... .......... 407 ACCAAACAAA ATAAATTATA GATTCAAAAT AAAACCAAGA ATCCAAAAAA AAAAAAAACA 33701 .......... .......... .......... .......... .......... .......... 407 ATCCAAATTA GAATTCAATT TGATTTAGTT TGGTTTTTCA ATTTAATCCA AATAGTGCAC 33641 .......... .......... .......... .......... .......... .......... 407 ACCTATATTA AAGAATAGAG GCAATATAGT TATTTCAACA ATTTATAAGA AAAATATAAT 33581 |||| ||| || | ||| | ||||| .......... .......... .TAATAAAGT TAATACAAGA ATTTA..... .......... 431 TTTACTCATA AAACGCTACT GAACGTGATT TATGTATAAA GAGTAGTGGA AATATAGTAA 33521 .......... .......... .......... .......... .......... .......... 431 TTTCAACAAT TATAGCTAAA ACATAATTTT ACTCACAAAA CGCTATCACT GAACTTGATT 33461 .......... .......... .......... .......... .......... .......... 431 TATTTATAAG AGTAGGGCAA TATCAAAATT TCAACAATTT ATAAGAAAAA CATAACTTTA 33401 .......... .......... .......... .......... .......... .......... 431 CTTATAAAGA AAATTAAGTA ACCGATTAGC ATGTTTAAAA TCATAACCTA GTAACGAGCA 33341 .......... .......... .......... .......... .......... .......... 431 AATAATTATG ATATTTATTA ATTTGTCCAA AACATATTTG TGATTTATTA TATTATATAG 33281 .......... .......... .......... .......... .......... .......... 431 AGAAAACGTG TGTGGTAAGT TTAAATTCAT TTGCTTCAAA ATATACAGTA TATAAATTGT 33221 .......... .......... .......... .......... .......... .......... 431 TTTATACTAA CCTTCCAAAA AAATCTATTT AAAACAAAAT GAAATTATGT ACTAATTTCT 33161 |||| | | || || | |||| ||| | | | | | | ||| | | .......... ...TCCATAT ACATGTAACT AAAATAAATA AACAATCTCT ATTAAATACA 478 ACTTTTATTT TTCTTTTTTC ATCCTTTATA ATGTTGATGG GTGGTGTTTT TGTCCCGTTC 33101 |||| ||| || ||||| | TGTTTTTTTT TTGTTTTTGG AAA....... .......... .......... .......... 501 ACCAATCAAA AAGATAGATT TTGCTTGCCA AAAATCATTT CAACTTTCAC CATAATATAT 33041 .......... .......... .......... .......... .......... .......... 501 ATATATATAT ATATATATAT ATATATTATG GTGAAAGTTG AAATGATATA TATAGGAAAT 32981 .......... .......... .......... .......... .......... .......... 501 CAACAATTAA TTATAGTTAA TATTATTTTT CAAATTAAAT TATGAAATTG TCTTTTCAAG 32921 .......... .......... .......... .......... .......... .......... 501 CTCAAATTCA CATGAACCCT AAACTGAATT TGAGGTGATA CAAAATATAA AGGATTGTTA 32861 .......... .......... .......... .......... .......... .......... 501 TAACAAAGAG ATGTATAAAT GTGTAATCTC ACAAAACTCT TAATAGTATG CAGTATTACT 32801 .......... .......... .......... .......... .......... .......... 501 TATAAAATAC AAGATAGTGA GTTAATTCCA TATTCTTGAC TAGTAGATGA ATAGATGCAA 32741 .......... .......... .......... .......... .......... .......... 501 TGGATTAAAA AACTCATAGA AATTTGGATC AAGATCTCAA TTAACAAAAA CAAGTTTTTA 32681 .......... .......... .......... .......... .......... .......... 501 GATGATAAAA TTATTTGATG TTTATATTGA TTAAAAAATA AGCATATACT TAGATTGTGG 32621 .......... .......... .......... .......... .......... .......... 501 ATTATAGCTA AATTATTGTA ATCTAATGCC CATAGAAATT GAAACAAACC TCTCCACTTA 32561 .......... .......... .......... .......... .......... .......... 501 CATGTTACAA TACTTAGAAC ATCCACACCC AAACTTATAA TTCTATTCTT ACATCTTGCA 32501 .......... .......... .......... .......... .......... .......... 501 TATTAATTTT GAAGAAGTGA GATAATTCAG TAATTCGTTA TAGCTTTTGC GAAGCCAATA 32441 .......... .......... .......... .......... .......... .......... 501 AAATAGCAAA CGTTTTGTTC AACTTAGGTT TCAAGCTAAC AATAATCAAT CCACCACTCT 32381 .......... .......... .......... .......... .......... .......... 501 TTTTGCTAAC TCCCTTGAAG GAATCACAAG TCAAAAAAGA TCAAGATGAA GCTCTATTCA 32321 .......... .......... .......... .......... .......... .......... 501 TTAAACTAAT ATATTATGAT CTATAAATAA TAAATTAGCT CATTTGACAA TCTATCTATA 32261 .......... .......... .......... .......... .......... .......... 501 ATCTCTAAAA ATGTTGTTAC TGTGCAATTA TAATAGCTAA TTTGCTTACA ATAAAATTAT 32201 .......... .......... .......... .......... .......... .......... 501 TTTAGAAGTA CATAATATAA AACATAAGTA CTTGTTATCT TTGACGGTTA CAAAATTAAA 32141 .......... .......... .......... .......... .......... .......... 501 TAATAAGTTT TTTTATATTT TTAAAAAAAA TTAAATAAGT ATATAAGAGC AAATTATTAA 32081 .......... .......... .......... .......... .......... .......... 501 TTCAAATTAA ATACTATAAT TCTAGTTTGA TTTAATTGTA CCCCTTAGTA AACTATTGTT 32021 .......... .......... .......... .......... .......... .......... 501 ATTTCGCTTC TCTCCTAGTG AATCTCGCTT GCCACTCTCA TTCTCTTCCT CGCCTCTCTC 31961 .......... .......... .......... .......... .......... .......... 501 ACTTTTATAC AAATGCAATG TATGAAATAT GTTTGTGTTT GTATAAAGCA AGAGAAAATT 31901 .......... .......... .......... .......... .......... .......... 501 GTAGATATAT ATATGTGTTC GTTCCCCTCT ATCTTCTTTC CAGATCTCAC TCGCCACTCT 31841 .......... .......... .......... .......... .......... .......... 501 TCCAGAAATT GCTCGCTCGC CTCGTATAAA ATGCGTTTGT GTTTATATAA AACAAGAGAA 31781 .......... .......... .......... .......... .......... .......... 501 AATATTATAT ATACACATAC TTGTTCCCCT TTCTCAAATC TCACACGCCC ATCTCCCAGA 31721 .......... .......... .......... .......... .......... .......... 501 TCTTGCTCAC TCGCGCCACT TCCTAGATCT TGCTCACTCA CTTGCCTCTC TTACTTTATA 31661 .......... .......... .......... .......... .......... .......... 501 CAAACAGAAA TGTATAATTA TGTTTGTGTT CGTAATAAAA TGAGAGAAAA TTTTATATTT 31601 .......... .......... .......... .......... .......... .......... 501 AAATACTATG TATATATTTT CGTCCTATAC ACTTATGATT ATATAAATAC GAGAGAAAAT 31541 .......... .......... .......... .......... .......... .......... 501 TATATATATA AATGCTAATT ATGAAGACCA ATTATACAAA CTATTACTAT AACTACGAGT 31481 .......... .......... .......... .......... .......... .......... 501 ATGATTTTTA TGTTTGCTAC CTTTTGAGTA TTTTAAAAAT TATTTTAACA CCTAAAAGGC 31421 .......... .......... .......... .......... .......... .......... 501 AAATAGAGAC CGAGGGCAAT TTTGGTCATT TTCATTTTTA CTTTTAACGC CTTCGGGGTT 31361 .......... .......... .......... .......... .......... .......... 501 TAGACCGTCC ATTCTCACTC CATCGAAATT GAGGTCACAC AAGAGAACTG AAGAGTGACA 31301 .......... .......... .......... .......... .......... .......... 501 AAAATGGCAA AGTCGTCGGC GACCAAAGAC GCCCAAGCTC TTTTCCATTC TCTCCGTTCT 31241 .......... .......... .......... .......... .......... .......... 501 GCTTATGCCG CAACTCCGAC GAATCTCAAG GTAACTGACT CTCTCCTCGA TTCCCGTGCA 31181 .......... .......... .......... .......... .......... .......... 501 GCAATTTACT TTCATACAAC TTTCAAATCT ATACAGTTTC AGTCAATATT CACGTATTTC 31121 .......... .......... .......... .......... .......... .......... 501 TATTGGGTTC TAATTGAATT GTTTTTCATC GCAGATCATT GATCTATATG TCATCTTTGC 31061 .......... .......... .......... .......... .......... .......... 501 GATCTCTACT GCCTTAATTC AGGTATTTAC TTAACAACTT TGCTGTCATT GATCCATTTT 31001 .......... .......... .......... .......... .......... .......... 501 CTGTATGTAT GTATCTTATG GGGTCAATCT TATTGCTATA GATCTGTAAT TATTATGTTC 30941 .......... .......... .......... .......... .......... .......... 501 TTACTGTGGT TGTATTGGTA AAATTTTGGA TGATCCATGT TCTCATAAGC TGTTAACTTT 30881 .......... .......... .......... .......... .......... .......... 501 CTAATGTCCT TCGAAATTTT TATTGAAAAT GTATGTTATG GGGTTTGAAT ACTGATGGCT 30821 .......... .......... .......... .......... .......... .......... 501 TAATGATGTC AGTTTAAGCA TTACCTAGAT TGATTTGATC TTGGTCTAAT GCTTGTTTCA 30761 .......... .......... .......... .......... .......... .......... 501 ATTGAGCATC TGATGCATTA GAGATATGCT TTTGATGCTA ATGGCGAAGT GGCTGAGGCA 30701 .......... .......... .......... .......... .......... .......... 501 TAATTTTTTT GGGAAGAATG TATTATAAGT AGAAAGTGGA GTTTGGGGCG GAGTATGTTT 30641 .......... .......... .......... .......... .......... .......... 501 TATGCTTTGA GGGGTATTAT CTTTTATTCT GTAAAGAAGA TTCAAATTCA ATCCTTCAAT 30581 .......... .......... .......... .......... .......... .......... 501 TGTTCAAACA ACACCAATAA GGTTAGATAG TATTTATTAT GAGAATCTGT CATTTTGGTT 30521 .......... .......... .......... .......... .......... .......... 501 TGTTGTGAAT AATTAGCCTA ATCAGAGCTA ATATGGGAGG TCTAGAAGGT CACTGTTCCC 30461 .......... .......... .......... .......... .......... .......... 501 TCTGTACATC CAATGAAGAG TCATTTGGTT TGAGTCAGTT CCGTCATGAA TTTTGACGTT 30401 .......... .......... .......... .......... .......... .......... 501 ACAGTCTGCC AACGTGATAG TCACCTTTCA TGAATTTTCA TAGTAGTTAC TATCCAATTC 30341 .......... .......... .......... .......... .......... .......... 501 CTCTAATCCT TTTTTTATAA ATCAAAATGA TTTCATTAAT AACACCAAGA GGGTATCACC 30281 .......... .......... .......... .......... .......... .......... 501 ATCCAACCAT CTCTTCTATA TAAAGTATCC CCTTTTCAGT AAATAAAATG GAAATAAAGG 30221 .......... .......... .......... .......... .......... .......... 501 TCTCTTGTCA CCTCATAGTA GACTCTCTAA TCCTCCAAAA AGTTCTTCTG TTCCCTTATC 30161 .......... .......... .......... .......... .......... .......... 501 TCCACATCAA CCAAAGACAT AAAGGGGAAG CCACTCTACA TGTCCTTCCA GCATCTATTT 30101 .......... .......... .......... .......... .......... .......... 501 CAGGTCTCCA CCTCTCCAAT GTTCCTGTCA GACTCACAGA ATTAGGCTGA TATTTGACAT 30041 .......... .......... .......... .......... .......... .......... 501 GGGATGTACC GACAATAGTT CCATTGTGAA CTAATTATAA CCATCTCCTT GTCAAGCATC 29981 .......... .......... .......... .......... .......... .......... 501 TGCTGTTAAA GGTGATTTTC AACTCTGCAT ACCATGTGAA GAAAGTTAGT TTCTTTGGTA 29921 .......... .......... .......... .......... .......... .......... 501 CCTTTTTCTC CCATACTGAT CTCTATTTTT TTAAAAAATC AGCAACTGCG AAAGACAATC 29861 .......... .......... .......... .......... .......... .......... 501 ATAATACGAT TCTAAGGCGG TGATCTTTTC CACATCACTC TATCTTCTTC CCAAAGCAGT 29801 .......... .......... .......... .......... .......... .......... 501 CATGTTTACA TCATCCGTTT TCCACTCTTG TATGTATCTC TAAAATAAAA TTTGACAATA 29741 .......... .......... .......... .......... .......... .......... 501 CTTGGCTCCC TTCTCTTCTG AGGAGTTTGT CTGCTGTTGC TTCTTTGTCA CTATCCTTTA 29681 .......... .......... .......... .......... .......... .......... 501 GAAGTTGGAT CCGA 29667 ||||| | | |||| .AAGTTTGTT CCGA 514 hqPGS_C08HBa0320P23.1-_SGN-E539633- (35331 35140,34038 33978,33619 33596) ******************************************************************************** EST sequence 54 -strand 553 n (File: SGN-E208987-) 1 AAAAAAATTA GATATTCTAA AACTATATGA AAAGTACTAT AAATTACAAC TTTTTGCATA 61 TTAATATGAT AAAAAAATGA TCTTAAAATA TTAGCAAAGT TTTTATAATT TAACTGTAAA 121 AATAGAAATA ACGACAAGTA TAATAAATTC AACTGGCTAT TATAATTTCA AAATGTAATT 181 TATTTCAGTA CAGTGCATCT ATTAATCATG ATAATTAATG AGATACATTA CAGAATACAC 241 GTAACTAAAA AGTTTATTTC CCAAAGCATG AAGATTTATT ATCAAAATAG ACAATAATAG 301 CCCATGGTGA TAATACACTT TTAGCATTTT TCAACCCTCA TTTCCATCAA TTTTGCTATC 361 TGGTCCGCAC CTAATGTTGC ACTTCCCATC ACAACGAGCG TATTCTCTCG GTGGGAGACC 421 AACACAAGCA GTATTGCAAC TGTCCCAGCA ATTGACACCC TGAGCTGCGA CGCCGACGAT 481 GTCGGTGTTG GCCGATAAAA GGATCAAAAA CACCAAAGCC ATAGCTGCCA CTGAATTCAT 541 TTTCTTGTTT TCC Predicted gene structure (within gDNA segment 35949 to 29195): Exon 1 35222 35084 ( 139 n); cDNA 1 137 ( 137 n); score: 0.849 Intron 1 35083 32361 (2723 n); Pd: 0.000 (s: 0.82), Pa: 0.412 (s: 0) Exon 2 32360 32352 ( 9 n); cDNA 138 146 ( 9 n); score: 0.667 Intron 2 32351 32322 ( 30 n); Pd: 0.633 (s: 0), Pa: 0.000 (s: 0.66) ?? Exon 3 32321 32249 ( 73 n); cDNA 147 216 ( 70 n); score: 0.623 Intron 3 32248 30755 (1494 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 4 30754 30738 ( 17 n); cDNA 217 233 ( 17 n); score: 0.706 MATCH C08HBa0320P23.1- SGN-E208987- 0.771 238 0.430 C PGS_C08HBa0320P23.1-_SGN-E208987- (35222 35084,32360 32352,32321 32249,30754 30738) Alignment (genomic DNA sequence = upper lines): AAACAAAAAA AAAATTCTAA AACTATATGA AAAGTACTAT AAATTAATTT TTTTTACATA 35163 ||| ||| | | ||||||| |||||||||| |||||||||| |||||| ||||| |||| AAAAAAATTA GATATTCTAA AACTATATGA AAAGTACTAT AAATTACAAC TTTTTGCATA 60 TTAATATGAT AAAAAAATAC ATCTTAAAAC ATTAGTCAAA GTTTTTATAG TTTGAATCTA 35103 |||||||||| |||||||| ||||||||| ||||| |||| ||||||||| ||| | | || TTAATATGAT AAAAAAAT-G ATCTTAAAAT ATTAG-CAAA GTTTTTATAA TTTAACTGTA 118 AAAATAGAAA CCATGACAAA TAATATCGGA CGGAGGAAGT ACTTTTTATT TAATTTATTG 35043 |||||||||| | ||||| AAAATAGAAA TAACGACAA. .......... .......... .......... .......... 137 ACCATTTTGA TTTCTACACA CCTCAAATAA ATCAGTATGA ATTGTAAGGG GAAAATGACA 34983 .......... .......... .......... .......... .......... .......... 137 TATATATATA TATATATACA CACACACACA CTATCGTAAA TGGTATGTAA ATATCCTTCG 34923 .......... .......... .......... .......... .......... .......... 137 TCATATTTTT GGAACATTGA TGTCCCCATC GCTCAAACTA AAACATATAT ACCCTTTATA 34863 .......... .......... .......... .......... .......... .......... 137 TTATTAGACA TACATGTGTT ATAATTTTTT CTACCGATCA GACATTTATT AAATATCGAA 34803 .......... .......... .......... .......... .......... .......... 137 TCAACATATA AGATTACGCT AAGTATTCCT ATTTAGTCTT CTGTTACAAT GGAGTATATA 34743 .......... .......... .......... .......... .......... .......... 137 TATGCTTTAG TTTTTGGACG ATAAAAATAT CAATACCCTA ATAATACAAT AAAATATATC 34683 .......... .......... .......... .......... .......... .......... 137 TTGATATCGT CTATAATTGT TCAAAAGTAT ATTTATTTAT TTTTCCTAAA TTGTATTAAC 34623 .......... .......... .......... .......... .......... .......... 137 ACATATAGTA TTGATTGAAA CTTGAAAGCA ACATATATGT ATTTGCTATA AAATTTAAAA 34563 .......... .......... .......... .......... .......... .......... 137 TGTTGTTATA GTTTAATTTG TCACATCGCA AAATTTTTAA GGCCCGAAAA AATTGGTAAA 34503 .......... .......... .......... .......... .......... .......... 137 AAGAAAAAGG GTAATTGCCT AATTTCTTTT AGTGGAAATA ATAAAACGAG GAAACAGAAA 34443 .......... .......... .......... .......... .......... .......... 137 AAAATAAAAA ATTATCATTT ATTGGGGATG AAAAAAAAAG AGATTCTTTT TGGTAAGTAA 34383 .......... .......... .......... .......... .......... .......... 137 GAAAAAATCT CGTGGCATTT GGCATAACAT GTCATCAATT TAAGTTTGTA GACTCTTGAA 34323 .......... .......... .......... .......... .......... .......... 137 AGTTCTTTTT TTTTTTAATA ATAGGAAAAT TATTTATGGC TATTTTTCTT CAAAATTTTA 34263 .......... .......... .......... .......... .......... .......... 137 ACTTTTGAGG ATATAATTTG TCTTGTCATT TGAACTGGTG TGTGCATTCA ATTTTTCGCT 34203 .......... .......... .......... .......... .......... .......... 137 TCGTTCTTAT ATTATTTGGT TTAGATTTTT TATTTTTGAT TTTGAAGAAG TGTAAGTTAA 34143 .......... .......... .......... .......... .......... .......... 137 TTCAAATCAA AATAAATTTG ATTTGATTTG AATTTTCTCT TTTGGGTTTG ATTTTTTTTC 34083 .......... .......... .......... .......... .......... .......... 137 GATTTGGTTA ATCGATTACG TCAATAGTTA TAAATATAAC AAAGTTATAT TTGTAATTTT 34023 .......... .......... .......... .......... .......... .......... 137 TTAAAAAAAT ATATAAATAT ATGTAGAGAA TATTGAATTT CGTAAATATA CTTTTTAATA 33963 .......... .......... .......... .......... .......... .......... 137 TAAATGACAA GTAAAACACC AAACTCAATA CTTAAAAGTA TAACAATTGT AGATGTCCAA 33903 .......... .......... .......... .......... .......... .......... 137 ACATAAGAAA AATAAACTAA TTCATAATGA AAATAACAAA AAAGAAATAA AAGTGGTTAA 33843 .......... .......... .......... .......... .......... .......... 137 CTCCAATTTA ATTCTAAACA CACACACATA TATATAATTC ATTTTTTTTA ATTTCTAGAT 33783 .......... .......... .......... .......... .......... .......... 137 TTTCATTTTT TCTAAATTCG AAACCAAACA AAATAAATTA TAGATTCAAA ATAAAACCAA 33723 .......... .......... .......... .......... .......... .......... 137 GAATCCAAAA AAAAAAAAAA CAATCCAAAT TAGAATTCAA TTTGATTTAG TTTGGTTTTT 33663 .......... .......... .......... .......... .......... .......... 137 CAATTTAATC CAAATAGTGC ACACCTATAT TAAAGAATAG AGGCAATATA GTTATTTCAA 33603 .......... .......... .......... .......... .......... .......... 137 CAATTTATAA GAAAAATATA ATTTTACTCA TAAAACGCTA CTGAACGTGA TTTATGTATA 33543 .......... .......... .......... .......... .......... .......... 137 AAGAGTAGTG GAAATATAGT AATTTCAACA ATTATAGCTA AAACATAATT TTACTCACAA 33483 .......... .......... .......... .......... .......... .......... 137 AACGCTATCA CTGAACTTGA TTTATTTATA AGAGTAGGGC AATATCAAAA TTTCAACAAT 33423 .......... .......... .......... .......... .......... .......... 137 TTATAAGAAA AACATAACTT TACTTATAAA GAAAATTAAG TAACCGATTA GCATGTTTAA 33363 .......... .......... .......... .......... .......... .......... 137 AATCATAACC TAGTAACGAG CAAATAATTA TGATATTTAT TAATTTGTCC AAAACATATT 33303 .......... .......... .......... .......... .......... .......... 137 TGTGATTTAT TATATTATAT AGAGAAAACG TGTGTGGTAA GTTTAAATTC ATTTGCTTCA 33243 .......... .......... .......... .......... .......... .......... 137 AAATATACAG TATATAAATT GTTTTATACT AACCTTCCAA AAAAATCTAT TTAAAACAAA 33183 .......... .......... .......... .......... .......... .......... 137 ATGAAATTAT GTACTAATTT CTACTTTTAT TTTTCTTTTT TCATCCTTTA TAATGTTGAT 33123 .......... .......... .......... .......... .......... .......... 137 GGGTGGTGTT TTTGTCCCGT TCACCAATCA AAAAGATAGA TTTTGCTTGC CAAAAATCAT 33063 .......... .......... .......... .......... .......... .......... 137 TTCAACTTTC ACCATAATAT ATATATATAT ATATATATAT ATATATATTA TGGTGAAAGT 33003 .......... .......... .......... .......... .......... .......... 137 TGAAATGATA TATATAGGAA ATCAACAATT AATTATAGTT AATATTATTT TTCAAATTAA 32943 .......... .......... .......... .......... .......... .......... 137 ATTATGAAAT TGTCTTTTCA AGCTCAAATT CACATGAACC CTAAACTGAA TTTGAGGTGA 32883 .......... .......... .......... .......... .......... .......... 137 TACAAAATAT AAAGGATTGT TATAACAAAG AGATGTATAA ATGTGTAATC TCACAAAACT 32823 .......... .......... .......... .......... .......... .......... 137 CTTAATAGTA TGCAGTATTA CTTATAAAAT ACAAGATAGT GAGTTAATTC CATATTCTTG 32763 .......... .......... .......... .......... .......... .......... 137 ACTAGTAGAT GAATAGATGC AATGGATTAA AAAACTCATA GAAATTTGGA TCAAGATCTC 32703 .......... .......... .......... .......... .......... .......... 137 AATTAACAAA AACAAGTTTT TAGATGATAA AATTATTTGA TGTTTATATT GATTAAAAAA 32643 .......... .......... .......... .......... .......... .......... 137 TAAGCATATA CTTAGATTGT GGATTATAGC TAAATTATTG TAATCTAATG CCCATAGAAA 32583 .......... .......... .......... .......... .......... .......... 137 TTGAAACAAA CCTCTCCACT TACATGTTAC AATACTTAGA ACATCCACAC CCAAACTTAT 32523 .......... .......... .......... .......... .......... .......... 137 AATTCTATTC TTACATCTTG CATATTAATT TTGAAGAAGT GAGATAATTC AGTAATTCGT 32463 .......... .......... .......... .......... .......... .......... 137 TATAGCTTTT GCGAAGCCAA TAAAATAGCA AACGTTTTGT TCAACTTAGG TTTCAAGCTA 32403 .......... .......... .......... .......... .......... .......... 137 ACAATAATCA ATCCACCACT CTTTTTGCTA ACTCCCTTGA AGGAATCACA AGTCAAAAAA 32343 | || | | | .......... .......... .......... .......... ..GTATAATA A......... 146 GATCAAGATG AAGCTCTATT CATTAAACTA ATATATTATG ATCTATAAAT AATAAATTAG 32283 ||| |||| |||||| || | |||| ||| ||| .......... .......... .ATTCAACT- GGCTATTATA ATTTCAAAAT -GTAATTTAT 183 CTCATTTGAC AATCTATCTA -TAATCTCTA AAAATGTTGT TACTGTGCAA TTATAATAGC 32224 ||| | || | | ||||| ||||| | || | TTCA-GT-AC AGTGCATCTA TTAATCATGA TAATT..... .......... .......... 216 TAATTTGCTT ACAATAAAAT TATTTTAGAA GTACATAATA TAAAACATAA GTACTTGTTA 32164 .......... .......... .......... .......... .......... .......... 216 TCTTTGACGG TTACAAAATT AAATAATAAG TTTTTTTATA TTTTTAAAAA AAATTAAATA 32104 .......... .......... .......... .......... .......... .......... 216 AGTATATAAG AGCAAATTAT TAATTCAAAT TAAATACTAT AATTCTAGTT TGATTTAATT 32044 .......... .......... .......... .......... .......... .......... 216 GTACCCCTTA GTAAACTATT GTTATTTCGC TTCTCTCCTA GTGAATCTCG CTTGCCACTC 31984 .......... .......... .......... .......... .......... .......... 216 TCATTCTCTT CCTCGCCTCT CTCACTTTTA TACAAATGCA ATGTATGAAA TATGTTTGTG 31924 .......... .......... .......... .......... .......... .......... 216 TTTGTATAAA GCAAGAGAAA ATTGTAGATA TATATATGTG TTCGTTCCCC TCTATCTTCT 31864 .......... .......... .......... .......... .......... .......... 216 TTCCAGATCT CACTCGCCAC TCTTCCAGAA ATTGCTCGCT CGCCTCGTAT AAAATGCGTT 31804 .......... .......... .......... .......... .......... .......... 216 TGTGTTTATA TAAAACAAGA GAAAATATTA TATATACACA TACTTGTTCC CCTTTCTCAA 31744 .......... .......... .......... .......... .......... .......... 216 ATCTCACACG CCCATCTCCC AGATCTTGCT CACTCGCGCC ACTTCCTAGA TCTTGCTCAC 31684 .......... .......... .......... .......... .......... .......... 216 TCACTTGCCT CTCTTACTTT ATACAAACAG AAATGTATAA TTATGTTTGT GTTCGTAATA 31624 .......... .......... .......... .......... .......... .......... 216 AAATGAGAGA AAATTTTATA TTTAAATACT ATGTATATAT TTTCGTCCTA TACACTTATG 31564 .......... .......... .......... .......... .......... .......... 216 ATTATATAAA TACGAGAGAA AATTATATAT ATAAATGCTA ATTATGAAGA CCAATTATAC 31504 .......... .......... .......... .......... .......... .......... 216 AAACTATTAC TATAACTACG AGTATGATTT TTATGTTTGC TACCTTTTGA GTATTTTAAA 31444 .......... .......... .......... .......... .......... .......... 216 AATTATTTTA ACACCTAAAA GGCAAATAGA GACCGAGGGC AATTTTGGTC ATTTTCATTT 31384 .......... .......... .......... .......... .......... .......... 216 TTACTTTTAA CGCCTTCGGG GTTTAGACCG TCCATTCTCA CTCCATCGAA ATTGAGGTCA 31324 .......... .......... .......... .......... .......... .......... 216 CACAAGAGAA CTGAAGAGTG ACAAAAATGG CAAAGTCGTC GGCGACCAAA GACGCCCAAG 31264 .......... .......... .......... .......... .......... .......... 216 CTCTTTTCCA TTCTCTCCGT TCTGCTTATG CCGCAACTCC GACGAATCTC AAGGTAACTG 31204 .......... .......... .......... .......... .......... .......... 216 ACTCTCTCCT CGATTCCCGT GCAGCAATTT ACTTTCATAC AACTTTCAAA TCTATACAGT 31144 .......... .......... .......... .......... .......... .......... 216 TTCAGTCAAT ATTCACGTAT TTCTATTGGG TTCTAATTGA ATTGTTTTTC ATCGCAGATC 31084 .......... .......... .......... .......... .......... .......... 216 ATTGATCTAT ATGTCATCTT TGCGATCTCT ACTGCCTTAA TTCAGGTATT TACTTAACAA 31024 .......... .......... .......... .......... .......... .......... 216 CTTTGCTGTC ATTGATCCAT TTTCTGTATG TATGTATCTT ATGGGGTCAA TCTTATTGCT 30964 .......... .......... .......... .......... .......... .......... 216 ATAGATCTGT AATTATTATG TTCTTACTGT GGTTGTATTG GTAAAATTTT GGATGATCCA 30904 .......... .......... .......... .......... .......... .......... 216 TGTTCTCATA AGCTGTTAAC TTTCTAATGT CCTTCGAAAT TTTTATTGAA AATGTATGTT 30844 .......... .......... .......... .......... .......... .......... 216 ATGGGGTTTG AATACTGATG GCTTAATGAT GTCAGTTTAA GCATTACCTA GATTGATTTG 30784 .......... .......... .......... .......... .......... .......... 216 ATCTTGGTCT AATGCTTGTT TCAATTGAGC ATCTGATGCA TTAGAG 30738 || ||| || ||| || .......... .......... .........A ATGAGATACA TTACAG 233 hqPGS_C08HBa0320P23.1-_SGN-E208987- (35222 35084) ******************************************************************************** EST sequence 83 +strand 593 n (File: SGN-E285125+) 1 TTCAATGCTC ACTTCTCAGC AGATGTTTTC ACCAATATTC TTTTTCAGGA TGGTACTCTT 61 GAGGGCGTGG AGCGGGAGGT TGCCTCCTTA TTTCACCTTC CCCACAATTT TCAGCTAATA 121 ATTGATCACG AGCTTCAACA TGTGGTACAC CTTTTTATAT ATAAATACAT ACTTCATATA 181 TTTAATATAC ACACAAACAT CTTTATAATA ACATTTCATT ATAATAATAT TAAGTTCTCT 241 TTGAAATATT TGGATTAAAA ACAGTACTCC CTCCATCTGA AATTATTAGT CATGTTATGC 301 TTATCAAAAG TCAATTTAAC TAGTTTTCAA AGGTAAATTG GATCACTATA ATTCGATATT 361 TTAAATAAAA ATACTAGATA TTCTAAAACT ATATGAAAAG TACTGTAAAT CATAATTTTT 421 TTTACATATT AATATGATTA AAAAAATACA TCTAATATTA ATAATTTGAT TCTAAAAATA 481 GAAATTATAA CGAACAATAA TGGAGGGAGT AATAATAAAG TTAATACAAG AATTTATCCA 541 TATACATGTA ACTAAAATAA ATAAACAATC TCTATTAAAT ACATGTGTTT TTT Predicted gene structure (within gDNA segment 39316 to 32993): Exon 1 37282 37254 ( 29 n); cDNA 87 113 ( 27 n); score: 0.690 Intron 1 37253 37040 ( 214 n); Pd: 0.000 (s: 0), Pa: 0.147 (s: 0) Exon 2 37039 37014 ( 26 n); cDNA 114 137 ( 24 n); score: 0.692 Intron 2 37013 36633 ( 381 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 36632 36613 ( 20 n); cDNA 138 156 ( 19 n); score: 0.750 Intron 3 36612 35829 ( 784 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.65) Exon 4 35828 35780 ( 49 n); cDNA 157 204 ( 48 n); score: 0.653 Intron 4 35779 35380 ( 400 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0.50) Exon 5 35379 35140 ( 240 n); cDNA 205 452 ( 248 n); score: 0.715 Intron 5 35139 34039 (1101 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.64) Exon 6 34038 33978 ( 61 n); cDNA 453 512 ( 60 n); score: 0.631 MATCH C08HBa0320P23.1- SGN-E285125+ 0.698 425 0.717 C PGS_C08HBa0320P23.1-_SGN-E285125+ (37282 37254,37039 37014,36632 36613,35828 35780,35379 35140,34038 33978) Alignment (genomic DNA sequence = upper lines): CTCTTTTCAA CCATCCTAGA CAAATTACAG CCCAAAAAGT ACTGGGAGCG GAGCTAGCTC 37223 || |||| | || ||| | ||| || || CTTATTTC-A CCTTCCC-CA CAATTTTCA. .......... .......... .......... 113 TCCGGTGAAC CGATCCAAAC CTTGAATTTA TATCAAAAAT CAACTAAATA TACCTAAATT 37163 .......... .......... .......... .......... .......... .......... 113 ATTAATTTAG AATCCAATAA CTTGGGATAT ACAAGGATTA ATCCCGAACC AAATTTATAC 37103 .......... .......... .......... .......... .......... .......... 113 TGCATTTCGT TGATGGTATA AGTTAATCCT ATCAACCAAA AATGATTATA AATTTTATTG 37043 .......... .......... .......... .......... .......... .......... 113 TAGGCTTAAT ACTTGATATC TAACTTGGAA TTATAATCTC AGGACTTTAA TCCCGAATAA 36983 || |||| | ||||| | | ||| | ...GC-TAAT AATTGATCAC GAGCTTC-A. .......... .......... .......... 137 ATCCACCTAT GGAATAGAAT TCAAAACTCA TAAACCTCAA ATCACAAATA AAAGAGCATT 36923 .......... .......... .......... .......... .......... .......... 137 AGAAGTTGAG CCAAATCAAG GAATACTGAC CGAGAGCGAG AGACTTGTGA ATGACTGTAA 36863 .......... .......... .......... .......... .......... .......... 137 CTGCGCAAAG TCGTAGGAAA GAGAGCTCTA CTACTAGTGC TGCTAAGAGA AGGAGCTGAT 36803 .......... .......... .......... .......... .......... .......... 137 GTAACTTTGC AAATGGCACC GATGTTTGAG AAAGTCGCCA TAGTTTTCTC TTCCACAGTT 36743 .......... .......... .......... .......... .......... .......... 137 CACAGAGATG AGATTGAGAA GTTATCTAAT CAATGGAAGA AAATGAATAG CAAAGGCAAT 36683 .......... .......... .......... .......... .......... .......... 137 AGTTGAACTT TGGCAAAATG CTTTCTGAAA TTTGGTTTCT GTTTTGCCAG ATTTGTGGTG 36623 | |||||| .......... .......... .......... .......... .......... ACATGTGGT- 146 AAGCCTTTTT GGGTGGGGCC ATACTGGGTG CACATTTTTC TTGAATATAG CTATTAGTTA 36563 | ||||||| ACACCTTTTT .......... .......... .......... .......... .......... 156 AGTTCGATTT TATGTATTAA CTAATTTACT TAATTAATTT TTAAATATAT TAAATTATTA 36503 .......... .......... .......... .......... .......... .......... 156 ATTAAATTAA TAAAAATATT TTTATTAAGT TTTGGTCTTT AATAATTTAG TTTTTGATTT 36443 .......... .......... .......... .......... .......... .......... 156 AAATCAATTC AAGATATTCA TAAAATAAAA ATATAATTTT TTTAATAATT TAACGCGATA 36383 .......... .......... .......... .......... .......... .......... 156 AAGGATAATG TAAATTTAAG GGCAATTTTA ACATATAGCA AAAATAAAAT TTAAAATTTG 36323 .......... .......... .......... .......... .......... .......... 156 TATGTTATAG TCATAGCAAA CATATATATA TATATAGAGA GAGAGAGTTC GCTATTCATA 36263 .......... .......... .......... .......... .......... .......... 156 TACAATTGAA AGTTATGCCT ATTTCAACTA TACATATATA CAAAGAAACA ATTGTATAAT 36203 .......... .......... .......... .......... .......... .......... 156 TCGTTGGTTA CTCTTCAGAT TGTATAATTT CACTGACAGA CCATTTGTAT AAGTTGTTGT 36143 .......... .......... .......... .......... .......... .......... 156 TAGCCTCTCA ATTCAACTGC ATGTGTTTGT ATATCTGTAT AAAATTTAAA TTTGTCTACA 36083 .......... .......... .......... .......... .......... .......... 156 ATTGAATCGA ATTATATAAA ACGAGAAAGA GAGAAATTTT ATACAATTCA AATTTGTAAT 36023 .......... .......... .......... .......... .......... .......... 156 AACGAGAAAG AGAGAAAGAC ATTTGGGCAT GGGAATATAC AATTGAATCG AATTGTATAA 35963 .......... .......... .......... .......... .......... .......... 156 AACGAGAAAG AAAAAAATTA TATACAATTT GAATTTGTAT CAAACGAGAA AGAGAGAAAT 35903 .......... .......... .......... .......... .......... .......... 156 GCAAAAGAGT CTTAGGCATG GAAAATTTGT ATTGTATAAT CATAAGTGTA TCGGATGGAG 35843 .......... .......... .......... .......... .......... .......... 156 ATATATGTAT ATGCATATGT ATATACAAAT TTCTCTCGCT TAATACAAAC GGAAACACAA 35783 |||| | | ||||| | ||| | ||||| | || ||||| .......... ....ATATAT AAATACATAC TTCATATATT TAATATACAC ACAAACATC- 201 TTTGTACAAT TTTATTGTAT AAAGTGAGAG AGGCGAGCGA CAAGGAGCTA GCGAGAGAAG 35723 ||| TTT....... .......... .......... .......... .......... .......... 204 GAGAGTGGCA AGCGAGAATA TGAGGGAGAG AGGGACTGAT AAATAGTTTG TTATGTAACA 35663 .......... .......... .......... .......... .......... .......... 204 CAAATAAATC AATCGGTAGC TACTGTATTT ATTTCACTAT TAGTTTGTCA TTTTATACAA 35603 .......... .......... .......... .......... .......... .......... 204 TTATCTCTAA ATTTGAATAC TCTTATAAAA TAGACATAGC ACTATTAACT AATAGAAAAA 35543 .......... .......... .......... .......... .......... .......... 204 AATTATATAA GTGCAATACA AATAAAAAAA CAAAATAATA ATGTGAATCG AAGGCTAAAT 35483 .......... .......... .......... .......... .......... .......... 204 AGTAAATGTG TAATGTACTG ATAATAAAAT TTAATATCTA TCTAGGGAAA ATGAGTAAAT 35423 .......... .......... .......... .......... .......... .......... 204 TACTACAATT TTATTAGGTT ATTTGATAAA ACCCAATATT AAAAAAATTA AAATTCAATA 35363 | ||| | | |||| || .......... .......... .......... .......... ...ATAATAA CATTTCATTA 221 -AAAAATTAT AAAATCATTA AAGAATA-AT GACTCAATAT CATATACTTC CTTCGTTCAG 35305 || ||| | || || | |||| | | | || | || |||| | || | | TAATAATATT AAGTTCTCTT TGAAATATTT GGATTAAAAA CA-GTACTCC CTCCATCTGA 280 AATTGTTTGT CATGTTGCGC TTATTAAAAG TCAATTTGAC TAATTTTTAA AGGTAAATTA 35245 |||| || || |||||| || |||| ||||| ||||||| || || |||| || ||||||||| AATTATTAGT CATGTTATGC TTATCAAAAG TCAATTTAAC TAGTTTTCAA AGGTAAATTG 340 GATAACATTA ATTCGATATT TTAAACAAAA A-A--A-AAA TTCTAAAACT ATATGAAAAG 35189 ||| || || |||||||||| ||||| |||| | | | | | |||||||||| |||||||||| GATCACTATA ATTCGATATT TTAAATAAAA ATACTAGATA TTCTAAAACT ATATGAAAAG 400 TACTATAAAT --TAATTTTT TTTACATATT AATATGA-TA AAAAAATACA TCTTAAAACA 35132 |||| ||||| |||||||| |||||||||| ||||||| || |||||||||| || TACTGTAAAT CATAATTTTT TTTACATATT AATATGATTA AAAAAATACA TC........ 452 TTAGTCAAAG TTTTTATAGT TTGAATCTAA AAATAGAAAC CATGACAAAT AATATCGGAC 35072 .......... .......... .......... .......... .......... .......... 452 GGAGGAAGTA CTTTTTATTT AATTTATTGA CCATTTTGAT TTCTACACAC CTCAAATAAA 35012 .......... .......... .......... .......... .......... .......... 452 TCAGTATGAA TTGTAAGGGG AAAATGACAT ATATATATAT ATATATACAC ACACACACAC 34952 .......... .......... .......... .......... .......... .......... 452 TATCGTAAAT GGTATGTAAA TATCCTTCGT CATATTTTTG GAACATTGAT GTCCCCATCG 34892 .......... .......... .......... .......... .......... .......... 452 CTCAAACTAA AACATATATA CCCTTTATAT TATTAGACAT ACATGTGTTA TAATTTTTTC 34832 .......... .......... .......... .......... .......... .......... 452 TACCGATCAG ACATTTATTA AATATCGAAT CAACATATAA GATTACGCTA AGTATTCCTA 34772 .......... .......... .......... .......... .......... .......... 452 TTTAGTCTTC TGTTACAATG GAGTATATAT ATGCTTTAGT TTTTGGACGA TAAAAATATC 34712 .......... .......... .......... .......... .......... .......... 452 AATACCCTAA TAATACAATA AAATATATCT TGATATCGTC TATAATTGTT CAAAAGTATA 34652 .......... .......... .......... .......... .......... .......... 452 TTTATTTATT TTTCCTAAAT TGTATTAACA CATATAGTAT TGATTGAAAC TTGAAAGCAA 34592 .......... .......... .......... .......... .......... .......... 452 CATATATGTA TTTGCTATAA AATTTAAAAT GTTGTTATAG TTTAATTTGT CACATCGCAA 34532 .......... .......... .......... .......... .......... .......... 452 AATTTTTAAG GCCCGAAAAA ATTGGTAAAA AGAAAAAGGG TAATTGCCTA ATTTCTTTTA 34472 .......... .......... .......... .......... .......... .......... 452 GTGGAAATAA TAAAACGAGG AAACAGAAAA AAATAAAAAA TTATCATTTA TTGGGGATGA 34412 .......... .......... .......... .......... .......... .......... 452 AAAAAAAAGA GATTCTTTTT GGTAAGTAAG AAAAAATCTC GTGGCATTTG GCATAACATG 34352 .......... .......... .......... .......... .......... .......... 452 TCATCAATTT AAGTTTGTAG ACTCTTGAAA GTTCTTTTTT TTTTTAATAA TAGGAAAATT 34292 .......... .......... .......... .......... .......... .......... 452 ATTTATGGCT ATTTTTCTTC AAAATTTTAA CTTTTGAGGA TATAATTTGT CTTGTCATTT 34232 .......... .......... .......... .......... .......... .......... 452 GAACTGGTGT GTGCATTCAA TTTTTCGCTT CGTTCTTATA TTATTTGGTT TAGATTTTTT 34172 .......... .......... .......... .......... .......... .......... 452 ATTTTTGATT TTGAAGAAGT GTAAGTTAAT TCAAATCAAA ATAAATTTGA TTTGATTTGA 34112 .......... .......... .......... .......... .......... .......... 452 ATTTTCTCTT TTGGGTTTGA TTTTTTTTCG ATTTGGTTAA TCGATTACGT CAATAGTTAT 34052 .......... .......... .......... .......... .......... .......... 452 AAATATAACA AAGTTATATT TGTAATTT-T TTAAAAAAAT ATATAAATAT ATGTAGAGAA 33993 | ||||| |||||| || |||||| | | || ||| | | | || .......... ...TAATATT AATAATTTGA TTCTAAAAAT AGA-AATTAT AACGA-ACAA 497 TATTGAATTT CGTAA 33978 || || | |||| TAATGGAGGG AGTAA 512 hqPGS_C08HBa0320P23.1-_SGN-E285125+ (35379 35140) ******************************************************************************** EST sequence 22 +strand 667 n (File: SGN-E372517+) 1 CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 61 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 121 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 181 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGTTCTTGCC GACTTTGTAT 241 TAAAAGCAGT TATGCCGAAG CTGTCAGAGG GGATCCTAAC TCGGATGCAA TTGATGTTGT 301 AGCAGATGTT AAGACTGAAC GAATTGTAGT TATAGGAGGC AGCGGCTTTG TTGGCTCTGC 361 AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA GATCAGGGCG 421 TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAGGAG ATGTTTTCTA 481 TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAGTT GTTTCAACTT TAGGAGGTTT 541 TGGTTCTGAT GAACAAATGC TTAGGATCAA TGGTGAAGCT AATGTTGTGG CTGTCAATGC 601 TGCTAAAGAA TATGGGACCC CCTAAGTCAT ATTGATTTCT GTGCATGATT ACAATCTACC 661 ATCATTC Predicted gene structure (within gDNA segment 36071 to 41344): Exon 1 36671 36892 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 223 322 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 323 411 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 412 467 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 468 614 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 0.92) Exon 6 40682 40734 ( 53 n); cDNA 615 667 ( 53 n); score: 0.925 MATCH C08HBa0320P23.1+ SGN-E372517+ 0.994 667 1.000 C PGS_C08HBa0320P23.1+_SGN-E372517+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) Alignment (genomic DNA sequence = upper lines): CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 36730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 60 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 36790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 120 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 36850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 180 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGGTCAGTAT TCCTTGATTT 36910 |||||||||| |||||||||| |||||||||| |||||||||| || GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CG........ .......... 222 GGCTCAACTT CTAATGCTCT TTTATTTGTG ATTTGAGGTT TATGAGTTTT GAATTCTATT 36970 .......... .......... .......... .......... .......... .......... 222 CCATAGGTGG ATTTATTCGG GATTAAAGTC CTGAGATTAT AATTCCAAGT TAGATATCAA 37030 .......... .......... .......... .......... .......... .......... 222 GTATTAAGCC TACAATAAAA TTTATAATCA TTTTTGGTTG ATAGGATTAA CTTATACCAT 37090 .......... .......... .......... .......... .......... .......... 222 CAACGAAATG CAGTATAAAT TTGGTTCGGG ATTAATCCTT GTATATCCCA AGTTATTGGA 37150 .......... .......... .......... .......... .......... .......... 222 TTCTAAATTA ATAATTTAGG TATATTTAGT TGATTTTTGA TATAAATTCA AGGTTTGGAT 37210 .......... .......... .......... .......... .......... .......... 222 CGGTTCACCG GAGAGCTAGC TCCGCTCCCA GTACTTTTTG GGCTGTAATT TGTCTAGGAT 37270 .......... .......... .......... .......... .......... .......... 222 GGTTGAAAAG AGCTTGCTGA TTGAATAAGA ATATGACAAA CAAAAAATCA CACTGCCTCA 37330 .......... .......... .......... .......... .......... .......... 222 GGGAAAGAGA AAGGAAATAC TATTCAAAAC CTAACCTAAT GGTTGTAATT TAGTTTCTTT 37390 .......... .......... .......... .......... .......... .......... 222 AAGAGTTGTA GAGGCAGGCT TCTCATTTCT CAAATGTTAC ACCATTTATC TTGATGAAAA 37450 .......... .......... .......... .......... .......... .......... 222 CATTTATCGT TTGATCAGTT ATTGTTACAC ACTCGAGAAA TTAAGATCTC TTGGTCACTT 37510 .......... .......... .......... .......... .......... .......... 222 ACAAAATGAA TAGAAGAAAA TGGTCTTTCT AGTTACTACA TGAAGAGTTA CTATAAGTCA 37570 .......... .......... .......... .......... .......... .......... 222 ACATAGCTAA CAGTTCTAAA AAAAAATTAA GAAGTTTGAG AAGATTATAG TCAAAGGGAA 37630 .......... .......... .......... .......... .......... .......... 222 AATTGTTTAA TTCCCCAAAT AGTAACACCT TAATATAAAG TGGGGCGGAG GGAATATAAA 37690 .......... .......... .......... .......... .......... .......... 222 TGATCCACAT AAAATGTACA TGACCATGCT GTTCCAGATC AATCAATCAA TGAACCAAAC 37750 .......... .......... .......... .......... .......... .......... 222 TACCCCTCAG TCTCAAATTA GTTGGGGATA GTCATTTCGC TCTTTTAAGG TCCATTTACC 37810 .......... .......... .......... .......... .......... .......... 222 TCTAAGAGTA TTCATTATAT GGTTATTTGG AGTACTACTT TTTGGCTGTC TGTCTACATA 37870 .......... .......... .......... .......... .......... .......... 222 CAATGACCTT TTTCCTTTAT CTGATCATGA AGTTTTGTAA AACTCACGCA TGTGGAGTTG 37930 .......... .......... .......... .......... .......... .......... 222 GTTTTCAAAA TCCTAACAAA GGTAAGGAAT GCAGATTAAA AAATTAGAAT TTCAGCTTTA 37990 .......... .......... .......... .......... .......... .......... 222 AAAATAATGT ACAAAGAAAA CTAAGAATTA TATCGTCAGT GTATATAGAA ATAAAAGAGT 38050 .......... .......... .......... .......... .......... .......... 222 GATCATTCAG ATTGTCAGTT CTGTACCTTA GCAATTGTTG TCACATCATG TTCCAGGATG 38110 .......... .......... .......... .......... .......... .......... 222 ATCTTTTTGA TTTTTTAGTT CCATGTCAGG CATAGTTGAA TTTTCTTTCT TTCCTTTTTC 38170 .......... .......... .......... .......... .......... .......... 222 CACAGCAGAA GCGAGATATG TAGATCTGCA CAGAAAACTA TATCCTTTGA AAGACTAAAC 38230 .......... .......... .......... .......... .......... .......... 222 TAGTTTTCTG AGAACTGGAT TAAGGTTCCA AGTAAAACTG TATGCGCTGT ATTCGCAATC 38290 .......... .......... .......... .......... .......... .......... 222 TTTGGGATGA TCAGAATTCT AGCCTGACAT GTTTGCAATG TTTCTCTTCT TTTTAGTTCT 38350 |||| .......... .......... .......... .......... .......... ......TTCT 226 TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 38410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 286 GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGAGTAT TACTTCATGA CTTAAGCATC 38470 |||||||||| |||||||||| |||||||||| |||||| GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGA.... .......... .......... 322 TTCTCTTTCT CCTTTTGAGA TCAAATCCAT TTACAACTGT CTCAATAGCA ACTACTTGTC 38530 .......... .......... .......... .......... .......... .......... 322 ATTCACTTTT TTTTTCTTTT TTCTTTTAAC AGATTGTAGT TATAGGAGGC AGCGGCTTTG 38590 |||||||| |||||||||| |||||||||| .......... .......... .......... ..ATTGTAGT TATAGGAGGC AGCGGCTTTG 350 TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 38650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 410 GGTATTTTTA ATACATGACT GAGCAGTTCA ATAGGGATTT CAATGAATAA AAGAATCTTT 38710 | G......... .......... .......... .......... .......... .......... 411 ATAGATTGAA TGTGATGGAT CTTAAACATT TTCTGTTGAT TCAGAAGGAT CTATACAATT 38770 .......... .......... .......... .......... .......... .......... 411 GCTCTATCCT CTTATGCTAC TTTTTCGTAT TATGGGTTCT CAAATTTTAG TATTTCCTAC 38830 .......... .......... .......... .......... .......... .......... 411 TCAGATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 38890 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 467 GCAGGTTCAT TTCTTCATCA TGCACTTGAG TAGGTTGACA ATGAATTCAA TTAAAAGATT 38950 .......... .......... .......... .......... .......... .......... 467 TACATGGATG AAATCAATGT AGAAGTTGGT TTCCAGGCCC TCTTTCTGAT GAAAGCCATC 39010 .......... .......... .......... .......... .......... .......... 467 GTAGTTCATT GAGAATGGAT AATAATGTTA TTGATGAATG AATCCCCCAT ATATTTTTTG 39070 .......... .......... .......... .......... .......... .......... 467 GTTGGTGTGT GCAGTGGTGG ATCTAGGATT TTGAGGTTAT TGTGTGCTCT GAAAGTTGTG 39130 .......... .......... .......... .......... .......... .......... 467 GAGTCAAAAA TATAAAATGG ATAATAATGT TATTGATGAA TGAATCCCAC ATATATTTTT 39190 .......... .......... .......... .......... .......... .......... 467 TGGTTGGTGT GTCATGTGTG TGTGGGGTAA ATGTGTTTGC TGAAGATACT TGAAGACTCT 39250 .......... .......... .......... .......... .......... .......... 467 CTCGCCACAC TAAATAACGG AAAGATTAAT CTACTGAAGT TCCTCATAGT CAAGCAAAGT 39310 .......... .......... .......... .......... .......... .......... 467 AACTCTGTCA CTAGAAAAAA AAGGTTCAGT TTACCCTTAA AGATGAATGG GGGGGGGGGG 39370 .......... .......... .......... .......... .......... .......... 467 CAGACTCTAT TTTGCAACCA TTTGAAAGAC CAAATATAAT TCTCTATTAT TCATTCTATG 39430 .......... .......... .......... .......... .......... .......... 467 ATTGAAGCCT AGAAGTCAAA ACATGTTGTC AAAAACTGGA TATTCAATCT TTGCCATAGT 39490 .......... .......... .......... .......... .......... .......... 467 CCATAGGTGA AGATTTACAA AAGGAGCAAG TTCTAAAGTT CCTTCAAACA ATATGAATCC 39550 .......... .......... .......... .......... .......... .......... 467 CGGACCAAAC AGGAGCGAAG AAGTGTAAAG AGTCTTTAAA CTACTGGACT GTTTTGCCTA 39610 .......... .......... .......... .......... .......... .......... 467 GTGTGGTTTT TATGGTCAAT TGGTCATATG CGAACTTGAA AGAGGATTCC AATTAAAACT 39670 .......... .......... .......... .......... .......... .......... 467 ACCTCTATCA GAAAAAAAGA AGATCCCATT AAAAGTAACA GATGTTATCT GTGTTGGTGT 39730 .......... .......... .......... .......... .......... .......... 467 AGTTTTGACT TTTGGTTTAA GTCCTTTTCT GATATTTTCC ACCCAATTCA GATTATTCAT 39790 .......... .......... .......... .......... .......... .......... 467 ATGATCATCT TATCATGCAG GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 39850 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 507 GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 39910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 567 CAATGGTGAA GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATGGTC AGTAGCTTTC 39970 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATGGTGAA GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATG... .......... 614 ATTTTATTTA TTTGAAGAAA TCTGTAAAGC TGAAGTGACC TTTAGTGATA AACTTTTGAG 40030 .......... .......... .......... .......... .......... .......... 614 TGGTTAGTTT TTGCAGTGCC TATCTTCTCT ATCTTATTTT TACTTTAACT TGCAATATAT 40090 .......... .......... .......... .......... .......... .......... 614 AATGAATCAG ATAAGTCATG CTTCCCTGTG ATGAAGCATG AGGCATGGTT GACTCCATTA 40150 .......... .......... .......... .......... .......... .......... 614 TTTACTTTAG CTCAGAGCTA AAGATTTTAA TGAGCAGAAA ATTCTGCTCG TCACTTCTAA 40210 .......... .......... .......... .......... .......... .......... 614 TTTAATGACA TTTACCAACT GAAGCAAAAG CTGAATCCGT CCCCAGATTG AAATAAAATG 40270 .......... .......... .......... .......... .......... .......... 614 CTTGAGTAAG TATAAATTGT AGGATATGCA TGAAGTAACT GCTATTATAG ATATTTTGCA 40330 .......... .......... .......... .......... .......... .......... 614 TTTCTCTTGC ACTGGCTGGG TGCTGGTCTG TTTATTAATA GAACTTAGCT TACTTATCAA 40390 .......... .......... .......... .......... .......... .......... 614 ACAACTATTA CTACCCCTTA ATGTTAAACT AGTTGGGATT CGTTATATAG AACTTCATGA 40450 .......... .......... .......... .......... .......... .......... 614 TCTATTTTTC TTCACCTAGA CCTGTTATCC AGTATTCAAT AATTTGGGAT TGTCTAAAAC 40510 .......... .......... .......... .......... .......... .......... 614 AGAGGTTCTC TACAATTTGC AATTAACAGT ATGGTACTGC TTTGCTGTGT TTAAGAACAA 40570 .......... .......... .......... .......... .......... .......... 614 CCCTTATGGC AGGTTTAAAC TAGTCATTTT GCACACCATG TTATCATTGT TCCCTTGTTT 40630 .......... .......... .......... .......... .......... .......... 614 CTCCATAACT ACTCATGCCA AGTGTTACAT TATATTTTTT GTTATTTGCA GGGACCCCTA 40690 ||||||| .......... .......... .......... .......... .......... .GGACCCCCT 623 AGTTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTC 40734 | ||||||| |||||||||| |||||||||| |||||||||| |||| AAGTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTC 667 hqPGS_C08HBa0320P23.1+_SGN-E372517+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) ******************************************************************************** EST sequence 63 +strand 571 n (File: SGN-E294142+) 1 CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 61 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 121 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 181 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGTTCTTGCC GACTTTGTAT 241 TAAAAGCAGT TATGCCGAAG CTGTCAGAGG GGATCCTAAC TCGGATGCAA TTGATGTTGT 301 AGCAGATGTT AAGACTGAAC GAATTGTAGT TATAGGAGGC AGCGGCTTTG TTGGCTCTGC 361 AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA GATCAGGGCG 421 TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAGGAG ATGTTTTCTA 481 TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAGTT GTTTCAACTT TAGGAGGTTT 541 TGGTTCTGAT GAACAAATGC TTAGGATCAA T Predicted gene structure (within gDNA segment 36071 to 40524): Exon 1 36671 36892 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 223 322 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 323 411 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 412 467 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39914 ( 104 n); cDNA 468 571 ( 104 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E294142+ 1.000 571 1.000 C PGS_C08HBa0320P23.1+_SGN-E294142+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39914) Alignment (genomic DNA sequence = upper lines): CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 36730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 60 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 36790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 120 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 36850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 180 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGGTCAGTAT TCCTTGATTT 36910 |||||||||| |||||||||| |||||||||| |||||||||| || GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CG........ .......... 222 GGCTCAACTT CTAATGCTCT TTTATTTGTG ATTTGAGGTT TATGAGTTTT GAATTCTATT 36970 .......... .......... .......... .......... .......... .......... 222 CCATAGGTGG ATTTATTCGG GATTAAAGTC CTGAGATTAT AATTCCAAGT TAGATATCAA 37030 .......... .......... .......... .......... .......... .......... 222 GTATTAAGCC TACAATAAAA TTTATAATCA TTTTTGGTTG ATAGGATTAA CTTATACCAT 37090 .......... .......... .......... .......... .......... .......... 222 CAACGAAATG CAGTATAAAT TTGGTTCGGG ATTAATCCTT GTATATCCCA AGTTATTGGA 37150 .......... .......... .......... .......... .......... .......... 222 TTCTAAATTA ATAATTTAGG TATATTTAGT TGATTTTTGA TATAAATTCA AGGTTTGGAT 37210 .......... .......... .......... .......... .......... .......... 222 CGGTTCACCG GAGAGCTAGC TCCGCTCCCA GTACTTTTTG GGCTGTAATT TGTCTAGGAT 37270 .......... .......... .......... .......... .......... .......... 222 GGTTGAAAAG AGCTTGCTGA TTGAATAAGA ATATGACAAA CAAAAAATCA CACTGCCTCA 37330 .......... .......... .......... .......... .......... .......... 222 GGGAAAGAGA AAGGAAATAC TATTCAAAAC CTAACCTAAT GGTTGTAATT TAGTTTCTTT 37390 .......... .......... .......... .......... .......... .......... 222 AAGAGTTGTA GAGGCAGGCT TCTCATTTCT CAAATGTTAC ACCATTTATC TTGATGAAAA 37450 .......... .......... .......... .......... .......... .......... 222 CATTTATCGT TTGATCAGTT ATTGTTACAC ACTCGAGAAA TTAAGATCTC TTGGTCACTT 37510 .......... .......... .......... .......... .......... .......... 222 ACAAAATGAA TAGAAGAAAA TGGTCTTTCT AGTTACTACA TGAAGAGTTA CTATAAGTCA 37570 .......... .......... .......... .......... .......... .......... 222 ACATAGCTAA CAGTTCTAAA AAAAAATTAA GAAGTTTGAG AAGATTATAG TCAAAGGGAA 37630 .......... .......... .......... .......... .......... .......... 222 AATTGTTTAA TTCCCCAAAT AGTAACACCT TAATATAAAG TGGGGCGGAG GGAATATAAA 37690 .......... .......... .......... .......... .......... .......... 222 TGATCCACAT AAAATGTACA TGACCATGCT GTTCCAGATC AATCAATCAA TGAACCAAAC 37750 .......... .......... .......... .......... .......... .......... 222 TACCCCTCAG TCTCAAATTA GTTGGGGATA GTCATTTCGC TCTTTTAAGG TCCATTTACC 37810 .......... .......... .......... .......... .......... .......... 222 TCTAAGAGTA TTCATTATAT GGTTATTTGG AGTACTACTT TTTGGCTGTC TGTCTACATA 37870 .......... .......... .......... .......... .......... .......... 222 CAATGACCTT TTTCCTTTAT CTGATCATGA AGTTTTGTAA AACTCACGCA TGTGGAGTTG 37930 .......... .......... .......... .......... .......... .......... 222 GTTTTCAAAA TCCTAACAAA GGTAAGGAAT GCAGATTAAA AAATTAGAAT TTCAGCTTTA 37990 .......... .......... .......... .......... .......... .......... 222 AAAATAATGT ACAAAGAAAA CTAAGAATTA TATCGTCAGT GTATATAGAA ATAAAAGAGT 38050 .......... .......... .......... .......... .......... .......... 222 GATCATTCAG ATTGTCAGTT CTGTACCTTA GCAATTGTTG TCACATCATG TTCCAGGATG 38110 .......... .......... .......... .......... .......... .......... 222 ATCTTTTTGA TTTTTTAGTT CCATGTCAGG CATAGTTGAA TTTTCTTTCT TTCCTTTTTC 38170 .......... .......... .......... .......... .......... .......... 222 CACAGCAGAA GCGAGATATG TAGATCTGCA CAGAAAACTA TATCCTTTGA AAGACTAAAC 38230 .......... .......... .......... .......... .......... .......... 222 TAGTTTTCTG AGAACTGGAT TAAGGTTCCA AGTAAAACTG TATGCGCTGT ATTCGCAATC 38290 .......... .......... .......... .......... .......... .......... 222 TTTGGGATGA TCAGAATTCT AGCCTGACAT GTTTGCAATG TTTCTCTTCT TTTTAGTTCT 38350 |||| .......... .......... .......... .......... .......... ......TTCT 226 TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 38410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 286 GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGAGTAT TACTTCATGA CTTAAGCATC 38470 |||||||||| |||||||||| |||||||||| |||||| GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGA.... .......... .......... 322 TTCTCTTTCT CCTTTTGAGA TCAAATCCAT TTACAACTGT CTCAATAGCA ACTACTTGTC 38530 .......... .......... .......... .......... .......... .......... 322 ATTCACTTTT TTTTTCTTTT TTCTTTTAAC AGATTGTAGT TATAGGAGGC AGCGGCTTTG 38590 |||||||| |||||||||| |||||||||| .......... .......... .......... ..ATTGTAGT TATAGGAGGC AGCGGCTTTG 350 TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 38650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 410 GGTATTTTTA ATACATGACT GAGCAGTTCA ATAGGGATTT CAATGAATAA AAGAATCTTT 38710 | G......... .......... .......... .......... .......... .......... 411 ATAGATTGAA TGTGATGGAT CTTAAACATT TTCTGTTGAT TCAGAAGGAT CTATACAATT 38770 .......... .......... .......... .......... .......... .......... 411 GCTCTATCCT CTTATGCTAC TTTTTCGTAT TATGGGTTCT CAAATTTTAG TATTTCCTAC 38830 .......... .......... .......... .......... .......... .......... 411 TCAGATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 38890 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 467 GCAGGTTCAT TTCTTCATCA TGCACTTGAG TAGGTTGACA ATGAATTCAA TTAAAAGATT 38950 .......... .......... .......... .......... .......... .......... 467 TACATGGATG AAATCAATGT AGAAGTTGGT TTCCAGGCCC TCTTTCTGAT GAAAGCCATC 39010 .......... .......... .......... .......... .......... .......... 467 GTAGTTCATT GAGAATGGAT AATAATGTTA TTGATGAATG AATCCCCCAT ATATTTTTTG 39070 .......... .......... .......... .......... .......... .......... 467 GTTGGTGTGT GCAGTGGTGG ATCTAGGATT TTGAGGTTAT TGTGTGCTCT GAAAGTTGTG 39130 .......... .......... .......... .......... .......... .......... 467 GAGTCAAAAA TATAAAATGG ATAATAATGT TATTGATGAA TGAATCCCAC ATATATTTTT 39190 .......... .......... .......... .......... .......... .......... 467 TGGTTGGTGT GTCATGTGTG TGTGGGGTAA ATGTGTTTGC TGAAGATACT TGAAGACTCT 39250 .......... .......... .......... .......... .......... .......... 467 CTCGCCACAC TAAATAACGG AAAGATTAAT CTACTGAAGT TCCTCATAGT CAAGCAAAGT 39310 .......... .......... .......... .......... .......... .......... 467 AACTCTGTCA CTAGAAAAAA AAGGTTCAGT TTACCCTTAA AGATGAATGG GGGGGGGGGG 39370 .......... .......... .......... .......... .......... .......... 467 CAGACTCTAT TTTGCAACCA TTTGAAAGAC CAAATATAAT TCTCTATTAT TCATTCTATG 39430 .......... .......... .......... .......... .......... .......... 467 ATTGAAGCCT AGAAGTCAAA ACATGTTGTC AAAAACTGGA TATTCAATCT TTGCCATAGT 39490 .......... .......... .......... .......... .......... .......... 467 CCATAGGTGA AGATTTACAA AAGGAGCAAG TTCTAAAGTT CCTTCAAACA ATATGAATCC 39550 .......... .......... .......... .......... .......... .......... 467 CGGACCAAAC AGGAGCGAAG AAGTGTAAAG AGTCTTTAAA CTACTGGACT GTTTTGCCTA 39610 .......... .......... .......... .......... .......... .......... 467 GTGTGGTTTT TATGGTCAAT TGGTCATATG CGAACTTGAA AGAGGATTCC AATTAAAACT 39670 .......... .......... .......... .......... .......... .......... 467 ACCTCTATCA GAAAAAAAGA AGATCCCATT AAAAGTAACA GATGTTATCT GTGTTGGTGT 39730 .......... .......... .......... .......... .......... .......... 467 AGTTTTGACT TTTGGTTTAA GTCCTTTTCT GATATTTTCC ACCCAATTCA GATTATTCAT 39790 .......... .......... .......... .......... .......... .......... 467 ATGATCATCT TATCATGCAG GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 39850 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 507 GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 39910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 567 CAAT 39914 |||| CAAT 571 hqPGS_C08HBa0320P23.1+_SGN-E294142+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39914) ******************************************************************************** EST sequence 37 +strand 521 n (File: SGN-E268176+) 1 CGGGCTGCAG GCAAAGTTCA ACTATTGCCT TTGCTATTCA TTTTCTTCCA TTGATTAGAT 61 AACTGCTCAA TCTCATCTCT GTGAACTGCG GAAGAGAAAA CTATGGCGAC TTTCTCAAAC 121 ATCGGTGCCA TTTGCAAAGT TACATCAGCT CCTTCTCTTA GCAGCACTAG TAGTAGAGCT 181 CTCTTTCCTA CGACTTTGCG CAGTTACAGT CATTCACAAG TCTCTCGCTC TCGTTCTTGC 241 CGACTTTGTA TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA 301 ATTGATGTTG TAGCAGATGT TAAGACTGAA CGAATTGTAG TTATAGGAGG CAGCGGCTTT 361 GTTGGCTCTG CAATATGCAA GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC 421 AGATCAGGGC GTCCCTCTAA ATCAGACTCA TGGGTAGATC AAGTCACTTG GATAACAGGA 481 GATGTTTTCT ATGCAAACTG GGATGAAGTA CTTATTGGGG C Predicted gene structure (within gDNA segment 35961 to 40463): Exon 1 36671 36892 ( 222 n); cDNA 12 233 ( 222 n); score: 0.991 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 234 333 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 334 422 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 423 478 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39853 ( 43 n); cDNA 479 521 ( 43 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E268176+ 0.996 510 0.979 C PGS_C08HBa0320P23.1+_SGN-E268176+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39853) Alignment (genomic DNA sequence = upper lines): CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 36730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTGCTCAAT 71 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 36790 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CTCATCTCTG TGAACTGCGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 131 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 36850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 191 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGGTCAGTAT TCCTTGATTT 36910 |||||||||| |||||||||| |||||||||| |||||||||| || GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CG........ .......... 233 GGCTCAACTT CTAATGCTCT TTTATTTGTG ATTTGAGGTT TATGAGTTTT GAATTCTATT 36970 .......... .......... .......... .......... .......... .......... 233 CCATAGGTGG ATTTATTCGG GATTAAAGTC CTGAGATTAT AATTCCAAGT TAGATATCAA 37030 .......... .......... .......... .......... .......... .......... 233 GTATTAAGCC TACAATAAAA TTTATAATCA TTTTTGGTTG ATAGGATTAA CTTATACCAT 37090 .......... .......... .......... .......... .......... .......... 233 CAACGAAATG CAGTATAAAT TTGGTTCGGG ATTAATCCTT GTATATCCCA AGTTATTGGA 37150 .......... .......... .......... .......... .......... .......... 233 TTCTAAATTA ATAATTTAGG TATATTTAGT TGATTTTTGA TATAAATTCA AGGTTTGGAT 37210 .......... .......... .......... .......... .......... .......... 233 CGGTTCACCG GAGAGCTAGC TCCGCTCCCA GTACTTTTTG GGCTGTAATT TGTCTAGGAT 37270 .......... .......... .......... .......... .......... .......... 233 GGTTGAAAAG AGCTTGCTGA TTGAATAAGA ATATGACAAA CAAAAAATCA CACTGCCTCA 37330 .......... .......... .......... .......... .......... .......... 233 GGGAAAGAGA AAGGAAATAC TATTCAAAAC CTAACCTAAT GGTTGTAATT TAGTTTCTTT 37390 .......... .......... .......... .......... .......... .......... 233 AAGAGTTGTA GAGGCAGGCT TCTCATTTCT CAAATGTTAC ACCATTTATC TTGATGAAAA 37450 .......... .......... .......... .......... .......... .......... 233 CATTTATCGT TTGATCAGTT ATTGTTACAC ACTCGAGAAA TTAAGATCTC TTGGTCACTT 37510 .......... .......... .......... .......... .......... .......... 233 ACAAAATGAA TAGAAGAAAA TGGTCTTTCT AGTTACTACA TGAAGAGTTA CTATAAGTCA 37570 .......... .......... .......... .......... .......... .......... 233 ACATAGCTAA CAGTTCTAAA AAAAAATTAA GAAGTTTGAG AAGATTATAG TCAAAGGGAA 37630 .......... .......... .......... .......... .......... .......... 233 AATTGTTTAA TTCCCCAAAT AGTAACACCT TAATATAAAG TGGGGCGGAG GGAATATAAA 37690 .......... .......... .......... .......... .......... .......... 233 TGATCCACAT AAAATGTACA TGACCATGCT GTTCCAGATC AATCAATCAA TGAACCAAAC 37750 .......... .......... .......... .......... .......... .......... 233 TACCCCTCAG TCTCAAATTA GTTGGGGATA GTCATTTCGC TCTTTTAAGG TCCATTTACC 37810 .......... .......... .......... .......... .......... .......... 233 TCTAAGAGTA TTCATTATAT GGTTATTTGG AGTACTACTT TTTGGCTGTC TGTCTACATA 37870 .......... .......... .......... .......... .......... .......... 233 CAATGACCTT TTTCCTTTAT CTGATCATGA AGTTTTGTAA AACTCACGCA TGTGGAGTTG 37930 .......... .......... .......... .......... .......... .......... 233 GTTTTCAAAA TCCTAACAAA GGTAAGGAAT GCAGATTAAA AAATTAGAAT TTCAGCTTTA 37990 .......... .......... .......... .......... .......... .......... 233 AAAATAATGT ACAAAGAAAA CTAAGAATTA TATCGTCAGT GTATATAGAA ATAAAAGAGT 38050 .......... .......... .......... .......... .......... .......... 233 GATCATTCAG ATTGTCAGTT CTGTACCTTA GCAATTGTTG TCACATCATG TTCCAGGATG 38110 .......... .......... .......... .......... .......... .......... 233 ATCTTTTTGA TTTTTTAGTT CCATGTCAGG CATAGTTGAA TTTTCTTTCT TTCCTTTTTC 38170 .......... .......... .......... .......... .......... .......... 233 CACAGCAGAA GCGAGATATG TAGATCTGCA CAGAAAACTA TATCCTTTGA AAGACTAAAC 38230 .......... .......... .......... .......... .......... .......... 233 TAGTTTTCTG AGAACTGGAT TAAGGTTCCA AGTAAAACTG TATGCGCTGT ATTCGCAATC 38290 .......... .......... .......... .......... .......... .......... 233 TTTGGGATGA TCAGAATTCT AGCCTGACAT GTTTGCAATG TTTCTCTTCT TTTTAGTTCT 38350 |||| .......... .......... .......... .......... .......... ......TTCT 237 TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 38410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 297 GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGAGTAT TACTTCATGA CTTAAGCATC 38470 |||||||||| |||||||||| |||||||||| |||||| GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGA.... .......... .......... 333 TTCTCTTTCT CCTTTTGAGA TCAAATCCAT TTACAACTGT CTCAATAGCA ACTACTTGTC 38530 .......... .......... .......... .......... .......... .......... 333 ATTCACTTTT TTTTTCTTTT TTCTTTTAAC AGATTGTAGT TATAGGAGGC AGCGGCTTTG 38590 |||||||| |||||||||| |||||||||| .......... .......... .......... ..ATTGTAGT TATAGGAGGC AGCGGCTTTG 361 TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 38650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 421 GGTATTTTTA ATACATGACT GAGCAGTTCA ATAGGGATTT CAATGAATAA AAGAATCTTT 38710 | G......... .......... .......... .......... .......... .......... 422 ATAGATTGAA TGTGATGGAT CTTAAACATT TTCTGTTGAT TCAGAAGGAT CTATACAATT 38770 .......... .......... .......... .......... .......... .......... 422 GCTCTATCCT CTTATGCTAC TTTTTCGTAT TATGGGTTCT CAAATTTTAG TATTTCCTAC 38830 .......... .......... .......... .......... .......... .......... 422 TCAGATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 38890 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 478 GCAGGTTCAT TTCTTCATCA TGCACTTGAG TAGGTTGACA ATGAATTCAA TTAAAAGATT 38950 .......... .......... .......... .......... .......... .......... 478 TACATGGATG AAATCAATGT AGAAGTTGGT TTCCAGGCCC TCTTTCTGAT GAAAGCCATC 39010 .......... .......... .......... .......... .......... .......... 478 GTAGTTCATT GAGAATGGAT AATAATGTTA TTGATGAATG AATCCCCCAT ATATTTTTTG 39070 .......... .......... .......... .......... .......... .......... 478 GTTGGTGTGT GCAGTGGTGG ATCTAGGATT TTGAGGTTAT TGTGTGCTCT GAAAGTTGTG 39130 .......... .......... .......... .......... .......... .......... 478 GAGTCAAAAA TATAAAATGG ATAATAATGT TATTGATGAA TGAATCCCAC ATATATTTTT 39190 .......... .......... .......... .......... .......... .......... 478 TGGTTGGTGT GTCATGTGTG TGTGGGGTAA ATGTGTTTGC TGAAGATACT TGAAGACTCT 39250 .......... .......... .......... .......... .......... .......... 478 CTCGCCACAC TAAATAACGG AAAGATTAAT CTACTGAAGT TCCTCATAGT CAAGCAAAGT 39310 .......... .......... .......... .......... .......... .......... 478 AACTCTGTCA CTAGAAAAAA AAGGTTCAGT TTACCCTTAA AGATGAATGG GGGGGGGGGG 39370 .......... .......... .......... .......... .......... .......... 478 CAGACTCTAT TTTGCAACCA TTTGAAAGAC CAAATATAAT TCTCTATTAT TCATTCTATG 39430 .......... .......... .......... .......... .......... .......... 478 ATTGAAGCCT AGAAGTCAAA ACATGTTGTC AAAAACTGGA TATTCAATCT TTGCCATAGT 39490 .......... .......... .......... .......... .......... .......... 478 CCATAGGTGA AGATTTACAA AAGGAGCAAG TTCTAAAGTT CCTTCAAACA ATATGAATCC 39550 .......... .......... .......... .......... .......... .......... 478 CGGACCAAAC AGGAGCGAAG AAGTGTAAAG AGTCTTTAAA CTACTGGACT GTTTTGCCTA 39610 .......... .......... .......... .......... .......... .......... 478 GTGTGGTTTT TATGGTCAAT TGGTCATATG CGAACTTGAA AGAGGATTCC AATTAAAACT 39670 .......... .......... .......... .......... .......... .......... 478 ACCTCTATCA GAAAAAAAGA AGATCCCATT AAAAGTAACA GATGTTATCT GTGTTGGTGT 39730 .......... .......... .......... .......... .......... .......... 478 AGTTTTGACT TTTGGTTTAA GTCCTTTTCT GATATTTTCC ACCCAATTCA GATTATTCAT 39790 .......... .......... .......... .......... .......... .......... 478 ATGATCATCT TATCATGCAG GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 39850 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 518 GGC 39853 ||| GGC 521 hqPGS_C08HBa0320P23.1+_SGN-E268176+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39853) ******************************************************************************** EST sequence 8 +strand 558 n (File: SGN-E304659+) 1 AAGTTCAACT ATTGCCTTTG CTATTCATTT TCTTCCATTG ATTAGATAAC TTCTCAATCT 61 CATCTCTGTG AACTGTGGAA GAGAAAACTA TGGCGACTTT CTCAAACATC GGTGCCATTT 121 GCAAAGTTAC ATCAGCTCCT TCTCTTAGCA GCACTAGTAG TAGAGCTCTC TTTCCTACGA 181 CTTTGCGCAG TTACAGTCAT TCACAAGTCT CTCGCTCTCG TTCTTGCCGA CTTTGTATTA 241 AAAGCAGTTA TGCCGAAGCT GTCAGAGGGG ATCCTAACTC GGATGCAATT GATGTTGTAG 301 CAGATGTTAA GACTGAACGA ATTGTAGTTA TAGGAGGCAG CGGCTTTGTT GGCTCTGCAA 361 TATGCAAGGC CGCAGTGTCA GAGGGTATAG AGGTCATAAG TCTGAGCAGA TCAGGGCGTC 421 CCTCTAAATC AGACTCATGG GTAGATCAAG TCACTTGGAT AACAGGAGAT GTTTTCTATG 481 CAAACTGGGA TGAAGTACTT ATTGGGGCTA CAGCAGTTGT TTCAACTTTA GGAGGTTTTG 541 GTTCTGATGA ACAAATGC Predicted gene structure (within gDNA segment 36073 to 40513): Exon 1 36673 36892 ( 220 n); cDNA 1 220 ( 220 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 221 320 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 321 409 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 410 465 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39903 ( 93 n); cDNA 466 558 ( 93 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E304659+ 1.000 558 1.000 C PGS_C08HBa0320P23.1+_SGN-E304659+ (36673 36892,38347 38446,38563 38651,38835 38890,39811 39903) Alignment (genomic DNA sequence = upper lines): AAGTTCAACT ATTGCCTTTG CTATTCATTT TCTTCCATTG ATTAGATAAC TTCTCAATCT 36732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCAACT ATTGCCTTTG CTATTCATTT TCTTCCATTG ATTAGATAAC TTCTCAATCT 60 CATCTCTGTG AACTGTGGAA GAGAAAACTA TGGCGACTTT CTCAAACATC GGTGCCATTT 36792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTCTGTG AACTGTGGAA GAGAAAACTA TGGCGACTTT CTCAAACATC GGTGCCATTT 120 GCAAAGTTAC ATCAGCTCCT TCTCTTAGCA GCACTAGTAG TAGAGCTCTC TTTCCTACGA 36852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGTTAC ATCAGCTCCT TCTCTTAGCA GCACTAGTAG TAGAGCTCTC TTTCCTACGA 180 CTTTGCGCAG TTACAGTCAT TCACAAGTCT CTCGCTCTCG GTCAGTATTC CTTGATTTGG 36912 |||||||||| |||||||||| |||||||||| |||||||||| CTTTGCGCAG TTACAGTCAT TCACAAGTCT CTCGCTCTCG .......... .......... 220 CTCAACTTCT AATGCTCTTT TATTTGTGAT TTGAGGTTTA TGAGTTTTGA ATTCTATTCC 36972 .......... .......... .......... .......... .......... .......... 220 ATAGGTGGAT TTATTCGGGA TTAAAGTCCT GAGATTATAA TTCCAAGTTA GATATCAAGT 37032 .......... .......... .......... .......... .......... .......... 220 ATTAAGCCTA CAATAAAATT TATAATCATT TTTGGTTGAT AGGATTAACT TATACCATCA 37092 .......... .......... .......... .......... .......... .......... 220 ACGAAATGCA GTATAAATTT GGTTCGGGAT TAATCCTTGT ATATCCCAAG TTATTGGATT 37152 .......... .......... .......... .......... .......... .......... 220 CTAAATTAAT AATTTAGGTA TATTTAGTTG ATTTTTGATA TAAATTCAAG GTTTGGATCG 37212 .......... .......... .......... .......... .......... .......... 220 GTTCACCGGA GAGCTAGCTC CGCTCCCAGT ACTTTTTGGG CTGTAATTTG TCTAGGATGG 37272 .......... .......... .......... .......... .......... .......... 220 TTGAAAAGAG CTTGCTGATT GAATAAGAAT ATGACAAACA AAAAATCACA CTGCCTCAGG 37332 .......... .......... .......... .......... .......... .......... 220 GAAAGAGAAA GGAAATACTA TTCAAAACCT AACCTAATGG TTGTAATTTA GTTTCTTTAA 37392 .......... .......... .......... .......... .......... .......... 220 GAGTTGTAGA GGCAGGCTTC TCATTTCTCA AATGTTACAC CATTTATCTT GATGAAAACA 37452 .......... .......... .......... .......... .......... .......... 220 TTTATCGTTT GATCAGTTAT TGTTACACAC TCGAGAAATT AAGATCTCTT GGTCACTTAC 37512 .......... .......... .......... .......... .......... .......... 220 AAAATGAATA GAAGAAAATG GTCTTTCTAG TTACTACATG AAGAGTTACT ATAAGTCAAC 37572 .......... .......... .......... .......... .......... .......... 220 ATAGCTAACA GTTCTAAAAA AAAATTAAGA AGTTTGAGAA GATTATAGTC AAAGGGAAAA 37632 .......... .......... .......... .......... .......... .......... 220 TTGTTTAATT CCCCAAATAG TAACACCTTA ATATAAAGTG GGGCGGAGGG AATATAAATG 37692 .......... .......... .......... .......... .......... .......... 220 ATCCACATAA AATGTACATG ACCATGCTGT TCCAGATCAA TCAATCAATG AACCAAACTA 37752 .......... .......... .......... .......... .......... .......... 220 CCCCTCAGTC TCAAATTAGT TGGGGATAGT CATTTCGCTC TTTTAAGGTC CATTTACCTC 37812 .......... .......... .......... .......... .......... .......... 220 TAAGAGTATT CATTATATGG TTATTTGGAG TACTACTTTT TGGCTGTCTG TCTACATACA 37872 .......... .......... .......... .......... .......... .......... 220 ATGACCTTTT TCCTTTATCT GATCATGAAG TTTTGTAAAA CTCACGCATG TGGAGTTGGT 37932 .......... .......... .......... .......... .......... .......... 220 TTTCAAAATC CTAACAAAGG TAAGGAATGC AGATTAAAAA ATTAGAATTT CAGCTTTAAA 37992 .......... .......... .......... .......... .......... .......... 220 AATAATGTAC AAAGAAAACT AAGAATTATA TCGTCAGTGT ATATAGAAAT AAAAGAGTGA 38052 .......... .......... .......... .......... .......... .......... 220 TCATTCAGAT TGTCAGTTCT GTACCTTAGC AATTGTTGTC ACATCATGTT CCAGGATGAT 38112 .......... .......... .......... .......... .......... .......... 220 CTTTTTGATT TTTTAGTTCC ATGTCAGGCA TAGTTGAATT TTCTTTCTTT CCTTTTTCCA 38172 .......... .......... .......... .......... .......... .......... 220 CAGCAGAAGC GAGATATGTA GATCTGCACA GAAAACTATA TCCTTTGAAA GACTAAACTA 38232 .......... .......... .......... .......... .......... .......... 220 GTTTTCTGAG AACTGGATTA AGGTTCCAAG TAAAACTGTA TGCGCTGTAT TCGCAATCTT 38292 .......... .......... .......... .......... .......... .......... 220 TGGGATGATC AGAATTCTAG CCTGACATGT TTGCAATGTT TCTCTTCTTT TTAGTTCTTG 38352 |||||| .......... .......... .......... .......... .......... ....TTCTTG 226 CCGACTTTGT ATTAAAAGCA GTTATGCCGA AGCTGTCAGA GGGGATCCTA ACTCGGATGC 38412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACTTTGT ATTAAAAGCA GTTATGCCGA AGCTGTCAGA GGGGATCCTA ACTCGGATGC 286 AATTGATGTT GTAGCAGATG TTAAGACTGA ACGAGTATTA CTTCATGACT TAAGCATCTT 38472 |||||||||| |||||||||| |||||||||| |||| AATTGATGTT GTAGCAGATG TTAAGACTGA ACGA...... .......... .......... 320 CTCTTTCTCC TTTTGAGATC AAATCCATTT ACAACTGTCT CAATAGCAAC TACTTGTCAT 38532 .......... .......... .......... .......... .......... .......... 320 TCACTTTTTT TTTCTTTTTT CTTTTAACAG ATTGTAGTTA TAGGAGGCAG CGGCTTTGTT 38592 |||||||||| |||||||||| |||||||||| .......... .......... .......... ATTGTAGTTA TAGGAGGCAG CGGCTTTGTT 350 GGCTCTGCAA TATGCAAGGC CGCAGTGTCA GAGGGTATAG AGGTCATAAG TCTGAGCAGG 38652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGCTCTGCAA TATGCAAGGC CGCAGTGTCA GAGGGTATAG AGGTCATAAG TCTGAGCAG. 409 TATTTTTAAT ACATGACTGA GCAGTTCAAT AGGGATTTCA ATGAATAAAA GAATCTTTAT 38712 .......... .......... .......... .......... .......... .......... 409 AGATTGAATG TGATGGATCT TAAACATTTT CTGTTGATTC AGAAGGATCT ATACAATTGC 38772 .......... .......... .......... .......... .......... .......... 409 TCTATCCTCT TATGCTACTT TTTCGTATTA TGGGTTCTCA AATTTTAGTA TTTCCTACTC 38832 .......... .......... .......... .......... .......... .......... 409 AGATCAGGGC GTCCCTCTAA ATCAGACTCA TGGGTAGATC AAGTCACTTG GATAACAGGC 38892 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ..ATCAGGGC GTCCCTCTAA ATCAGACTCA TGGGTAGATC AAGTCACTTG GATAACAG.. 465 AGGTTCATTT CTTCATCATG CACTTGAGTA GGTTGACAAT GAATTCAATT AAAAGATTTA 38952 .......... .......... .......... .......... .......... .......... 465 CATGGATGAA ATCAATGTAG AAGTTGGTTT CCAGGCCCTC TTTCTGATGA AAGCCATCGT 39012 .......... .......... .......... .......... .......... .......... 465 AGTTCATTGA GAATGGATAA TAATGTTATT GATGAATGAA TCCCCCATAT ATTTTTTGGT 39072 .......... .......... .......... .......... .......... .......... 465 TGGTGTGTGC AGTGGTGGAT CTAGGATTTT GAGGTTATTG TGTGCTCTGA AAGTTGTGGA 39132 .......... .......... .......... .......... .......... .......... 465 GTCAAAAATA TAAAATGGAT AATAATGTTA TTGATGAATG AATCCCACAT ATATTTTTTG 39192 .......... .......... .......... .......... .......... .......... 465 GTTGGTGTGT CATGTGTGTG TGGGGTAAAT GTGTTTGCTG AAGATACTTG AAGACTCTCT 39252 .......... .......... .......... .......... .......... .......... 465 CGCCACACTA AATAACGGAA AGATTAATCT ACTGAAGTTC CTCATAGTCA AGCAAAGTAA 39312 .......... .......... .......... .......... .......... .......... 465 CTCTGTCACT AGAAAAAAAA GGTTCAGTTT ACCCTTAAAG ATGAATGGGG GGGGGGGGCA 39372 .......... .......... .......... .......... .......... .......... 465 GACTCTATTT TGCAACCATT TGAAAGACCA AATATAATTC TCTATTATTC ATTCTATGAT 39432 .......... .......... .......... .......... .......... .......... 465 TGAAGCCTAG AAGTCAAAAC ATGTTGTCAA AAACTGGATA TTCAATCTTT GCCATAGTCC 39492 .......... .......... .......... .......... .......... .......... 465 ATAGGTGAAG ATTTACAAAA GGAGCAAGTT CTAAAGTTCC TTCAAACAAT ATGAATCCCG 39552 .......... .......... .......... .......... .......... .......... 465 GACCAAACAG GAGCGAAGAA GTGTAAAGAG TCTTTAAACT ACTGGACTGT TTTGCCTAGT 39612 .......... .......... .......... .......... .......... .......... 465 GTGGTTTTTA TGGTCAATTG GTCATATGCG AACTTGAAAG AGGATTCCAA TTAAAACTAC 39672 .......... .......... .......... .......... .......... .......... 465 CTCTATCAGA AAAAAAGAAG ATCCCATTAA AAGTAACAGA TGTTATCTGT GTTGGTGTAG 39732 .......... .......... .......... .......... .......... .......... 465 TTTTGACTTT TGGTTTAAGT CCTTTTCTGA TATTTTCCAC CCAATTCAGA TTATTCATAT 39792 .......... .......... .......... .......... .......... .......... 465 GATCATCTTA TCATGCAGGA GATGTTTTCT ATGCAAACTG GGATGAAGTA CTTATTGGGG 39852 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA GATGTTTTCT ATGCAAACTG GGATGAAGTA CTTATTGGGG 507 CTACAGCAGT TGTTTCAACT TTAGGAGGTT TTGGTTCTGA TGAACAAATG C 39903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTACAGCAGT TGTTTCAACT TTAGGAGGTT TTGGTTCTGA TGAACAAATG C 558 hqPGS_C08HBa0320P23.1+_SGN-E304659+ (36673 36892,38347 38446,38563 38651,38835 38890,39811 39903) ******************************************************************************** EST sequence 7 +strand 724 n (File: SGN-E210773+) 1 TCAACTATTG CCTTTGCTAT TCATTTTCTT CCATTGATTA GATAACTTCT CAATCTCATC 61 TCTGTGAACT GTGGAAGAGA AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA 121 AGTTACATCA GCTCCTTCTC TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT 181 GCGCAGTTAC AGTCATTCAC AAGTCTCTCG CTCTCGTTCT TGCCGACTTT GTATTAAAAG 241 CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT GCAATTGATG TTGTAGCAGA 301 TGTTAAGACT GAACGAATTG TAGTTATAGG AGGCAGCGGC TTTGTTGGCT CTGCAATATG 361 CAAGGCCGCA GTGTCAGAGG GTATAGAGGT CATAAGTCTG AGCAGATCAG GGCGTCCCTC 421 TAAATCAGAC TCATGGGTAG ATCAAGTCAC TTGGATAACA GGAGATGTTT TCTATGCAAA 481 CTGGGATGAA GTACTTATTG GGGCTACAGC AGTTGTTTCA ACTTTAGGAG GTTTTGGTTC 541 TGATGAACAA ATGCTTAGGA TCAATGGTGA AGCTAATGTT GTGGCTGTCA ATGCTGCTAA 601 AGAATATGGG ACCCCTAAGT TCATATTGAT TTCTGTGCAT GATTACAATC TACCATCATT 661 CCTCCAATCA AGTTACTTCA TAGGGAAAAG AAAAGCAGAA TCAGAAGTTC TTTCCAAATT 721 CCCT Predicted gene structure (within gDNA segment 36077 to 41407): Exon 1 36677 36892 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 217 316 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 317 405 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 406 461 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 462 608 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 40682 40797 ( 116 n); cDNA 609 724 ( 116 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E210773+ 1.000 724 1.000 C PGS_C08HBa0320P23.1+_SGN-E210773+ (36677 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40797) Alignment (genomic DNA sequence = upper lines): TCAACTATTG CCTTTGCTAT TCATTTTCTT CCATTGATTA GATAACTTCT CAATCTCATC 36736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTATTG CCTTTGCTAT TCATTTTCTT CCATTGATTA GATAACTTCT CAATCTCATC 60 TCTGTGAACT GTGGAAGAGA AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA 36796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTGAACT GTGGAAGAGA AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA 120 AGTTACATCA GCTCCTTCTC TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT 36856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACATCA GCTCCTTCTC TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT 180 GCGCAGTTAC AGTCATTCAC AAGTCTCTCG CTCTCGGTCA GTATTCCTTG ATTTGGCTCA 36916 |||||||||| |||||||||| |||||||||| |||||| GCGCAGTTAC AGTCATTCAC AAGTCTCTCG CTCTCG.... .......... .......... 216 ACTTCTAATG CTCTTTTATT TGTGATTTGA GGTTTATGAG TTTTGAATTC TATTCCATAG 36976 .......... .......... .......... .......... .......... .......... 216 GTGGATTTAT TCGGGATTAA AGTCCTGAGA TTATAATTCC AAGTTAGATA TCAAGTATTA 37036 .......... .......... .......... .......... .......... .......... 216 AGCCTACAAT AAAATTTATA ATCATTTTTG GTTGATAGGA TTAACTTATA CCATCAACGA 37096 .......... .......... .......... .......... .......... .......... 216 AATGCAGTAT AAATTTGGTT CGGGATTAAT CCTTGTATAT CCCAAGTTAT TGGATTCTAA 37156 .......... .......... .......... .......... .......... .......... 216 ATTAATAATT TAGGTATATT TAGTTGATTT TTGATATAAA TTCAAGGTTT GGATCGGTTC 37216 .......... .......... .......... .......... .......... .......... 216 ACCGGAGAGC TAGCTCCGCT CCCAGTACTT TTTGGGCTGT AATTTGTCTA GGATGGTTGA 37276 .......... .......... .......... .......... .......... .......... 216 AAAGAGCTTG CTGATTGAAT AAGAATATGA CAAACAAAAA ATCACACTGC CTCAGGGAAA 37336 .......... .......... .......... .......... .......... .......... 216 GAGAAAGGAA ATACTATTCA AAACCTAACC TAATGGTTGT AATTTAGTTT CTTTAAGAGT 37396 .......... .......... .......... .......... .......... .......... 216 TGTAGAGGCA GGCTTCTCAT TTCTCAAATG TTACACCATT TATCTTGATG AAAACATTTA 37456 .......... .......... .......... .......... .......... .......... 216 TCGTTTGATC AGTTATTGTT ACACACTCGA GAAATTAAGA TCTCTTGGTC ACTTACAAAA 37516 .......... .......... .......... .......... .......... .......... 216 TGAATAGAAG AAAATGGTCT TTCTAGTTAC TACATGAAGA GTTACTATAA GTCAACATAG 37576 .......... .......... .......... .......... .......... .......... 216 CTAACAGTTC TAAAAAAAAA TTAAGAAGTT TGAGAAGATT ATAGTCAAAG GGAAAATTGT 37636 .......... .......... .......... .......... .......... .......... 216 TTAATTCCCC AAATAGTAAC ACCTTAATAT AAAGTGGGGC GGAGGGAATA TAAATGATCC 37696 .......... .......... .......... .......... .......... .......... 216 ACATAAAATG TACATGACCA TGCTGTTCCA GATCAATCAA TCAATGAACC AAACTACCCC 37756 .......... .......... .......... .......... .......... .......... 216 TCAGTCTCAA ATTAGTTGGG GATAGTCATT TCGCTCTTTT AAGGTCCATT TACCTCTAAG 37816 .......... .......... .......... .......... .......... .......... 216 AGTATTCATT ATATGGTTAT TTGGAGTACT ACTTTTTGGC TGTCTGTCTA CATACAATGA 37876 .......... .......... .......... .......... .......... .......... 216 CCTTTTTCCT TTATCTGATC ATGAAGTTTT GTAAAACTCA CGCATGTGGA GTTGGTTTTC 37936 .......... .......... .......... .......... .......... .......... 216 AAAATCCTAA CAAAGGTAAG GAATGCAGAT TAAAAAATTA GAATTTCAGC TTTAAAAATA 37996 .......... .......... .......... .......... .......... .......... 216 ATGTACAAAG AAAACTAAGA ATTATATCGT CAGTGTATAT AGAAATAAAA GAGTGATCAT 38056 .......... .......... .......... .......... .......... .......... 216 TCAGATTGTC AGTTCTGTAC CTTAGCAATT GTTGTCACAT CATGTTCCAG GATGATCTTT 38116 .......... .......... .......... .......... .......... .......... 216 TTGATTTTTT AGTTCCATGT CAGGCATAGT TGAATTTTCT TTCTTTCCTT TTTCCACAGC 38176 .......... .......... .......... .......... .......... .......... 216 AGAAGCGAGA TATGTAGATC TGCACAGAAA ACTATATCCT TTGAAAGACT AAACTAGTTT 38236 .......... .......... .......... .......... .......... .......... 216 TCTGAGAACT GGATTAAGGT TCCAAGTAAA ACTGTATGCG CTGTATTCGC AATCTTTGGG 38296 .......... .......... .......... .......... .......... .......... 216 ATGATCAGAA TTCTAGCCTG ACATGTTTGC AATGTTTCTC TTCTTTTTAG TTCTTGCCGA 38356 |||||||||| .......... .......... .......... .......... .......... TTCTTGCCGA 226 CTTTGTATTA AAAGCAGTTA TGCCGAAGCT GTCAGAGGGG ATCCTAACTC GGATGCAATT 38416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTATTA AAAGCAGTTA TGCCGAAGCT GTCAGAGGGG ATCCTAACTC GGATGCAATT 286 GATGTTGTAG CAGATGTTAA GACTGAACGA GTATTACTTC ATGACTTAAG CATCTTCTCT 38476 |||||||||| |||||||||| |||||||||| GATGTTGTAG CAGATGTTAA GACTGAACGA .......... .......... .......... 316 TTCTCCTTTT GAGATCAAAT CCATTTACAA CTGTCTCAAT AGCAACTACT TGTCATTCAC 38536 .......... .......... .......... .......... .......... .......... 316 TTTTTTTTTC TTTTTTCTTT TAACAGATTG TAGTTATAGG AGGCAGCGGC TTTGTTGGCT 38596 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTG TAGTTATAGG AGGCAGCGGC TTTGTTGGCT 350 CTGCAATATG CAAGGCCGCA GTGTCAGAGG GTATAGAGGT CATAAGTCTG AGCAGGTATT 38656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTGCAATATG CAAGGCCGCA GTGTCAGAGG GTATAGAGGT CATAAGTCTG AGCAG..... 405 TTTAATACAT GACTGAGCAG TTCAATAGGG ATTTCAATGA ATAAAAGAAT CTTTATAGAT 38716 .......... .......... .......... .......... .......... .......... 405 TGAATGTGAT GGATCTTAAA CATTTTCTGT TGATTCAGAA GGATCTATAC AATTGCTCTA 38776 .......... .......... .......... .......... .......... .......... 405 TCCTCTTATG CTACTTTTTC GTATTATGGG TTCTCAAATT TTAGTATTTC CTACTCAGAT 38836 || .......... .......... .......... .......... .......... ........AT 407 CAGGGCGTCC CTCTAAATCA GACTCATGGG TAGATCAAGT CACTTGGATA ACAGGCAGGT 38896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CAGGGCGTCC CTCTAAATCA GACTCATGGG TAGATCAAGT CACTTGGATA ACAG...... 461 TCATTTCTTC ATCATGCACT TGAGTAGGTT GACAATGAAT TCAATTAAAA GATTTACATG 38956 .......... .......... .......... .......... .......... .......... 461 GATGAAATCA ATGTAGAAGT TGGTTTCCAG GCCCTCTTTC TGATGAAAGC CATCGTAGTT 39016 .......... .......... .......... .......... .......... .......... 461 CATTGAGAAT GGATAATAAT GTTATTGATG AATGAATCCC CCATATATTT TTTGGTTGGT 39076 .......... .......... .......... .......... .......... .......... 461 GTGTGCAGTG GTGGATCTAG GATTTTGAGG TTATTGTGTG CTCTGAAAGT TGTGGAGTCA 39136 .......... .......... .......... .......... .......... .......... 461 AAAATATAAA ATGGATAATA ATGTTATTGA TGAATGAATC CCACATATAT TTTTTGGTTG 39196 .......... .......... .......... .......... .......... .......... 461 GTGTGTCATG TGTGTGTGGG GTAAATGTGT TTGCTGAAGA TACTTGAAGA CTCTCTCGCC 39256 .......... .......... .......... .......... .......... .......... 461 ACACTAAATA ACGGAAAGAT TAATCTACTG AAGTTCCTCA TAGTCAAGCA AAGTAACTCT 39316 .......... .......... .......... .......... .......... .......... 461 GTCACTAGAA AAAAAAGGTT CAGTTTACCC TTAAAGATGA ATGGGGGGGG GGGGCAGACT 39376 .......... .......... .......... .......... .......... .......... 461 CTATTTTGCA ACCATTTGAA AGACCAAATA TAATTCTCTA TTATTCATTC TATGATTGAA 39436 .......... .......... .......... .......... .......... .......... 461 GCCTAGAAGT CAAAACATGT TGTCAAAAAC TGGATATTCA ATCTTTGCCA TAGTCCATAG 39496 .......... .......... .......... .......... .......... .......... 461 GTGAAGATTT ACAAAAGGAG CAAGTTCTAA AGTTCCTTCA AACAATATGA ATCCCGGACC 39556 .......... .......... .......... .......... .......... .......... 461 AAACAGGAGC GAAGAAGTGT AAAGAGTCTT TAAACTACTG GACTGTTTTG CCTAGTGTGG 39616 .......... .......... .......... .......... .......... .......... 461 TTTTTATGGT CAATTGGTCA TATGCGAACT TGAAAGAGGA TTCCAATTAA AACTACCTCT 39676 .......... .......... .......... .......... .......... .......... 461 ATCAGAAAAA AAGAAGATCC CATTAAAAGT AACAGATGTT ATCTGTGTTG GTGTAGTTTT 39736 .......... .......... .......... .......... .......... .......... 461 GACTTTTGGT TTAAGTCCTT TTCTGATATT TTCCACCCAA TTCAGATTAT TCATATGATC 39796 .......... .......... .......... .......... .......... .......... 461 ATCTTATCAT GCAGGAGATG TTTTCTATGC AAACTGGGAT GAAGTACTTA TTGGGGCTAC 39856 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAGATG TTTTCTATGC AAACTGGGAT GAAGTACTTA TTGGGGCTAC 507 AGCAGTTGTT TCAACTTTAG GAGGTTTTGG TTCTGATGAA CAAATGCTTA GGATCAATGG 39916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTTGTT TCAACTTTAG GAGGTTTTGG TTCTGATGAA CAAATGCTTA GGATCAATGG 567 TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT GGTCAGTAGC TTTCATTTTA 39976 |||||||||| |||||||||| |||||||||| |||||||||| | TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT G......... .......... 608 TTTATTTGAA GAAATCTGTA AAGCTGAAGT GACCTTTAGT GATAAACTTT TGAGTGGTTA 40036 .......... .......... .......... .......... .......... .......... 608 GTTTTTGCAG TGCCTATCTT CTCTATCTTA TTTTTACTTT AACTTGCAAT ATATAATGAA 40096 .......... .......... .......... .......... .......... .......... 608 TCAGATAAGT CATGCTTCCC TGTGATGAAG CATGAGGCAT GGTTGACTCC ATTATTTACT 40156 .......... .......... .......... .......... .......... .......... 608 TTAGCTCAGA GCTAAAGATT TTAATGAGCA GAAAATTCTG CTCGTCACTT CTAATTTAAT 40216 .......... .......... .......... .......... .......... .......... 608 GACATTTACC AACTGAAGCA AAAGCTGAAT CCGTCCCCAG ATTGAAATAA AATGCTTGAG 40276 .......... .......... .......... .......... .......... .......... 608 TAAGTATAAA TTGTAGGATA TGCATGAAGT AACTGCTATT ATAGATATTT TGCATTTCTC 40336 .......... .......... .......... .......... .......... .......... 608 TTGCACTGGC TGGGTGCTGG TCTGTTTATT AATAGAACTT AGCTTACTTA TCAAACAACT 40396 .......... .......... .......... .......... .......... .......... 608 ATTACTACCC CTTAATGTTA AACTAGTTGG GATTCGTTAT ATAGAACTTC ATGATCTATT 40456 .......... .......... .......... .......... .......... .......... 608 TTTCTTCACC TAGACCTGTT ATCCAGTATT CAATAATTTG GGATTGTCTA AAACAGAGGT 40516 .......... .......... .......... .......... .......... .......... 608 TCTCTACAAT TTGCAATTAA CAGTATGGTA CTGCTTTGCT GTGTTTAAGA ACAACCCTTA 40576 .......... .......... .......... .......... .......... .......... 608 TGGCAGGTTT AAACTAGTCA TTTTGCACAC CATGTTATCA TTGTTCCCTT GTTTCTCCAT 40636 .......... .......... .......... .......... .......... .......... 608 AACTACTCAT GCCAAGTGTT ACATTATATT TTTTGTTATT TGCAGGGACC CCTAAGTTCA 40696 ||||| |||||||||| .......... .......... .......... .......... .....GGACC CCTAAGTTCA 623 TATTGATTTC TGTGCATGAT TACAATCTAC CATCATTCCT CCAATCAAGT TACTTCATAG 40756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGATTTC TGTGCATGAT TACAATCTAC CATCATTCCT CCAATCAAGT TACTTCATAG 683 GGAAAAGAAA AGCAGAATCA GAAGTTCTTT CCAAATTCCC T 40797 |||||||||| |||||||||| |||||||||| |||||||||| | GGAAAAGAAA AGCAGAATCA GAAGTTCTTT CCAAATTCCC T 724 hqPGS_C08HBa0320P23.1+_SGN-E210773+ (36677 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40797) ******************************************************************************** EST sequence 52 +strand 654 n (File: SGN-E277026+) 1 TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 61 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 121 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 181 TACAGTCATT CACAAGTCTC TCGCTCTCGT TCTTGCCGAC TTTGTATTAA AAGCAGTTAT 241 GCCGAAGCTG TCAGAGGGGA TCCTAACTCG GATGCAATTG ATGTTGTAGC AGATGTTAAG 301 ACTGAACGAA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT ATGCAAGGCC 361 GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAGAT CAGGGCGTCC CTCTAAATCA 421 GACTCATGGG TAGATCAAGT CACTTGGATA ACAGGAGATG TTTTCTATGC AAACTGGGAT 481 GAAGTACTTA TTGGGGCTAC AGCAGTTGTT TCAACTTTAG GAGGTTTTGG TTCTGATGAA 541 CAAATGCTTA GGATCAATGG TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT 601 GGGACCCCTA AGTTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTC Predicted gene structure (within gDNA segment 36084 to 41344): Exon 1 36684 36892 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 210 309 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 310 398 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 399 454 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 455 601 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 40682 40734 ( 53 n); cDNA 602 654 ( 53 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E277026+ 1.000 654 1.000 C PGS_C08HBa0320P23.1+_SGN-E277026+ (36684 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) Alignment (genomic DNA sequence = upper lines): TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 36743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 60 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 36803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 120 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 36863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 180 TACAGTCATT CACAAGTCTC TCGCTCTCGG TCAGTATTCC TTGATTTGGC TCAACTTCTA 36923 |||||||||| |||||||||| ||||||||| TACAGTCATT CACAAGTCTC TCGCTCTCG. .......... .......... .......... 209 ATGCTCTTTT ATTTGTGATT TGAGGTTTAT GAGTTTTGAA TTCTATTCCA TAGGTGGATT 36983 .......... .......... .......... .......... .......... .......... 209 TATTCGGGAT TAAAGTCCTG AGATTATAAT TCCAAGTTAG ATATCAAGTA TTAAGCCTAC 37043 .......... .......... .......... .......... .......... .......... 209 AATAAAATTT ATAATCATTT TTGGTTGATA GGATTAACTT ATACCATCAA CGAAATGCAG 37103 .......... .......... .......... .......... .......... .......... 209 TATAAATTTG GTTCGGGATT AATCCTTGTA TATCCCAAGT TATTGGATTC TAAATTAATA 37163 .......... .......... .......... .......... .......... .......... 209 ATTTAGGTAT ATTTAGTTGA TTTTTGATAT AAATTCAAGG TTTGGATCGG TTCACCGGAG 37223 .......... .......... .......... .......... .......... .......... 209 AGCTAGCTCC GCTCCCAGTA CTTTTTGGGC TGTAATTTGT CTAGGATGGT TGAAAAGAGC 37283 .......... .......... .......... .......... .......... .......... 209 TTGCTGATTG AATAAGAATA TGACAAACAA AAAATCACAC TGCCTCAGGG AAAGAGAAAG 37343 .......... .......... .......... .......... .......... .......... 209 GAAATACTAT TCAAAACCTA ACCTAATGGT TGTAATTTAG TTTCTTTAAG AGTTGTAGAG 37403 .......... .......... .......... .......... .......... .......... 209 GCAGGCTTCT CATTTCTCAA ATGTTACACC ATTTATCTTG ATGAAAACAT TTATCGTTTG 37463 .......... .......... .......... .......... .......... .......... 209 ATCAGTTATT GTTACACACT CGAGAAATTA AGATCTCTTG GTCACTTACA AAATGAATAG 37523 .......... .......... .......... .......... .......... .......... 209 AAGAAAATGG TCTTTCTAGT TACTACATGA AGAGTTACTA TAAGTCAACA TAGCTAACAG 37583 .......... .......... .......... .......... .......... .......... 209 TTCTAAAAAA AAATTAAGAA GTTTGAGAAG ATTATAGTCA AAGGGAAAAT TGTTTAATTC 37643 .......... .......... .......... .......... .......... .......... 209 CCCAAATAGT AACACCTTAA TATAAAGTGG GGCGGAGGGA ATATAAATGA TCCACATAAA 37703 .......... .......... .......... .......... .......... .......... 209 ATGTACATGA CCATGCTGTT CCAGATCAAT CAATCAATGA ACCAAACTAC CCCTCAGTCT 37763 .......... .......... .......... .......... .......... .......... 209 CAAATTAGTT GGGGATAGTC ATTTCGCTCT TTTAAGGTCC ATTTACCTCT AAGAGTATTC 37823 .......... .......... .......... .......... .......... .......... 209 ATTATATGGT TATTTGGAGT ACTACTTTTT GGCTGTCTGT CTACATACAA TGACCTTTTT 37883 .......... .......... .......... .......... .......... .......... 209 CCTTTATCTG ATCATGAAGT TTTGTAAAAC TCACGCATGT GGAGTTGGTT TTCAAAATCC 37943 .......... .......... .......... .......... .......... .......... 209 TAACAAAGGT AAGGAATGCA GATTAAAAAA TTAGAATTTC AGCTTTAAAA ATAATGTACA 38003 .......... .......... .......... .......... .......... .......... 209 AAGAAAACTA AGAATTATAT CGTCAGTGTA TATAGAAATA AAAGAGTGAT CATTCAGATT 38063 .......... .......... .......... .......... .......... .......... 209 GTCAGTTCTG TACCTTAGCA ATTGTTGTCA CATCATGTTC CAGGATGATC TTTTTGATTT 38123 .......... .......... .......... .......... .......... .......... 209 TTTAGTTCCA TGTCAGGCAT AGTTGAATTT TCTTTCTTTC CTTTTTCCAC AGCAGAAGCG 38183 .......... .......... .......... .......... .......... .......... 209 AGATATGTAG ATCTGCACAG AAAACTATAT CCTTTGAAAG ACTAAACTAG TTTTCTGAGA 38243 .......... .......... .......... .......... .......... .......... 209 ACTGGATTAA GGTTCCAAGT AAAACTGTAT GCGCTGTATT CGCAATCTTT GGGATGATCA 38303 .......... .......... .......... .......... .......... .......... 209 GAATTCTAGC CTGACATGTT TGCAATGTTT CTCTTCTTTT TAGTTCTTGC CGACTTTGTA 38363 ||||||| |||||||||| .......... .......... .......... .......... ...TTCTTGC CGACTTTGTA 226 TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 38423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 286 TAGCAGATGT TAAGACTGAA CGAGTATTAC TTCATGACTT AAGCATCTTC TCTTTCTCCT 38483 |||||||||| |||||||||| ||| TAGCAGATGT TAAGACTGAA CGA....... .......... .......... .......... 309 TTTGAGATCA AATCCATTTA CAACTGTCTC AATAGCAACT ACTTGTCATT CACTTTTTTT 38543 .......... .......... .......... .......... .......... .......... 309 TTCTTTTTTC TTTTAACAGA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 38603 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 350 ATGCAAGGCC GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAGGT ATTTTTAATA 38663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATGCAAGGCC GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAG.. .......... 398 CATGACTGAG CAGTTCAATA GGGATTTCAA TGAATAAAAG AATCTTTATA GATTGAATGT 38723 .......... .......... .......... .......... .......... .......... 398 GATGGATCTT AAACATTTTC TGTTGATTCA GAAGGATCTA TACAATTGCT CTATCCTCTT 38783 .......... .......... .......... .......... .......... .......... 398 ATGCTACTTT TTCGTATTAT GGGTTCTCAA ATTTTAGTAT TTCCTACTCA GATCAGGGCG 38843 ||||||||| .......... .......... .......... .......... .......... .ATCAGGGCG 407 TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAGGCA GGTTCATTTC 38903 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAG... .......... 454 TTCATCATGC ACTTGAGTAG GTTGACAATG AATTCAATTA AAAGATTTAC ATGGATGAAA 38963 .......... .......... .......... .......... .......... .......... 454 TCAATGTAGA AGTTGGTTTC CAGGCCCTCT TTCTGATGAA AGCCATCGTA GTTCATTGAG 39023 .......... .......... .......... .......... .......... .......... 454 AATGGATAAT AATGTTATTG ATGAATGAAT CCCCCATATA TTTTTTGGTT GGTGTGTGCA 39083 .......... .......... .......... .......... .......... .......... 454 GTGGTGGATC TAGGATTTTG AGGTTATTGT GTGCTCTGAA AGTTGTGGAG TCAAAAATAT 39143 .......... .......... .......... .......... .......... .......... 454 AAAATGGATA ATAATGTTAT TGATGAATGA ATCCCACATA TATTTTTTGG TTGGTGTGTC 39203 .......... .......... .......... .......... .......... .......... 454 ATGTGTGTGT GGGGTAAATG TGTTTGCTGA AGATACTTGA AGACTCTCTC GCCACACTAA 39263 .......... .......... .......... .......... .......... .......... 454 ATAACGGAAA GATTAATCTA CTGAAGTTCC TCATAGTCAA GCAAAGTAAC TCTGTCACTA 39323 .......... .......... .......... .......... .......... .......... 454 GAAAAAAAAG GTTCAGTTTA CCCTTAAAGA TGAATGGGGG GGGGGGGCAG ACTCTATTTT 39383 .......... .......... .......... .......... .......... .......... 454 GCAACCATTT GAAAGACCAA ATATAATTCT CTATTATTCA TTCTATGATT GAAGCCTAGA 39443 .......... .......... .......... .......... .......... .......... 454 AGTCAAAACA TGTTGTCAAA AACTGGATAT TCAATCTTTG CCATAGTCCA TAGGTGAAGA 39503 .......... .......... .......... .......... .......... .......... 454 TTTACAAAAG GAGCAAGTTC TAAAGTTCCT TCAAACAATA TGAATCCCGG ACCAAACAGG 39563 .......... .......... .......... .......... .......... .......... 454 AGCGAAGAAG TGTAAAGAGT CTTTAAACTA CTGGACTGTT TTGCCTAGTG TGGTTTTTAT 39623 .......... .......... .......... .......... .......... .......... 454 GGTCAATTGG TCATATGCGA ACTTGAAAGA GGATTCCAAT TAAAACTACC TCTATCAGAA 39683 .......... .......... .......... .......... .......... .......... 454 AAAAAGAAGA TCCCATTAAA AGTAACAGAT GTTATCTGTG TTGGTGTAGT TTTGACTTTT 39743 .......... .......... .......... .......... .......... .......... 454 GGTTTAAGTC CTTTTCTGAT ATTTTCCACC CAATTCAGAT TATTCATATG ATCATCTTAT 39803 .......... .......... .......... .......... .......... .......... 454 CATGCAGGAG ATGTTTTCTA TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAGTT 39863 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAG ATGTTTTCTA TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAGTT 507 GTTTCAACTT TAGGAGGTTT TGGTTCTGAT GAACAAATGC TTAGGATCAA TGGTGAAGCT 39923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAACTT TAGGAGGTTT TGGTTCTGAT GAACAAATGC TTAGGATCAA TGGTGAAGCT 567 AATGTTGTGG CTGTCAATGC TGCTAAAGAA TATGGTCAGT AGCTTTCATT TTATTTATTT 39983 |||||||||| |||||||||| |||||||||| |||| AATGTTGTGG CTGTCAATGC TGCTAAAGAA TATG...... .......... .......... 601 GAAGAAATCT GTAAAGCTGA AGTGACCTTT AGTGATAAAC TTTTGAGTGG TTAGTTTTTG 40043 .......... .......... .......... .......... .......... .......... 601 CAGTGCCTAT CTTCTCTATC TTATTTTTAC TTTAACTTGC AATATATAAT GAATCAGATA 40103 .......... .......... .......... .......... .......... .......... 601 AGTCATGCTT CCCTGTGATG AAGCATGAGG CATGGTTGAC TCCATTATTT ACTTTAGCTC 40163 .......... .......... .......... .......... .......... .......... 601 AGAGCTAAAG ATTTTAATGA GCAGAAAATT CTGCTCGTCA CTTCTAATTT AATGACATTT 40223 .......... .......... .......... .......... .......... .......... 601 ACCAACTGAA GCAAAAGCTG AATCCGTCCC CAGATTGAAA TAAAATGCTT GAGTAAGTAT 40283 .......... .......... .......... .......... .......... .......... 601 AAATTGTAGG ATATGCATGA AGTAACTGCT ATTATAGATA TTTTGCATTT CTCTTGCACT 40343 .......... .......... .......... .......... .......... .......... 601 GGCTGGGTGC TGGTCTGTTT ATTAATAGAA CTTAGCTTAC TTATCAAACA ACTATTACTA 40403 .......... .......... .......... .......... .......... .......... 601 CCCCTTAATG TTAAACTAGT TGGGATTCGT TATATAGAAC TTCATGATCT ATTTTTCTTC 40463 .......... .......... .......... .......... .......... .......... 601 ACCTAGACCT GTTATCCAGT ATTCAATAAT TTGGGATTGT CTAAAACAGA GGTTCTCTAC 40523 .......... .......... .......... .......... .......... .......... 601 AATTTGCAAT TAACAGTATG GTACTGCTTT GCTGTGTTTA AGAACAACCC TTATGGCAGG 40583 .......... .......... .......... .......... .......... .......... 601 TTTAAACTAG TCATTTTGCA CACCATGTTA TCATTGTTCC CTTGTTTCTC CATAACTACT 40643 .......... .......... .......... .......... .......... .......... 601 CATGCCAAGT GTTACATTAT ATTTTTTGTT ATTTGCAGGG ACCCCTAAGT TCATATTGAT 40703 || |||||||||| |||||||||| .......... .......... .......... ........GG ACCCCTAAGT TCATATTGAT 623 TTCTGTGCAT GATTACAATC TACCATCATT C 40734 |||||||||| |||||||||| |||||||||| | TTCTGTGCAT GATTACAATC TACCATCATT C 654 hqPGS_C08HBa0320P23.1+_SGN-E277026+ (36684 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) ******************************************************************************** EST sequence 51 +strand 571 n (File: SGN-E276316+) 1 TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 61 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 121 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 181 TACAGTCATT CACAAGTCTC TCGCTCTCGT TCTTGCCGAC TTTGTATTAA AAGCAGTTAT 241 GCCGAAGCTG TCAGAGGGGA TCCTAACTCG GATGCAATTG ATGTTGTAGC AGATGTTAAG 301 ACTGAACGAA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT ATGCAAGGCC 361 GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAGAT CAGGGCGTCC CTCTAAATCA 421 GACTCATGGG TAGATCAAGT CACTTGGATA ACAGGAGATG TTTTCTATGC AAACTGGGAT 481 GAAGTACTTA TTGGGGCTAC AGCAATTGTT TCAACTCTAA GAGGTTTTGG TTCTGATGAA 541 CAAATGCTTA AGATCAATGG TGAAGCTAAT G Predicted gene structure (within gDNA segment 36084 to 40537): Exon 1 36684 36892 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 210 309 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 310 398 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 399 454 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39927 ( 117 n); cDNA 455 571 ( 117 n); score: 0.966 MATCH C08HBa0320P23.1+ SGN-E276316+ 0.993 571 1.000 C PGS_C08HBa0320P23.1+_SGN-E276316+ (36684 36892,38347 38446,38563 38651,38835 38890,39811 39927) Alignment (genomic DNA sequence = upper lines): TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 36743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 60 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 36803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 120 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 36863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 180 TACAGTCATT CACAAGTCTC TCGCTCTCGG TCAGTATTCC TTGATTTGGC TCAACTTCTA 36923 |||||||||| |||||||||| ||||||||| TACAGTCATT CACAAGTCTC TCGCTCTCG. .......... .......... .......... 209 ATGCTCTTTT ATTTGTGATT TGAGGTTTAT GAGTTTTGAA TTCTATTCCA TAGGTGGATT 36983 .......... .......... .......... .......... .......... .......... 209 TATTCGGGAT TAAAGTCCTG AGATTATAAT TCCAAGTTAG ATATCAAGTA TTAAGCCTAC 37043 .......... .......... .......... .......... .......... .......... 209 AATAAAATTT ATAATCATTT TTGGTTGATA GGATTAACTT ATACCATCAA CGAAATGCAG 37103 .......... .......... .......... .......... .......... .......... 209 TATAAATTTG GTTCGGGATT AATCCTTGTA TATCCCAAGT TATTGGATTC TAAATTAATA 37163 .......... .......... .......... .......... .......... .......... 209 ATTTAGGTAT ATTTAGTTGA TTTTTGATAT AAATTCAAGG TTTGGATCGG TTCACCGGAG 37223 .......... .......... .......... .......... .......... .......... 209 AGCTAGCTCC GCTCCCAGTA CTTTTTGGGC TGTAATTTGT CTAGGATGGT TGAAAAGAGC 37283 .......... .......... .......... .......... .......... .......... 209 TTGCTGATTG AATAAGAATA TGACAAACAA AAAATCACAC TGCCTCAGGG AAAGAGAAAG 37343 .......... .......... .......... .......... .......... .......... 209 GAAATACTAT TCAAAACCTA ACCTAATGGT TGTAATTTAG TTTCTTTAAG AGTTGTAGAG 37403 .......... .......... .......... .......... .......... .......... 209 GCAGGCTTCT CATTTCTCAA ATGTTACACC ATTTATCTTG ATGAAAACAT TTATCGTTTG 37463 .......... .......... .......... .......... .......... .......... 209 ATCAGTTATT GTTACACACT CGAGAAATTA AGATCTCTTG GTCACTTACA AAATGAATAG 37523 .......... .......... .......... .......... .......... .......... 209 AAGAAAATGG TCTTTCTAGT TACTACATGA AGAGTTACTA TAAGTCAACA TAGCTAACAG 37583 .......... .......... .......... .......... .......... .......... 209 TTCTAAAAAA AAATTAAGAA GTTTGAGAAG ATTATAGTCA AAGGGAAAAT TGTTTAATTC 37643 .......... .......... .......... .......... .......... .......... 209 CCCAAATAGT AACACCTTAA TATAAAGTGG GGCGGAGGGA ATATAAATGA TCCACATAAA 37703 .......... .......... .......... .......... .......... .......... 209 ATGTACATGA CCATGCTGTT CCAGATCAAT CAATCAATGA ACCAAACTAC CCCTCAGTCT 37763 .......... .......... .......... .......... .......... .......... 209 CAAATTAGTT GGGGATAGTC ATTTCGCTCT TTTAAGGTCC ATTTACCTCT AAGAGTATTC 37823 .......... .......... .......... .......... .......... .......... 209 ATTATATGGT TATTTGGAGT ACTACTTTTT GGCTGTCTGT CTACATACAA TGACCTTTTT 37883 .......... .......... .......... .......... .......... .......... 209 CCTTTATCTG ATCATGAAGT TTTGTAAAAC TCACGCATGT GGAGTTGGTT TTCAAAATCC 37943 .......... .......... .......... .......... .......... .......... 209 TAACAAAGGT AAGGAATGCA GATTAAAAAA TTAGAATTTC AGCTTTAAAA ATAATGTACA 38003 .......... .......... .......... .......... .......... .......... 209 AAGAAAACTA AGAATTATAT CGTCAGTGTA TATAGAAATA AAAGAGTGAT CATTCAGATT 38063 .......... .......... .......... .......... .......... .......... 209 GTCAGTTCTG TACCTTAGCA ATTGTTGTCA CATCATGTTC CAGGATGATC TTTTTGATTT 38123 .......... .......... .......... .......... .......... .......... 209 TTTAGTTCCA TGTCAGGCAT AGTTGAATTT TCTTTCTTTC CTTTTTCCAC AGCAGAAGCG 38183 .......... .......... .......... .......... .......... .......... 209 AGATATGTAG ATCTGCACAG AAAACTATAT CCTTTGAAAG ACTAAACTAG TTTTCTGAGA 38243 .......... .......... .......... .......... .......... .......... 209 ACTGGATTAA GGTTCCAAGT AAAACTGTAT GCGCTGTATT CGCAATCTTT GGGATGATCA 38303 .......... .......... .......... .......... .......... .......... 209 GAATTCTAGC CTGACATGTT TGCAATGTTT CTCTTCTTTT TAGTTCTTGC CGACTTTGTA 38363 ||||||| |||||||||| .......... .......... .......... .......... ...TTCTTGC CGACTTTGTA 226 TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 38423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 286 TAGCAGATGT TAAGACTGAA CGAGTATTAC TTCATGACTT AAGCATCTTC TCTTTCTCCT 38483 |||||||||| |||||||||| ||| TAGCAGATGT TAAGACTGAA CGA....... .......... .......... .......... 309 TTTGAGATCA AATCCATTTA CAACTGTCTC AATAGCAACT ACTTGTCATT CACTTTTTTT 38543 .......... .......... .......... .......... .......... .......... 309 TTCTTTTTTC TTTTAACAGA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 38603 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 350 ATGCAAGGCC GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAGGT ATTTTTAATA 38663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATGCAAGGCC GCAGTGTCAG AGGGTATAGA GGTCATAAGT CTGAGCAG.. .......... 398 CATGACTGAG CAGTTCAATA GGGATTTCAA TGAATAAAAG AATCTTTATA GATTGAATGT 38723 .......... .......... .......... .......... .......... .......... 398 GATGGATCTT AAACATTTTC TGTTGATTCA GAAGGATCTA TACAATTGCT CTATCCTCTT 38783 .......... .......... .......... .......... .......... .......... 398 ATGCTACTTT TTCGTATTAT GGGTTCTCAA ATTTTAGTAT TTCCTACTCA GATCAGGGCG 38843 ||||||||| .......... .......... .......... .......... .......... .ATCAGGGCG 407 TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAGGCA GGTTCATTTC 38903 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCCCTCTAAA TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAG... .......... 454 TTCATCATGC ACTTGAGTAG GTTGACAATG AATTCAATTA AAAGATTTAC ATGGATGAAA 38963 .......... .......... .......... .......... .......... .......... 454 TCAATGTAGA AGTTGGTTTC CAGGCCCTCT TTCTGATGAA AGCCATCGTA GTTCATTGAG 39023 .......... .......... .......... .......... .......... .......... 454 AATGGATAAT AATGTTATTG ATGAATGAAT CCCCCATATA TTTTTTGGTT GGTGTGTGCA 39083 .......... .......... .......... .......... .......... .......... 454 GTGGTGGATC TAGGATTTTG AGGTTATTGT GTGCTCTGAA AGTTGTGGAG TCAAAAATAT 39143 .......... .......... .......... .......... .......... .......... 454 AAAATGGATA ATAATGTTAT TGATGAATGA ATCCCACATA TATTTTTTGG TTGGTGTGTC 39203 .......... .......... .......... .......... .......... .......... 454 ATGTGTGTGT GGGGTAAATG TGTTTGCTGA AGATACTTGA AGACTCTCTC GCCACACTAA 39263 .......... .......... .......... .......... .......... .......... 454 ATAACGGAAA GATTAATCTA CTGAAGTTCC TCATAGTCAA GCAAAGTAAC TCTGTCACTA 39323 .......... .......... .......... .......... .......... .......... 454 GAAAAAAAAG GTTCAGTTTA CCCTTAAAGA TGAATGGGGG GGGGGGGCAG ACTCTATTTT 39383 .......... .......... .......... .......... .......... .......... 454 GCAACCATTT GAAAGACCAA ATATAATTCT CTATTATTCA TTCTATGATT GAAGCCTAGA 39443 .......... .......... .......... .......... .......... .......... 454 AGTCAAAACA TGTTGTCAAA AACTGGATAT TCAATCTTTG CCATAGTCCA TAGGTGAAGA 39503 .......... .......... .......... .......... .......... .......... 454 TTTACAAAAG GAGCAAGTTC TAAAGTTCCT TCAAACAATA TGAATCCCGG ACCAAACAGG 39563 .......... .......... .......... .......... .......... .......... 454 AGCGAAGAAG TGTAAAGAGT CTTTAAACTA CTGGACTGTT TTGCCTAGTG TGGTTTTTAT 39623 .......... .......... .......... .......... .......... .......... 454 GGTCAATTGG TCATATGCGA ACTTGAAAGA GGATTCCAAT TAAAACTACC TCTATCAGAA 39683 .......... .......... .......... .......... .......... .......... 454 AAAAAGAAGA TCCCATTAAA AGTAACAGAT GTTATCTGTG TTGGTGTAGT TTTGACTTTT 39743 .......... .......... .......... .......... .......... .......... 454 GGTTTAAGTC CTTTTCTGAT ATTTTCCACC CAATTCAGAT TATTCATATG ATCATCTTAT 39803 .......... .......... .......... .......... .......... .......... 454 CATGCAGGAG ATGTTTTCTA TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAGTT 39863 ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || .......GAG ATGTTTTCTA TGCAAACTGG GATGAAGTAC TTATTGGGGC TACAGCAATT 507 GTTTCAACTT TAGGAGGTTT TGGTTCTGAT GAACAAATGC TTAGGATCAA TGGTGAAGCT 39923 ||||||||| || ||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GTTTCAACTC TAAGAGGTTT TGGTTCTGAT GAACAAATGC TTAAGATCAA TGGTGAAGCT 567 AATG 39927 |||| AATG 571 hqPGS_C08HBa0320P23.1+_SGN-E276316+ (36684 36892,38347 38446,38563 38651,38835 38890,39811 39927) ******************************************************************************** EST sequence 27 +strand 357 n (File: SGN-E291225+) 1 TTGCCTTTGC TATTCATTTT CTTCCATTGG TTAGATAACT TCTCAATCTC ATCTCTGTGA 61 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 121 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 181 TACAGTCATT CACAAGTCTC TCGCTCTCGT TCTTGCCGAC TTTGTATTAA AAGCAGTTAT 241 GCCGAAGCTG TCAGAGGGGA TCCTAACTCG GATGCAATTG ATGTTGTAGC AGATGTTAAG 301 ACTGAACGAA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT ATGCAAG Predicted gene structure (within gDNA segment 36084 to 39220): Exon 1 36684 36892 ( 209 n); cDNA 1 209 ( 209 n); score: 0.995 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 210 309 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38610 ( 48 n); cDNA 310 357 ( 48 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E291225+ 0.997 357 1.000 C PGS_C08HBa0320P23.1+_SGN-E291225+ (36684 36892,38347 38446,38563 38610) Alignment (genomic DNA sequence = upper lines): TTGCCTTTGC TATTCATTTT CTTCCATTGA TTAGATAACT TCTCAATCTC ATCTCTGTGA 36743 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTGCCTTTGC TATTCATTTT CTTCCATTGG TTAGATAACT TCTCAATCTC ATCTCTGTGA 60 ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 36803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGGAAG AGAAAACTAT GGCGACTTTC TCAAACATCG GTGCCATTTG CAAAGTTACA 120 TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 36863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTCCTT CTCTTAGCAG CACTAGTAGT AGAGCTCTCT TTCCTACGAC TTTGCGCAGT 180 TACAGTCATT CACAAGTCTC TCGCTCTCGG TCAGTATTCC TTGATTTGGC TCAACTTCTA 36923 |||||||||| |||||||||| ||||||||| TACAGTCATT CACAAGTCTC TCGCTCTCG. .......... .......... .......... 209 ATGCTCTTTT ATTTGTGATT TGAGGTTTAT GAGTTTTGAA TTCTATTCCA TAGGTGGATT 36983 .......... .......... .......... .......... .......... .......... 209 TATTCGGGAT TAAAGTCCTG AGATTATAAT TCCAAGTTAG ATATCAAGTA TTAAGCCTAC 37043 .......... .......... .......... .......... .......... .......... 209 AATAAAATTT ATAATCATTT TTGGTTGATA GGATTAACTT ATACCATCAA CGAAATGCAG 37103 .......... .......... .......... .......... .......... .......... 209 TATAAATTTG GTTCGGGATT AATCCTTGTA TATCCCAAGT TATTGGATTC TAAATTAATA 37163 .......... .......... .......... .......... .......... .......... 209 ATTTAGGTAT ATTTAGTTGA TTTTTGATAT AAATTCAAGG TTTGGATCGG TTCACCGGAG 37223 .......... .......... .......... .......... .......... .......... 209 AGCTAGCTCC GCTCCCAGTA CTTTTTGGGC TGTAATTTGT CTAGGATGGT TGAAAAGAGC 37283 .......... .......... .......... .......... .......... .......... 209 TTGCTGATTG AATAAGAATA TGACAAACAA AAAATCACAC TGCCTCAGGG AAAGAGAAAG 37343 .......... .......... .......... .......... .......... .......... 209 GAAATACTAT TCAAAACCTA ACCTAATGGT TGTAATTTAG TTTCTTTAAG AGTTGTAGAG 37403 .......... .......... .......... .......... .......... .......... 209 GCAGGCTTCT CATTTCTCAA ATGTTACACC ATTTATCTTG ATGAAAACAT TTATCGTTTG 37463 .......... .......... .......... .......... .......... .......... 209 ATCAGTTATT GTTACACACT CGAGAAATTA AGATCTCTTG GTCACTTACA AAATGAATAG 37523 .......... .......... .......... .......... .......... .......... 209 AAGAAAATGG TCTTTCTAGT TACTACATGA AGAGTTACTA TAAGTCAACA TAGCTAACAG 37583 .......... .......... .......... .......... .......... .......... 209 TTCTAAAAAA AAATTAAGAA GTTTGAGAAG ATTATAGTCA AAGGGAAAAT TGTTTAATTC 37643 .......... .......... .......... .......... .......... .......... 209 CCCAAATAGT AACACCTTAA TATAAAGTGG GGCGGAGGGA ATATAAATGA TCCACATAAA 37703 .......... .......... .......... .......... .......... .......... 209 ATGTACATGA CCATGCTGTT CCAGATCAAT CAATCAATGA ACCAAACTAC CCCTCAGTCT 37763 .......... .......... .......... .......... .......... .......... 209 CAAATTAGTT GGGGATAGTC ATTTCGCTCT TTTAAGGTCC ATTTACCTCT AAGAGTATTC 37823 .......... .......... .......... .......... .......... .......... 209 ATTATATGGT TATTTGGAGT ACTACTTTTT GGCTGTCTGT CTACATACAA TGACCTTTTT 37883 .......... .......... .......... .......... .......... .......... 209 CCTTTATCTG ATCATGAAGT TTTGTAAAAC TCACGCATGT GGAGTTGGTT TTCAAAATCC 37943 .......... .......... .......... .......... .......... .......... 209 TAACAAAGGT AAGGAATGCA GATTAAAAAA TTAGAATTTC AGCTTTAAAA ATAATGTACA 38003 .......... .......... .......... .......... .......... .......... 209 AAGAAAACTA AGAATTATAT CGTCAGTGTA TATAGAAATA AAAGAGTGAT CATTCAGATT 38063 .......... .......... .......... .......... .......... .......... 209 GTCAGTTCTG TACCTTAGCA ATTGTTGTCA CATCATGTTC CAGGATGATC TTTTTGATTT 38123 .......... .......... .......... .......... .......... .......... 209 TTTAGTTCCA TGTCAGGCAT AGTTGAATTT TCTTTCTTTC CTTTTTCCAC AGCAGAAGCG 38183 .......... .......... .......... .......... .......... .......... 209 AGATATGTAG ATCTGCACAG AAAACTATAT CCTTTGAAAG ACTAAACTAG TTTTCTGAGA 38243 .......... .......... .......... .......... .......... .......... 209 ACTGGATTAA GGTTCCAAGT AAAACTGTAT GCGCTGTATT CGCAATCTTT GGGATGATCA 38303 .......... .......... .......... .......... .......... .......... 209 GAATTCTAGC CTGACATGTT TGCAATGTTT CTCTTCTTTT TAGTTCTTGC CGACTTTGTA 38363 ||||||| |||||||||| .......... .......... .......... .......... ...TTCTTGC CGACTTTGTA 226 TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 38423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG 286 TAGCAGATGT TAAGACTGAA CGAGTATTAC TTCATGACTT AAGCATCTTC TCTTTCTCCT 38483 |||||||||| |||||||||| ||| TAGCAGATGT TAAGACTGAA CGA....... .......... .......... .......... 309 TTTGAGATCA AATCCATTTA CAACTGTCTC AATAGCAACT ACTTGTCATT CACTTTTTTT 38543 .......... .......... .......... .......... .......... .......... 309 TTCTTTTTTC TTTTAACAGA TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 38603 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TTGTAGTTAT AGGAGGCAGC GGCTTTGTTG GCTCTGCAAT 350 ATGCAAG 38610 ||||||| ATGCAAG 357 hqPGS_C08HBa0320P23.1+_SGN-E291225+ (36684 36892,38347 38446,38563 38610) ******************************************************************************** EST sequence 19 +strand 596 n (File: SGN-E254372+) 1 TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT TTGCAAAGTT 61 ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC GACTTTGCGC 121 AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGTTCTTGCC GACTTTGTAT TAAAAGCAGT 181 TATGCCGAAG CTGTCAGAGG GGATCCTAAC TCGGATGCAA TTGATGTTGT AGCAGATGTT 241 AAGACTGAAC GAATTGTAGT TATAGGAGGC AGCGGCTTTG TTGGCTCTGC AATATGCAAG 301 GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA GATCAGGGCG TCCCTCTAAA 361 TCAGACTCAT GGGTAGATCA AGTCACTTGG ATAACAGGAG ATGTTTTCTA TGCAAACTGG 421 GATGAAGTAC TTATTGGGGC TACAGCAGTT GTTTCAACTT TAGGAGGTTT TGGTTCTGAT 481 GAACAAATGC TTAGGATCAA TGGTGAAGCT AATGTTGTGG CTGTCAATGC TGCTAAAGAA 541 TATGGGACCC CTAAGTTCAT ATTGATTTCT GTGCATGATT ACAATCTACC ATCATT Predicted gene structure (within gDNA segment 36141 to 41343): Exon 1 36741 36892 ( 152 n); cDNA 1 152 ( 152 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 153 252 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 253 341 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 342 397 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 398 544 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 40682 40733 ( 52 n); cDNA 545 596 ( 52 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E254372+ 1.000 596 1.000 C PGS_C08HBa0320P23.1+_SGN-E254372+ (36741 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40733) Alignment (genomic DNA sequence = upper lines): TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT TTGCAAAGTT 36800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT TTGCAAAGTT 60 ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC GACTTTGCGC 36860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC GACTTTGCGC 120 AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGGTCAGTAT TCCTTGATTT GGCTCAACTT 36920 |||||||||| |||||||||| |||||||||| || AGTTACAGTC ATTCACAAGT CTCTCGCTCT CG........ .......... .......... 152 CTAATGCTCT TTTATTTGTG ATTTGAGGTT TATGAGTTTT GAATTCTATT CCATAGGTGG 36980 .......... .......... .......... .......... .......... .......... 152 ATTTATTCGG GATTAAAGTC CTGAGATTAT AATTCCAAGT TAGATATCAA GTATTAAGCC 37040 .......... .......... .......... .......... .......... .......... 152 TACAATAAAA TTTATAATCA TTTTTGGTTG ATAGGATTAA CTTATACCAT CAACGAAATG 37100 .......... .......... .......... .......... .......... .......... 152 CAGTATAAAT TTGGTTCGGG ATTAATCCTT GTATATCCCA AGTTATTGGA TTCTAAATTA 37160 .......... .......... .......... .......... .......... .......... 152 ATAATTTAGG TATATTTAGT TGATTTTTGA TATAAATTCA AGGTTTGGAT CGGTTCACCG 37220 .......... .......... .......... .......... .......... .......... 152 GAGAGCTAGC TCCGCTCCCA GTACTTTTTG GGCTGTAATT TGTCTAGGAT GGTTGAAAAG 37280 .......... .......... .......... .......... .......... .......... 152 AGCTTGCTGA TTGAATAAGA ATATGACAAA CAAAAAATCA CACTGCCTCA GGGAAAGAGA 37340 .......... .......... .......... .......... .......... .......... 152 AAGGAAATAC TATTCAAAAC CTAACCTAAT GGTTGTAATT TAGTTTCTTT AAGAGTTGTA 37400 .......... .......... .......... .......... .......... .......... 152 GAGGCAGGCT TCTCATTTCT CAAATGTTAC ACCATTTATC TTGATGAAAA CATTTATCGT 37460 .......... .......... .......... .......... .......... .......... 152 TTGATCAGTT ATTGTTACAC ACTCGAGAAA TTAAGATCTC TTGGTCACTT ACAAAATGAA 37520 .......... .......... .......... .......... .......... .......... 152 TAGAAGAAAA TGGTCTTTCT AGTTACTACA TGAAGAGTTA CTATAAGTCA ACATAGCTAA 37580 .......... .......... .......... .......... .......... .......... 152 CAGTTCTAAA AAAAAATTAA GAAGTTTGAG AAGATTATAG TCAAAGGGAA AATTGTTTAA 37640 .......... .......... .......... .......... .......... .......... 152 TTCCCCAAAT AGTAACACCT TAATATAAAG TGGGGCGGAG GGAATATAAA TGATCCACAT 37700 .......... .......... .......... .......... .......... .......... 152 AAAATGTACA TGACCATGCT GTTCCAGATC AATCAATCAA TGAACCAAAC TACCCCTCAG 37760 .......... .......... .......... .......... .......... .......... 152 TCTCAAATTA GTTGGGGATA GTCATTTCGC TCTTTTAAGG TCCATTTACC TCTAAGAGTA 37820 .......... .......... .......... .......... .......... .......... 152 TTCATTATAT GGTTATTTGG AGTACTACTT TTTGGCTGTC TGTCTACATA CAATGACCTT 37880 .......... .......... .......... .......... .......... .......... 152 TTTCCTTTAT CTGATCATGA AGTTTTGTAA AACTCACGCA TGTGGAGTTG GTTTTCAAAA 37940 .......... .......... .......... .......... .......... .......... 152 TCCTAACAAA GGTAAGGAAT GCAGATTAAA AAATTAGAAT TTCAGCTTTA AAAATAATGT 38000 .......... .......... .......... .......... .......... .......... 152 ACAAAGAAAA CTAAGAATTA TATCGTCAGT GTATATAGAA ATAAAAGAGT GATCATTCAG 38060 .......... .......... .......... .......... .......... .......... 152 ATTGTCAGTT CTGTACCTTA GCAATTGTTG TCACATCATG TTCCAGGATG ATCTTTTTGA 38120 .......... .......... .......... .......... .......... .......... 152 TTTTTTAGTT CCATGTCAGG CATAGTTGAA TTTTCTTTCT TTCCTTTTTC CACAGCAGAA 38180 .......... .......... .......... .......... .......... .......... 152 GCGAGATATG TAGATCTGCA CAGAAAACTA TATCCTTTGA AAGACTAAAC TAGTTTTCTG 38240 .......... .......... .......... .......... .......... .......... 152 AGAACTGGAT TAAGGTTCCA AGTAAAACTG TATGCGCTGT ATTCGCAATC TTTGGGATGA 38300 .......... .......... .......... .......... .......... .......... 152 TCAGAATTCT AGCCTGACAT GTTTGCAATG TTTCTCTTCT TTTTAGTTCT TGCCGACTTT 38360 |||| |||||||||| .......... .......... .......... .......... ......TTCT TGCCGACTTT 166 GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT GCAATTGATG 38420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT GCAATTGATG 226 TTGTAGCAGA TGTTAAGACT GAACGAGTAT TACTTCATGA CTTAAGCATC TTCTCTTTCT 38480 |||||||||| |||||||||| |||||| TTGTAGCAGA TGTTAAGACT GAACGA.... .......... .......... .......... 252 CCTTTTGAGA TCAAATCCAT TTACAACTGT CTCAATAGCA ACTACTTGTC ATTCACTTTT 38540 .......... .......... .......... .......... .......... .......... 252 TTTTTCTTTT TTCTTTTAAC AGATTGTAGT TATAGGAGGC AGCGGCTTTG TTGGCTCTGC 38600 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ATTGTAGT TATAGGAGGC AGCGGCTTTG TTGGCTCTGC 290 AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA GGTATTTTTA 38660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA G......... 341 ATACATGACT GAGCAGTTCA ATAGGGATTT CAATGAATAA AAGAATCTTT ATAGATTGAA 38720 .......... .......... .......... .......... .......... .......... 341 TGTGATGGAT CTTAAACATT TTCTGTTGAT TCAGAAGGAT CTATACAATT GCTCTATCCT 38780 .......... .......... .......... .......... .......... .......... 341 CTTATGCTAC TTTTTCGTAT TATGGGTTCT CAAATTTTAG TATTTCCTAC TCAGATCAGG 38840 |||||| .......... .......... .......... .......... .......... ....ATCAGG 347 GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG GCAGGTTCAT 38900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG .......... 397 TTCTTCATCA TGCACTTGAG TAGGTTGACA ATGAATTCAA TTAAAAGATT TACATGGATG 38960 .......... .......... .......... .......... .......... .......... 397 AAATCAATGT AGAAGTTGGT TTCCAGGCCC TCTTTCTGAT GAAAGCCATC GTAGTTCATT 39020 .......... .......... .......... .......... .......... .......... 397 GAGAATGGAT AATAATGTTA TTGATGAATG AATCCCCCAT ATATTTTTTG GTTGGTGTGT 39080 .......... .......... .......... .......... .......... .......... 397 GCAGTGGTGG ATCTAGGATT TTGAGGTTAT TGTGTGCTCT GAAAGTTGTG GAGTCAAAAA 39140 .......... .......... .......... .......... .......... .......... 397 TATAAAATGG ATAATAATGT TATTGATGAA TGAATCCCAC ATATATTTTT TGGTTGGTGT 39200 .......... .......... .......... .......... .......... .......... 397 GTCATGTGTG TGTGGGGTAA ATGTGTTTGC TGAAGATACT TGAAGACTCT CTCGCCACAC 39260 .......... .......... .......... .......... .......... .......... 397 TAAATAACGG AAAGATTAAT CTACTGAAGT TCCTCATAGT CAAGCAAAGT AACTCTGTCA 39320 .......... .......... .......... .......... .......... .......... 397 CTAGAAAAAA AAGGTTCAGT TTACCCTTAA AGATGAATGG GGGGGGGGGG CAGACTCTAT 39380 .......... .......... .......... .......... .......... .......... 397 TTTGCAACCA TTTGAAAGAC CAAATATAAT TCTCTATTAT TCATTCTATG ATTGAAGCCT 39440 .......... .......... .......... .......... .......... .......... 397 AGAAGTCAAA ACATGTTGTC AAAAACTGGA TATTCAATCT TTGCCATAGT CCATAGGTGA 39500 .......... .......... .......... .......... .......... .......... 397 AGATTTACAA AAGGAGCAAG TTCTAAAGTT CCTTCAAACA ATATGAATCC CGGACCAAAC 39560 .......... .......... .......... .......... .......... .......... 397 AGGAGCGAAG AAGTGTAAAG AGTCTTTAAA CTACTGGACT GTTTTGCCTA GTGTGGTTTT 39620 .......... .......... .......... .......... .......... .......... 397 TATGGTCAAT TGGTCATATG CGAACTTGAA AGAGGATTCC AATTAAAACT ACCTCTATCA 39680 .......... .......... .......... .......... .......... .......... 397 GAAAAAAAGA AGATCCCATT AAAAGTAACA GATGTTATCT GTGTTGGTGT AGTTTTGACT 39740 .......... .......... .......... .......... .......... .......... 397 TTTGGTTTAA GTCCTTTTCT GATATTTTCC ACCCAATTCA GATTATTCAT ATGATCATCT 39800 .......... .......... .......... .......... .......... .......... 397 TATCATGCAG GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG GGCTACAGCA 39860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG GGCTACAGCA 447 GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT CAATGGTGAA 39920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT CAATGGTGAA 507 GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATGGTC AGTAGCTTTC ATTTTATTTA 39980 |||||||||| |||||||||| |||||||||| ||||||| GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATG... .......... .......... 544 TTTGAAGAAA TCTGTAAAGC TGAAGTGACC TTTAGTGATA AACTTTTGAG TGGTTAGTTT 40040 .......... .......... .......... .......... .......... .......... 544 TTGCAGTGCC TATCTTCTCT ATCTTATTTT TACTTTAACT TGCAATATAT AATGAATCAG 40100 .......... .......... .......... .......... .......... .......... 544 ATAAGTCATG CTTCCCTGTG ATGAAGCATG AGGCATGGTT GACTCCATTA TTTACTTTAG 40160 .......... .......... .......... .......... .......... .......... 544 CTCAGAGCTA AAGATTTTAA TGAGCAGAAA ATTCTGCTCG TCACTTCTAA TTTAATGACA 40220 .......... .......... .......... .......... .......... .......... 544 TTTACCAACT GAAGCAAAAG CTGAATCCGT CCCCAGATTG AAATAAAATG CTTGAGTAAG 40280 .......... .......... .......... .......... .......... .......... 544 TATAAATTGT AGGATATGCA TGAAGTAACT GCTATTATAG ATATTTTGCA TTTCTCTTGC 40340 .......... .......... .......... .......... .......... .......... 544 ACTGGCTGGG TGCTGGTCTG TTTATTAATA GAACTTAGCT TACTTATCAA ACAACTATTA 40400 .......... .......... .......... .......... .......... .......... 544 CTACCCCTTA ATGTTAAACT AGTTGGGATT CGTTATATAG AACTTCATGA TCTATTTTTC 40460 .......... .......... .......... .......... .......... .......... 544 TTCACCTAGA CCTGTTATCC AGTATTCAAT AATTTGGGAT TGTCTAAAAC AGAGGTTCTC 40520 .......... .......... .......... .......... .......... .......... 544 TACAATTTGC AATTAACAGT ATGGTACTGC TTTGCTGTGT TTAAGAACAA CCCTTATGGC 40580 .......... .......... .......... .......... .......... .......... 544 AGGTTTAAAC TAGTCATTTT GCACACCATG TTATCATTGT TCCCTTGTTT CTCCATAACT 40640 .......... .......... .......... .......... .......... .......... 544 ACTCATGCCA AGTGTTACAT TATATTTTTT GTTATTTGCA GGGACCCCTA AGTTCATATT 40700 ||||||||| |||||||||| .......... .......... .......... .......... .GGACCCCTA AGTTCATATT 563 GATTTCTGTG CATGATTACA ATCTACCATC ATT 40733 |||||||||| |||||||||| |||||||||| ||| GATTTCTGTG CATGATTACA ATCTACCATC ATT 596 hqPGS_C08HBa0320P23.1+_SGN-E254372+ (36741 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40733) ******************************************************************************** EST sequence 57 +strand 634 n (File: SGN-E329834+) 1 GAAGAGAAAA CTATGGCGAC TTTCTCAAAC ATCGGTGCCA TTTGCAAAGT TACATCAGCT 61 CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 121 CATTCACAAG TCTCTCGCTC TCGTTCTTGC CGACTTTGTA TTAAAAGCAG TTATGCCGAA 181 GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG TAGCAGATGT TAAGACTGAA 241 CGAATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA GGCCGCAGTG 301 TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AGATCAGGGC GTCCCTCTAA ATCAGACTCA 361 TGGGTAGATC AAGTCACTTG GATAACAGGA GATGTTTTCT ATGCAAACTG GGATGAAGTA 421 CTTATTGGGG CTACAGCAGT TGTTTCAACT TTAGGAGGTT TTGGTTCTGA TGAACAAATG 481 CTTAGGATCA ATGGTGAAGC TAATGTTGTG GCTGTCAATG CTGCTAAAGA ATATGGGACC 541 CCTAAGTTCA TATTGATTTC TGTGCATGAT TACAATCTAC CATCATTCCT CCAATCAAGT 601 TACTTCATAG GGAAAAGAAA AGCAGAATCA GAAG Predicted gene structure (within gDNA segment 36150 to 41390): Exon 1 36750 36892 ( 143 n); cDNA 1 143 ( 143 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 144 243 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 244 332 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 333 388 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 389 535 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 40682 40780 ( 99 n); cDNA 536 634 ( 99 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E329834+ 1.000 634 1.000 C PGS_C08HBa0320P23.1+_SGN-E329834+ (36750 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40780) Alignment (genomic DNA sequence = upper lines): GAAGAGAAAA CTATGGCGAC TTTCTCAAAC ATCGGTGCCA TTTGCAAAGT TACATCAGCT 36809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAAAA CTATGGCGAC TTTCTCAAAC ATCGGTGCCA TTTGCAAAGT TACATCAGCT 60 CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 36869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 120 CATTCACAAG TCTCTCGCTC TCGGTCAGTA TTCCTTGATT TGGCTCAACT TCTAATGCTC 36929 |||||||||| |||||||||| ||| CATTCACAAG TCTCTCGCTC TCG....... .......... .......... .......... 143 TTTTATTTGT GATTTGAGGT TTATGAGTTT TGAATTCTAT TCCATAGGTG GATTTATTCG 36989 .......... .......... .......... .......... .......... .......... 143 GGATTAAAGT CCTGAGATTA TAATTCCAAG TTAGATATCA AGTATTAAGC CTACAATAAA 37049 .......... .......... .......... .......... .......... .......... 143 ATTTATAATC ATTTTTGGTT GATAGGATTA ACTTATACCA TCAACGAAAT GCAGTATAAA 37109 .......... .......... .......... .......... .......... .......... 143 TTTGGTTCGG GATTAATCCT TGTATATCCC AAGTTATTGG ATTCTAAATT AATAATTTAG 37169 .......... .......... .......... .......... .......... .......... 143 GTATATTTAG TTGATTTTTG ATATAAATTC AAGGTTTGGA TCGGTTCACC GGAGAGCTAG 37229 .......... .......... .......... .......... .......... .......... 143 CTCCGCTCCC AGTACTTTTT GGGCTGTAAT TTGTCTAGGA TGGTTGAAAA GAGCTTGCTG 37289 .......... .......... .......... .......... .......... .......... 143 ATTGAATAAG AATATGACAA ACAAAAAATC ACACTGCCTC AGGGAAAGAG AAAGGAAATA 37349 .......... .......... .......... .......... .......... .......... 143 CTATTCAAAA CCTAACCTAA TGGTTGTAAT TTAGTTTCTT TAAGAGTTGT AGAGGCAGGC 37409 .......... .......... .......... .......... .......... .......... 143 TTCTCATTTC TCAAATGTTA CACCATTTAT CTTGATGAAA ACATTTATCG TTTGATCAGT 37469 .......... .......... .......... .......... .......... .......... 143 TATTGTTACA CACTCGAGAA ATTAAGATCT CTTGGTCACT TACAAAATGA ATAGAAGAAA 37529 .......... .......... .......... .......... .......... .......... 143 ATGGTCTTTC TAGTTACTAC ATGAAGAGTT ACTATAAGTC AACATAGCTA ACAGTTCTAA 37589 .......... .......... .......... .......... .......... .......... 143 AAAAAAATTA AGAAGTTTGA GAAGATTATA GTCAAAGGGA AAATTGTTTA ATTCCCCAAA 37649 .......... .......... .......... .......... .......... .......... 143 TAGTAACACC TTAATATAAA GTGGGGCGGA GGGAATATAA ATGATCCACA TAAAATGTAC 37709 .......... .......... .......... .......... .......... .......... 143 ATGACCATGC TGTTCCAGAT CAATCAATCA ATGAACCAAA CTACCCCTCA GTCTCAAATT 37769 .......... .......... .......... .......... .......... .......... 143 AGTTGGGGAT AGTCATTTCG CTCTTTTAAG GTCCATTTAC CTCTAAGAGT ATTCATTATA 37829 .......... .......... .......... .......... .......... .......... 143 TGGTTATTTG GAGTACTACT TTTTGGCTGT CTGTCTACAT ACAATGACCT TTTTCCTTTA 37889 .......... .......... .......... .......... .......... .......... 143 TCTGATCATG AAGTTTTGTA AAACTCACGC ATGTGGAGTT GGTTTTCAAA ATCCTAACAA 37949 .......... .......... .......... .......... .......... .......... 143 AGGTAAGGAA TGCAGATTAA AAAATTAGAA TTTCAGCTTT AAAAATAATG TACAAAGAAA 38009 .......... .......... .......... .......... .......... .......... 143 ACTAAGAATT ATATCGTCAG TGTATATAGA AATAAAAGAG TGATCATTCA GATTGTCAGT 38069 .......... .......... .......... .......... .......... .......... 143 TCTGTACCTT AGCAATTGTT GTCACATCAT GTTCCAGGAT GATCTTTTTG ATTTTTTAGT 38129 .......... .......... .......... .......... .......... .......... 143 TCCATGTCAG GCATAGTTGA ATTTTCTTTC TTTCCTTTTT CCACAGCAGA AGCGAGATAT 38189 .......... .......... .......... .......... .......... .......... 143 GTAGATCTGC ACAGAAAACT ATATCCTTTG AAAGACTAAA CTAGTTTTCT GAGAACTGGA 38249 .......... .......... .......... .......... .......... .......... 143 TTAAGGTTCC AAGTAAAACT GTATGCGCTG TATTCGCAAT CTTTGGGATG ATCAGAATTC 38309 .......... .......... .......... .......... .......... .......... 143 TAGCCTGACA TGTTTGCAAT GTTTCTCTTC TTTTTAGTTC TTGCCGACTT TGTATTAAAA 38369 ||| |||||||||| |||||||||| .......... .......... .......... .......TTC TTGCCGACTT TGTATTAAAA 166 GCAGTTATGC CGAAGCTGTC AGAGGGGATC CTAACTCGGA TGCAATTGAT GTTGTAGCAG 38429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTATGC CGAAGCTGTC AGAGGGGATC CTAACTCGGA TGCAATTGAT GTTGTAGCAG 226 ATGTTAAGAC TGAACGAGTA TTACTTCATG ACTTAAGCAT CTTCTCTTTC TCCTTTTGAG 38489 |||||||||| ||||||| ATGTTAAGAC TGAACGA... .......... .......... .......... .......... 243 ATCAAATCCA TTTACAACTG TCTCAATAGC AACTACTTGT CATTCACTTT TTTTTTCTTT 38549 .......... .......... .......... .......... .......... .......... 243 TTTCTTTTAA CAGATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA 38609 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA 290 GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AGGTATTTTT AATACATGAC 38669 |||||||||| |||||||||| |||||||||| |||||||||| || GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AG........ .......... 332 TGAGCAGTTC AATAGGGATT TCAATGAATA AAAGAATCTT TATAGATTGA ATGTGATGGA 38729 .......... .......... .......... .......... .......... .......... 332 TCTTAAACAT TTTCTGTTGA TTCAGAAGGA TCTATACAAT TGCTCTATCC TCTTATGCTA 38789 .......... .......... .......... .......... .......... .......... 332 CTTTTTCGTA TTATGGGTTC TCAAATTTTA GTATTTCCTA CTCAGATCAG GGCGTCCCTC 38849 ||||| |||||||||| .......... .......... .......... .......... .....ATCAG GGCGTCCCTC 347 TAAATCAGAC TCATGGGTAG ATCAAGTCAC TTGGATAACA GGCAGGTTCA TTTCTTCATC 38909 |||||||||| |||||||||| |||||||||| |||||||||| | TAAATCAGAC TCATGGGTAG ATCAAGTCAC TTGGATAACA G......... .......... 388 ATGCACTTGA GTAGGTTGAC AATGAATTCA ATTAAAAGAT TTACATGGAT GAAATCAATG 38969 .......... .......... .......... .......... .......... .......... 388 TAGAAGTTGG TTTCCAGGCC CTCTTTCTGA TGAAAGCCAT CGTAGTTCAT TGAGAATGGA 39029 .......... .......... .......... .......... .......... .......... 388 TAATAATGTT ATTGATGAAT GAATCCCCCA TATATTTTTT GGTTGGTGTG TGCAGTGGTG 39089 .......... .......... .......... .......... .......... .......... 388 GATCTAGGAT TTTGAGGTTA TTGTGTGCTC TGAAAGTTGT GGAGTCAAAA ATATAAAATG 39149 .......... .......... .......... .......... .......... .......... 388 GATAATAATG TTATTGATGA ATGAATCCCA CATATATTTT TTGGTTGGTG TGTCATGTGT 39209 .......... .......... .......... .......... .......... .......... 388 GTGTGGGGTA AATGTGTTTG CTGAAGATAC TTGAAGACTC TCTCGCCACA CTAAATAACG 39269 .......... .......... .......... .......... .......... .......... 388 GAAAGATTAA TCTACTGAAG TTCCTCATAG TCAAGCAAAG TAACTCTGTC ACTAGAAAAA 39329 .......... .......... .......... .......... .......... .......... 388 AAAGGTTCAG TTTACCCTTA AAGATGAATG GGGGGGGGGG GCAGACTCTA TTTTGCAACC 39389 .......... .......... .......... .......... .......... .......... 388 ATTTGAAAGA CCAAATATAA TTCTCTATTA TTCATTCTAT GATTGAAGCC TAGAAGTCAA 39449 .......... .......... .......... .......... .......... .......... 388 AACATGTTGT CAAAAACTGG ATATTCAATC TTTGCCATAG TCCATAGGTG AAGATTTACA 39509 .......... .......... .......... .......... .......... .......... 388 AAAGGAGCAA GTTCTAAAGT TCCTTCAAAC AATATGAATC CCGGACCAAA CAGGAGCGAA 39569 .......... .......... .......... .......... .......... .......... 388 GAAGTGTAAA GAGTCTTTAA ACTACTGGAC TGTTTTGCCT AGTGTGGTTT TTATGGTCAA 39629 .......... .......... .......... .......... .......... .......... 388 TTGGTCATAT GCGAACTTGA AAGAGGATTC CAATTAAAAC TACCTCTATC AGAAAAAAAG 39689 .......... .......... .......... .......... .......... .......... 388 AAGATCCCAT TAAAAGTAAC AGATGTTATC TGTGTTGGTG TAGTTTTGAC TTTTGGTTTA 39749 .......... .......... .......... .......... .......... .......... 388 AGTCCTTTTC TGATATTTTC CACCCAATTC AGATTATTCA TATGATCATC TTATCATGCA 39809 .......... .......... .......... .......... .......... .......... 388 GGAGATGTTT TCTATGCAAA CTGGGATGAA GTACTTATTG GGGCTACAGC AGTTGTTTCA 39869 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAGATGTTT TCTATGCAAA CTGGGATGAA GTACTTATTG GGGCTACAGC AGTTGTTTCA 447 ACTTTAGGAG GTTTTGGTTC TGATGAACAA ATGCTTAGGA TCAATGGTGA AGCTAATGTT 39929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTAGGAG GTTTTGGTTC TGATGAACAA ATGCTTAGGA TCAATGGTGA AGCTAATGTT 507 GTGGCTGTCA ATGCTGCTAA AGAATATGGT CAGTAGCTTT CATTTTATTT ATTTGAAGAA 39989 |||||||||| |||||||||| |||||||| GTGGCTGTCA ATGCTGCTAA AGAATATG.. .......... .......... .......... 535 ATCTGTAAAG CTGAAGTGAC CTTTAGTGAT AAACTTTTGA GTGGTTAGTT TTTGCAGTGC 40049 .......... .......... .......... .......... .......... .......... 535 CTATCTTCTC TATCTTATTT TTACTTTAAC TTGCAATATA TAATGAATCA GATAAGTCAT 40109 .......... .......... .......... .......... .......... .......... 535 GCTTCCCTGT GATGAAGCAT GAGGCATGGT TGACTCCATT ATTTACTTTA GCTCAGAGCT 40169 .......... .......... .......... .......... .......... .......... 535 AAAGATTTTA ATGAGCAGAA AATTCTGCTC GTCACTTCTA ATTTAATGAC ATTTACCAAC 40229 .......... .......... .......... .......... .......... .......... 535 TGAAGCAAAA GCTGAATCCG TCCCCAGATT GAAATAAAAT GCTTGAGTAA GTATAAATTG 40289 .......... .......... .......... .......... .......... .......... 535 TAGGATATGC ATGAAGTAAC TGCTATTATA GATATTTTGC ATTTCTCTTG CACTGGCTGG 40349 .......... .......... .......... .......... .......... .......... 535 GTGCTGGTCT GTTTATTAAT AGAACTTAGC TTACTTATCA AACAACTATT ACTACCCCTT 40409 .......... .......... .......... .......... .......... .......... 535 AATGTTAAAC TAGTTGGGAT TCGTTATATA GAACTTCATG ATCTATTTTT CTTCACCTAG 40469 .......... .......... .......... .......... .......... .......... 535 ACCTGTTATC CAGTATTCAA TAATTTGGGA TTGTCTAAAA CAGAGGTTCT CTACAATTTG 40529 .......... .......... .......... .......... .......... .......... 535 CAATTAACAG TATGGTACTG CTTTGCTGTG TTTAAGAACA ACCCTTATGG CAGGTTTAAA 40589 .......... .......... .......... .......... .......... .......... 535 CTAGTCATTT TGCACACCAT GTTATCATTG TTCCCTTGTT TCTCCATAAC TACTCATGCC 40649 .......... .......... .......... .......... .......... .......... 535 AAGTGTTACA TTATATTTTT TGTTATTTGC AGGGACCCCT AAGTTCATAT TGATTTCTGT 40709 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGACCCCT AAGTTCATAT TGATTTCTGT 563 GCATGATTAC AATCTACCAT CATTCCTCCA ATCAAGTTAC TTCATAGGGA AAAGAAAAGC 40769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGATTAC AATCTACCAT CATTCCTCCA ATCAAGTTAC TTCATAGGGA AAAGAAAAGC 623 AGAATCAGAA G 40780 |||||||||| | AGAATCAGAA G 634 hqPGS_C08HBa0320P23.1+_SGN-E329834+ (36750 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40780) ******************************************************************************** EST sequence 3 +strand 437 n (File: SGN-E330659+) 1 GAAGAGAAAA CTATGGCGAC TTTCTTTAAC ATCGGTGCCG GGGGCAAAGT TACATGGGCT 61 CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 121 CATTCACAAG TCTCTCGCTC TCGTTCTTGC CGACTTTGTA TTAAAAGCAG TTATGCCGAA 181 GCTGTCAGAG GGGATCCTAA CTCGGATGCA ATTGATGTTG TAGCAGATGT TAAGACTGAA 241 CGAATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA GGCCGCAGTG 301 TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AGATCAGGGC GTCCCTCTAA ATCAGACTCA 361 TGGGTAGATC AAGTCACTTG GATAACAGGA GATGTTTTCT ATGCAAACTG GGATGAAGTA 421 CTTATTGGGG CTACAGC Predicted gene structure (within gDNA segment 35637 to 40469): Exon 1 36750 36892 ( 143 n); cDNA 1 143 ( 143 n); score: 0.944 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 144 243 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 244 332 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 333 388 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39859 ( 49 n); cDNA 389 437 ( 49 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E330659+ 0.979 437 1.000 C PGS_C08HBa0320P23.1+_SGN-E330659+ (36750 36892,38347 38446,38563 38651,38835 38890,39811 39859) Alignment (genomic DNA sequence = upper lines): GAAGAGAAAA CTATGGCGAC TTTCTCAAAC ATCGGTGCCA TTTGCAAAGT TACATCAGCT 36809 |||||||||| |||||||||| ||||| ||| ||||||||| ||||||| ||||| ||| GAAGAGAAAA CTATGGCGAC TTTCTTTAAC ATCGGTGCCG GGGGCAAAGT TACATGGGCT 60 CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 36869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTCTTA GCAGCACTAG TAGTAGAGCT CTCTTTCCTA CGACTTTGCG CAGTTACAGT 120 CATTCACAAG TCTCTCGCTC TCGGTCAGTA TTCCTTGATT TGGCTCAACT TCTAATGCTC 36929 |||||||||| |||||||||| ||| CATTCACAAG TCTCTCGCTC TCG....... .......... .......... .......... 143 TTTTATTTGT GATTTGAGGT TTATGAGTTT TGAATTCTAT TCCATAGGTG GATTTATTCG 36989 .......... .......... .......... .......... .......... .......... 143 GGATTAAAGT CCTGAGATTA TAATTCCAAG TTAGATATCA AGTATTAAGC CTACAATAAA 37049 .......... .......... .......... .......... .......... .......... 143 ATTTATAATC ATTTTTGGTT GATAGGATTA ACTTATACCA TCAACGAAAT GCAGTATAAA 37109 .......... .......... .......... .......... .......... .......... 143 TTTGGTTCGG GATTAATCCT TGTATATCCC AAGTTATTGG ATTCTAAATT AATAATTTAG 37169 .......... .......... .......... .......... .......... .......... 143 GTATATTTAG TTGATTTTTG ATATAAATTC AAGGTTTGGA TCGGTTCACC GGAGAGCTAG 37229 .......... .......... .......... .......... .......... .......... 143 CTCCGCTCCC AGTACTTTTT GGGCTGTAAT TTGTCTAGGA TGGTTGAAAA GAGCTTGCTG 37289 .......... .......... .......... .......... .......... .......... 143 ATTGAATAAG AATATGACAA ACAAAAAATC ACACTGCCTC AGGGAAAGAG AAAGGAAATA 37349 .......... .......... .......... .......... .......... .......... 143 CTATTCAAAA CCTAACCTAA TGGTTGTAAT TTAGTTTCTT TAAGAGTTGT AGAGGCAGGC 37409 .......... .......... .......... .......... .......... .......... 143 TTCTCATTTC TCAAATGTTA CACCATTTAT CTTGATGAAA ACATTTATCG TTTGATCAGT 37469 .......... .......... .......... .......... .......... .......... 143 TATTGTTACA CACTCGAGAA ATTAAGATCT CTTGGTCACT TACAAAATGA ATAGAAGAAA 37529 .......... .......... .......... .......... .......... .......... 143 ATGGTCTTTC TAGTTACTAC ATGAAGAGTT ACTATAAGTC AACATAGCTA ACAGTTCTAA 37589 .......... .......... .......... .......... .......... .......... 143 AAAAAAATTA AGAAGTTTGA GAAGATTATA GTCAAAGGGA AAATTGTTTA ATTCCCCAAA 37649 .......... .......... .......... .......... .......... .......... 143 TAGTAACACC TTAATATAAA GTGGGGCGGA GGGAATATAA ATGATCCACA TAAAATGTAC 37709 .......... .......... .......... .......... .......... .......... 143 ATGACCATGC TGTTCCAGAT CAATCAATCA ATGAACCAAA CTACCCCTCA GTCTCAAATT 37769 .......... .......... .......... .......... .......... .......... 143 AGTTGGGGAT AGTCATTTCG CTCTTTTAAG GTCCATTTAC CTCTAAGAGT ATTCATTATA 37829 .......... .......... .......... .......... .......... .......... 143 TGGTTATTTG GAGTACTACT TTTTGGCTGT CTGTCTACAT ACAATGACCT TTTTCCTTTA 37889 .......... .......... .......... .......... .......... .......... 143 TCTGATCATG AAGTTTTGTA AAACTCACGC ATGTGGAGTT GGTTTTCAAA ATCCTAACAA 37949 .......... .......... .......... .......... .......... .......... 143 AGGTAAGGAA TGCAGATTAA AAAATTAGAA TTTCAGCTTT AAAAATAATG TACAAAGAAA 38009 .......... .......... .......... .......... .......... .......... 143 ACTAAGAATT ATATCGTCAG TGTATATAGA AATAAAAGAG TGATCATTCA GATTGTCAGT 38069 .......... .......... .......... .......... .......... .......... 143 TCTGTACCTT AGCAATTGTT GTCACATCAT GTTCCAGGAT GATCTTTTTG ATTTTTTAGT 38129 .......... .......... .......... .......... .......... .......... 143 TCCATGTCAG GCATAGTTGA ATTTTCTTTC TTTCCTTTTT CCACAGCAGA AGCGAGATAT 38189 .......... .......... .......... .......... .......... .......... 143 GTAGATCTGC ACAGAAAACT ATATCCTTTG AAAGACTAAA CTAGTTTTCT GAGAACTGGA 38249 .......... .......... .......... .......... .......... .......... 143 TTAAGGTTCC AAGTAAAACT GTATGCGCTG TATTCGCAAT CTTTGGGATG ATCAGAATTC 38309 .......... .......... .......... .......... .......... .......... 143 TAGCCTGACA TGTTTGCAAT GTTTCTCTTC TTTTTAGTTC TTGCCGACTT TGTATTAAAA 38369 ||| |||||||||| |||||||||| .......... .......... .......... .......TTC TTGCCGACTT TGTATTAAAA 166 GCAGTTATGC CGAAGCTGTC AGAGGGGATC CTAACTCGGA TGCAATTGAT GTTGTAGCAG 38429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTATGC CGAAGCTGTC AGAGGGGATC CTAACTCGGA TGCAATTGAT GTTGTAGCAG 226 ATGTTAAGAC TGAACGAGTA TTACTTCATG ACTTAAGCAT CTTCTCTTTC TCCTTTTGAG 38489 |||||||||| ||||||| ATGTTAAGAC TGAACGA... .......... .......... .......... .......... 243 ATCAAATCCA TTTACAACTG TCTCAATAGC AACTACTTGT CATTCACTTT TTTTTTCTTT 38549 .......... .......... .......... .......... .......... .......... 243 TTTCTTTTAA CAGATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA 38609 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATTGTAG TTATAGGAGG CAGCGGCTTT GTTGGCTCTG CAATATGCAA 290 GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AGGTATTTTT AATACATGAC 38669 |||||||||| |||||||||| |||||||||| |||||||||| || GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC AG........ .......... 332 TGAGCAGTTC AATAGGGATT TCAATGAATA AAAGAATCTT TATAGATTGA ATGTGATGGA 38729 .......... .......... .......... .......... .......... .......... 332 TCTTAAACAT TTTCTGTTGA TTCAGAAGGA TCTATACAAT TGCTCTATCC TCTTATGCTA 38789 .......... .......... .......... .......... .......... .......... 332 CTTTTTCGTA TTATGGGTTC TCAAATTTTA GTATTTCCTA CTCAGATCAG GGCGTCCCTC 38849 ||||| |||||||||| .......... .......... .......... .......... .....ATCAG GGCGTCCCTC 347 TAAATCAGAC TCATGGGTAG ATCAAGTCAC TTGGATAACA GGCAGGTTCA TTTCTTCATC 38909 |||||||||| |||||||||| |||||||||| |||||||||| | TAAATCAGAC TCATGGGTAG ATCAAGTCAC TTGGATAACA G......... .......... 388 ATGCACTTGA GTAGGTTGAC AATGAATTCA ATTAAAAGAT TTACATGGAT GAAATCAATG 38969 .......... .......... .......... .......... .......... .......... 388 TAGAAGTTGG TTTCCAGGCC CTCTTTCTGA TGAAAGCCAT CGTAGTTCAT TGAGAATGGA 39029 .......... .......... .......... .......... .......... .......... 388 TAATAATGTT ATTGATGAAT GAATCCCCCA TATATTTTTT GGTTGGTGTG TGCAGTGGTG 39089 .......... .......... .......... .......... .......... .......... 388 GATCTAGGAT TTTGAGGTTA TTGTGTGCTC TGAAAGTTGT GGAGTCAAAA ATATAAAATG 39149 .......... .......... .......... .......... .......... .......... 388 GATAATAATG TTATTGATGA ATGAATCCCA CATATATTTT TTGGTTGGTG TGTCATGTGT 39209 .......... .......... .......... .......... .......... .......... 388 GTGTGGGGTA AATGTGTTTG CTGAAGATAC TTGAAGACTC TCTCGCCACA CTAAATAACG 39269 .......... .......... .......... .......... .......... .......... 388 GAAAGATTAA TCTACTGAAG TTCCTCATAG TCAAGCAAAG TAACTCTGTC ACTAGAAAAA 39329 .......... .......... .......... .......... .......... .......... 388 AAAGGTTCAG TTTACCCTTA AAGATGAATG GGGGGGGGGG GCAGACTCTA TTTTGCAACC 39389 .......... .......... .......... .......... .......... .......... 388 ATTTGAAAGA CCAAATATAA TTCTCTATTA TTCATTCTAT GATTGAAGCC TAGAAGTCAA 39449 .......... .......... .......... .......... .......... .......... 388 AACATGTTGT CAAAAACTGG ATATTCAATC TTTGCCATAG TCCATAGGTG AAGATTTACA 39509 .......... .......... .......... .......... .......... .......... 388 AAAGGAGCAA GTTCTAAAGT TCCTTCAAAC AATATGAATC CCGGACCAAA CAGGAGCGAA 39569 .......... .......... .......... .......... .......... .......... 388 GAAGTGTAAA GAGTCTTTAA ACTACTGGAC TGTTTTGCCT AGTGTGGTTT TTATGGTCAA 39629 .......... .......... .......... .......... .......... .......... 388 TTGGTCATAT GCGAACTTGA AAGAGGATTC CAATTAAAAC TACCTCTATC AGAAAAAAAG 39689 .......... .......... .......... .......... .......... .......... 388 AAGATCCCAT TAAAAGTAAC AGATGTTATC TGTGTTGGTG TAGTTTTGAC TTTTGGTTTA 39749 .......... .......... .......... .......... .......... .......... 388 AGTCCTTTTC TGATATTTTC CACCCAATTC AGATTATTCA TATGATCATC TTATCATGCA 39809 .......... .......... .......... .......... .......... .......... 388 GGAGATGTTT TCTATGCAAA CTGGGATGAA GTACTTATTG GGGCTACAGC 39859 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAGATGTTT TCTATGCAAA CTGGGATGAA GTACTTATTG GGGCTACAGC 437 hqPGS_C08HBa0320P23.1+_SGN-E330659+ (36750 36892,38347 38446,38563 38651,38835 38890,39811 39859) ******************************************************************************** EST sequence 47 +strand 467 n (File: SGN-E325987+) 1 AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA AGTTACATCA GCTCCTTCTC 61 TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT GCGCAGTTAC AGTCATTCAC 121 AAGTCTCTCG CTCTCGTTCT TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA 181 GAGGGGATCC TAACTCGGAT GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGAATTG 241 TAGTTATAGG AGGCAGCGGC TTTGTTGGCT CTGCAATATG CAAGGCCGCA GTGTCAGAGG 301 GTATAGAGGT CATAAGTCTG AGCAGATCAG GGCGTCCCTC TAAATCAGAC TCATGGGTAG 361 ATCAAGTCAC TTGGATAACA GGAGATGTTT TCTATGCAAA CTGGGATGAA GTACTTATTG 421 GGGCTACAGC AGTTGTTTCA ACTTTAGGAG GTTTTGGTTC TGATGAA Predicted gene structure (within gDNA segment 36157 to 40506): Exon 1 36757 36892 ( 136 n); cDNA 1 136 ( 136 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 137 236 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 237 325 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 326 381 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39896 ( 86 n); cDNA 382 467 ( 86 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E325987+ 1.000 467 1.000 C PGS_C08HBa0320P23.1+_SGN-E325987+ (36757 36892,38347 38446,38563 38651,38835 38890,39811 39896) Alignment (genomic DNA sequence = upper lines): AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA AGTTACATCA GCTCCTTCTC 36816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATGGC GACTTTCTCA AACATCGGTG CCATTTGCAA AGTTACATCA GCTCCTTCTC 60 TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT GCGCAGTTAC AGTCATTCAC 36876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCAGCAC TAGTAGTAGA GCTCTCTTTC CTACGACTTT GCGCAGTTAC AGTCATTCAC 120 AAGTCTCTCG CTCTCGGTCA GTATTCCTTG ATTTGGCTCA ACTTCTAATG CTCTTTTATT 36936 |||||||||| |||||| AAGTCTCTCG CTCTCG.... .......... .......... .......... .......... 136 TGTGATTTGA GGTTTATGAG TTTTGAATTC TATTCCATAG GTGGATTTAT TCGGGATTAA 36996 .......... .......... .......... .......... .......... .......... 136 AGTCCTGAGA TTATAATTCC AAGTTAGATA TCAAGTATTA AGCCTACAAT AAAATTTATA 37056 .......... .......... .......... .......... .......... .......... 136 ATCATTTTTG GTTGATAGGA TTAACTTATA CCATCAACGA AATGCAGTAT AAATTTGGTT 37116 .......... .......... .......... .......... .......... .......... 136 CGGGATTAAT CCTTGTATAT CCCAAGTTAT TGGATTCTAA ATTAATAATT TAGGTATATT 37176 .......... .......... .......... .......... .......... .......... 136 TAGTTGATTT TTGATATAAA TTCAAGGTTT GGATCGGTTC ACCGGAGAGC TAGCTCCGCT 37236 .......... .......... .......... .......... .......... .......... 136 CCCAGTACTT TTTGGGCTGT AATTTGTCTA GGATGGTTGA AAAGAGCTTG CTGATTGAAT 37296 .......... .......... .......... .......... .......... .......... 136 AAGAATATGA CAAACAAAAA ATCACACTGC CTCAGGGAAA GAGAAAGGAA ATACTATTCA 37356 .......... .......... .......... .......... .......... .......... 136 AAACCTAACC TAATGGTTGT AATTTAGTTT CTTTAAGAGT TGTAGAGGCA GGCTTCTCAT 37416 .......... .......... .......... .......... .......... .......... 136 TTCTCAAATG TTACACCATT TATCTTGATG AAAACATTTA TCGTTTGATC AGTTATTGTT 37476 .......... .......... .......... .......... .......... .......... 136 ACACACTCGA GAAATTAAGA TCTCTTGGTC ACTTACAAAA TGAATAGAAG AAAATGGTCT 37536 .......... .......... .......... .......... .......... .......... 136 TTCTAGTTAC TACATGAAGA GTTACTATAA GTCAACATAG CTAACAGTTC TAAAAAAAAA 37596 .......... .......... .......... .......... .......... .......... 136 TTAAGAAGTT TGAGAAGATT ATAGTCAAAG GGAAAATTGT TTAATTCCCC AAATAGTAAC 37656 .......... .......... .......... .......... .......... .......... 136 ACCTTAATAT AAAGTGGGGC GGAGGGAATA TAAATGATCC ACATAAAATG TACATGACCA 37716 .......... .......... .......... .......... .......... .......... 136 TGCTGTTCCA GATCAATCAA TCAATGAACC AAACTACCCC TCAGTCTCAA ATTAGTTGGG 37776 .......... .......... .......... .......... .......... .......... 136 GATAGTCATT TCGCTCTTTT AAGGTCCATT TACCTCTAAG AGTATTCATT ATATGGTTAT 37836 .......... .......... .......... .......... .......... .......... 136 TTGGAGTACT ACTTTTTGGC TGTCTGTCTA CATACAATGA CCTTTTTCCT TTATCTGATC 37896 .......... .......... .......... .......... .......... .......... 136 ATGAAGTTTT GTAAAACTCA CGCATGTGGA GTTGGTTTTC AAAATCCTAA CAAAGGTAAG 37956 .......... .......... .......... .......... .......... .......... 136 GAATGCAGAT TAAAAAATTA GAATTTCAGC TTTAAAAATA ATGTACAAAG AAAACTAAGA 38016 .......... .......... .......... .......... .......... .......... 136 ATTATATCGT CAGTGTATAT AGAAATAAAA GAGTGATCAT TCAGATTGTC AGTTCTGTAC 38076 .......... .......... .......... .......... .......... .......... 136 CTTAGCAATT GTTGTCACAT CATGTTCCAG GATGATCTTT TTGATTTTTT AGTTCCATGT 38136 .......... .......... .......... .......... .......... .......... 136 CAGGCATAGT TGAATTTTCT TTCTTTCCTT TTTCCACAGC AGAAGCGAGA TATGTAGATC 38196 .......... .......... .......... .......... .......... .......... 136 TGCACAGAAA ACTATATCCT TTGAAAGACT AAACTAGTTT TCTGAGAACT GGATTAAGGT 38256 .......... .......... .......... .......... .......... .......... 136 TCCAAGTAAA ACTGTATGCG CTGTATTCGC AATCTTTGGG ATGATCAGAA TTCTAGCCTG 38316 .......... .......... .......... .......... .......... .......... 136 ACATGTTTGC AATGTTTCTC TTCTTTTTAG TTCTTGCCGA CTTTGTATTA AAAGCAGTTA 38376 |||||||||| |||||||||| |||||||||| .......... .......... .......... TTCTTGCCGA CTTTGTATTA AAAGCAGTTA 166 TGCCGAAGCT GTCAGAGGGG ATCCTAACTC GGATGCAATT GATGTTGTAG CAGATGTTAA 38436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGAAGCT GTCAGAGGGG ATCCTAACTC GGATGCAATT GATGTTGTAG CAGATGTTAA 226 GACTGAACGA GTATTACTTC ATGACTTAAG CATCTTCTCT TTCTCCTTTT GAGATCAAAT 38496 |||||||||| GACTGAACGA .......... .......... .......... .......... .......... 236 CCATTTACAA CTGTCTCAAT AGCAACTACT TGTCATTCAC TTTTTTTTTC TTTTTTCTTT 38556 .......... .......... .......... .......... .......... .......... 236 TAACAGATTG TAGTTATAGG AGGCAGCGGC TTTGTTGGCT CTGCAATATG CAAGGCCGCA 38616 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......ATTG TAGTTATAGG AGGCAGCGGC TTTGTTGGCT CTGCAATATG CAAGGCCGCA 290 GTGTCAGAGG GTATAGAGGT CATAAGTCTG AGCAGGTATT TTTAATACAT GACTGAGCAG 38676 |||||||||| |||||||||| |||||||||| ||||| GTGTCAGAGG GTATAGAGGT CATAAGTCTG AGCAG..... .......... .......... 325 TTCAATAGGG ATTTCAATGA ATAAAAGAAT CTTTATAGAT TGAATGTGAT GGATCTTAAA 38736 .......... .......... .......... .......... .......... .......... 325 CATTTTCTGT TGATTCAGAA GGATCTATAC AATTGCTCTA TCCTCTTATG CTACTTTTTC 38796 .......... .......... .......... .......... .......... .......... 325 GTATTATGGG TTCTCAAATT TTAGTATTTC CTACTCAGAT CAGGGCGTCC CTCTAAATCA 38856 || |||||||||| |||||||||| .......... .......... .......... ........AT CAGGGCGTCC CTCTAAATCA 347 GACTCATGGG TAGATCAAGT CACTTGGATA ACAGGCAGGT TCATTTCTTC ATCATGCACT 38916 |||||||||| |||||||||| |||||||||| |||| GACTCATGGG TAGATCAAGT CACTTGGATA ACAG...... .......... .......... 381 TGAGTAGGTT GACAATGAAT TCAATTAAAA GATTTACATG GATGAAATCA ATGTAGAAGT 38976 .......... .......... .......... .......... .......... .......... 381 TGGTTTCCAG GCCCTCTTTC TGATGAAAGC CATCGTAGTT CATTGAGAAT GGATAATAAT 39036 .......... .......... .......... .......... .......... .......... 381 GTTATTGATG AATGAATCCC CCATATATTT TTTGGTTGGT GTGTGCAGTG GTGGATCTAG 39096 .......... .......... .......... .......... .......... .......... 381 GATTTTGAGG TTATTGTGTG CTCTGAAAGT TGTGGAGTCA AAAATATAAA ATGGATAATA 39156 .......... .......... .......... .......... .......... .......... 381 ATGTTATTGA TGAATGAATC CCACATATAT TTTTTGGTTG GTGTGTCATG TGTGTGTGGG 39216 .......... .......... .......... .......... .......... .......... 381 GTAAATGTGT TTGCTGAAGA TACTTGAAGA CTCTCTCGCC ACACTAAATA ACGGAAAGAT 39276 .......... .......... .......... .......... .......... .......... 381 TAATCTACTG AAGTTCCTCA TAGTCAAGCA AAGTAACTCT GTCACTAGAA AAAAAAGGTT 39336 .......... .......... .......... .......... .......... .......... 381 CAGTTTACCC TTAAAGATGA ATGGGGGGGG GGGGCAGACT CTATTTTGCA ACCATTTGAA 39396 .......... .......... .......... .......... .......... .......... 381 AGACCAAATA TAATTCTCTA TTATTCATTC TATGATTGAA GCCTAGAAGT CAAAACATGT 39456 .......... .......... .......... .......... .......... .......... 381 TGTCAAAAAC TGGATATTCA ATCTTTGCCA TAGTCCATAG GTGAAGATTT ACAAAAGGAG 39516 .......... .......... .......... .......... .......... .......... 381 CAAGTTCTAA AGTTCCTTCA AACAATATGA ATCCCGGACC AAACAGGAGC GAAGAAGTGT 39576 .......... .......... .......... .......... .......... .......... 381 AAAGAGTCTT TAAACTACTG GACTGTTTTG CCTAGTGTGG TTTTTATGGT CAATTGGTCA 39636 .......... .......... .......... .......... .......... .......... 381 TATGCGAACT TGAAAGAGGA TTCCAATTAA AACTACCTCT ATCAGAAAAA AAGAAGATCC 39696 .......... .......... .......... .......... .......... .......... 381 CATTAAAAGT AACAGATGTT ATCTGTGTTG GTGTAGTTTT GACTTTTGGT TTAAGTCCTT 39756 .......... .......... .......... .......... .......... .......... 381 TTCTGATATT TTCCACCCAA TTCAGATTAT TCATATGATC ATCTTATCAT GCAGGAGATG 39816 |||||| .......... .......... .......... .......... .......... ....GAGATG 387 TTTTCTATGC AAACTGGGAT GAAGTACTTA TTGGGGCTAC AGCAGTTGTT TCAACTTTAG 39876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTATGC AAACTGGGAT GAAGTACTTA TTGGGGCTAC AGCAGTTGTT TCAACTTTAG 447 GAGGTTTTGG TTCTGATGAA 39896 |||||||||| |||||||||| GAGGTTTTGG TTCTGATGAA 467 hqPGS_C08HBa0320P23.1+_SGN-E325987+ (36757 36892,38347 38446,38563 38651,38835 38890,39811 39896) ******************************************************************************** EST sequence 90 -strand 671 n (File: SGN-E372516-) 1 GAACAAATGT TTAGGATCAA TGGTGAAGCT AATGTTGTGG CTGTCAATGC TGCTAAAGAA 61 TATGGGACCC CTAAGTTCAT ATTGATTTCT GTGCATGATT ACAATCTACC ATCATTCCTC 121 CAATCAAGTT ACTTCATAGG GAAAAGAAAA GCAGAATCAG AAGTTCTTTC CAAATTCCCT 181 AGCTCAGGTG TGGTTCTTAG ACCTGCCTTT ATATATGGGA AGAGGAAGGT TGACGGCTTC 241 GAGATCCCTC TAGATTTGAT TGGAGAACCT CTTGAAAAGT TATTACGTGC AACAGAGAGC 301 TTCACTAAAC CATTGAACTC GTTGCCAGCA TCCGATTTAA TTCTTGCCCC TCCTGTTAGC 361 GTGGACGACG TTGCTTATGC AGTGATAAAT GCTGTTAAGG ATGACGACTG TTTTGGCATT 421 TTTACCATCA ACCAAATCAA AGAAGCAGCA GCAGGGGTTA AGGTGTAAGA TAAGGTCCAC 481 ATCAAAAAGA AAAATGACAT ACATCTTGTA ACAAAATTAT ATATGTAGAA CATGTATCAT 541 GTCATACAAA ACTCTTGCTT ATGATATCCA TAGTATAATG GACCTTTTGA TGCTAAAATA 601 GCCTATTTTC ATCCTGTATT TACTAGTAAG AAGAGCAAAT CAATACTCCA TCTTGCAAAA 661 CAAAAAAAAA A Predicted gene structure (within gDNA segment 39194 to 42182): Exon 1 39894 39957 ( 64 n); cDNA 1 64 ( 64 n); score: 0.984 Intron 1 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 40682 40804 ( 123 n); cDNA 65 187 ( 123 n); score: 1.000 Intron 2 40805 41017 ( 213 n); Pd: 0.973 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 41018 41492 ( 475 n); cDNA 188 662 ( 475 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E372516- 0.998 662 0.987 C PGS_C08HBa0320P23.1+_SGN-E372516- (39894 39957,40682 40804,41018 41492) Alignment (genomic DNA sequence = upper lines): GAACAAATGC TTAGGATCAA TGGTGAAGCT AATGTTGTGG CTGTCAATGC TGCTAAAGAA 39953 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAAATGT TTAGGATCAA TGGTGAAGCT AATGTTGTGG CTGTCAATGC TGCTAAAGAA 60 TATGGTCAGT AGCTTTCATT TTATTTATTT GAAGAAATCT GTAAAGCTGA AGTGACCTTT 40013 |||| TATG...... .......... .......... .......... .......... .......... 64 AGTGATAAAC TTTTGAGTGG TTAGTTTTTG CAGTGCCTAT CTTCTCTATC TTATTTTTAC 40073 .......... .......... .......... .......... .......... .......... 64 TTTAACTTGC AATATATAAT GAATCAGATA AGTCATGCTT CCCTGTGATG AAGCATGAGG 40133 .......... .......... .......... .......... .......... .......... 64 CATGGTTGAC TCCATTATTT ACTTTAGCTC AGAGCTAAAG ATTTTAATGA GCAGAAAATT 40193 .......... .......... .......... .......... .......... .......... 64 CTGCTCGTCA CTTCTAATTT AATGACATTT ACCAACTGAA GCAAAAGCTG AATCCGTCCC 40253 .......... .......... .......... .......... .......... .......... 64 CAGATTGAAA TAAAATGCTT GAGTAAGTAT AAATTGTAGG ATATGCATGA AGTAACTGCT 40313 .......... .......... .......... .......... .......... .......... 64 ATTATAGATA TTTTGCATTT CTCTTGCACT GGCTGGGTGC TGGTCTGTTT ATTAATAGAA 40373 .......... .......... .......... .......... .......... .......... 64 CTTAGCTTAC TTATCAAACA ACTATTACTA CCCCTTAATG TTAAACTAGT TGGGATTCGT 40433 .......... .......... .......... .......... .......... .......... 64 TATATAGAAC TTCATGATCT ATTTTTCTTC ACCTAGACCT GTTATCCAGT ATTCAATAAT 40493 .......... .......... .......... .......... .......... .......... 64 TTGGGATTGT CTAAAACAGA GGTTCTCTAC AATTTGCAAT TAACAGTATG GTACTGCTTT 40553 .......... .......... .......... .......... .......... .......... 64 GCTGTGTTTA AGAACAACCC TTATGGCAGG TTTAAACTAG TCATTTTGCA CACCATGTTA 40613 .......... .......... .......... .......... .......... .......... 64 TCATTGTTCC CTTGTTTCTC CATAACTACT CATGCCAAGT GTTACATTAT ATTTTTTGTT 40673 .......... .......... .......... .......... .......... .......... 64 ATTTGCAGGG ACCCCTAAGT TCATATTGAT TTCTGTGCAT GATTACAATC TACCATCATT 40733 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GG ACCCCTAAGT TCATATTGAT TTCTGTGCAT GATTACAATC TACCATCATT 116 CCTCCAATCA AGTTACTTCA TAGGGAAAAG AAAAGCAGAA TCAGAAGTTC TTTCCAAATT 40793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCAATCA AGTTACTTCA TAGGGAAAAG AAAAGCAGAA TCAGAAGTTC TTTCCAAATT 176 CCCTAGCTCA GGTACTCTAT TAGATGTTTA CTTCCCATTG ATGTGACCGT GGCAGTCTGA 40853 |||||||||| | CCCTAGCTCA G......... .......... .......... .......... .......... 187 AGCTTACGGT TGTCTCTTTG AAATTATTAT GTACAACAGC ACCATGTCTG CAACAAGTTT 40913 .......... .......... .......... .......... .......... .......... 187 GTAAATGAAA AGGGAAAGTG TTCTGCTTGT TGCTTACCCT GAACTAGTCC AGCCACAATT 40973 .......... .......... .......... .......... .......... .......... 187 TTTTTGTTAC TTACATACTT GAATTTCTCA CTGAAATGTA ACAGGTGTGG TTCTTAGACC 41033 |||||| |||||||||| .......... .......... .......... .......... ....GTGTGG TTCTTAGACC 203 TGCCTTTATA TATGGGAAGA GGAAGGTTGA CGGCTTCGAG ATCCCTCTAG ATTTGATTGG 41093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTTTATA TATGGGAAGA GGAAGGTTGA CGGCTTCGAG ATCCCTCTAG ATTTGATTGG 263 AGAACCTCTT GAAAAGTTAT TACGTGCAAC AGAGAGCTTC ACTAAACCAT TGAACTCGTT 41153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACCTCTT GAAAAGTTAT TACGTGCAAC AGAGAGCTTC ACTAAACCAT TGAACTCGTT 323 GCCAGCATCC GATTTAATTC TTGCCCCTCC TGTTAGCGTG GACGACGTTG CTTATGCAGT 41213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGCATCC GATTTAATTC TTGCCCCTCC TGTTAGCGTG GACGACGTTG CTTATGCAGT 383 GATAAATGCT GTTAAGGATG ACGACTGTTT TGGCATTTTT ACCATCAACC AAATCAAAGA 41273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAATGCT GTTAAGGATG ACGACTGTTT TGGCATTTTT ACCATCAACC AAATCAAAGA 443 AGCAGCAGCA GGGGTTAAGG TGTAAGATAA GGTCCACATC AAAAAGAAAA ATGACATACA 41333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCAGCA GGGGTTAAGG TGTAAGATAA GGTCCACATC AAAAAGAAAA ATGACATACA 503 TCTTGTAACA AAATTATATA TGTAGAACAT GTATCATGTC ATACAAAACT CTTGCTTATG 41393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTAACA AAATTATATA TGTAGAACAT GTATCATGTC ATACAAAACT CTTGCTTATG 563 ATATCCATAG TATAATGGAC CTTTTGATGC TAAAATAGCC TATTTTCATC CTGTATTTAC 41453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCCATAG TATAATGGAC CTTTTGATGC TAAAATAGCC TATTTTCATC CTGTATTTAC 623 TAGTAAGAAG AGCAAATCAA TACTCCATCT TGCAAAACA 41492 |||||||||| |||||||||| |||||||||| ||||||||| TAGTAAGAAG AGCAAATCAA TACTCCATCT TGCAAAACA 662 hqPGS_C08HBa0320P23.1+_SGN-E372516- (39894 39957,40682 40804,41018 41492) ******************************************************************************** EST sequence 116 -strand 754 n (File: SGN-E342930-) 1 GGATCAATGG TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT GGGACCCNTA 61 AGTTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTCCTCCAA TCAAGTTACT 121 TCATAGGGAA AAGAAAAGCA GAATCAGAAG TTCTTTCCAA ATTCCCTAGC TCAGGTGTGG 181 TTCTTAGACC TGCCTTTATA TATGGGAAGA GGAAGGTTGA CGGCTTCGAG ATCCCTCTAG 241 ATTTGATTGG AGAACCTCTT GAAAAGTTAT TACGTGCAAC AGAGAGCTTC ACTAAACCAT 301 TGAACTCGTT GCCAGCATCC GATTTAATTC TTGCCCCTCC TGTTAGCGTG GACGACGTTG 361 CTTATGCAGT GATAAATGCT GTTAAGGATG ACGACTGTTT TGGCATTTTT ACCATCAACC 421 AAATCAAAGA AGCAGCAGCA GGGGTTAAGG TGTAAGATAA GGTCCACATC AAAAAGAAAA 481 ATGACATACA TCTTGTAACA AAATTATATA TGTAGAACAT GTATCATGTC ATACAAAACT 541 CTTGCTTATG ATATCCATAG TATAATGGAC CTTTTGATGC TAAAATAGCC TATTTTCATC 601 CTGTATTTAC TAGTAAGAAG AGCAAATCAA TACTCCATCT TGCAAAACAC CATGTGTTGG 661 AAGTCTTGGA GATTGAAATT ATAGCAGTGA ATTGAACCGC GCTTCGCGCG GACATAATTA 721 TTGTTAAAGT AGTTCTTTTA GAAGACTTAA GTAA Predicted gene structure (within gDNA segment 39297 to 42197): Exon 1 39907 39957 ( 51 n); cDNA 1 51 ( 51 n); score: 1.000 Intron 1 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 2 40682 40804 ( 123 n); cDNA 52 174 ( 123 n); score: 0.992 Intron 2 40805 41017 ( 213 n); Pd: 0.973 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 41018 41597 ( 580 n); cDNA 175 754 ( 580 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E342930- 0.999 754 1.000 C PGS_C08HBa0320P23.1+_SGN-E342930- (39907 39957,40682 40804,41018 41597) Alignment (genomic DNA sequence = upper lines): GGATCAATGG TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT GGTCAGTAGC 39966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GGATCAATGG TGAAGCTAAT GTTGTGGCTG TCAATGCTGC TAAAGAATAT G......... 51 TTTCATTTTA TTTATTTGAA GAAATCTGTA AAGCTGAAGT GACCTTTAGT GATAAACTTT 40026 .......... .......... .......... .......... .......... .......... 51 TGAGTGGTTA GTTTTTGCAG TGCCTATCTT CTCTATCTTA TTTTTACTTT AACTTGCAAT 40086 .......... .......... .......... .......... .......... .......... 51 ATATAATGAA TCAGATAAGT CATGCTTCCC TGTGATGAAG CATGAGGCAT GGTTGACTCC 40146 .......... .......... .......... .......... .......... .......... 51 ATTATTTACT TTAGCTCAGA GCTAAAGATT TTAATGAGCA GAAAATTCTG CTCGTCACTT 40206 .......... .......... .......... .......... .......... .......... 51 CTAATTTAAT GACATTTACC AACTGAAGCA AAAGCTGAAT CCGTCCCCAG ATTGAAATAA 40266 .......... .......... .......... .......... .......... .......... 51 AATGCTTGAG TAAGTATAAA TTGTAGGATA TGCATGAAGT AACTGCTATT ATAGATATTT 40326 .......... .......... .......... .......... .......... .......... 51 TGCATTTCTC TTGCACTGGC TGGGTGCTGG TCTGTTTATT AATAGAACTT AGCTTACTTA 40386 .......... .......... .......... .......... .......... .......... 51 TCAAACAACT ATTACTACCC CTTAATGTTA AACTAGTTGG GATTCGTTAT ATAGAACTTC 40446 .......... .......... .......... .......... .......... .......... 51 ATGATCTATT TTTCTTCACC TAGACCTGTT ATCCAGTATT CAATAATTTG GGATTGTCTA 40506 .......... .......... .......... .......... .......... .......... 51 AAACAGAGGT TCTCTACAAT TTGCAATTAA CAGTATGGTA CTGCTTTGCT GTGTTTAAGA 40566 .......... .......... .......... .......... .......... .......... 51 ACAACCCTTA TGGCAGGTTT AAACTAGTCA TTTTGCACAC CATGTTATCA TTGTTCCCTT 40626 .......... .......... .......... .......... .......... .......... 51 GTTTCTCCAT AACTACTCAT GCCAAGTGTT ACATTATATT TTTTGTTATT TGCAGGGACC 40686 ||||| .......... .......... .......... .......... .......... .....GGACC 56 CCTAAGTTCA TATTGATTTC TGTGCATGAT TACAATCTAC CATCATTCCT CCAATCAAGT 40746 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CNTAAGTTCA TATTGATTTC TGTGCATGAT TACAATCTAC CATCATTCCT CCAATCAAGT 116 TACTTCATAG GGAAAAGAAA AGCAGAATCA GAAGTTCTTT CCAAATTCCC TAGCTCAGGT 40806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TACTTCATAG GGAAAAGAAA AGCAGAATCA GAAGTTCTTT CCAAATTCCC TAGCTCAG.. 174 ACTCTATTAG ATGTTTACTT CCCATTGATG TGACCGTGGC AGTCTGAAGC TTACGGTTGT 40866 .......... .......... .......... .......... .......... .......... 174 CTCTTTGAAA TTATTATGTA CAACAGCACC ATGTCTGCAA CAAGTTTGTA AATGAAAAGG 40926 .......... .......... .......... .......... .......... .......... 174 GAAAGTGTTC TGCTTGTTGC TTACCCTGAA CTAGTCCAGC CACAATTTTT TTGTTACTTA 40986 .......... .......... .......... .......... .......... .......... 174 CATACTTGAA TTTCTCACTG AAATGTAACA GGTGTGGTTC TTAGACCTGC CTTTATATAT 41046 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGTTC TTAGACCTGC CTTTATATAT 203 GGGAAGAGGA AGGTTGACGG CTTCGAGATC CCTCTAGATT TGATTGGAGA ACCTCTTGAA 41106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGAGGA AGGTTGACGG CTTCGAGATC CCTCTAGATT TGATTGGAGA ACCTCTTGAA 263 AAGTTATTAC GTGCAACAGA GAGCTTCACT AAACCATTGA ACTCGTTGCC AGCATCCGAT 41166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTATTAC GTGCAACAGA GAGCTTCACT AAACCATTGA ACTCGTTGCC AGCATCCGAT 323 TTAATTCTTG CCCCTCCTGT TAGCGTGGAC GACGTTGCTT ATGCAGTGAT AAATGCTGTT 41226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTCTTG CCCCTCCTGT TAGCGTGGAC GACGTTGCTT ATGCAGTGAT AAATGCTGTT 383 AAGGATGACG ACTGTTTTGG CATTTTTACC ATCAACCAAA TCAAAGAAGC AGCAGCAGGG 41286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGATGACG ACTGTTTTGG CATTTTTACC ATCAACCAAA TCAAAGAAGC AGCAGCAGGG 443 GTTAAGGTGT AAGATAAGGT CCACATCAAA AAGAAAAATG ACATACATCT TGTAACAAAA 41346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAAGGTGT AAGATAAGGT CCACATCAAA AAGAAAAATG ACATACATCT TGTAACAAAA 503 TTATATATGT AGAACATGTA TCATGTCATA CAAAACTCTT GCTTATGATA TCCATAGTAT 41406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATATGT AGAACATGTA TCATGTCATA CAAAACTCTT GCTTATGATA TCCATAGTAT 563 AATGGACCTT TTGATGCTAA AATAGCCTAT TTTCATCCTG TATTTACTAG TAAGAAGAGC 41466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGACCTT TTGATGCTAA AATAGCCTAT TTTCATCCTG TATTTACTAG TAAGAAGAGC 623 AAATCAATAC TCCATCTTGC AAAACACCAT GTGTTGGAAG TCTTGGAGAT TGAAATTATA 41526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAATAC TCCATCTTGC AAAACACCAT GTGTTGGAAG TCTTGGAGAT TGAAATTATA 683 GCAGTGAATT GAACCGCGCT TCGCGCGGAC ATAATTATTG TTAAAGTAGT TCTTTTAGAA 41586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTGAATT GAACCGCGCT TCGCGCGGAC ATAATTATTG TTAAAGTAGT TCTTTTAGAA 743 GACTTAAGTA A 41597 |||||||||| | GACTTAAGTA A 754 hqPGS_C08HBa0320P23.1+_SGN-E342930- (39907 39957,40682 40804,41018 41597) ******************************************************************************** EST sequence 61 +strand 476 n (File: SGN-E345999+) 1 CAATCAAGTT ACTTCATAGG GAAAAGAAAA GCAGAATCAG AAGTTCTTTC CAAATTCCCT 61 AGCTCAGGTG TGGTTCTTAG ACCTGCCTTT ATATATGGGA AGAGGAAGGT TGACGGCTTC 121 GAGATCCCTC TAGATTTGAT TGGAGAACCT CTTGAAAAGT TATTACGTGC AACAGAGAGC 181 TTCACTAAAC CATTGAACTC GTTGCCAGCA TCCGATTTAA TTCTTGCCCC TCCTGTTAGC 241 GTGGACGACG TTGCTTATGC AGTGATAAAT GCTGTTAAGG ATGACGACTG TTTTGGCATT 301 TTTACCATCA ACCAAATCAA AGAAGCAGCA GCAGGGGTTA AGGTGTAAGA TAAGGTCCAC 361 ATCAAAAAGA AAAATGACAT ACATCTTGTA ACAAAATTAT ATATGTAGAA CATGTATCAT 421 GTCATACAAA ACTCTTGCTT ATGAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 40138 to 42324): Exon 1 40738 40804 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 40805 41017 ( 213 n); Pd: 0.973 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 41018 41393 ( 376 n); cDNA 68 443 ( 376 n); score: 1.000 PPA cDNA 444 476 MATCH C08HBa0320P23.1+ SGN-E345999+ 1.000 443 0.931 C PGS_C08HBa0320P23.1+_SGN-E345999+ (40738 40804,41018 41393) Alignment (genomic DNA sequence = upper lines): CAATCAAGTT ACTTCATAGG GAAAAGAAAA GCAGAATCAG AAGTTCTTTC CAAATTCCCT 40797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCAAGTT ACTTCATAGG GAAAAGAAAA GCAGAATCAG AAGTTCTTTC CAAATTCCCT 60 AGCTCAGGTA CTCTATTAGA TGTTTACTTC CCATTGATGT GACCGTGGCA GTCTGAAGCT 40857 ||||||| AGCTCAG... .......... .......... .......... .......... .......... 67 TACGGTTGTC TCTTTGAAAT TATTATGTAC AACAGCACCA TGTCTGCAAC AAGTTTGTAA 40917 .......... .......... .......... .......... .......... .......... 67 ATGAAAAGGG AAAGTGTTCT GCTTGTTGCT TACCCTGAAC TAGTCCAGCC ACAATTTTTT 40977 .......... .......... .......... .......... .......... .......... 67 TGTTACTTAC ATACTTGAAT TTCTCACTGA AATGTAACAG GTGTGGTTCT TAGACCTGCC 41037 |||||||||| |||||||||| .......... .......... .......... .......... GTGTGGTTCT TAGACCTGCC 87 TTTATATATG GGAAGAGGAA GGTTGACGGC TTCGAGATCC CTCTAGATTT GATTGGAGAA 41097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATATATG GGAAGAGGAA GGTTGACGGC TTCGAGATCC CTCTAGATTT GATTGGAGAA 147 CCTCTTGAAA AGTTATTACG TGCAACAGAG AGCTTCACTA AACCATTGAA CTCGTTGCCA 41157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTGAAA AGTTATTACG TGCAACAGAG AGCTTCACTA AACCATTGAA CTCGTTGCCA 207 GCATCCGATT TAATTCTTGC CCCTCCTGTT AGCGTGGACG ACGTTGCTTA TGCAGTGATA 41217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCCGATT TAATTCTTGC CCCTCCTGTT AGCGTGGACG ACGTTGCTTA TGCAGTGATA 267 AATGCTGTTA AGGATGACGA CTGTTTTGGC ATTTTTACCA TCAACCAAAT CAAAGAAGCA 41277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTTA AGGATGACGA CTGTTTTGGC ATTTTTACCA TCAACCAAAT CAAAGAAGCA 327 GCAGCAGGGG TTAAGGTGTA AGATAAGGTC CACATCAAAA AGAAAAATGA CATACATCTT 41337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCAGGGG TTAAGGTGTA AGATAAGGTC CACATCAAAA AGAAAAATGA CATACATCTT 387 GTAACAAAAT TATATATGTA GAACATGTAT CATGTCATAC AAAACTCTTG CTTATG 41393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTAACAAAAT TATATATGTA GAACATGTAT CATGTCATAC AAAACTCTTG CTTATG 443 hqPGS_C08HBa0320P23.1+_SGN-E345999+ (40738 40804,41018 41393) ******************************************************************************** EST sequence 10 +strand 482 n (File: SGN-E337896+) 1 TTACTTCATA GGGAAAAGAA AAGCAGAATC AGAAGTTCTT TCCAAATTCC CTAGCTCAGG 61 TGTGGTTCTT AGACCTGCCT TTATATATGG GAAGAGGAAG GTTGACGGCT TCGAGATCCC 121 TCTAGATTTG ATTGGAGAAC CTCTTGAAAA GTTATTACGT GCAACAGAGA GCTTCACTAA 181 ACCATTGAAC TCGTTGCCAG CATCCGATTT AATTCTTGCC CCTCCTGTTA GCGTGGACGA 241 CGTTGCTTAT GCAGTGATAA ATGCTGTTAA GGATGACGAC TGTTTTGGCA TTTTTACCAT 301 CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA GATAAGGTCC ACATCAAAAA 361 GAAAAATGAC ATACATCTTG TAACAAAATT ATATATGTAG AACATGTATC ATGTCATACA 421 AAACTCTTGC TTATGATATC CATAGTATAA TGGACCTTTT GATGCTAAAA AAAAAAAAAA 481 AA Predicted gene structure (within gDNA segment 40146 to 42158): Exon 1 40746 40804 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 40805 41017 ( 213 n); Pd: 0.973 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 41018 41427 ( 410 n); cDNA 60 469 ( 410 n); score: 1.000 PPA cDNA 470 482 MATCH C08HBa0320P23.1+ SGN-E337896+ 1.000 469 0.973 C PGS_C08HBa0320P23.1+_SGN-E337896+ (40746 40804,41018 41427) Alignment (genomic DNA sequence = upper lines): TTACTTCATA GGGAAAAGAA AAGCAGAATC AGAAGTTCTT TCCAAATTCC CTAGCTCAGG 40805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTACTTCATA GGGAAAAGAA AAGCAGAATC AGAAGTTCTT TCCAAATTCC CTAGCTCAG. 59 TACTCTATTA GATGTTTACT TCCCATTGAT GTGACCGTGG CAGTCTGAAG CTTACGGTTG 40865 .......... .......... .......... .......... .......... .......... 59 TCTCTTTGAA ATTATTATGT ACAACAGCAC CATGTCTGCA ACAAGTTTGT AAATGAAAAG 40925 .......... .......... .......... .......... .......... .......... 59 GGAAAGTGTT CTGCTTGTTG CTTACCCTGA ACTAGTCCAG CCACAATTTT TTTGTTACTT 40985 .......... .......... .......... .......... .......... .......... 59 ACATACTTGA ATTTCTCACT GAAATGTAAC AGGTGTGGTT CTTAGACCTG CCTTTATATA 41045 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTGTGGTT CTTAGACCTG CCTTTATATA 87 TGGGAAGAGG AAGGTTGACG GCTTCGAGAT CCCTCTAGAT TTGATTGGAG AACCTCTTGA 41105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAAGAGG AAGGTTGACG GCTTCGAGAT CCCTCTAGAT TTGATTGGAG AACCTCTTGA 147 AAAGTTATTA CGTGCAACAG AGAGCTTCAC TAAACCATTG AACTCGTTGC CAGCATCCGA 41165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTATTA CGTGCAACAG AGAGCTTCAC TAAACCATTG AACTCGTTGC CAGCATCCGA 207 TTTAATTCTT GCCCCTCCTG TTAGCGTGGA CGACGTTGCT TATGCAGTGA TAAATGCTGT 41225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAATTCTT GCCCCTCCTG TTAGCGTGGA CGACGTTGCT TATGCAGTGA TAAATGCTGT 267 TAAGGATGAC GACTGTTTTG GCATTTTTAC CATCAACCAA ATCAAAGAAG CAGCAGCAGG 41285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGATGAC GACTGTTTTG GCATTTTTAC CATCAACCAA ATCAAAGAAG CAGCAGCAGG 327 GGTTAAGGTG TAAGATAAGG TCCACATCAA AAAGAAAAAT GACATACATC TTGTAACAAA 41345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTAAGGTG TAAGATAAGG TCCACATCAA AAAGAAAAAT GACATACATC TTGTAACAAA 387 ATTATATATG TAGAACATGT ATCATGTCAT ACAAAACTCT TGCTTATGAT ATCCATAGTA 41405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATATATG TAGAACATGT ATCATGTCAT ACAAAACTCT TGCTTATGAT ATCCATAGTA 447 TAATGGACCT TTTGATGCTA AA 41427 |||||||||| |||||||||| || TAATGGACCT TTTGATGCTA AA 469 hqPGS_C08HBa0320P23.1+_SGN-E337896+ (40746 40804,41018 41427) ******************************************************************************** EST sequence 154 -strand 376 n (File: SGN-E237162-) 1 TCGAGATCCC TCTAGATTTG ATTGGAGAAC CTCTTGAAAA GTTATTACGT GCAACAGAGA 61 GCTTCGCTAA ACCATTGAGC TCGTTGCCAG CATCCGATTT AATTCTTGCC CCTCCTGTTA 121 GCGTGGACAA CGTTGCTTAT GCAGTGATAA ATGCTGTTAA GGATGACGAC TGTTTTGGCA 181 TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA GATAAGGTCC 241 ACATCTAAAA AGAAAAATGG TCAGGCATCC TGTAACAAAA TTATATATGT AGGACATGTA 301 TCATGTCGTA CTCAAGCTCA TGCTTATGAT ATCCATAGTA TAATGGGCCT TTTGATGCTA 361 AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 40459 to 42158): Exon 1 41069 41427 ( 359 n); cDNA 1 362 ( 362 n); score: 0.943 PPA cDNA 363 376 MATCH C08HBa0320P23.1+ SGN-E237162- 0.943 359 0.955 C PGS_C08HBa0320P23.1+_SGN-E237162- (41069 41427) Alignment (genomic DNA sequence = upper lines): TCGAGATCCC TCTAGATTTG ATTGGAGAAC CTCTTGAAAA GTTATTACGT GCAACAGAGA 41128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGATCCC TCTAGATTTG ATTGGAGAAC CTCTTGAAAA GTTATTACGT GCAACAGAGA 60 GCTTCACTAA ACCATTGAAC TCGTTGCCAG CATCCGATTT AATTCTTGCC CCTCCTGTTA 41188 ||||| |||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GCTTCGCTAA ACCATTGAGC TCGTTGCCAG CATCCGATTT AATTCTTGCC CCTCCTGTTA 120 GCGTGGACGA CGTTGCTTAT GCAGTGATAA ATGCTGTTAA GGATGACGAC TGTTTTGGCA 41248 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGACAA CGTTGCTTAT GCAGTGATAA ATGCTGTTAA GGATGACGAC TGTTTTGGCA 180 TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA GATAAGGTCC 41308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA GATAAGGTCC 240 ACATC-AAAA AGAAAAAT-G ACATACATCT TGTAACAAAA TTATATATGT AGAACATGTA 41366 ||||| |||| |||||||| | || |||| |||||||||| |||||||||| || ||||||| ACATCTAAAA AGAAAAATGG TCAGGCATCC TGTAACAAAA TTATATATGT AGGACATGTA 300 TCATGTCATA C-AAAACTCT TGCTTATGAT ATCCATAGTA TAATGGACCT TTTGATGCTA 41425 ||||||| || | || ||| |||||||||| |||||||||| |||||| ||| |||||||||| TCATGTCGTA CTCAAGCTCA TGCTTATGAT ATCCATAGTA TAATGGGCCT TTTGATGCTA 360 AA 41427 || AA 362 hqPGS_C08HBa0320P23.1+_SGN-E237162- (41069 41427) ******************************************************************************** EST sequence 153 -strand 203 n (File: SGN-E236725-) 1 TGTTTTGGCA TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA 61 GATAAGGTCC ACATCAAAAA GAAAAATGAC ATACATCTTG TATCAAAATT ATATATGTAG 121 AACATGTATC ATGTCATACA AAACTCTTGC TTATGATATC CATAGTATAA TGGACCTTTT 181 GATGCTAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 40629 to 42158): Exon 1 41239 41427 ( 189 n); cDNA 1 189 ( 189 n); score: 0.995 PPA cDNA 190 203 MATCH C08HBa0320P23.1+ SGN-E236725- 0.995 189 0.931 C PGS_C08HBa0320P23.1+_SGN-E236725- (41239 41427) Alignment (genomic DNA sequence = upper lines): TGTTTTGGCA TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA 41298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTGGCA TTTTTACCAT CAACCAAATC AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA 60 GATAAGGTCC ACATCAAAAA GAAAAATGAC ATACATCTTG TAACAAAATT ATATATGTAG 41358 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GATAAGGTCC ACATCAAAAA GAAAAATGAC ATACATCTTG TATCAAAATT ATATATGTAG 120 AACATGTATC ATGTCATACA AAACTCTTGC TTATGATATC CATAGTATAA TGGACCTTTT 41418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGTATC ATGTCATACA AAACTCTTGC TTATGATATC CATAGTATAA TGGACCTTTT 180 GATGCTAAA 41427 ||||||||| GATGCTAAA 189 hqPGS_C08HBa0320P23.1+_SGN-E236725- (41239 41427) ******************************************************************************** EST sequence 67 -strand 561 n (File: SGN-E578305-) 1 CACCCATTAA ACGTTACCTT AGAATCTTGG GGCCATCACT ACTATAATCA ATAGACATTT 61 TCAATAGACT ACTCACGGAG GCACTATGCG GAAACCTATG TACTCCTGAT CAATTTGTTT 121 CTACACACTA TGTCGATACA AAAGGTAAAT GAAGTTCAAT AAAAGAGCTA GCAAATACTA 181 AGAAAAATAA ATAACTTTTT CATGTCCAGT AAAATTTCTT CATGTGTATT TAGGAACTAA 241 GTTAAACTTT CGGTTAAGTT TGAGTAAACT CAATAACTTT GATTCAAATT TTATATATAT 301 CTCAATAAAT TTATCAACTC TTCAAATTAT TGATTTAATT GAAATCCAAT AATATAAAAG 361 AATCAAAATT TCAAACTCAT AAGATTTAAA TTGACTATAT ATACTCATTC AGACCACTAT 421 CAAAATTTGT CTTACTTTTC ATTTTAGCGT AAAACTATAA AAATTTTGAC AAACATTTTA 481 CAATATATTT TTTCATCATA TTGCTCTGCA AAAAATTGCA ATGTATAGTA CTTTTCGTAT 541 AGTTTTTGAA TATCTGAATT T Predicted gene structure (within gDNA segment 41869 to 44538): Exon 1 42875 43434 ( 560 n); cDNA 1 561 ( 561 n); score: 0.871 MATCH C08HBa0320P23.1+ SGN-E578305- 0.871 560 0.998 C PGS_C08HBa0320P23.1+_SGN-E578305- (42875 43434) Alignment (genomic DNA sequence = upper lines): CATCCATTAA ACTTTACCTT AAAATCTTGG AGCCACCGCT ACTCTAATCA ATAGACATTT 42934 || ||||||| || ||||||| | |||||||| |||| | || ||| |||||| |||||||||| CACCCATTAA ACGTTACCTT AGAATCTTGG GGCCATCACT ACTATAATCA ATAGACATTT 60 TCAATAGAGA CTACTAACAG AAGCACTATG CGGAAACCTA TATACTCCTA ATCAATTTGT 42994 ||||| ||| ||||| || | | |||||||| |||||||||| | ||||||| |||||||||| TCAAT--AGA CTACTCACGG AGGCACTATG CGGAAACCTA TGTACTCCTG ATCAATTTGT 118 TTCTATGCAC TATGTCGATA CAATAGGTAA ATAAAGTTCA ATAAAAGAGC TAGCAAATAC 43054 ||||| ||| |||||||||| ||| |||||| || ||||||| |||||||||| |||||||||| TTCTACACAC TATGTCGATA CAAAAGGTAA ATGAAGTTCA ATAAAAGAGC TAGCAAATAC 178 TAAAAAAAAT AAA-AA--AT TTC-TGTCCA GTAAAATTTT TTCAGCTGTA TTCAGGAACT 43110 ||| |||||| ||| || | ||| |||||| ||||||||| |||| |||| || ||||||| TAAGAAAAAT AAATAACTTT TTCATGTCCA GTAAAATTTC TTCATGTGTA TTTAGGAACT 238 AAGCTAAACT TTCAGTTAAG TTTGAGTGAA TTGAGTAACT TCAATCCAAA CTTTATATGT 43170 ||| |||||| ||| |||||| ||||||| || | | ||||| | || |||| ||||||| | AAGTTAAACT TTCGGTTAAG TTTGAGTAAA CTCAATAACT TTGATTCAAA TTTTATATAT 298 ATCTTAATAA ATCTATCAAC TCTACAAATT ATTGATTAAA TTAAAATCCA ATAATATAAA 43230 |||| ||||| || ||||||| ||| |||||| ||||||| || || ||||||| |||||||||| ATCTCAATAA ATTTATCAAC TCTTCAAATT ATTGATTTAA TTGAAATCCA ATAATATAAA 358 AGAATCAAAA TTTGAAACTC ATAAGCTTGA AATTGACTAT ATAGACTCTC TTCGTCCACT 43290 |||||||||| ||| |||||| ||||| || | |||||||||| ||| |||| | | ||||| AGAATCAAAA TTTCAAACTC ATAAGATTTA AATTGACTAT ATATACTCAT TCAGACCACT 418 ATCAAAATTT GTCATGCTTG TCATTTTTAG AGTCAATTTA TAAAAATTTT GACTAACATT 43350 |||||||||| ||| | ||| ||| |||||| || || || |||||||||| ||| |||||| ATCAAAATTT GTCTTACTTT TCA-TTTTAG CGTAAAACTA TAAAAATTTT GACAAACATT 477 TTACAATATA TTTTTTCATC ATATTGCTAT GCAAACAATT GCTATGTATA GTACTTTCCG 43410 |||||||||| |||||||||| |||||||| | ||||| |||| || ||||||| ||||||| || TTACAATATA TTTTTTCATC ATATTGCTCT GCAAAAAATT GCAATGTATA GTACTTTTCG 537 TATAGTTTTT GAATATCTGA ATTT 43434 |||||||||| |||||||||| |||| TATAGTTTTT GAATATCTGA ATTT 561 hqPGS_C08HBa0320P23.1+_SGN-E578305- (42875 43434) ******************************************************************************** EST sequence 33 -strand 678 n (File: SGN-E392506-) 1 TTTACAAGGA AAGCAATCCC GTCCACAACA TCGCATCTTG CTTATAAGTT TTTGCAGTGA 61 GTATATGTAA ATATATGTGT ATAGTCATTT TTCCTTTTAC AAAATACATA GTAATATTTT 121 AGTACAAGGA TTGTAGTTTA TTACTAAATT GATATTGTAA TGTCAAATTT GGAACTAATG 181 AAGCCAAAGT TTATATCAAC TCCGTCTAAC AGAGTATCTT TGAGAAGAAA AAGTTAAATC 241 ACGTGAAGCA CAAGATTGTT GATGCTGAGC ACTAGGAAGA GATAACTTCT TGATTTGATT 301 GATGATATAG ATTTTATACA AAGAGAACTA AGGTTGAGCA TGCTCAGTTG CCCATGGATG 361 AAATAAGGAT GCTTCTGGAA GTGGTCAAAT ATCAGCAATA GTATCGCAAT GTAACAGGAA 421 AGGAGAAAAA GAACGACGAC AAGTTTCAAA AGACTACCAT TAACCCTTTG AATCTTCACA 481 AGAACATAGT TGGGATGGTG AAAATCATAA TTCATAATCC TCGGGGAAGA AATTTGCTTC 541 ACCTGAGAAA GAGCAAACAA ACGGATTGAA CTCTTTTTTA GGTGAACTCA ATTTTGTTTG 601 TCCTAAATTA GATGTTTGCT ATTTTATTTT TGACAGAGAA ATAATTTATC TTATTGTTAC 661 TAGCTTCAAA AAAAAAAA Predicted gene structure (within gDNA segment 45148 to 43017): Exon 1 44439 44022 ( 418 n); cDNA 1 427 ( 427 n); score: 0.929 PPA cDNA 668 678 MATCH C08HBa0320P23.1- SGN-E392506- 0.929 418 0.617 C PGS_C08HBa0320P23.1-_SGN-E392506- (44439 44022) Alignment (genomic DNA sequence = upper lines): TTTACAAGGA TAGCAATCCC GTCCACAACA TCGCATCTTG CTTATAAGTT TTTGCAGTGA 44380 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAAGGA AAGCAATCCC GTCCACAACA TCGCATCTTG CTTATAAGTT TTTGCAGTGA 60 GTATATGTAA ATATATGTGT ATAGTCATTT TTCCTTTTAC AAAATACATA GTAATATTTT 44320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATGTAA ATATATGTGT ATAGTCATTT TTCCTTTTAC AAAATACATA GTAATATTTT 120 AGTATAAGGA TTGTAGTTTA TTACTAAATT GATATTGTAA TGTCAAATTT GGAACTAATG 44260 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAAGGA TTGTAGTTTA TTACTAAATT GATATTGTAA TGTCAAATTT GGAACTAATG 180 AAGCCAAAGT TTATATCAAC TCCGTCTAAC AGAGTATCTT TGAGAAGAAA AAGTTAAATC 44200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCAAAGT TTATATCAAC TCCGTCTAAC AGAGTATCTT TGAGAAGAAA AAGTTAAATC 240 ACGTGAAGCA CAAGATTGTT GATGCTGAGC ACTAGGAAGA GATAACTTC- --------TT 44149 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| || ACGTGAAGCA CAAGATTGTT GATGCTGAGC ACTAGGAAGA GATAACTTCT TGATTTGATT 300 GATGATATAG ATTTTATACA AAGAGAACTA AGGTTGAGCA TGCTCCGTTG CCCATGGATG 44089 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| GATGATATAG ATTTTATACA AAGAGAACTA AGGTTGAGCA TGCTCAGTTG CCCATGGATG 360 AAATAAGGAT GCTGCTGGAA GTGGTCGAAT ATCAGCAATA TTATCGCAAT GCAACAGGAA 44029 |||||||||| ||| |||||| |||||| ||| |||||||||| ||||||||| | |||||||| AAATAAGGAT GCTTCTGGAA GTGGTCAAAT ATCAGCAATA GTATCGCAAT GTAACAGGAA 420 AGGAGAA 44022 ||||||| AGGAGAA 427 hqPGS_C08HBa0320P23.1-_SGN-E392506- (44439 44022) ******************************************************************************** EST sequence 108 +strand 655 n (File: SGN-E392507+) 1 CAGCCGCCTC TGTAAAGCTA TACGCAGAAG TCCCATCACA TCATCCTCTT TGCGAGCAAA 61 AACTCCCATC TCCAGGTATA CCTCAAAACT TATCCTATTT TTGTTTCCTT TTTTCTGGTT 121 GTAATTTCAA CCTTTTCTTC CTTCTATGCT ACTGTAATTT GATCATGAAT TATCTAGGCA 181 TTGGAACAAA AATGATTTGC TAATATTACT CTGATAAAAT TATATTCTTT TTCTTAGAAA 241 TAGGGCAAAA GTTCACAATG TTTTGCCAAG TTCTTTCTAT CGGAAGTGTG TCAGTTTTTA 301 TGGAATATTT TTTATATTCG CACTGAAGCC CAGTTATATA TGGACTCATA CATAATAAGG 361 CTCCATTGGT ACGGAAGTAC TCTACCAAAG ATTTGAACCA AGACCTCTGT TTACAAGGAA 421 AGCAATCCCG TCCACAACAT CGCATCTTGC TTATAAGTTT TTGCAGTGAG TATATGTAAA 481 TATATGTGTA TAGTCATTTT TCCTTTTACA AAATACATAG TAATATTTTA GTACAAGGAT 541 TGTAGTTTAT TACTAAATTG ATATTGTAAT GTCAAATTTG GAACTAATGA AGCCAAAGTT 601 TATATCAACT CCGTCTAACA GAGTATCTTT GAGAAAAAAA AGTTAAATCA CGTGA Predicted gene structure (within gDNA segment 45609 to 43584): Exon 1 44806 44194 ( 613 n); cDNA 24 655 ( 632 n); score: 0.907 MATCH C08HBa0320P23.1- SGN-E392507+ 0.907 613 0.936 C PGS_C08HBa0320P23.1-_SGN-E392507+ (44806 44194) Alignment (genomic DNA sequence = upper lines): GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC T-CCATCTCC AGGTATACCT 44748 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC TCCCATCTCC AGGTATACCT 83 CAAAACTTAT CCTATTTTTG TTTTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 44688 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAACTTAT CCTATTTTTG T-TTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 142 TCTATGCTAC TGTAATTTGA TTATGAATTA TCTA-GCATT GGAACAAAAA TGATTTGCTA 44629 |||||||||| |||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| TCTATGCTAC TGTAATTTGA TCATGAATTA TCTAGGCATT GGAACAAAAA TGATTTGCTA 202 ATATTACTCT GATAAAATTA TATTCTTTTT C-------T- -GGCAGAAGT TCACAATGTT 44578 |||||||||| |||||||||| |||||||||| | | |||| |||| |||||||||| ATATTACTCT GATAAAATTA TATTCTTTTT CTTAGAAATA GGGCAAAAGT TCACAATGTT 262 TTGCCAAGTT CTTTCTATTG GAAGTGTGTC AGTTTTTATG G---A----- -ATATTCGCA 44527 |||||||||| |||||||| | |||||||||| |||||||||| | | ||||||||| TTGCCAAGTT CTTTCTATCG GAAGTGTGTC AGTTTTTATG GAATATTTTT TATATTCGCA 322 CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 44467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 382 TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGATAG CAATCCCGTC CACAACATCG 44407 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGAAAG CAATCCCGTC CACAACATCG 442 CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 44347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 502 CTTTTACAAA ATACATAGTA ATATTTTAGT ATAAGGATTG TAGTTTATTA CTAAATTGAT 44287 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CTTTTACAAA ATACATAGTA ATATTTTAGT ACAAGGATTG TAGTTTATTA CTAAATTGAT 562 ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAACTCC GTCTAACAGA 44227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAACTCC GTCTAACAGA 622 GTATCTTTGA GAAGAAAAAG TTAAATCACG TGA 44194 |||||||||| ||| |||||| |||||||||| ||| GTATCTTTGA GAAAAAAAAG TTAAATCACG TGA 655 hqPGS_C08HBa0320P23.1-_SGN-E392507+ (44806 44194) ******************************************************************************** EST sequence 118 +strand 608 n (File: SGN-E236391+) 1 AGCCGCCTCT GTAAAGCTAT ACGCAGAAGT CCCATCACAT CATCCTCTTT GCGAGCAAAA 61 ACTCCCATCT CCAGGTATAC CTCAAAACTT ATCCTATTTT TGTTTCCTTT TTTCTGGTTG 121 TAATTTCAAC CTTTTCTTCC TTCTATGCTA CTGTAATTTG ATCATGAATT ATCTAGGCAT 181 TGGAACAAAA ATGATTTGCT AATATTACTC TGATAAAATT ATATTCTTTT TCTTAGAAAT 241 AGGGCAAAAG TTCACAATGT TTTGCCAAGT TCTTTCTATC GGAAGTGTGT CAGTTTTTAT 301 GGAATATTTT TTATATTCGC ACTGAAGCCC AGTTATATAT GGACTCATAC ATAATAAGGC 361 TCCATTGGTA CGGAAGTACT CTACCAAAGA TTTGAACCAA GACCTCTGTT TACAAGGAAA 421 GCAATCCCGT CCACAACATC GCATCTTGCT TATAAGTTTT TGCAGTGAGT ATATGTAAAT 481 ATATGTGTAT AGTCATTTTT CCTTTTACAA AATACATAGT AATATTTTAG TACAAGGATT 541 GTAGTTTATT ACTAAATTGA TATTGTAATG TCAAATTTGG AACTAATGAA GCCAAAGTTT 601 ATATCAAC Predicted gene structure (within gDNA segment 45599 to 43630): Exon 1 44806 44240 ( 567 n); cDNA 23 608 ( 586 n); score: 0.901 MATCH C08HBa0320P23.1- SGN-E236391+ 0.901 567 0.933 C PGS_C08HBa0320P23.1-_SGN-E236391+ (44806 44240) Alignment (genomic DNA sequence = upper lines): GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC T-CCATCTCC AGGTATACCT 44748 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC TCCCATCTCC AGGTATACCT 82 CAAAACTTAT CCTATTTTTG TTTTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 44688 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAACTTAT CCTATTTTTG T-TTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 141 TCTATGCTAC TGTAATTTGA TTATGAATTA TCTA-GCATT GGAACAAAAA TGATTTGCTA 44629 |||||||||| |||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| TCTATGCTAC TGTAATTTGA TCATGAATTA TCTAGGCATT GGAACAAAAA TGATTTGCTA 201 ATATTACTCT GATAAAATTA TATTCTTTTT C-------T- -GGCAGAAGT TCACAATGTT 44578 |||||||||| |||||||||| |||||||||| | | |||| |||| |||||||||| ATATTACTCT GATAAAATTA TATTCTTTTT CTTAGAAATA GGGCAAAAGT TCACAATGTT 261 TTGCCAAGTT CTTTCTATTG GAAGTGTGTC AGTTTTTATG G---A----- -ATATTCGCA 44527 |||||||||| |||||||| | |||||||||| |||||||||| | | ||||||||| TTGCCAAGTT CTTTCTATCG GAAGTGTGTC AGTTTTTATG GAATATTTTT TATATTCGCA 321 CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 44467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 381 TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGATAG CAATCCCGTC CACAACATCG 44407 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGAAAG CAATCCCGTC CACAACATCG 441 CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 44347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 501 CTTTTACAAA ATACATAGTA ATATTTTAGT ATAAGGATTG TAGTTTATTA CTAAATTGAT 44287 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CTTTTACAAA ATACATAGTA ATATTTTAGT ACAAGGATTG TAGTTTATTA CTAAATTGAT 561 ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAAC 44240 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAAC 608 hqPGS_C08HBa0320P23.1-_SGN-E236391+ (44806 44240) ******************************************************************************** EST sequence 132 +strand 537 n (File: SGN-E237964+) 1 AGCCGCCTTT GTAAAGCTAT ACGCAGAAGT CCCATCACAT CATCCTCTTT GCGAGCAAAA 61 ACTCCCATCT CCAGGTATAC CTCAAAACTT ATCCTATTTT TGTTTCCTTT TTTCTGGTTG 121 TAATTTCAAC CTTTTCTTCC TTCTATGCTA CTGTAATTTG ATCATGAATT ATCTAGGCAT 181 TGGAACAAAA ATGATTTGCT AATATTACTC TGATAAAATT ATATTCTTTT TCTTAGAAAT 241 AGGGCAAAAG TTCACAATGT TTTGCCAAGT TCTTTCTATC GGAAGTGTGT CAGTTTTTAT 301 GGAATATTTT TTATATTCGC ACTGAAGCCC AGTTATATAT GGACTCATAC ATAATAAGGC 361 TCCATTGGTA CGGAAGTACT CTACCAAAGA TTTGAACCAA GACCCCTGTT TACAAGGAAA 421 GCAATCCCGT CCACAACATC GCATCTTGCT TATAAGTTTT TGCCGTGAGT ATATGTAAAT 481 ATATGTGTAT AGGCATTTTT TCTTTTACAA AATACATAGT AATATTTTAG TACAAGG Predicted gene structure (within gDNA segment 45599 to 43656): Exon 1 44806 44311 ( 496 n); cDNA 23 537 ( 515 n); score: 0.879 MATCH C08HBa0320P23.1- SGN-E237964+ 0.879 496 0.924 C PGS_C08HBa0320P23.1-_SGN-E237964+ (44806 44311) Alignment (genomic DNA sequence = upper lines): GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC T-CCATCTCC AGGTATACCT 44748 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC TCCCATCTCC AGGTATACCT 82 CAAAACTTAT CCTATTTTTG TTTTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 44688 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAACTTAT CCTATTTTTG T-TTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 141 TCTATGCTAC TGTAATTTGA TTATGAATTA TCTA-GCATT GGAACAAAAA TGATTTGCTA 44629 |||||||||| |||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| TCTATGCTAC TGTAATTTGA TCATGAATTA TCTAGGCATT GGAACAAAAA TGATTTGCTA 201 ATATTACTCT GATAAAATTA TATTCTTTTT C-------T- -GGCAGAAGT TCACAATGTT 44578 |||||||||| |||||||||| |||||||||| | | |||| |||| |||||||||| ATATTACTCT GATAAAATTA TATTCTTTTT CTTAGAAATA GGGCAAAAGT TCACAATGTT 261 TTGCCAAGTT CTTTCTATTG GAAGTGTGTC AGTTTTTATG G---A----- -ATATTCGCA 44527 |||||||||| |||||||| | |||||||||| |||||||||| | | ||||||||| TTGCCAAGTT CTTTCTATCG GAAGTGTGTC AGTTTTTATG GAATATTTTT TATATTCGCA 321 CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 44467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 381 TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGATAG CAATCCCGTC CACAACATCG 44407 |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| |||||||||| TACCAAAGAT TTGAACCAAG ACCCCTGTTT ACAAGGAAAG CAATCCCGTC CACAACATCG 441 CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 44347 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| | ||||||| CATCTTGCTT ATAAGTTTTT GCCGTGAGTA TATGTAAATA TATGTGTATA GGCATTTTTT 501 CTTTTACAAA ATACATAGTA ATATTTTAGT ATAAGG 44311 |||||||||| |||||||||| |||||||||| | |||| CTTTTACAAA ATACATAGTA ATATTTTAGT ACAAGG 537 hqPGS_C08HBa0320P23.1-_SGN-E237964+ (44806 44311) ******************************************************************************** EST sequence 70 +strand 414 n (File: SGN-E242513+) 1 AAGCTATACG CAGAAGTCCC ATCACATCAT CCTCTTTGCG AGCAAAAACT CCCATCTCCA 61 GGTATACCTC AAAACTTATC CTATTTTTGT TTCCTTTTTT CTGGTTGTAA TTTCAACCTT 121 TTCTTCCTTC TATGCTACTG TAATTTGATC ATGAATTATC TAGGCATTGG AACAAAAATG 181 ATTTGCTAAT ATTACTCTGA TAAAATTATA TTCTTTTTCT TAGAAATAGG GCAAAAGTTC 241 ACAATGTTTT GCCAAGTTCT TTCTATCGGA AGTGTGTCAG CTTTTATGGA ATATTTCTTA 301 TATGCGCACT GAAACCCGAG TATATATGGA CTCATACATA ATAAGGCTCC ATTGGTACGG 361 AAGTACTCTA CCAAAGAGTT GAACCAAGAC CTCTGTTTAC AAGGAAAGCA ATCC Predicted gene structure (within gDNA segment 45469 to 43730): Exon 1 44815 44421 ( 395 n); cDNA 1 414 ( 414 n); score: 0.838 MATCH C08HBa0320P23.1- SGN-E242513+ 0.838 395 0.954 C PGS_C08HBa0320P23.1-_SGN-E242513+ (44815 44421) Alignment (genomic DNA sequence = upper lines): AACGTCTACG CAGAAGTCCC ATCACATCAT CCTCTTTGCG AGCAAAAACT -CCATCTCCA 44757 || | |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGCTATACG CAGAAGTCCC ATCACATCAT CCTCTTTGCG AGCAAAAACT CCCATCTCCA 60 GGTATACCTC AAAACTTATC CTATTTTTGT TTTCCTTTTT TCTGGTTGTA ATTTCAACCT 44697 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| GGTATACCTC AAAACTTATC CTATTTTTGT T-TCCTTTTT TCTGGTTGTA ATTTCAACCT 119 TTTCTTCCTT CTATGCTACT GTAATTTGAT TATGAATTAT CTA-GCATTG GAACAAAAAT 44638 |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| TTTCTTCCTT CTATGCTACT GTAATTTGAT CATGAATTAT CTAGGCATTG GAACAAAAAT 179 GATTTGCTAA TATTACTCTG ATAAAATTAT ATTCTTTTTC -------T-- GGCAGAAGTT 44587 |||||||||| |||||||||| |||||||||| |||||||||| | |||| ||||| GATTTGCTAA TATTACTCTG ATAAAATTAT ATTCTTTTTC TTAGAAATAG GGCAAAAGTT 239 CACAATGTTT TGCCAAGTTC TTTCTATTGG AAGTGTGTCA GTTTTTATGG -A-A-----T 44534 |||||||||| |||||||||| ||||||| || |||||||||| | |||||||| | | | CACAATGTTT TGCCAAGTTC TTTCTATCGG AAGTGTGTCA GCTTTTATGG AATATTTCTT 299 AT-T-CGCAC TGAAGCCCAG TTATATATGG ACTCATACAT AATAAGGCTC CATTGGTACG 44476 || | ||||| |||| ||| ||||||||| |||||||||| |||||||||| |||||||||| ATATGCGCAC TGAAACCCGA GTATATATGG ACTCATACAT AATAAGGCTC CATTGGTACG 359 GAAGTACTCT ACCAAAGATT TGAACCAAGA CCTCTGTTTA CAAGGATAGC AATCC 44421 |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| ||||| GAAGTACTCT ACCAAAGAGT TGAACCAAGA CCTCTGTTTA CAAGGAAAGC AATCC 414 hqPGS_C08HBa0320P23.1-_SGN-E242513+ (44815 44421) ******************************************************************************** EST sequence 144 +strand 366 n (File: SGN-E239544+) 1 AGCCGCCTCT GTAAAGCTAT ACGCAGAAGT CCCATCACAT CATCCTCTTT GCGAGCAAAA 61 ACTCCCATCT CCAGGTATAC CTCAAAACTT ATCCTATTTT TGTTTCCTTT TTTCTGGTTG 121 TAATTTCAAC CTTTTCTTCC TTCTATGCTA CTGTAATTTG ATCATGAATT ATCTAGGCAT 181 TGGAACAAAA ATGATTTGCT AATATTACTC TGATAAAATT ATATTCTTTT TCTTAGAAAT 241 AGGGCAAAAG TTCACAATGT TTTGCCAAGT TCTTTCTATC GGAAGTGTGT CAGTTTTTAT 301 GGAATATTTT TTATATTCGC ACTGAAGCCC AGTTATATAT GGACTCATAC ATAATAAGGC 361 TCCATT Predicted gene structure (within gDNA segment 45599 to 43872): Exon 1 44806 44531 ( 276 n); cDNA 23 308 ( 286 n); score: 0.886 MATCH C08HBa0320P23.1- SGN-E239544+ 0.886 276 0.754 C PGS_C08HBa0320P23.1-_SGN-E239544+ (44806 44531) Alignment (genomic DNA sequence = upper lines): GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC T-CCATCTCC AGGTATACCT 44748 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC TCCCATCTCC AGGTATACCT 82 CAAAACTTAT CCTATTTTTG TTTTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 44688 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAACTTAT CCTATTTTTG T-TTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 141 TCTATGCTAC TGTAATTTGA TTATGAATTA TCTA-GCATT GGAACAAAAA TGATTTGCTA 44629 |||||||||| |||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| TCTATGCTAC TGTAATTTGA TCATGAATTA TCTAGGCATT GGAACAAAAA TGATTTGCTA 201 ATATTACTCT GATAAAATTA TATTCTTTTT C-------T- -GGCAGAAGT TCACAATGTT 44578 |||||||||| |||||||||| |||||||||| | | |||| |||| |||||||||| ATATTACTCT GATAAAATTA TATTCTTTTT CTTAGAAATA GGGCAAAAGT TCACAATGTT 261 TTGCCAAGTT CTTTCTATTG GAAGTGTGTC AGTTTTTATG GAATATT 44531 |||||||||| |||||||| | |||||||||| |||||||||| ||||||| TTGCCAAGTT CTTTCTATCG GAAGTGTGTC AGTTTTTATG GAATATT 308 hqPGS_C08HBa0320P23.1-_SGN-E239544+ (44806 44531) ******************************************************************************** EST sequence 105 +strand 613 n (File: SGN-E241748+) 1 AGGAGAGGAT ATCTCGTTCT CCCTGAGCAT GTATTAAGGT ACTATAGAGA TGCTGGAGCA 61 AAACCATTAT GGCCAACGTC AAGTGGCCAA CCATCAAAAG CTGACATCCC TAAGTGCACC 121 TATTGTGGCG ATCATAGGGC TTTTGAATTT CAGGTTTTAC CACAAATACT CTATTATTTT 181 GGTGTGGAAA ATGATGTGCA TTCTCTTGAT TGGGCTACTA TTGCTGTGTA CACCTGTGAA 241 TCCTCGTGCG ATGGACATAT AGCTTACAAG GAGGAATTTG CTTGGGTTCA AATTGCATCT 301 CAATCAAGCA CAACCCAGAG ATGAGACGCG TAAAGCATGG TTTGAAACAA GATTGATAAT 361 GGACCGCACT CTACCCTTCA CTTAAATACC AGACTTCTGG TTTGCCGTGA GATTCAACTC 421 ATGATGTGCA CTTAACCTGC ACAACATGCC TCGCGCTAAA ATTTTGTTTT CCTTTATATT 481 AATTTTTCTC AGATCATTTT TAGTTTTCCT GGTTAATTTG CAAACGTTTC ACATTACAAC 541 GTCAGTAGTG AATATTTTGT TGTAATAGTA TGTTTTTCTC ATCAATCGAG GTGTTCAGCG 601 TAAAANANAA AAA Predicted gene structure (within gDNA segment 46853 to 44473): Exon 1 46081 46045 ( 37 n); cDNA 1 38 ( 38 n); score: 0.878 Intron 1 46044 45892 ( 153 n); Pd: 0.970 (s: 0), Pa: 0.989 (s: 1.00) Exon 2 45891 45777 ( 115 n); cDNA 39 153 ( 115 n); score: 1.000 Intron 2 45776 45615 ( 162 n); Pd: 0.859 (s: 1.00), Pa: 0.143 (s: 1.00) Exon 3 45614 45163 ( 452 n); cDNA 154 605 ( 452 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E241748+ 1.000 604 0.985 C PGS_C08HBa0320P23.1-_SGN-E241748+ (46081 46045,45891 45777,45614 45163) Alignment (genomic DNA sequence = upper lines): AGGAGAGGAT ATCTCGTAC- CCCTGAGCAA GTATTAAGGT GATTGAAGTA CTTGCGCCTT 46023 |||||||||| ||||||| | ||||||||| |||||||| AGGAGAGGAT ATCTCGTTCT CCCTGAGCAT GTATTAAG.. .......... .......... 38 TTTTCTACTA TATTAATCTT GAAAAACACT ATGCGTGCAT AGATAAATGA CAGCCGCCAC 45963 .......... .......... .......... .......... .......... .......... 38 CTTCTTTGCT ATTCCCAAAG AATTATGATC ACATGACTTG TCACTGAGTT CGATCATTAT 45903 .......... .......... .......... .......... .......... .......... 38 CTTGGAAATA GGTACTATAG AGATGCTGGA GCAAAACCAT TATGGCCAAC GTCAAGTGGC 45843 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTACTATAG AGATGCTGGA GCAAAACCAT TATGGCCAAC GTCAAGTGGC 87 CAACCATCAA AAGCTGACAT CCCTAAGTGC ACCTATTGTG GCGATCATAG GGCTTTTGAA 45783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCATCAA AAGCTGACAT CCCTAAGTGC ACCTATTGTG GCGATCATAG GGCTTTTGAA 147 TTTCAGGTAT AATGAAGCTT TTGCTTTGCT TACAAGTCAA CTAGTGGTGA TTCTCAAACT 45723 |||||| TTTCAG.... .......... .......... .......... .......... .......... 153 ACTAAAAGCA GTTGTATGTC TCTGGCTGTC TTGTAGAAAT TGTAGCTTAA GTTGTTGGTT 45663 .......... .......... .......... .......... .......... .......... 153 GCCTGAAAAG TATTTTCAAT CCATGCTCTT TTTTTCTGCC GCTTCCAGGT TTTACCACAA 45603 || |||||||||| .......... .......... .......... .......... ........GT TTTACCACAA 165 ATACTCTATT ATTTTGGTGT GGAAAATGAT GTGCATTCTC TTGATTGGGC TACTATTGCT 45543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTCTATT ATTTTGGTGT GGAAAATGAT GTGCATTCTC TTGATTGGGC TACTATTGCT 225 GTGTACACCT GTGAATCCTC GTGCGATGGA CATATAGCTT ACAAGGAGGA ATTTGCTTGG 45483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTACACCT GTGAATCCTC GTGCGATGGA CATATAGCTT ACAAGGAGGA ATTTGCTTGG 285 GTTCAAATTG CATCTCAATC AAGCACAACC CAGAGATGAG ACGCGTAAAG CATGGTTTGA 45423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAATTG CATCTCAATC AAGCACAACC CAGAGATGAG ACGCGTAAAG CATGGTTTGA 345 AACAAGATTG ATAATGGACC GCACTCTACC CTTCACTTAA ATACCAGACT TCTGGTTTGC 45363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGATTG ATAATGGACC GCACTCTACC CTTCACTTAA ATACCAGACT TCTGGTTTGC 405 CGTGAGATTC AACTCATGAT GTGCACTTAA CCTGCACAAC ATGCCTCGCG CTAAAATTTT 45303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGAGATTC AACTCATGAT GTGCACTTAA CCTGCACAAC ATGCCTCGCG CTAAAATTTT 465 GTTTTCCTTT ATATTAATTT TTCTCAGATC ATTTTTAGTT TTCCTGGTTA ATTTGCAAAC 45243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCCTTT ATATTAATTT TTCTCAGATC ATTTTTAGTT TTCCTGGTTA ATTTGCAAAC 525 GTTTCACATT ACAACGTCAG TAGTGAATAT TTTGTTGTAA TAGTATGTTT TTCTCATCAA 45183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCACATT ACAACGTCAG TAGTGAATAT TTTGTTGTAA TAGTATGTTT TTCTCATCAA 585 TCGAGGTGTT CAGCGTAAAA 45163 |||||||||| |||||||||| TCGAGGTGTT CAGCGTAAAA 605 hqPGS_C08HBa0320P23.1-_SGN-E241748+ (46081 46045,45891 45777,45614 45163) ******************************************************************************** EST sequence 117 +strand 569 n (File: SGN-E274861+) 1 GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 61 AAGCAAAGCT GGGGGTACTC CGGCTTGGTT GGATCCAATA AACTTGCCAA CAGGAAAATC 121 CTGTCTTTGC GATATCTGTG GCGAGCCTTT GCAGTTCATG CTTCAGGTTT ACGCACCACT 181 CACGGAGAAG GATTCGACTT TTCATCGCAC CTTATTTCTC TTCATGTGTA CATCAATGAC 241 CTGTCTCCTT AAAGATCAAC ATGAGCAGTG GAAAAGGAAC CAAGACAAGC AATCCAGGAG 301 TGTCAAGGTC TTTCGTTGCC AATTGCCCCG TGATAACTCT TTTTACTCCA GTGAACCCCC 361 AAGAAACAAT GGGAAAGATA AACCTTCTAG TCCTGGAGCT GTTCTCTGTG GCTGGTGTGG 421 TACATGGAAA GGAGATAAAG TCTGTGGTGG TTGCCGAAGA GTACACTACT GCTCGGAGAA 481 ACATCAGACT GTTCATTGGA AATCAGGTCA TAAACAACGC TGCTTACCCT CAAGCATTTC 541 TCAGGATGCA TCTGAACCTA GTAATAGTA Predicted gene structure (within gDNA segment 50068 to 45890): Exon 1 49468 49387 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 49386 49274 ( 113 n); Pd: 0.236 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 49273 49190 ( 84 n); cDNA 83 166 ( 84 n); score: 1.000 Intron 2 49189 47269 (1921 n); Pd: 0.991 (s: 1.00), Pa: 0.835 (s: 1.00) Exon 3 47268 47135 ( 134 n); cDNA 167 300 ( 134 n); score: 1.000 Intron 3 47134 47041 ( 94 n); Pd: 0.974 (s: 1.00), Pa: 0.217 (s: 1.00) Exon 4 47040 46943 ( 98 n); cDNA 301 398 ( 98 n); score: 1.000 Intron 4 46942 46746 ( 197 n); Pd: 0.949 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 46745 46657 ( 89 n); cDNA 399 487 ( 89 n); score: 1.000 Intron 5 46656 46582 ( 75 n); Pd: 0.958 (s: 1.00), Pa: 0.908 (s: 1.00) Exon 6 46581 46500 ( 82 n); cDNA 488 569 ( 82 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E274861+ 1.000 569 1.000 C PGS_C08HBa0320P23.1-_SGN-E274861+ (49468 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) Alignment (genomic DNA sequence = upper lines): GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 49409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 60 AAGCAAAGCT GGGGGTACTC CGGTATGGTT AGAAAAGTTC TCTCGTTGAG TCGTTTCCGC 49349 |||||||||| |||||||||| || AAGCAAAGCT GGGGGTACTC CG........ .......... .......... .......... 82 TATCTTCCAT ATTCATTAGG GTGAAAGACG CCTCCAAGGT TGATTGAGTT TTAAATTTTG 49289 .......... .......... .......... .......... .......... .......... 82 TTTCTGTGAA TGTAGGCTTG GTTGGATCCA ATAAACTTGC CAACAGGAAA ATCCTGTCTT 49229 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCTTG GTTGGATCCA ATAAACTTGC CAACAGGAAA ATCCTGTCTT 127 TGCGATATCT GTGGCGAGCC TTTGCAGTTC ATGCTTCAGG TATATCTTTA TGTTCTCGTG 49169 |||||||||| |||||||||| |||||||||| ||||||||| TGCGATATCT GTGGCGAGCC TTTGCAGTTC ATGCTTCAG. .......... .......... 166 GAAGTTACAA TTTTAGCTGC ACGTTGTATC TTACATATCC TTTAGCCTAA CAACAACAGA 49109 .......... .......... .......... .......... .......... .......... 166 TGCAGTGTAG GTAGCCTCAC AAAGTGGGGT CTGGGGATCC TTTAGCCTAC TAATTGGAAA 49049 .......... .......... .......... .......... .......... .......... 166 ACATTGTCTG ATACAAAATG AAGTTAGAAG TGAAGTCTTT TTAAGTTTAG GGAATAATAT 48989 .......... .......... .......... .......... .......... .......... 166 TGATAATTCT AGGAATATAT TTCATTATTT CATGTCATAA TATGCTTAAA CAATGAAGGA 48929 .......... .......... .......... .......... .......... .......... 166 ACTACCCAAA TAACCAGTTA ATGTTACTGA AGCTAAAAGT AATTATGGTT TTAGCTTGTA 48869 .......... .......... .......... .......... .......... .......... 166 ACTTTTTGGA GGTGGCCAGC AATACCCTTA ATGCTGAAGA ATACAACTTT AACGGTATCA 48809 .......... .......... .......... .......... .......... .......... 166 AAAAAAAAAA ACGTCTCGAT CTAATTTACA AAAGACAACA TTTCCAATCT AACTTGACTT 48749 .......... .......... .......... .......... .......... .......... 166 TTATACAGCA TAAAAGTCTA AATCTAACTG TACAATATAC AACATAAGAG GAGATGTGGT 48689 .......... .......... .......... .......... .......... .......... 166 TCTTTTTTCT TATTATCCTC TTGGAGTTGG TCAATGGAAC TTTAGCTCTT CTGTAGGTTT 48629 .......... .......... .......... .......... .......... .......... 166 AGGATTTAAT TGTTAATGAC TTCTGAATAT ATTTCTCCTA TCTAAGTTTA AGTCTATCAA 48569 .......... .......... .......... .......... .......... .......... 166 TGTTTCTCCC ATTGCATGTT TCTTTCAACT AGATGGTCTA CCAAATGGCT TGAGCTTATA 48509 .......... .......... .......... .......... .......... .......... 166 GTGCGAAAAA TTAGGGCCAT GTAGATACTA GTACAACGCC TCTTCTTTTG AGAATTCTCG 48449 .......... .......... .......... .......... .......... .......... 166 TATAAGCCCC AACCCCCTTT CTGTTCCAGC AGTGCAGCAG CTTTGTAATG TAGATATGCA 48389 .......... .......... .......... .......... .......... .......... 166 TGATCCAATG CCTGAAATTT TATAATACAT GCTCCATAAT TGACTTGTGA CCCTGCAATG 48329 .......... .......... .......... .......... .......... .......... 166 GAAAAAGAAG AAACTATATT CTTTGATCGC TCCACACAAT GGACACCTTC TGCAAAGCTG 48269 .......... .......... .......... .......... .......... .......... 166 AAATCCCCCT GTTTGAAGGT TTATTTGAGT GAGAAAGCTT CCCTAATCAA AATCCAAGAA 48209 .......... .......... .......... .......... .......... .......... 166 AAGCAAGAGA CCTTCAAAGG AGCTCTAATC TATTGAACCA AATCTTCCAA GCCCATATAT 48149 .......... .......... .......... .......... .......... .......... 166 CCTTCTTGTA ACTTGTTAGA TTCCATCATA GTGTAGCAAC TTTTGACTGA ATAAAGTCCT 48089 .......... .......... .......... .......... .......... .......... 166 TTGGAGTGTC TCATCCAACT GATGGAGTTA ACTTTGTTGT GATCCAAAAC TACACTGTTT 48029 .......... .......... .......... .......... .......... .......... 166 AGCATCTGAA GCAAAAAGCC TAAGCTTTCT ACTTCCCAGT CATTCAAACT CCTTCCCAGA 47969 .......... .......... .......... .......... .......... .......... 166 AAGAGATTCC AACCTTTTGC TAAATTAAAT TTTGTAATTT TCTTTCCATT GTGTTGTGGG 47909 .......... .......... .......... .......... .......... .......... 166 GGGATAAACT GTATATGTCC AAGAATTGGT CTTTAAGCAG ATGTAGCCTT ACCATTTTTT 47849 .......... .......... .......... .......... .......... .......... 166 TTGCCAAAAT CTGATTCTCT TTCCATTACT GGGAAGAGAA ACCGATATTT GTTTCAAATT 47789 .......... .......... .......... .......... .......... .......... 166 TTCTCCAATA TCCTCGAACG TTATTTCCAT AATCCTGTTC AATGAGGTGC TTAAGAGATT 47729 .......... .......... .......... .......... .......... .......... 166 TTGGTGTACC GTGGGTTCTC TAAAGTGAAC TTCTCCAACC AAGGTTCTCT TCCAAAGTGC 47669 .......... .......... .......... .......... .......... .......... 166 ATTTTCCTCA ATATTGCATC TCCAAAGCCA TTTCATCAAG AGGCATTTGT TATGACTTTT 47609 .......... .......... .......... .......... .......... .......... 166 AGGTTTTTGA TTCTCAGTCA CCCATTCCTT TTGTCTCTGG TCACTGTTTT CCAATAATCC 47549 .......... .......... .......... .......... .......... .......... 166 AATTTACAAG GAATGCTAAA GTTGTTTGTT TATCGTCGTG CAAAAGAAAG TCGTCTCCTT 47489 .......... .......... .......... .......... .......... .......... 166 AAGTTGTCCA GGCGCTTCAC CTTGATTAGT TCATTTGCTG CCTATTTTTC AATAATGTAT 47429 .......... .......... .......... .......... .......... .......... 166 TAGTTATTTC TGCATCATAT GGGCTCTACA TCTACTTGTG TGCAGGGTTC CTTTTCTACC 47369 .......... .......... .......... .......... .......... .......... 166 ATTTGTCCTC TTTTTTGTTT TTCCCGGTGT GGCAAAAGAA GAGTGGAAAG AGGAAACTGA 47309 .......... .......... .......... .......... .......... .......... 166 ATCGTTGTGT TTCCTTTTTG TTTTTTTACT CATTGTTAAG GTTTACGCAC CACTCACGGA 47249 |||||||||| |||||||||| .......... .......... .......... .......... GTTTACGCAC CACTCACGGA 186 GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 47189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 246 CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAGGTACTT 47129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAG...... 300 CGTCATAATT GAATTTCGTT GTGTGACTAT AAACTACCAT GCTTAGTATC CGTTCATCTA 47069 .......... .......... .......... .......... .......... .......... 300 ACTCTGATTA CTGAATGTGT TTTTCAAGTG TCAAGGTCTT TCGTTGCCAA TTGCCCCGTG 47009 || |||||||||| |||||||||| |||||||||| .......... .......... ........TG TCAAGGTCTT TCGTTGCCAA TTGCCCCGTG 332 ATAACTCTTT TTACTCCAGT GAACCCCCAA GAAACAATGG GAAAGATAAA CCTTCTAGTC 46949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTCTTT TTACTCCAGT GAACCCCCAA GAAACAATGG GAAAGATAAA CCTTCTAGTC 392 CTGGAGGTAA TTCCTTGGAA GGATCTACTT TTTTCATTGG TCAATGACTC AAGTTTACAA 46889 |||||| CTGGAG.... .......... .......... .......... .......... .......... 398 TTGATTTGAT TAAGTATTTG CGATTATCTA TCAAAGTCGT TGGCCTTTCC TTTTCTTTCA 46829 .......... .......... .......... .......... .......... .......... 398 ACTCCATATT AATTGATCAC CCAAAATATT TACACATAAA TTTCCTGTAT TTTTTGTAAT 46769 .......... .......... .......... .......... .......... .......... 398 ACGTCTTGTC TTTCATTTCT CAGCTGTTCT CTGTGGCTGG TGTGGTACAT GGAAAGGAGA 46709 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CTGTTCT CTGTGGCTGG TGTGGTACAT GGAAAGGAGA 435 TAAAGTCTGT GGTGGTTGCC GAAGAGTACA CTACTGCTCG GAGAAACATC AGGTCAGCAA 46649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TAAAGTCTGT GGTGGTTGCC GAAGAGTACA CTACTGCTCG GAGAAACATC AG........ 487 CGTGTACCAT GCTTTGTTTG CTCCTTCCTG TTTGGACGGA ATTTTCCTAA CTGAATCCAA 46589 .......... .......... .......... .......... .......... .......... 487 TTTGCAGACT GTTCATTGGA AATCAGGTCA TAAACAACGC TGCTTACCCT CAAGCATTTC 46529 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ACT GTTCATTGGA AATCAGGTCA TAAACAACGC TGCTTACCCT CAAGCATTTC 540 TCAGGATGCA TCTGAACCTA GTAATAGTA 46500 |||||||||| |||||||||| ||||||||| TCAGGATGCA TCTGAACCTA GTAATAGTA 569 hqPGS_C08HBa0320P23.1-_SGN-E274861+ (49468 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) ******************************************************************************** EST sequence 120 +strand 474 n (File: SGN-E276752+) 1 GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 61 AAGCAAAGCT GGGGGTACTC CGGCTTGGTT GGATCCAATA AACTTGCCAA CAGGAAAATC 121 CTGTCTTTGC GATATCTGTG GCGAGCCTTT GCAGTTCATG CTTCAGGTTT ACGCACCACT 181 CACGGAGAAG GATTCGACTT TTCATCGCAC CTTATTTCTC TTCATGTGTA CATCAATGAC 241 CTGTCTCCTT AAAGATCAAC ATGAGCAGTG GAAAAGGAAC CAAGACAAGC AATCCAGGAG 301 TGTCAAGGTC TTTCGTTGCC AATTGCCCCG TGATAACTCT TTTTACTCCA GTGAACCCCC 361 AAGAAACAAT GGGAAAGATA AACCTTCTAG TCCTGGAGCT GTTCTCTGTG GCTGGTGTGG 421 TACATGGAAA GGAGATAAAG TCTGTGGTGG TTGCCGAAGA GTACACTACT GCTC Predicted gene structure (within gDNA segment 50068 to 46060): Exon 1 49468 49387 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 49386 49274 ( 113 n); Pd: 0.236 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 49273 49190 ( 84 n); cDNA 83 166 ( 84 n); score: 1.000 Intron 2 49189 47269 (1921 n); Pd: 0.991 (s: 1.00), Pa: 0.835 (s: 1.00) Exon 3 47268 47135 ( 134 n); cDNA 167 300 ( 134 n); score: 1.000 Intron 3 47134 47041 ( 94 n); Pd: 0.974 (s: 1.00), Pa: 0.217 (s: 1.00) Exon 4 47040 46943 ( 98 n); cDNA 301 398 ( 98 n); score: 1.000 Intron 4 46942 46746 ( 197 n); Pd: 0.949 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 46745 46670 ( 76 n); cDNA 399 474 ( 76 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E276752+ 1.000 474 1.000 C PGS_C08HBa0320P23.1-_SGN-E276752+ (49468 49387,49273 49190,47268 47135,47040 46943,46745 46670) Alignment (genomic DNA sequence = upper lines): GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 49409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTAGGG GTTCTTGAAA AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATTTCC 60 AAGCAAAGCT GGGGGTACTC CGGTATGGTT AGAAAAGTTC TCTCGTTGAG TCGTTTCCGC 49349 |||||||||| |||||||||| || AAGCAAAGCT GGGGGTACTC CG........ .......... .......... .......... 82 TATCTTCCAT ATTCATTAGG GTGAAAGACG CCTCCAAGGT TGATTGAGTT TTAAATTTTG 49289 .......... .......... .......... .......... .......... .......... 82 TTTCTGTGAA TGTAGGCTTG GTTGGATCCA ATAAACTTGC CAACAGGAAA ATCCTGTCTT 49229 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCTTG GTTGGATCCA ATAAACTTGC CAACAGGAAA ATCCTGTCTT 127 TGCGATATCT GTGGCGAGCC TTTGCAGTTC ATGCTTCAGG TATATCTTTA TGTTCTCGTG 49169 |||||||||| |||||||||| |||||||||| ||||||||| TGCGATATCT GTGGCGAGCC TTTGCAGTTC ATGCTTCAG. .......... .......... 166 GAAGTTACAA TTTTAGCTGC ACGTTGTATC TTACATATCC TTTAGCCTAA CAACAACAGA 49109 .......... .......... .......... .......... .......... .......... 166 TGCAGTGTAG GTAGCCTCAC AAAGTGGGGT CTGGGGATCC TTTAGCCTAC TAATTGGAAA 49049 .......... .......... .......... .......... .......... .......... 166 ACATTGTCTG ATACAAAATG AAGTTAGAAG TGAAGTCTTT TTAAGTTTAG GGAATAATAT 48989 .......... .......... .......... .......... .......... .......... 166 TGATAATTCT AGGAATATAT TTCATTATTT CATGTCATAA TATGCTTAAA CAATGAAGGA 48929 .......... .......... .......... .......... .......... .......... 166 ACTACCCAAA TAACCAGTTA ATGTTACTGA AGCTAAAAGT AATTATGGTT TTAGCTTGTA 48869 .......... .......... .......... .......... .......... .......... 166 ACTTTTTGGA GGTGGCCAGC AATACCCTTA ATGCTGAAGA ATACAACTTT AACGGTATCA 48809 .......... .......... .......... .......... .......... .......... 166 AAAAAAAAAA ACGTCTCGAT CTAATTTACA AAAGACAACA TTTCCAATCT AACTTGACTT 48749 .......... .......... .......... .......... .......... .......... 166 TTATACAGCA TAAAAGTCTA AATCTAACTG TACAATATAC AACATAAGAG GAGATGTGGT 48689 .......... .......... .......... .......... .......... .......... 166 TCTTTTTTCT TATTATCCTC TTGGAGTTGG TCAATGGAAC TTTAGCTCTT CTGTAGGTTT 48629 .......... .......... .......... .......... .......... .......... 166 AGGATTTAAT TGTTAATGAC TTCTGAATAT ATTTCTCCTA TCTAAGTTTA AGTCTATCAA 48569 .......... .......... .......... .......... .......... .......... 166 TGTTTCTCCC ATTGCATGTT TCTTTCAACT AGATGGTCTA CCAAATGGCT TGAGCTTATA 48509 .......... .......... .......... .......... .......... .......... 166 GTGCGAAAAA TTAGGGCCAT GTAGATACTA GTACAACGCC TCTTCTTTTG AGAATTCTCG 48449 .......... .......... .......... .......... .......... .......... 166 TATAAGCCCC AACCCCCTTT CTGTTCCAGC AGTGCAGCAG CTTTGTAATG TAGATATGCA 48389 .......... .......... .......... .......... .......... .......... 166 TGATCCAATG CCTGAAATTT TATAATACAT GCTCCATAAT TGACTTGTGA CCCTGCAATG 48329 .......... .......... .......... .......... .......... .......... 166 GAAAAAGAAG AAACTATATT CTTTGATCGC TCCACACAAT GGACACCTTC TGCAAAGCTG 48269 .......... .......... .......... .......... .......... .......... 166 AAATCCCCCT GTTTGAAGGT TTATTTGAGT GAGAAAGCTT CCCTAATCAA AATCCAAGAA 48209 .......... .......... .......... .......... .......... .......... 166 AAGCAAGAGA CCTTCAAAGG AGCTCTAATC TATTGAACCA AATCTTCCAA GCCCATATAT 48149 .......... .......... .......... .......... .......... .......... 166 CCTTCTTGTA ACTTGTTAGA TTCCATCATA GTGTAGCAAC TTTTGACTGA ATAAAGTCCT 48089 .......... .......... .......... .......... .......... .......... 166 TTGGAGTGTC TCATCCAACT GATGGAGTTA ACTTTGTTGT GATCCAAAAC TACACTGTTT 48029 .......... .......... .......... .......... .......... .......... 166 AGCATCTGAA GCAAAAAGCC TAAGCTTTCT ACTTCCCAGT CATTCAAACT CCTTCCCAGA 47969 .......... .......... .......... .......... .......... .......... 166 AAGAGATTCC AACCTTTTGC TAAATTAAAT TTTGTAATTT TCTTTCCATT GTGTTGTGGG 47909 .......... .......... .......... .......... .......... .......... 166 GGGATAAACT GTATATGTCC AAGAATTGGT CTTTAAGCAG ATGTAGCCTT ACCATTTTTT 47849 .......... .......... .......... .......... .......... .......... 166 TTGCCAAAAT CTGATTCTCT TTCCATTACT GGGAAGAGAA ACCGATATTT GTTTCAAATT 47789 .......... .......... .......... .......... .......... .......... 166 TTCTCCAATA TCCTCGAACG TTATTTCCAT AATCCTGTTC AATGAGGTGC TTAAGAGATT 47729 .......... .......... .......... .......... .......... .......... 166 TTGGTGTACC GTGGGTTCTC TAAAGTGAAC TTCTCCAACC AAGGTTCTCT TCCAAAGTGC 47669 .......... .......... .......... .......... .......... .......... 166 ATTTTCCTCA ATATTGCATC TCCAAAGCCA TTTCATCAAG AGGCATTTGT TATGACTTTT 47609 .......... .......... .......... .......... .......... .......... 166 AGGTTTTTGA TTCTCAGTCA CCCATTCCTT TTGTCTCTGG TCACTGTTTT CCAATAATCC 47549 .......... .......... .......... .......... .......... .......... 166 AATTTACAAG GAATGCTAAA GTTGTTTGTT TATCGTCGTG CAAAAGAAAG TCGTCTCCTT 47489 .......... .......... .......... .......... .......... .......... 166 AAGTTGTCCA GGCGCTTCAC CTTGATTAGT TCATTTGCTG CCTATTTTTC AATAATGTAT 47429 .......... .......... .......... .......... .......... .......... 166 TAGTTATTTC TGCATCATAT GGGCTCTACA TCTACTTGTG TGCAGGGTTC CTTTTCTACC 47369 .......... .......... .......... .......... .......... .......... 166 ATTTGTCCTC TTTTTTGTTT TTCCCGGTGT GGCAAAAGAA GAGTGGAAAG AGGAAACTGA 47309 .......... .......... .......... .......... .......... .......... 166 ATCGTTGTGT TTCCTTTTTG TTTTTTTACT CATTGTTAAG GTTTACGCAC CACTCACGGA 47249 |||||||||| |||||||||| .......... .......... .......... .......... GTTTACGCAC CACTCACGGA 186 GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 47189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 246 CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAGGTACTT 47129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAG...... 300 CGTCATAATT GAATTTCGTT GTGTGACTAT AAACTACCAT GCTTAGTATC CGTTCATCTA 47069 .......... .......... .......... .......... .......... .......... 300 ACTCTGATTA CTGAATGTGT TTTTCAAGTG TCAAGGTCTT TCGTTGCCAA TTGCCCCGTG 47009 || |||||||||| |||||||||| |||||||||| .......... .......... ........TG TCAAGGTCTT TCGTTGCCAA TTGCCCCGTG 332 ATAACTCTTT TTACTCCAGT GAACCCCCAA GAAACAATGG GAAAGATAAA CCTTCTAGTC 46949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTCTTT TTACTCCAGT GAACCCCCAA GAAACAATGG GAAAGATAAA CCTTCTAGTC 392 CTGGAGGTAA TTCCTTGGAA GGATCTACTT TTTTCATTGG TCAATGACTC AAGTTTACAA 46889 |||||| CTGGAG.... .......... .......... .......... .......... .......... 398 TTGATTTGAT TAAGTATTTG CGATTATCTA TCAAAGTCGT TGGCCTTTCC TTTTCTTTCA 46829 .......... .......... .......... .......... .......... .......... 398 ACTCCATATT AATTGATCAC CCAAAATATT TACACATAAA TTTCCTGTAT TTTTTGTAAT 46769 .......... .......... .......... .......... .......... .......... 398 ACGTCTTGTC TTTCATTTCT CAGCTGTTCT CTGTGGCTGG TGTGGTACAT GGAAAGGAGA 46709 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CTGTTCT CTGTGGCTGG TGTGGTACAT GGAAAGGAGA 435 TAAAGTCTGT GGTGGTTGCC GAAGAGTACA CTACTGCTC 46670 |||||||||| |||||||||| |||||||||| ||||||||| TAAAGTCTGT GGTGGTTGCC GAAGAGTACA CTACTGCTC 474 hqPGS_C08HBa0320P23.1-_SGN-E276752+ (49468 49387,49273 49190,47268 47135,47040 46943,46745 46670) ******************************************************************************** EST sequence 121 +strand 688 n (File: SGN-E345265+) 1 GTCTCAACAC TCGCTTAATC TCAGCTAAAT ATAATTCAAA GCTGTAAAGG AAACGAGAAA 61 ACATCTAATT TAGTTTAGCG AAAATGGAGG AAGAATTTAA TGCTGGAAGG ATCAAAGGCG 121 CTGCTAAGAG GACTTTGCAA ATTACACCTC TTGATGAGGA AGATCAAGAA GAGGTTCAAA 181 TTGATGACAG TGGAGATGTT GATTCGTATG ATGATGATGA TGAGACGGAG GAGGAGGATG 241 AAGACAAGGA ACCTGTGGGA TTAGGGGTTC TTGAAAAGCC TGAGAATTCA TGGTCACTGC 301 TACGTGAGTT ATTTCCAAGC AAAGCTGGGG GTACTCCGGC TTGGTTGGAT CCAATAAACT 361 TGCCAACAGG AAAATCCTGT CTTTGCGATA TCTGTGGCGA GCCTTTGCAG TTCATGCTTC 421 AGGTTTACGC ACCACTCACG GAGAAGGATT CGACTTTTCA TCGCACCTTA TTTCTCTTCA 481 TGTGTACATC AATGACCTGT CTCCTTAAAG ATCAACATGA GCAGTGGAAA AGGAACCAAG 541 ACAAGCAATC CAGGAGTGTC AAGGTCTTTC GTTGCCAATT GCCCCGTGAT AACTCTTTTT 601 ACTCCAGTGA ACCCCCAAGA AACAATGGGA AAGATAAACC TTCTAGTCCT GGAGCTGTTC 661 TCTGTGGCTG GTGTGGTACA TGGAAAGG Predicted gene structure (within gDNA segment 50631 to 46102): Exon 1 50031 49959 ( 73 n); cDNA 1 73 ( 73 n); score: 1.000 Intron 1 49958 49652 ( 307 n); Pd: 0.939 (s: 1.00), Pa: 0.532 (s: 1.00) Exon 2 49651 49387 ( 265 n); cDNA 74 338 ( 265 n); score: 1.000 Intron 2 49386 49274 ( 113 n); Pd: 0.236 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 49273 49190 ( 84 n); cDNA 339 422 ( 84 n); score: 1.000 Intron 3 49189 47269 (1921 n); Pd: 0.991 (s: 1.00), Pa: 0.835 (s: 1.00) Exon 4 47268 47135 ( 134 n); cDNA 423 556 ( 134 n); score: 1.000 Intron 4 47134 47041 ( 94 n); Pd: 0.974 (s: 1.00), Pa: 0.217 (s: 1.00) Exon 5 47040 46943 ( 98 n); cDNA 557 654 ( 98 n); score: 1.000 Intron 5 46942 46746 ( 197 n); Pd: 0.949 (s: 1.00), Pa: 0.997 (s: 0) Exon 6 46745 46712 ( 34 n); cDNA 655 688 ( 34 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E345265+ 1.000 688 1.000 C PGS_C08HBa0320P23.1-_SGN-E345265+ (50031 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46712) Alignment (genomic DNA sequence = upper lines): GTCTCAACAC TCGCTTAATC TCAGCTAAAT ATAATTCAAA GCTGTAAAGG AAACGAGAAA 49972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCAACAC TCGCTTAATC TCAGCTAAAT ATAATTCAAA GCTGTAAAGG AAACGAGAAA 60 ACATCTAATT TAGGTATTTT TCTCCTCTTA ATCGTTGTTT TTCAAAGCTT ATATGAGCTG 49912 |||||||||| ||| ACATCTAATT TAG....... .......... .......... .......... .......... 73 GTTCTCTGTA GAAAAGTAAG TCTTTTTGAT GGGAGTTCGT TATTTTCCCA GTTGGTTCTT 49852 .......... .......... .......... .......... .......... .......... 73 CAACATGAGG TCTTTTTAAC CCTTTATTTA CTTCTTTCAT CATGACATGA ACTGGGTCTC 49792 .......... .......... .......... .......... .......... .......... 73 CGTAAAAATC GAGTCTTGAT GGAGTTTTAG TATTTTGCTT GTTGTGAATT CCCTTAGTTT 49732 .......... .......... .......... .......... .......... .......... 73 CTTAATTGGC TCCTGAACAT GAGGTTGTGT GATTTTTCTG GGAAGTAATT GGTTTGTTTT 49672 .......... .......... .......... .......... .......... .......... 73 TCAATCATCA TTGTGGATAG TTTAGCGAAA ATGGAGGAAG AATTTAATGC TGGAAGGATC 49612 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TTTAGCGAAA ATGGAGGAAG AATTTAATGC TGGAAGGATC 113 AAAGGCGCTG CTAAGAGGAC TTTGCAAATT ACACCTCTTG ATGAGGAAGA TCAAGAAGAG 49552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCGCTG CTAAGAGGAC TTTGCAAATT ACACCTCTTG ATGAGGAAGA TCAAGAAGAG 173 GTTCAAATTG ATGACAGTGG AGATGTTGAT TCGTATGATG ATGATGATGA GACGGAGGAG 49492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAATTG ATGACAGTGG AGATGTTGAT TCGTATGATG ATGATGATGA GACGGAGGAG 233 GAGGATGAAG ACAAGGAACC TGTGGGATTA GGGGTTCTTG AAAAGCCTGA GAATTCATGG 49432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATGAAG ACAAGGAACC TGTGGGATTA GGGGTTCTTG AAAAGCCTGA GAATTCATGG 293 TCACTGCTAC GTGAGTTATT TCCAAGCAAA GCTGGGGGTA CTCCGGTATG GTTAGAAAAG 49372 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGCTAC GTGAGTTATT TCCAAGCAAA GCTGGGGGTA CTCCG..... .......... 338 TTCTCTCGTT GAGTCGTTTC CGCTATCTTC CATATTCATT AGGGTGAAAG ACGCCTCCAA 49312 .......... .......... .......... .......... .......... .......... 338 GGTTGATTGA GTTTTAAATT TTGTTTCTGT GAATGTAGGC TTGGTTGGAT CCAATAAACT 49252 || |||||||||| |||||||||| .......... .......... .......... ........GC TTGGTTGGAT CCAATAAACT 360 TGCCAACAGG AAAATCCTGT CTTTGCGATA TCTGTGGCGA GCCTTTGCAG TTCATGCTTC 49192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAACAGG AAAATCCTGT CTTTGCGATA TCTGTGGCGA GCCTTTGCAG TTCATGCTTC 420 AGGTATATCT TTATGTTCTC GTGGAAGTTA CAATTTTAGC TGCACGTTGT ATCTTACATA 49132 || AG........ .......... .......... .......... .......... .......... 422 TCCTTTAGCC TAACAACAAC AGATGCAGTG TAGGTAGCCT CACAAAGTGG GGTCTGGGGA 49072 .......... .......... .......... .......... .......... .......... 422 TCCTTTAGCC TACTAATTGG AAAACATTGT CTGATACAAA ATGAAGTTAG AAGTGAAGTC 49012 .......... .......... .......... .......... .......... .......... 422 TTTTTAAGTT TAGGGAATAA TATTGATAAT TCTAGGAATA TATTTCATTA TTTCATGTCA 48952 .......... .......... .......... .......... .......... .......... 422 TAATATGCTT AAACAATGAA GGAACTACCC AAATAACCAG TTAATGTTAC TGAAGCTAAA 48892 .......... .......... .......... .......... .......... .......... 422 AGTAATTATG GTTTTAGCTT GTAACTTTTT GGAGGTGGCC AGCAATACCC TTAATGCTGA 48832 .......... .......... .......... .......... .......... .......... 422 AGAATACAAC TTTAACGGTA TCAAAAAAAA AAAACGTCTC GATCTAATTT ACAAAAGACA 48772 .......... .......... .......... .......... .......... .......... 422 ACATTTCCAA TCTAACTTGA CTTTTATACA GCATAAAAGT CTAAATCTAA CTGTACAATA 48712 .......... .......... .......... .......... .......... .......... 422 TACAACATAA GAGGAGATGT GGTTCTTTTT TCTTATTATC CTCTTGGAGT TGGTCAATGG 48652 .......... .......... .......... .......... .......... .......... 422 AACTTTAGCT CTTCTGTAGG TTTAGGATTT AATTGTTAAT GACTTCTGAA TATATTTCTC 48592 .......... .......... .......... .......... .......... .......... 422 CTATCTAAGT TTAAGTCTAT CAATGTTTCT CCCATTGCAT GTTTCTTTCA ACTAGATGGT 48532 .......... .......... .......... .......... .......... .......... 422 CTACCAAATG GCTTGAGCTT ATAGTGCGAA AAATTAGGGC CATGTAGATA CTAGTACAAC 48472 .......... .......... .......... .......... .......... .......... 422 GCCTCTTCTT TTGAGAATTC TCGTATAAGC CCCAACCCCC TTTCTGTTCC AGCAGTGCAG 48412 .......... .......... .......... .......... .......... .......... 422 CAGCTTTGTA ATGTAGATAT GCATGATCCA ATGCCTGAAA TTTTATAATA CATGCTCCAT 48352 .......... .......... .......... .......... .......... .......... 422 AATTGACTTG TGACCCTGCA ATGGAAAAAG AAGAAACTAT ATTCTTTGAT CGCTCCACAC 48292 .......... .......... .......... .......... .......... .......... 422 AATGGACACC TTCTGCAAAG CTGAAATCCC CCTGTTTGAA GGTTTATTTG AGTGAGAAAG 48232 .......... .......... .......... .......... .......... .......... 422 CTTCCCTAAT CAAAATCCAA GAAAAGCAAG AGACCTTCAA AGGAGCTCTA ATCTATTGAA 48172 .......... .......... .......... .......... .......... .......... 422 CCAAATCTTC CAAGCCCATA TATCCTTCTT GTAACTTGTT AGATTCCATC ATAGTGTAGC 48112 .......... .......... .......... .......... .......... .......... 422 AACTTTTGAC TGAATAAAGT CCTTTGGAGT GTCTCATCCA ACTGATGGAG TTAACTTTGT 48052 .......... .......... .......... .......... .......... .......... 422 TGTGATCCAA AACTACACTG TTTAGCATCT GAAGCAAAAA GCCTAAGCTT TCTACTTCCC 47992 .......... .......... .......... .......... .......... .......... 422 AGTCATTCAA ACTCCTTCCC AGAAAGAGAT TCCAACCTTT TGCTAAATTA AATTTTGTAA 47932 .......... .......... .......... .......... .......... .......... 422 TTTTCTTTCC ATTGTGTTGT GGGGGGATAA ACTGTATATG TCCAAGAATT GGTCTTTAAG 47872 .......... .......... .......... .......... .......... .......... 422 CAGATGTAGC CTTACCATTT TTTTTGCCAA AATCTGATTC TCTTTCCATT ACTGGGAAGA 47812 .......... .......... .......... .......... .......... .......... 422 GAAACCGATA TTTGTTTCAA ATTTTCTCCA ATATCCTCGA ACGTTATTTC CATAATCCTG 47752 .......... .......... .......... .......... .......... .......... 422 TTCAATGAGG TGCTTAAGAG ATTTTGGTGT ACCGTGGGTT CTCTAAAGTG AACTTCTCCA 47692 .......... .......... .......... .......... .......... .......... 422 ACCAAGGTTC TCTTCCAAAG TGCATTTTCC TCAATATTGC ATCTCCAAAG CCATTTCATC 47632 .......... .......... .......... .......... .......... .......... 422 AAGAGGCATT TGTTATGACT TTTAGGTTTT TGATTCTCAG TCACCCATTC CTTTTGTCTC 47572 .......... .......... .......... .......... .......... .......... 422 TGGTCACTGT TTTCCAATAA TCCAATTTAC AAGGAATGCT AAAGTTGTTT GTTTATCGTC 47512 .......... .......... .......... .......... .......... .......... 422 GTGCAAAAGA AAGTCGTCTC CTTAAGTTGT CCAGGCGCTT CACCTTGATT AGTTCATTTG 47452 .......... .......... .......... .......... .......... .......... 422 CTGCCTATTT TTCAATAATG TATTAGTTAT TTCTGCATCA TATGGGCTCT ACATCTACTT 47392 .......... .......... .......... .......... .......... .......... 422 GTGTGCAGGG TTCCTTTTCT ACCATTTGTC CTCTTTTTTG TTTTTCCCGG TGTGGCAAAA 47332 .......... .......... .......... .......... .......... .......... 422 GAAGAGTGGA AAGAGGAAAC TGAATCGTTG TGTTTCCTTT TTGTTTTTTT ACTCATTGTT 47272 .......... .......... .......... .......... .......... .......... 422 AAGGTTTACG CACCACTCAC GGAGAAGGAT TCGACTTTTC ATCGCACCTT ATTTCTCTTC 47212 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTTTACG CACCACTCAC GGAGAAGGAT TCGACTTTTC ATCGCACCTT ATTTCTCTTC 479 ATGTGTACAT CAATGACCTG TCTCCTTAAA GATCAACATG AGCAGTGGAA AAGGAACCAA 47152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGTACAT CAATGACCTG TCTCCTTAAA GATCAACATG AGCAGTGGAA AAGGAACCAA 539 GACAAGCAAT CCAGGAGGTA CTTCGTCATA ATTGAATTTC GTTGTGTGAC TATAAACTAC 47092 |||||||||| ||||||| GACAAGCAAT CCAGGAG... .......... .......... .......... .......... 556 CATGCTTAGT ATCCGTTCAT CTAACTCTGA TTACTGAATG TGTTTTTCAA GTGTCAAGGT 47032 ||||||||| .......... .......... .......... .......... .......... .TGTCAAGGT 565 CTTTCGTTGC CAATTGCCCC GTGATAACTC TTTTTACTCC AGTGAACCCC CAAGAAACAA 46972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCGTTGC CAATTGCCCC GTGATAACTC TTTTTACTCC AGTGAACCCC CAAGAAACAA 625 TGGGAAAGAT AAACCTTCTA GTCCTGGAGG TAATTCCTTG GAAGGATCTA CTTTTTTCAT 46912 |||||||||| |||||||||| ||||||||| TGGGAAAGAT AAACCTTCTA GTCCTGGAG. .......... .......... .......... 654 TGGTCAATGA CTCAAGTTTA CAATTGATTT GATTAAGTAT TTGCGATTAT CTATCAAAGT 46852 .......... .......... .......... .......... .......... .......... 654 CGTTGGCCTT TCCTTTTCTT TCAACTCCAT ATTAATTGAT CACCCAAAAT ATTTACACAT 46792 .......... .......... .......... .......... .......... .......... 654 AAATTTCCTG TATTTTTTGT AATACGTCTT GTCTTTCATT TCTCAGCTGT TCTCTGTGGC 46732 |||| |||||||||| .......... .......... .......... .......... ......CTGT TCTCTGTGGC 668 TGGTGTGGTA CATGGAAAGG 46712 |||||||||| |||||||||| TGGTGTGGTA CATGGAAAGG 688 hqPGS_C08HBa0320P23.1-_SGN-E345265+ (50031 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46712) ******************************************************************************** EST sequence 69 +strand 601 n (File: SGN-E348733+) 1 GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 61 AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA GTTTAGCGAA 121 AATGGAGGAA GAATTTAATG CTGGAAGGAT CAAAGGCGCT GCTAAGAGGA CTTTGCAAAT 181 TACACCTCTT GATGAGGAAG ATCAAGAAGA GGTTCAAATT GATGACAGTG GAGATGTTGA 241 TTCGTATGAT GATGATGATG AGACGGAGGA GGAGGATGAA GACAAGGAAC CTGTGGGATT 301 AGGGGTTCTT GAAAAGCCTG AGAATTCATG GTCACTGCTA CGTGAGTTAT TTCCAAGCAA 361 AGCTGGGGGT ACTCCGGCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 421 TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG GTTTACGCAC CACTCACGGA 481 GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 541 CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAGTGTCAA 601 G Predicted gene structure (within gDNA segment 50669 to 46455): Exon 1 50069 49959 ( 111 n); cDNA 1 111 ( 111 n); score: 1.000 Intron 1 49958 49652 ( 307 n); Pd: 0.939 (s: 1.00), Pa: 0.532 (s: 1.00) Exon 2 49651 49387 ( 265 n); cDNA 112 376 ( 265 n); score: 1.000 Intron 2 49386 49274 ( 113 n); Pd: 0.236 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 49273 49190 ( 84 n); cDNA 377 460 ( 84 n); score: 1.000 Intron 3 49189 47269 (1921 n); Pd: 0.991 (s: 1.00), Pa: 0.835 (s: 1.00) Exon 4 47268 47135 ( 134 n); cDNA 461 594 ( 134 n); score: 1.000 Intron 4 47134 47041 ( 94 n); Pd: 0.974 (s: 1.00), Pa: 0.217 (s: 0) Exon 5 47040 47034 ( 7 n); cDNA 595 601 ( 7 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E348733+ 1.000 601 1.000 C PGS_C08HBa0320P23.1-_SGN-E348733+ (50069 49959,49651 49387,49273 49190,47268 47135,47040 47034) Alignment (genomic DNA sequence = upper lines): GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 50010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 60 AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA GGTATTTTTC 49950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA G......... 111 TCCTCTTAAT CGTTGTTTTT CAAAGCTTAT ATGAGCTGGT TCTCTGTAGA AAAGTAAGTC 49890 .......... .......... .......... .......... .......... .......... 111 TTTTTGATGG GAGTTCGTTA TTTTCCCAGT TGGTTCTTCA ACATGAGGTC TTTTTAACCC 49830 .......... .......... .......... .......... .......... .......... 111 TTTATTTACT TCTTTCATCA TGACATGAAC TGGGTCTCCG TAAAAATCGA GTCTTGATGG 49770 .......... .......... .......... .......... .......... .......... 111 AGTTTTAGTA TTTTGCTTGT TGTGAATTCC CTTAGTTTCT TAATTGGCTC CTGAACATGA 49710 .......... .......... .......... .......... .......... .......... 111 GGTTGTGTGA TTTTTCTGGG AAGTAATTGG TTTGTTTTTC AATCATCATT GTGGATAGTT 49650 || .......... .......... .......... .......... .......... ........TT 113 TAGCGAAAAT GGAGGAAGAA TTTAATGCTG GAAGGATCAA AGGCGCTGCT AAGAGGACTT 49590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCGAAAAT GGAGGAAGAA TTTAATGCTG GAAGGATCAA AGGCGCTGCT AAGAGGACTT 173 TGCAAATTAC ACCTCTTGAT GAGGAAGATC AAGAAGAGGT TCAAATTGAT GACAGTGGAG 49530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATTAC ACCTCTTGAT GAGGAAGATC AAGAAGAGGT TCAAATTGAT GACAGTGGAG 233 ATGTTGATTC GTATGATGAT GATGATGAGA CGGAGGAGGA GGATGAAGAC AAGGAACCTG 49470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGATTC GTATGATGAT GATGATGAGA CGGAGGAGGA GGATGAAGAC AAGGAACCTG 293 TGGGATTAGG GGTTCTTGAA AAGCCTGAGA ATTCATGGTC ACTGCTACGT GAGTTATTTC 49410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTAGG GGTTCTTGAA AAGCCTGAGA ATTCATGGTC ACTGCTACGT GAGTTATTTC 353 CAAGCAAAGC TGGGGGTACT CCGGTATGGT TAGAAAAGTT CTCTCGTTGA GTCGTTTCCG 49350 |||||||||| |||||||||| ||| CAAGCAAAGC TGGGGGTACT CCG....... .......... .......... .......... 376 CTATCTTCCA TATTCATTAG GGTGAAAGAC GCCTCCAAGG TTGATTGAGT TTTAAATTTT 49290 .......... .......... .......... .......... .......... .......... 376 GTTTCTGTGA ATGTAGGCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 49230 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 420 TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG GTATATCTTT ATGTTCTCGT 49170 |||||||||| |||||||||| |||||||||| |||||||||| TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG .......... .......... 460 GGAAGTTACA ATTTTAGCTG CACGTTGTAT CTTACATATC CTTTAGCCTA ACAACAACAG 49110 .......... .......... .......... .......... .......... .......... 460 ATGCAGTGTA GGTAGCCTCA CAAAGTGGGG TCTGGGGATC CTTTAGCCTA CTAATTGGAA 49050 .......... .......... .......... .......... .......... .......... 460 AACATTGTCT GATACAAAAT GAAGTTAGAA GTGAAGTCTT TTTAAGTTTA GGGAATAATA 48990 .......... .......... .......... .......... .......... .......... 460 TTGATAATTC TAGGAATATA TTTCATTATT TCATGTCATA ATATGCTTAA ACAATGAAGG 48930 .......... .......... .......... .......... .......... .......... 460 AACTACCCAA ATAACCAGTT AATGTTACTG AAGCTAAAAG TAATTATGGT TTTAGCTTGT 48870 .......... .......... .......... .......... .......... .......... 460 AACTTTTTGG AGGTGGCCAG CAATACCCTT AATGCTGAAG AATACAACTT TAACGGTATC 48810 .......... .......... .......... .......... .......... .......... 460 AAAAAAAAAA AACGTCTCGA TCTAATTTAC AAAAGACAAC ATTTCCAATC TAACTTGACT 48750 .......... .......... .......... .......... .......... .......... 460 TTTATACAGC ATAAAAGTCT AAATCTAACT GTACAATATA CAACATAAGA GGAGATGTGG 48690 .......... .......... .......... .......... .......... .......... 460 TTCTTTTTTC TTATTATCCT CTTGGAGTTG GTCAATGGAA CTTTAGCTCT TCTGTAGGTT 48630 .......... .......... .......... .......... .......... .......... 460 TAGGATTTAA TTGTTAATGA CTTCTGAATA TATTTCTCCT ATCTAAGTTT AAGTCTATCA 48570 .......... .......... .......... .......... .......... .......... 460 ATGTTTCTCC CATTGCATGT TTCTTTCAAC TAGATGGTCT ACCAAATGGC TTGAGCTTAT 48510 .......... .......... .......... .......... .......... .......... 460 AGTGCGAAAA ATTAGGGCCA TGTAGATACT AGTACAACGC CTCTTCTTTT GAGAATTCTC 48450 .......... .......... .......... .......... .......... .......... 460 GTATAAGCCC CAACCCCCTT TCTGTTCCAG CAGTGCAGCA GCTTTGTAAT GTAGATATGC 48390 .......... .......... .......... .......... .......... .......... 460 ATGATCCAAT GCCTGAAATT TTATAATACA TGCTCCATAA TTGACTTGTG ACCCTGCAAT 48330 .......... .......... .......... .......... .......... .......... 460 GGAAAAAGAA GAAACTATAT TCTTTGATCG CTCCACACAA TGGACACCTT CTGCAAAGCT 48270 .......... .......... .......... .......... .......... .......... 460 GAAATCCCCC TGTTTGAAGG TTTATTTGAG TGAGAAAGCT TCCCTAATCA AAATCCAAGA 48210 .......... .......... .......... .......... .......... .......... 460 AAAGCAAGAG ACCTTCAAAG GAGCTCTAAT CTATTGAACC AAATCTTCCA AGCCCATATA 48150 .......... .......... .......... .......... .......... .......... 460 TCCTTCTTGT AACTTGTTAG ATTCCATCAT AGTGTAGCAA CTTTTGACTG AATAAAGTCC 48090 .......... .......... .......... .......... .......... .......... 460 TTTGGAGTGT CTCATCCAAC TGATGGAGTT AACTTTGTTG TGATCCAAAA CTACACTGTT 48030 .......... .......... .......... .......... .......... .......... 460 TAGCATCTGA AGCAAAAAGC CTAAGCTTTC TACTTCCCAG TCATTCAAAC TCCTTCCCAG 47970 .......... .......... .......... .......... .......... .......... 460 AAAGAGATTC CAACCTTTTG CTAAATTAAA TTTTGTAATT TTCTTTCCAT TGTGTTGTGG 47910 .......... .......... .......... .......... .......... .......... 460 GGGGATAAAC TGTATATGTC CAAGAATTGG TCTTTAAGCA GATGTAGCCT TACCATTTTT 47850 .......... .......... .......... .......... .......... .......... 460 TTTGCCAAAA TCTGATTCTC TTTCCATTAC TGGGAAGAGA AACCGATATT TGTTTCAAAT 47790 .......... .......... .......... .......... .......... .......... 460 TTTCTCCAAT ATCCTCGAAC GTTATTTCCA TAATCCTGTT CAATGAGGTG CTTAAGAGAT 47730 .......... .......... .......... .......... .......... .......... 460 TTTGGTGTAC CGTGGGTTCT CTAAAGTGAA CTTCTCCAAC CAAGGTTCTC TTCCAAAGTG 47670 .......... .......... .......... .......... .......... .......... 460 CATTTTCCTC AATATTGCAT CTCCAAAGCC ATTTCATCAA GAGGCATTTG TTATGACTTT 47610 .......... .......... .......... .......... .......... .......... 460 TAGGTTTTTG ATTCTCAGTC ACCCATTCCT TTTGTCTCTG GTCACTGTTT TCCAATAATC 47550 .......... .......... .......... .......... .......... .......... 460 CAATTTACAA GGAATGCTAA AGTTGTTTGT TTATCGTCGT GCAAAAGAAA GTCGTCTCCT 47490 .......... .......... .......... .......... .......... .......... 460 TAAGTTGTCC AGGCGCTTCA CCTTGATTAG TTCATTTGCT GCCTATTTTT CAATAATGTA 47430 .......... .......... .......... .......... .......... .......... 460 TTAGTTATTT CTGCATCATA TGGGCTCTAC ATCTACTTGT GTGCAGGGTT CCTTTTCTAC 47370 .......... .......... .......... .......... .......... .......... 460 CATTTGTCCT CTTTTTTGTT TTTCCCGGTG TGGCAAAAGA AGAGTGGAAA GAGGAAACTG 47310 .......... .......... .......... .......... .......... .......... 460 AATCGTTGTG TTTCCTTTTT GTTTTTTTAC TCATTGTTAA GGTTTACGCA CCACTCACGG 47250 ||||||||| |||||||||| .......... .......... .......... .......... .GTTTACGCA CCACTCACGG 479 AGAAGGATTC GACTTTTCAT CGCACCTTAT TTCTCTTCAT GTGTACATCA ATGACCTGTC 47190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTC GACTTTTCAT CGCACCTTAT TTCTCTTCAT GTGTACATCA ATGACCTGTC 539 TCCTTAAAGA TCAACATGAG CAGTGGAAAA GGAACCAAGA CAAGCAATCC AGGAGGTACT 47130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCTTAAAGA TCAACATGAG CAGTGGAAAA GGAACCAAGA CAAGCAATCC AGGAG..... 594 TCGTCATAAT TGAATTTCGT TGTGTGACTA TAAACTACCA TGCTTAGTAT CCGTTCATCT 47070 .......... .......... .......... .......... .......... .......... 594 AACTCTGATT ACTGAATGTG TTTTTCAAGT GTCAAG 47034 | |||||| .......... .......... .........T GTCAAG 601 hqPGS_C08HBa0320P23.1-_SGN-E348733+ (50069 49959,49651 49387,49273 49190,47268 47135) ******************************************************************************** EST sequence 76 +strand 330 n (File: SGN-E338271+) 1 GCTGTTCGCT GGTTGAGGTC TCAACACTCG CTTAATCTCA GCTAAATATA ATTCAAAGCT 61 GTAAAGGAAA CGAGAAAACA TCTAATTTAG TTTAGCGAAA ATGGAGGAAG AATTTAATGC 121 TGGAAGGATC AAAGGCGCTG CTAAGAGGAC TTTGCAAATT ACACCTCTTG ATGAGGAAGA 181 TCAAGAACAG GTTCAAATTG ATGACAGTGG AGATGTTGAT TCGGATGATG ATGATGATGA 241 GACGGAGGAG GAGGATGAAT ACACGGAACC TGTGGGATTA GGGGTTCTTG ATAAGCCTGA 301 GAAATCATGG TCACTGCTAC GTGAGTTATT Predicted gene structure (within gDNA segment 50756 to 48802): Exon 1 50048 49959 ( 90 n); cDNA 1 90 ( 90 n); score: 0.978 Intron 1 49958 49652 ( 307 n); Pd: 0.939 (s: 1.00), Pa: 0.532 (s: 1.00) Exon 2 49651 49412 ( 240 n); cDNA 91 330 ( 240 n); score: 0.975 MATCH C08HBa0320P23.1- SGN-E338271+ 0.976 330 1.000 C PGS_C08HBa0320P23.1-_SGN-E338271+ (50048 49959,49651 49412) Alignment (genomic DNA sequence = upper lines): GCTGTTTGCT GTTTGAGGTC TCAACACTCG CTTAATCTCA GCTAAATATA ATTCAAAGCT 49989 |||||| ||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTCGCT GGTTGAGGTC TCAACACTCG CTTAATCTCA GCTAAATATA ATTCAAAGCT 60 GTAAAGGAAA CGAGAAAACA TCTAATTTAG GTATTTTTCT CCTCTTAATC GTTGTTTTTC 49929 |||||||||| |||||||||| |||||||||| GTAAAGGAAA CGAGAAAACA TCTAATTTAG .......... .......... .......... 90 AAAGCTTATA TGAGCTGGTT CTCTGTAGAA AAGTAAGTCT TTTTGATGGG AGTTCGTTAT 49869 .......... .......... .......... .......... .......... .......... 90 TTTCCCAGTT GGTTCTTCAA CATGAGGTCT TTTTAACCCT TTATTTACTT CTTTCATCAT 49809 .......... .......... .......... .......... .......... .......... 90 GACATGAACT GGGTCTCCGT AAAAATCGAG TCTTGATGGA GTTTTAGTAT TTTGCTTGTT 49749 .......... .......... .......... .......... .......... .......... 90 GTGAATTCCC TTAGTTTCTT AATTGGCTCC TGAACATGAG GTTGTGTGAT TTTTCTGGGA 49689 .......... .......... .......... .......... .......... .......... 90 AGTAATTGGT TTGTTTTTCA ATCATCATTG TGGATAGTTT AGCGAAAATG GAGGAAGAAT 49629 ||| |||||||||| |||||||||| .......... .......... .......... .......TTT AGCGAAAATG GAGGAAGAAT 113 TTAATGCTGG AAGGATCAAA GGCGCTGCTA AGAGGACTTT GCAAATTACA CCTCTTGATG 49569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGCTGG AAGGATCAAA GGCGCTGCTA AGAGGACTTT GCAAATTACA CCTCTTGATG 173 AGGAAGATCA AGAAGAGGTT CAAATTGATG ACAGTGGAGA TGTTGATTCG TATGATGATG 49509 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| AGGAAGATCA AGAACAGGTT CAAATTGATG ACAGTGGAGA TGTTGATTCG GATGATGATG 233 ATGATGAGAC GGAGGAGGAG GATGAAGACA AGGAACCTGT GGGATTAGGG GTTCTTGAAA 49449 |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| |||||||| | ATGATGAGAC GGAGGAGGAG GATGAATACA CGGAACCTGT GGGATTAGGG GTTCTTGATA 293 AGCCTGAGAA TTCATGGTCA CTGCTACGTG AGTTATT 49412 |||||||||| ||||||||| |||||||||| ||||||| AGCCTGAGAA ATCATGGTCA CTGCTACGTG AGTTATT 330 hqPGS_C08HBa0320P23.1-_SGN-E338271+ (50048 49959,49651 49412) ******************************************************************************** EST sequence 72 +strand 608 n (File: SGN-E348907+) 1 TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA AGATTTTGCA GCAACTTAAC 61 CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT CTCAAGAACA TCAAGCTTAT 121 GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT GCCCATATGG ATGCCAAAGT 181 TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG TAAATGAGGA TGACAAACCA 241 TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT CTCCTCAAAA CCCTAGTTTG 301 GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT CTTTAAAGCA AGCTTCTAAC 361 ACGGCTTCAC TGAATTCATT TGCAAAGGAA GGAAAACAAA TAGAGATGAT GAACCCTGTT 421 GCTGCAGAGA AAACTGGCGG CTTGGAGACG GATCTATCGG AAGTGCTAAA TGCATGGTAT 481 TCTGCGGGCC TTTACACTGG GAAAGTATCT TTCAGAGCAA TCCAAGAAGA GAGATGGTNT 541 AGCGTCGTAC TGATTCAGTT GGAACTTAAT GTGGNTGGTT GTCGATACGA CAAGAGGAAA 601 AATTCATT Predicted gene structure (within gDNA segment 54262 to 50494): Exon 1 53662 53272 ( 391 n); cDNA 1 391 ( 391 n); score: 1.000 Intron 1 53271 52436 ( 836 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 52435 52324 ( 112 n); cDNA 392 504 ( 113 n); score: 0.978 Intron 2 52323 51206 (1118 n); Pd: 0.781 (s: 0.95), Pa: 0.999 (s: 0.95) Exon 3 51205 51104 ( 102 n); cDNA 505 608 ( 104 n); score: 0.902 MATCH C08HBa0320P23.1- SGN-E348907+ 0.979 605 0.995 C PGS_C08HBa0320P23.1-_SGN-E348907+ (53662 53272,52435 52324,51205 51104) Alignment (genomic DNA sequence = upper lines): TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA AGATTTTGCA GCAACTTAAC 53603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA AGATTTTGCA GCAACTTAAC 60 CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT CTCAAGAACA TCAAGCTTAT 53543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT CTCAAGAACA TCAAGCTTAT 120 GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT GCCCATATGG ATGCCAAAGT 53483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT GCCCATATGG ATGCCAAAGT 180 TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG TAAATGAGGA TGACAAACCA 53423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG TAAATGAGGA TGACAAACCA 240 TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT CTCCTCAAAA CCCTAGTTTG 53363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT CTCCTCAAAA CCCTAGTTTG 300 GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT CTTTAAAGCA AGCTTCTAAC 53303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT CTTTAAAGCA AGCTTCTAAC 360 ACGGCTTCAC TGAATTCATT TGCAAAGGAA GGTGAGCAGC TCTCTTGATG CTTTTGTGCA 53243 |||||||||| |||||||||| |||||||||| | ACGGCTTCAC TGAATTCATT TGCAAAGGAA G......... .......... .......... 391 TGACTGCTTC TTTTTATGTC TAGGGTGTGA TGTGGTAGTA ACTGGAAGAT CCTTCAATTT 53183 .......... .......... .......... .......... .......... .......... 391 TCTATTACAT AATGAGGTGA AATGAATACG GACAAGAAGA AGACAGAGGT GGAGAAGAGG 53123 .......... .......... .......... .......... .......... .......... 391 GGGGGGGGGG GAGAGCAAGT TTTGACTTGA TTGGTTATGG ATTACATGTG TGTTTGGTAC 53063 .......... .......... .......... .......... .......... .......... 391 AAAGGATTTT CCAATTTCCC ATGTTTGGTT GGTCAAATAT TTTGGAAAAC GTTCTCTAGA 53003 .......... .......... .......... .......... .......... .......... 391 AAAACGAACT CCTTGAAATC AGGAAAATGA CTTGCCTAAT GAAGTAGGGA AAACAAGTTT 52943 .......... .......... .......... .......... .......... .......... 391 CAATAGTGAC ATTCCACATT AATTGTGTCC TCCCACCTTC CAACACATCT CATCTTTACC 52883 .......... .......... .......... .......... .......... .......... 391 CCCACACCCC TTCCTCCCCG CCCTCACCTA CCATAATATT TGTCTAAATT ATATACAATT 52823 .......... .......... .......... .......... .......... .......... 391 GCTTTTAGGA TAATATTTGC TTACCTACCG AACACGAAAA ATTAAGTAGG AAACCCACTT 52763 .......... .......... .......... .......... .......... .......... 391 ATTTTCCTGT GGAACATTTT TCAAGAAAAT ATTTCCGTGG AAAACACTTC CCTTCATACC 52703 .......... .......... .......... .......... .......... .......... 391 GAAAACACCC TACAAATGAA GTCAGTATCT CTGGGTAGCA GGGCAATCGA GTAATCTTAG 52643 .......... .......... .......... .......... .......... .......... 391 TCCATTGATT CTAGGTCCTG CTATACTGAA TGCATGTTGA TGACTTACTG CTAGGAGCAC 52583 .......... .......... .......... .......... .......... .......... 391 TAGCATCATA TAATACAATA AGGATCTCAA ATGTGCTACA GAAATTCAAA GAACAACTTA 52523 .......... .......... .......... .......... .......... .......... 391 AAAATCCAAT ATAATGTGAG AAAGAACTTT AATCTTTCAA ATGTCCTATT CCTTTAATTA 52463 .......... .......... .......... .......... .......... .......... 391 CTTTGTTTTT ACTCTTTCTA ATTTCAGGAA AACAAATAGA GATGATGAAC CCTGTTGCTG 52403 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAA AACAAATAGA GATGATGAAC CCTGTTGCTG 424 CAGAGAAAAC TGGCGGCTTG GAGACGGATC TATCGGAAGT GCTAAATGCA TGGTATTCTG 52343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGAAAAC TGGCGGCTTG GAGACGGATC TATCGGAAGT GCTAAATGCA TGGTATTCTG 484 CGGGCCTTTA CACT-GGAAA GTAAGTTTAT GTGAAGTTCG ATTCTTCAAT GGATGATATG 52284 |||||||||| |||| ||||| CGGGCCTTTA CACTGGGAAA .......... .......... .......... .......... 504 ATATGCCCCA GTGTACCTTT ATGTGGAAAC TGTTGCTTAA CACCAAACTC TTGCAAATAT 52224 .......... .......... .......... .......... .......... .......... 504 GGTAAATTTG TAAAAAATTG AAAGCAAGCT GTTTCAGAAT CAGACCATGC AAATATTTGC 52164 .......... .......... .......... .......... .......... .......... 504 TCGTAAACAT AATTTTCTGG TTGAATTTTA AAAAGGATCC ATATCACCTC TTCAGTTTAG 52104 .......... .......... .......... .......... .......... .......... 504 TGACTTTACT CTATAAAGGT TAGCTACATG AAGTTCTCTT GCTGTCCCAT AGAGAAAAAA 52044 .......... .......... .......... .......... .......... .......... 504 AGGGCTGCTG ATATTTTCTC ATAAGCTGCT TGAGAATTAG TGGGTATGGT ACTCCCTTAG 51984 .......... .......... .......... .......... .......... .......... 504 TTGGTAGGAG GTAGCAGGTG TGAAATAGTC AAGGTGCGCC CAAGGTCGTC CAAACAACAT 51924 .......... .......... .......... .......... .......... .......... 504 CGTTGTCGAA ACAAAGATAA AGTCTTCACT TGATGGAACC TTTAAAGGCA TCAGTGTAAG 51864 .......... .......... .......... .......... .......... .......... 504 AACTCGAGGT GTGGGTCAAA GGGAAACGAC AGTCAAGGGT ATGGTTCTAA AGTCTTGCAA 51804 .......... .......... .......... .......... .......... .......... 504 TACTTGTATC TTTTCTGTTG TGAGTATTTG AAGTGCTCTC ATAGAAGGAT TTGGGTTAAT 51744 .......... .......... .......... .......... .......... .......... 504 ATTCATTAGA AGATGACCTG TCTTAGGGTG TTGTTCGGTG CAGAGGTTTT CCAATTTTCC 51684 .......... .......... .......... .......... .......... .......... 504 CTCTTTCGGT TGGTCAAAAA TTTTGAAAAA TATTTTCTTT ACGAAAGTAA GTTCCTTAAA 51624 .......... .......... .......... .......... .......... .......... 504 AATAAGGCAA AAATGACTTG CCTAACGTAA TTAATGTAAT CAAGTTTCAC AAATGGTATT 51564 .......... .......... .......... .......... .......... .......... 504 GAAATAAGGC CACCTTTTGA TTGCAGCCAA GGCAAGAATG CCACGAATGG TGTTTAGCAA 51504 .......... .......... .......... .......... .......... .......... 504 CCTGAAGCAA ATGTTTTCCC TATCTCTAAA GGGGGCCCTT GGGCCACCTC CAACACAACT 51444 .......... .......... .......... .......... .......... .......... 504 CATCTTCCCC GCTATTCCCA TAACCTCATC CGCACACCCG TACCTACACC CCAACCTTCC 51384 .......... .......... .......... .......... .......... .......... 504 ATAGTATTTG TTTAGACTAT ATACAACTGT TTTTACTTTT TAGGGTAATG TATTTGCTTA 51324 .......... .......... .......... .......... .......... .......... 504 CATATCGAAC ACAAGAAAAT AAGATGCCCA CTTATTTTTC TAGAAAATTT TTTCCATGAG 51264 .......... .......... .......... .......... .......... .......... 504 TGTTTCCGTT TTAATTAGAT TTGTAGCTCA ACCCCTGAAA TATTTGAATG TGATGCAGGT 51204 || .......... .......... .......... .......... .......... ........GT 506 ATCTTTCAGA GCAATCCAAG AAGAGAGATG GT-TAGCGTC GTACTGATTC AGTTGGAACT 51145 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATCTTTCAGA GCAATCCAAG AAGAGAGATG GTNTAGCGTC GTACTGATTC AGTTGGAACT 566 TAA-ATGTGG TGTTGTCGAT ACGACAAGAG GAAAAATTCA TT 51104 ||| || ||||||||| |||||||||| |||||||||| || TAATGTGGNT GGTTGTCGAT ACGACAAGAG GAAAAATTCA TT 608 hqPGS_C08HBa0320P23.1-_SGN-E348907+ (53662 53272,52435 52324,51205 51104) ******************************************************************************** EST sequence 104 +strand 782 n (File: SGN-E555141+) 1 GGGAGGGAGG TGATAACAGC AAACTTGCAC CAGATACCAC TACAGAAATG GGGGATGCAA 61 GCAGCCTTCC ACCAGTAAAA GAAAATTCCT CTTTTGAGGC AGTTCCTCCT CAAAACCACA 121 CTGGTCAACT GAATGAGCAA AACACCCAGT ATAAGGCCAT AGAGAAGTGC AGTTCACAGA 181 GTTTAGAAGA TTACAACCAG TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA 241 AGATTTTGCA GCAACTTAAC CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT 301 CTCAAGAACA TCAAGCTTAT GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT 361 GCCCATATGG ATGCCAAAGT TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG 421 TAAATGAGGA TGACAAACCA TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT 481 CTCCTCAAAA CCCTAGTTTG GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT 541 CTTTAAAGCA AGCTTCTAAC ACGGCTTCAC TGAATTCATT TGCAAAGGAA GGAAAACAAA 601 TAGAGATGAT GAACCCTGTT GCTGCAGAGA AAACTGGCGG CTTGGAGACG GATCTATCGG 661 AAGTGCTAAA TGCATGGTAT TCTGCGGGCC TTTACACTGG AAAGTATCTT TCAGAGCAAT 721 CCAAGAAGAG AGATGGTTAG CGTCGTACTG ATTCAGTTGG AACTTAAATG TGGTGTTGTC 781 GA Predicted gene structure (within gDNA segment 54462 to 50517): Exon 1 53862 53272 ( 591 n); cDNA 1 591 ( 591 n); score: 1.000 Intron 1 53271 52436 ( 836 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 52435 52324 ( 112 n); cDNA 592 703 ( 112 n); score: 1.000 Intron 2 52323 51206 (1118 n); Pd: 0.781 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 51205 51127 ( 79 n); cDNA 704 782 ( 79 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E555141+ 1.000 782 1.000 C PGS_C08HBa0320P23.1-_SGN-E555141+ (53862 53272,52435 52324,51205 51127) Alignment (genomic DNA sequence = upper lines): GGGAGGGAGG TGATAACAGC AAACTTGCAC CAGATACCAC TACAGAAATG GGGGATGCAA 53803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGGGAGG TGATAACAGC AAACTTGCAC CAGATACCAC TACAGAAATG GGGGATGCAA 60 GCAGCCTTCC ACCAGTAAAA GAAAATTCCT CTTTTGAGGC AGTTCCTCCT CAAAACCACA 53743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCTTCC ACCAGTAAAA GAAAATTCCT CTTTTGAGGC AGTTCCTCCT CAAAACCACA 120 CTGGTCAACT GAATGAGCAA AACACCCAGT ATAAGGCCAT AGAGAAGTGC AGTTCACAGA 53683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTCAACT GAATGAGCAA AACACCCAGT ATAAGGCCAT AGAGAAGTGC AGTTCACAGA 180 GTTTAGAAGA TTACAACCAG TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA 53623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAGAAGA TTACAACCAG TTACTCTACA AATATTACGA ACTTGAGGAT CAAAGGCAAA 240 AGATTTTGCA GCAACTTAAC CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT 53563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTTGCA GCAACTTAAC CAGTTTGGCA TTTGGGGTGA TCAAAATTCT GGTTCTGCTT 300 CTCAAGAACA TCAAGCTTAT GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT 53503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGAACA TCAAGCTTAT GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT 360 GCCCATATGG ATGCCAAAGT TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG 53443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCATATGG ATGCCAAAGT TGGGTATCTC CTTGCACTGC ATCACCTTGT TGTTTGGGTG 420 TAAATGAGGA TGACAAACCA TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT 53383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGAGGA TGACAAACCA TGCGATGCGT CTATACGATG TGTTCAAGAA AAAAAATCAT 480 CTCCTCAAAA CCCTAGTTTG GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT 53323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTCAAAA CCCTAGTTTG GTTGATACAG CAAAAGAAGC TGCAGAAAAA GCACTCTCCT 540 CTTTAAAGCA AGCTTCTAAC ACGGCTTCAC TGAATTCATT TGCAAAGGAA GGTGAGCAGC 53263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTTTAAAGCA AGCTTCTAAC ACGGCTTCAC TGAATTCATT TGCAAAGGAA G......... 591 TCTCTTGATG CTTTTGTGCA TGACTGCTTC TTTTTATGTC TAGGGTGTGA TGTGGTAGTA 53203 .......... .......... .......... .......... .......... .......... 591 ACTGGAAGAT CCTTCAATTT TCTATTACAT AATGAGGTGA AATGAATACG GACAAGAAGA 53143 .......... .......... .......... .......... .......... .......... 591 AGACAGAGGT GGAGAAGAGG GGGGGGGGGG GAGAGCAAGT TTTGACTTGA TTGGTTATGG 53083 .......... .......... .......... .......... .......... .......... 591 ATTACATGTG TGTTTGGTAC AAAGGATTTT CCAATTTCCC ATGTTTGGTT GGTCAAATAT 53023 .......... .......... .......... .......... .......... .......... 591 TTTGGAAAAC GTTCTCTAGA AAAACGAACT CCTTGAAATC AGGAAAATGA CTTGCCTAAT 52963 .......... .......... .......... .......... .......... .......... 591 GAAGTAGGGA AAACAAGTTT CAATAGTGAC ATTCCACATT AATTGTGTCC TCCCACCTTC 52903 .......... .......... .......... .......... .......... .......... 591 CAACACATCT CATCTTTACC CCCACACCCC TTCCTCCCCG CCCTCACCTA CCATAATATT 52843 .......... .......... .......... .......... .......... .......... 591 TGTCTAAATT ATATACAATT GCTTTTAGGA TAATATTTGC TTACCTACCG AACACGAAAA 52783 .......... .......... .......... .......... .......... .......... 591 ATTAAGTAGG AAACCCACTT ATTTTCCTGT GGAACATTTT TCAAGAAAAT ATTTCCGTGG 52723 .......... .......... .......... .......... .......... .......... 591 AAAACACTTC CCTTCATACC GAAAACACCC TACAAATGAA GTCAGTATCT CTGGGTAGCA 52663 .......... .......... .......... .......... .......... .......... 591 GGGCAATCGA GTAATCTTAG TCCATTGATT CTAGGTCCTG CTATACTGAA TGCATGTTGA 52603 .......... .......... .......... .......... .......... .......... 591 TGACTTACTG CTAGGAGCAC TAGCATCATA TAATACAATA AGGATCTCAA ATGTGCTACA 52543 .......... .......... .......... .......... .......... .......... 591 GAAATTCAAA GAACAACTTA AAAATCCAAT ATAATGTGAG AAAGAACTTT AATCTTTCAA 52483 .......... .......... .......... .......... .......... .......... 591 ATGTCCTATT CCTTTAATTA CTTTGTTTTT ACTCTTTCTA ATTTCAGGAA AACAAATAGA 52423 ||| |||||||||| .......... .......... .......... .......... .......GAA AACAAATAGA 604 GATGATGAAC CCTGTTGCTG CAGAGAAAAC TGGCGGCTTG GAGACGGATC TATCGGAAGT 52363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGAAC CCTGTTGCTG CAGAGAAAAC TGGCGGCTTG GAGACGGATC TATCGGAAGT 664 GCTAAATGCA TGGTATTCTG CGGGCCTTTA CACTGGAAAG TAAGTTTATG TGAAGTTCGA 52303 |||||||||| |||||||||| |||||||||| ||||||||| GCTAAATGCA TGGTATTCTG CGGGCCTTTA CACTGGAAA. .......... .......... 703 TTCTTCAATG GATGATATGA TATGCCCCAG TGTACCTTTA TGTGGAAACT GTTGCTTAAC 52243 .......... .......... .......... .......... .......... .......... 703 ACCAAACTCT TGCAAATATG GTAAATTTGT AAAAAATTGA AAGCAAGCTG TTTCAGAATC 52183 .......... .......... .......... .......... .......... .......... 703 AGACCATGCA AATATTTGCT CGTAAACATA ATTTTCTGGT TGAATTTTAA AAAGGATCCA 52123 .......... .......... .......... .......... .......... .......... 703 TATCACCTCT TCAGTTTAGT GACTTTACTC TATAAAGGTT AGCTACATGA AGTTCTCTTG 52063 .......... .......... .......... .......... .......... .......... 703 CTGTCCCATA GAGAAAAAAA GGGCTGCTGA TATTTTCTCA TAAGCTGCTT GAGAATTAGT 52003 .......... .......... .......... .......... .......... .......... 703 GGGTATGGTA CTCCCTTAGT TGGTAGGAGG TAGCAGGTGT GAAATAGTCA AGGTGCGCCC 51943 .......... .......... .......... .......... .......... .......... 703 AAGGTCGTCC AAACAACATC GTTGTCGAAA CAAAGATAAA GTCTTCACTT GATGGAACCT 51883 .......... .......... .......... .......... .......... .......... 703 TTAAAGGCAT CAGTGTAAGA ACTCGAGGTG TGGGTCAAAG GGAAACGACA GTCAAGGGTA 51823 .......... .......... .......... .......... .......... .......... 703 TGGTTCTAAA GTCTTGCAAT ACTTGTATCT TTTCTGTTGT GAGTATTTGA AGTGCTCTCA 51763 .......... .......... .......... .......... .......... .......... 703 TAGAAGGATT TGGGTTAATA TTCATTAGAA GATGACCTGT CTTAGGGTGT TGTTCGGTGC 51703 .......... .......... .......... .......... .......... .......... 703 AGAGGTTTTC CAATTTTCCC TCTTTCGGTT GGTCAAAAAT TTTGAAAAAT ATTTTCTTTA 51643 .......... .......... .......... .......... .......... .......... 703 CGAAAGTAAG TTCCTTAAAA ATAAGGCAAA AATGACTTGC CTAACGTAAT TAATGTAATC 51583 .......... .......... .......... .......... .......... .......... 703 AAGTTTCACA AATGGTATTG AAATAAGGCC ACCTTTTGAT TGCAGCCAAG GCAAGAATGC 51523 .......... .......... .......... .......... .......... .......... 703 CACGAATGGT GTTTAGCAAC CTGAAGCAAA TGTTTTCCCT ATCTCTAAAG GGGGCCCTTG 51463 .......... .......... .......... .......... .......... .......... 703 GGCCACCTCC AACACAACTC ATCTTCCCCG CTATTCCCAT AACCTCATCC GCACACCCGT 51403 .......... .......... .......... .......... .......... .......... 703 ACCTACACCC CAACCTTCCA TAGTATTTGT TTAGACTATA TACAACTGTT TTTACTTTTT 51343 .......... .......... .......... .......... .......... .......... 703 AGGGTAATGT ATTTGCTTAC ATATCGAACA CAAGAAAATA AGATGCCCAC TTATTTTTCT 51283 .......... .......... .......... .......... .......... .......... 703 AGAAAATTTT TTCCATGAGT GTTTCCGTTT TAATTAGATT TGTAGCTCAA CCCCTGAAAT 51223 .......... .......... .......... .......... .......... .......... 703 ATTTGAATGT GATGCAGGTA TCTTTCAGAG CAATCCAAGA AGAGAGATGG TTAGCGTCGT 51163 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTA TCTTTCAGAG CAATCCAAGA AGAGAGATGG TTAGCGTCGT 746 ACTGATTCAG TTGGAACTTA AATGTGGTGT TGTCGA 51127 |||||||||| |||||||||| |||||||||| |||||| ACTGATTCAG TTGGAACTTA AATGTGGTGT TGTCGA 782 hqPGS_C08HBa0320P23.1-_SGN-E555141+ (53862 53272,52435 52324,51205 51127) ******************************************************************************** EST sequence 93 +strand 541 n (File: SGN-E231079+) 1 TAAGTCATTA CTAGAGAAAG CAATGTCATC CACGCAGAAG AAGGACAATA CCTGATGTCG 61 ACCTCCTTAT AAACATTGAA TGATCCGATT TACTTATTTG AAAACCGGCT CCTTCCTCTA 121 CTCCTATTTC GGCTCTTATA CATGCTGCTG TCACCTTTCA AACCAAGCTC TTGTGCCTGC 181 TTTAGCTTGC CGGAGGCCGT AACATAAATC GCTTTCTTGA GCTTGCATAC CAAGTTAGGA 241 TTCCTAGGAG AAGAGAAGCC TGGAGTTGGA GGAGGCTGAA TAGAAACTTA TTCTTGCCCC 301 CTTCCCTTAT GTTGTTGAAA GGCATTCTAT TCTGCACGTC AAATTGAAAT AAGGCCACCT 361 TTTGATTGCA GCCAAGGCAA GAATGCCACG AATGGTGTTT AGCAACCTGA AGCAAATGTT 421 TTCCCTATCT CTAAAGGGGG CCCTTGGGCC ACTTGACTGT AAGGAAAGGG GTTCGACTCA 481 ATATTCTTGA AGGAATCCTT TAGCTACTAA TCTAGCCTTG TATCTATCTA CCGAGCCATC 541 T Predicted gene structure (within gDNA segment 56186 to 49957): Exon 1 55391 55381 ( 11 n); cDNA 311 320 ( 10 n); score: 0.818 Intron 1 55380 52662 (2719 n); Pd: 0.226 (s: 0), Pa: 0.443 (s: 0) Exon 2 52661 52653 ( 9 n); cDNA 321 329 ( 9 n); score: 0.778 Intron 2 52652 51580 (1073 n); Pd: 0.781 (s: 0), Pa: 0.000 (s: 0.84) Exon 3 51579 51457 ( 123 n); cDNA 330 452 ( 123 n); score: 0.935 MATCH C08HBa0320P23.1- SGN-E231079+ 0.935 143 0.264 C PGS_C08HBa0320P23.1-_SGN-E231079+ (55391 55381,52661 52653,51579 51457) Alignment (genomic DNA sequence = upper lines): GTTGAATGAA AGTATTGTGG CTCTCTTTTC TCCCCCTTTT CTGTTCCTTC TTTTTCACGA 55332 |||| |||| | GTTGT-TGAA A......... .......... .......... .......... .......... 320 TCATAATTCT TGACATCATT TTGATTCCAC TACTTCTCTG CATTGGCCAT GATCTTTTGT 55272 .......... .......... .......... .......... .......... .......... 320 CTCCTCCTAA CTTCCCTAGC TTCCATACAG CCTGCTTTTC TCTCAAACCC TCCAAATCAG 55212 .......... .......... .......... .......... .......... .......... 320 TCTTCATCCC GACCCCTTCC ATAAAGAGAG TAACTTAAGT CACAGCTGCT ATTGCACAGA 55152 .......... .......... .......... .......... .......... .......... 320 GCTTAGAATC AAACACAATA CTTGTTTACT GATTGTTATC ATTTCTTACT CCTTTCCCCT 55092 .......... .......... .......... .......... .......... .......... 320 TTCTAAGAAA ATTTTATATG TTTCTCTTGA TGTTCCTCTT TCCAATTTCC AGATTATGCA 55032 .......... .......... .......... .......... .......... .......... 320 TAGTTTAGAA GCTAAAGTTA GCAGCAAAGA GGAGAATGTG ACAGCTCCTG ATGACGGAAG 54972 .......... .......... .......... .......... .......... .......... 320 CAATGAGCTG AAAAGGTCCA TTTATGACTC AATTTGAGTG ATATCTCTTT TTATTTCTTA 54912 .......... .......... .......... .......... .......... .......... 320 TATCGAGCTT AATGATTAAA AATTATCATG AAGGAAATGC TACCAGCTAA GAAGACTTGG 54852 .......... .......... .......... .......... .......... .......... 320 ACATTTCTAG CTCTTAATGA ATTCAATTTT TAGACTCAAA ATGAGTGATA TTAAATGGAA 54792 .......... .......... .......... .......... .......... .......... 320 AAGTTTGTTA TTTTCTAACT CTCAATGAAT TCAATCTATG ACTCTAAATG AGTGATATTA 54732 .......... .......... .......... .......... .......... .......... 320 AATGAGTTTG AAAGGCCTAT TCATCATTTG AATCAACAGA CATTTCTTTT TATCTCTTCT 54672 .......... .......... .......... .......... .......... .......... 320 TTGAGCTTTT TAGTGTTGAA ATGATAATGA ATAGGAAATG CTACTACTTG AAAAGATTTG 54612 .......... .......... .......... .......... .......... .......... 320 CACAAATCTA GAGAATTAGA AAAGTTTGGT GTTCTCAAAC TCTTTTTATT ACGTAATTCT 54552 .......... .......... .......... .......... .......... .......... 320 CTTAAATTGA TGCATCTTGA GATGTCTGCT TTATTCTGCT TGGGTTTCAA CTTAGAGGTA 54492 .......... .......... .......... .......... .......... .......... 320 TGTTAAGCAC TTTTACTTTG CCTTTCTAGT AGGGCTCTGA TTAAAATTCT TACATATTCT 54432 .......... .......... .......... .......... .......... .......... 320 GGTTGGTAGA CTCATAGGTC AGATATCATC TTTCTGATGA TTTATCGTTG CAATACGTTG 54372 .......... .......... .......... .......... .......... .......... 320 TTTATATGCC ACAACTTCCC CTGTTGATTG CTTTATTATT GAACTTTAAC TTCCTCCCTG 54312 .......... .......... .......... .......... .......... .......... 320 TATCCACTTC TTCTACTTTT TGTTTGCTTC ACATGTGCCA GCCTGGGCAG TAAATATGCA 54252 .......... .......... .......... .......... .......... .......... 320 GAGGTACTTC TTCTGTCCCA GTTGTGAAGG AGTTTGGAGT ACTTGGGTCA AAACACTTAA 54192 .......... .......... .......... .......... .......... .......... 320 TTTTTACTAT GAATAAACTA TACATATTTG AAAACTATCC CTCATTTATG GGATTTCACT 54132 .......... .......... .......... .......... .......... .......... 320 GGGTATAATG TTGTAAAAAC TTTATGACAT ACTACAAGTC AAATGTCAAC ATCTAATGAT 54072 .......... .......... .......... .......... .......... .......... 320 TCAAAATATT TTTAAATATT TTTAAGAATA GTCAAAGAAA AAACTGTTTT ACTCCCCAAA 54012 .......... .......... .......... .......... .......... .......... 320 CCGTAACACC TTTACATAAA ATGGGACTGA GAGAATACTT CTTGTGATAA GCTTTTTCAA 53952 .......... .......... .......... .......... .......... .......... 320 GTGACATCAG GAAAAACAAT TAACTGTCTG GAGACTGACG TTCTGCTTTA TTTCTCTTTT 53892 .......... .......... .......... .......... .......... .......... 320 TTGTTTTCAC CTGTGTGGAT GAAGCAAAGG GGAGGGAGGT GATAACAGCA AACTTGCACC 53832 .......... .......... .......... .......... .......... .......... 320 AGATACCACT ACAGAAATGG GGGATGCAAG CAGCCTTCCA CCAGTAAAAG AAAATTCCTC 53772 .......... .......... .......... .......... .......... .......... 320 TTTTGAGGCA GTTCCTCCTC AAAACCACAC TGGTCAACTG AATGAGCAAA ACACCCAGTA 53712 .......... .......... .......... .......... .......... .......... 320 TAAGGCCATA GAGAAGTGCA GTTCACAGAG TTTAGAAGAT TACAACCAGT TACTCTACAA 53652 .......... .......... .......... .......... .......... .......... 320 ATATTACGAA CTTGAGGATC AAAGGCAAAA GATTTTGCAG CAACTTAACC AGTTTGGCAT 53592 .......... .......... .......... .......... .......... .......... 320 TTGGGGTGAT CAAAATTCTG GTTCTGCTTC TCAAGAACAT CAAGCTTATG CATCACATAA 53532 .......... .......... .......... .......... .......... .......... 320 TTTAAATCCA ACAGAGTCTT CTTTCTACTG CCCATATGGA TGCCAAAGTT GGGTATCTCC 53472 .......... .......... .......... .......... .......... .......... 320 TTGCACTGCA TCACCTTGTT GTTTGGGTGT AAATGAGGAT GACAAACCAT GCGATGCGTC 53412 .......... .......... .......... .......... .......... .......... 320 TATACGATGT GTTCAAGAAA AAAAATCATC TCCTCAAAAC CCTAGTTTGG TTGATACAGC 53352 .......... .......... .......... .......... .......... .......... 320 AAAAGAAGCT GCAGAAAAAG CACTCTCCTC TTTAAAGCAA GCTTCTAACA CGGCTTCACT 53292 .......... .......... .......... .......... .......... .......... 320 GAATTCATTT GCAAAGGAAG GTGAGCAGCT CTCTTGATGC TTTTGTGCAT GACTGCTTCT 53232 .......... .......... .......... .......... .......... .......... 320 TTTTATGTCT AGGGTGTGAT GTGGTAGTAA CTGGAAGATC CTTCAATTTT CTATTACATA 53172 .......... .......... .......... .......... .......... .......... 320 ATGAGGTGAA ATGAATACGG ACAAGAAGAA GACAGAGGTG GAGAAGAGGG GGGGGGGGGG 53112 .......... .......... .......... .......... .......... .......... 320 AGAGCAAGTT TTGACTTGAT TGGTTATGGA TTACATGTGT GTTTGGTACA AAGGATTTTC 53052 .......... .......... .......... .......... .......... .......... 320 CAATTTCCCA TGTTTGGTTG GTCAAATATT TTGGAAAACG TTCTCTAGAA AAACGAACTC 52992 .......... .......... .......... .......... .......... .......... 320 CTTGAAATCA GGAAAATGAC TTGCCTAATG AAGTAGGGAA AACAAGTTTC AATAGTGACA 52932 .......... .......... .......... .......... .......... .......... 320 TTCCACATTA ATTGTGTCCT CCCACCTTCC AACACATCTC ATCTTTACCC CCACACCCCT 52872 .......... .......... .......... .......... .......... .......... 320 TCCTCCCCGC CCTCACCTAC CATAATATTT GTCTAAATTA TATACAATTG CTTTTAGGAT 52812 .......... .......... .......... .......... .......... .......... 320 AATATTTGCT TACCTACCGA ACACGAAAAA TTAAGTAGGA AACCCACTTA TTTTCCTGTG 52752 .......... .......... .......... .......... .......... .......... 320 GAACATTTTT CAAGAAAATA TTTCCGTGGA AAACACTTCC CTTCATACCG AAAACACCCT 52692 .......... .......... .......... .......... .......... .......... 320 ACAAATGAAG TCAGTATCTC TGGGTAGCAG GGCAATCGAG TAATCTTAGT CCATTGATTC 52632 |||| || | .......... .......... .......... GGCATTCTA. .......... .......... 329 TAGGTCCTGC TATACTGAAT GCATGTTGAT GACTTACTGC TAGGAGCACT AGCATCATAT 52572 .......... .......... .......... .......... .......... .......... 329 AATACAATAA GGATCTCAAA TGTGCTACAG AAATTCAAAG AACAACTTAA AAATCCAATA 52512 .......... .......... .......... .......... .......... .......... 329 TAATGTGAGA AAGAACTTTA ATCTTTCAAA TGTCCTATTC CTTTAATTAC TTTGTTTTTA 52452 .......... .......... .......... .......... .......... .......... 329 CTCTTTCTAA TTTCAGGAAA ACAAATAGAG ATGATGAACC CTGTTGCTGC AGAGAAAACT 52392 .......... .......... .......... .......... .......... .......... 329 GGCGGCTTGG AGACGGATCT ATCGGAAGTG CTAAATGCAT GGTATTCTGC GGGCCTTTAC 52332 .......... .......... .......... .......... .......... .......... 329 ACTGGAAAGT AAGTTTATGT GAAGTTCGAT TCTTCAATGG ATGATATGAT ATGCCCCAGT 52272 .......... .......... .......... .......... .......... .......... 329 GTACCTTTAT GTGGAAACTG TTGCTTAACA CCAAACTCTT GCAAATATGG TAAATTTGTA 52212 .......... .......... .......... .......... .......... .......... 329 AAAAATTGAA AGCAAGCTGT TTCAGAATCA GACCATGCAA ATATTTGCTC GTAAACATAA 52152 .......... .......... .......... .......... .......... .......... 329 TTTTCTGGTT GAATTTTAAA AAGGATCCAT ATCACCTCTT CAGTTTAGTG ACTTTACTCT 52092 .......... .......... .......... .......... .......... .......... 329 ATAAAGGTTA GCTACATGAA GTTCTCTTGC TGTCCCATAG AGAAAAAAAG GGCTGCTGAT 52032 .......... .......... .......... .......... .......... .......... 329 ATTTTCTCAT AAGCTGCTTG AGAATTAGTG GGTATGGTAC TCCCTTAGTT GGTAGGAGGT 51972 .......... .......... .......... .......... .......... .......... 329 AGCAGGTGTG AAATAGTCAA GGTGCGCCCA AGGTCGTCCA AACAACATCG TTGTCGAAAC 51912 .......... .......... .......... .......... .......... .......... 329 AAAGATAAAG TCTTCACTTG ATGGAACCTT TAAAGGCATC AGTGTAAGAA CTCGAGGTGT 51852 .......... .......... .......... .......... .......... .......... 329 GGGTCAAAGG GAAACGACAG TCAAGGGTAT GGTTCTAAAG TCTTGCAATA CTTGTATCTT 51792 .......... .......... .......... .......... .......... .......... 329 TTCTGTTGTG AGTATTTGAA GTGCTCTCAT AGAAGGATTT GGGTTAATAT TCATTAGAAG 51732 .......... .......... .......... .......... .......... .......... 329 ATGACCTGTC TTAGGGTGTT GTTCGGTGCA GAGGTTTTCC AATTTTCCCT CTTTCGGTTG 51672 .......... .......... .......... .......... .......... .......... 329 GTCAAAAATT TTGAAAAATA TTTTCTTTAC GAAAGTAAGT TCCTTAAAAA TAAGGCAAAA 51612 .......... .......... .......... .......... .......... .......... 329 ATGACTTGCC TAACGTAATT AATGTAATCA AGTTTCACAA ATGGTATTGA AATAAGGCCA 51552 || || | ||||| |||||||||| .......... .......... .......... ..TTCTGCAC GTCAAATTGA AATAAGGCCA 357 CCTTTTGATT GCAGCCAAGG CAAGAATGCC ACGAATGGTG TTTAGCAACC TGAAGCAAAT 51492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTGATT GCAGCCAAGG CAAGAATGCC ACGAATGGTG TTTAGCAACC TGAAGCAAAT 417 GTTTTCCCTA TCTCTAAAGG GGGCCCTTGG GCCAC 51457 |||||||||| |||||||||| |||||||||| ||||| GTTTTCCCTA TCTCTAAAGG GGGCCCTTGG GCCAC 452 hqPGS_C08HBa0320P23.1-_SGN-E231079+ (51579 51457) ******************************************************************************** EST sequence 39 -strand 535 n (File: SGN-E353459-) 1 TCAAATTGAA ATAAGGCCAC CTTTTGATTG CAGCCAAGGC AAGAATGCCA CGAATGGTGT 61 TTAGCAACCT GAAGCAAATG TTTTCCCTAT CTCTAAAGGG GGCCCTTGGG CCACTTGACT 121 GTAAGGAAAG GGGTTCGACT CAATATTCTT GAAGGAATCC TTTAGCTACT AATCTAGCCT 181 TGTATCTATC TACCGAGCCA TCTGCTTTAT GCTTGATCTT GTAAATCCAC TTGCAGCCAA 241 TGGCTTCTTT CCCTGCAGGC AATGAGACTA AGTCTTATTA TTTTTTTCCT GGGCATTGAT 301 TTCTTCCTGT ATAGCATCTC TCCAGCAAGA ATGATTGGAG GCTTCAGCAA ATGATTCAGG 361 TTCATGAGAA GATTGAACTG AGATGAGGTA AGCTCGATCT TTTGTTTTGG GGAAAACGAT 421 TCATAAGCCT TCAACAGGAT AAGAAACTTG AGAGGATCGA CGAAGCTGAG AGCGGGATCC 481 AGAATTTTAG GAAGCGACTG GAAGGGAAGC AACTGGGCTA GACTGCTGAT CTTCT Predicted gene structure (within gDNA segment 52216 to 46647): Exon 1 51566 51457 ( 110 n); cDNA 5 114 ( 110 n); score: 1.000 Intron 1 51456 51221 ( 236 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 51220 51206 ( 15 n); cDNA 115 129 ( 15 n); score: 0.667 Intron 2 51205 49274 (1932 n); Pd: 0.900 (s: 0), Pa: 0.974 (s: 0) Exon 3 49273 49251 ( 23 n); cDNA 130 150 ( 21 n); score: 0.652 MATCH C08HBa0320P23.1- SGN-E353459- 1.000 148 0.277 C PGS_C08HBa0320P23.1-_SGN-E353459- (51566 51457,51220 51206,49273 49251) Alignment (genomic DNA sequence = upper lines): ATTGAAATAA GGCCACCTTT TGATTGCAGC CAAGGCAAGA ATGCCACGAA TGGTGTTTAG 51507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAAATAA GGCCACCTTT TGATTGCAGC CAAGGCAAGA ATGCCACGAA TGGTGTTTAG 64 CAACCTGAAG CAAATGTTTT CCCTATCTCT AAAGGGGGCC CTTGGGCCAC CTCCAACACA 51447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTGAAG CAAATGTTTT CCCTATCTCT AAAGGGGGCC CTTGGGCCAC .......... 114 ACTCATCTTC CCCGCTATTC CCATAACCTC ATCCGCACAC CCGTACCTAC ACCCCAACCT 51387 .......... .......... .......... .......... .......... .......... 114 TCCATAGTAT TTGTTTAGAC TATATACAAC TGTTTTTACT TTTTAGGGTA ATGTATTTGC 51327 .......... .......... .......... .......... .......... .......... 114 TTACATATCG AACACAAGAA AATAAGATGC CCACTTATTT TTCTAGAAAA TTTTTTCCAT 51267 .......... .......... .......... .......... .......... .......... 114 GAGTGTTTCC GTTTTAATTA GATTTGTAGC TCAACCCCTG AAATATTTGA ATGTGATGCA 51207 |||| ||| | | | .......... .......... .......... .......... ......TTGA CTGTAAGGAA 128 GGTATCTTTC AGAGCAATCC AAGAAGAGAG ATGGTTAGCG TCGTACTGAT TCAGTTGGAA 51147 A......... .......... .......... .......... .......... .......... 129 CTTAAATGTG GTGTTGTCGA TACGACAAGA GGAAAAATTC ATTGTACTAA TGTTTGTGCA 51087 .......... .......... .......... .......... .......... .......... 129 CTAGAATTCA AAGCTGTGAT GTAAAACTAG ATGTTGTACA GCATTTCTGG TAGGTTGATT 51027 .......... .......... .......... .......... .......... .......... 129 TTTCCAAATA TTGACAATAC AGTTGTTTTT TCCCCTTTTT TGGGGGTGGG GTGGGGGTTC 50967 .......... .......... .......... .......... .......... .......... 129 AAGTGTTGAG CTTCAGTTTT TTTCTTTCAC CCTCACTGTA GGCGTTTGCA CATTAATTTG 50907 .......... .......... .......... .......... .......... .......... 129 ATGATGTGTG AAAAATGAGA GTAGTATTTG AAGTTAAATT GAATAGTGCA TTAGAAAATT 50847 .......... .......... .......... .......... .......... .......... 129 GAAGTTGTGT TTGAAACGTG CAATTTACTT TAGATTTTAT GAAGTTTTGT GAGGGAAATT 50787 .......... .......... .......... .......... .......... .......... 129 AAATTATTTA CTTGAAAATG TGGTCCAGCA AGTTTTTCAA ATTTAAAAAA ATGAGCTTCA 50727 .......... .......... .......... .......... .......... .......... 129 AGTTGGAATG AAAAATTGAC TTATTATTGG ACAAATTTTG TTCTATTATT TTGGGAAAAG 50667 .......... .......... .......... .......... .......... .......... 129 GAAAATGTTT TATTTGAAGT AGAAATTTTT GGGTTGATTT ACTCAAATGT CCTTTTTTAA 50607 .......... .......... .......... .......... .......... .......... 129 GTTTGTAAAT TTTGTTTTTA TTTTGATAAG TTGTGTATTT GGGAAATTAC CTTTCAGACA 50547 .......... .......... .......... .......... .......... .......... 129 AAAATAGATA GAGGTGTAAT GTTTAAGCAT ATATTAACCA ATGTTGCATA CAAAAAAACT 50487 .......... .......... .......... .......... .......... .......... 129 AGACTGTTGT TTAATGTTTG TAAAAATTTA CAAATTTAAG TTTGTGATTT AACATTTTCT 50427 .......... .......... .......... .......... .......... .......... 129 CCTTAGACTT TGTTGAAAGA GATCTTTTAA GTTATGATTT AAAAGGTATA GACGTTACCA 50367 .......... .......... .......... .......... .......... .......... 129 GAGAATAAAA GAAAATTACT TTTCAACACG AGAAGATACA ATCTTTTAAC AACAGAGAAC 50307 .......... .......... .......... .......... .......... .......... 129 GATACAATCT ATCCAAATAT TGCATTCATT AAAAATACAT TATGATACAA TAAAATACAA 50247 .......... .......... .......... .......... .......... .......... 129 TATAATATAA TACAATACAT TATGAAACAA TACGTAACAA TCATCGGAAC AAAATGTAAT 50187 .......... .......... .......... .......... .......... .......... 129 ACAAGGGGCA AACGTGCATT TTTCCCATGA GTTGGGCCAA TTTCTAATAA CCCACATTTA 50127 .......... .......... .......... .......... .......... .......... 129 TTTAAGCCCA ATTATAAATA GAGGTTTATG TCTCTATGCC TTTAACCCTT CTCCTTGGTT 50067 .......... .......... .......... .......... .......... .......... 129 GCTCTGTTCC AGCTGTTTGC TGTTTGCTGT TTGAGGTCTC AACACTCGCT TAATCTCAGC 50007 .......... .......... .......... .......... .......... .......... 129 TAAATATAAT TCAAAGCTGT AAAGGAAACG AGAAAACATC TAATTTAGGT ATTTTTCTCC 49947 .......... .......... .......... .......... .......... .......... 129 TCTTAATCGT TGTTTTTCAA AGCTTATATG AGCTGGTTCT CTGTAGAAAA GTAAGTCTTT 49887 .......... .......... .......... .......... .......... .......... 129 TTGATGGGAG TTCGTTATTT TCCCAGTTGG TTCTTCAACA TGAGGTCTTT TTAACCCTTT 49827 .......... .......... .......... .......... .......... .......... 129 ATTTACTTCT TTCATCATGA CATGAACTGG GTCTCCGTAA AAATCGAGTC TTGATGGAGT 49767 .......... .......... .......... .......... .......... .......... 129 TTTAGTATTT TGCTTGTTGT GAATTCCCTT AGTTTCTTAA TTGGCTCCTG AACATGAGGT 49707 .......... .......... .......... .......... .......... .......... 129 TGTGTGATTT TTCTGGGAAG TAATTGGTTT GTTTTTCAAT CATCATTGTG GATAGTTTAG 49647 .......... .......... .......... .......... .......... .......... 129 CGAAAATGGA GGAAGAATTT AATGCTGGAA GGATCAAAGG CGCTGCTAAG AGGACTTTGC 49587 .......... .......... .......... .......... .......... .......... 129 AAATTACACC TCTTGATGAG GAAGATCAAG AAGAGGTTCA AATTGATGAC AGTGGAGATG 49527 .......... .......... .......... .......... .......... .......... 129 TTGATTCGTA TGATGATGAT GATGAGACGG AGGAGGAGGA TGAAGACAAG GAACCTGTGG 49467 .......... .......... .......... .......... .......... .......... 129 GATTAGGGGT TCTTGAAAAG CCTGAGAATT CATGGTCACT GCTACGTGAG TTATTTCCAA 49407 .......... .......... .......... .......... .......... .......... 129 GCAAAGCTGG GGGTACTCCG GTATGGTTAG AAAAGTTCTC TCGTTGAGTC GTTTCCGCTA 49347 .......... .......... .......... .......... .......... .......... 129 TCTTCCATAT TCATTAGGGT GAAAGACGCC TCCAAGGTTG ATTGAGTTTT AAATTTTGTT 49287 .......... .......... .......... .......... .......... .......... 129 TCTGTGAATG TAGGCTTGGT TGGATCCAAT AAACTT 49251 | ||| | || |||| | ||| .......... ...G--GGGT TCGACTCAAT ATTCTT 150 hqPGS_C08HBa0320P23.1-_SGN-E353459- (51566 51457) ******************************************************************************** EST sequence 35 -strand 505 n (File: SGN-E352216-) 1 CAGCCAAGGC AAGAATGCCA CGAATGGTGT TNAGCAACCT GAAGCAAATG TTTTCCCTAT 61 CTCTAAAGGG GGCCCTTGGG CCACTTGACT GTAAGGAAAG GGGTTCGACT CAATATTCTT 121 GAAGGAATCC TTTAGCTACT AATCTAGCCT TGTATCTATC TACCGAGCCA TCTGCTTTAT 181 GCTTGATCTT GTAAATCCAC TTGCAGCCAA TGGCTTCTTT CCCTGCAGGC AATGAGACTA 241 AGTCTTATTA TTTTTTTCCT GGGCATTGAT TTCTTCCTGT ATAGCATCTC TCCAGCAAGA 301 ATGATTGGAG GCTTCAGCAA ATGATTCAGG TTCATGAGAA GATTGAACTG AGATGAGGTA 361 AGCTCGATCT TTTGTTTTGG GGAAAACGAT TCATAAGCCT TCAACAGGAT AAGAAACTTG 421 AGAGGATCGA CGAAGCTGAG AGCGGGATCC AGAATTTTAG GAAGCGACTG GAAGGGAAGC 481 AACTGGGCTA GACTGCTGAT CTTCT Predicted gene structure (within gDNA segment 52150 to 46647): Exon 1 51540 51457 ( 84 n); cDNA 1 84 ( 84 n); score: 0.988 Intron 1 51456 51221 ( 236 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 51220 51206 ( 15 n); cDNA 85 99 ( 15 n); score: 0.667 Intron 2 51205 49274 (1932 n); Pd: 0.900 (s: 0), Pa: 0.974 (s: 0) Exon 3 49273 49251 ( 23 n); cDNA 100 120 ( 21 n); score: 0.652 MATCH C08HBa0320P23.1- SGN-E352216- 0.988 122 0.242 C PGS_C08HBa0320P23.1-_SGN-E352216- (51540 51457,51220 51206,49273 49251) Alignment (genomic DNA sequence = upper lines): CAGCCAAGGC AAGAATGCCA CGAATGGTGT TTAGCAACCT GAAGCAAATG TTTTCCCTAT 51481 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CAGCCAAGGC AAGAATGCCA CGAATGGTGT TNAGCAACCT GAAGCAAATG TTTTCCCTAT 60 CTCTAAAGGG GGCCCTTGGG CCACCTCCAA CACAACTCAT CTTCCCCGCT ATTCCCATAA 51421 |||||||||| |||||||||| |||| CTCTAAAGGG GGCCCTTGGG CCAC...... .......... .......... .......... 84 CCTCATCCGC ACACCCGTAC CTACACCCCA ACCTTCCATA GTATTTGTTT AGACTATATA 51361 .......... .......... .......... .......... .......... .......... 84 CAACTGTTTT TACTTTTTAG GGTAATGTAT TTGCTTACAT ATCGAACACA AGAAAATAAG 51301 .......... .......... .......... .......... .......... .......... 84 ATGCCCACTT ATTTTTCTAG AAAATTTTTT CCATGAGTGT TTCCGTTTTA ATTAGATTTG 51241 .......... .......... .......... .......... .......... .......... 84 TAGCTCAACC CCTGAAATAT TTGAATGTGA TGCAGGTATC TTTCAGAGCA ATCCAAGAAG 51181 |||| ||| | | | .......... .......... TTGACTGTAA GGAAA..... .......... .......... 99 AGAGATGGTT AGCGTCGTAC TGATTCAGTT GGAACTTAAA TGTGGTGTTG TCGATACGAC 51121 .......... .......... .......... .......... .......... .......... 99 AAGAGGAAAA ATTCATTGTA CTAATGTTTG TGCACTAGAA TTCAAAGCTG TGATGTAAAA 51061 .......... .......... .......... .......... .......... .......... 99 CTAGATGTTG TACAGCATTT CTGGTAGGTT GATTTTTCCA AATATTGACA ATACAGTTGT 51001 .......... .......... .......... .......... .......... .......... 99 TTTTTCCCCT TTTTTGGGGG TGGGGTGGGG GTTCAAGTGT TGAGCTTCAG TTTTTTTCTT 50941 .......... .......... .......... .......... .......... .......... 99 TCACCCTCAC TGTAGGCGTT TGCACATTAA TTTGATGATG TGTGAAAAAT GAGAGTAGTA 50881 .......... .......... .......... .......... .......... .......... 99 TTTGAAGTTA AATTGAATAG TGCATTAGAA AATTGAAGTT GTGTTTGAAA CGTGCAATTT 50821 .......... .......... .......... .......... .......... .......... 99 ACTTTAGATT TTATGAAGTT TTGTGAGGGA AATTAAATTA TTTACTTGAA AATGTGGTCC 50761 .......... .......... .......... .......... .......... .......... 99 AGCAAGTTTT TCAAATTTAA AAAAATGAGC TTCAAGTTGG AATGAAAAAT TGACTTATTA 50701 .......... .......... .......... .......... .......... .......... 99 TTGGACAAAT TTTGTTCTAT TATTTTGGGA AAAGGAAAAT GTTTTATTTG AAGTAGAAAT 50641 .......... .......... .......... .......... .......... .......... 99 TTTTGGGTTG ATTTACTCAA ATGTCCTTTT TTAAGTTTGT AAATTTTGTT TTTATTTTGA 50581 .......... .......... .......... .......... .......... .......... 99 TAAGTTGTGT ATTTGGGAAA TTACCTTTCA GACAAAAATA GATAGAGGTG TAATGTTTAA 50521 .......... .......... .......... .......... .......... .......... 99 GCATATATTA ACCAATGTTG CATACAAAAA AACTAGACTG TTGTTTAATG TTTGTAAAAA 50461 .......... .......... .......... .......... .......... .......... 99 TTTACAAATT TAAGTTTGTG ATTTAACATT TTCTCCTTAG ACTTTGTTGA AAGAGATCTT 50401 .......... .......... .......... .......... .......... .......... 99 TTAAGTTATG ATTTAAAAGG TATAGACGTT ACCAGAGAAT AAAAGAAAAT TACTTTTCAA 50341 .......... .......... .......... .......... .......... .......... 99 CACGAGAAGA TACAATCTTT TAACAACAGA GAACGATACA ATCTATCCAA ATATTGCATT 50281 .......... .......... .......... .......... .......... .......... 99 CATTAAAAAT ACATTATGAT ACAATAAAAT ACAATATAAT ATAATACAAT ACATTATGAA 50221 .......... .......... .......... .......... .......... .......... 99 ACAATACGTA ACAATCATCG GAACAAAATG TAATACAAGG GGCAAACGTG CATTTTTCCC 50161 .......... .......... .......... .......... .......... .......... 99 ATGAGTTGGG CCAATTTCTA ATAACCCACA TTTATTTAAG CCCAATTATA AATAGAGGTT 50101 .......... .......... .......... .......... .......... .......... 99 TATGTCTCTA TGCCTTTAAC CCTTCTCCTT GGTTGCTCTG TTCCAGCTGT TTGCTGTTTG 50041 .......... .......... .......... .......... .......... .......... 99 CTGTTTGAGG TCTCAACACT CGCTTAATCT CAGCTAAATA TAATTCAAAG CTGTAAAGGA 49981 .......... .......... .......... .......... .......... .......... 99 AACGAGAAAA CATCTAATTT AGGTATTTTT CTCCTCTTAA TCGTTGTTTT TCAAAGCTTA 49921 .......... .......... .......... .......... .......... .......... 99 TATGAGCTGG TTCTCTGTAG AAAAGTAAGT CTTTTTGATG GGAGTTCGTT ATTTTCCCAG 49861 .......... .......... .......... .......... .......... .......... 99 TTGGTTCTTC AACATGAGGT CTTTTTAACC CTTTATTTAC TTCTTTCATC ATGACATGAA 49801 .......... .......... .......... .......... .......... .......... 99 CTGGGTCTCC GTAAAAATCG AGTCTTGATG GAGTTTTAGT ATTTTGCTTG TTGTGAATTC 49741 .......... .......... .......... .......... .......... .......... 99 CCTTAGTTTC TTAATTGGCT CCTGAACATG AGGTTGTGTG ATTTTTCTGG GAAGTAATTG 49681 .......... .......... .......... .......... .......... .......... 99 GTTTGTTTTT CAATCATCAT TGTGGATAGT TTAGCGAAAA TGGAGGAAGA ATTTAATGCT 49621 .......... .......... .......... .......... .......... .......... 99 GGAAGGATCA AAGGCGCTGC TAAGAGGACT TTGCAAATTA CACCTCTTGA TGAGGAAGAT 49561 .......... .......... .......... .......... .......... .......... 99 CAAGAAGAGG TTCAAATTGA TGACAGTGGA GATGTTGATT CGTATGATGA TGATGATGAG 49501 .......... .......... .......... .......... .......... .......... 99 ACGGAGGAGG AGGATGAAGA CAAGGAACCT GTGGGATTAG GGGTTCTTGA AAAGCCTGAG 49441 .......... .......... .......... .......... .......... .......... 99 AATTCATGGT CACTGCTACG TGAGTTATTT CCAAGCAAAG CTGGGGGTAC TCCGGTATGG 49381 .......... .......... .......... .......... .......... .......... 99 TTAGAAAAGT TCTCTCGTTG AGTCGTTTCC GCTATCTTCC ATATTCATTA GGGTGAAAGA 49321 .......... .......... .......... .......... .......... .......... 99 CGCCTCCAAG GTTGATTGAG TTTTAAATTT TGTTTCTGTG AATGTAGGCT TGGTTGGATC 49261 | |||| || .......... .......... .......... .......... .......G-- GGGTTCGACT 110 CAATAAACTT 49251 ||||| ||| CAATATTCTT 120 hqPGS_C08HBa0320P23.1-_SGN-E352216- (51540 51457) ******************************************************************************** EST sequence 40 -strand 501 n (File: SGN-E353582-) 1 CAAGGCAAGA ATGCCACGAA TGGTGTTTAG CAACCTGAAG CAAATGTTTT CCCTATCTCT 61 AAAGGGGGCC CTTGGGCCAC TTGACTGTAA GGAAAGGGGT TCGACTCAAT ATTCTTGAAG 121 GAATCCTTTA GCTACTAATC TAGCCTTGTA TCTATCTACC GAGCCATCTG CTTTATGCTT 181 GATCTTGTAA ATCCACTTGC AGCCAATGGC TTCTTTCCCT GCAGGCAATG AGACTAAGTC 241 TTATTATTTT TTTCCTGGGC ATTGATTTCT TCCTGTATAG CATCTCTCCA GCAAGAATGA 301 TTGGAGGCTT CAGCAAATGA TTCAGGTTCA TGAGAAGATT GAACTGAGAT GAGGTAAGCT 361 CGATCTTTTG TTTTGGGGAA AACGATTCAT AAGCCTTCAA CAGGATAAGA AACTTGAGAG 421 GATCGACGAA GCTGAGAGCG GGATCCAGAA TTTTAGGAAG CGACTGGAAG GGAAGCAACT 481 GGGCTAGACT GCTGATCTTC T Predicted gene structure (within gDNA segment 52146 to 46647): Exon 1 51536 51457 ( 80 n); cDNA 1 80 ( 80 n); score: 1.000 Intron 1 51456 51221 ( 236 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 51220 51206 ( 15 n); cDNA 81 95 ( 15 n); score: 0.667 Intron 2 51205 49274 (1932 n); Pd: 0.900 (s: 0), Pa: 0.974 (s: 0) Exon 3 49273 49251 ( 23 n); cDNA 96 116 ( 21 n); score: 0.652 MATCH C08HBa0320P23.1- SGN-E353582- 1.000 118 0.236 C PGS_C08HBa0320P23.1-_SGN-E353582- (51536 51457,51220 51206,49273 49251) Alignment (genomic DNA sequence = upper lines): CAAGGCAAGA ATGCCACGAA TGGTGTTTAG CAACCTGAAG CAAATGTTTT CCCTATCTCT 51477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGCAAGA ATGCCACGAA TGGTGTTTAG CAACCTGAAG CAAATGTTTT CCCTATCTCT 60 AAAGGGGGCC CTTGGGCCAC CTCCAACACA ACTCATCTTC CCCGCTATTC CCATAACCTC 51417 |||||||||| |||||||||| AAAGGGGGCC CTTGGGCCAC .......... .......... .......... .......... 80 ATCCGCACAC CCGTACCTAC ACCCCAACCT TCCATAGTAT TTGTTTAGAC TATATACAAC 51357 .......... .......... .......... .......... .......... .......... 80 TGTTTTTACT TTTTAGGGTA ATGTATTTGC TTACATATCG AACACAAGAA AATAAGATGC 51297 .......... .......... .......... .......... .......... .......... 80 CCACTTATTT TTCTAGAAAA TTTTTTCCAT GAGTGTTTCC GTTTTAATTA GATTTGTAGC 51237 .......... .......... .......... .......... .......... .......... 80 TCAACCCCTG AAATATTTGA ATGTGATGCA GGTATCTTTC AGAGCAATCC AAGAAGAGAG 51177 |||| ||| | | | .......... ......TTGA CTGTAAGGAA A......... .......... .......... 95 ATGGTTAGCG TCGTACTGAT TCAGTTGGAA CTTAAATGTG GTGTTGTCGA TACGACAAGA 51117 .......... .......... .......... .......... .......... .......... 95 GGAAAAATTC ATTGTACTAA TGTTTGTGCA CTAGAATTCA AAGCTGTGAT GTAAAACTAG 51057 .......... .......... .......... .......... .......... .......... 95 ATGTTGTACA GCATTTCTGG TAGGTTGATT TTTCCAAATA TTGACAATAC AGTTGTTTTT 50997 .......... .......... .......... .......... .......... .......... 95 TCCCCTTTTT TGGGGGTGGG GTGGGGGTTC AAGTGTTGAG CTTCAGTTTT TTTCTTTCAC 50937 .......... .......... .......... .......... .......... .......... 95 CCTCACTGTA GGCGTTTGCA CATTAATTTG ATGATGTGTG AAAAATGAGA GTAGTATTTG 50877 .......... .......... .......... .......... .......... .......... 95 AAGTTAAATT GAATAGTGCA TTAGAAAATT GAAGTTGTGT TTGAAACGTG CAATTTACTT 50817 .......... .......... .......... .......... .......... .......... 95 TAGATTTTAT GAAGTTTTGT GAGGGAAATT AAATTATTTA CTTGAAAATG TGGTCCAGCA 50757 .......... .......... .......... .......... .......... .......... 95 AGTTTTTCAA ATTTAAAAAA ATGAGCTTCA AGTTGGAATG AAAAATTGAC TTATTATTGG 50697 .......... .......... .......... .......... .......... .......... 95 ACAAATTTTG TTCTATTATT TTGGGAAAAG GAAAATGTTT TATTTGAAGT AGAAATTTTT 50637 .......... .......... .......... .......... .......... .......... 95 GGGTTGATTT ACTCAAATGT CCTTTTTTAA GTTTGTAAAT TTTGTTTTTA TTTTGATAAG 50577 .......... .......... .......... .......... .......... .......... 95 TTGTGTATTT GGGAAATTAC CTTTCAGACA AAAATAGATA GAGGTGTAAT GTTTAAGCAT 50517 .......... .......... .......... .......... .......... .......... 95 ATATTAACCA ATGTTGCATA CAAAAAAACT AGACTGTTGT TTAATGTTTG TAAAAATTTA 50457 .......... .......... .......... .......... .......... .......... 95 CAAATTTAAG TTTGTGATTT AACATTTTCT CCTTAGACTT TGTTGAAAGA GATCTTTTAA 50397 .......... .......... .......... .......... .......... .......... 95 GTTATGATTT AAAAGGTATA GACGTTACCA GAGAATAAAA GAAAATTACT TTTCAACACG 50337 .......... .......... .......... .......... .......... .......... 95 AGAAGATACA ATCTTTTAAC AACAGAGAAC GATACAATCT ATCCAAATAT TGCATTCATT 50277 .......... .......... .......... .......... .......... .......... 95 AAAAATACAT TATGATACAA TAAAATACAA TATAATATAA TACAATACAT TATGAAACAA 50217 .......... .......... .......... .......... .......... .......... 95 TACGTAACAA TCATCGGAAC AAAATGTAAT ACAAGGGGCA AACGTGCATT TTTCCCATGA 50157 .......... .......... .......... .......... .......... .......... 95 GTTGGGCCAA TTTCTAATAA CCCACATTTA TTTAAGCCCA ATTATAAATA GAGGTTTATG 50097 .......... .......... .......... .......... .......... .......... 95 TCTCTATGCC TTTAACCCTT CTCCTTGGTT GCTCTGTTCC AGCTGTTTGC TGTTTGCTGT 50037 .......... .......... .......... .......... .......... .......... 95 TTGAGGTCTC AACACTCGCT TAATCTCAGC TAAATATAAT TCAAAGCTGT AAAGGAAACG 49977 .......... .......... .......... .......... .......... .......... 95 AGAAAACATC TAATTTAGGT ATTTTTCTCC TCTTAATCGT TGTTTTTCAA AGCTTATATG 49917 .......... .......... .......... .......... .......... .......... 95 AGCTGGTTCT CTGTAGAAAA GTAAGTCTTT TTGATGGGAG TTCGTTATTT TCCCAGTTGG 49857 .......... .......... .......... .......... .......... .......... 95 TTCTTCAACA TGAGGTCTTT TTAACCCTTT ATTTACTTCT TTCATCATGA CATGAACTGG 49797 .......... .......... .......... .......... .......... .......... 95 GTCTCCGTAA AAATCGAGTC TTGATGGAGT TTTAGTATTT TGCTTGTTGT GAATTCCCTT 49737 .......... .......... .......... .......... .......... .......... 95 AGTTTCTTAA TTGGCTCCTG AACATGAGGT TGTGTGATTT TTCTGGGAAG TAATTGGTTT 49677 .......... .......... .......... .......... .......... .......... 95 GTTTTTCAAT CATCATTGTG GATAGTTTAG CGAAAATGGA GGAAGAATTT AATGCTGGAA 49617 .......... .......... .......... .......... .......... .......... 95 GGATCAAAGG CGCTGCTAAG AGGACTTTGC AAATTACACC TCTTGATGAG GAAGATCAAG 49557 .......... .......... .......... .......... .......... .......... 95 AAGAGGTTCA AATTGATGAC AGTGGAGATG TTGATTCGTA TGATGATGAT GATGAGACGG 49497 .......... .......... .......... .......... .......... .......... 95 AGGAGGAGGA TGAAGACAAG GAACCTGTGG GATTAGGGGT TCTTGAAAAG CCTGAGAATT 49437 .......... .......... .......... .......... .......... .......... 95 CATGGTCACT GCTACGTGAG TTATTTCCAA GCAAAGCTGG GGGTACTCCG GTATGGTTAG 49377 .......... .......... .......... .......... .......... .......... 95 AAAAGTTCTC TCGTTGAGTC GTTTCCGCTA TCTTCCATAT TCATTAGGGT GAAAGACGCC 49317 .......... .......... .......... .......... .......... .......... 95 TCCAAGGTTG ATTGAGTTTT AAATTTTGTT TCTGTGAATG TAGGCTTGGT TGGATCCAAT 49257 | ||| | || |||| .......... .......... .......... .......... ...G--GGGT TCGACTCAAT 110 AAACTT 49251 | ||| ATTCTT 116 hqPGS_C08HBa0320P23.1-_SGN-E353582- (51536 51457) ******************************************************************************** EST sequence 86 +strand 704 n (File: SGN-E315835+) 1 TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 61 AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAGATTATGC ATAGTTTAGA AGCTAAAGTT 121 AGCAGCAAAG AGGAGAATGT GACAGCTCCT GATGACGGAA GCAATGAGCT GAAAAGCAAA 181 GGGGAGGGAG GTGATAACAG CAAACTTGCA CCAGATACCA CTACAGAAAT GGGGGATGCA 241 AGCAGCCTTC CACCAGTAAA AGAAAATTCC TCTTTTGAGG CAGTTCCTCC TCAAAACCAC 301 ACTGGTCAAC TGAATGAGCA AAACACCCAG TATAAGGCCA TAGAGAAGTG CAGTTCACAG 361 AGTTTAGAAG ATTACAACCA GTTACTCTAC AAATATTACG AACTTGAGGA TCAAAGGCAA 421 AAGATTTTGC AGCAACTTAA CCAGTTTGGC ATTTGGGGTG ATCAAAATTC TGGTTCTGCT 481 TCTCAAGAAC ATCAAGCTTA TGCATCACAT AATTTAAATC CAACAGAGTC TTCTTTCTAC 541 TGCCCATATG GATGCCAAAG TTGGGTATCT CCTTGCACTG CATCACCTTG TTGTTTGGGT 601 GTAAATGAGG ATGACAAACC ATGCGATGCG TCTATACGAT GTGTTCAAGA AAAAAAATCA 661 TCTCCCTCAA ACCCTAGTTT GGTTGATACA GCAAAAGAAG CTGC Predicted gene structure (within gDNA segment 57405 to 52730): Exon 1 56805 56713 ( 93 n); cDNA 1 93 ( 93 n); score: 1.000 Intron 1 56712 55040 (1673 n); Pd: 0.991 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 55039 54957 ( 83 n); cDNA 94 176 ( 83 n); score: 1.000 Intron 2 54956 53868 (1089 n); Pd: 0.977 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 53867 53340 ( 528 n); cDNA 177 704 ( 528 n); score: 0.994 MATCH C08HBa0320P23.1- SGN-E315835+ 0.996 704 1.000 C PGS_C08HBa0320P23.1-_SGN-E315835+ (56805 56713,55039 54957,53867 53340) Alignment (genomic DNA sequence = upper lines): TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 60 AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAGGTTCTTC CTTCACTCTA CGTTCTATGA 56686 |||||||||| |||||||||| |||||||||| ||| AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAG....... .......... .......... 93 AAACTCGTAC TTCCATTGCT CTTACTATTT CTATTTTTCA ACATCTTCAA ATGCATATCA 56626 .......... .......... .......... .......... .......... .......... 93 GCTGTATTTT CAATATTTGC TTTCAACGCA GTTCTGCTGA ACTTAGAATT GCTCGTCTTT 56566 .......... .......... .......... .......... .......... .......... 93 CTAGATGTAT TAGTAATCTA ATCATTTCAT ATGTATTTCT CTGTTTGGCG ATAATTTTTG 56506 .......... .......... .......... .......... .......... .......... 93 GACTTTGATT AGTATAATTT AGGTGAAAAA TGAAATTCAA ATGGAGTGGA ATGGGATAAT 56446 .......... .......... .......... .......... .......... .......... 93 AGCGGGTTCA TTAACCCGAA CAGTGTTGTA ATTGAGGGTA GCTGTTGTTT TAATATTATT 56386 .......... .......... .......... .......... .......... .......... 93 TTTGCAATTG TAATACTTTC TGGCTTCAAT TTAAGATATT CAGGAAGAAT ATTTAAGAAA 56326 .......... .......... .......... .......... .......... .......... 93 CCCCATTTTT TTGTTTTTCC TTGGACTACC AGCACGAAAT TGACCAGGCT ATAGAGTGTT 56266 .......... .......... .......... .......... .......... .......... 93 GATCCCATTG TATGTGGTCA ATAAGGAACA TGGTGCCATT TGGTCTTGAT TATAGTTGTT 56206 .......... .......... .......... .......... .......... .......... 93 TTCAGGTCAT CTTGTACGCA CTCGACTATT CAACCAAGTA ACTCATAATT CTGAGTCCTC 56146 .......... .......... .......... .......... .......... .......... 93 GACTAGCACA GGTGCGGGGT AACTCCCAAT CAAGGCGTCG GTATAATAGC AGCGTAGTTA 56086 .......... .......... .......... .......... .......... .......... 93 GTCTCTTTTA GGTTTAATTT TTTCACTTGA CAACTTTTGC TATTGGATTT TAGTCTTGAG 56026 .......... .......... .......... .......... .......... .......... 93 TAAACCTCTA GGCAGTTGGA CATTGTGAAG AGATTGGAAG CGTTAAGTTG GACATGAGAA 55966 .......... .......... .......... .......... .......... .......... 93 AATGATATTT ACATGAGGAC CCATCTTTTC TACTTTAATT GTGCCTTTCA TTTATTTGAC 55906 .......... .......... .......... .......... .......... .......... 93 TTTGGGTTCT AATATGTCAA GGGAATGATT TATGGTGTTT TTTGCTGCCA ATGTATCTGA 55846 .......... .......... .......... .......... .......... .......... 93 GATGACGGGG AAGAAAAGAA CAGAAGCGAT GTGGATTCCG TTATATTGTG TTTTAGGAGG 55786 .......... .......... .......... .......... .......... .......... 93 AGCACTAGAG AATTGTGTGG TGCTGGAATG AGGGAAAGGA GGGCTAAAGA GAGAAAAAGT 55726 .......... .......... .......... .......... .......... .......... 93 TGCTGCTTTC TGTTAGGGGA GGGAAGAAAG CATATCCTAC AATGTATGTA CCAGAGAGCA 55666 .......... .......... .......... .......... .......... .......... 93 ATATAAAGTT CTTTTGAAGT AATTTTTAGG TAAACTTTCA AGGATATAGT TCATTTAATT 55606 .......... .......... .......... .......... .......... .......... 93 TACCATGTCC TGCGTTTGAG GATGTTATGA GAGATGTTTT TGTCTTTATC TGAGTGCAAG 55546 .......... .......... .......... .......... .......... .......... 93 TAGAACTTTC CTGGGTGCAT CTTCCGACTT CCATTGTGCA GGCTATTTTC GTATGTGAAG 55486 .......... .......... .......... .......... .......... .......... 93 TTAGGTCTAC TAATTTCTTT TCTGTCGTTC TTACTTAAAA TTTTGTTGAA CTTGAATTTA 55426 .......... .......... .......... .......... .......... .......... 93 ATTTGTTTTT ATCTCTGGGA TACTGGATGC CTAGGTTGAA TGAAAGTATT GTGGCTCTCT 55366 .......... .......... .......... .......... .......... .......... 93 TTTCTCCCCC TTTTCTGTTC CTTCTTTTTC ACGATCATAA TTCTTGACAT CATTTTGATT 55306 .......... .......... .......... .......... .......... .......... 93 CCACTACTTC TCTGCATTGG CCATGATCTT TTGTCTCCTC CTAACTTCCC TAGCTTCCAT 55246 .......... .......... .......... .......... .......... .......... 93 ACAGCCTGCT TTTCTCTCAA ACCCTCCAAA TCAGTCTTCA TCCCGACCCC TTCCATAAAG 55186 .......... .......... .......... .......... .......... .......... 93 AGAGTAACTT AAGTCACAGC TGCTATTGCA CAGAGCTTAG AATCAAACAC AATACTTGTT 55126 .......... .......... .......... .......... .......... .......... 93 TACTGATTGT TATCATTTCT TACTCCTTTC CCCTTTCTAA GAAAATTTTA TATGTTTCTC 55066 .......... .......... .......... .......... .......... .......... 93 TTGATGTTCC TCTTTCCAAT TTCCAGATTA TGCATAGTTT AGAAGCTAAA GTTAGCAGCA 55006 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTA TGCATAGTTT AGAAGCTAAA GTTAGCAGCA 127 AAGAGGAGAA TGTGACAGCT CCTGATGACG GAAGCAATGA GCTGAAAAGG TCCATTTATG 54946 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGAGGAGAA TGTGACAGCT CCTGATGACG GAAGCAATGA GCTGAAAAG. .......... 176 ACTCAATTTG AGTGATATCT CTTTTTATTT CTTATATCGA GCTTAATGAT TAAAAATTAT 54886 .......... .......... .......... .......... .......... .......... 176 CATGAAGGAA ATGCTACCAG CTAAGAAGAC TTGGACATTT CTAGCTCTTA ATGAATTCAA 54826 .......... .......... .......... .......... .......... .......... 176 TTTTTAGACT CAAAATGAGT GATATTAAAT GGAAAAGTTT GTTATTTTCT AACTCTCAAT 54766 .......... .......... .......... .......... .......... .......... 176 GAATTCAATC TATGACTCTA AATGAGTGAT ATTAAATGAG TTTGAAAGGC CTATTCATCA 54706 .......... .......... .......... .......... .......... .......... 176 TTTGAATCAA CAGACATTTC TTTTTATCTC TTCTTTGAGC TTTTTAGTGT TGAAATGATA 54646 .......... .......... .......... .......... .......... .......... 176 ATGAATAGGA AATGCTACTA CTTGAAAAGA TTTGCACAAA TCTAGAGAAT TAGAAAAGTT 54586 .......... .......... .......... .......... .......... .......... 176 TGGTGTTCTC AAACTCTTTT TATTACGTAA TTCTCTTAAA TTGATGCATC TTGAGATGTC 54526 .......... .......... .......... .......... .......... .......... 176 TGCTTTATTC TGCTTGGGTT TCAACTTAGA GGTATGTTAA GCACTTTTAC TTTGCCTTTC 54466 .......... .......... .......... .......... .......... .......... 176 TAGTAGGGCT CTGATTAAAA TTCTTACATA TTCTGGTTGG TAGACTCATA GGTCAGATAT 54406 .......... .......... .......... .......... .......... .......... 176 CATCTTTCTG ATGATTTATC GTTGCAATAC GTTGTTTATA TGCCACAACT TCCCCTGTTG 54346 .......... .......... .......... .......... .......... .......... 176 ATTGCTTTAT TATTGAACTT TAACTTCCTC CCTGTATCCA CTTCTTCTAC TTTTTGTTTG 54286 .......... .......... .......... .......... .......... .......... 176 CTTCACATGT GCCAGCCTGG GCAGTAAATA TGCAGAGGTA CTTCTTCTGT CCCAGTTGTG 54226 .......... .......... .......... .......... .......... .......... 176 AAGGAGTTTG GAGTACTTGG GTCAAAACAC TTAATTTTTA CTATGAATAA ACTATACATA 54166 .......... .......... .......... .......... .......... .......... 176 TTTGAAAACT ATCCCTCATT TATGGGATTT CACTGGGTAT AATGTTGTAA AAACTTTATG 54106 .......... .......... .......... .......... .......... .......... 176 ACATACTACA AGTCAAATGT CAACATCTAA TGATTCAAAA TATTTTTAAA TATTTTTAAG 54046 .......... .......... .......... .......... .......... .......... 176 AATAGTCAAA GAAAAAACTG TTTTACTCCC CAAACCGTAA CACCTTTACA TAAAATGGGA 53986 .......... .......... .......... .......... .......... .......... 176 CTGAGAGAAT ACTTCTTGTG ATAAGCTTTT TCAAGTGACA TCAGGAAAAA CAATTAACTG 53926 .......... .......... .......... .......... .......... .......... 176 TCTGGAGACT GACGTTCTGC TTTATTTCTC TTTTTTGTTT TCACCTGTGT GGATGAAGCA 53866 || .......... .......... .......... .......... .......... ........CA 178 AAGGGGAGGG AGGTGATAAC AGCAAACTTG CACCAGATAC CACTACAGAA ATGGGGGATG 53806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGGAGGG AGGTGATAAC AGCAAACTTG CACCAGATAC CACTACAGAA ATGGGGGATG 238 CAAGCAGCCT TCCACCAGTA AAAGAAAATT CCTCTTTTGA GGCAGTTCCT CCTCAAAACC 53746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCAGCCT TCCACCAGTA AAAGAAAATT CCTCTTTTGA GGCAGTTCCT CCTCAAAACC 298 ACACTGGTCA ACTGAATGAG CAAAACACCC AGTATAAGGC CATAGAGAAG TGCAGTTCAC 53686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGGTCA ACTGAATGAG CAAAACACCC AGTATAAGGC CATAGAGAAG TGCAGTTCAC 358 AGAGTTTAGA AGATTACAAC CAGTTACTCT ACAAATATTA CGAACTTGAG GATCAAAGGC 53626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTTAGA AGATTACAAC CAGTTACTCT ACAAATATTA CGAACTTGAG GATCAAAGGC 418 AAAAGATTTT GCAGCAACTT AACCAGTTTG GCATTTGGGG TGATCAAAAT TCTGGTTCTG 53566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGATTTT GCAGCAACTT AACCAGTTTG GCATTTGGGG TGATCAAAAT TCTGGTTCTG 478 CTTCTCAAGA ACATCAAGCT TATGCATCAC ATAATTTAAA TCCAACAGAG TCTTCTTTCT 53506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTCAAGA ACATCAAGCT TATGCATCAC ATAATTTAAA TCCAACAGAG TCTTCTTTCT 538 ACTGCCCATA TGGATGCCAA AGTTGGGTAT CTCCTTGCAC TGCATCACCT TGTTGTTTGG 53446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCCCATA TGGATGCCAA AGTTGGGTAT CTCCTTGCAC TGCATCACCT TGTTGTTTGG 598 GTGTAAATGA GGATGACAAA CCATGCGATG CGTCTATACG ATGTGTTCAA GAAAAAAAAT 53386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTAAATGA GGATGACAAA CCATGCGATG CGTCTATACG ATGTGTTCAA GAAAAAAAAT 658 CATCTCCTCA AAACCCTAGT TTGGTTGATA CAGCAAAAGA AGCTGC 53340 ||||||| |||||||||| |||||||||| |||||||||| |||||| CATCTCCCTC AAACCCTAGT TTGGTTGATA CAGCAAAAGA AGCTGC 704 hqPGS_C08HBa0320P23.1-_SGN-E315835+ (56805 56713,55039 54957,53867 53340) ******************************************************************************** EST sequence 87 +strand 647 n (File: SGN-E315736+) 1 ATGGGGGAAA ACGATTTGTG GGACGATTCA GCCCTTGGTA ATGCGTTCAA CGATGCCGTA 61 TCCAAGTACA AGATTATGCA TAGTTTATAA GCTAAAGTTA GCAGCAAAGA GGAGAATGTG 121 ACAGCTCCTG ATGACGGAAG CAATGAGCTG AAAAGCAAAG GGGAGGGAGG TGATAACAGC 181 AAACTTGCAC CAGATACCAC TACAGAAATG GGGGATGCAA GCAGCCTTCC ACCAGTAGAA 241 GAGAATTCCT CTTTTGAGGC AGGTCCTCCT CATGACCACA CTGGTCAACT GAATGAGCAT 301 AACACCCAGT ATAAGGCCAT AGAGAAGTGC AGTTCACAGA GTTTAGAAGA TTACAACCAG 361 TTACTCTACA AATATTACGA ACTTGAGGAT CGAAGGCTGA AGATTTTGCG GCGACTTAGC 421 CAGTTTGGCA TTTGGGGTGA TCGAAATTCT GGTTCTGCTT CTCAAGAACA TCAAGCTTAT 481 GCATCACATA ATTTAAATCC AACAGAGTCT TCTTTCTACT GCCCATATGG ATGCCGAAGT 541 TGGGTATCTC CTTGCACTGC ATCACCTTGA TGTTTGGGTG TAAATGATGA TGACGAACCA 601 TGCGATGCGT CTATACTATG TGTTCAAGAG ACAAAATCAT CTCCTCA Predicted gene structure (within gDNA segment 57384 to 52487): Exon 1 56784 56713 ( 72 n); cDNA 1 72 ( 72 n); score: 0.986 Intron 1 56712 55040 (1673 n); Pd: 0.991 (s: 0.98), Pa: 0.962 (s: 0.98) Exon 2 55039 54957 ( 83 n); cDNA 73 155 ( 83 n); score: 0.988 Intron 2 54956 53868 (1089 n); Pd: 0.977 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 53867 53376 ( 492 n); cDNA 156 647 ( 492 n); score: 0.959 MATCH C08HBa0320P23.1- SGN-E315736+ 0.966 647 1.000 C PGS_C08HBa0320P23.1-_SGN-E315736+ (56784 56713,55039 54957,53867 53376) Alignment (genomic DNA sequence = upper lines): ATGGGGGAAA ACGATTTGTG GGACGATTCA GCCCTTGTTA ATGCGTTCAA CGATGCCGTA 56725 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATGGGGGAAA ACGATTTGTG GGACGATTCA GCCCTTGGTA ATGCGTTCAA CGATGCCGTA 60 TCCAAGTACA AGGTTCTTCC TTCACTCTAC GTTCTATGAA AACTCGTACT TCCATTGCTC 56665 |||||||||| || TCCAAGTACA AG........ .......... .......... .......... .......... 72 TTACTATTTC TATTTTTCAA CATCTTCAAA TGCATATCAG CTGTATTTTC AATATTTGCT 56605 .......... .......... .......... .......... .......... .......... 72 TTCAACGCAG TTCTGCTGAA CTTAGAATTG CTCGTCTTTC TAGATGTATT AGTAATCTAA 56545 .......... .......... .......... .......... .......... .......... 72 TCATTTCATA TGTATTTCTC TGTTTGGCGA TAATTTTTGG ACTTTGATTA GTATAATTTA 56485 .......... .......... .......... .......... .......... .......... 72 GGTGAAAAAT GAAATTCAAA TGGAGTGGAA TGGGATAATA GCGGGTTCAT TAACCCGAAC 56425 .......... .......... .......... .......... .......... .......... 72 AGTGTTGTAA TTGAGGGTAG CTGTTGTTTT AATATTATTT TTGCAATTGT AATACTTTCT 56365 .......... .......... .......... .......... .......... .......... 72 GGCTTCAATT TAAGATATTC AGGAAGAATA TTTAAGAAAC CCCATTTTTT TGTTTTTCCT 56305 .......... .......... .......... .......... .......... .......... 72 TGGACTACCA GCACGAAATT GACCAGGCTA TAGAGTGTTG ATCCCATTGT ATGTGGTCAA 56245 .......... .......... .......... .......... .......... .......... 72 TAAGGAACAT GGTGCCATTT GGTCTTGATT ATAGTTGTTT TCAGGTCATC TTGTACGCAC 56185 .......... .......... .......... .......... .......... .......... 72 TCGACTATTC AACCAAGTAA CTCATAATTC TGAGTCCTCG ACTAGCACAG GTGCGGGGTA 56125 .......... .......... .......... .......... .......... .......... 72 ACTCCCAATC AAGGCGTCGG TATAATAGCA GCGTAGTTAG TCTCTTTTAG GTTTAATTTT 56065 .......... .......... .......... .......... .......... .......... 72 TTCACTTGAC AACTTTTGCT ATTGGATTTT AGTCTTGAGT AAACCTCTAG GCAGTTGGAC 56005 .......... .......... .......... .......... .......... .......... 72 ATTGTGAAGA GATTGGAAGC GTTAAGTTGG ACATGAGAAA ATGATATTTA CATGAGGACC 55945 .......... .......... .......... .......... .......... .......... 72 CATCTTTTCT ACTTTAATTG TGCCTTTCAT TTATTTGACT TTGGGTTCTA ATATGTCAAG 55885 .......... .......... .......... .......... .......... .......... 72 GGAATGATTT ATGGTGTTTT TTGCTGCCAA TGTATCTGAG ATGACGGGGA AGAAAAGAAC 55825 .......... .......... .......... .......... .......... .......... 72 AGAAGCGATG TGGATTCCGT TATATTGTGT TTTAGGAGGA GCACTAGAGA ATTGTGTGGT 55765 .......... .......... .......... .......... .......... .......... 72 GCTGGAATGA GGGAAAGGAG GGCTAAAGAG AGAAAAAGTT GCTGCTTTCT GTTAGGGGAG 55705 .......... .......... .......... .......... .......... .......... 72 GGAAGAAAGC ATATCCTACA ATGTATGTAC CAGAGAGCAA TATAAAGTTC TTTTGAAGTA 55645 .......... .......... .......... .......... .......... .......... 72 ATTTTTAGGT AAACTTTCAA GGATATAGTT CATTTAATTT ACCATGTCCT GCGTTTGAGG 55585 .......... .......... .......... .......... .......... .......... 72 ATGTTATGAG AGATGTTTTT GTCTTTATCT GAGTGCAAGT AGAACTTTCC TGGGTGCATC 55525 .......... .......... .......... .......... .......... .......... 72 TTCCGACTTC CATTGTGCAG GCTATTTTCG TATGTGAAGT TAGGTCTACT AATTTCTTTT 55465 .......... .......... .......... .......... .......... .......... 72 CTGTCGTTCT TACTTAAAAT TTTGTTGAAC TTGAATTTAA TTTGTTTTTA TCTCTGGGAT 55405 .......... .......... .......... .......... .......... .......... 72 ACTGGATGCC TAGGTTGAAT GAAAGTATTG TGGCTCTCTT TTCTCCCCCT TTTCTGTTCC 55345 .......... .......... .......... .......... .......... .......... 72 TTCTTTTTCA CGATCATAAT TCTTGACATC ATTTTGATTC CACTACTTCT CTGCATTGGC 55285 .......... .......... .......... .......... .......... .......... 72 CATGATCTTT TGTCTCCTCC TAACTTCCCT AGCTTCCATA CAGCCTGCTT TTCTCTCAAA 55225 .......... .......... .......... .......... .......... .......... 72 CCCTCCAAAT CAGTCTTCAT CCCGACCCCT TCCATAAAGA GAGTAACTTA AGTCACAGCT 55165 .......... .......... .......... .......... .......... .......... 72 GCTATTGCAC AGAGCTTAGA ATCAAACACA ATACTTGTTT ACTGATTGTT ATCATTTCTT 55105 .......... .......... .......... .......... .......... .......... 72 ACTCCTTTCC CCTTTCTAAG AAAATTTTAT ATGTTTCTCT TGATGTTCCT CTTTCCAATT 55045 .......... .......... .......... .......... .......... .......... 72 TCCAGATTAT GCATAGTTTA GAAGCTAAAG TTAGCAGCAA AGAGGAGAAT GTGACAGCTC 54985 ||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| .....ATTAT GCATAGTTTA TAAGCTAAAG TTAGCAGCAA AGAGGAGAAT GTGACAGCTC 127 CTGATGACGG AAGCAATGAG CTGAAAAGGT CCATTTATGA CTCAATTTGA GTGATATCTC 54925 |||||||||| |||||||||| |||||||| CTGATGACGG AAGCAATGAG CTGAAAAG.. .......... .......... .......... 155 TTTTTATTTC TTATATCGAG CTTAATGATT AAAAATTATC ATGAAGGAAA TGCTACCAGC 54865 .......... .......... .......... .......... .......... .......... 155 TAAGAAGACT TGGACATTTC TAGCTCTTAA TGAATTCAAT TTTTAGACTC AAAATGAGTG 54805 .......... .......... .......... .......... .......... .......... 155 ATATTAAATG GAAAAGTTTG TTATTTTCTA ACTCTCAATG AATTCAATCT ATGACTCTAA 54745 .......... .......... .......... .......... .......... .......... 155 ATGAGTGATA TTAAATGAGT TTGAAAGGCC TATTCATCAT TTGAATCAAC AGACATTTCT 54685 .......... .......... .......... .......... .......... .......... 155 TTTTATCTCT TCTTTGAGCT TTTTAGTGTT GAAATGATAA TGAATAGGAA ATGCTACTAC 54625 .......... .......... .......... .......... .......... .......... 155 TTGAAAAGAT TTGCACAAAT CTAGAGAATT AGAAAAGTTT GGTGTTCTCA AACTCTTTTT 54565 .......... .......... .......... .......... .......... .......... 155 ATTACGTAAT TCTCTTAAAT TGATGCATCT TGAGATGTCT GCTTTATTCT GCTTGGGTTT 54505 .......... .......... .......... .......... .......... .......... 155 CAACTTAGAG GTATGTTAAG CACTTTTACT TTGCCTTTCT AGTAGGGCTC TGATTAAAAT 54445 .......... .......... .......... .......... .......... .......... 155 TCTTACATAT TCTGGTTGGT AGACTCATAG GTCAGATATC ATCTTTCTGA TGATTTATCG 54385 .......... .......... .......... .......... .......... .......... 155 TTGCAATACG TTGTTTATAT GCCACAACTT CCCCTGTTGA TTGCTTTATT ATTGAACTTT 54325 .......... .......... .......... .......... .......... .......... 155 AACTTCCTCC CTGTATCCAC TTCTTCTACT TTTTGTTTGC TTCACATGTG CCAGCCTGGG 54265 .......... .......... .......... .......... .......... .......... 155 CAGTAAATAT GCAGAGGTAC TTCTTCTGTC CCAGTTGTGA AGGAGTTTGG AGTACTTGGG 54205 .......... .......... .......... .......... .......... .......... 155 TCAAAACACT TAATTTTTAC TATGAATAAA CTATACATAT TTGAAAACTA TCCCTCATTT 54145 .......... .......... .......... .......... .......... .......... 155 ATGGGATTTC ACTGGGTATA ATGTTGTAAA AACTTTATGA CATACTACAA GTCAAATGTC 54085 .......... .......... .......... .......... .......... .......... 155 AACATCTAAT GATTCAAAAT ATTTTTAAAT ATTTTTAAGA ATAGTCAAAG AAAAAACTGT 54025 .......... .......... .......... .......... .......... .......... 155 TTTACTCCCC AAACCGTAAC ACCTTTACAT AAAATGGGAC TGAGAGAATA CTTCTTGTGA 53965 .......... .......... .......... .......... .......... .......... 155 TAAGCTTTTT CAAGTGACAT CAGGAAAAAC AATTAACTGT CTGGAGACTG ACGTTCTGCT 53905 .......... .......... .......... .......... .......... .......... 155 TTATTTCTCT TTTTTGTTTT CACCTGTGTG GATGAAGCAA AGGGGAGGGA GGTGATAACA 53845 ||| |||||||||| |||||||||| .......... .......... .......... .......CAA AGGGGAGGGA GGTGATAACA 178 GCAAACTTGC ACCAGATACC ACTACAGAAA TGGGGGATGC AAGCAGCCTT CCACCAGTAA 53785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCAAACTTGC ACCAGATACC ACTACAGAAA TGGGGGATGC AAGCAGCCTT CCACCAGTAG 238 AAGAAAATTC CTCTTTTGAG GCAGTTCCTC CTCAAAACCA CACTGGTCAA CTGAATGAGC 53725 |||| ||||| |||||||||| |||| ||||| |||| |||| |||||||||| |||||||||| AAGAGAATTC CTCTTTTGAG GCAGGTCCTC CTCATGACCA CACTGGTCAA CTGAATGAGC 298 AAAACACCCA GTATAAGGCC ATAGAGAAGT GCAGTTCACA GAGTTTAGAA GATTACAACC 53665 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACACCCA GTATAAGGCC ATAGAGAAGT GCAGTTCACA GAGTTTAGAA GATTACAACC 358 AGTTACTCTA CAAATATTAC GAACTTGAGG ATCAAAGGCA AAAGATTTTG CAGCAACTTA 53605 |||||||||| |||||||||| |||||||||| ||| ||||| ||||||||| | || ||||| AGTTACTCTA CAAATATTAC GAACTTGAGG ATCGAAGGCT GAAGATTTTG CGGCGACTTA 418 ACCAGTTTGG CATTTGGGGT GATCAAAATT CTGGTTCTGC TTCTCAAGAA CATCAAGCTT 53545 ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GCCAGTTTGG CATTTGGGGT GATCGAAATT CTGGTTCTGC TTCTCAAGAA CATCAAGCTT 478 ATGCATCACA TAATTTAAAT CCAACAGAGT CTTCTTTCTA CTGCCCATAT GGATGCCAAA 53485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ATGCATCACA TAATTTAAAT CCAACAGAGT CTTCTTTCTA CTGCCCATAT GGATGCCGAA 538 GTTGGGTATC TCCTTGCACT GCATCACCTT GTTGTTTGGG TGTAAATGAG GATGACAAAC 53425 |||||||||| |||||||||| |||||||||| | |||||||| ||||||||| |||||| ||| GTTGGGTATC TCCTTGCACT GCATCACCTT GATGTTTGGG TGTAAATGAT GATGACGAAC 598 CATGCGATGC GTCTATACGA TGTGTTCAAG AAAAAAAATC ATCTCCTCA 53376 |||||||||| |||||||| | |||||||||| | | |||||| ||||||||| CATGCGATGC GTCTATACTA TGTGTTCAAG AGACAAAATC ATCTCCTCA 647 hqPGS_C08HBa0320P23.1-_SGN-E315736+ (56784 56713,55039 54957,53867 53376) ******************************************************************************** EST sequence 62 +strand 529 n (File: SGN-E331183+) 1 TTTGCCGACC TCTCCTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 61 TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 121 ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 181 TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 241 TCGTTTGTTT CTCAGTTATC CCTGTATCCT TTGTTCTTTC TCCGAGACGA CGACAAAGAT 301 AAAGACGACG GCGTTTGATC TATGAAAGAG GAGGTGAATT AAATTAGCGC GTAAGTTACC 361 TTTGTACAAA GGGAAATTTG TTGACTTGAC ATCAACATTA TGGAGAGAAC GTGCTTCTAC 421 CGAGATGGCC ACTCATTGCA GAATTTGGTT TTGCATTTCG TTCTCCATGA TGCGGCTTCT 481 CAGAAATTTG TTATGACAGA CCTGTGCTAT ACTAGTTTAG GATTTAGTC Predicted gene structure (within gDNA segment 59022 to 62551): Exon 1 59622 59949 ( 328 n); cDNA 1 328 ( 328 n); score: 1.000 Intron 1 59950 61336 (1387 n); Pd: 0.997 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 61337 61455 ( 119 n); cDNA 329 447 ( 119 n); score: 1.000 Intron 2 61456 61859 ( 404 n); Pd: 0.823 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 61860 61941 ( 82 n); cDNA 448 529 ( 82 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E331183+ 1.000 529 1.000 C PGS_C08HBa0320P23.1+_SGN-E331183+ (59622 59949,61337 61455,61860 61941) Alignment (genomic DNA sequence = upper lines): TTTGCCGACC TCTCCTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 59681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCGACC TCTCCTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 60 TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 59741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 120 ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 59801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 180 TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 59861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 240 TCGTTTGTTT CTCAGTTATC CCTGTATCCT TTGTTCTTTC TCCGAGACGA CGACAAAGAT 59921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTTGTTT CTCAGTTATC CCTGTATCCT TTGTTCTTTC TCCGAGACGA CGACAAAGAT 300 AAAGACGACG GCGTTTGATC TATGAAAGGT ATATGTTAAA ACAGGGTAAA CAAGTTTTTT 59981 |||||||||| |||||||||| |||||||| AAAGACGACG GCGTTTGATC TATGAAAG.. .......... .......... .......... 328 TGTTTTTTTC TTTGGTTCAC TGCTTGGATC TGGACTGATT TGTATCGATT TGCGTTGTTT 60041 .......... .......... .......... .......... .......... .......... 328 TGGAAATGAT TTTACTAAAT ACGAAGTTTC CACGGTAGAT CGGCTCGGAA TTCATTTTTC 60101 .......... .......... .......... .......... .......... .......... 328 TGGATTTAAT TTGTAATAAA ATAAAATTTT CCGATTTTGT TTCTATTTAT GAGATTTTTT 60161 .......... .......... .......... .......... .......... .......... 328 TGATGTTTTT CTTGTTATAT AAATCATGAA AAATTGATTT TGCGGCGTCA TAAATTATTG 60221 .......... .......... .......... .......... .......... .......... 328 AAGTAGCAAG GTTGATTTTT TTTTTAATTT TCTAGCTAAG GAGAAGAAAA ATCGTTTTTT 60281 .......... .......... .......... .......... .......... .......... 328 TTTGAAGTTT TTTATCATTA CATAGATAAT GAAAATTATT TGAATATTGC TGGTTATTTT 60341 .......... .......... .......... .......... .......... .......... 328 CGGTGCGGTA TGATAAATTA TTGAAGTAGG AATTTTTTTA TTTATTTTCC AGTAAGTTTA 60401 .......... .......... .......... .......... .......... .......... 328 TTGAGGTTTT ATATAAACGA AGATAAGATT AAATTAAATA TTTTTACACT TGAGCGGAAT 60461 .......... .......... .......... .......... .......... .......... 328 ACTTGATTTG ATTATCAGTT CTTAATTAGA CATGCGGATT GTGTGTCCCA GTTGTTGAGA 60521 .......... .......... .......... .......... .......... .......... 328 AAACAATGAG AGGGATCTGA CTAATTAAAG GGGTACTTGA CCATATGGTG AATTTGCGCG 60581 .......... .......... .......... .......... .......... .......... 328 CATGTTTATA TTGAAGAATT GAAATATGAG AATAATGCTA ACTTTGTATA GCCATGAAAG 60641 .......... .......... .......... .......... .......... .......... 328 CTAGTTCGTA AATTGGCGAT ATCGGCACCT TGACATTTCC ACATGGTATT AAGTACATCC 60701 .......... .......... .......... .......... .......... .......... 328 TCAGTATCTT TCCAGTCAAG TAGGCGGCAT GTGAAGAAAT TAGCTGATTA GAATCTCTGT 60761 .......... .......... .......... .......... .......... .......... 328 CCCTCATAGT TCTACTCATA GTCTCTATCT TGGTGTTATC AATAGACAGG AGACTCCTAT 60821 .......... .......... .......... .......... .......... .......... 328 TTATACACTC AGCTAACGCT GTGCCAACTG CCTCTGAAAT ACAGAGGATA GGAGCGTTAT 60881 .......... .......... .......... .......... .......... .......... 328 CTTGAATGGT TAGGCGTGAG GCGCCAATAA TCAACAAGAA AGTTCTTACT GCCCAATTGT 60941 .......... .......... .......... .......... .......... .......... 328 ACACCCAATA ATTAACAAAA AAGTTCTTAC TGCCCAATTG TACACCCAAT AGAATAATAA 61001 .......... .......... .......... .......... .......... .......... 328 AAAAGTTGTA TGTATGTATG TATATATTTT GTGGGAGTTA CATGTTTGCT GATTATAAGT 61061 .......... .......... .......... .......... .......... .......... 328 TAATTCAAGA AGGTTTTAAA AACAAAAAGG TGTAAAACAC AAAAAGTTCA CATGGTTGTT 61121 .......... .......... .......... .......... .......... .......... 328 TCTCTGGTGT TTGTTCACGG TTGAATATTA GCTGAAGTTT TCAGAGCAAG TAAGAGATTT 61181 .......... .......... .......... .......... .......... .......... 328 AAGTGTAATG CTAATCTTTA TTTGTTTGCT AGAAAGATAG TGATAGACCT TAGTTCCTTT 61241 .......... .......... .......... .......... .......... .......... 328 TTTCTTTATT TATTTAATTT ATCTGGAAAT TTGGGTTTGG CATTTTTATG TGCATCTTTT 61301 .......... .......... .......... .......... .......... .......... 328 TGTCTTTCAA TGCTAACAAA AATTATGTTT TTCAGAGGAG GTGAATTAAA TTAGCGCGTA 61361 ||||| |||||||||| |||||||||| .......... .......... .......... .....AGGAG GTGAATTAAA TTAGCGCGTA 353 AGTTACCTTT GTACAAAGGG AAATTTGTTG ACTTGACATC AACATTATGG AGAGAACGTG 61421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCTTT GTACAAAGGG AAATTTGTTG ACTTGACATC AACATTATGG AGAGAACGTG 413 CTTCTACCGA GATGGCCACT CATTGCAGAA TTTGGTAGGT TTTTATAGGC TAGCTACATT 61481 |||||||||| |||||||||| |||||||||| |||| CTTCTACCGA GATGGCCACT CATTGCAGAA TTTG...... .......... .......... 447 CCATAAGCAT CAGAACAATT TACTGATTTT ACGGAGAGAT TCACTCTTAC AGGAAGTAAA 61541 .......... .......... .......... .......... .......... .......... 447 TAAATTTGGC ACATAGTTAT ATGCATTTAG GCATGAAATT CACTTCTATT TCACAAGAGT 61601 .......... .......... .......... .......... .......... .......... 447 GCGAAAAATA TGCATTTAGG CATGAAATTC ACTTCTATTT CACAAGAGTG CGAAAAATAT 61661 .......... .......... .......... .......... .......... .......... 447 TTCCTTTTGT TTCGCACACC AAAAAACATG AAATTTACTT CTATTGCTGG ATTCAGTTCA 61721 .......... .......... .......... .......... .......... .......... 447 GTTAGTGTTA GTTTACCTTA GCTATGTAAC TTTTAACTAT GACATGTTCT TTTATGCGAG 61781 .......... .......... .......... .......... .......... .......... 447 TATCGTTCTG CTCATATGAA GAAATCCTTA TCCATTTTTT TCGAATGAAT GACTTTCTAA 61841 .......... .......... .......... .......... .......... .......... 447 ATGTCTTTCT CCTGCCAGGT TTTGCATTTC GTTCTCCATG ATGCGGCTTC TCAGAAATTT 61901 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TTTGCATTTC GTTCTCCATG ATGCGGCTTC TCAGAAATTT 489 GTTATGACAG ACCTGTGCTA TACTAGTTTA GGATTTAGTC 61941 |||||||||| |||||||||| |||||||||| |||||||||| GTTATGACAG ACCTGTGCTA TACTAGTTTA GGATTTAGTC 529 hqPGS_C08HBa0320P23.1+_SGN-E331183+ (59622 59949,61337 61455,61860 61941) ******************************************************************************** EST sequence 1 +strand 734 n (File: SGN-E547185+) 1 CCGACCTCTC TTTCCTACCT TTTTCGCTGA AAAATATTAA TTTTATTTAT TTTCTTTCTT 61 TTCGCCCAAG TAACTTACAA TATTCAAAGT GTTGAATTTT TCTCACAAAC TATAAATGTT 121 ATCTTTATTA TTAATTATAA TAATAATAAT TTAGCTGATG AATTTCACAA GCTATTCAGT 181 GAATTCCATC TCCGTATCAA CGCCGTCGTC TCGAGATCTC CGTTGCTTTG TTTGATCGTT 241 TGCTTCTCAG TTATCTCTGT ATCCTTCGTT CTTTCTTCGA GACGACGACA AAGATAAAGA 301 CGACGGCGTT TGATCTATGA AAGAGGAGGT GAATTAAATT AGCGCGTAAG TTACCTTTGT 361 ACAAAGGGAA ATTTGTTGAC TTGACATCAA CATTATGGAG AGAACGTGCT TCTACCGAGA 421 TGGCCACTCA TTGCAGAATT TGGTTTTGCA TTTCGTTCTC CATGATGCGG CTTCTCAGAA 481 ATTTGTTATG ACAGACCTGT GCTATACTAG TTTAGGATTT AGTCTTTCTG TTAGAAACTT 541 GTAAATAGTA GTTGCCTGTA GATAAATGGA GTCAAACTGG GTTGAAGTGT TAGGTAATGA 601 CCGTAAGACA GCTGACGTCG ACTCAAAAAG TAAAGTAGCA TCTCAGTACG TGGCACGTAT 661 AGTTGGAGCT GGCACTGAGA AGCTGGAGGA GCTATCGTTT CAACCAAATT GTAGCTCATT 721 TTATAGCACG CTTG Predicted gene structure (within gDNA segment 58927 to 62761): Exon 1 59626 59949 ( 324 n); cDNA 1 323 ( 323 n); score: 0.981 Intron 1 59950 61336 (1387 n); Pd: 0.997 (s: 0.98), Pa: 0.918 (s: 1.00) Exon 2 61337 61455 ( 119 n); cDNA 324 442 ( 119 n); score: 1.000 Intron 2 61456 61859 ( 404 n); Pd: 0.823 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 61860 62151 ( 292 n); cDNA 443 734 ( 292 n); score: 0.983 MATCH C08HBa0320P23.1+ SGN-E547185+ 0.985 735 1.001 C PGS_C08HBa0320P23.1+_SGN-E547185+ (59626 59949,61337 61455,61860 62151) Alignment (genomic DNA sequence = upper lines): CCGACCTCTC CTTCCTACCT TTTTCGCTGA AAAATATTTA ATTTTATTTA TTTTCTTTCT 59685 |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CCGACCTCTC TTTCCTACCT TTTTCGCTGA AAAATAT-TA ATTTTATTTA TTTTCTTTCT 59 TTTCGCCCAA GTAACTTACA ATATTCAAAG TGTTGAATTT TTCTCACAAA CTATAAATGT 59745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGCCCAA GTAACTTACA ATATTCAAAG TGTTGAATTT TTCTCACAAA CTATAAATGT 119 TATCTTTATT ATTAATTATA ATAATAATAA TTTAGCTGAT GAATTTCACA AGCTATTCAG 59805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTTTATT ATTAATTATA ATAATAATAA TTTAGCTGAT GAATTTCACA AGCTATTCAG 179 TGAATTCCAT CTCCGTATCA ACGCCGTCGT CTCGAGATCT CCGTTGCTTT GTTTGATCGT 59865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTCCAT CTCCGTATCA ACGCCGTCGT CTCGAGATCT CCGTTGCTTT GTTTGATCGT 239 TTGTTTCTCA GTTATCCCTG TATCCTTTGT TCTTTCTCCG AGACGACGAC AAAGATAAAG 59925 ||| |||||| |||||| ||| ||||||| || ||||||| || |||||||||| |||||||||| TTGCTTCTCA GTTATCTCTG TATCCTTCGT TCTTTCTTCG AGACGACGAC AAAGATAAAG 299 ACGACGGCGT TTGATCTATG AAAGGTATAT GTTAAAACAG GGTAAACAAG TTTTTTTGTT 59985 |||||||||| |||||||||| |||| ACGACGGCGT TTGATCTATG AAAG...... .......... .......... .......... 323 TTTTTCTTTG GTTCACTGCT TGGATCTGGA CTGATTTGTA TCGATTTGCG TTGTTTTGGA 60045 .......... .......... .......... .......... .......... .......... 323 AATGATTTTA CTAAATACGA AGTTTCCACG GTAGATCGGC TCGGAATTCA TTTTTCTGGA 60105 .......... .......... .......... .......... .......... .......... 323 TTTAATTTGT AATAAAATAA AATTTTCCGA TTTTGTTTCT ATTTATGAGA TTTTTTTGAT 60165 .......... .......... .......... .......... .......... .......... 323 GTTTTTCTTG TTATATAAAT CATGAAAAAT TGATTTTGCG GCGTCATAAA TTATTGAAGT 60225 .......... .......... .......... .......... .......... .......... 323 AGCAAGGTTG ATTTTTTTTT TAATTTTCTA GCTAAGGAGA AGAAAAATCG TTTTTTTTTG 60285 .......... .......... .......... .......... .......... .......... 323 AAGTTTTTTA TCATTACATA GATAATGAAA ATTATTTGAA TATTGCTGGT TATTTTCGGT 60345 .......... .......... .......... .......... .......... .......... 323 GCGGTATGAT AAATTATTGA AGTAGGAATT TTTTTATTTA TTTTCCAGTA AGTTTATTGA 60405 .......... .......... .......... .......... .......... .......... 323 GGTTTTATAT AAACGAAGAT AAGATTAAAT TAAATATTTT TACACTTGAG CGGAATACTT 60465 .......... .......... .......... .......... .......... .......... 323 GATTTGATTA TCAGTTCTTA ATTAGACATG CGGATTGTGT GTCCCAGTTG TTGAGAAAAC 60525 .......... .......... .......... .......... .......... .......... 323 AATGAGAGGG ATCTGACTAA TTAAAGGGGT ACTTGACCAT ATGGTGAATT TGCGCGCATG 60585 .......... .......... .......... .......... .......... .......... 323 TTTATATTGA AGAATTGAAA TATGAGAATA ATGCTAACTT TGTATAGCCA TGAAAGCTAG 60645 .......... .......... .......... .......... .......... .......... 323 TTCGTAAATT GGCGATATCG GCACCTTGAC ATTTCCACAT GGTATTAAGT ACATCCTCAG 60705 .......... .......... .......... .......... .......... .......... 323 TATCTTTCCA GTCAAGTAGG CGGCATGTGA AGAAATTAGC TGATTAGAAT CTCTGTCCCT 60765 .......... .......... .......... .......... .......... .......... 323 CATAGTTCTA CTCATAGTCT CTATCTTGGT GTTATCAATA GACAGGAGAC TCCTATTTAT 60825 .......... .......... .......... .......... .......... .......... 323 ACACTCAGCT AACGCTGTGC CAACTGCCTC TGAAATACAG AGGATAGGAG CGTTATCTTG 60885 .......... .......... .......... .......... .......... .......... 323 AATGGTTAGG CGTGAGGCGC CAATAATCAA CAAGAAAGTT CTTACTGCCC AATTGTACAC 60945 .......... .......... .......... .......... .......... .......... 323 CCAATAATTA ACAAAAAAGT TCTTACTGCC CAATTGTACA CCCAATAGAA TAATAAAAAA 61005 .......... .......... .......... .......... .......... .......... 323 GTTGTATGTA TGTATGTATA TATTTTGTGG GAGTTACATG TTTGCTGATT ATAAGTTAAT 61065 .......... .......... .......... .......... .......... .......... 323 TCAAGAAGGT TTTAAAAACA AAAAGGTGTA AAACACAAAA AGTTCACATG GTTGTTTCTC 61125 .......... .......... .......... .......... .......... .......... 323 TGGTGTTTGT TCACGGTTGA ATATTAGCTG AAGTTTTCAG AGCAAGTAAG AGATTTAAGT 61185 .......... .......... .......... .......... .......... .......... 323 GTAATGCTAA TCTTTATTTG TTTGCTAGAA AGATAGTGAT AGACCTTAGT TCCTTTTTTC 61245 .......... .......... .......... .......... .......... .......... 323 TTTATTTATT TAATTTATCT GGAAATTTGG GTTTGGCATT TTTATGTGCA TCTTTTTGTC 61305 .......... .......... .......... .......... .......... .......... 323 TTTCAATGCT AACAAAAATT ATGTTTTTCA GAGGAGGTGA ATTAAATTAG CGCGTAAGTT 61365 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGAGGTGA ATTAAATTAG CGCGTAAGTT 352 ACCTTTGTAC AAAGGGAAAT TTGTTGACTT GACATCAACA TTATGGAGAG AACGTGCTTC 61425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTTGTAC AAAGGGAAAT TTGTTGACTT GACATCAACA TTATGGAGAG AACGTGCTTC 412 TACCGAGATG GCCACTCATT GCAGAATTTG GTAGGTTTTT ATAGGCTAGC TACATTCCAT 61485 |||||||||| |||||||||| |||||||||| TACCGAGATG GCCACTCATT GCAGAATTTG .......... .......... .......... 442 AAGCATCAGA ACAATTTACT GATTTTACGG AGAGATTCAC TCTTACAGGA AGTAAATAAA 61545 .......... .......... .......... .......... .......... .......... 442 TTTGGCACAT AGTTATATGC ATTTAGGCAT GAAATTCACT TCTATTTCAC AAGAGTGCGA 61605 .......... .......... .......... .......... .......... .......... 442 AAAATATGCA TTTAGGCATG AAATTCACTT CTATTTCACA AGAGTGCGAA AAATATTTCC 61665 .......... .......... .......... .......... .......... .......... 442 TTTTGTTTCG CACACCAAAA AACATGAAAT TTACTTCTAT TGCTGGATTC AGTTCAGTTA 61725 .......... .......... .......... .......... .......... .......... 442 GTGTTAGTTT ACCTTAGCTA TGTAACTTTT AACTATGACA TGTTCTTTTA TGCGAGTATC 61785 .......... .......... .......... .......... .......... .......... 442 GTTCTGCTCA TATGAAGAAA TCCTTATCCA TTTTTTTCGA ATGAATGACT TTCTAAATGT 61845 .......... .......... .......... .......... .......... .......... 442 CTTTCTCCTG CCAGGTTTTG CATTTCGTTC TCCATGATGC GGCTTCTCAG AAATTTGTTA 61905 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTTTTG CATTTCGTTC TCCATGATGC GGCTTCTCAG AAATTTGTTA 488 TGACAGACCT GTGCTATACT AGTTTAGGAT TTAGTCTTTC TGTTAGAAAT TTGTAAATAG 61965 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TGACAGACCT GTGCTATACT AGTTTAGGAT TTAGTCTTTC TGTTAGAAAC TTGTAAATAG 548 TAGTTGCCTG TAGATAAATG GAGTCAAACT GGGTTGAAGT GTTAGATAAT GACCGTAGGA 62025 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||| || TAGTTGCCTG TAGATAAATG GAGTCAAACT GGGTTGAAGT GTTAGGTAAT GACCGTAAGA 608 CAGCTGACGT CGACTCAAAA AGTAAAGTAG CGTCTCAGTA CGTGGCACGT ATAGTTGGAG 62085 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CAGCTGACGT CGACTCAAAA AGTAAAGTAG CATCTCAGTA CGTGGCACGT ATAGTTGGAG 668 CTGGCACTGA GAAGCTGGAG GAGCTATCAT TTCAACCAAA TTGTAGCTCA TTTTATAGCA 62145 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| CTGGCACTGA GAAGCTGGAG GAGCTATCGT TTCAACCAAA TTGTAGCTCA TTTTATAGCA 728 CGCTTG 62151 |||||| CGCTTG 734 hqPGS_C08HBa0320P23.1+_SGN-E547185+ (59626 59949,61337 61455,61860 62151) ******************************************************************************** EST sequence 44 +strand 689 n (File: SGN-E276865+) 1 TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 61 AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 121 AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 181 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 241 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 301 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 361 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 421 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 481 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 541 TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAGTGCC GCTAGCTGTG 601 ATATTGACGA AAATGGCATC CGTTACATGG TTCTTTGTCG TGTCATTTTG GGCAATGAAG 661 AACTTTTGCA TTTTGGCTCT CATCAATCT Predicted gene structure (within gDNA segment 61918 to 64268): Exon 1 62518 63103 ( 586 n); cDNA 1 586 ( 586 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 2 63556 63658 ( 103 n); cDNA 587 689 ( 103 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E276865+ 1.000 689 1.000 C PGS_C08HBa0320P23.1+_SGN-E276865+ (62518 63103,63556 63658) Alignment (genomic DNA sequence = upper lines): TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 62577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 60 AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 62637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 120 AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 62697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 180 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 62757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 240 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 62817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 300 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 62877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 360 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 62937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 420 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 62997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 480 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 63057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 540 TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAGGTTG GGTAATACTT 63117 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAG.... .......... 586 TGTAATGAGA AATCATTTTT ATTGATGATC TCATTATTGT TTGGAGTTCC AATATCATGA 63177 .......... .......... .......... .......... .......... .......... 586 TCTAGAATGG GTTTTAAATT TATCCAGTTG CTTAGTGGAG ATCATTGATC ATTGTGATGA 63237 .......... .......... .......... .......... .......... .......... 586 TGCAGTTCAA ATATTTTTAC TGTGCTCCTC CTATAACTGC GGGTGGGGGT GGGGGTGGGG 63297 .......... .......... .......... .......... .......... .......... 586 TCAGGAAATA AAAAGGGGAA AGAATATCTT AAAAGTACAC AATGCTGTGT TCTGAACACA 63357 .......... .......... .......... .......... .......... .......... 586 TTTGGTTGTG GTTATGATAT CATCTCCTGA TATTTAATGA AAACATCCCC CCTCCCCCTT 63417 .......... .......... .......... .......... .......... .......... 586 AAAAAAAATA GAAAAAATGA AAGAAACAAT AATTTTGTCA AAACAAAAAT AAAAATTATA 63477 .......... .......... .......... .......... .......... .......... 586 ATTGTCCTCT GTATTCCACT GATCTTATCT TTCAGGAGGA TCTAACTTCA GTTTCACTTT 63537 .......... .......... .......... .......... .......... .......... 586 TTTTTGTCTC TTCATCAGTG CCGCTAGCTG TGATATTGAC GAAAATGGCA TCCGTTACAT 63597 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TG CCGCTAGCTG TGATATTGAC GAAAATGGCA TCCGTTACAT 628 GGTTCTTTGT CGTGTCATTT TGGGCAATGA AGAACTTTTG CATTTTGGCT CTCATCAATC 63657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCTTTGT CGTGTCATTT TGGGCAATGA AGAACTTTTG CATTTTGGCT CTCATCAATC 688 T 63658 | T 689 hqPGS_C08HBa0320P23.1+_SGN-E276865+ (62518 63103,63556 63658) ******************************************************************************** EST sequence 43 +strand 545 n (File: SGN-E247433+) 1 TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 61 ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 121 ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 181 TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 241 TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 301 GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 361 ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 421 CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 481 GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGTGC CGCTAGCTGT GATATTGACG 541 AAAAT Predicted gene structure (within gDNA segment 61987 to 64193): Exon 1 62587 63103 ( 517 n); cDNA 1 517 ( 517 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 0) Exon 2 63556 63583 ( 28 n); cDNA 518 545 ( 28 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E247433+ 1.000 545 1.000 C PGS_C08HBa0320P23.1+_SGN-E247433+ (62587 63103,63556 63583) Alignment (genomic DNA sequence = upper lines): TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 62646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 60 ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 62706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 120 ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 62766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 180 TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 62826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 240 TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 62886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 300 GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 62946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 360 ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 63006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 420 CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 63066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 480 GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGGTT GGGTAATACT TTGTAATGAG 63126 |||||||||| |||||||||| |||||||||| ||||||| GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAG... .......... .......... 517 AAATCATTTT TATTGATGAT CTCATTATTG TTTGGAGTTC CAATATCATG ATCTAGAATG 63186 .......... .......... .......... .......... .......... .......... 517 GGTTTTAAAT TTATCCAGTT GCTTAGTGGA GATCATTGAT CATTGTGATG ATGCAGTTCA 63246 .......... .......... .......... .......... .......... .......... 517 AATATTTTTA CTGTGCTCCT CCTATAACTG CGGGTGGGGG TGGGGGTGGG GTCAGGAAAT 63306 .......... .......... .......... .......... .......... .......... 517 AAAAAGGGGA AAGAATATCT TAAAAGTACA CAATGCTGTG TTCTGAACAC ATTTGGTTGT 63366 .......... .......... .......... .......... .......... .......... 517 GGTTATGATA TCATCTCCTG ATATTTAATG AAAACATCCC CCCTCCCCCT TAAAAAAAAT 63426 .......... .......... .......... .......... .......... .......... 517 AGAAAAAATG AAAGAAACAA TAATTTTGTC AAAACAAAAA TAAAAATTAT AATTGTCCTC 63486 .......... .......... .......... .......... .......... .......... 517 TGTATTCCAC TGATCTTATC TTTCAGGAGG ATCTAACTTC AGTTTCACTT TTTTTTGTCT 63546 .......... .......... .......... .......... .......... .......... 517 CTTCATCAGT GCCGCTAGCT GTGATATTGA CGAAAAT 63583 | |||||||||| |||||||||| ||||||| .........T GCCGCTAGCT GTGATATTGA CGAAAAT 545 hqPGS_C08HBa0320P23.1+_SGN-E247433+ (62587 63103,63556 63583) ******************************************************************************** EST sequence 41 +strand 544 n (File: SGN-E247457+) 1 TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 61 ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 121 ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 181 TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 241 TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 301 GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 361 ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 421 CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 481 GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGTGC CGCTAGCTGT GATATTGACG 541 AAAA Predicted gene structure (within gDNA segment 61987 to 63983): Exon 1 62587 63103 ( 517 n); cDNA 1 517 ( 517 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 0) Exon 2 63556 63582 ( 27 n); cDNA 518 544 ( 27 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E247457+ 1.000 544 1.000 C PGS_C08HBa0320P23.1+_SGN-E247457+ (62587 63103,63556 63582) Alignment (genomic DNA sequence = upper lines): TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 62646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATAGA TATTAATGGA CCGAACAATT GCAAATTGGA TGAAGGTATG GAAGAGTCAA 60 ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 62706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCCGTGT TAAAAGGATT AAAGTCGATC CTTTAAAAGA TAATCAACAA TTTGCTGTTG 120 ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 62766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAAATC ATATCCTAAA ATGGAAGTAG TGGCAGAAAA TCAACAGGAT CAGGAAAGTC 180 TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 62826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTCCTAT ATTAGAAGAT ACACTTAAGT TGGTGGATGC AGAATCGGTT AAAACTATGT 240 TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 62886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT CAAAATTAGT CAATGCTCAA 300 GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 62946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA GGCTGAGATA ACTCAAAAGT 360 ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 63006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC TTCCAAAGAG GTAGTATCTA 420 CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 63066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA GAAGACTAAG CTTGGTGTTG 480 GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGGTT GGGTAATACT TTGTAATGAG 63126 |||||||||| |||||||||| |||||||||| ||||||| GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAG... .......... .......... 517 AAATCATTTT TATTGATGAT CTCATTATTG TTTGGAGTTC CAATATCATG ATCTAGAATG 63186 .......... .......... .......... .......... .......... .......... 517 GGTTTTAAAT TTATCCAGTT GCTTAGTGGA GATCATTGAT CATTGTGATG ATGCAGTTCA 63246 .......... .......... .......... .......... .......... .......... 517 AATATTTTTA CTGTGCTCCT CCTATAACTG CGGGTGGGGG TGGGGGTGGG GTCAGGAAAT 63306 .......... .......... .......... .......... .......... .......... 517 AAAAAGGGGA AAGAATATCT TAAAAGTACA CAATGCTGTG TTCTGAACAC ATTTGGTTGT 63366 .......... .......... .......... .......... .......... .......... 517 GGTTATGATA TCATCTCCTG ATATTTAATG AAAACATCCC CCCTCCCCCT TAAAAAAAAT 63426 .......... .......... .......... .......... .......... .......... 517 AGAAAAAATG AAAGAAACAA TAATTTTGTC AAAACAAAAA TAAAAATTAT AATTGTCCTC 63486 .......... .......... .......... .......... .......... .......... 517 TGTATTCCAC TGATCTTATC TTTCAGGAGG ATCTAACTTC AGTTTCACTT TTTTTTGTCT 63546 .......... .......... .......... .......... .......... .......... 517 CTTCATCAGT GCCGCTAGCT GTGATATTGA CGAAAA 63582 | |||||||||| |||||||||| |||||| .........T GCCGCTAGCT GTGATATTGA CGAAAA 544 hqPGS_C08HBa0320P23.1+_SGN-E247457+ (62587 63103,63556 63582) ******************************************************************************** EST sequence 28 +strand 499 n (File: SGN-E323530+) 1 AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 61 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 121 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 181 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 241 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 301 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 361 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 421 TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAGTGCC GCTAGCTGTG 481 ATATTGACGA AAATGGCAT Predicted gene structure (within gDNA segment 62038 to 64198): Exon 1 62638 63103 ( 466 n); cDNA 1 466 ( 466 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 0) Exon 2 63556 63588 ( 33 n); cDNA 467 499 ( 33 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E323530+ 1.000 499 1.000 C PGS_C08HBa0320P23.1+_SGN-E323530+ (62638 63103,63556 63588) Alignment (genomic DNA sequence = upper lines): AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 62697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 60 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 62757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 120 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 62817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 180 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 62877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 240 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 62937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 300 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 62997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 360 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 63057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGGGGC CTGTGGACAG AAGACTAAGC 420 TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAGGTTG GGTAATACTT 63117 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGGTGTTGG AGTGCACCTC ATTGCCCAGG ACTGTGCCTC TAAAAG.... .......... 466 TGTAATGAGA AATCATTTTT ATTGATGATC TCATTATTGT TTGGAGTTCC AATATCATGA 63177 .......... .......... .......... .......... .......... .......... 466 TCTAGAATGG GTTTTAAATT TATCCAGTTG CTTAGTGGAG ATCATTGATC ATTGTGATGA 63237 .......... .......... .......... .......... .......... .......... 466 TGCAGTTCAA ATATTTTTAC TGTGCTCCTC CTATAACTGC GGGTGGGGGT GGGGGTGGGG 63297 .......... .......... .......... .......... .......... .......... 466 TCAGGAAATA AAAAGGGGAA AGAATATCTT AAAAGTACAC AATGCTGTGT TCTGAACACA 63357 .......... .......... .......... .......... .......... .......... 466 TTTGGTTGTG GTTATGATAT CATCTCCTGA TATTTAATGA AAACATCCCC CCTCCCCCTT 63417 .......... .......... .......... .......... .......... .......... 466 AAAAAAAATA GAAAAAATGA AAGAAACAAT AATTTTGTCA AAACAAAAAT AAAAATTATA 63477 .......... .......... .......... .......... .......... .......... 466 ATTGTCCTCT GTATTCCACT GATCTTATCT TTCAGGAGGA TCTAACTTCA GTTTCACTTT 63537 .......... .......... .......... .......... .......... .......... 466 TTTTTGTCTC TTCATCAGTG CCGCTAGCTG TGATATTGAC GAAAATGGCA T 63588 || |||||||||| |||||||||| |||||||||| | .......... ........TG CCGCTAGCTG TGATATTGAC GAAAATGGCA T 499 hqPGS_C08HBa0320P23.1+_SGN-E323530+ (62638 63103,63556 63588) ******************************************************************************** EST sequence 26 +strand 574 n (File: SGN-E255204+) 1 AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 61 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 121 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 181 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 241 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGTGC 301 CGCTAGCTGT GATATTGACG AAAATGGCAT CCGTTACATG GTTCTTTGTC GTGTCATTTT 361 GGGCAATGAA GAACTTTTGC ATTTTGGCTC TCATCAATCT TATCCAAGCA ATGAGAGATA 421 TGATAGTGGT GTTGATGATC TCGAGAGTCC TACTCACTAT ACTGTTTGGA ACATGAATAT 481 GAATACACAC ATATATCCTG AATATGTCGT GAGCTTCAGG ATGTCTTCAG GAGCAGAAGG 541 GGCTCCAATA AAGGAAGAAA GTCGGCTTGA TGTC Predicted gene structure (within gDNA segment 62207 to 65619): Exon 1 62807 63103 ( 297 n); cDNA 1 297 ( 297 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 2 63556 63797 ( 242 n); cDNA 298 539 ( 242 n); score: 1.000 Intron 2 63798 64974 (1177 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 0) Exon 3 64975 65009 ( 35 n); cDNA 540 574 ( 35 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E255204+ 1.000 574 1.000 C PGS_C08HBa0320P23.1+_SGN-E255204+ (62807 63103,63556 63797,64975 65009) Alignment (genomic DNA sequence = upper lines): AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 62866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 60 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 62926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 120 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 62986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 180 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 63046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 240 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGGTT 63106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAG... 297 GGGTAATACT TTGTAATGAG AAATCATTTT TATTGATGAT CTCATTATTG TTTGGAGTTC 63166 .......... .......... .......... .......... .......... .......... 297 CAATATCATG ATCTAGAATG GGTTTTAAAT TTATCCAGTT GCTTAGTGGA GATCATTGAT 63226 .......... .......... .......... .......... .......... .......... 297 CATTGTGATG ATGCAGTTCA AATATTTTTA CTGTGCTCCT CCTATAACTG CGGGTGGGGG 63286 .......... .......... .......... .......... .......... .......... 297 TGGGGGTGGG GTCAGGAAAT AAAAAGGGGA AAGAATATCT TAAAAGTACA CAATGCTGTG 63346 .......... .......... .......... .......... .......... .......... 297 TTCTGAACAC ATTTGGTTGT GGTTATGATA TCATCTCCTG ATATTTAATG AAAACATCCC 63406 .......... .......... .......... .......... .......... .......... 297 CCCTCCCCCT TAAAAAAAAT AGAAAAAATG AAAGAAACAA TAATTTTGTC AAAACAAAAA 63466 .......... .......... .......... .......... .......... .......... 297 TAAAAATTAT AATTGTCCTC TGTATTCCAC TGATCTTATC TTTCAGGAGG ATCTAACTTC 63526 .......... .......... .......... .......... .......... .......... 297 AGTTTCACTT TTTTTTGTCT CTTCATCAGT GCCGCTAGCT GTGATATTGA CGAAAATGGC 63586 | |||||||||| |||||||||| |||||||||| .......... .......... .........T GCCGCTAGCT GTGATATTGA CGAAAATGGC 328 ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 63646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 388 TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 63706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 448 CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 63766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 508 GTGAGCTTCA GGATGTCTTC AGGAGCAGAA GGTGTCTTAT TTATCTCGTT TTCCTTACAT 63826 |||||||||| |||||||||| |||||||||| | GTGAGCTTCA GGATGTCTTC AGGAGCAGAA G......... .......... .......... 539 TTAAATGTCA GAATATCATG ATTAGTATGA AATTAAATAG TGTGTTGATT ACCCTGAGTA 63886 .......... .......... .......... .......... .......... .......... 539 TGTCTCATCT TCCCTTAAAG AGAAACTGCA GCATTTCCTC TTTGCTATTT TTAATATTGC 63946 .......... .......... .......... .......... .......... .......... 539 AGTACTTTAG ACTTCCAAAG TAAAAGAGTA TTTAGTTCAC GTTTTATCTC TGAAATCAGT 64006 .......... .......... .......... .......... .......... .......... 539 CAAATATTAT CTGTTAATTC TACATCCTTA AAAATACAAT TACTATTTTT GATCAACTAA 64066 .......... .......... .......... .......... .......... .......... 539 CACAAGAATT TGGATGTGCA CCGCTTTGGA GATCATGTCA TGTGTTACTA CTTCTCCTAC 64126 .......... .......... .......... .......... .......... .......... 539 TATTTAAAGA TGGGATTTTG GGATATTTGC TGCTAGAGAA AAGTTTTGAA CACAGAAGTT 64186 .......... .......... .......... .......... .......... .......... 539 GGCTCTGGTT TTGAATACTT GTAATGATTA TTATGACGTG CAAGACTATT GTTTTGTATT 64246 .......... .......... .......... .......... .......... .......... 539 TGTGAAGTAA ATAGCTTTGT AACTTTCTTA AAAATTTCAG GTTGTGTTGT CACTTTCCGC 64306 .......... .......... .......... .......... .......... .......... 539 ACAATTAATG TTGAGGATTC GGGTCACTGT GACAATGACA CGTTTCTTAG CCTCGTTATG 64366 .......... .......... .......... .......... .......... .......... 539 TGATTGTTCT ATTTCTAGTG CCTCACATTG AAGGATCTTG ATCTAAACTA TTTATGAACC 64426 .......... .......... .......... .......... .......... .......... 539 GAGGGTCATC ATTATTATAT TTTGTTTGAC TTCCTTTTTT AGATTTTCAA AATGTAATCG 64486 .......... .......... .......... .......... .......... .......... 539 CAACTGCTGA AGGCAGCATT TAATGGAACA TTGCTTGGAA TCCGTAGATT AATTTGTTTG 64546 .......... .......... .......... .......... .......... .......... 539 GCGTCTTCTT TAGATAATTG GGCTTGATAG TCCACTGTTA AGAAGTTTGT GGGACTTTGG 64606 .......... .......... .......... .......... .......... .......... 539 CGTACATTGT TGATATTTTT TGGGCTTTTG GAGGACATTA AGCACGATGG CACTAGCTAT 64666 .......... .......... .......... .......... .......... .......... 539 TTAGTTGCAG GATGACTTTT TTTTTTTTTA TACATAGGGA CTTTCATATC ATTATGGAGA 64726 .......... .......... .......... .......... .......... .......... 539 ATGTTCTAGA GTAAGACTAA CTTACCAATG ATTAAAAGAG GGAAACTTGC AATCATAATA 64786 .......... .......... .......... .......... .......... .......... 539 CACTGCTCAA AGGTATTTTT GATGTAGAGA GATAAAGGTG TTCCACCTAT TTAGAGCATG 64846 .......... .......... .......... .......... .......... .......... 539 ACGTATTGAT TTATTTATCC AAGGCGTAAA AAGAACATTT ATGCCGATTT AATGTGCCAT 64906 .......... .......... .......... .......... .......... .......... 539 TCAGTAATTG TACTTCTCAA ATTACTTAAT TACCACTCAC TGATGGTTAG TTTGTATTTT 64966 .......... .......... .......... .......... .......... .......... 539 ATTTCCAGGG GCTCCAATAA AGGAAGAAAG TCGGCTTGAT GTC 65009 || |||||||||| |||||||||| |||||||||| ||| ........GG GCTCCAATAA AGGAAGAAAG TCGGCTTGAT GTC 574 hqPGS_C08HBa0320P23.1+_SGN-E255204+ (62807 63103,63556 63797,64975 65009) ******************************************************************************** EST sequence 14 +strand 551 n (File: SGN-E262724+) 1 AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 61 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 121 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 181 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 241 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGTGC 301 CGCTAGCTGT GATATTGACG AAAATGGCAT CCGTTACATG GTTCTTTGTC GTGTCATTTT 361 GGGCAATGAA GAACTTTTGC ATTTTGGCTC TCATCAATCT TATCCAAGCA ATGAGAGATA 421 TGATAGTGGT GTTGATGATC TCGAGAGTCC TACTCACTAT ACTGTTTGGA ACATGAATAT 481 GAATACACAC ATATATCCTG AATATGTCGT GAGCTTCAGG ATGTCTTCAG GAGCAGAAGG 541 GGCTCCAATA A Predicted gene structure (within gDNA segment 62207 to 64518): Exon 1 62807 63103 ( 297 n); cDNA 1 297 ( 297 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 2 63556 63797 ( 242 n); cDNA 298 539 ( 242 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E262724+ 1.000 539 0.978 C PGS_C08HBa0320P23.1+_SGN-E262724+ (62807 63103,63556 63797) Alignment (genomic DNA sequence = upper lines): AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 62866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 60 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 62926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 120 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 62986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 180 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 63046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 240 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGGTT 63106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAG... 297 GGGTAATACT TTGTAATGAG AAATCATTTT TATTGATGAT CTCATTATTG TTTGGAGTTC 63166 .......... .......... .......... .......... .......... .......... 297 CAATATCATG ATCTAGAATG GGTTTTAAAT TTATCCAGTT GCTTAGTGGA GATCATTGAT 63226 .......... .......... .......... .......... .......... .......... 297 CATTGTGATG ATGCAGTTCA AATATTTTTA CTGTGCTCCT CCTATAACTG CGGGTGGGGG 63286 .......... .......... .......... .......... .......... .......... 297 TGGGGGTGGG GTCAGGAAAT AAAAAGGGGA AAGAATATCT TAAAAGTACA CAATGCTGTG 63346 .......... .......... .......... .......... .......... .......... 297 TTCTGAACAC ATTTGGTTGT GGTTATGATA TCATCTCCTG ATATTTAATG AAAACATCCC 63406 .......... .......... .......... .......... .......... .......... 297 CCCTCCCCCT TAAAAAAAAT AGAAAAAATG AAAGAAACAA TAATTTTGTC AAAACAAAAA 63466 .......... .......... .......... .......... .......... .......... 297 TAAAAATTAT AATTGTCCTC TGTATTCCAC TGATCTTATC TTTCAGGAGG ATCTAACTTC 63526 .......... .......... .......... .......... .......... .......... 297 AGTTTCACTT TTTTTTGTCT CTTCATCAGT GCCGCTAGCT GTGATATTGA CGAAAATGGC 63586 | |||||||||| |||||||||| |||||||||| .......... .......... .........T GCCGCTAGCT GTGATATTGA CGAAAATGGC 328 ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 63646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 388 TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 63706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 448 CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 63766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 508 GTGAGCTTCA GGATGTCTTC AGGAGCAGAA G 63797 |||||||||| |||||||||| |||||||||| | GTGAGCTTCA GGATGTCTTC AGGAGCAGAA G 539 hqPGS_C08HBa0320P23.1+_SGN-E262724+ (62807 63103,63556 63797) ******************************************************************************** EST sequence 45 +strand 515 n (File: SGN-E259010+) 1 AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 61 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 121 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 181 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 241 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGTGC 301 CGCTAGCTGT GATATTGACG AAAATGGCAT CCGTTACATG GTTCTTTGTC GTGTCATTTT 361 GGGCAATGAA GAACTTTTGC ATTTTGGCTC TCATCAATCT TATCCAAGCA ATGAGAGATA 421 TGATAGTGGT GTTGATGATC TCGAGAGTCC TACTCACTAT ACTGTTTGGA ACATGAATAT 481 GAATACACAC ATATATCCTG AATATGTCGT GAGCT Predicted gene structure (within gDNA segment 62207 to 64383): Exon 1 62807 63103 ( 297 n); cDNA 1 297 ( 297 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 2 63556 63773 ( 218 n); cDNA 298 515 ( 218 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E259010+ 1.000 515 1.000 C PGS_C08HBa0320P23.1+_SGN-E259010+ (62807 63103,63556 63773) Alignment (genomic DNA sequence = upper lines): AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 62866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGGTT AAAACTATGT TTGTTAAGGG AATGAATACC ATCTATATGG TGGATATAGT 60 CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 62926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATTAGT CAATGCTCAA GTAAATATAT GAGAAATCGC TTGGAACTGT TTGAGAAGCA 120 GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 62986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGATA ACTCAAAAGT ATCGTGGGAA ATCCAATGTT CGGCATGCTT GGCTTGCCGC 180 TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 63046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAAGAG GTAGTATCTA CAATTATGAA CTATGGGCTT ATGCATGGGG CCTGTGGACA 240 GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAGGTT 63106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAAGACTAAG CTTGGTGTTG GAGTGCACCT CATTGCCCAG GACTGTGCCT CTAAAAG... 297 GGGTAATACT TTGTAATGAG AAATCATTTT TATTGATGAT CTCATTATTG TTTGGAGTTC 63166 .......... .......... .......... .......... .......... .......... 297 CAATATCATG ATCTAGAATG GGTTTTAAAT TTATCCAGTT GCTTAGTGGA GATCATTGAT 63226 .......... .......... .......... .......... .......... .......... 297 CATTGTGATG ATGCAGTTCA AATATTTTTA CTGTGCTCCT CCTATAACTG CGGGTGGGGG 63286 .......... .......... .......... .......... .......... .......... 297 TGGGGGTGGG GTCAGGAAAT AAAAAGGGGA AAGAATATCT TAAAAGTACA CAATGCTGTG 63346 .......... .......... .......... .......... .......... .......... 297 TTCTGAACAC ATTTGGTTGT GGTTATGATA TCATCTCCTG ATATTTAATG AAAACATCCC 63406 .......... .......... .......... .......... .......... .......... 297 CCCTCCCCCT TAAAAAAAAT AGAAAAAATG AAAGAAACAA TAATTTTGTC AAAACAAAAA 63466 .......... .......... .......... .......... .......... .......... 297 TAAAAATTAT AATTGTCCTC TGTATTCCAC TGATCTTATC TTTCAGGAGG ATCTAACTTC 63526 .......... .......... .......... .......... .......... .......... 297 AGTTTCACTT TTTTTTGTCT CTTCATCAGT GCCGCTAGCT GTGATATTGA CGAAAATGGC 63586 | |||||||||| |||||||||| |||||||||| .......... .......... .........T GCCGCTAGCT GTGATATTGA CGAAAATGGC 328 ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 63646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGTTACA TGGTTCTTTG TCGTGTCATT TTGGGCAATG AAGAACTTTT GCATTTTGGC 388 TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 63706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATCAAT CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT 448 CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 63766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTCACT ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC 508 GTGAGCT 63773 ||||||| GTGAGCT 515 hqPGS_C08HBa0320P23.1+_SGN-E259010+ (62807 63103,63556 63773) ******************************************************************************** EST sequence 4 +strand 532 n (File: SGN-E248674+) 1 TGGGTTGAAG TGTTAGATAA TGACCGTAGG ACAGCTGACG TCGACTCAAA AAGTAAAGTA 61 GCGTCTCAGT ACGTGGCACG TATAGTTGGA GCTGGCACTG AGAAGCTGGA GGAGCTATCA 121 TTTCAACCAA ATTGTAGCTC ATTTTATAGC ACGCTTGGTA AGAGGAAGAG GACTGTGGAA 181 GGTGAAACTA ATTGCAGATC ACATCTCAGG AAATCGACAG TTAAGAACTA CTCAAATTTC 241 ATTAAAAGTG GACTGCCACA ACGTGTTTTA TATCATCAGA ATGGTGAATG GAATGATTTC 301 CCTCAAGATA TTGTTCGTAT TGTCAAAGAA GATTTCCGTG CAAAGAAGGC TGTGATTGAG 361 GTGAACTTTG GTGGCTTTCA TGTAATACTT GATATTCTAT ATATGGTTCA GGTAAATTTG 421 GTTACCGGAT TGGAGAAACC TATTGCCTGG ATAGACGAAG CAGGTGGCTG TTTCTTCCCT 481 GATTTATGTC TCGTTAGTTG TAAAGCGCAC GACAACATTG AGATACAATC GC Predicted gene structure (within gDNA segment 61395 to 63136): Exon 1 61995 62526 ( 532 n); cDNA 1 532 ( 532 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E248674+ 1.000 532 1.000 C PGS_C08HBa0320P23.1+_SGN-E248674+ (61995 62526) Alignment (genomic DNA sequence = upper lines): TGGGTTGAAG TGTTAGATAA TGACCGTAGG ACAGCTGACG TCGACTCAAA AAGTAAAGTA 62054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTGAAG TGTTAGATAA TGACCGTAGG ACAGCTGACG TCGACTCAAA AAGTAAAGTA 60 GCGTCTCAGT ACGTGGCACG TATAGTTGGA GCTGGCACTG AGAAGCTGGA GGAGCTATCA 62114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTCTCAGT ACGTGGCACG TATAGTTGGA GCTGGCACTG AGAAGCTGGA GGAGCTATCA 120 TTTCAACCAA ATTGTAGCTC ATTTTATAGC ACGCTTGGTA AGAGGAAGAG GACTGTGGAA 62174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAACCAA ATTGTAGCTC ATTTTATAGC ACGCTTGGTA AGAGGAAGAG GACTGTGGAA 180 GGTGAAACTA ATTGCAGATC ACATCTCAGG AAATCGACAG TTAAGAACTA CTCAAATTTC 62234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAAACTA ATTGCAGATC ACATCTCAGG AAATCGACAG TTAAGAACTA CTCAAATTTC 240 ATTAAAAGTG GACTGCCACA ACGTGTTTTA TATCATCAGA ATGGTGAATG GAATGATTTC 62294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAAGTG GACTGCCACA ACGTGTTTTA TATCATCAGA ATGGTGAATG GAATGATTTC 300 CCTCAAGATA TTGTTCGTAT TGTCAAAGAA GATTTCCGTG CAAAGAAGGC TGTGATTGAG 62354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCAAGATA TTGTTCGTAT TGTCAAAGAA GATTTCCGTG CAAAGAAGGC TGTGATTGAG 360 GTGAACTTTG GTGGCTTTCA TGTAATACTT GATATTCTAT ATATGGTTCA GGTAAATTTG 62414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACTTTG GTGGCTTTCA TGTAATACTT GATATTCTAT ATATGGTTCA GGTAAATTTG 420 GTTACCGGAT TGGAGAAACC TATTGCCTGG ATAGACGAAG CAGGTGGCTG TTTCTTCCCT 62474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACCGGAT TGGAGAAACC TATTGCCTGG ATAGACGAAG CAGGTGGCTG TTTCTTCCCT 480 GATTTATGTC TCGTTAGTTG TAAAGCGCAC GACAACATTG AGATACAATC GC 62526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATTTATGTC TCGTTAGTTG TAAAGCGCAC GACAACATTG AGATACAATC GC 532 hqPGS_C08HBa0320P23.1+_SGN-E248674+ (61995 62526) ******************************************************************************** EST sequence 16 +strand 578 n (File: SGN-E253400+) 1 GGAACTGTTT GAGAAGCAGG CTGAGATAAC TCAAAAGTAT CGTGGGAAAT CCAATGTTCG 61 GCATGCTTGG CTTGCCGCTT CCAAAGAGGT AGTATCTACA ATTATGAACT ATGGGCTTAT 121 GCATGGGGCC TGTGGACAGA AGACTAAGCT TGGTGTTGGA GTGCACCTCA TTGCCCAGGA 181 CTGTGCCTCT AAAAGTGCCG CTAGCTGTGA TATTGACGAA AATGGCATCC GTTACATGGT 241 TCTTTGTCGT GTCATTTTGG GCAATGAAGA ACTTTTGCAT TTTGGCTCTC ATCAATCTTA 301 TCCAAGCAAT GAGAGATATG ATAGTGGTGT TGATGATCTC GAGAGTCCTA CTCACTATAC 361 TGTTTGGAAC ATGAATATGA ATACACACAT ATATCCTGAA TATGTCGTGA GCTTCAAGAT 421 GTCTTCAAGA GCAGAAGGGG CTCCAATAAA GGAAGAAAGT CGGCTTGATG TCTCCAGAGT 481 TACTTCTCAA GGATCTGAGG AGCGATTGGA CTTGAATAAA TTGCCTACAG AATTGGGGAA 541 CTGTCAGCAA TATCAATTTG TAAGAAACAT ACAGCAAT Predicted gene structure (within gDNA segment 62309 to 66780): Exon 1 62909 63103 ( 195 n); cDNA 1 195 ( 195 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 2 63556 63797 ( 242 n); cDNA 196 437 ( 242 n); score: 0.992 Intron 2 63798 64974 (1177 n); Pd: 0.970 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 3 64975 65072 ( 98 n); cDNA 438 535 ( 98 n); score: 0.990 Intron 3 65073 66127 (1055 n); Pd: 0.000 (s: 0.98), Pa: 0.990 (s: 1.00) Exon 4 66128 66170 ( 43 n); cDNA 536 578 ( 43 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E253400+ 0.994 578 1.000 C PGS_C08HBa0320P23.1+_SGN-E253400+ (62909 63103,63556 63797,64975 65072,66128 66170) Alignment (genomic DNA sequence = upper lines): GGAACTGTTT GAGAAGCAGG CTGAGATAAC TCAAAAGTAT CGTGGGAAAT CCAATGTTCG 62968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTGTTT GAGAAGCAGG CTGAGATAAC TCAAAAGTAT CGTGGGAAAT CCAATGTTCG 60 GCATGCTTGG CTTGCCGCTT CCAAAGAGGT AGTATCTACA ATTATGAACT ATGGGCTTAT 63028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGCTTGG CTTGCCGCTT CCAAAGAGGT AGTATCTACA ATTATGAACT ATGGGCTTAT 120 GCATGGGGCC TGTGGACAGA AGACTAAGCT TGGTGTTGGA GTGCACCTCA TTGCCCAGGA 63088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGGGGCC TGTGGACAGA AGACTAAGCT TGGTGTTGGA GTGCACCTCA TTGCCCAGGA 180 CTGTGCCTCT AAAAGGTTGG GTAATACTTT GTAATGAGAA ATCATTTTTA TTGATGATCT 63148 |||||||||| ||||| CTGTGCCTCT AAAAG..... .......... .......... .......... .......... 195 CATTATTGTT TGGAGTTCCA ATATCATGAT CTAGAATGGG TTTTAAATTT ATCCAGTTGC 63208 .......... .......... .......... .......... .......... .......... 195 TTAGTGGAGA TCATTGATCA TTGTGATGAT GCAGTTCAAA TATTTTTACT GTGCTCCTCC 63268 .......... .......... .......... .......... .......... .......... 195 TATAACTGCG GGTGGGGGTG GGGGTGGGGT CAGGAAATAA AAAGGGGAAA GAATATCTTA 63328 .......... .......... .......... .......... .......... .......... 195 AAAGTACACA ATGCTGTGTT CTGAACACAT TTGGTTGTGG TTATGATATC ATCTCCTGAT 63388 .......... .......... .......... .......... .......... .......... 195 ATTTAATGAA AACATCCCCC CTCCCCCTTA AAAAAAATAG AAAAAATGAA AGAAACAATA 63448 .......... .......... .......... .......... .......... .......... 195 ATTTTGTCAA AACAAAAATA AAAATTATAA TTGTCCTCTG TATTCCACTG ATCTTATCTT 63508 .......... .......... .......... .......... .......... .......... 195 TCAGGAGGAT CTAACTTCAG TTTCACTTTT TTTTGTCTCT TCATCAGTGC CGCTAGCTGT 63568 ||| |||||||||| .......... .......... .......... .......... .......TGC CGCTAGCTGT 208 GATATTGACG AAAATGGCAT CCGTTACATG GTTCTTTGTC GTGTCATTTT GGGCAATGAA 63628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTGACG AAAATGGCAT CCGTTACATG GTTCTTTGTC GTGTCATTTT GGGCAATGAA 268 GAACTTTTGC ATTTTGGCTC TCATCAATCT TATCCAAGCA ATGAGAGATA TGATAGTGGT 63688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTTTGC ATTTTGGCTC TCATCAATCT TATCCAAGCA ATGAGAGATA TGATAGTGGT 328 GTTGATGATC TCGAGAGTCC TACTCACTAT ACTGTTTGGA ACATGAATAT GAATACACAC 63748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATGATC TCGAGAGTCC TACTCACTAT ACTGTTTGGA ACATGAATAT GAATACACAC 388 ATATATCCTG AATATGTCGT GAGCTTCAGG ATGTCTTCAG GAGCAGAAGG TGTCTTATTT 63808 |||||||||| |||||||||| |||||||| | ||||||||| ||||||||| ATATATCCTG AATATGTCGT GAGCTTCAAG ATGTCTTCAA GAGCAGAAG. .......... 437 ATCTCGTTTT CCTTACATTT AAATGTCAGA ATATCATGAT TAGTATGAAA TTAAATAGTG 63868 .......... .......... .......... .......... .......... .......... 437 TGTTGATTAC CCTGAGTATG TCTCATCTTC CCTTAAAGAG AAACTGCAGC ATTTCCTCTT 63928 .......... .......... .......... .......... .......... .......... 437 TGCTATTTTT AATATTGCAG TACTTTAGAC TTCCAAAGTA AAAGAGTATT TAGTTCACGT 63988 .......... .......... .......... .......... .......... .......... 437 TTTATCTCTG AAATCAGTCA AATATTATCT GTTAATTCTA CATCCTTAAA AATACAATTA 64048 .......... .......... .......... .......... .......... .......... 437 CTATTTTTGA TCAACTAACA CAAGAATTTG GATGTGCACC GCTTTGGAGA TCATGTCATG 64108 .......... .......... .......... .......... .......... .......... 437 TGTTACTACT TCTCCTACTA TTTAAAGATG GGATTTTGGG ATATTTGCTG CTAGAGAAAA 64168 .......... .......... .......... .......... .......... .......... 437 GTTTTGAACA CAGAAGTTGG CTCTGGTTTT GAATACTTGT AATGATTATT ATGACGTGCA 64228 .......... .......... .......... .......... .......... .......... 437 AGACTATTGT TTTGTATTTG TGAAGTAAAT AGCTTTGTAA CTTTCTTAAA AATTTCAGGT 64288 .......... .......... .......... .......... .......... .......... 437 TGTGTTGTCA CTTTCCGCAC AATTAATGTT GAGGATTCGG GTCACTGTGA CAATGACACG 64348 .......... .......... .......... .......... .......... .......... 437 TTTCTTAGCC TCGTTATGTG ATTGTTCTAT TTCTAGTGCC TCACATTGAA GGATCTTGAT 64408 .......... .......... .......... .......... .......... .......... 437 CTAAACTATT TATGAACCGA GGGTCATCAT TATTATATTT TGTTTGACTT CCTTTTTTAG 64468 .......... .......... .......... .......... .......... .......... 437 ATTTTCAAAA TGTAATCGCA ACTGCTGAAG GCAGCATTTA ATGGAACATT GCTTGGAATC 64528 .......... .......... .......... .......... .......... .......... 437 CGTAGATTAA TTTGTTTGGC GTCTTCTTTA GATAATTGGG CTTGATAGTC CACTGTTAAG 64588 .......... .......... .......... .......... .......... .......... 437 AAGTTTGTGG GACTTTGGCG TACATTGTTG ATATTTTTTG GGCTTTTGGA GGACATTAAG 64648 .......... .......... .......... .......... .......... .......... 437 CACGATGGCA CTAGCTATTT AGTTGCAGGA TGACTTTTTT TTTTTTTATA CATAGGGACT 64708 .......... .......... .......... .......... .......... .......... 437 TTCATATCAT TATGGAGAAT GTTCTAGAGT AAGACTAACT TACCAATGAT TAAAAGAGGG 64768 .......... .......... .......... .......... .......... .......... 437 AAACTTGCAA TCATAATACA CTGCTCAAAG GTATTTTTGA TGTAGAGAGA TAAAGGTGTT 64828 .......... .......... .......... .......... .......... .......... 437 CCACCTATTT AGAGCATGAC GTATTGATTT ATTTATCCAA GGCGTAAAAA GAACATTTAT 64888 .......... .......... .......... .......... .......... .......... 437 GCCGATTTAA TGTGCCATTC AGTAATTGTA CTTCTCAAAT TACTTAATTA CCACTCACTG 64948 .......... .......... .......... .......... .......... .......... 437 ATGGTTAGTT TGTATTTTAT TTCCAGGGGC TCCAATAAAG GAAGAAAGTC GGCTTGATGT 65008 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGGC TCCAATAAAG GAAGAAAGTC GGCTTGATGT 471 CTCCAGAGTT ACTTCTCAGG GATCTGAGGA GCGATTGGAC TTGAATAAAT TGCCTACAGA 65068 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| CTCCAGAGTT ACTTCTCAAG GATCTGAGGA GCGATTGGAC TTGAATAAAT TGCCTACAGA 531 ATTGGTAATC CCTCACTCCA CCCGATTCCC CGCCCCGAAA AAAAGAACAG CAAGCATTAA 65128 |||| ATTG...... .......... .......... .......... .......... .......... 535 AAATTAAGTA AATATGATTG GTCTTTGTTG TTGTTTTGCT AATATGATTA AGGTTAGTAA 65188 .......... .......... .......... .......... .......... .......... 535 AAAAAGTTTT GAGGGGAAGG TAACTAACGT GAGTTCTATT TTCCTTACTA CATCTATATG 65248 .......... .......... .......... .......... .......... .......... 535 GGGCAACATG AAGTGCATCT CTTGGCACAA GTTGATTGCT CCAGTGGGTA CCTTCTGTGC 65308 .......... .......... .......... .......... .......... .......... 535 GCTCGTCTTC AGAAAACTGA ACTTTGACTT GAAATAGTAT TCTTTGCTGC GGGTGCACAA 65368 .......... .......... .......... .......... .......... .......... 535 GAATTTGCAA TATGAGGTTT GAAGGCTTTG TATCAGCACA TATTTTTGTC TATATATGAA 65428 .......... .......... .......... .......... .......... .......... 535 TTTTCATTCA TTGACAGTCC TTGGCGAACT TGTAAGAGGT GGATAAAGTT AGCTTCTCAG 65488 .......... .......... .......... .......... .......... .......... 535 AGGATGTGTG AATTCTATAA TTTTGATCAT TTTGAAAGCA GAACTGTTCT GATGTTGAGC 65548 .......... .......... .......... .......... .......... .......... 535 ATTGTTGCAC TTGATCTCCT CGCTTACGGT AATCTTACTG TTGGAAGAAA GAGAATGATC 65608 .......... .......... .......... .......... .......... .......... 535 TCTTCTTTTA GTTGATTCTT CCGAGTCTGA GCAAAGGGTG TGTTTAGTTT CTGTTGAGGA 65668 .......... .......... .......... .......... .......... .......... 535 ACTGTTCTCA AGTTTTAGCT AAAGGAGCAT TCAGTATGAT GATATCTTGA CACCATAGGA 65728 .......... .......... .......... .......... .......... .......... 535 AGCAAACTAG GTGATAATTT TTTTTGTTTT GGCTTGTGAC TTCTGTTGAT GTTGGCACGA 65788 .......... .......... .......... .......... .......... .......... 535 TAATGAGATT GTCAATGCAA TTGCTTTACA GAGCACATCT ACACGTAGAA ACTATTAGGT 65848 .......... .......... .......... .......... .......... .......... 535 GCAAGGCAGT TTTGCTTGTT TTATAATTGG AACTGTTCCG TTTGTTAAGA AATAACCTAG 65908 .......... .......... .......... .......... .......... .......... 535 TCAAAACTCA AAAGATATAT TTCTATTTTT AGTCTCTGCC TTCTTCCAGT GTTTGCAATT 65968 .......... .......... .......... .......... .......... .......... 535 TTGGGGAAAA TTTATTCCAT TTTGCTCGAT TTTTTTCTTC CATTTAATAA TTTATTGTTT 66028 .......... .......... .......... .......... .......... .......... 535 ACTTGCAAAG AAGTAAAAAA ATTTCTTTGG ATTTTTAGCC TAAGTCTTTC TCATTAAGTT 66088 .......... .......... .......... .......... .......... .......... 535 GATATGCTTG TTTTAACATC TCCTGTTTTA TGCTATTAGG GGAACTGTCA GCAATATCAA 66148 | |||||||||| |||||||||| .......... .......... .......... .........G GGAACTGTCA GCAATATCAA 556 TTTGTAAGAA ACATACAGCA AT 66170 |||||||||| |||||||||| || TTTGTAAGAA ACATACAGCA AT 578 hqPGS_C08HBa0320P23.1+_SGN-E253400+ (62909 63103,63556 63797,64975 65072,66128 66170) ******************************************************************************** EST sequence 6 +strand 560 n (File: SGN-E228078+) 1 GAAGCTGGAG GAGCTATCAT TTCAACCAAA TTGTAGCTCA TTTTATAGCA CGCTTGGTAA 61 GAGGAAGAGG ACTGTGGAAG GTGAAACTAA TTGCAGATCA CATCTCAGGA AATCGACAGT 121 TAAGAACTAC TCAAATTTCA TTAAAAGTGG ACTGCCACAA CGTGTTTTAT ATCATCAGAA 181 TGGTGAATGG AATGATTTCC CTCAAGATAT TGTTCGTATT GTCAAAGAAG ATTTCCGTGC 241 AAAGAAGGCT GTGATTGAGG TGAACTTTGG TGGCTTTCAT GTAATACTTG ATATTCTATA 301 TATGGTTCAG GTAAATTTGG TTACCGGATT GGAGAAACCT ATTGCCTGGA TAGACGAAGC 361 AGGTGGCTGT TTCTTCCCTG ATTTATGTCT CGTTAGTTGT AAAGCGCACG ACAACATTGA 421 GATACAATCG CAGAGAACTG AAGGATTCAG TGCTGCTGAG CCAGATAGGG CTACTAATAT 481 CAAGTTGCAT CTTGAAATAG ATATTAATGG ACCGAACAAT TGCAAATTGG ATGAAGGTAT 541 GGAAGAGTCA AATGTCCGTG Predicted gene structure (within gDNA segment 61496 to 63265): Exon 1 62096 62655 ( 560 n); cDNA 1 560 ( 560 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E228078+ 1.000 560 1.000 C PGS_C08HBa0320P23.1+_SGN-E228078+ (62096 62655) Alignment (genomic DNA sequence = upper lines): GAAGCTGGAG GAGCTATCAT TTCAACCAAA TTGTAGCTCA TTTTATAGCA CGCTTGGTAA 62155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTGGAG GAGCTATCAT TTCAACCAAA TTGTAGCTCA TTTTATAGCA CGCTTGGTAA 60 GAGGAAGAGG ACTGTGGAAG GTGAAACTAA TTGCAGATCA CATCTCAGGA AATCGACAGT 62215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGAGG ACTGTGGAAG GTGAAACTAA TTGCAGATCA CATCTCAGGA AATCGACAGT 120 TAAGAACTAC TCAAATTTCA TTAAAAGTGG ACTGCCACAA CGTGTTTTAT ATCATCAGAA 62275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAACTAC TCAAATTTCA TTAAAAGTGG ACTGCCACAA CGTGTTTTAT ATCATCAGAA 180 TGGTGAATGG AATGATTTCC CTCAAGATAT TGTTCGTATT GTCAAAGAAG ATTTCCGTGC 62335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAATGG AATGATTTCC CTCAAGATAT TGTTCGTATT GTCAAAGAAG ATTTCCGTGC 240 AAAGAAGGCT GTGATTGAGG TGAACTTTGG TGGCTTTCAT GTAATACTTG ATATTCTATA 62395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAGGCT GTGATTGAGG TGAACTTTGG TGGCTTTCAT GTAATACTTG ATATTCTATA 300 TATGGTTCAG GTAAATTTGG TTACCGGATT GGAGAAACCT ATTGCCTGGA TAGACGAAGC 62455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTTCAG GTAAATTTGG TTACCGGATT GGAGAAACCT ATTGCCTGGA TAGACGAAGC 360 AGGTGGCTGT TTCTTCCCTG ATTTATGTCT CGTTAGTTGT AAAGCGCACG ACAACATTGA 62515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGCTGT TTCTTCCCTG ATTTATGTCT CGTTAGTTGT AAAGCGCACG ACAACATTGA 420 GATACAATCG CAGAGAACTG AAGGATTCAG TGCTGCTGAG CCAGATAGGG CTACTAATAT 62575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACAATCG CAGAGAACTG AAGGATTCAG TGCTGCTGAG CCAGATAGGG CTACTAATAT 480 CAAGTTGCAT CTTGAAATAG ATATTAATGG ACCGAACAAT TGCAAATTGG ATGAAGGTAT 62635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTTGCAT CTTGAAATAG ATATTAATGG ACCGAACAAT TGCAAATTGG ATGAAGGTAT 540 GGAAGAGTCA AATGTCCGTG 62655 |||||||||| |||||||||| GGAAGAGTCA AATGTCCGTG 560 hqPGS_C08HBa0320P23.1+_SGN-E228078+ (62096 62655) ******************************************************************************** EST sequence 38 +strand 544 n (File: SGN-E235459+) 1 ACAGAAGACT AAGCTTGGTG TTGGAGTGCA CCTCATTGCC CAGGACTGTG CCTCTAAAAG 61 TGCCGATAGC TGTGATATTG ACGAAAATGG CATCCGTTAC ATGGTTCTTT GTCGTGTCAT 121 TTTGGGCAAT GAAGAACTTT TGCATTTTGG CTCTCATCAA TCTTATCCAA GCAATGAGAG 181 ATATGATAGT GGTGCTGATG ATCTCGAGAG TCCTACTCAC TATACTGTTT GGAACATGAA 241 TATGAATACA CACATATATC CTGAATATGT CGTGAGCTTC AGGATGTCTT CAGGAGCAGA 301 AGGGGCTCCA ATAAAGGAAG AAAGTCGGCT AGATGTCTCC AGAGTTACTT CTCAGGGATC 361 TGAGGAGCGA TTGGACTTGA ATAAATTGCC TACAGAATTG GGGAACTGTC AGCAATATCA 421 ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG GGTACCAATA AATCACCTAA 481 ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT TCAGCTAAAG CGTCTCCAAA 541 AGAT Predicted gene structure (within gDNA segment 62444 to 67007): Exon 1 63044 63103 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 0.98) Exon 2 63556 63797 ( 242 n); cDNA 61 302 ( 242 n); score: 0.992 Intron 2 63798 64974 (1177 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 3 64975 65072 ( 98 n); cDNA 303 400 ( 98 n); score: 0.990 Intron 3 65073 66127 (1055 n); Pd: 0.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 66128 66271 ( 144 n); cDNA 401 544 ( 144 n); score: 0.993 MATCH C08HBa0320P23.1+ SGN-E235459+ 0.993 544 1.000 C PGS_C08HBa0320P23.1+_SGN-E235459+ (63044 63103,63556 63797,64975 65072,66128 66271) Alignment (genomic DNA sequence = upper lines): ACAGAAGACT AAGCTTGGTG TTGGAGTGCA CCTCATTGCC CAGGACTGTG CCTCTAAAAG 63103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAAGACT AAGCTTGGTG TTGGAGTGCA CCTCATTGCC CAGGACTGTG CCTCTAAAAG 60 GTTGGGTAAT ACTTTGTAAT GAGAAATCAT TTTTATTGAT GATCTCATTA TTGTTTGGAG 63163 .......... .......... .......... .......... .......... .......... 60 TTCCAATATC ATGATCTAGA ATGGGTTTTA AATTTATCCA GTTGCTTAGT GGAGATCATT 63223 .......... .......... .......... .......... .......... .......... 60 GATCATTGTG ATGATGCAGT TCAAATATTT TTACTGTGCT CCTCCTATAA CTGCGGGTGG 63283 .......... .......... .......... .......... .......... .......... 60 GGGTGGGGGT GGGGTCAGGA AATAAAAAGG GGAAAGAATA TCTTAAAAGT ACACAATGCT 63343 .......... .......... .......... .......... .......... .......... 60 GTGTTCTGAA CACATTTGGT TGTGGTTATG ATATCATCTC CTGATATTTA ATGAAAACAT 63403 .......... .......... .......... .......... .......... .......... 60 CCCCCCTCCC CCTTAAAAAA AATAGAAAAA ATGAAAGAAA CAATAATTTT GTCAAAACAA 63463 .......... .......... .......... .......... .......... .......... 60 AAATAAAAAT TATAATTGTC CTCTGTATTC CACTGATCTT ATCTTTCAGG AGGATCTAAC 63523 .......... .......... .......... .......... .......... .......... 60 TTCAGTTTCA CTTTTTTTTG TCTCTTCATC AGTGCCGCTA GCTGTGATAT TGACGAAAAT 63583 ||||| || |||||||||| |||||||||| .......... .......... .......... ..TGCCGATA GCTGTGATAT TGACGAAAAT 88 GGCATCCGTT ACATGGTTCT TTGTCGTGTC ATTTTGGGCA ATGAAGAACT TTTGCATTTT 63643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATCCGTT ACATGGTTCT TTGTCGTGTC ATTTTGGGCA ATGAAGAACT TTTGCATTTT 148 GGCTCTCATC AATCTTATCC AAGCAATGAG AGATATGATA GTGGTGTTGA TGATCTCGAG 63703 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GGCTCTCATC AATCTTATCC AAGCAATGAG AGATATGATA GTGGTGCTGA TGATCTCGAG 208 AGTCCTACTC ACTATACTGT TTGGAACATG AATATGAATA CACACATATA TCCTGAATAT 63763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCTACTC ACTATACTGT TTGGAACATG AATATGAATA CACACATATA TCCTGAATAT 268 GTCGTGAGCT TCAGGATGTC TTCAGGAGCA GAAGGTGTCT TATTTATCTC GTTTTCCTTA 63823 |||||||||| |||||||||| |||||||||| |||| GTCGTGAGCT TCAGGATGTC TTCAGGAGCA GAAG...... .......... .......... 302 CATTTAAATG TCAGAATATC ATGATTAGTA TGAAATTAAA TAGTGTGTTG ATTACCCTGA 63883 .......... .......... .......... .......... .......... .......... 302 GTATGTCTCA TCTTCCCTTA AAGAGAAACT GCAGCATTTC CTCTTTGCTA TTTTTAATAT 63943 .......... .......... .......... .......... .......... .......... 302 TGCAGTACTT TAGACTTCCA AAGTAAAAGA GTATTTAGTT CACGTTTTAT CTCTGAAATC 64003 .......... .......... .......... .......... .......... .......... 302 AGTCAAATAT TATCTGTTAA TTCTACATCC TTAAAAATAC AATTACTATT TTTGATCAAC 64063 .......... .......... .......... .......... .......... .......... 302 TAACACAAGA ATTTGGATGT GCACCGCTTT GGAGATCATG TCATGTGTTA CTACTTCTCC 64123 .......... .......... .......... .......... .......... .......... 302 TACTATTTAA AGATGGGATT TTGGGATATT TGCTGCTAGA GAAAAGTTTT GAACACAGAA 64183 .......... .......... .......... .......... .......... .......... 302 GTTGGCTCTG GTTTTGAATA CTTGTAATGA TTATTATGAC GTGCAAGACT ATTGTTTTGT 64243 .......... .......... .......... .......... .......... .......... 302 ATTTGTGAAG TAAATAGCTT TGTAACTTTC TTAAAAATTT CAGGTTGTGT TGTCACTTTC 64303 .......... .......... .......... .......... .......... .......... 302 CGCACAATTA ATGTTGAGGA TTCGGGTCAC TGTGACAATG ACACGTTTCT TAGCCTCGTT 64363 .......... .......... .......... .......... .......... .......... 302 ATGTGATTGT TCTATTTCTA GTGCCTCACA TTGAAGGATC TTGATCTAAA CTATTTATGA 64423 .......... .......... .......... .......... .......... .......... 302 ACCGAGGGTC ATCATTATTA TATTTTGTTT GACTTCCTTT TTTAGATTTT CAAAATGTAA 64483 .......... .......... .......... .......... .......... .......... 302 TCGCAACTGC TGAAGGCAGC ATTTAATGGA ACATTGCTTG GAATCCGTAG ATTAATTTGT 64543 .......... .......... .......... .......... .......... .......... 302 TTGGCGTCTT CTTTAGATAA TTGGGCTTGA TAGTCCACTG TTAAGAAGTT TGTGGGACTT 64603 .......... .......... .......... .......... .......... .......... 302 TGGCGTACAT TGTTGATATT TTTTGGGCTT TTGGAGGACA TTAAGCACGA TGGCACTAGC 64663 .......... .......... .......... .......... .......... .......... 302 TATTTAGTTG CAGGATGACT TTTTTTTTTT TTATACATAG GGACTTTCAT ATCATTATGG 64723 .......... .......... .......... .......... .......... .......... 302 AGAATGTTCT AGAGTAAGAC TAACTTACCA ATGATTAAAA GAGGGAAACT TGCAATCATA 64783 .......... .......... .......... .......... .......... .......... 302 ATACACTGCT CAAAGGTATT TTTGATGTAG AGAGATAAAG GTGTTCCACC TATTTAGAGC 64843 .......... .......... .......... .......... .......... .......... 302 ATGACGTATT GATTTATTTA TCCAAGGCGT AAAAAGAACA TTTATGCCGA TTTAATGTGC 64903 .......... .......... .......... .......... .......... .......... 302 CATTCAGTAA TTGTACTTCT CAAATTACTT AATTACCACT CACTGATGGT TAGTTTGTAT 64963 .......... .......... .......... .......... .......... .......... 302 TTTATTTCCA GGGGCTCCAA TAAAGGAAGA AAGTCGGCTT GATGTCTCCA GAGTTACTTC 65023 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| .......... .GGGCTCCAA TAAAGGAAGA AAGTCGGCTA GATGTCTCCA GAGTTACTTC 351 TCAGGGATCT GAGGAGCGAT TGGACTTGAA TAAATTGCCT ACAGAATTGG TAATCCCTCA 65083 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCAGGGATCT GAGGAGCGAT TGGACTTGAA TAAATTGCCT ACAGAATTG. .......... 400 CTCCACCCGA TTCCCCGCCC CGAAAAAAAG AACAGCAAGC ATTAAAAATT AAGTAAATAT 65143 .......... .......... .......... .......... .......... .......... 400 GATTGGTCTT TGTTGTTGTT TTGCTAATAT GATTAAGGTT AGTAAAAAAA GTTTTGAGGG 65203 .......... .......... .......... .......... .......... .......... 400 GAAGGTAACT AACGTGAGTT CTATTTTCCT TACTACATCT ATATGGGGCA ACATGAAGTG 65263 .......... .......... .......... .......... .......... .......... 400 CATCTCTTGG CACAAGTTGA TTGCTCCAGT GGGTACCTTC TGTGCGCTCG TCTTCAGAAA 65323 .......... .......... .......... .......... .......... .......... 400 ACTGAACTTT GACTTGAAAT AGTATTCTTT GCTGCGGGTG CACAAGAATT TGCAATATGA 65383 .......... .......... .......... .......... .......... .......... 400 GGTTTGAAGG CTTTGTATCA GCACATATTT TTGTCTATAT ATGAATTTTC ATTCATTGAC 65443 .......... .......... .......... .......... .......... .......... 400 AGTCCTTGGC GAACTTGTAA GAGGTGGATA AAGTTAGCTT CTCAGAGGAT GTGTGAATTC 65503 .......... .......... .......... .......... .......... .......... 400 TATAATTTTG ATCATTTTGA AAGCAGAACT GTTCTGATGT TGAGCATTGT TGCACTTGAT 65563 .......... .......... .......... .......... .......... .......... 400 CTCCTCGCTT ACGGTAATCT TACTGTTGGA AGAAAGAGAA TGATCTCTTC TTTTAGTTGA 65623 .......... .......... .......... .......... .......... .......... 400 TTCTTCCGAG TCTGAGCAAA GGGTGTGTTT AGTTTCTGTT GAGGAACTGT TCTCAAGTTT 65683 .......... .......... .......... .......... .......... .......... 400 TAGCTAAAGG AGCATTCAGT ATGATGATAT CTTGACACCA TAGGAAGCAA ACTAGGTGAT 65743 .......... .......... .......... .......... .......... .......... 400 AATTTTTTTT GTTTTGGCTT GTGACTTCTG TTGATGTTGG CACGATAATG AGATTGTCAA 65803 .......... .......... .......... .......... .......... .......... 400 TGCAATTGCT TTACAGAGCA CATCTACACG TAGAAACTAT TAGGTGCAAG GCAGTTTTGC 65863 .......... .......... .......... .......... .......... .......... 400 TTGTTTTATA ATTGGAACTG TTCCGTTTGT TAAGAAATAA CCTAGTCAAA ACTCAAAAGA 65923 .......... .......... .......... .......... .......... .......... 400 TATATTTCTA TTTTTAGTCT CTGCCTTCTT CCAGTGTTTG CAATTTTGGG GAAAATTTAT 65983 .......... .......... .......... .......... .......... .......... 400 TCCATTTTGC TCGATTTTTT TCTTCCATTT AATAATTTAT TGTTTACTTG CAAAGAAGTA 66043 .......... .......... .......... .......... .......... .......... 400 AAAAAATTTC TTTGGATTTT TAGCCTAAGT CTTTCTCATT AAGTTGATAT GCTTGTTTTA 66103 .......... .......... .......... .......... .......... .......... 400 ACATCTCCTG TTTTATGCTA TTAGGGGAAC TGTCAGCAAT ATCAATTTGT AAGAAACATA 66163 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGGAAC TGTCAGCAAT ATCAATTTGT AAGAAACATA 436 CAGCAATCCC ATGGTGTTGG TGTGGGTACC AATAAATCAC CTAAATCCCC CTGGATGCCT 66223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATCCC ATGGTGTTGG TGTGGGTACC AATAAATCAC CTAAATCCCC CTGGATGCCT 496 TTCTCTATGT TATTCGGAGC TATTTCAGCT AAAGTGTCTC CAAAAGAT 66271 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||| TTCTCTATGT TATTCGGAGC TATTTCAGCT AAAGCGTCTC CAAAAGAT 544 hqPGS_C08HBa0320P23.1+_SGN-E235459+ (63044 63103,63556 63797,64975 65072,66128 66271) ******************************************************************************** EST sequence 5 +strand 513 n (File: SGN-E300731+) 1 TTTCATGTAA TACTTGATAT TCTATATATG GCTCAGGTAA ATTTGGTTAC CGGATTGGAG 61 AAACCTATTG CCTGGATAGA CGAAGCAGGT GGCTGTTTCT TCCCTGATTT ATGTCTCGTT 121 AGTTGTAAAG CGCACGACAA CATTGAGATA CAATCGCAGA GAACTGAAGG ATTCAGTGCT 181 GCTGAGCCAG ATAGGGCTAC TAATATCAAG TTGCATCTTG AAATAGATAT TAATGGACCG 241 AACAATTGCA AATTGGATGA AGGTATGGAA GAGTCAAATG TCCGTGTTAA AAGGATTAAA 301 GTCGATCCTT TAAAAGATAA TCAACAATTT GCTGTTGATC AAAAATCATA TCCTAAAATG 361 GAAGTAGTGG CAGAAAATCA ACAGGATCAG GAAAGTCTGT CTCCTATATT AGAAGATACA 421 CTTAAGTTGG TGGATGCAGA ATCGGTTAAA ACTATGTTTG CTAAGGGAAT GAATACCATC 481 TATATGGTGG ATATAGTCAA AATTAGTCAA TGC Predicted gene structure (within gDNA segment 61770 to 63492): Exon 1 62370 62882 ( 513 n); cDNA 1 513 ( 513 n); score: 0.996 MATCH C08HBa0320P23.1+ SGN-E300731+ 0.996 513 1.000 C PGS_C08HBa0320P23.1+_SGN-E300731+ (62370 62882) Alignment (genomic DNA sequence = upper lines): TTTCATGTAA TACTTGATAT TCTATATATG GTTCAGGTAA ATTTGGTTAC CGGATTGGAG 62429 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TTTCATGTAA TACTTGATAT TCTATATATG GCTCAGGTAA ATTTGGTTAC CGGATTGGAG 60 AAACCTATTG CCTGGATAGA CGAAGCAGGT GGCTGTTTCT TCCCTGATTT ATGTCTCGTT 62489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTATTG CCTGGATAGA CGAAGCAGGT GGCTGTTTCT TCCCTGATTT ATGTCTCGTT 120 AGTTGTAAAG CGCACGACAA CATTGAGATA CAATCGCAGA GAACTGAAGG ATTCAGTGCT 62549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTAAAG CGCACGACAA CATTGAGATA CAATCGCAGA GAACTGAAGG ATTCAGTGCT 180 GCTGAGCCAG ATAGGGCTAC TAATATCAAG TTGCATCTTG AAATAGATAT TAATGGACCG 62609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGCCAG ATAGGGCTAC TAATATCAAG TTGCATCTTG AAATAGATAT TAATGGACCG 240 AACAATTGCA AATTGGATGA AGGTATGGAA GAGTCAAATG TCCGTGTTAA AAGGATTAAA 62669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATTGCA AATTGGATGA AGGTATGGAA GAGTCAAATG TCCGTGTTAA AAGGATTAAA 300 GTCGATCCTT TAAAAGATAA TCAACAATTT GCTGTTGATC AAAAATCATA TCCTAAAATG 62729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATCCTT TAAAAGATAA TCAACAATTT GCTGTTGATC AAAAATCATA TCCTAAAATG 360 GAAGTAGTGG CAGAAAATCA ACAGGATCAG GAAAGTCTGT CTCCTATATT AGAAGATACA 62789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTAGTGG CAGAAAATCA ACAGGATCAG GAAAGTCTGT CTCCTATATT AGAAGATACA 420 CTTAAGTTGG TGGATGCAGA ATCGGTTAAA ACTATGTTTG TTAAGGGAAT GAATACCATC 62849 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTTAAGTTGG TGGATGCAGA ATCGGTTAAA ACTATGTTTG CTAAGGGAAT GAATACCATC 480 TATATGGTGG ATATAGTCAA AATTAGTCAA TGC 62882 |||||||||| |||||||||| |||||||||| ||| TATATGGTGG ATATAGTCAA AATTAGTCAA TGC 513 hqPGS_C08HBa0320P23.1+_SGN-E300731+ (62370 62882) ******************************************************************************** EST sequence 42 +strand 517 n (File: SGN-E274724+) 1 TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 61 AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 121 AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 181 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 241 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 301 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 361 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 421 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 481 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGG Predicted gene structure (within gDNA segment 61918 to 63644): Exon 1 62518 63034 ( 517 n); cDNA 1 517 ( 517 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E274724+ 1.000 517 1.000 C PGS_C08HBa0320P23.1+_SGN-E274724+ (62518 63034) Alignment (genomic DNA sequence = upper lines): TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 62577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAATCGCA GAGAACTGAA GGATTCAGTG CTGCTGAGCC AGATAGGGCT ACTAATATCA 60 AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 62637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCATCT TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG 120 AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 62697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGTCAAA TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT 180 TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 62757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTGA TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC 240 AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 62817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAGTCT GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA 300 AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 62877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATGTT TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC 360 AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 62937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTCAAG TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA 420 CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 62997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAAGTA TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG 480 TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGG 63034 |||||||||| |||||||||| |||||||||| ||||||| TAGTATCTAC AATTATGAAC TATGGGCTTA TGCATGG 517 hqPGS_C08HBa0320P23.1+_SGN-E274724+ (62518 63034) ******************************************************************************** EST sequence 46 +strand 427 n (File: SGN-E267104+) 1 TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG AAGAGTCAAA 61 TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT TTGCTGTTGA 121 TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC AGGAAAGTCT 181 GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA AAACTATGTT 241 TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC AATGCTCAAG 301 TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA CTCAAAAGTA 361 TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG TAGTATCTAC 421 AATTATG Predicted gene structure (within gDNA segment 61988 to 63624): Exon 1 62588 63014 ( 427 n); cDNA 1 427 ( 427 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E267104+ 1.000 427 1.000 C PGS_C08HBa0320P23.1+_SGN-E267104+ (62588 63014) Alignment (genomic DNA sequence = upper lines): TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG AAGAGTCAAA 62647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATAGAT ATTAATGGAC CGAACAATTG CAAATTGGAT GAAGGTATGG AAGAGTCAAA 60 TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT TTGCTGTTGA 62707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCGTGTT AAAAGGATTA AAGTCGATCC TTTAAAAGAT AATCAACAAT TTGCTGTTGA 120 TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC AGGAAAGTCT 62767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAATCA TATCCTAAAA TGGAAGTAGT GGCAGAAAAT CAACAGGATC AGGAAAGTCT 180 GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA AAACTATGTT 62827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCCTATA TTAGAAGATA CACTTAAGTT GGTGGATGCA GAATCGGTTA AAACTATGTT 240 TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC AATGCTCAAG 62887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAAGGGA ATGAATACCA TCTATATGGT GGATATAGTC AAAATTAGTC AATGCTCAAG 300 TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA CTCAAAAGTA 62947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATATATG AGAAATCGCT TGGAACTGTT TGAGAAGCAG GCTGAGATAA CTCAAAAGTA 360 TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG TAGTATCTAC 63007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGGGAAA TCCAATGTTC GGCATGCTTG GCTTGCCGCT TCCAAAGAGG TAGTATCTAC 420 AATTATG 63014 ||||||| AATTATG 427 hqPGS_C08HBa0320P23.1+_SGN-E267104+ (62588 63014) ******************************************************************************** EST sequence 55 +strand 507 n (File: SGN-E249967+) 1 GGTTCTTTGT CGTGTCATTT TGGGCCAATG AAGAACTTTT GCATTTTGGC TCTCATCAAT 61 CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT CCTACTCACT 121 ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC GTGAGCTTCA 181 GGATGTCTTC AGGAGCAGAA GGGGCTCCAA TAAAGGAAGA AAGTCGGCTT GATGTCTCCA 241 GAGTTACTTC TCAGGGATCT GAGGAGCGAT TGGACTTGAA TAAATTGCCT ACAGAATTGG 301 GGAACTGTCA GCAATATCAA TTTGTAAGAA ACATACAGCA ATCCCATGGT GTTGGTGTGG 361 GTACCAATAA ATCACCTAAA TCCCCCTGGA TGCCTTTCTC TATGTTATTC GGAGCTATTT 421 CAGCTAAAGT GTCTCCAAAA GATTTGAAAT TGGTTCATGC ACATTATGAC TTGTTCAGGA 481 GCAAAAAAAT TTCCCGGAAT GATTTCA Predicted gene structure (within gDNA segment 62998 to 67197): Exon 1 63598 63797 ( 200 n); cDNA 1 201 ( 201 n); score: 0.988 Intron 1 63798 64974 (1177 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64975 65072 ( 98 n); cDNA 202 299 ( 98 n); score: 1.000 Intron 2 65073 66127 (1055 n); Pd: 0.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 66128 66307 ( 180 n); cDNA 300 479 ( 180 n); score: 1.000 Intron 3 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 0) Exon 4 66393 66420 ( 28 n); cDNA 480 507 ( 28 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E249967+ 0.995 506 0.998 C PGS_C08HBa0320P23.1+_SGN-E249967+ (63598 63797,64975 65072,66128 66307,66393 66420) Alignment (genomic DNA sequence = upper lines): GGTTCTTTGT CGTGTCATTT TGGG-CAATG AAGAACTTTT GCATTTTGGC TCTCATCAAT 63656 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GGTTCTTTGT CGTGTCATTT TGGGCCAATG AAGAACTTTT GCATTTTGGC TCTCATCAAT 60 CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT CCTACTCACT 63716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCCAAG CAATGAGAGA TATGATAGTG GTGTTGATGA TCTCGAGAGT CCTACTCACT 120 ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC GTGAGCTTCA 63776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGTTTG GAACATGAAT ATGAATACAC ACATATATCC TGAATATGTC GTGAGCTTCA 180 GGATGTCTTC AGGAGCAGAA GGTGTCTTAT TTATCTCGTT TTCCTTACAT TTAAATGTCA 63836 |||||||||| |||||||||| | GGATGTCTTC AGGAGCAGAA G......... .......... .......... .......... 201 GAATATCATG ATTAGTATGA AATTAAATAG TGTGTTGATT ACCCTGAGTA TGTCTCATCT 63896 .......... .......... .......... .......... .......... .......... 201 TCCCTTAAAG AGAAACTGCA GCATTTCCTC TTTGCTATTT TTAATATTGC AGTACTTTAG 63956 .......... .......... .......... .......... .......... .......... 201 ACTTCCAAAG TAAAAGAGTA TTTAGTTCAC GTTTTATCTC TGAAATCAGT CAAATATTAT 64016 .......... .......... .......... .......... .......... .......... 201 CTGTTAATTC TACATCCTTA AAAATACAAT TACTATTTTT GATCAACTAA CACAAGAATT 64076 .......... .......... .......... .......... .......... .......... 201 TGGATGTGCA CCGCTTTGGA GATCATGTCA TGTGTTACTA CTTCTCCTAC TATTTAAAGA 64136 .......... .......... .......... .......... .......... .......... 201 TGGGATTTTG GGATATTTGC TGCTAGAGAA AAGTTTTGAA CACAGAAGTT GGCTCTGGTT 64196 .......... .......... .......... .......... .......... .......... 201 TTGAATACTT GTAATGATTA TTATGACGTG CAAGACTATT GTTTTGTATT TGTGAAGTAA 64256 .......... .......... .......... .......... .......... .......... 201 ATAGCTTTGT AACTTTCTTA AAAATTTCAG GTTGTGTTGT CACTTTCCGC ACAATTAATG 64316 .......... .......... .......... .......... .......... .......... 201 TTGAGGATTC GGGTCACTGT GACAATGACA CGTTTCTTAG CCTCGTTATG TGATTGTTCT 64376 .......... .......... .......... .......... .......... .......... 201 ATTTCTAGTG CCTCACATTG AAGGATCTTG ATCTAAACTA TTTATGAACC GAGGGTCATC 64436 .......... .......... .......... .......... .......... .......... 201 ATTATTATAT TTTGTTTGAC TTCCTTTTTT AGATTTTCAA AATGTAATCG CAACTGCTGA 64496 .......... .......... .......... .......... .......... .......... 201 AGGCAGCATT TAATGGAACA TTGCTTGGAA TCCGTAGATT AATTTGTTTG GCGTCTTCTT 64556 .......... .......... .......... .......... .......... .......... 201 TAGATAATTG GGCTTGATAG TCCACTGTTA AGAAGTTTGT GGGACTTTGG CGTACATTGT 64616 .......... .......... .......... .......... .......... .......... 201 TGATATTTTT TGGGCTTTTG GAGGACATTA AGCACGATGG CACTAGCTAT TTAGTTGCAG 64676 .......... .......... .......... .......... .......... .......... 201 GATGACTTTT TTTTTTTTTA TACATAGGGA CTTTCATATC ATTATGGAGA ATGTTCTAGA 64736 .......... .......... .......... .......... .......... .......... 201 GTAAGACTAA CTTACCAATG ATTAAAAGAG GGAAACTTGC AATCATAATA CACTGCTCAA 64796 .......... .......... .......... .......... .......... .......... 201 AGGTATTTTT GATGTAGAGA GATAAAGGTG TTCCACCTAT TTAGAGCATG ACGTATTGAT 64856 .......... .......... .......... .......... .......... .......... 201 TTATTTATCC AAGGCGTAAA AAGAACATTT ATGCCGATTT AATGTGCCAT TCAGTAATTG 64916 .......... .......... .......... .......... .......... .......... 201 TACTTCTCAA ATTACTTAAT TACCACTCAC TGATGGTTAG TTTGTATTTT ATTTCCAGGG 64976 || .......... .......... .......... .......... .......... ........GG 203 GCTCCAATAA AGGAAGAAAG TCGGCTTGAT GTCTCCAGAG TTACTTCTCA GGGATCTGAG 65036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCAATAA AGGAAGAAAG TCGGCTTGAT GTCTCCAGAG TTACTTCTCA GGGATCTGAG 263 GAGCGATTGG ACTTGAATAA ATTGCCTACA GAATTGGTAA TCCCTCACTC CACCCGATTC 65096 |||||||||| |||||||||| |||||||||| |||||| GAGCGATTGG ACTTGAATAA ATTGCCTACA GAATTG.... .......... .......... 299 CCCGCCCCGA AAAAAAGAAC AGCAAGCATT AAAAATTAAG TAAATATGAT TGGTCTTTGT 65156 .......... .......... .......... .......... .......... .......... 299 TGTTGTTTTG CTAATATGAT TAAGGTTAGT AAAAAAAGTT TTGAGGGGAA GGTAACTAAC 65216 .......... .......... .......... .......... .......... .......... 299 GTGAGTTCTA TTTTCCTTAC TACATCTATA TGGGGCAACA TGAAGTGCAT CTCTTGGCAC 65276 .......... .......... .......... .......... .......... .......... 299 AAGTTGATTG CTCCAGTGGG TACCTTCTGT GCGCTCGTCT TCAGAAAACT GAACTTTGAC 65336 .......... .......... .......... .......... .......... .......... 299 TTGAAATAGT ATTCTTTGCT GCGGGTGCAC AAGAATTTGC AATATGAGGT TTGAAGGCTT 65396 .......... .......... .......... .......... .......... .......... 299 TGTATCAGCA CATATTTTTG TCTATATATG AATTTTCATT CATTGACAGT CCTTGGCGAA 65456 .......... .......... .......... .......... .......... .......... 299 CTTGTAAGAG GTGGATAAAG TTAGCTTCTC AGAGGATGTG TGAATTCTAT AATTTTGATC 65516 .......... .......... .......... .......... .......... .......... 299 ATTTTGAAAG CAGAACTGTT CTGATGTTGA GCATTGTTGC ACTTGATCTC CTCGCTTACG 65576 .......... .......... .......... .......... .......... .......... 299 GTAATCTTAC TGTTGGAAGA AAGAGAATGA TCTCTTCTTT TAGTTGATTC TTCCGAGTCT 65636 .......... .......... .......... .......... .......... .......... 299 GAGCAAAGGG TGTGTTTAGT TTCTGTTGAG GAACTGTTCT CAAGTTTTAG CTAAAGGAGC 65696 .......... .......... .......... .......... .......... .......... 299 ATTCAGTATG ATGATATCTT GACACCATAG GAAGCAAACT AGGTGATAAT TTTTTTTGTT 65756 .......... .......... .......... .......... .......... .......... 299 TTGGCTTGTG ACTTCTGTTG ATGTTGGCAC GATAATGAGA TTGTCAATGC AATTGCTTTA 65816 .......... .......... .......... .......... .......... .......... 299 CAGAGCACAT CTACACGTAG AAACTATTAG GTGCAAGGCA GTTTTGCTTG TTTTATAATT 65876 .......... .......... .......... .......... .......... .......... 299 GGAACTGTTC CGTTTGTTAA GAAATAACCT AGTCAAAACT CAAAAGATAT ATTTCTATTT 65936 .......... .......... .......... .......... .......... .......... 299 TTAGTCTCTG CCTTCTTCCA GTGTTTGCAA TTTTGGGGAA AATTTATTCC ATTTTGCTCG 65996 .......... .......... .......... .......... .......... .......... 299 ATTTTTTTCT TCCATTTAAT AATTTATTGT TTACTTGCAA AGAAGTAAAA AAATTTCTTT 66056 .......... .......... .......... .......... .......... .......... 299 GGATTTTTAG CCTAAGTCTT TCTCATTAAG TTGATATGCT TGTTTTAACA TCTCCTGTTT 66116 .......... .......... .......... .......... .......... .......... 299 TATGCTATTA GGGGAACTGT CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG 66176 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGGAACTGT CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG 348 GTGTTGGTGT GGGTACCAAT AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT 66236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTGGTGT GGGTACCAAT AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT 408 TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG 66296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG 468 ACTTGTTCAG GGTATGTTGT GTTGACAGGT CTAATAATTT TCTTTTTTAA CTTTCTTCTT 66356 |||||||||| | ACTTGTTCAG G......... .......... .......... .......... .......... 479 ACGCCCTGAA CCTATCTCTG TTTTTTTTTT CCTTAGAGCA AAAAAATTTC CCGGAATGAT 66416 |||| |||||||||| |||||||||| .......... .......... .......... ......AGCA AAAAAATTTC CCGGAATGAT 503 TTCA 66420 |||| TTCA 507 hqPGS_C08HBa0320P23.1+_SGN-E249967+ (63598 63797,64975 65072,66128 66307,66393 66420) ******************************************************************************** EST sequence 50 +strand 537 n (File: SGN-E237966+) 1 TTGATGTCTC CAGAGTTACT TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC 61 CTACAGAATT GGGGAACTGT CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG 121 GTGTTGGTGT GGGTACCAAT AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT 181 TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG 241 ACTTGTTCAG GAGCAAAAAA ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG 301 TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAGCCG CCTTCCGCAT 361 CTCCATGCTT TCTGAATGTG CCGAGTGGGG AGAGTAATTG TTGAGGCTGT ACCAGCAAGG 421 GTGGATCGCT GCGTGGTGGC GAAGAGTCCA CTTTTACCAA TCAAGCGTCG TCCTCTTCTC 481 TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT TTTGTGA Predicted gene structure (within gDNA segment 64402 to 68761): Exon 1 65002 65072 ( 71 n); cDNA 1 71 ( 71 n); score: 1.000 Intron 1 65073 66127 (1055 n); Pd: 0.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 66128 66307 ( 180 n); cDNA 72 251 ( 180 n); score: 1.000 Intron 2 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 3 66393 66488 ( 96 n); cDNA 252 347 ( 96 n); score: 1.000 Intron 3 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 67962 68151 ( 190 n); cDNA 348 537 ( 190 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E237966+ 1.000 537 1.000 C PGS_C08HBa0320P23.1+_SGN-E237966+ (65002 65072,66128 66307,66393 66488,67962 68151) Alignment (genomic DNA sequence = upper lines): TTGATGTCTC CAGAGTTACT TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC 65061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTCTC CAGAGTTACT TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC 60 CTACAGAATT GGTAATCCCT CACTCCACCC GATTCCCCGC CCCGAAAAAA AGAACAGCAA 65121 |||||||||| | CTACAGAATT G......... .......... .......... .......... .......... 71 GCATTAAAAA TTAAGTAAAT ATGATTGGTC TTTGTTGTTG TTTTGCTAAT ATGATTAAGG 65181 .......... .......... .......... .......... .......... .......... 71 TTAGTAAAAA AAGTTTTGAG GGGAAGGTAA CTAACGTGAG TTCTATTTTC CTTACTACAT 65241 .......... .......... .......... .......... .......... .......... 71 CTATATGGGG CAACATGAAG TGCATCTCTT GGCACAAGTT GATTGCTCCA GTGGGTACCT 65301 .......... .......... .......... .......... .......... .......... 71 TCTGTGCGCT CGTCTTCAGA AAACTGAACT TTGACTTGAA ATAGTATTCT TTGCTGCGGG 65361 .......... .......... .......... .......... .......... .......... 71 TGCACAAGAA TTTGCAATAT GAGGTTTGAA GGCTTTGTAT CAGCACATAT TTTTGTCTAT 65421 .......... .......... .......... .......... .......... .......... 71 ATATGAATTT TCATTCATTG ACAGTCCTTG GCGAACTTGT AAGAGGTGGA TAAAGTTAGC 65481 .......... .......... .......... .......... .......... .......... 71 TTCTCAGAGG ATGTGTGAAT TCTATAATTT TGATCATTTT GAAAGCAGAA CTGTTCTGAT 65541 .......... .......... .......... .......... .......... .......... 71 GTTGAGCATT GTTGCACTTG ATCTCCTCGC TTACGGTAAT CTTACTGTTG GAAGAAAGAG 65601 .......... .......... .......... .......... .......... .......... 71 AATGATCTCT TCTTTTAGTT GATTCTTCCG AGTCTGAGCA AAGGGTGTGT TTAGTTTCTG 65661 .......... .......... .......... .......... .......... .......... 71 TTGAGGAACT GTTCTCAAGT TTTAGCTAAA GGAGCATTCA GTATGATGAT ATCTTGACAC 65721 .......... .......... .......... .......... .......... .......... 71 CATAGGAAGC AAACTAGGTG ATAATTTTTT TTGTTTTGGC TTGTGACTTC TGTTGATGTT 65781 .......... .......... .......... .......... .......... .......... 71 GGCACGATAA TGAGATTGTC AATGCAATTG CTTTACAGAG CACATCTACA CGTAGAAACT 65841 .......... .......... .......... .......... .......... .......... 71 ATTAGGTGCA AGGCAGTTTT GCTTGTTTTA TAATTGGAAC TGTTCCGTTT GTTAAGAAAT 65901 .......... .......... .......... .......... .......... .......... 71 AACCTAGTCA AAACTCAAAA GATATATTTC TATTTTTAGT CTCTGCCTTC TTCCAGTGTT 65961 .......... .......... .......... .......... .......... .......... 71 TGCAATTTTG GGGAAAATTT ATTCCATTTT GCTCGATTTT TTTCTTCCAT TTAATAATTT 66021 .......... .......... .......... .......... .......... .......... 71 ATTGTTTACT TGCAAAGAAG TAAAAAAATT TCTTTGGATT TTTAGCCTAA GTCTTTCTCA 66081 .......... .......... .......... .......... .......... .......... 71 TTAAGTTGAT ATGCTTGTTT TAACATCTCC TGTTTTATGC TATTAGGGGA ACTGTCAGCA 66141 |||| |||||||||| .......... .......... .......... .......... ......GGGA ACTGTCAGCA 85 ATATCAATTT GTAAGAAACA TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC 66201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCAATTT GTAAGAAACA TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC 145 ACCTAAATCC CCCTGGATGC CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC 66261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAAATCC CCCTGGATGC CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC 205 TCCAAAAGAT TTGAAATTGG TTCATGCACA TTATGACTTG TTCAGGGTAT GTTGTGTTGA 66321 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCAAAAGAT TTGAAATTGG TTCATGCACA TTATGACTTG TTCAGG.... .......... 251 CAGGTCTAAT AATTTTCTTT TTTAACTTTC TTCTTACGCC CTGAACCTAT CTCTGTTTTT 66381 .......... .......... .......... .......... .......... .......... 251 TTTTTCCTTA GAGCAAAAAA ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG 66441 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .AGCAAAAAA ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG 300 TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAGGTA CTGTGCTCCG 66501 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAG... .......... 347 ATCCATATAT GATTTGGTAG TTTTGTACTT CCGATGGGGT GTTTGTTGAC AACTGCACTT 66561 .......... .......... .......... .......... .......... .......... 347 GTCTCGAATT GATATATTAA TTTTGGTTTA AGCGAAGTAG GAAAAAAAGT TGGTTTACTC 66621 .......... .......... .......... .......... .......... .......... 347 TTTAGTTTGG GTGGCAAGTT TTTCTCAATA AGTTTAGGTG GCATATGTAT CCTTTTATTT 66681 .......... .......... .......... .......... .......... .......... 347 TATATTTCCT TTTTGGTCCA AGAATCTCTC CTCTAGTTTA AAGTGTATTG AGACCTTACT 66741 .......... .......... .......... .......... .......... .......... 347 GTTGTCACTA TATAGTCAAT CTGGTTGTTT CTGTTGGTGG TGGTTGCTCG ATTCTTAAAT 66801 .......... .......... .......... .......... .......... .......... 347 GCCCTTGTTG TGGCGGCATT ATTATACTTT CTCCGTTGTC TTTTTCCTTT CTTTCCAAGG 66861 .......... .......... .......... .......... .......... .......... 347 AGTGAATTTT ATTCTGATGT ACTATCATCA TCATAAGAAT GCTTACAAGT AGGGGCGCGG 66921 .......... .......... .......... .......... .......... .......... 347 ATTACAGTAT GGGCAATGAT GAAATCCATT CCCTATATAA CTAATGATCC ACTAAATGTA 66981 .......... .......... .......... .......... .......... .......... 347 ATGCATGAGA TCGTCCTAAC ATCAGAACAA GAATCTGGTC ATTTCAAAAA CCTTAAAGAT 67041 .......... .......... .......... .......... .......... .......... 347 AATTTAGAAT CTAAAGGCTA GACAACATAG ATGTCTTAAT GTGATTAATT TATGTAGAGG 67101 .......... .......... .......... .......... .......... .......... 347 ACATGCATGT CAATTGGTAT ACTTTAGAAG TGGCTCTGGG ATTAATAATA TCATTAATAC 67161 .......... .......... .......... .......... .......... .......... 347 ACTCAGCTTT CACTTTAGTG TACCCAAGTC ACAAATGTTT TTATAATGAA GTTAGTAACT 67221 .......... .......... .......... .......... .......... .......... 347 TTACCTAAAT ATCATAGAAT CACTGAACTA TATTTTTAAT AAAAGTCTGT TACTGAGGAG 67281 .......... .......... .......... .......... .......... .......... 347 AGAAGCTAAA ATTTGCCTGA ATATCATGGA GTCGCTTAGA GGGAAACAAA TAAGACATTC 67341 .......... .......... .......... .......... .......... .......... 347 TGTATGATAT TTGAGTAAAG TGAATGATTC TTTTTATTAC AAAACATTGT TTAGTGACTT 67401 .......... .......... .......... .......... .......... .......... 347 CTAGTGATAT TTAGCCAAAG TTGAGTGACT ATTGACTTGT AAAGTACCAC TTTGTTCCTC 67461 .......... .......... .......... .......... .......... .......... 347 TTGTAGTGTT TTATTCAAGA ATTGATTGGA TTTGTTTTTA TGGTACATGA CAAATTTGTA 67521 .......... .......... .......... .......... .......... .......... 347 TTCCAATAAA TCAAAAACTA GATTGATTAG GAATTGAGTG GCAAGTGCAA TTTACTCTTT 67581 .......... .......... .......... .......... .......... .......... 347 AAGTATACCA TTTATTTGAC CTGTAGTACG TGGTACTGCA TATATTTTTA CCTGGATCTT 67641 .......... .......... .......... .......... .......... .......... 347 TGAATTTCTC AGATGTACGG GTGGAACTTG TTAAGTCTCG TCCCATGACG TGACTTCTCT 67701 .......... .......... .......... .......... .......... .......... 347 TGGTGACACA TTTTCCTGGG TTTATTTTAT TAGTCTGGTT GGTATAGGTC TTTACACGAC 67761 .......... .......... .......... .......... .......... .......... 347 TTATTAGTAC ATCTATTTGG GCCTTCCCTT TGTTGCTGTA TTCTCTGTCG TCTCTTTTGC 67821 .......... .......... .......... .......... .......... .......... 347 TTCTTTTATG TGGTGGGATT TATATATTCT ACTCTTGGTA AGTAAATGGA TGTGCAGTTT 67881 .......... .......... .......... .......... .......... .......... 347 TGGTATATGC AGGCTACTGA ATGAATAGTA TAGAATGTTA TCTGAGGGGG CCTTTAGAAG 67941 .......... .......... .......... .......... .......... .......... 347 TTTGTTCTTT ATGTTTGCAG CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG 68001 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG 387 GGGAGAGTAA TTGTTGAGGC TGTACCAGCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT 68061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAGTAA TTGTTGAGGC TGTACCAGCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT 447 CCACTTTTAC CAATCAAGCG TCGTCCTCTT CTCTCTATCT CTCTTTGTTT TTGGTGTTAT 68121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTTTTAC CAATCAAGCG TCGTCCTCTT CTCTCTATCT CTCTTTGTTT TTGGTGTTAT 507 GTAGCTTTAG TTTCTTTGAA CATTTTGTGA 68151 |||||||||| |||||||||| |||||||||| GTAGCTTTAG TTTCTTTGAA CATTTTGTGA 537 hqPGS_C08HBa0320P23.1+_SGN-E237966+ (65002 65072,66128 66307,66393 66488,67962 68151) ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E241379+) 1 TTGATGTCTT CAGAGTTACT TCTCAAGGAT CTGAGGAGCG AGTGGACTTG AATAAATTGC 61 CTACAGAATT GGGGAACTGT CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG 121 GTGTTGGTGT GGGTACCAAT AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT 181 TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG 241 ACTTGTTCAG GAGCAAAAAA ATTTTCCGGA ATGATTTCAT TATAAGGCTG AGGTTGATAG 301 TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAGCCG CCTTCCGCAT 361 CTCCATGCTT TCTGAATGTG CCGAGTGGGG AGAGTAATTG TTGAGGCTGT ACCACCAAGG 421 GTGGATCGCT GCGTGGTGGC GAAGAGTCCA CTTTTAC Predicted gene structure (within gDNA segment 64024 to 68681): Exon 1 65002 65072 ( 71 n); cDNA 1 71 ( 71 n); score: 0.958 Intron 1 65073 66127 (1055 n); Pd: 0.000 (s: 0.96), Pa: 0.990 (s: 1.00) Exon 2 66128 66307 ( 180 n); cDNA 72 251 ( 180 n); score: 1.000 Intron 2 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 0.96) Exon 3 66393 66488 ( 96 n); cDNA 252 347 ( 96 n); score: 0.979 Intron 3 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 67962 68071 ( 110 n); cDNA 348 457 ( 110 n); score: 0.991 MATCH C08HBa0320P23.1+ SGN-E241379+ 0.987 457 1.000 C PGS_C08HBa0320P23.1+_SGN-E241379+ (65002 65072,66128 66307,66393 66488,67962 68071) Alignment (genomic DNA sequence = upper lines): TTGATGTCTC CAGAGTTACT TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC 65061 ||||||||| |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| TTGATGTCTT CAGAGTTACT TCTCAAGGAT CTGAGGAGCG AGTGGACTTG AATAAATTGC 60 CTACAGAATT GGTAATCCCT CACTCCACCC GATTCCCCGC CCCGAAAAAA AGAACAGCAA 65121 |||||||||| | CTACAGAATT G......... .......... .......... .......... .......... 71 GCATTAAAAA TTAAGTAAAT ATGATTGGTC TTTGTTGTTG TTTTGCTAAT ATGATTAAGG 65181 .......... .......... .......... .......... .......... .......... 71 TTAGTAAAAA AAGTTTTGAG GGGAAGGTAA CTAACGTGAG TTCTATTTTC CTTACTACAT 65241 .......... .......... .......... .......... .......... .......... 71 CTATATGGGG CAACATGAAG TGCATCTCTT GGCACAAGTT GATTGCTCCA GTGGGTACCT 65301 .......... .......... .......... .......... .......... .......... 71 TCTGTGCGCT CGTCTTCAGA AAACTGAACT TTGACTTGAA ATAGTATTCT TTGCTGCGGG 65361 .......... .......... .......... .......... .......... .......... 71 TGCACAAGAA TTTGCAATAT GAGGTTTGAA GGCTTTGTAT CAGCACATAT TTTTGTCTAT 65421 .......... .......... .......... .......... .......... .......... 71 ATATGAATTT TCATTCATTG ACAGTCCTTG GCGAACTTGT AAGAGGTGGA TAAAGTTAGC 65481 .......... .......... .......... .......... .......... .......... 71 TTCTCAGAGG ATGTGTGAAT TCTATAATTT TGATCATTTT GAAAGCAGAA CTGTTCTGAT 65541 .......... .......... .......... .......... .......... .......... 71 GTTGAGCATT GTTGCACTTG ATCTCCTCGC TTACGGTAAT CTTACTGTTG GAAGAAAGAG 65601 .......... .......... .......... .......... .......... .......... 71 AATGATCTCT TCTTTTAGTT GATTCTTCCG AGTCTGAGCA AAGGGTGTGT TTAGTTTCTG 65661 .......... .......... .......... .......... .......... .......... 71 TTGAGGAACT GTTCTCAAGT TTTAGCTAAA GGAGCATTCA GTATGATGAT ATCTTGACAC 65721 .......... .......... .......... .......... .......... .......... 71 CATAGGAAGC AAACTAGGTG ATAATTTTTT TTGTTTTGGC TTGTGACTTC TGTTGATGTT 65781 .......... .......... .......... .......... .......... .......... 71 GGCACGATAA TGAGATTGTC AATGCAATTG CTTTACAGAG CACATCTACA CGTAGAAACT 65841 .......... .......... .......... .......... .......... .......... 71 ATTAGGTGCA AGGCAGTTTT GCTTGTTTTA TAATTGGAAC TGTTCCGTTT GTTAAGAAAT 65901 .......... .......... .......... .......... .......... .......... 71 AACCTAGTCA AAACTCAAAA GATATATTTC TATTTTTAGT CTCTGCCTTC TTCCAGTGTT 65961 .......... .......... .......... .......... .......... .......... 71 TGCAATTTTG GGGAAAATTT ATTCCATTTT GCTCGATTTT TTTCTTCCAT TTAATAATTT 66021 .......... .......... .......... .......... .......... .......... 71 ATTGTTTACT TGCAAAGAAG TAAAAAAATT TCTTTGGATT TTTAGCCTAA GTCTTTCTCA 66081 .......... .......... .......... .......... .......... .......... 71 TTAAGTTGAT ATGCTTGTTT TAACATCTCC TGTTTTATGC TATTAGGGGA ACTGTCAGCA 66141 |||| |||||||||| .......... .......... .......... .......... ......GGGA ACTGTCAGCA 85 ATATCAATTT GTAAGAAACA TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC 66201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCAATTT GTAAGAAACA TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC 145 ACCTAAATCC CCCTGGATGC CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC 66261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAAATCC CCCTGGATGC CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC 205 TCCAAAAGAT TTGAAATTGG TTCATGCACA TTATGACTTG TTCAGGGTAT GTTGTGTTGA 66321 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCAAAAGAT TTGAAATTGG TTCATGCACA TTATGACTTG TTCAGG.... .......... 251 CAGGTCTAAT AATTTTCTTT TTTAACTTTC TTCTTACGCC CTGAACCTAT CTCTGTTTTT 66381 .......... .......... .......... .......... .......... .......... 251 TTTTTCCTTA GAGCAAAAAA ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG 66441 ||||||||| |||| ||||| |||||||||| || ||||||| |||||||||| .......... .AGCAAAAAA ATTTTCCGGA ATGATTTCAT TATAAGGCTG AGGTTGATAG 300 TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAGGTA CTGTGCTCCG 66501 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA GTGTAAG... .......... 347 ATCCATATAT GATTTGGTAG TTTTGTACTT CCGATGGGGT GTTTGTTGAC AACTGCACTT 66561 .......... .......... .......... .......... .......... .......... 347 GTCTCGAATT GATATATTAA TTTTGGTTTA AGCGAAGTAG GAAAAAAAGT TGGTTTACTC 66621 .......... .......... .......... .......... .......... .......... 347 TTTAGTTTGG GTGGCAAGTT TTTCTCAATA AGTTTAGGTG GCATATGTAT CCTTTTATTT 66681 .......... .......... .......... .......... .......... .......... 347 TATATTTCCT TTTTGGTCCA AGAATCTCTC CTCTAGTTTA AAGTGTATTG AGACCTTACT 66741 .......... .......... .......... .......... .......... .......... 347 GTTGTCACTA TATAGTCAAT CTGGTTGTTT CTGTTGGTGG TGGTTGCTCG ATTCTTAAAT 66801 .......... .......... .......... .......... .......... .......... 347 GCCCTTGTTG TGGCGGCATT ATTATACTTT CTCCGTTGTC TTTTTCCTTT CTTTCCAAGG 66861 .......... .......... .......... .......... .......... .......... 347 AGTGAATTTT ATTCTGATGT ACTATCATCA TCATAAGAAT GCTTACAAGT AGGGGCGCGG 66921 .......... .......... .......... .......... .......... .......... 347 ATTACAGTAT GGGCAATGAT GAAATCCATT CCCTATATAA CTAATGATCC ACTAAATGTA 66981 .......... .......... .......... .......... .......... .......... 347 ATGCATGAGA TCGTCCTAAC ATCAGAACAA GAATCTGGTC ATTTCAAAAA CCTTAAAGAT 67041 .......... .......... .......... .......... .......... .......... 347 AATTTAGAAT CTAAAGGCTA GACAACATAG ATGTCTTAAT GTGATTAATT TATGTAGAGG 67101 .......... .......... .......... .......... .......... .......... 347 ACATGCATGT CAATTGGTAT ACTTTAGAAG TGGCTCTGGG ATTAATAATA TCATTAATAC 67161 .......... .......... .......... .......... .......... .......... 347 ACTCAGCTTT CACTTTAGTG TACCCAAGTC ACAAATGTTT TTATAATGAA GTTAGTAACT 67221 .......... .......... .......... .......... .......... .......... 347 TTACCTAAAT ATCATAGAAT CACTGAACTA TATTTTTAAT AAAAGTCTGT TACTGAGGAG 67281 .......... .......... .......... .......... .......... .......... 347 AGAAGCTAAA ATTTGCCTGA ATATCATGGA GTCGCTTAGA GGGAAACAAA TAAGACATTC 67341 .......... .......... .......... .......... .......... .......... 347 TGTATGATAT TTGAGTAAAG TGAATGATTC TTTTTATTAC AAAACATTGT TTAGTGACTT 67401 .......... .......... .......... .......... .......... .......... 347 CTAGTGATAT TTAGCCAAAG TTGAGTGACT ATTGACTTGT AAAGTACCAC TTTGTTCCTC 67461 .......... .......... .......... .......... .......... .......... 347 TTGTAGTGTT TTATTCAAGA ATTGATTGGA TTTGTTTTTA TGGTACATGA CAAATTTGTA 67521 .......... .......... .......... .......... .......... .......... 347 TTCCAATAAA TCAAAAACTA GATTGATTAG GAATTGAGTG GCAAGTGCAA TTTACTCTTT 67581 .......... .......... .......... .......... .......... .......... 347 AAGTATACCA TTTATTTGAC CTGTAGTACG TGGTACTGCA TATATTTTTA CCTGGATCTT 67641 .......... .......... .......... .......... .......... .......... 347 TGAATTTCTC AGATGTACGG GTGGAACTTG TTAAGTCTCG TCCCATGACG TGACTTCTCT 67701 .......... .......... .......... .......... .......... .......... 347 TGGTGACACA TTTTCCTGGG TTTATTTTAT TAGTCTGGTT GGTATAGGTC TTTACACGAC 67761 .......... .......... .......... .......... .......... .......... 347 TTATTAGTAC ATCTATTTGG GCCTTCCCTT TGTTGCTGTA TTCTCTGTCG TCTCTTTTGC 67821 .......... .......... .......... .......... .......... .......... 347 TTCTTTTATG TGGTGGGATT TATATATTCT ACTCTTGGTA AGTAAATGGA TGTGCAGTTT 67881 .......... .......... .......... .......... .......... .......... 347 TGGTATATGC AGGCTACTGA ATGAATAGTA TAGAATGTTA TCTGAGGGGG CCTTTAGAAG 67941 .......... .......... .......... .......... .......... .......... 347 TTTGTTCTTT ATGTTTGCAG CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG 68001 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG 387 GGGAGAGTAA TTGTTGAGGC TGTACCAGCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT 68061 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GGGAGAGTAA TTGTTGAGGC TGTACCACCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT 447 CCACTTTTAC 68071 |||||||||| CCACTTTTAC 457 hqPGS_C08HBa0320P23.1+_SGN-E241379+ (65002 65072,66128 66307,66393 66488,67962 68071) ******************************************************************************** EST sequence 29 +strand 205 n (File: SGN-E336669+) 1 TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG TACCTTCTGT 61 GCTCTCGTCT TCAAAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT GCTGGTGCAC 121 AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG TCTATATCTG 181 AATTTTCATC TCATTGACAG TCCTT Predicted gene structure (within gDNA segment 64647 to 66313): Exon 1 65247 65450 ( 204 n); cDNA 1 205 ( 205 n); score: 0.968 MATCH C08HBa0320P23.1+ SGN-E336669+ 0.968 204 0.995 C PGS_C08HBa0320P23.1+_SGN-E336669+ (65247 65450) Alignment (genomic DNA sequence = upper lines): TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG TACCTTCTGT 65306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG TACCTTCTGT 60 GCGCTCGTCT TCAGAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT GCGGGTGCAC 65366 || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| || ||||||| GCTCTCGTCT TCAAAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT GCTGGTGCAC 120 AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG TCTATATATG 65426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG TCTATATCTG 180 AATTTTCAT- TCATTGACAG TCCTT 65450 ||||||||| |||||||||| ||||| AATTTTCATC TCATTGACAG TCCTT 205 hqPGS_C08HBa0320P23.1+_SGN-E336669+ (65247 65450) ******************************************************************************** EST sequence 53 +strand 471 n (File: SGN-E285666+) 1 TCTCATTAAG TTGATATGCT TGTTTTAACA TCTCCTGTTT TATGCTATTA GGGGAACTGT 61 CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 121 AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 181 GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG GAGCAAAAAA 241 ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG TGGGTGATCA GTTATTGAAG 301 TCTACCATAA CCAATCTCCA GTGTAAGCCG CCTTCCGCAT CTCCATGCTT TCTGAATGTG 361 CCGAGTGGGG AGAGTAATTG TTGAGGCTGT ACCAGCAAGG GTGGATCGCT GCGTGGTGGC 421 GAAGAGTCCA CTTTTACCAA TCAAGCGTCN GCCTCTTCTC TCTATCTCTC T Predicted gene structure (within gDNA segment 65477 to 68715): Exon 1 66077 66307 ( 231 n); cDNA 1 231 ( 231 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 232 327 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68105 ( 144 n); cDNA 328 471 ( 144 n); score: 0.986 MATCH C08HBa0320P23.1+ SGN-E285666+ 0.996 471 1.000 C PGS_C08HBa0320P23.1+_SGN-E285666+ (66077 66307,66393 66488,67962 68105) Alignment (genomic DNA sequence = upper lines): TCTCATTAAG TTGATATGCT TGTTTTAACA TCTCCTGTTT TATGCTATTA GGGGAACTGT 66136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATTAAG TTGATATGCT TGTTTTAACA TCTCCTGTTT TATGCTATTA GGGGAACTGT 60 CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 66196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 120 AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 66256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 180 GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG GGTATGTTGT 66316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG G......... 231 GTTGACAGGT CTAATAATTT TCTTTTTTAA CTTTCTTCTT ACGCCCTGAA CCTATCTCTG 66376 .......... .......... .......... .......... .......... .......... 231 TTTTTTTTTT CCTTAGAGCA AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT 66436 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AGCA AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT 275 GATAGTGGGT GATCAGTTAT TGAAGTCTAC CATAACCAAT CTCCAGTGTA AGGTACTGTG 66496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATAGTGGGT GATCAGTTAT TGAAGTCTAC CATAACCAAT CTCCAGTGTA AG........ 327 CTCCGATCCA TATATGATTT GGTAGTTTTG TACTTCCGAT GGGGTGTTTG TTGACAACTG 66556 .......... .......... .......... .......... .......... .......... 327 CACTTGTCTC GAATTGATAT ATTAATTTTG GTTTAAGCGA AGTAGGAAAA AAAGTTGGTT 66616 .......... .......... .......... .......... .......... .......... 327 TACTCTTTAG TTTGGGTGGC AAGTTTTTCT CAATAAGTTT AGGTGGCATA TGTATCCTTT 66676 .......... .......... .......... .......... .......... .......... 327 TATTTTATAT TTCCTTTTTG GTCCAAGAAT CTCTCCTCTA GTTTAAAGTG TATTGAGACC 66736 .......... .......... .......... .......... .......... .......... 327 TTACTGTTGT CACTATATAG TCAATCTGGT TGTTTCTGTT GGTGGTGGTT GCTCGATTCT 66796 .......... .......... .......... .......... .......... .......... 327 TAAATGCCCT TGTTGTGGCG GCATTATTAT ACTTTCTCCG TTGTCTTTTT CCTTTCTTTC 66856 .......... .......... .......... .......... .......... .......... 327 CAAGGAGTGA ATTTTATTCT GATGTACTAT CATCATCATA AGAATGCTTA CAAGTAGGGG 66916 .......... .......... .......... .......... .......... .......... 327 CGCGGATTAC AGTATGGGCA ATGATGAAAT CCATTCCCTA TATAACTAAT GATCCACTAA 66976 .......... .......... .......... .......... .......... .......... 327 ATGTAATGCA TGAGATCGTC CTAACATCAG AACAAGAATC TGGTCATTTC AAAAACCTTA 67036 .......... .......... .......... .......... .......... .......... 327 AAGATAATTT AGAATCTAAA GGCTAGACAA CATAGATGTC TTAATGTGAT TAATTTATGT 67096 .......... .......... .......... .......... .......... .......... 327 AGAGGACATG CATGTCAATT GGTATACTTT AGAAGTGGCT CTGGGATTAA TAATATCATT 67156 .......... .......... .......... .......... .......... .......... 327 AATACACTCA GCTTTCACTT TAGTGTACCC AAGTCACAAA TGTTTTTATA ATGAAGTTAG 67216 .......... .......... .......... .......... .......... .......... 327 TAACTTTACC TAAATATCAT AGAATCACTG AACTATATTT TTAATAAAAG TCTGTTACTG 67276 .......... .......... .......... .......... .......... .......... 327 AGGAGAGAAG CTAAAATTTG CCTGAATATC ATGGAGTCGC TTAGAGGGAA ACAAATAAGA 67336 .......... .......... .......... .......... .......... .......... 327 CATTCTGTAT GATATTTGAG TAAAGTGAAT GATTCTTTTT ATTACAAAAC ATTGTTTAGT 67396 .......... .......... .......... .......... .......... .......... 327 GACTTCTAGT GATATTTAGC CAAAGTTGAG TGACTATTGA CTTGTAAAGT ACCACTTTGT 67456 .......... .......... .......... .......... .......... .......... 327 TCCTCTTGTA GTGTTTTATT CAAGAATTGA TTGGATTTGT TTTTATGGTA CATGACAAAT 67516 .......... .......... .......... .......... .......... .......... 327 TTGTATTCCA ATAAATCAAA AACTAGATTG ATTAGGAATT GAGTGGCAAG TGCAATTTAC 67576 .......... .......... .......... .......... .......... .......... 327 TCTTTAAGTA TACCATTTAT TTGACCTGTA GTACGTGGTA CTGCATATAT TTTTACCTGG 67636 .......... .......... .......... .......... .......... .......... 327 ATCTTTGAAT TTCTCAGATG TACGGGTGGA ACTTGTTAAG TCTCGTCCCA TGACGTGACT 67696 .......... .......... .......... .......... .......... .......... 327 TCTCTTGGTG ACACATTTTC CTGGGTTTAT TTTATTAGTC TGGTTGGTAT AGGTCTTTAC 67756 .......... .......... .......... .......... .......... .......... 327 ACGACTTATT AGTACATCTA TTTGGGCCTT CCCTTTGTTG CTGTATTCTC TGTCGTCTCT 67816 .......... .......... .......... .......... .......... .......... 327 TTTGCTTCTT TTATGTGGTG GGATTTATAT ATTCTACTCT TGGTAAGTAA ATGGATGTGC 67876 .......... .......... .......... .......... .......... .......... 327 AGTTTTGGTA TATGCAGGCT ACTGAATGAA TAGTATAGAA TGTTATCTGA GGGGGCCTTT 67936 .......... .......... .......... .......... .......... .......... 327 AGAAGTTTGT TCTTTATGTT TGCAGCCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC 67996 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC 362 GAGTGGGGAG AGTAATTGTT GAGGCTGTAC CAGCAAGGGT GGATCGCTGC GTGGTGGCGA 68056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGGGAG AGTAATTGTT GAGGCTGTAC CAGCAAGGGT GGATCGCTGC GTGGTGGCGA 422 AGAGTCCACT TTTACCAATC AAGCGTCGTC CTCTTCTCTC TATCTCTCT 68105 |||||||||| |||||||||| ||||||| | |||||||||| ||||||||| AGAGTCCACT TTTACCAATC AAGCGTCNGC CTCTTCTCTC TATCTCTCT 471 hqPGS_C08HBa0320P23.1+_SGN-E285666+ (66077 66307,66393 66488,67962 68105) ******************************************************************************** EST sequence 32 +strand 638 n (File: SGN-E556116+) 1 GTCTTCTGAG TTGCAGGGAC TGTCGTCTAG TTCTATTTTT TTGAAACGCA CTGCTGTCTC 61 TCTTGGTGTT GGTGAGTGTA CCATACTTTC CCCTTTCTCC GCCTCGGATG CCTTTCTCTA 121 TGTTATATCG GAGCTATTTC AGCTAAAGTG TCTCCAAAAG ATTTGAAATT GGTTCATGCA 181 CATTATGACT TGTTCGGGAG CAAAAAAATT TCCCGGAATG ATTTCATTAG AAGGCTGAGG 241 TTGATAGTGG GTGATCAGTT ATTGAAGTCT ACCATAACCA ATCTCCAGTG TAAGCCGCCT 301 TCCGCATCTC CATGCTTTCT GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC 361 AGCAAGGGTG GATCGCTGCG TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC 421 TCTTCTCTCT ATCTCTCTTT GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT 481 GTGATTATAT GCAGTTATGT CTAGACTTGC AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAAAAAA AAAAAAAAAA AATTCCGGGG GGGGGGCCCG GCCCCCCCCC CCCCCCTAGG 601 GGGGGTTTTT TAATTTTCCG GGGGCCTTTT TTAAAAAA Predicted gene structure (within gDNA segment 64566 to 70058): Exon 1 65563 65576 ( 14 n); cDNA 2 15 ( 14 n); score: 0.571 Intron 1 65577 66127 ( 551 n); Pd: 0.839 (s: 0), Pa: 0.990 (s: 0.56) Exon 2 66128 66307 ( 180 n); cDNA 16 198 ( 183 n); score: 0.783 Intron 2 66308 66392 ( 85 n); Pd: 0.916 (s: 0.98), Pa: 0.943 (s: 1.00) Exon 3 66393 66488 ( 96 n); cDNA 199 294 ( 96 n); score: 1.000 Intron 3 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 67962 68175 ( 214 n); cDNA 295 508 ( 214 n); score: 1.000 Intron 4 68176 68882 ( 707 n); Pd: 0.000 (s: 1.00), Pa: 0.563 (s: 0) Exon 5 68883 68898 ( 16 n); cDNA 509 524 ( 16 n); score: 0.688 MATCH C08HBa0320P23.1+ SGN-E556116+ 0.920 520 0.815 C PGS_C08HBa0320P23.1+_SGN-E556116+ (65563 65576,66128 66307,66393 66488,67962 68175,68883 68898) Alignment (genomic DNA sequence = upper lines): TCTCCTCGCT TACGGTAATC TTACTGTTGG AAGAAAGAGA ATGATCTCTT CTTTTAGTTG 65622 ||| || | | | TCTTCTGAGT TGCA...... .......... .......... .......... .......... 15 ATTCTTCCGA GTCTGAGCAA AGGGTGTGTT TAGTTTCTGT TGAGGAACTG TTCTCAAGTT 65682 .......... .......... .......... .......... .......... .......... 15 TTAGCTAAAG GAGCATTCAG TATGATGATA TCTTGACACC ATAGGAAGCA AACTAGGTGA 65742 .......... .......... .......... .......... .......... .......... 15 TAATTTTTTT TGTTTTGGCT TGTGACTTCT GTTGATGTTG GCACGATAAT GAGATTGTCA 65802 .......... .......... .......... .......... .......... .......... 15 ATGCAATTGC TTTACAGAGC ACATCTACAC GTAGAAACTA TTAGGTGCAA GGCAGTTTTG 65862 .......... .......... .......... .......... .......... .......... 15 CTTGTTTTAT AATTGGAACT GTTCCGTTTG TTAAGAAATA ACCTAGTCAA AACTCAAAAG 65922 .......... .......... .......... .......... .......... .......... 15 ATATATTTCT ATTTTTAGTC TCTGCCTTCT TCCAGTGTTT GCAATTTTGG GGAAAATTTA 65982 .......... .......... .......... .......... .......... .......... 15 TTCCATTTTG CTCGATTTTT TTCTTCCATT TAATAATTTA TTGTTTACTT GCAAAGAAGT 66042 .......... .......... .......... .......... .......... .......... 15 AAAAAAATTT CTTTGGATTT TTAGCCTAAG TCTTTCTCAT TAAGTTGATA TGCTTGTTTT 66102 .......... .......... .......... .......... .......... .......... 15 AACATCTCCT GTTTTATGCT ATTAGGGGAA CTGTCAGCAA TATCAATTTG TAAGAAACAT 66162 ||| | ||||| | | || |||| | ||||| .......... .......... .....GGG-A CTGTCGTCTA GTTCTATTTT TTTGAAACGC 49 ACAGCAATC- C-CATGGTGT TGGTGTGGGT ACCAATAAAT CACCTAAATC CCCCT-GGAT 66219 || || || | | |||||| ||||| | || |||| | | ||| || | ||| |||| ACTGCTGTCT CTCTTGGTGT TGGTGAGTGT ACCATACTTT CCCCTTTCTC CGCCTCGGAT 109 GCCTTTCTCT ATGTTAT-TC GGAGCTATTT CAGCTAAAGT GTCTCCAAAA GATTTGAAAT 66278 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTCTCT ATGTTATATC GGAGCTATTT CAGCTAAAGT GTCTCCAAAA GATTTGAAAT 169 TGGTTCATGC ACATTATGAC TTGTTCAGGG TATGTTGTGT TGACAGGTCT AATAATTTTC 66338 |||||||||| |||||||||| |||||| || TGGTTCATGC ACATTATGAC TTGTTCGGG. .......... .......... .......... 198 TTTTTTAACT TTCTTCTTAC GCCCTGAACC TATCTCTGTT TTTTTTTTCC TTAGAGCAAA 66398 |||||| .......... .......... .......... .......... .......... ....AGCAAA 204 AAAATTTCCC GGAATGATTT CATTAGAAGG CTGAGGTTGA TAGTGGGTGA TCAGTTATTG 66458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTCCC GGAATGATTT CATTAGAAGG CTGAGGTTGA TAGTGGGTGA TCAGTTATTG 264 AAGTCTACCA TAACCAATCT CCAGTGTAAG GTACTGTGCT CCGATCCATA TATGATTTGG 66518 |||||||||| |||||||||| |||||||||| AAGTCTACCA TAACCAATCT CCAGTGTAAG .......... .......... .......... 294 TAGTTTTGTA CTTCCGATGG GGTGTTTGTT GACAACTGCA CTTGTCTCGA ATTGATATAT 66578 .......... .......... .......... .......... .......... .......... 294 TAATTTTGGT TTAAGCGAAG TAGGAAAAAA AGTTGGTTTA CTCTTTAGTT TGGGTGGCAA 66638 .......... .......... .......... .......... .......... .......... 294 GTTTTTCTCA ATAAGTTTAG GTGGCATATG TATCCTTTTA TTTTATATTT CCTTTTTGGT 66698 .......... .......... .......... .......... .......... .......... 294 CCAAGAATCT CTCCTCTAGT TTAAAGTGTA TTGAGACCTT ACTGTTGTCA CTATATAGTC 66758 .......... .......... .......... .......... .......... .......... 294 AATCTGGTTG TTTCTGTTGG TGGTGGTTGC TCGATTCTTA AATGCCCTTG TTGTGGCGGC 66818 .......... .......... .......... .......... .......... .......... 294 ATTATTATAC TTTCTCCGTT GTCTTTTTCC TTTCTTTCCA AGGAGTGAAT TTTATTCTGA 66878 .......... .......... .......... .......... .......... .......... 294 TGTACTATCA TCATCATAAG AATGCTTACA AGTAGGGGCG CGGATTACAG TATGGGCAAT 66938 .......... .......... .......... .......... .......... .......... 294 GATGAAATCC ATTCCCTATA TAACTAATGA TCCACTAAAT GTAATGCATG AGATCGTCCT 66998 .......... .......... .......... .......... .......... .......... 294 AACATCAGAA CAAGAATCTG GTCATTTCAA AAACCTTAAA GATAATTTAG AATCTAAAGG 67058 .......... .......... .......... .......... .......... .......... 294 CTAGACAACA TAGATGTCTT AATGTGATTA ATTTATGTAG AGGACATGCA TGTCAATTGG 67118 .......... .......... .......... .......... .......... .......... 294 TATACTTTAG AAGTGGCTCT GGGATTAATA ATATCATTAA TACACTCAGC TTTCACTTTA 67178 .......... .......... .......... .......... .......... .......... 294 GTGTACCCAA GTCACAAATG TTTTTATAAT GAAGTTAGTA ACTTTACCTA AATATCATAG 67238 .......... .......... .......... .......... .......... .......... 294 AATCACTGAA CTATATTTTT AATAAAAGTC TGTTACTGAG GAGAGAAGCT AAAATTTGCC 67298 .......... .......... .......... .......... .......... .......... 294 TGAATATCAT GGAGTCGCTT AGAGGGAAAC AAATAAGACA TTCTGTATGA TATTTGAGTA 67358 .......... .......... .......... .......... .......... .......... 294 AAGTGAATGA TTCTTTTTAT TACAAAACAT TGTTTAGTGA CTTCTAGTGA TATTTAGCCA 67418 .......... .......... .......... .......... .......... .......... 294 AAGTTGAGTG ACTATTGACT TGTAAAGTAC CACTTTGTTC CTCTTGTAGT GTTTTATTCA 67478 .......... .......... .......... .......... .......... .......... 294 AGAATTGATT GGATTTGTTT TTATGGTACA TGACAAATTT GTATTCCAAT AAATCAAAAA 67538 .......... .......... .......... .......... .......... .......... 294 CTAGATTGAT TAGGAATTGA GTGGCAAGTG CAATTTACTC TTTAAGTATA CCATTTATTT 67598 .......... .......... .......... .......... .......... .......... 294 GACCTGTAGT ACGTGGTACT GCATATATTT TTACCTGGAT CTTTGAATTT CTCAGATGTA 67658 .......... .......... .......... .......... .......... .......... 294 CGGGTGGAAC TTGTTAAGTC TCGTCCCATG ACGTGACTTC TCTTGGTGAC ACATTTTCCT 67718 .......... .......... .......... .......... .......... .......... 294 GGGTTTATTT TATTAGTCTG GTTGGTATAG GTCTTTACAC GACTTATTAG TACATCTATT 67778 .......... .......... .......... .......... .......... .......... 294 TGGGCCTTCC CTTTGTTGCT GTATTCTCTG TCGTCTCTTT TGCTTCTTTT ATGTGGTGGG 67838 .......... .......... .......... .......... .......... .......... 294 ATTTATATAT TCTACTCTTG GTAAGTAAAT GGATGTGCAG TTTTGGTATA TGCAGGCTAC 67898 .......... .......... .......... .......... .......... .......... 294 TGAATGAATA GTATAGAATG TTATCTGAGG GGGCCTTTAG AAGTTTGTTC TTTATGTTTG 67958 .......... .......... .......... .......... .......... .......... 294 CAGCCGCCTT CCGCATCTCC ATGCTTTCTG AATGTGCCGA GTGGGGAGAG TAATTGTTGA 68018 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...CCGCCTT CCGCATCTCC ATGCTTTCTG AATGTGCCGA GTGGGGAGAG TAATTGTTGA 351 GGCTGTACCA GCAAGGGTGG ATCGCTGCGT GGTGGCGAAG AGTCCACTTT TACCAATCAA 68078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTACCA GCAAGGGTGG ATCGCTGCGT GGTGGCGAAG AGTCCACTTT TACCAATCAA 411 GCGTCGTCCT CTTCTCTCTA TCTCTCTTTG TTTTTGGTGT TATGTAGCTT TAGTTTCTTT 68138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTCGTCCT CTTCTCTCTA TCTCTCTTTG TTTTTGGTGT TATGTAGCTT TAGTTTCTTT 471 GAACATTTTG TGATTATATG CAGTTATGTC TAGACTTGCA CCTTCTGTTC TTCTATATAT 68198 |||||||||| |||||||||| |||||||||| ||||||| GAACATTTTG TGATTATATG CAGTTATGTC TAGACTT... .......... .......... 508 GCGACTTCCA ATTCTCTCCC GTCTGTGATG GCAATAATTG GTGCACAGCA GGAGTTACTG 68258 .......... .......... .......... .......... .......... .......... 508 GAGCTTAAAT TGGTTTTAGG TTGGCATCTT GAAAGTGCTG CTAGTCGGTT TAATCATGGT 68318 .......... .......... .......... .......... .......... .......... 508 TTGAAGAGAA TAAAACTGTA GCAAACATCG GTGGCGTTGT ATTTTAACAA AAACTTAGGC 68378 .......... .......... .......... .......... .......... .......... 508 ATTGTACTGT TATCACTTTG AAGCTGAGGG GTGAAATTTT TCCTTTGAGT TTTCGCATTA 68438 .......... .......... .......... .......... .......... .......... 508 TTATGTTTCT AATTCACTTG CCTAAAAATT CTTGAACATT GTTATAATAG CCTTCTGGTA 68498 .......... .......... .......... .......... .......... .......... 508 TGAACTTGTA ATATTTCACT GGTACAATAT GAATTTCTCT AGAATCGATT TTCATGTATA 68558 .......... .......... .......... .......... .......... .......... 508 CTGCATATAG TAAGTGGTAC ACTCTGCGCG AAATTATTCC TTAATAACTA CTCAAATATT 68618 .......... .......... .......... .......... .......... .......... 508 TTGTATAAAA ATGAAATGTT AGAATATCCA TGAAAATCAA GTTTAATCTT TTTCACATAA 68678 .......... .......... .......... .......... .......... .......... 508 TTTTTAAGTT CAGGAGAATT GTATTTAACG TATGCTCATC AATTATGCAG ATAAATTTCA 68738 .......... .......... .......... .......... .......... .......... 508 CGGGGAAAAA ATATTGTTAT TCTTTACATC CATATATTCA TTTGGTTGAA TTGGTTAATA 68798 .......... .......... .......... .......... .......... .......... 508 ATACATTCTT TCGTTTTGCT AAGTGATATG TAAACATTAG ATATAAATAT ATTATACGTA 68858 .......... .......... .......... .......... .......... .......... 508 TGTAAGAACA CCTCACTAAT GCAGTCACAA CAATGAAAAA 68898 || || || ||||| .......... .......... ....GCAAAA AAAAAAAAAA 524 hqPGS_C08HBa0320P23.1+_SGN-E556116+ (66128 66307,66393 66488,67962 68175) ******************************************************************************** EST sequence 20 +strand 596 n (File: SGN-E552829+) 1 GCCTACAGAA TTGGGGAACT GTCAGCAATA TCAATTTGTA AGAAACATAC AGCAATCCCA 61 TGGTGTTGGT GTGGGTACCA ATAAATCACC TAAATCCCCC TGGATGCCTT TCTCTATGTT 121 ATTCGGAGCT ATTTCAGCTA AAGTGTCTCC AAAAGATTTG AAATTGGTTC ATGCACATTA 181 TGACTTGTTC AGGAGCAAAA AAATTTCCCG GAATGATTTC ATTAGAAGGC TGAGGTTGAT 241 AGTGGGTGAT CAGTTATTGA AGTCTACCAT AACCAATCTC CAGTGTAAGC CGCCTTCCGC 301 ATCTCCATGC TTTCTGAATG TGCCGAGTGG GGAGAGTAAT TGTTGAGGCT GTACCAGCAA 361 GGGTGGATCG CTGCGTGGTG GCGAAGAGTC CACTTTTACC AATCAAGCGT CGTCCTCTTC 421 TCTCTATCTC TCTTTGTTTT TGGTGTTATG TAGCTTTAGT TTCTTTGAAC ATTTTGTGAT 481 TATATGCAGT TATGTCTAGA CTTGCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAAAAAA AAAAATCTGG GGGGGGGGGC CGGGCCCCCT TTCCCCCCTA AGGGGG Predicted gene structure (within gDNA segment 65407 to 69688): Exon 1 66128 66307 ( 180 n); cDNA 14 193 ( 180 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 194 289 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68175 ( 214 n); cDNA 290 503 ( 214 n); score: 1.000 Intron 3 68176 68882 ( 707 n); Pd: 0.000 (s: 1.00), Pa: 0.563 (s: 0) Exon 4 68883 68898 ( 16 n); cDNA 504 519 ( 16 n); score: 0.688 PPA cDNA 546 556 MATCH C08HBa0320P23.1+ SGN-E552829+ 1.000 506 0.849 C PGS_C08HBa0320P23.1+_SGN-E552829+ (66128 66307,66393 66488,67962 68175,68883 68898) Alignment (genomic DNA sequence = upper lines): GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 66187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 73 GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 66247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 133 TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 66307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 193 GTATGTTGTG TTGACAGGTC TAATAATTTT CTTTTTTAAC TTTCTTCTTA CGCCCTGAAC 66367 .......... .......... .......... .......... .......... .......... 193 CTATCTCTGT TTTTTTTTTC CTTAGAGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 66427 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 228 GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 66487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 288 GGTACTGTGC TCCGATCCAT ATATGATTTG GTAGTTTTGT ACTTCCGATG GGGTGTTTGT 66547 | G......... .......... .......... .......... .......... .......... 289 TGACAACTGC ACTTGTCTCG AATTGATATA TTAATTTTGG TTTAAGCGAA GTAGGAAAAA 66607 .......... .......... .......... .......... .......... .......... 289 AAGTTGGTTT ACTCTTTAGT TTGGGTGGCA AGTTTTTCTC AATAAGTTTA GGTGGCATAT 66667 .......... .......... .......... .......... .......... .......... 289 GTATCCTTTT ATTTTATATT TCCTTTTTGG TCCAAGAATC TCTCCTCTAG TTTAAAGTGT 66727 .......... .......... .......... .......... .......... .......... 289 ATTGAGACCT TACTGTTGTC ACTATATAGT CAATCTGGTT GTTTCTGTTG GTGGTGGTTG 66787 .......... .......... .......... .......... .......... .......... 289 CTCGATTCTT AAATGCCCTT GTTGTGGCGG CATTATTATA CTTTCTCCGT TGTCTTTTTC 66847 .......... .......... .......... .......... .......... .......... 289 CTTTCTTTCC AAGGAGTGAA TTTTATTCTG ATGTACTATC ATCATCATAA GAATGCTTAC 66907 .......... .......... .......... .......... .......... .......... 289 AAGTAGGGGC GCGGATTACA GTATGGGCAA TGATGAAATC CATTCCCTAT ATAACTAATG 66967 .......... .......... .......... .......... .......... .......... 289 ATCCACTAAA TGTAATGCAT GAGATCGTCC TAACATCAGA ACAAGAATCT GGTCATTTCA 67027 .......... .......... .......... .......... .......... .......... 289 AAAACCTTAA AGATAATTTA GAATCTAAAG GCTAGACAAC ATAGATGTCT TAATGTGATT 67087 .......... .......... .......... .......... .......... .......... 289 AATTTATGTA GAGGACATGC ATGTCAATTG GTATACTTTA GAAGTGGCTC TGGGATTAAT 67147 .......... .......... .......... .......... .......... .......... 289 AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT GTTTTTATAA 67207 .......... .......... .......... .......... .......... .......... 289 TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT TAATAAAAGT 67267 .......... .......... .......... .......... .......... .......... 289 CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT TAGAGGGAAA 67327 .......... .......... .......... .......... .......... .......... 289 CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA TTACAAAACA 67387 .......... .......... .......... .......... .......... .......... 289 TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC TTGTAAAGTA 67447 .......... .......... .......... .......... .......... .......... 289 CCACTTTGTT CCTCTTGTAG TGTTTTATTC AAGAATTGAT TGGATTTGTT TTTATGGTAC 67507 .......... .......... .......... .......... .......... .......... 289 ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAGGAATTG AGTGGCAAGT 67567 .......... .......... .......... .......... .......... .......... 289 GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGTAG TACGTGGTAC TGCATATATT 67627 .......... .......... .......... .......... .......... .......... 289 TTTACCTGGA TCTTTGAATT TCTCAGATGT ACGGGTGGAA CTTGTTAAGT CTCGTCCCAT 67687 .......... .......... .......... .......... .......... .......... 289 GACGTGACTT CTCTTGGTGA CACATTTTCC TGGGTTTATT TTATTAGTCT GGTTGGTATA 67747 .......... .......... .......... .......... .......... .......... 289 GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCTTC CCTTTGTTGC TGTATTCTCT 67807 .......... .......... .......... .......... .......... .......... 289 GTCGTCTCTT TTGCTTCTTT TATGTGGTGG GATTTATATA TTCTACTCTT GGTAAGTAAA 67867 .......... .......... .......... .......... .......... .......... 289 TGGATGTGCA GTTTTGGTAT ATGCAGGCTA CTGAATGAAT AGTATAGAAT GTTATCTGAG 67927 .......... .......... .......... .......... .......... .......... 289 GGGGCCTTTA GAAGTTTGTT CTTTATGTTT GCAGCCGCCT TCCGCATCTC CATGCTTTCT 67987 |||||| |||||||||| |||||||||| .......... .......... .......... ....CCGCCT TCCGCATCTC CATGCTTTCT 315 GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 68047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 375 TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 68107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 435 GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 68167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 495 CTAGACTTGC ACCTTCTGTT CTTCTATATA TGCGACTTCC AATTCTCTCC CGTCTGTGAT 68227 |||||||| CTAGACTT.. .......... .......... .......... .......... .......... 503 GGCAATAATT GGTGCACAGC AGGAGTTACT GGAGCTTAAA TTGGTTTTAG GTTGGCATCT 68287 .......... .......... .......... .......... .......... .......... 503 TGAAAGTGCT GCTAGTCGGT TTAATCATGG TTTGAAGAGA ATAAAACTGT AGCAAACATC 68347 .......... .......... .......... .......... .......... .......... 503 GGTGGCGTTG TATTTTAACA AAAACTTAGG CATTGTACTG TTATCACTTT GAAGCTGAGG 68407 .......... .......... .......... .......... .......... .......... 503 GGTGAAATTT TTCCTTTGAG TTTTCGCATT ATTATGTTTC TAATTCACTT GCCTAAAAAT 68467 .......... .......... .......... .......... .......... .......... 503 TCTTGAACAT TGTTATAATA GCCTTCTGGT ATGAACTTGT AATATTTCAC TGGTACAATA 68527 .......... .......... .......... .......... .......... .......... 503 TGAATTTCTC TAGAATCGAT TTTCATGTAT ACTGCATATA GTAAGTGGTA CACTCTGCGC 68587 .......... .......... .......... .......... .......... .......... 503 GAAATTATTC CTTAATAACT ACTCAAATAT TTTGTATAAA AATGAAATGT TAGAATATCC 68647 .......... .......... .......... .......... .......... .......... 503 ATGAAAATCA AGTTTAATCT TTTTCACATA ATTTTTAAGT TCAGGAGAAT TGTATTTAAC 68707 .......... .......... .......... .......... .......... .......... 503 GTATGCTCAT CAATTATGCA GATAAATTTC ACGGGGAAAA AATATTGTTA TTCTTTACAT 68767 .......... .......... .......... .......... .......... .......... 503 CCATATATTC ATTTGGTTGA ATTGGTTAAT AATACATTCT TTCGTTTTGC TAAGTGATAT 68827 .......... .......... .......... .......... .......... .......... 503 GTAAACATTA GATATAAATA TATTATACGT ATGTAAGAAC ACCTCACTAA TGCAGTCACA 68887 || | .......... .......... .......... .......... .......... .....GCAAA 508 ACAATGAAAA A 68898 | || |||| | AAAAAAAAAA A 519 hqPGS_C08HBa0320P23.1+_SGN-E552829+ (66128 66307,66393 66488,67962 68175) ******************************************************************************** EST sequence 18 +strand 549 n (File: SGN-E552607+) 1 GCCTACAGAA TTGGGGAACT GTCAGCAATA TCAATTTGTA AGAAACATAC AGCAATCCCA 61 TGGTGTTGGT GTGGGTACCA ATAAATCACC TAAATCCCCC TGGATGCCTT TCTCTATGTT 121 ATTCGGAGCT ATTTCAGCTA AAGTGTCTCC AAAAGATTTG AAATTGGTTC ATGCACATTA 181 TGACTTGTTC AGGAGCAAAA AAATTTCCCG GAATGATTTC ATTAGAAGGC TGAGGTTGAT 241 AGTGGGTGAT CAGTTATTGA AGTCTACCAT AACCAATCTC CAGTGTAAGC CGCCTTCCGC 301 ATCTCCATGC TTTCTGAATG TGCCGAGTGG GGAGAGTAAT TGTTGAGGCT GTACCAGCAA 361 GGGTGGATCG CTGCGTGGTG GCGAAGAGTC CACTTTTACC AATCAAGCGT CGTCCTCTTC 421 TCTCTATCTC TCTTTGTTTT TGGTGTTATG TAGCTTTAGT TTCTTTGAAC ATTTTGTGAT 481 TATATGCAGT TATGTCTAGA CTTGCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAAAAA Predicted gene structure (within gDNA segment 65407 to 69218): Exon 1 66128 66307 ( 180 n); cDNA 14 193 ( 180 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 194 289 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68175 ( 214 n); cDNA 290 503 ( 214 n); score: 1.000 PPA cDNA 506 549 MATCH C08HBa0320P23.1+ SGN-E552607+ 1.000 490 0.893 C PGS_C08HBa0320P23.1+_SGN-E552607+ (66128 66307,66393 66488,67962 68175) Alignment (genomic DNA sequence = upper lines): GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 66187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 73 GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 66247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 133 TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 66307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 193 GTATGTTGTG TTGACAGGTC TAATAATTTT CTTTTTTAAC TTTCTTCTTA CGCCCTGAAC 66367 .......... .......... .......... .......... .......... .......... 193 CTATCTCTGT TTTTTTTTTC CTTAGAGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 66427 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 228 GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 66487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 288 GGTACTGTGC TCCGATCCAT ATATGATTTG GTAGTTTTGT ACTTCCGATG GGGTGTTTGT 66547 | G......... .......... .......... .......... .......... .......... 289 TGACAACTGC ACTTGTCTCG AATTGATATA TTAATTTTGG TTTAAGCGAA GTAGGAAAAA 66607 .......... .......... .......... .......... .......... .......... 289 AAGTTGGTTT ACTCTTTAGT TTGGGTGGCA AGTTTTTCTC AATAAGTTTA GGTGGCATAT 66667 .......... .......... .......... .......... .......... .......... 289 GTATCCTTTT ATTTTATATT TCCTTTTTGG TCCAAGAATC TCTCCTCTAG TTTAAAGTGT 66727 .......... .......... .......... .......... .......... .......... 289 ATTGAGACCT TACTGTTGTC ACTATATAGT CAATCTGGTT GTTTCTGTTG GTGGTGGTTG 66787 .......... .......... .......... .......... .......... .......... 289 CTCGATTCTT AAATGCCCTT GTTGTGGCGG CATTATTATA CTTTCTCCGT TGTCTTTTTC 66847 .......... .......... .......... .......... .......... .......... 289 CTTTCTTTCC AAGGAGTGAA TTTTATTCTG ATGTACTATC ATCATCATAA GAATGCTTAC 66907 .......... .......... .......... .......... .......... .......... 289 AAGTAGGGGC GCGGATTACA GTATGGGCAA TGATGAAATC CATTCCCTAT ATAACTAATG 66967 .......... .......... .......... .......... .......... .......... 289 ATCCACTAAA TGTAATGCAT GAGATCGTCC TAACATCAGA ACAAGAATCT GGTCATTTCA 67027 .......... .......... .......... .......... .......... .......... 289 AAAACCTTAA AGATAATTTA GAATCTAAAG GCTAGACAAC ATAGATGTCT TAATGTGATT 67087 .......... .......... .......... .......... .......... .......... 289 AATTTATGTA GAGGACATGC ATGTCAATTG GTATACTTTA GAAGTGGCTC TGGGATTAAT 67147 .......... .......... .......... .......... .......... .......... 289 AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT GTTTTTATAA 67207 .......... .......... .......... .......... .......... .......... 289 TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT TAATAAAAGT 67267 .......... .......... .......... .......... .......... .......... 289 CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT TAGAGGGAAA 67327 .......... .......... .......... .......... .......... .......... 289 CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA TTACAAAACA 67387 .......... .......... .......... .......... .......... .......... 289 TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC TTGTAAAGTA 67447 .......... .......... .......... .......... .......... .......... 289 CCACTTTGTT CCTCTTGTAG TGTTTTATTC AAGAATTGAT TGGATTTGTT TTTATGGTAC 67507 .......... .......... .......... .......... .......... .......... 289 ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAGGAATTG AGTGGCAAGT 67567 .......... .......... .......... .......... .......... .......... 289 GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGTAG TACGTGGTAC TGCATATATT 67627 .......... .......... .......... .......... .......... .......... 289 TTTACCTGGA TCTTTGAATT TCTCAGATGT ACGGGTGGAA CTTGTTAAGT CTCGTCCCAT 67687 .......... .......... .......... .......... .......... .......... 289 GACGTGACTT CTCTTGGTGA CACATTTTCC TGGGTTTATT TTATTAGTCT GGTTGGTATA 67747 .......... .......... .......... .......... .......... .......... 289 GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCTTC CCTTTGTTGC TGTATTCTCT 67807 .......... .......... .......... .......... .......... .......... 289 GTCGTCTCTT TTGCTTCTTT TATGTGGTGG GATTTATATA TTCTACTCTT GGTAAGTAAA 67867 .......... .......... .......... .......... .......... .......... 289 TGGATGTGCA GTTTTGGTAT ATGCAGGCTA CTGAATGAAT AGTATAGAAT GTTATCTGAG 67927 .......... .......... .......... .......... .......... .......... 289 GGGGCCTTTA GAAGTTTGTT CTTTATGTTT GCAGCCGCCT TCCGCATCTC CATGCTTTCT 67987 |||||| |||||||||| |||||||||| .......... .......... .......... ....CCGCCT TCCGCATCTC CATGCTTTCT 315 GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 68047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 375 TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 68107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 435 GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 68167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 495 CTAGACTT 68175 |||||||| CTAGACTT 503 hqPGS_C08HBa0320P23.1+_SGN-E552607+ (66128 66307,66393 66488,67962 68175) ******************************************************************************** EST sequence 21 +strand 549 n (File: SGN-E552891+) 1 GCCTACAGAA TTGGGGAACT GTCAGCAATA TCAATTTGTA AGAAACATAC AGCAATCCCA 61 TGGTGTTGGT GTGGGTACCA ATAAATCACC TAAATCCCCC TGGATGCCTT TCTCTATGTT 121 ATTCGGAGCT ATTTCAGCTA AAGTGTCTCC AAAAGATTTG AAATTGGTTC ATGCACATTA 181 TGACTTGTTC AGGAGCAAAA AAATTTCCCG GAATGATTTC ATTAGAAGGC TGAGGTTGAT 241 AGTGGGTGAT CAGTTATTGA AGTCTACCAT AACCAATCTC CAGTGTAAGC CGCCTTCCGC 301 ATCTCCATGC TTTCTGAATG TGCCGAGTGG GGAGAGTAAT TGTTGAGGCT GTACCAGCAA 361 GGGTGGATCG CTGCGTGGTG GCGAAGAGTC CACTTTTACC AATCAAGCGT CGTCCTCTTC 421 TCTCTATCTC TCTTTGTTTT TGGTGTTATG TAGCTTTAGT TTCTTTGAAC ATTTTGTGAT 481 TATATGCAGT TATGTCTAGA CTTGCNAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAAAAA Predicted gene structure (within gDNA segment 65407 to 69227): Exon 1 66128 66307 ( 180 n); cDNA 14 193 ( 180 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 194 289 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68175 ( 214 n); cDNA 290 503 ( 214 n); score: 1.000 PPA cDNA 507 549 MATCH C08HBa0320P23.1+ SGN-E552891+ 1.000 490 0.893 C PGS_C08HBa0320P23.1+_SGN-E552891+ (66128 66307,66393 66488,67962 68175) Alignment (genomic DNA sequence = upper lines): GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 66187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACTGTC AGCAATATCA ATTTGTAAGA AACATACAGC AATCCCATGG TGTTGGTGTG 73 GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 66247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACCAATA AATCACCTAA ATCCCCCTGG ATGCCTTTCT CTATGTTATT CGGAGCTATT 133 TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 66307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 193 GTATGTTGTG TTGACAGGTC TAATAATTTT CTTTTTTAAC TTTCTTCTTA CGCCCTGAAC 66367 .......... .......... .......... .......... .......... .......... 193 CTATCTCTGT TTTTTTTTTC CTTAGAGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 66427 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 228 GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 66487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 288 GGTACTGTGC TCCGATCCAT ATATGATTTG GTAGTTTTGT ACTTCCGATG GGGTGTTTGT 66547 | G......... .......... .......... .......... .......... .......... 289 TGACAACTGC ACTTGTCTCG AATTGATATA TTAATTTTGG TTTAAGCGAA GTAGGAAAAA 66607 .......... .......... .......... .......... .......... .......... 289 AAGTTGGTTT ACTCTTTAGT TTGGGTGGCA AGTTTTTCTC AATAAGTTTA GGTGGCATAT 66667 .......... .......... .......... .......... .......... .......... 289 GTATCCTTTT ATTTTATATT TCCTTTTTGG TCCAAGAATC TCTCCTCTAG TTTAAAGTGT 66727 .......... .......... .......... .......... .......... .......... 289 ATTGAGACCT TACTGTTGTC ACTATATAGT CAATCTGGTT GTTTCTGTTG GTGGTGGTTG 66787 .......... .......... .......... .......... .......... .......... 289 CTCGATTCTT AAATGCCCTT GTTGTGGCGG CATTATTATA CTTTCTCCGT TGTCTTTTTC 66847 .......... .......... .......... .......... .......... .......... 289 CTTTCTTTCC AAGGAGTGAA TTTTATTCTG ATGTACTATC ATCATCATAA GAATGCTTAC 66907 .......... .......... .......... .......... .......... .......... 289 AAGTAGGGGC GCGGATTACA GTATGGGCAA TGATGAAATC CATTCCCTAT ATAACTAATG 66967 .......... .......... .......... .......... .......... .......... 289 ATCCACTAAA TGTAATGCAT GAGATCGTCC TAACATCAGA ACAAGAATCT GGTCATTTCA 67027 .......... .......... .......... .......... .......... .......... 289 AAAACCTTAA AGATAATTTA GAATCTAAAG GCTAGACAAC ATAGATGTCT TAATGTGATT 67087 .......... .......... .......... .......... .......... .......... 289 AATTTATGTA GAGGACATGC ATGTCAATTG GTATACTTTA GAAGTGGCTC TGGGATTAAT 67147 .......... .......... .......... .......... .......... .......... 289 AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT GTTTTTATAA 67207 .......... .......... .......... .......... .......... .......... 289 TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT TAATAAAAGT 67267 .......... .......... .......... .......... .......... .......... 289 CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT TAGAGGGAAA 67327 .......... .......... .......... .......... .......... .......... 289 CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA TTACAAAACA 67387 .......... .......... .......... .......... .......... .......... 289 TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC TTGTAAAGTA 67447 .......... .......... .......... .......... .......... .......... 289 CCACTTTGTT CCTCTTGTAG TGTTTTATTC AAGAATTGAT TGGATTTGTT TTTATGGTAC 67507 .......... .......... .......... .......... .......... .......... 289 ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAGGAATTG AGTGGCAAGT 67567 .......... .......... .......... .......... .......... .......... 289 GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGTAG TACGTGGTAC TGCATATATT 67627 .......... .......... .......... .......... .......... .......... 289 TTTACCTGGA TCTTTGAATT TCTCAGATGT ACGGGTGGAA CTTGTTAAGT CTCGTCCCAT 67687 .......... .......... .......... .......... .......... .......... 289 GACGTGACTT CTCTTGGTGA CACATTTTCC TGGGTTTATT TTATTAGTCT GGTTGGTATA 67747 .......... .......... .......... .......... .......... .......... 289 GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCTTC CCTTTGTTGC TGTATTCTCT 67807 .......... .......... .......... .......... .......... .......... 289 GTCGTCTCTT TTGCTTCTTT TATGTGGTGG GATTTATATA TTCTACTCTT GGTAAGTAAA 67867 .......... .......... .......... .......... .......... .......... 289 TGGATGTGCA GTTTTGGTAT ATGCAGGCTA CTGAATGAAT AGTATAGAAT GTTATCTGAG 67927 .......... .......... .......... .......... .......... .......... 289 GGGGCCTTTA GAAGTTTGTT CTTTATGTTT GCAGCCGCCT TCCGCATCTC CATGCTTTCT 67987 |||||| |||||||||| |||||||||| .......... .......... .......... ....CCGCCT TCCGCATCTC CATGCTTTCT 315 GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 68047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 375 TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 68107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 435 GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 68167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 495 CTAGACTT 68175 |||||||| CTAGACTT 503 hqPGS_C08HBa0320P23.1+_SGN-E552891+ (66128 66307,66393 66488,67962 68175) ******************************************************************************** EST sequence 85 -strand 520 n (File: SGN-E278920-) 1 CAATTTGTAA GAAACATACA GCAATCCCAT GGTGTTGGTG TGGGTACCAA TAAATCACCT 61 AAATCCCCCT GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA 121 AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GGAGCAAAAA AATTTCCCGG 181 AATGATTTCA TTAGAAGGCT GAGGTTGATA GTGGGTGATC AGTTATTGAA GTCTACCATA 241 ACCAATCTCC AGTGTAAGCC GCCTTCCGCA TCTCCATGCT TTCTGAATGT GCCGAGTGGG 301 GAGAGTAATT GTTGAGGCTG TACCAGCAAG GGTGGATCGC TGCGTGGTGG CGAAGAGTCC 361 ACTTTTACCA ATCAAGCGTC GTCCTCTTCT CTCTATCTCT CTTTGTTTTT GGTGTTATGT 421 AGCTTTAGTT TCTTTGAACA TTTTGTGATT ATATGCAGTT ATGTCTAGAC TTGCACCTTC 481 TGTTCTTCTA TATATGCGAC TTCCAATTCA AAAAAAAAAA Predicted gene structure (within gDNA segment 65536 to 68922): Exon 1 66146 66307 ( 162 n); cDNA 1 162 ( 162 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 163 258 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68212 ( 251 n); cDNA 259 509 ( 251 n); score: 1.000 PPA cDNA 510 520 MATCH C08HBa0320P23.1+ SGN-E278920- 1.000 509 0.979 C PGS_C08HBa0320P23.1+_SGN-E278920- (66146 66307,66393 66488,67962 68212) Alignment (genomic DNA sequence = upper lines): CAATTTGTAA GAAACATACA GCAATCCCAT GGTGTTGGTG TGGGTACCAA TAAATCACCT 66205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTGTAA GAAACATACA GCAATCCCAT GGTGTTGGTG TGGGTACCAA TAAATCACCT 60 AAATCCCCCT GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA 66265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCCCCCT GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA 120 AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG TGTTGACAGG 66325 |||||||||| |||||||||| |||||||||| |||||||||| || AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GG........ .......... 162 TCTAATAATT TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT GTTTTTTTTT 66385 .......... .......... .......... .......... .......... .......... 162 TCCTTAGAGC AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG 66445 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGC AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG 215 TGATCAGTTA TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAGGTACTGT GCTCCGATCC 66505 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATCAGTTA TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAG....... .......... 258 ATATATGATT TGGTAGTTTT GTACTTCCGA TGGGGTGTTT GTTGACAACT GCACTTGTCT 66565 .......... .......... .......... .......... .......... .......... 258 CGAATTGATA TATTAATTTT GGTTTAAGCG AAGTAGGAAA AAAAGTTGGT TTACTCTTTA 66625 .......... .......... .......... .......... .......... .......... 258 GTTTGGGTGG CAAGTTTTTC TCAATAAGTT TAGGTGGCAT ATGTATCCTT TTATTTTATA 66685 .......... .......... .......... .......... .......... .......... 258 TTTCCTTTTT GGTCCAAGAA TCTCTCCTCT AGTTTAAAGT GTATTGAGAC CTTACTGTTG 66745 .......... .......... .......... .......... .......... .......... 258 TCACTATATA GTCAATCTGG TTGTTTCTGT TGGTGGTGGT TGCTCGATTC TTAAATGCCC 66805 .......... .......... .......... .......... .......... .......... 258 TTGTTGTGGC GGCATTATTA TACTTTCTCC GTTGTCTTTT TCCTTTCTTT CCAAGGAGTG 66865 .......... .......... .......... .......... .......... .......... 258 AATTTTATTC TGATGTACTA TCATCATCAT AAGAATGCTT ACAAGTAGGG GCGCGGATTA 66925 .......... .......... .......... .......... .......... .......... 258 CAGTATGGGC AATGATGAAA TCCATTCCCT ATATAACTAA TGATCCACTA AATGTAATGC 66985 .......... .......... .......... .......... .......... .......... 258 ATGAGATCGT CCTAACATCA GAACAAGAAT CTGGTCATTT CAAAAACCTT AAAGATAATT 67045 .......... .......... .......... .......... .......... .......... 258 TAGAATCTAA AGGCTAGACA ACATAGATGT CTTAATGTGA TTAATTTATG TAGAGGACAT 67105 .......... .......... .......... .......... .......... .......... 258 GCATGTCAAT TGGTATACTT TAGAAGTGGC TCTGGGATTA ATAATATCAT TAATACACTC 67165 .......... .......... .......... .......... .......... .......... 258 AGCTTTCACT TTAGTGTACC CAAGTCACAA ATGTTTTTAT AATGAAGTTA GTAACTTTAC 67225 .......... .......... .......... .......... .......... .......... 258 CTAAATATCA TAGAATCACT GAACTATATT TTTAATAAAA GTCTGTTACT GAGGAGAGAA 67285 .......... .......... .......... .......... .......... .......... 258 GCTAAAATTT GCCTGAATAT CATGGAGTCG CTTAGAGGGA AACAAATAAG ACATTCTGTA 67345 .......... .......... .......... .......... .......... .......... 258 TGATATTTGA GTAAAGTGAA TGATTCTTTT TATTACAAAA CATTGTTTAG TGACTTCTAG 67405 .......... .......... .......... .......... .......... .......... 258 TGATATTTAG CCAAAGTTGA GTGACTATTG ACTTGTAAAG TACCACTTTG TTCCTCTTGT 67465 .......... .......... .......... .......... .......... .......... 258 AGTGTTTTAT TCAAGAATTG ATTGGATTTG TTTTTATGGT ACATGACAAA TTTGTATTCC 67525 .......... .......... .......... .......... .......... .......... 258 AATAAATCAA AAACTAGATT GATTAGGAAT TGAGTGGCAA GTGCAATTTA CTCTTTAAGT 67585 .......... .......... .......... .......... .......... .......... 258 ATACCATTTA TTTGACCTGT AGTACGTGGT ACTGCATATA TTTTTACCTG GATCTTTGAA 67645 .......... .......... .......... .......... .......... .......... 258 TTTCTCAGAT GTACGGGTGG AACTTGTTAA GTCTCGTCCC ATGACGTGAC TTCTCTTGGT 67705 .......... .......... .......... .......... .......... .......... 258 GACACATTTT CCTGGGTTTA TTTTATTAGT CTGGTTGGTA TAGGTCTTTA CACGACTTAT 67765 .......... .......... .......... .......... .......... .......... 258 TAGTACATCT ATTTGGGCCT TCCCTTTGTT GCTGTATTCT CTGTCGTCTC TTTTGCTTCT 67825 .......... .......... .......... .......... .......... .......... 258 TTTATGTGGT GGGATTTATA TATTCTACTC TTGGTAAGTA AATGGATGTG CAGTTTTGGT 67885 .......... .......... .......... .......... .......... .......... 258 ATATGCAGGC TACTGAATGA ATAGTATAGA ATGTTATCTG AGGGGGCCTT TAGAAGTTTG 67945 .......... .......... .......... .......... .......... .......... 258 TTCTTTATGT TTGCAGCCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA 68005 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA 302 GAGTAATTGT TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGTGGCG AAGAGTCCAC 68065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAATTGT TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGTGGCG AAGAGTCCAC 362 TTTTACCAAT CAAGCGTCGT CCTCTTCTCT CTATCTCTCT TTGTTTTTGG TGTTATGTAG 68125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTACCAAT CAAGCGTCGT CCTCTTCTCT CTATCTCTCT TTGTTTTTGG TGTTATGTAG 422 CTTTAGTTTC TTTGAACATT TTGTGATTAT ATGCAGTTAT GTCTAGACTT GCACCTTCTG 68185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAGTTTC TTTGAACATT TTGTGATTAT ATGCAGTTAT GTCTAGACTT GCACCTTCTG 482 TTCTTCTATA TATGCGACTT CCAATTC 68212 |||||||||| |||||||||| ||||||| TTCTTCTATA TATGCGACTT CCAATTC 509 hqPGS_C08HBa0320P23.1+_SGN-E278920- (66146 66307,66393 66488,67962 68212) ******************************************************************************** EST sequence 49 +strand 531 n (File: SGN-E238579+) 1 GGATGCCTAC CTCTATGTTA TACGGAGCTA TTTCAGCTAA AGTGTCTCCC ATAGATCTGA 61 AATTGGTTCA TGCACATTAT GACTTGATCA GGAGCAAACA TATTTTCCGG AATGATTTCA 121 TTAGAATGCT GAGGTTGATA GTGGGTGATC TGGTATTGAA GTCTACCATA ACCAATCTCC 181 AGTGTAAGCC GCCTTCCGCA TCTCCATGCT TTCTGAATGT GCCGAGTGGG GAGAGTCATT 241 GGTGAGGCTG TACCAGCAAG GGTGGATCGC TGCGTGGTAG GCGAAGAGTC CACTTTTACC 301 AATCAAGCGT AGACCTCTTC TCTCTATCTC TCTTTGTCTA TGGTGTTATG TAGCTTTAGT 361 TTCTTTGAAC ATTTTGTGAT TATATGCAGT TATGTCTAGA CTTGCACCTT CTGTTCTTCT 421 ATATATGCGA CTTCCAATTC TCTCCCGTCT GTGATGGCAA TAATTGGTGC ACAGCATGAG 481 TTACTGGAGC TTAAATTGGC TTTAGGCTGG CATCTTGAAA GTGCTGCTAG T Predicted gene structure (within gDNA segment 65418 to 68913): Exon 1 66216 66307 ( 92 n); cDNA 1 92 ( 92 n); score: 0.924 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 0.92), Pa: 0.943 (s: 0.92) Exon 2 66393 66488 ( 96 n); cDNA 93 188 ( 96 n); score: 0.938 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 0.96), Pa: 0.994 (s: 0.98) Exon 3 67962 68303 ( 342 n); cDNA 189 531 ( 343 n); score: 0.966 MATCH C08HBa0320P23.1+ SGN-E238579+ 0.954 530 0.998 C PGS_C08HBa0320P23.1+_SGN-E238579+ (66216 66307,66393 66488,67962 68303) Alignment (genomic DNA sequence = upper lines): GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 66275 |||||||| |||||||||| | |||||||| |||||||||| ||||||||| | |||| ||| GGATGCCTAC CTCTATGTTA TACGGAGCTA TTTCAGCTAA AGTGTCTCCC ATAGATCTGA 60 AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG TGTTGACAGG TCTAATAATT 66335 |||||||||| |||||||||| |||||| ||| || AATTGGTTCA TGCACATTAT GACTTGATCA GG........ .......... .......... 92 TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT GTTTTTTTTT TCCTTAGAGC 66395 ||| .......... .......... .......... .......... .......... .......AGC 95 AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA 66455 ||| | |||| ||||||||| |||||||||| | |||||||| |||||||||| ||||| | || AAACATATTT TCCGGAATGA TTTCATTAGA ATGCTGAGGT TGATAGTGGG TGATCTGGTA 155 TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAGGTACTGT GCTCCGATCC ATATATGATT 66515 |||||||||| |||||||||| |||||||||| ||| TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAG....... .......... .......... 188 TGGTAGTTTT GTACTTCCGA TGGGGTGTTT GTTGACAACT GCACTTGTCT CGAATTGATA 66575 .......... .......... .......... .......... .......... .......... 188 TATTAATTTT GGTTTAAGCG AAGTAGGAAA AAAAGTTGGT TTACTCTTTA GTTTGGGTGG 66635 .......... .......... .......... .......... .......... .......... 188 CAAGTTTTTC TCAATAAGTT TAGGTGGCAT ATGTATCCTT TTATTTTATA TTTCCTTTTT 66695 .......... .......... .......... .......... .......... .......... 188 GGTCCAAGAA TCTCTCCTCT AGTTTAAAGT GTATTGAGAC CTTACTGTTG TCACTATATA 66755 .......... .......... .......... .......... .......... .......... 188 GTCAATCTGG TTGTTTCTGT TGGTGGTGGT TGCTCGATTC TTAAATGCCC TTGTTGTGGC 66815 .......... .......... .......... .......... .......... .......... 188 GGCATTATTA TACTTTCTCC GTTGTCTTTT TCCTTTCTTT CCAAGGAGTG AATTTTATTC 66875 .......... .......... .......... .......... .......... .......... 188 TGATGTACTA TCATCATCAT AAGAATGCTT ACAAGTAGGG GCGCGGATTA CAGTATGGGC 66935 .......... .......... .......... .......... .......... .......... 188 AATGATGAAA TCCATTCCCT ATATAACTAA TGATCCACTA AATGTAATGC ATGAGATCGT 66995 .......... .......... .......... .......... .......... .......... 188 CCTAACATCA GAACAAGAAT CTGGTCATTT CAAAAACCTT AAAGATAATT TAGAATCTAA 67055 .......... .......... .......... .......... .......... .......... 188 AGGCTAGACA ACATAGATGT CTTAATGTGA TTAATTTATG TAGAGGACAT GCATGTCAAT 67115 .......... .......... .......... .......... .......... .......... 188 TGGTATACTT TAGAAGTGGC TCTGGGATTA ATAATATCAT TAATACACTC AGCTTTCACT 67175 .......... .......... .......... .......... .......... .......... 188 TTAGTGTACC CAAGTCACAA ATGTTTTTAT AATGAAGTTA GTAACTTTAC CTAAATATCA 67235 .......... .......... .......... .......... .......... .......... 188 TAGAATCACT GAACTATATT TTTAATAAAA GTCTGTTACT GAGGAGAGAA GCTAAAATTT 67295 .......... .......... .......... .......... .......... .......... 188 GCCTGAATAT CATGGAGTCG CTTAGAGGGA AACAAATAAG ACATTCTGTA TGATATTTGA 67355 .......... .......... .......... .......... .......... .......... 188 GTAAAGTGAA TGATTCTTTT TATTACAAAA CATTGTTTAG TGACTTCTAG TGATATTTAG 67415 .......... .......... .......... .......... .......... .......... 188 CCAAAGTTGA GTGACTATTG ACTTGTAAAG TACCACTTTG TTCCTCTTGT AGTGTTTTAT 67475 .......... .......... .......... .......... .......... .......... 188 TCAAGAATTG ATTGGATTTG TTTTTATGGT ACATGACAAA TTTGTATTCC AATAAATCAA 67535 .......... .......... .......... .......... .......... .......... 188 AAACTAGATT GATTAGGAAT TGAGTGGCAA GTGCAATTTA CTCTTTAAGT ATACCATTTA 67595 .......... .......... .......... .......... .......... .......... 188 TTTGACCTGT AGTACGTGGT ACTGCATATA TTTTTACCTG GATCTTTGAA TTTCTCAGAT 67655 .......... .......... .......... .......... .......... .......... 188 GTACGGGTGG AACTTGTTAA GTCTCGTCCC ATGACGTGAC TTCTCTTGGT GACACATTTT 67715 .......... .......... .......... .......... .......... .......... 188 CCTGGGTTTA TTTTATTAGT CTGGTTGGTA TAGGTCTTTA CACGACTTAT TAGTACATCT 67775 .......... .......... .......... .......... .......... .......... 188 ATTTGGGCCT TCCCTTTGTT GCTGTATTCT CTGTCGTCTC TTTTGCTTCT TTTATGTGGT 67835 .......... .......... .......... .......... .......... .......... 188 GGGATTTATA TATTCTACTC TTGGTAAGTA AATGGATGTG CAGTTTTGGT ATATGCAGGC 67895 .......... .......... .......... .......... .......... .......... 188 TACTGAATGA ATAGTATAGA ATGTTATCTG AGGGGGCCTT TAGAAGTTTG TTCTTTATGT 67955 .......... .......... .......... .......... .......... .......... 188 TTGCAGCCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTAATTGT 68015 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| ......CCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTCATTGG 242 TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGT-GGC GAAGAGTCCA CTTTTACCAA 68074 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGTAGGC GAAGAGTCCA CTTTTACCAA 302 TCAAGCGTCG TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT 68134 |||||||| | ||||||||| |||||||||| ||||| | || |||||||||| |||||||||| TCAAGCGTAG ACCTCTTCTC TCTATCTCTC TTTGTCTATG GTGTTATGTA GCTTTAGTTT 362 CTTTGAACAT TTTGTGATTA TATGCAGTTA TGTCTAGACT TGCACCTTCT GTTCTTCTAT 68194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAACAT TTTGTGATTA TATGCAGTTA TGTCTAGACT TGCACCTTCT GTTCTTCTAT 422 ATATGCGACT TCCAATTCTC TCCCGTCTGT GATGGCAATA ATTGGTGCAC AGCAGGAGTT 68254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATATGCGACT TCCAATTCTC TCCCGTCTGT GATGGCAATA ATTGGTGCAC AGCATGAGTT 482 ACTGGAGCTT AAATTGGTTT TAGGTTGGCA TCTTGAAAGT GCTGCTAGT 68303 |||||||||| ||||||| || |||| ||||| |||||||||| ||||||||| ACTGGAGCTT AAATTGGCTT TAGGCTGGCA TCTTGAAAGT GCTGCTAGT 531 hqPGS_C08HBa0320P23.1+_SGN-E238579+ (66216 66307,66393 66488,67962 68303) ******************************************************************************** EST sequence 31 +strand 472 n (File: SGN-E233463+) 1 GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 61 AATTGGTTCA TGCACATTAT GACTTGTTCA GGAGCAAAAA AATTTCCCGG AATGATTTCA 121 TTAGAAGGCT GAGGTTGATA GTGGGTGATC AGTTATTGAA GTCTACCATA ACCAATCTCC 181 AGTGTAAGCC GCCTTCCGCA TCTCCATGCT TTCTGAATGT GCCGAGTGGG GAGAGTAATT 241 GTTGAGGCTG TACCAGCAAG GGTGGATCGC TGCGTGGTGG CGAAGAGTCC ACTTTTACCA 301 ATCAAGCGTC GTCCTCTTCT CTCTATCTCT CTATGTTTTT GGTGTTATGT AGCTATAGTT 361 TCTTTGAACA TTTTGTGATT ATATGCAGTT ATGTCTAGAC TTGCACCTTC TGTTCTTCTA 421 TATATGCGAC TTCCAATTCT CTCCCGTCTG TGATGGCAAT AATTGGTGCA CA Predicted gene structure (within gDNA segment 65616 to 68855): Exon 1 66216 66307 ( 92 n); cDNA 1 92 ( 92 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 93 188 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68245 ( 284 n); cDNA 189 472 ( 284 n); score: 0.993 MATCH C08HBa0320P23.1+ SGN-E233463+ 0.996 472 1.000 C PGS_C08HBa0320P23.1+_SGN-E233463+ (66216 66307,66393 66488,67962 68245) Alignment (genomic DNA sequence = upper lines): GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 66275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 60 AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG TGTTGACAGG TCTAATAATT 66335 |||||||||| |||||||||| |||||||||| || AATTGGTTCA TGCACATTAT GACTTGTTCA GG........ .......... .......... 92 TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT GTTTTTTTTT TCCTTAGAGC 66395 ||| .......... .......... .......... .......... .......... .......AGC 95 AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA 66455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA 155 TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAGGTACTGT GCTCCGATCC ATATATGATT 66515 |||||||||| |||||||||| |||||||||| ||| TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAG....... .......... .......... 188 TGGTAGTTTT GTACTTCCGA TGGGGTGTTT GTTGACAACT GCACTTGTCT CGAATTGATA 66575 .......... .......... .......... .......... .......... .......... 188 TATTAATTTT GGTTTAAGCG AAGTAGGAAA AAAAGTTGGT TTACTCTTTA GTTTGGGTGG 66635 .......... .......... .......... .......... .......... .......... 188 CAAGTTTTTC TCAATAAGTT TAGGTGGCAT ATGTATCCTT TTATTTTATA TTTCCTTTTT 66695 .......... .......... .......... .......... .......... .......... 188 GGTCCAAGAA TCTCTCCTCT AGTTTAAAGT GTATTGAGAC CTTACTGTTG TCACTATATA 66755 .......... .......... .......... .......... .......... .......... 188 GTCAATCTGG TTGTTTCTGT TGGTGGTGGT TGCTCGATTC TTAAATGCCC TTGTTGTGGC 66815 .......... .......... .......... .......... .......... .......... 188 GGCATTATTA TACTTTCTCC GTTGTCTTTT TCCTTTCTTT CCAAGGAGTG AATTTTATTC 66875 .......... .......... .......... .......... .......... .......... 188 TGATGTACTA TCATCATCAT AAGAATGCTT ACAAGTAGGG GCGCGGATTA CAGTATGGGC 66935 .......... .......... .......... .......... .......... .......... 188 AATGATGAAA TCCATTCCCT ATATAACTAA TGATCCACTA AATGTAATGC ATGAGATCGT 66995 .......... .......... .......... .......... .......... .......... 188 CCTAACATCA GAACAAGAAT CTGGTCATTT CAAAAACCTT AAAGATAATT TAGAATCTAA 67055 .......... .......... .......... .......... .......... .......... 188 AGGCTAGACA ACATAGATGT CTTAATGTGA TTAATTTATG TAGAGGACAT GCATGTCAAT 67115 .......... .......... .......... .......... .......... .......... 188 TGGTATACTT TAGAAGTGGC TCTGGGATTA ATAATATCAT TAATACACTC AGCTTTCACT 67175 .......... .......... .......... .......... .......... .......... 188 TTAGTGTACC CAAGTCACAA ATGTTTTTAT AATGAAGTTA GTAACTTTAC CTAAATATCA 67235 .......... .......... .......... .......... .......... .......... 188 TAGAATCACT GAACTATATT TTTAATAAAA GTCTGTTACT GAGGAGAGAA GCTAAAATTT 67295 .......... .......... .......... .......... .......... .......... 188 GCCTGAATAT CATGGAGTCG CTTAGAGGGA AACAAATAAG ACATTCTGTA TGATATTTGA 67355 .......... .......... .......... .......... .......... .......... 188 GTAAAGTGAA TGATTCTTTT TATTACAAAA CATTGTTTAG TGACTTCTAG TGATATTTAG 67415 .......... .......... .......... .......... .......... .......... 188 CCAAAGTTGA GTGACTATTG ACTTGTAAAG TACCACTTTG TTCCTCTTGT AGTGTTTTAT 67475 .......... .......... .......... .......... .......... .......... 188 TCAAGAATTG ATTGGATTTG TTTTTATGGT ACATGACAAA TTTGTATTCC AATAAATCAA 67535 .......... .......... .......... .......... .......... .......... 188 AAACTAGATT GATTAGGAAT TGAGTGGCAA GTGCAATTTA CTCTTTAAGT ATACCATTTA 67595 .......... .......... .......... .......... .......... .......... 188 TTTGACCTGT AGTACGTGGT ACTGCATATA TTTTTACCTG GATCTTTGAA TTTCTCAGAT 67655 .......... .......... .......... .......... .......... .......... 188 GTACGGGTGG AACTTGTTAA GTCTCGTCCC ATGACGTGAC TTCTCTTGGT GACACATTTT 67715 .......... .......... .......... .......... .......... .......... 188 CCTGGGTTTA TTTTATTAGT CTGGTTGGTA TAGGTCTTTA CACGACTTAT TAGTACATCT 67775 .......... .......... .......... .......... .......... .......... 188 ATTTGGGCCT TCCCTTTGTT GCTGTATTCT CTGTCGTCTC TTTTGCTTCT TTTATGTGGT 67835 .......... .......... .......... .......... .......... .......... 188 GGGATTTATA TATTCTACTC TTGGTAAGTA AATGGATGTG CAGTTTTGGT ATATGCAGGC 67895 .......... .......... .......... .......... .......... .......... 188 TACTGAATGA ATAGTATAGA ATGTTATCTG AGGGGGCCTT TAGAAGTTTG TTCTTTATGT 67955 .......... .......... .......... .......... .......... .......... 188 TTGCAGCCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTAATTGT 68015 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......CCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTAATTGT 242 TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGTGGCG AAGAGTCCAC TTTTACCAAT 68075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCTGTA CCAGCAAGGG TGGATCGCTG CGTGGTGGCG AAGAGTCCAC TTTTACCAAT 302 CAAGCGTCGT CCTCTTCTCT CTATCTCTCT TTGTTTTTGG TGTTATGTAG CTTTAGTTTC 68135 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| || ||||||| CAAGCGTCGT CCTCTTCTCT CTATCTCTCT ATGTTTTTGG TGTTATGTAG CTATAGTTTC 362 TTTGAACATT TTGTGATTAT ATGCAGTTAT GTCTAGACTT GCACCTTCTG TTCTTCTATA 68195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACATT TTGTGATTAT ATGCAGTTAT GTCTAGACTT GCACCTTCTG TTCTTCTATA 422 TATGCGACTT CCAATTCTCT CCCGTCTGTG ATGGCAATAA TTGGTGCACA 68245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCGACTT CCAATTCTCT CCCGTCTGTG ATGGCAATAA TTGGTGCACA 472 hqPGS_C08HBa0320P23.1+_SGN-E233463+ (66216 66307,66393 66488,67962 68245) ******************************************************************************** EST sequence 48 +strand 239 n (File: SGN-E238329+) 1 GGATGCCTCT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 61 AATTGGTTCA TGCACATTAT GACTTGTTCA GGAGCAAAAA AATTTCCCGG AATGATTTCA 121 TTAGAAGGCT GAGGTTGATA GTGGGTGATC AGTTATCGAA GTCTACCATA ACCAATCTCC 181 AGTGTAAGCC GGCTTCCGCA TCTGCATGCT TTCTGAATGT GCCGAGTGGG GAGAGTAAT Predicted gene structure (within gDNA segment 65535 to 68622): Exon 1 66216 66307 ( 92 n); cDNA 1 92 ( 92 n); score: 0.989 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 93 188 ( 96 n); score: 0.990 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 0.98), Pa: 0.994 (s: 0.96) Exon 3 67962 68012 ( 51 n); cDNA 189 239 ( 51 n); score: 0.961 MATCH C08HBa0320P23.1+ SGN-E238329+ 0.983 239 1.000 C PGS_C08HBa0320P23.1+_SGN-E238329+ (66216 66307,66393 66488,67962 68012) Alignment (genomic DNA sequence = upper lines): GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 66275 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCCTCT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA AGTGTCTCCA AAAGATTTGA 60 AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG TGTTGACAGG TCTAATAATT 66335 |||||||||| |||||||||| |||||||||| || AATTGGTTCA TGCACATTAT GACTTGTTCA GG........ .......... .......... 92 TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT GTTTTTTTTT TCCTTAGAGC 66395 ||| .......... .......... .......... .......... .......... .......AGC 95 AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA 66455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA 155 TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAGGTACTGT GCTCCGATCC ATATATGATT 66515 | |||||||| |||||||||| |||||||||| ||| TCGAAGTCTA CCATAACCAA TCTCCAGTGT AAG....... .......... .......... 188 TGGTAGTTTT GTACTTCCGA TGGGGTGTTT GTTGACAACT GCACTTGTCT CGAATTGATA 66575 .......... .......... .......... .......... .......... .......... 188 TATTAATTTT GGTTTAAGCG AAGTAGGAAA AAAAGTTGGT TTACTCTTTA GTTTGGGTGG 66635 .......... .......... .......... .......... .......... .......... 188 CAAGTTTTTC TCAATAAGTT TAGGTGGCAT ATGTATCCTT TTATTTTATA TTTCCTTTTT 66695 .......... .......... .......... .......... .......... .......... 188 GGTCCAAGAA TCTCTCCTCT AGTTTAAAGT GTATTGAGAC CTTACTGTTG TCACTATATA 66755 .......... .......... .......... .......... .......... .......... 188 GTCAATCTGG TTGTTTCTGT TGGTGGTGGT TGCTCGATTC TTAAATGCCC TTGTTGTGGC 66815 .......... .......... .......... .......... .......... .......... 188 GGCATTATTA TACTTTCTCC GTTGTCTTTT TCCTTTCTTT CCAAGGAGTG AATTTTATTC 66875 .......... .......... .......... .......... .......... .......... 188 TGATGTACTA TCATCATCAT AAGAATGCTT ACAAGTAGGG GCGCGGATTA CAGTATGGGC 66935 .......... .......... .......... .......... .......... .......... 188 AATGATGAAA TCCATTCCCT ATATAACTAA TGATCCACTA AATGTAATGC ATGAGATCGT 66995 .......... .......... .......... .......... .......... .......... 188 CCTAACATCA GAACAAGAAT CTGGTCATTT CAAAAACCTT AAAGATAATT TAGAATCTAA 67055 .......... .......... .......... .......... .......... .......... 188 AGGCTAGACA ACATAGATGT CTTAATGTGA TTAATTTATG TAGAGGACAT GCATGTCAAT 67115 .......... .......... .......... .......... .......... .......... 188 TGGTATACTT TAGAAGTGGC TCTGGGATTA ATAATATCAT TAATACACTC AGCTTTCACT 67175 .......... .......... .......... .......... .......... .......... 188 TTAGTGTACC CAAGTCACAA ATGTTTTTAT AATGAAGTTA GTAACTTTAC CTAAATATCA 67235 .......... .......... .......... .......... .......... .......... 188 TAGAATCACT GAACTATATT TTTAATAAAA GTCTGTTACT GAGGAGAGAA GCTAAAATTT 67295 .......... .......... .......... .......... .......... .......... 188 GCCTGAATAT CATGGAGTCG CTTAGAGGGA AACAAATAAG ACATTCTGTA TGATATTTGA 67355 .......... .......... .......... .......... .......... .......... 188 GTAAAGTGAA TGATTCTTTT TATTACAAAA CATTGTTTAG TGACTTCTAG TGATATTTAG 67415 .......... .......... .......... .......... .......... .......... 188 CCAAAGTTGA GTGACTATTG ACTTGTAAAG TACCACTTTG TTCCTCTTGT AGTGTTTTAT 67475 .......... .......... .......... .......... .......... .......... 188 TCAAGAATTG ATTGGATTTG TTTTTATGGT ACATGACAAA TTTGTATTCC AATAAATCAA 67535 .......... .......... .......... .......... .......... .......... 188 AAACTAGATT GATTAGGAAT TGAGTGGCAA GTGCAATTTA CTCTTTAAGT ATACCATTTA 67595 .......... .......... .......... .......... .......... .......... 188 TTTGACCTGT AGTACGTGGT ACTGCATATA TTTTTACCTG GATCTTTGAA TTTCTCAGAT 67655 .......... .......... .......... .......... .......... .......... 188 GTACGGGTGG AACTTGTTAA GTCTCGTCCC ATGACGTGAC TTCTCTTGGT GACACATTTT 67715 .......... .......... .......... .......... .......... .......... 188 CCTGGGTTTA TTTTATTAGT CTGGTTGGTA TAGGTCTTTA CACGACTTAT TAGTACATCT 67775 .......... .......... .......... .......... .......... .......... 188 ATTTGGGCCT TCCCTTTGTT GCTGTATTCT CTGTCGTCTC TTTTGCTTCT TTTATGTGGT 67835 .......... .......... .......... .......... .......... .......... 188 GGGATTTATA TATTCTACTC TTGGTAAGTA AATGGATGTG CAGTTTTGGT ATATGCAGGC 67895 .......... .......... .......... .......... .......... .......... 188 TACTGAATGA ATAGTATAGA ATGTTATCTG AGGGGGCCTT TAGAAGTTTG TTCTTTATGT 67955 .......... .......... .......... .......... .......... .......... 188 TTGCAGCCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTAAT 68012 ||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||| ......CCGG CTTCCGCATC TGCATGCTTT CTGAATGTGC CGAGTGGGGA GAGTAAT 239 hqPGS_C08HBa0320P23.1+_SGN-E238329+ (66216 66307,66393 66488,67962 68012) ******************************************************************************** EST sequence 59 +strand 230 n (File: SGN-E240277+) 1 GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA 61 ATTGGTTCAT GCACATTATG ACTTGTTCAG GAGCAAAAAA ATTTCCCGGA ATGATTTCAT 121 TAGAAGGCTG AGGTTGATAG TGGGTGATCA GTTATTGAAG TCTACCATAA CCAATCTCCA 181 GTGTAAGCCG CCTTCCGCAT CTCCATGCTT TCTGAATGTG CCGAGTGGGG Predicted gene structure (within gDNA segment 65617 to 68614): Exon 1 66217 66307 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 92 187 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68004 ( 43 n); cDNA 188 230 ( 43 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-E240277+ 1.000 230 1.000 C PGS_C08HBa0320P23.1+_SGN-E240277+ (66217 66307,66393 66488,67962 68004) Alignment (genomic DNA sequence = upper lines): GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA 66276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA GTGTCTCCAA AAGATTTGAA 60 ATTGGTTCAT GCACATTATG ACTTGTTCAG GGTATGTTGT GTTGACAGGT CTAATAATTT 66336 |||||||||| |||||||||| |||||||||| | ATTGGTTCAT GCACATTATG ACTTGTTCAG G......... .......... .......... 91 TCTTTTTTAA CTTTCTTCTT ACGCCCTGAA CCTATCTCTG TTTTTTTTTT CCTTAGAGCA 66396 |||| .......... .......... .......... .......... .......... ......AGCA 95 AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT GATAGTGGGT GATCAGTTAT 66456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT GATAGTGGGT GATCAGTTAT 155 TGAAGTCTAC CATAACCAAT CTCCAGTGTA AGGTACTGTG CTCCGATCCA TATATGATTT 66516 |||||||||| |||||||||| |||||||||| || TGAAGTCTAC CATAACCAAT CTCCAGTGTA AG........ .......... .......... 187 GGTAGTTTTG TACTTCCGAT GGGGTGTTTG TTGACAACTG CACTTGTCTC GAATTGATAT 66576 .......... .......... .......... .......... .......... .......... 187 ATTAATTTTG GTTTAAGCGA AGTAGGAAAA AAAGTTGGTT TACTCTTTAG TTTGGGTGGC 66636 .......... .......... .......... .......... .......... .......... 187 AAGTTTTTCT CAATAAGTTT AGGTGGCATA TGTATCCTTT TATTTTATAT TTCCTTTTTG 66696 .......... .......... .......... .......... .......... .......... 187 GTCCAAGAAT CTCTCCTCTA GTTTAAAGTG TATTGAGACC TTACTGTTGT CACTATATAG 66756 .......... .......... .......... .......... .......... .......... 187 TCAATCTGGT TGTTTCTGTT GGTGGTGGTT GCTCGATTCT TAAATGCCCT TGTTGTGGCG 66816 .......... .......... .......... .......... .......... .......... 187 GCATTATTAT ACTTTCTCCG TTGTCTTTTT CCTTTCTTTC CAAGGAGTGA ATTTTATTCT 66876 .......... .......... .......... .......... .......... .......... 187 GATGTACTAT CATCATCATA AGAATGCTTA CAAGTAGGGG CGCGGATTAC AGTATGGGCA 66936 .......... .......... .......... .......... .......... .......... 187 ATGATGAAAT CCATTCCCTA TATAACTAAT GATCCACTAA ATGTAATGCA TGAGATCGTC 66996 .......... .......... .......... .......... .......... .......... 187 CTAACATCAG AACAAGAATC TGGTCATTTC AAAAACCTTA AAGATAATTT AGAATCTAAA 67056 .......... .......... .......... .......... .......... .......... 187 GGCTAGACAA CATAGATGTC TTAATGTGAT TAATTTATGT AGAGGACATG CATGTCAATT 67116 .......... .......... .......... .......... .......... .......... 187 GGTATACTTT AGAAGTGGCT CTGGGATTAA TAATATCATT AATACACTCA GCTTTCACTT 67176 .......... .......... .......... .......... .......... .......... 187 TAGTGTACCC AAGTCACAAA TGTTTTTATA ATGAAGTTAG TAACTTTACC TAAATATCAT 67236 .......... .......... .......... .......... .......... .......... 187 AGAATCACTG AACTATATTT TTAATAAAAG TCTGTTACTG AGGAGAGAAG CTAAAATTTG 67296 .......... .......... .......... .......... .......... .......... 187 CCTGAATATC ATGGAGTCGC TTAGAGGGAA ACAAATAAGA CATTCTGTAT GATATTTGAG 67356 .......... .......... .......... .......... .......... .......... 187 TAAAGTGAAT GATTCTTTTT ATTACAAAAC ATTGTTTAGT GACTTCTAGT GATATTTAGC 67416 .......... .......... .......... .......... .......... .......... 187 CAAAGTTGAG TGACTATTGA CTTGTAAAGT ACCACTTTGT TCCTCTTGTA GTGTTTTATT 67476 .......... .......... .......... .......... .......... .......... 187 CAAGAATTGA TTGGATTTGT TTTTATGGTA CATGACAAAT TTGTATTCCA ATAAATCAAA 67536 .......... .......... .......... .......... .......... .......... 187 AACTAGATTG ATTAGGAATT GAGTGGCAAG TGCAATTTAC TCTTTAAGTA TACCATTTAT 67596 .......... .......... .......... .......... .......... .......... 187 TTGACCTGTA GTACGTGGTA CTGCATATAT TTTTACCTGG ATCTTTGAAT TTCTCAGATG 67656 .......... .......... .......... .......... .......... .......... 187 TACGGGTGGA ACTTGTTAAG TCTCGTCCCA TGACGTGACT TCTCTTGGTG ACACATTTTC 67716 .......... .......... .......... .......... .......... .......... 187 CTGGGTTTAT TTTATTAGTC TGGTTGGTAT AGGTCTTTAC ACGACTTATT AGTACATCTA 67776 .......... .......... .......... .......... .......... .......... 187 TTTGGGCCTT CCCTTTGTTG CTGTATTCTC TGTCGTCTCT TTTGCTTCTT TTATGTGGTG 67836 .......... .......... .......... .......... .......... .......... 187 GGATTTATAT ATTCTACTCT TGGTAAGTAA ATGGATGTGC AGTTTTGGTA TATGCAGGCT 67896 .......... .......... .......... .......... .......... .......... 187 ACTGAATGAA TAGTATAGAA TGTTATCTGA GGGGGCCTTT AGAAGTTTGT TCTTTATGTT 67956 .......... .......... .......... .......... .......... .......... 187 TGCAGCCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC GAGTGGGG 68004 ||||| |||||||||| |||||||||| |||||||||| |||||||| .....CCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC GAGTGGGG 230 hqPGS_C08HBa0320P23.1+_SGN-E240277+ (66217 66307,66393 66488,67962 68004) ******************************************************************************** EST sequence 36 +strand 469 n (File: SGN-E352226+) 1 TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 61 AGCAAAAAAA TTTCCCGGAA TGATTTCATT AGAAGGCTGA GGTTGATAGT GGGTGATCAG 121 TTATTGAAGT CTACCATAAC CAATCTCCAG TGTAAGCCGC CTTCCGCATC TCCATGCTTT 181 CTGAATGTGC CGAGTGGGGA GAGTAATTGT TGAGGCTGTA CCAGCAAGGG TGGATCGCTG 241 CGTGGTGGCG AAGAGTCCAC TTTTACCAAT CAAGCGTCGN CCTCTTCTCT CTATCTCTCT 301 TTGGTTTTGG GGGTATGTAG CTTTAGTTTC TTTGAACATT TTGTGATTAT ATGCAGTTAT 361 GTCTAGACTT GCACCCTTCT GGTCTTCTAT ATATGCGACT TCCAATTCTC TCCCGTCTGT 421 GATTGCAATA ATTGGTGCAC AGCAGGAGTT ACTGGAGCTT TAAATGGGT Predicted gene structure (within gDNA segment 65648 to 68964): Exon 1 66248 66307 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 61 156 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68271 ( 310 n); cDNA 157 467 ( 311 n); score: 0.966 MATCH C08HBa0320P23.1+ SGN-E352226+ 0.977 466 0.994 C PGS_C08HBa0320P23.1+_SGN-E352226+ (66248 66307,66393 66488,67962 68271) Alignment (genomic DNA sequence = upper lines): TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 66307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTAAAG TGTCTCCAAA AGATTTGAAA TTGGTTCATG CACATTATGA CTTGTTCAGG 60 GTATGTTGTG TTGACAGGTC TAATAATTTT CTTTTTTAAC TTTCTTCTTA CGCCCTGAAC 66367 .......... .......... .......... .......... .......... .......... 60 CTATCTCTGT TTTTTTTTTC CTTAGAGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 66427 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AGCAA AAAAATTTCC CGGAATGATT TCATTAGAAG 95 GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 66487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGGTTG ATAGTGGGTG ATCAGTTATT GAAGTCTACC ATAACCAATC TCCAGTGTAA 155 GGTACTGTGC TCCGATCCAT ATATGATTTG GTAGTTTTGT ACTTCCGATG GGGTGTTTGT 66547 | G......... .......... .......... .......... .......... .......... 156 TGACAACTGC ACTTGTCTCG AATTGATATA TTAATTTTGG TTTAAGCGAA GTAGGAAAAA 66607 .......... .......... .......... .......... .......... .......... 156 AAGTTGGTTT ACTCTTTAGT TTGGGTGGCA AGTTTTTCTC AATAAGTTTA GGTGGCATAT 66667 .......... .......... .......... .......... .......... .......... 156 GTATCCTTTT ATTTTATATT TCCTTTTTGG TCCAAGAATC TCTCCTCTAG TTTAAAGTGT 66727 .......... .......... .......... .......... .......... .......... 156 ATTGAGACCT TACTGTTGTC ACTATATAGT CAATCTGGTT GTTTCTGTTG GTGGTGGTTG 66787 .......... .......... .......... .......... .......... .......... 156 CTCGATTCTT AAATGCCCTT GTTGTGGCGG CATTATTATA CTTTCTCCGT TGTCTTTTTC 66847 .......... .......... .......... .......... .......... .......... 156 CTTTCTTTCC AAGGAGTGAA TTTTATTCTG ATGTACTATC ATCATCATAA GAATGCTTAC 66907 .......... .......... .......... .......... .......... .......... 156 AAGTAGGGGC GCGGATTACA GTATGGGCAA TGATGAAATC CATTCCCTAT ATAACTAATG 66967 .......... .......... .......... .......... .......... .......... 156 ATCCACTAAA TGTAATGCAT GAGATCGTCC TAACATCAGA ACAAGAATCT GGTCATTTCA 67027 .......... .......... .......... .......... .......... .......... 156 AAAACCTTAA AGATAATTTA GAATCTAAAG GCTAGACAAC ATAGATGTCT TAATGTGATT 67087 .......... .......... .......... .......... .......... .......... 156 AATTTATGTA GAGGACATGC ATGTCAATTG GTATACTTTA GAAGTGGCTC TGGGATTAAT 67147 .......... .......... .......... .......... .......... .......... 156 AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT GTTTTTATAA 67207 .......... .......... .......... .......... .......... .......... 156 TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT TAATAAAAGT 67267 .......... .......... .......... .......... .......... .......... 156 CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT TAGAGGGAAA 67327 .......... .......... .......... .......... .......... .......... 156 CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA TTACAAAACA 67387 .......... .......... .......... .......... .......... .......... 156 TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC TTGTAAAGTA 67447 .......... .......... .......... .......... .......... .......... 156 CCACTTTGTT CCTCTTGTAG TGTTTTATTC AAGAATTGAT TGGATTTGTT TTTATGGTAC 67507 .......... .......... .......... .......... .......... .......... 156 ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAGGAATTG AGTGGCAAGT 67567 .......... .......... .......... .......... .......... .......... 156 GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGTAG TACGTGGTAC TGCATATATT 67627 .......... .......... .......... .......... .......... .......... 156 TTTACCTGGA TCTTTGAATT TCTCAGATGT ACGGGTGGAA CTTGTTAAGT CTCGTCCCAT 67687 .......... .......... .......... .......... .......... .......... 156 GACGTGACTT CTCTTGGTGA CACATTTTCC TGGGTTTATT TTATTAGTCT GGTTGGTATA 67747 .......... .......... .......... .......... .......... .......... 156 GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCTTC CCTTTGTTGC TGTATTCTCT 67807 .......... .......... .......... .......... .......... .......... 156 GTCGTCTCTT TTGCTTCTTT TATGTGGTGG GATTTATATA TTCTACTCTT GGTAAGTAAA 67867 .......... .......... .......... .......... .......... .......... 156 TGGATGTGCA GTTTTGGTAT ATGCAGGCTA CTGAATGAAT AGTATAGAAT GTTATCTGAG 67927 .......... .......... .......... .......... .......... .......... 156 GGGGCCTTTA GAAGTTTGTT CTTTATGTTT GCAGCCGCCT TCCGCATCTC CATGCTTTCT 67987 |||||| |||||||||| |||||||||| .......... .......... .......... ....CCGCCT TCCGCATCTC CATGCTTTCT 182 GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 68047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGCCG AGTGGGGAGA GTAATTGTTG AGGCTGTACC AGCAAGGGTG GATCGCTGCG 242 TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT 68107 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TGGTGGCGAA GAGTCCACTT TTACCAATCA AGCGTCGNCC TCTTCTCTCT ATCTCTCTTT 302 GTTTTTGGTG TTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 68167 | |||||| | ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTTGGGG GTATGTAGCT TTAGTTTCTT TGAACATTTT GTGATTATAT GCAGTTATGT 362 CTAGACTTGC A-CCTTCTGT TCTTCTATAT ATGCGACTTC CAATTCTCTC CCGTCTGTGA 68226 |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGACTTGC ACCCTTCTGG TCTTCTATAT ATGCGACTTC CAATTCTCTC CCGTCTGTGA 422 TGGCAATAAT TGGTGCACAG CAGGAGTTAC TGGAGCTTAA ATTGG 68271 | |||||||| |||||||||| |||||||||| |||||||| | | ||| TTGCAATAAT TGGTGCACAG CAGGAGTTAC TGGAGCTTTA AATGG 467 hqPGS_C08HBa0320P23.1+_SGN-E352226+ (66248 66307,66393 66488,67962 68271) ******************************************************************************** EST sequence 15 +strand 597 n (File: SGN-E302651+) 1 CGAGGAAAGA TTTGAAATTG GTTCATGCAC ATTATGACTT GTTCAGGAGC AAAAAAATTT 61 CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG TGATCAGTTA TTGAAGTCTA 121 CCATAACCAA TCTCCAGTGT AAGCCGCCTT CCGCATCTCC ATGCTTTCTG AATGTGCCGA 181 GTGGGGAGAG TAATTGTTGA GAGCTGTACC AGCAAGGGTG GATCGCTGCG TGGTGGCGAA 241 GAGTCCACTT TTACCAATCA AGCGTCGTCC TCTTCTCTCT ATCTCTCTTT GTTTTTGGTG 301 TTATGTACGC TTTAGTTTCT TTAGAACATT TTGTGATTAT ATGCAGTTAT GTCTAGACTT 361 GCACCTTCTG TTCTTCTATA TATGCGACTT CCAATTCTCT CCCGTCTGTG ATGGCAATAA 421 TTGGTGCACA GCAGGAGTTA CTGGAGCTTA AATTGGTTTT AGGTTGGCAT CTTGAAAGTG 481 CTGCTAGTCG GTTTAATCAT GGTTTGAAGA GAATAAAACT GTAGCAAACA TCGGTGGCGT 541 TGTATTTTAA CAAAAACTTA GGCATTGTAC TGTTATCACT TTGAAGCTGA GGGGTGA Predicted gene structure (within gDNA segment 65616 to 69022): Exon 1 66266 66307 ( 42 n); cDNA 6 47 ( 42 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 2 66393 66488 ( 96 n); cDNA 48 143 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 67962 68412 ( 451 n); cDNA 144 597 ( 454 n); score: 0.983 MATCH C08HBa0320P23.1+ SGN-E302651+ 0.986 589 0.987 C PGS_C08HBa0320P23.1+_SGN-E302651+ (66266 66307,66393 66488,67962 68412) Alignment (genomic DNA sequence = upper lines): AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG TGTTGACAGG 66325 |||||||||| |||||||||| |||||||||| |||||||||| || AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GG........ .......... 47 TCTAATAATT TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT GTTTTTTTTT 66385 .......... .......... .......... .......... .......... .......... 47 TCCTTAGAGC AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG 66445 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGC AAAAAAATTT CCCGGAATGA TTTCATTAGA AGGCTGAGGT TGATAGTGGG 100 TGATCAGTTA TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAGGTACTGT GCTCCGATCC 66505 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATCAGTTA TTGAAGTCTA CCATAACCAA TCTCCAGTGT AAG....... .......... 143 ATATATGATT TGGTAGTTTT GTACTTCCGA TGGGGTGTTT GTTGACAACT GCACTTGTCT 66565 .......... .......... .......... .......... .......... .......... 143 CGAATTGATA TATTAATTTT GGTTTAAGCG AAGTAGGAAA AAAAGTTGGT TTACTCTTTA 66625 .......... .......... .......... .......... .......... .......... 143 GTTTGGGTGG CAAGTTTTTC TCAATAAGTT TAGGTGGCAT ATGTATCCTT TTATTTTATA 66685 .......... .......... .......... .......... .......... .......... 143 TTTCCTTTTT GGTCCAAGAA TCTCTCCTCT AGTTTAAAGT GTATTGAGAC CTTACTGTTG 66745 .......... .......... .......... .......... .......... .......... 143 TCACTATATA GTCAATCTGG TTGTTTCTGT TGGTGGTGGT TGCTCGATTC TTAAATGCCC 66805 .......... .......... .......... .......... .......... .......... 143 TTGTTGTGGC GGCATTATTA TACTTTCTCC GTTGTCTTTT TCCTTTCTTT CCAAGGAGTG 66865 .......... .......... .......... .......... .......... .......... 143 AATTTTATTC TGATGTACTA TCATCATCAT AAGAATGCTT ACAAGTAGGG GCGCGGATTA 66925 .......... .......... .......... .......... .......... .......... 143 CAGTATGGGC AATGATGAAA TCCATTCCCT ATATAACTAA TGATCCACTA AATGTAATGC 66985 .......... .......... .......... .......... .......... .......... 143 ATGAGATCGT CCTAACATCA GAACAAGAAT CTGGTCATTT CAAAAACCTT AAAGATAATT 67045 .......... .......... .......... .......... .......... .......... 143 TAGAATCTAA AGGCTAGACA ACATAGATGT CTTAATGTGA TTAATTTATG TAGAGGACAT 67105 .......... .......... .......... .......... .......... .......... 143 GCATGTCAAT TGGTATACTT TAGAAGTGGC TCTGGGATTA ATAATATCAT TAATACACTC 67165 .......... .......... .......... .......... .......... .......... 143 AGCTTTCACT TTAGTGTACC CAAGTCACAA ATGTTTTTAT AATGAAGTTA GTAACTTTAC 67225 .......... .......... .......... .......... .......... .......... 143 CTAAATATCA TAGAATCACT GAACTATATT TTTAATAAAA GTCTGTTACT GAGGAGAGAA 67285 .......... .......... .......... .......... .......... .......... 143 GCTAAAATTT GCCTGAATAT CATGGAGTCG CTTAGAGGGA AACAAATAAG ACATTCTGTA 67345 .......... .......... .......... .......... .......... .......... 143 TGATATTTGA GTAAAGTGAA TGATTCTTTT TATTACAAAA CATTGTTTAG TGACTTCTAG 67405 .......... .......... .......... .......... .......... .......... 143 TGATATTTAG CCAAAGTTGA GTGACTATTG ACTTGTAAAG TACCACTTTG TTCCTCTTGT 67465 .......... .......... .......... .......... .......... .......... 143 AGTGTTTTAT TCAAGAATTG ATTGGATTTG TTTTTATGGT ACATGACAAA TTTGTATTCC 67525 .......... .......... .......... .......... .......... .......... 143 AATAAATCAA AAACTAGATT GATTAGGAAT TGAGTGGCAA GTGCAATTTA CTCTTTAAGT 67585 .......... .......... .......... .......... .......... .......... 143 ATACCATTTA TTTGACCTGT AGTACGTGGT ACTGCATATA TTTTTACCTG GATCTTTGAA 67645 .......... .......... .......... .......... .......... .......... 143 TTTCTCAGAT GTACGGGTGG AACTTGTTAA GTCTCGTCCC ATGACGTGAC TTCTCTTGGT 67705 .......... .......... .......... .......... .......... .......... 143 GACACATTTT CCTGGGTTTA TTTTATTAGT CTGGTTGGTA TAGGTCTTTA CACGACTTAT 67765 .......... .......... .......... .......... .......... .......... 143 TAGTACATCT ATTTGGGCCT TCCCTTTGTT GCTGTATTCT CTGTCGTCTC TTTTGCTTCT 67825 .......... .......... .......... .......... .......... .......... 143 TTTATGTGGT GGGATTTATA TATTCTACTC TTGGTAAGTA AATGGATGTG CAGTTTTGGT 67885 .......... .......... .......... .......... .......... .......... 143 ATATGCAGGC TACTGAATGA ATAGTATAGA ATGTTATCTG AGGGGGCCTT TAGAAGTTTG 67945 .......... .......... .......... .......... .......... .......... 143 TTCTTTATGT TTGCAGCCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA 68005 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CCGC CTTCCGCATC TCCATGCTTT CTGAATGTGC CGAGTGGGGA 187 GAGTAATTGT TGAG-GCTGT ACCAGCAAGG GTGGATCGCT GCGTGGTGGC GAAGAGTCCA 68064 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAATTGT TGAGAGCTGT ACCAGCAAGG GTGGATCGCT GCGTGGTGGC GAAGAGTCCA 247 CTTTTACCAA TCAAGCGTCG TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA 68124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTACCAA TCAAGCGTCG TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA 307 -GCTTTAGTT TCTTT-GAAC ATTTTGTGAT TATATGCAGT TATGTCTAGA CTTGCACCTT 68182 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTTTAGTT TCTTTAGAAC ATTTTGTGAT TATATGCAGT TATGTCTAGA CTTGCACCTT 367 CTGTTCTTCT ATATATGCGA CTTCCAATTC TCTCCCGTCT GTGATGGCAA TAATTGGTGC 68242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCTTCT ATATATGCGA CTTCCAATTC TCTCCCGTCT GTGATGGCAA TAATTGGTGC 427 ACAGCAGGAG TTACTGGAGC TTAAATTGGT TTTAGGTTGG CATCTTGAAA GTGCTGCTAG 68302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCAGGAG TTACTGGAGC TTAAATTGGT TTTAGGTTGG CATCTTGAAA GTGCTGCTAG 487 TCGGTTTAAT CATGGTTTGA AGAGAATAAA ACTGTAGCAA ACATCGGTGG CGTTGTATTT 68362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGTTTAAT CATGGTTTGA AGAGAATAAA ACTGTAGCAA ACATCGGTGG CGTTGTATTT 547 TAACAAAAAC TTAGGCATTG TACTGTTATC ACTTTGAAGC TGAGGGGTGA 68412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAAAAAC TTAGGCATTG TACTGTTATC ACTTTGAAGC TGAGGGGTGA 597 hqPGS_C08HBa0320P23.1+_SGN-E302651+ (66266 66307,66393 66488,67962 68412) ******************************************************************************** EST sequence 23 +strand 512 n (File: SGN-E213753+) 1 GGGATTAATA ATATCATTAA TACACTCAGC TTTCACTTTA GTGTACCCAA GTCACAAATG 61 TTTTTATAAT GAAGTTAGTA ACTTTACCTA AATATCATAG AATCACTGAA CTATATTTTT 121 AATAAAAGTC TGTTACTGAG GAGAGAAGCT AAAATTTGCC TGAATATCAT GGAGTCGCTT 181 AGAGGGAAAC AAATAAGACA TTCTGTATGA TATTTGAGTA AAGTGAATGA TTCTTTTTAT 241 TACAAAACAT TGTTTAGTGA CTTCTAGTGA TATTTAGCCA AAGTTGAGTG ACTATTGACT 301 TGTAAAGTAC CACTTTGTTC CTCTTGGAGT GGTTTATTCA AGAATTGATT GGATTTGTTT 361 TTATGGGACA TGACAAATTT GTATTCCAAT AAATCAAAAA CTAGATTGAT TAAGAATTGA 421 GTGGCAAGTG CAATTTACTC TTTAAGTATA CCATTTATTT GACCTGGAAT ACGTGGTACT 481 GCATATATTT TTACCTGGAT CTTTGAATTT CT Predicted gene structure (within gDNA segment 66539 to 68260): Exon 1 67139 67650 ( 512 n); cDNA 1 512 ( 512 n); score: 0.988 MATCH C08HBa0320P23.1+ SGN-E213753+ 0.988 512 1.000 C PGS_C08HBa0320P23.1+_SGN-E213753+ (67139 67650) Alignment (genomic DNA sequence = upper lines): GGGATTAATA ATATCATTAA TACACTCAGC TTTCACTTTA GTGTACCCAA GTCACAAATG 67198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTAATA ATATCATTAA TACACTCAGC TTTCACTTTA GTGTACCCAA GTCACAAATG 60 TTTTTATAAT GAAGTTAGTA ACTTTACCTA AATATCATAG AATCACTGAA CTATATTTTT 67258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTATAAT GAAGTTAGTA ACTTTACCTA AATATCATAG AATCACTGAA CTATATTTTT 120 AATAAAAGTC TGTTACTGAG GAGAGAAGCT AAAATTTGCC TGAATATCAT GGAGTCGCTT 67318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAAGTC TGTTACTGAG GAGAGAAGCT AAAATTTGCC TGAATATCAT GGAGTCGCTT 180 AGAGGGAAAC AAATAAGACA TTCTGTATGA TATTTGAGTA AAGTGAATGA TTCTTTTTAT 67378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGGAAAC AAATAAGACA TTCTGTATGA TATTTGAGTA AAGTGAATGA TTCTTTTTAT 240 TACAAAACAT TGTTTAGTGA CTTCTAGTGA TATTTAGCCA AAGTTGAGTG ACTATTGACT 67438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAACAT TGTTTAGTGA CTTCTAGTGA TATTTAGCCA AAGTTGAGTG ACTATTGACT 300 TGTAAAGTAC CACTTTGTTC CTCTTGTAGT GTTTTATTCA AGAATTGATT GGATTTGTTT 67498 |||||||||| |||||||||| |||||| ||| | |||||||| |||||||||| |||||||||| TGTAAAGTAC CACTTTGTTC CTCTTGGAGT GGTTTATTCA AGAATTGATT GGATTTGTTT 360 TTATGGTACA TGACAAATTT GTATTCCAAT AAATCAAAAA CTAGATTGAT TAGGAATTGA 67558 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TTATGGGACA TGACAAATTT GTATTCCAAT AAATCAAAAA CTAGATTGAT TAAGAATTGA 420 GTGGCAAGTG CAATTTACTC TTTAAGTATA CCATTTATTT GACCTGTAGT ACGTGGTACT 67618 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | |||||||||| GTGGCAAGTG CAATTTACTC TTTAAGTATA CCATTTATTT GACCTGGAAT ACGTGGTACT 480 GCATATATTT TTACCTGGAT CTTTGAATTT CT 67650 |||||||||| |||||||||| |||||||||| || GCATATATTT TTACCTGGAT CTTTGAATTT CT 512 hqPGS_C08HBa0320P23.1+_SGN-E213753+ (67139 67650) ******************************************************************************** EST sequence 84 -strand 486 n (File: SGN-E252647-) 1 GTCCACTTTT ACCAATCAAG CGTCGTCCTC TTCTCTCTAT CTCTCTTTGT TTTTGGTGTT 61 ATGTAGCTTT AGTTTCTTTG AACATTTTGT GATTATATGC AGTTATGTCT AGACTTGCAC 121 CTTCTGTTCT TCTATATATG CGACTTCCAA TTCTCTCCCG TCTGTGATGG CAATAATTGG 181 TGCACAGCAG GAGTTACTGG AGCTTAAATT GGTTTTAGGT TGGCATCTTG AAAGTGCTGC 241 TAGTCGGTTT AATCATGGTT TGAAGAGAAT AAAACTGTAG CAAACATCGG TGGCGTTGTA 301 TTTTAACAAA AACTTAGCAT TGTACTGTTA TCACTTTGAA GCTGAGGGGT GAAATTTTTC 361 CTTTGAGTTT TCGCATTATT ATGTTTCTAA TTCACTTGCC TAAAAATTCT TGAACATTGT 421 TATAATAGCC TTCTGGTATG AACTTGTAAT ATTTCACTGG TAAAAAAAAA AAAAAAAAAA 481 ACTCGA Predicted gene structure (within gDNA segment 67450 to 69362): Exon 1 68060 68546 ( 487 n); cDNA 1 486 ( 486 n); score: 0.971 MATCH C08HBa0320P23.1+ SGN-E252647- 0.971 487 1.002 C PGS_C08HBa0320P23.1+_SGN-E252647- (68060 68546) Alignment (genomic DNA sequence = upper lines): GTCCACTTTT ACCAATCAAG CGTCGTCCTC TTCTCTCTAT CTCTCTTTGT TTTTGGTGTT 68119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCACTTTT ACCAATCAAG CGTCGTCCTC TTCTCTCTAT CTCTCTTTGT TTTTGGTGTT 60 ATGTAGCTTT AGTTTCTTTG AACATTTTGT GATTATATGC AGTTATGTCT AGACTTGCAC 68179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCTTT AGTTTCTTTG AACATTTTGT GATTATATGC AGTTATGTCT AGACTTGCAC 120 CTTCTGTTCT TCTATATATG CGACTTCCAA TTCTCTCCCG TCTGTGATGG CAATAATTGG 68239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTTCT TCTATATATG CGACTTCCAA TTCTCTCCCG TCTGTGATGG CAATAATTGG 180 TGCACAGCAG GAGTTACTGG AGCTTAAATT GGTTTTAGGT TGGCATCTTG AAAGTGCTGC 68299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACAGCAG GAGTTACTGG AGCTTAAATT GGTTTTAGGT TGGCATCTTG AAAGTGCTGC 240 TAGTCGGTTT AATCATGGTT TGAAGAGAAT AAAACTGTAG CAAACATCGG TGGCGTTGTA 68359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTCGGTTT AATCATGGTT TGAAGAGAAT AAAACTGTAG CAAACATCGG TGGCGTTGTA 300 TTTTAACAAA AACTTAGGCA TTGTACTGTT ATCACTTTGA AGCTGAGGGG TGAAATTTTT 68419 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAACAAA AACTTA-GCA TTGTACTGTT ATCACTTTGA AGCTGAGGGG TGAAATTTTT 359 CCTTTGAGTT TTCGCATTAT TATGTTTCTA ATTCACTTGC CTAAAAATTC TTGAACATTG 68479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTGAGTT TTCGCATTAT TATGTTTCTA ATTCACTTGC CTAAAAATTC TTGAACATTG 419 TTATAATAGC CTTCTGGTAT GAACTTGTAA TATTTCACTG GTACAATATG AATTTCTCTA 68539 |||||||||| |||||||||| |||||||||| |||||||||| ||| || | || | TTATAATAGC CTTCTGGTAT GAACTTGTAA TATTTCACTG GTAAAAAAAA AAAAAAAAAA 479 GAATCGA 68546 | |||| AACTCGA 486 hqPGS_C08HBa0320P23.1+_SGN-E252647- (68060 68546) ******************************************************************************** EST sequence 65 -strand 474 n (File: SGN-E549494-) 1 TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 61 TTTGTGATTA GATGCAGTTA TGTCGAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 121 TCCAATTCTC TCCTGTCTGT GATGGCAATA ATTGGTGCAC AGCAGAAGTT ACTGGAGCTT 181 AAATTGGTTT TAGGTTGGGT GATGTGCGAC CAACTACGTT CCCCACCCCA CCCCCTGCCA 241 TTGAAAATAC TTTCTATTTC AAGGTGGCAT CTTAAAAGTG CCGCTAGTCG GTTTAATCAT 301 GGTTTGAAGA GAATAAAACT GTAGCAAACA TCGGTGGCGT TGTATTTTAA CAAAAGCTTA 361 GGCGTTGTAC TGTTATCACT TTAAAGCTGA GGGGTTAAAT TTTTCCTTTC TGAAAAAAAA 421 AAAAAAAAAA AAAAAAAAAC TGGAGACTAG TTCTCTCTCT GGGGGGGCCC GGTA Predicted gene structure (within gDNA segment 67475 to 69917): Exon 1 68085 68281 ( 197 n); cDNA 1 197 ( 197 n); score: 0.980 PPA cDNA 424 440 MATCH C08HBa0320P23.1+ SGN-E549494- 0.980 197 0.416 C PGS_C08HBa0320P23.1+_SGN-E549494- (68085 68281) Alignment (genomic DNA sequence = upper lines): TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 68144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 60 TTTGTGATTA TATGCAGTTA TGTCTAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 68204 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TTTGTGATTA GATGCAGTTA TGTCGAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 120 TCCAATTCTC TCCCGTCTGT GATGGCAATA ATTGGTGCAC AGCAGGAGTT ACTGGAGCTT 68264 |||||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| |||||||||| TCCAATTCTC TCCTGTCTGT GATGGCAATA ATTGGTGCAC AGCAGAAGTT ACTGGAGCTT 180 AAATTGGTTT TAGGTTG 68281 |||||||||| ||||||| AAATTGGTTT TAGGTTG 197 hqPGS_C08HBa0320P23.1+_SGN-E549494- (68085 68281) ******************************************************************************** EST sequence 91 +strand 819 n (File: SGN-E555284+) 1 GGCTTCTTCT TCTTCCTCTT CTTCTTCTTC AGTGGCTCTC AGTTTTCTCT ACCAAAACCC 61 CATTAAAGCT TCACTCTCAA TTCCAAAAGC ACTTTCTCCT TACTCAAAAC TCACATTCCC 121 ATCTATTGCG ACCTTTTATT CTGCAATTCC CCGTTTCGAT TACAGTAATT TCAGAAAAAT 181 CAATCCATGT CTTCATTGCA GCAATCTTCC TACTGCTTCC ACAAATAACA CGCATTACGA 241 GTTTTCAGAT GGCTCCTCTG AGGTGGAGCT AAGATTAGAA CTTGGGCAGG GAGATGTAAC 301 TCCTAAGGAT ATATATGTAG ATGCAAATGA GAGCTCATTA GCAATTAGAG TACAGCAATC 361 TGGAATTGTT CGGACTCTCA TGGAAACCAG TACTCTGTAT GAGAAAATAA AACCTGCAGA 421 GACAATATGG TACATAGATG AAGATCAATT AGTAATTAGC TTGAAGAAGC AAAACTCCGA 481 GTTGAAATGG CCTGACATTG TGGAGTCTTG GGAGTCCCTA AGTGCTGGAA TTACACAACT 541 CCTTAGAGGA ACATCAATAT ACTTAGTTGG GGAATCTACT GAAATCAACC AGAGGATTGC 601 TCGAGAACTG GCTGTTGGAC TAGGGTACAC TCCACTTTGT ACAAAGGAGC TGCTAGAAAC 661 ATATGCCAAG CAATCAATGG AAACGTGGGT TAATGAGGAA GGGTCTGATG CTGTAGCAGA 721 AGCAGAAAAT GCTATACTAG AAAATCTGAG TAGCCAAGCC CGTGCTGTTA TTGCCACCTT 781 GGGAGGGAAA AAAGGCGCTG CTGGAAAATT GAACCAATG Predicted gene structure (within gDNA segment 73828 to 69982): Exon 1 73228 72988 ( 241 n); cDNA 1 241 ( 241 n); score: 0.996 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 242 429 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71587 ( 195 n); cDNA 430 624 ( 195 n); score: 1.000 Intron 3 71586 71259 ( 328 n); Pd: 0.857 (s: 1.00), Pa: 0.863 (s: 1.00) Exon 4 71258 71197 ( 62 n); cDNA 625 686 ( 62 n); score: 1.000 Intron 4 71196 70923 ( 274 n); Pd: 0.986 (s: 1.00), Pa: 0.998 (s: 0.96) Exon 5 70922 70856 ( 67 n); cDNA 687 753 ( 67 n); score: 0.940 Intron 5 70855 70775 ( 81 n); Pd: 0.992 (s: 0.94), Pa: 0.999 (s: 0.96) Exon 6 70774 70709 ( 66 n); cDNA 754 819 ( 66 n); score: 0.939 MATCH C08HBa0320P23.1- SGN-E555284+ 0.989 819 1.000 C PGS_C08HBa0320P23.1-_SGN-E555284+ (73228 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70709) Alignment (genomic DNA sequence = upper lines): GGCTTCTTCT TCTTCCTCTT CTTCTTCTTC AGTGGCTCTC AGTTTTCTCT ACCAAAACCC 73169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTCTTCT TCTTCCTCTT CTTCTTCTTC AGTGGCTCTC AGTTTTCTCT ACCAAAACCC 60 CATTAAAGCT TCACTCTCAA TTCCAAAAGC TCTTTCTCCT TACTCAAAAC TCACATTCCC 73109 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CATTAAAGCT TCACTCTCAA TTCCAAAAGC ACTTTCTCCT TACTCAAAAC TCACATTCCC 120 ATCTATTGCG ACCTTTTATT CTGCAATTCC CCGTTTCGAT TACAGTAATT TCAGAAAAAT 73049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATTGCG ACCTTTTATT CTGCAATTCC CCGTTTCGAT TACAGTAATT TCAGAAAAAT 180 CAATCCATGT CTTCATTGCA GCAATCTTCC TACTGCTTCC ACAAATAACA CGCATTACGA 72989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCCATGT CTTCATTGCA GCAATCTTCC TACTGCTTCC ACAAATAACA CGCATTACGA 240 GGTAATTTTT TATTTTTCAT TTAAGTACAT GAATACTTTA ATCATAGACT CACTTGGCTG 72929 | G......... .......... .......... .......... .......... .......... 241 CTACGCAAAA TTCATCTTCT TTTGGGGAAA ACTGTATTCT ACTTTTTTGC CACTGACATA 72869 .......... .......... .......... .......... .......... .......... 241 TGCAACTTAT CATTACGTTC AATCAAATAA CAGATTTGTT TAGTAATTAA CTTTCGTATA 72809 .......... .......... .......... .......... .......... .......... 241 TTTTGATTAA ATGTTTTAAG TAGTACAAAC ACATCTTTAA GTCTAATTAT TGTTAACGTT 72749 .......... .......... .......... .......... .......... .......... 241 TATTTGCAAA TTCGAGCTAC CCAAATGATG CATATTATAT GTGGAAATTG CATTAATACA 72689 .......... .......... .......... .......... .......... .......... 241 TATTATGTAT TGTTTCATAA TGTACTGTAT TGTATCATAT TGTGTTGTTT AATGAATACA 72629 .......... .......... .......... .......... .......... .......... 241 ATTGTATTGA TTGTATCGTT CTCCGTCGTT ACATAATGTC ACACATTCAT AATTTTTTGA 72569 .......... .......... .......... .......... .......... .......... 241 TTGGTAAACC TACAAGAAGT TGTAGGATAC GGGCAGAGTC ACTATGAAAA GGTAGGGTAC 72509 .......... .......... .......... .......... .......... .......... 241 ATGATAAAAA CAGAATTATT AGTAAATAAT AAGTAAGAGA CAAAATGAGA AGAAAATACT 72449 .......... .......... .......... .......... .......... .......... 241 AAGATACAAA ATGGGTCATT TCGTTGTTAA CTAACGATAT GGATTTAAAC GATACAATAC 72389 .......... .......... .......... .......... .......... .......... 241 AATGGAATAT AAGTAACAAT CAAAATAGAT ATTGTACTTT AAATAACAAT ACAATGCAAT 72329 .......... .......... .......... .......... .......... .......... 241 ACAACGGGTA ACAACCATCC AAACAAGGTG CAAGTCTACA TAGTAACCTG TATCCAACAA 72269 .......... .......... .......... .......... .......... .......... 241 AATATTTTGT TCTTGGTATT TGTTTGTGAA ATTTACCTCC ACGAGGTAGG GGTGATGTCT 72209 .......... .......... .......... .......... .......... .......... 241 GCATACACTC TACCTTAACC GAGACCGCAC ATGTGGAATT TCACTGTGCG TGTTGTTCTT 72149 .......... .......... .......... .......... .......... .......... 241 ATTGTATTTG GTAGTAAACT TTTAAGATAG TATCAACTAC CTGTAAACTT TGCTATTATT 72089 .......... .......... .......... .......... .......... .......... 241 CAGAATGAGT TTGCTTCTCT TTTCCGACCA ATTTGTGGAA CTTATGCAGT TTTCAGATGG 72029 | |||||||||| .......... .......... .......... .......... .........T TTTCAGATGG 252 CTCCTCTGAG GTGGAGCTAA GATTAGAACT TGGGCAGGGA GATGTAACTC CTAAGGATAT 71969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTCTGAG GTGGAGCTAA GATTAGAACT TGGGCAGGGA GATGTAACTC CTAAGGATAT 312 ATATGTAGAT GCAAATGAGA GCTCATTAGC AATTAGAGTA CAGCAATCTG GAATTGTTCG 71909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGAT GCAAATGAGA GCTCATTAGC AATTAGAGTA CAGCAATCTG GAATTGTTCG 372 GACTCTCATG GAAACCAGTA CTCTGTATGA GAAAATAAAA CCTGCAGAGA CAATATGGTA 71849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GACTCTCATG GAAACCAGTA CTCTGTATGA GAAAATAAAA CCTGCAGAGA CAATATG... 429 AATGAAAACA TAATTTTAGT GAATCTGTTT TATCCTTTTG CAACGTTTTA TGAAACAAAT 71789 .......... .......... .......... .......... .......... .......... 429 CGTGTAGGTA CATAGATGAA GATCAATTAG TAATTAGCTT GAAGAAGCAA AACTCCGAGT 71729 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTA CATAGATGAA GATCAATTAG TAATTAGCTT GAAGAAGCAA AACTCCGAGT 482 TGAAATGGCC TGACATTGTG GAGTCTTGGG AGTCCCTAAG TGCTGGAATT ACACAACTCC 71669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATGGCC TGACATTGTG GAGTCTTGGG AGTCCCTAAG TGCTGGAATT ACACAACTCC 542 TTAGAGGAAC ATCAATATAC TTAGTTGGGG AATCTACTGA AATCAACCAG AGGATTGCTC 71609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGGAAC ATCAATATAC TTAGTTGGGG AATCTACTGA AATCAACCAG AGGATTGCTC 602 GAGAACTGGC TGTTGGACTA GGGTATGTTC CTCACTTTCA TGAGTAAATG ATAATGCTGC 71549 |||||||||| |||||||||| || GAGAACTGGC TGTTGGACTA GG........ .......... .......... .......... 624 ATAAAGTGAC GGAGCTACAG TATTTCGTAT ATGCCATATA TTAGTCCTCT TTCACCGAAC 71489 .......... .......... .......... .......... .......... .......... 624 CTAGGTGAAA AGAGATGAAT GGATCATGAT AAATAGCCTG AATGGTGGTT TTCCTTAAAA 71429 .......... .......... .......... .......... .......... .......... 624 ATCTGTTTTT TTGACTTGAC AAAAGATATG GATTAGTTAT AATTTTCCTT CTTCCACATT 71369 .......... .......... .......... .......... .......... .......... 624 CATGATCGTC CATTTGCATT AAGTTACTGC AACCCCTGCA CCCTTGGGAT TCTTGCTTGC 71309 .......... .......... .......... .......... .......... .......... 624 TTCTTTAGTC AAGATCTTCT AAATTTTCGT TCAACTCTTA TGGTGGTTAG GTACACTCCA 71249 |||||||||| .......... .......... .......... .......... .......... GTACACTCCA 634 CTTTGTACAA AGGAGCTGCT AGAAACATAT GCCAAGCAAT CAATGGAAAC GTGTGAGTTA 71189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CTTTGTACAA AGGAGCTGCT AGAAACATAT GCCAAGCAAT CAATGGAAAC GT........ 686 CATCCATTTT TCTTTTCACA GAGAAGATAA TTATTGTTAA ACAATAAGTT TTACAAGGAA 71129 .......... .......... .......... .......... .......... .......... 686 GAGCAATAGA AAAAGAATTG TTTACATGGA AGATCTGAAT TCTCACAACT GCACAATGAT 71069 .......... .......... .......... .......... .......... .......... 686 AAATATTGGA ATTTGAACAT GTGTCAATGA TGCTCACTGG AACAATTTAT TTACTTTCTC 71009 .......... .......... .......... .......... .......... .......... 686 CAAAACATCT AAAGGCATAG TAGCTCTTTG TTTGGCTTCA CTTCCTTTTT CTTTTCTTTA 70949 .......... .......... .......... .......... .......... .......... 686 TTCAATTTTT CTCTAACCAA TTCCAGGGGT TAATGAGGAG GGGTCTGATG CTGTAGCAGA 70889 |||| ||||||||| |||||||||| |||||||||| .......... .......... ......GGGT TAATGAGGAA GGGTCTGATG CTGTAGCAGA 720 AGCAGAAAGT GCTATACTAG AGAGTCTGAG TAGGTATTTA CTTTGTCTTG CATATCTTAC 70829 |||||||| | |||||||||| | | |||||| ||| AGCAGAAAAT GCTATACTAG AAAATCTGAG TAG....... .......... .......... 753 TCATTTCACT TGGAACTGGA AGTAAAAATG TATTTATATT TGATTCTTGT TTAGCCAAGC 70769 |||||| .......... .......... .......... .......... .......... ....CCAAGC 759 CCGTGCTGTT ATTGCAACCT TGGGAGGGAA GAAAGGCGCT GCTGGAAGAG TGAACCAATG 70709 |||||||||| ||||| |||| |||||||||| ||||||||| ||||||| | |||||||||| CCGTGCTGTT ATTGCCACCT TGGGAGGGAA AAAAGGCGCT GCTGGAAAAT TGAACCAATG 819 hqPGS_C08HBa0320P23.1-_SGN-E555284+ (73228 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70709) ******************************************************************************** EST sequence 138 +strand 575 n (File: SGN-E298234+) 1 TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT GTCTACCAAA ACCGCATTAA 61 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 121 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 181 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGTTTTC 241 AGATGGCTCC TCTGAGGTGG AGCTAAGATT AGAACTTGGG CAGGGAGATG TAACTCCTAA 301 GGATATATAT GTAGATGCAA ATGAGAGCTC ATTAGCAATT AGAGTACAGC AATCTGGAAT 361 TGTTCGGACT CTCATGGAAA CCAGTACTCT GTATGAGAAA ATAAAACCTG CAGAGACAAT 421 ATGGTACATA GATGAAGATC AATTAGTAAT TAGCTTGAAG AAGCAAAACT CCGAGTTGAA 481 ATGGCCTGAC ATTGTGGAGT CTTGGGAGTC CCTAAGTGCT GGAATTACAC AACTCCTTAG 541 AGGAACATCA ATATACTTAG TTGGGGAATC TACTG Predicted gene structure (within gDNA segment 73903 to 71020): Exon 1 73222 72988 ( 235 n); cDNA 1 235 ( 235 n); score: 0.991 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 236 423 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71630 ( 152 n); cDNA 424 575 ( 152 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E298234+ 0.997 575 1.000 C PGS_C08HBa0320P23.1-_SGN-E298234+ (73222 72988,72039 71852,71781 71630) Alignment (genomic DNA sequence = upper lines): TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 73163 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT GTCTACCAAA ACCGCATTAA 60 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 73103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 120 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 73043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 180 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGGTAAT 72983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAG..... 235 TTTTTATTTT TCATTTAAGT ACATGAATAC TTTAATCATA GACTCACTTG GCTGCTACGC 72923 .......... .......... .......... .......... .......... .......... 235 AAAATTCATC TTCTTTTGGG GAAAACTGTA TTCTACTTTT TTGCCACTGA CATATGCAAC 72863 .......... .......... .......... .......... .......... .......... 235 TTATCATTAC GTTCAATCAA ATAACAGATT TGTTTAGTAA TTAACTTTCG TATATTTTGA 72803 .......... .......... .......... .......... .......... .......... 235 TTAAATGTTT TAAGTAGTAC AAACACATCT TTAAGTCTAA TTATTGTTAA CGTTTATTTG 72743 .......... .......... .......... .......... .......... .......... 235 CAAATTCGAG CTACCCAAAT GATGCATATT ATATGTGGAA ATTGCATTAA TACATATTAT 72683 .......... .......... .......... .......... .......... .......... 235 GTATTGTTTC ATAATGTACT GTATTGTATC ATATTGTGTT GTTTAATGAA TACAATTGTA 72623 .......... .......... .......... .......... .......... .......... 235 TTGATTGTAT CGTTCTCCGT CGTTACATAA TGTCACACAT TCATAATTTT TTGATTGGTA 72563 .......... .......... .......... .......... .......... .......... 235 AACCTACAAG AAGTTGTAGG ATACGGGCAG AGTCACTATG AAAAGGTAGG GTACATGATA 72503 .......... .......... .......... .......... .......... .......... 235 AAAACAGAAT TATTAGTAAA TAATAAGTAA GAGACAAAAT GAGAAGAAAA TACTAAGATA 72443 .......... .......... .......... .......... .......... .......... 235 CAAAATGGGT CATTTCGTTG TTAACTAACG ATATGGATTT AAACGATACA ATACAATGGA 72383 .......... .......... .......... .......... .......... .......... 235 ATATAAGTAA CAATCAAAAT AGATATTGTA CTTTAAATAA CAATACAATG CAATACAACG 72323 .......... .......... .......... .......... .......... .......... 235 GGTAACAACC ATCCAAACAA GGTGCAAGTC TACATAGTAA CCTGTATCCA ACAAAATATT 72263 .......... .......... .......... .......... .......... .......... 235 TTGTTCTTGG TATTTGTTTG TGAAATTTAC CTCCACGAGG TAGGGGTGAT GTCTGCATAC 72203 .......... .......... .......... .......... .......... .......... 235 ACTCTACCTT AACCGAGACC GCACATGTGG AATTTCACTG TGCGTGTTGT TCTTATTGTA 72143 .......... .......... .......... .......... .......... .......... 235 TTTGGTAGTA AACTTTTAAG ATAGTATCAA CTACCTGTAA ACTTTGCTAT TATTCAGAAT 72083 .......... .......... .......... .......... .......... .......... 235 GAGTTTGCTT CTCTTTTCCG ACCAATTTGT GGAACTTATG CAGTTTTCAG ATGGCTCCTC 72023 ||||||| |||||||||| .......... .......... .......... .......... ...TTTTCAG ATGGCTCCTC 252 TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 71963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 312 AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 71903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 372 CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT GGTAAATGAA 71843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT G......... 423 AACATAATTT TAGTGAATCT GTTTTATCCT TTTGCAACGT TTTATGAAAC AAATCGTGTA 71783 .......... .......... .......... .......... .......... .......... 423 GGTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 71723 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 482 GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA CTCCTTAGAG 71663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA CTCCTTAGAG 542 GAACATCAAT ATACTTAGTT GGGGAATCTA CTG 71630 |||||||||| |||||||||| |||||||||| ||| GAACATCAAT ATACTTAGTT GGGGAATCTA CTG 575 hqPGS_C08HBa0320P23.1-_SGN-E298234+ (73222 72988,72039 71852,71781 71630) ******************************************************************************** EST sequence 79 +strand 578 n (File: SGN-E272199+) 1 CTTCTTCTTC TTCCTCTTCT TCTTCTTCAG TGGCTCTCAG TTTTCTCTAC CAAAACCCCA 61 TTAAAGCTTC ACTCTCAATT CCAAAAGCTC TTTCTCCTTA CTCAAAACTC ACATTCCCAT 121 CTATTGCGAC CTTTTATTCT GCAATTCCCC GTTTCGATTA CAGTAATTTC AGAAAAATCA 181 ATCCATGTCT TCATTGCAGC AATCTTCCTA CTGCTTCCAC AAATAACACG CATTACGAGT 241 TTTCAGATGG CTCCTCTGAG GTGGAGCTAA GATTAGAACT TGGGCAGGGA GATGTAACTC 301 CTAAGGATAT ATATGTAGAT GCAAATGAGA GCTCATTAGC AATTAGAGTA CAGCAATCTG 361 GAATTGTTCG GACTCTCATG GAAACCAGTA CTCTGTATGA GAAAATAAAA CCTGCAGAGA 421 CAATATGGTA CATAGATGAA GATCAATTAG TAATTAGCTT GAAGAAGCAA AACTCCGAGT 481 TGAAATGGCC TGACATTGTG GAGTCTTGGG AGTCCCTAAG TGCTGGAATT ACACAACTCC 541 TTAGAGGAAC ATCAATATAC TTAGTTGGGG AATCTACT Predicted gene structure (within gDNA segment 73943 to 71021): Exon 1 73226 72988 ( 239 n); cDNA 1 239 ( 239 n); score: 1.000 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 240 427 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71631 ( 151 n); cDNA 428 578 ( 151 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E272199+ 1.000 578 1.000 C PGS_C08HBa0320P23.1-_SGN-E272199+ (73226 72988,72039 71852,71781 71631) Alignment (genomic DNA sequence = upper lines): CTTCTTCTTC TTCCTCTTCT TCTTCTTCAG TGGCTCTCAG TTTTCTCTAC CAAAACCCCA 73167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTCTTC TTCCTCTTCT TCTTCTTCAG TGGCTCTCAG TTTTCTCTAC CAAAACCCCA 60 TTAAAGCTTC ACTCTCAATT CCAAAAGCTC TTTCTCCTTA CTCAAAACTC ACATTCCCAT 73107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGCTTC ACTCTCAATT CCAAAAGCTC TTTCTCCTTA CTCAAAACTC ACATTCCCAT 120 CTATTGCGAC CTTTTATTCT GCAATTCCCC GTTTCGATTA CAGTAATTTC AGAAAAATCA 73047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGCGAC CTTTTATTCT GCAATTCCCC GTTTCGATTA CAGTAATTTC AGAAAAATCA 180 ATCCATGTCT TCATTGCAGC AATCTTCCTA CTGCTTCCAC AAATAACACG CATTACGAGG 72987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATCCATGTCT TCATTGCAGC AATCTTCCTA CTGCTTCCAC AAATAACACG CATTACGAG. 239 TAATTTTTTA TTTTTCATTT AAGTACATGA ATACTTTAAT CATAGACTCA CTTGGCTGCT 72927 .......... .......... .......... .......... .......... .......... 239 ACGCAAAATT CATCTTCTTT TGGGGAAAAC TGTATTCTAC TTTTTTGCCA CTGACATATG 72867 .......... .......... .......... .......... .......... .......... 239 CAACTTATCA TTACGTTCAA TCAAATAACA GATTTGTTTA GTAATTAACT TTCGTATATT 72807 .......... .......... .......... .......... .......... .......... 239 TTGATTAAAT GTTTTAAGTA GTACAAACAC ATCTTTAAGT CTAATTATTG TTAACGTTTA 72747 .......... .......... .......... .......... .......... .......... 239 TTTGCAAATT CGAGCTACCC AAATGATGCA TATTATATGT GGAAATTGCA TTAATACATA 72687 .......... .......... .......... .......... .......... .......... 239 TTATGTATTG TTTCATAATG TACTGTATTG TATCATATTG TGTTGTTTAA TGAATACAAT 72627 .......... .......... .......... .......... .......... .......... 239 TGTATTGATT GTATCGTTCT CCGTCGTTAC ATAATGTCAC ACATTCATAA TTTTTTGATT 72567 .......... .......... .......... .......... .......... .......... 239 GGTAAACCTA CAAGAAGTTG TAGGATACGG GCAGAGTCAC TATGAAAAGG TAGGGTACAT 72507 .......... .......... .......... .......... .......... .......... 239 GATAAAAACA GAATTATTAG TAAATAATAA GTAAGAGACA AAATGAGAAG AAAATACTAA 72447 .......... .......... .......... .......... .......... .......... 239 GATACAAAAT GGGTCATTTC GTTGTTAACT AACGATATGG ATTTAAACGA TACAATACAA 72387 .......... .......... .......... .......... .......... .......... 239 TGGAATATAA GTAACAATCA AAATAGATAT TGTACTTTAA ATAACAATAC AATGCAATAC 72327 .......... .......... .......... .......... .......... .......... 239 AACGGGTAAC AACCATCCAA ACAAGGTGCA AGTCTACATA GTAACCTGTA TCCAACAAAA 72267 .......... .......... .......... .......... .......... .......... 239 TATTTTGTTC TTGGTATTTG TTTGTGAAAT TTACCTCCAC GAGGTAGGGG TGATGTCTGC 72207 .......... .......... .......... .......... .......... .......... 239 ATACACTCTA CCTTAACCGA GACCGCACAT GTGGAATTTC ACTGTGCGTG TTGTTCTTAT 72147 .......... .......... .......... .......... .......... .......... 239 TGTATTTGGT AGTAAACTTT TAAGATAGTA TCAACTACCT GTAAACTTTG CTATTATTCA 72087 .......... .......... .......... .......... .......... .......... 239 GAATGAGTTT GCTTCTCTTT TCCGACCAAT TTGTGGAACT TATGCAGTTT TCAGATGGCT 72027 ||| |||||||||| .......... .......... .......... .......... .......TTT TCAGATGGCT 252 CCTCTGAGGT GGAGCTAAGA TTAGAACTTG GGCAGGGAGA TGTAACTCCT AAGGATATAT 71967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTGAGGT GGAGCTAAGA TTAGAACTTG GGCAGGGAGA TGTAACTCCT AAGGATATAT 312 ATGTAGATGC AAATGAGAGC TCATTAGCAA TTAGAGTACA GCAATCTGGA ATTGTTCGGA 71907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGATGC AAATGAGAGC TCATTAGCAA TTAGAGTACA GCAATCTGGA ATTGTTCGGA 372 CTCTCATGGA AACCAGTACT CTGTATGAGA AAATAAAACC TGCAGAGACA ATATGGTAAA 71847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTCTCATGGA AACCAGTACT CTGTATGAGA AAATAAAACC TGCAGAGACA ATATG..... 427 TGAAAACATA ATTTTAGTGA ATCTGTTTTA TCCTTTTGCA ACGTTTTATG AAACAAATCG 71787 .......... .......... .......... .......... .......... .......... 427 TGTAGGTACA TAGATGAAGA TCAATTAGTA ATTAGCTTGA AGAAGCAAAA CTCCGAGTTG 71727 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTACA TAGATGAAGA TCAATTAGTA ATTAGCTTGA AGAAGCAAAA CTCCGAGTTG 482 AAATGGCCTG ACATTGTGGA GTCTTGGGAG TCCCTAAGTG CTGGAATTAC ACAACTCCTT 71667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGCCTG ACATTGTGGA GTCTTGGGAG TCCCTAAGTG CTGGAATTAC ACAACTCCTT 542 AGAGGAACAT CAATATACTT AGTTGGGGAA TCTACT 71631 |||||||||| |||||||||| |||||||||| |||||| AGAGGAACAT CAATATACTT AGTTGGGGAA TCTACT 578 hqPGS_C08HBa0320P23.1-_SGN-E272199+ (73226 72988,72039 71852,71781 71631) ******************************************************************************** EST sequence 146 +strand 574 n (File: SGN-E301033+) 1 TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 61 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 121 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 181 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGTTTTC 241 AGATGGCTCC TCTGAGGTGG AGCTAAGATT AGAACTTGGG CAGGGAGATG TAACTCCTAA 301 GGATATATAT GTAGATGCAA ATGAGAGCTC ATTAGCAATT AGAGTACAGC AATCTGGAAT 361 TGTTCGGACT CTCATGGAAA CCAGTACTCT GTATGAGAAA ATAAAACCTG CAGAGACAAT 421 ATGGTACATA GATGAAGATC AATTAGTAAT TAGCTTGAAG AAGCAAAACT CCGAGTTGAA 481 ATGGCCTGAC ATTGTGGAGT CTTGGGAGTC CCTAAGTGCT GGAATTACAC AACTCCTTAG 541 AGGAACATCA ATATACTTAG TTGGGGAATC TACT Predicted gene structure (within gDNA segment 73903 to 71021): Exon 1 73222 72988 ( 235 n); cDNA 1 235 ( 235 n); score: 1.000 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 236 423 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71631 ( 151 n); cDNA 424 574 ( 151 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E301033+ 1.000 574 1.000 C PGS_C08HBa0320P23.1-_SGN-E301033+ (73222 72988,72039 71852,71781 71631) Alignment (genomic DNA sequence = upper lines): TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 73163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 60 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 73103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 120 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 73043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 180 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGGTAAT 72983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAG..... 235 TTTTTATTTT TCATTTAAGT ACATGAATAC TTTAATCATA GACTCACTTG GCTGCTACGC 72923 .......... .......... .......... .......... .......... .......... 235 AAAATTCATC TTCTTTTGGG GAAAACTGTA TTCTACTTTT TTGCCACTGA CATATGCAAC 72863 .......... .......... .......... .......... .......... .......... 235 TTATCATTAC GTTCAATCAA ATAACAGATT TGTTTAGTAA TTAACTTTCG TATATTTTGA 72803 .......... .......... .......... .......... .......... .......... 235 TTAAATGTTT TAAGTAGTAC AAACACATCT TTAAGTCTAA TTATTGTTAA CGTTTATTTG 72743 .......... .......... .......... .......... .......... .......... 235 CAAATTCGAG CTACCCAAAT GATGCATATT ATATGTGGAA ATTGCATTAA TACATATTAT 72683 .......... .......... .......... .......... .......... .......... 235 GTATTGTTTC ATAATGTACT GTATTGTATC ATATTGTGTT GTTTAATGAA TACAATTGTA 72623 .......... .......... .......... .......... .......... .......... 235 TTGATTGTAT CGTTCTCCGT CGTTACATAA TGTCACACAT TCATAATTTT TTGATTGGTA 72563 .......... .......... .......... .......... .......... .......... 235 AACCTACAAG AAGTTGTAGG ATACGGGCAG AGTCACTATG AAAAGGTAGG GTACATGATA 72503 .......... .......... .......... .......... .......... .......... 235 AAAACAGAAT TATTAGTAAA TAATAAGTAA GAGACAAAAT GAGAAGAAAA TACTAAGATA 72443 .......... .......... .......... .......... .......... .......... 235 CAAAATGGGT CATTTCGTTG TTAACTAACG ATATGGATTT AAACGATACA ATACAATGGA 72383 .......... .......... .......... .......... .......... .......... 235 ATATAAGTAA CAATCAAAAT AGATATTGTA CTTTAAATAA CAATACAATG CAATACAACG 72323 .......... .......... .......... .......... .......... .......... 235 GGTAACAACC ATCCAAACAA GGTGCAAGTC TACATAGTAA CCTGTATCCA ACAAAATATT 72263 .......... .......... .......... .......... .......... .......... 235 TTGTTCTTGG TATTTGTTTG TGAAATTTAC CTCCACGAGG TAGGGGTGAT GTCTGCATAC 72203 .......... .......... .......... .......... .......... .......... 235 ACTCTACCTT AACCGAGACC GCACATGTGG AATTTCACTG TGCGTGTTGT TCTTATTGTA 72143 .......... .......... .......... .......... .......... .......... 235 TTTGGTAGTA AACTTTTAAG ATAGTATCAA CTACCTGTAA ACTTTGCTAT TATTCAGAAT 72083 .......... .......... .......... .......... .......... .......... 235 GAGTTTGCTT CTCTTTTCCG ACCAATTTGT GGAACTTATG CAGTTTTCAG ATGGCTCCTC 72023 ||||||| |||||||||| .......... .......... .......... .......... ...TTTTCAG ATGGCTCCTC 252 TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 71963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 312 AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 71903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 372 CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT GGTAAATGAA 71843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT G......... 423 AACATAATTT TAGTGAATCT GTTTTATCCT TTTGCAACGT TTTATGAAAC AAATCGTGTA 71783 .......... .......... .......... .......... .......... .......... 423 GGTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 71723 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 482 GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA CTCCTTAGAG 71663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA CTCCTTAGAG 542 GAACATCAAT ATACTTAGTT GGGGAATCTA CT 71631 |||||||||| |||||||||| |||||||||| || GAACATCAAT ATACTTAGTT GGGGAATCTA CT 574 hqPGS_C08HBa0320P23.1-_SGN-E301033+ (73222 72988,72039 71852,71781 71631) ******************************************************************************** EST sequence 81 +strand 212 n (File: SGN-E250530+) 1 TTCGGACTCT CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCC TAGACAATAT 61 GGTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 121 GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA CTCCTTAGAG 181 GAACATCAAT ATACTTAGTT GGGGAATCTA CT Predicted gene structure (within gDNA segment 72512 to 71021): Exon 1 71912 71852 ( 61 n); cDNA 1 61 ( 61 n); score: 0.967 Intron 1 71851 71782 ( 70 n); Pd: 0.902 (s: 0.96), Pa: 0.992 (s: 1.00) Exon 2 71781 71631 ( 151 n); cDNA 62 212 ( 151 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E250530+ 0.991 212 1.000 C PGS_C08HBa0320P23.1-_SGN-E250530+ (71912 71852,71781 71631) Alignment (genomic DNA sequence = upper lines): TTCGGACTCT CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT 71853 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| TTCGGACTCT CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCC TAGACAATAT 60 GGTAAATGAA AACATAATTT TAGTGAATCT GTTTTATCCT TTTGCAACGT TTTATGAAAC 71793 | G......... .......... .......... .......... .......... .......... 61 AAATCGTGTA GGTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC 71733 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC 110 GAGTTGAAAT GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA 71673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGAAAT GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTACACAA 170 CTCCTTAGAG GAACATCAAT ATACTTAGTT GGGGAATCTA CT 71631 |||||||||| |||||||||| |||||||||| |||||||||| || CTCCTTAGAG GAACATCAAT ATACTTAGTT GGGGAATCTA CT 212 hqPGS_C08HBa0320P23.1-_SGN-E250530+ (71912 71852,71781 71631) ******************************************************************************** EST sequence 143 +strand 527 n (File: SGN-E302179+) 1 TTCTTCTTCC TCTTCTTCTT CTTCAGGGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 61 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 121 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 181 ATGTCTTCAT TGCCGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGTTTTC 241 AAATGGCTCC TCTGAGGTGG AGCTAAGATT AGAACTTGGG CAGGGAGATG TAACTCCTAA 301 GGATATATAT GTAGATGCAA ATGAGAGCTC ATTAGCAATT AGAGTACAGC AATCTGGAAT 361 TGTTCGGACT CTCATGGAAA CCAGTACTCT GTATGAGAAA ATAAAACCTG CAGAGACAAT 421 ATGGTNCATA GATGAAGATC AATTAGTAAT TAGCTTGAAG AAGCAAAACT CCCAGTTGAA 481 ATGGCCTGAC ATTGTGGAGT CTTGGGAGTC CCTAAGTGCT GGAATTA Predicted gene structure (within gDNA segment 73903 to 71068): Exon 1 73222 72988 ( 235 n); cDNA 1 235 ( 235 n); score: 0.991 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 0.98), Pa: 0.974 (s: 0.98) Exon 2 72039 71852 ( 188 n); cDNA 236 423 ( 188 n); score: 0.995 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 0.96) Exon 3 71781 71678 ( 104 n); cDNA 424 527 ( 104 n); score: 0.981 MATCH C08HBa0320P23.1- SGN-E302179+ 0.991 527 1.000 C PGS_C08HBa0320P23.1-_SGN-E302179+ (73222 72988,72039 71852,71781 71678) Alignment (genomic DNA sequence = upper lines): TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 73163 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTCTTCTTCC TCTTCTTCTT CTTCAGGGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 60 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 73103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 120 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 73043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 180 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGGTAAT 72983 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||| ATGTCTTCAT TGCCGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAG..... 235 TTTTTATTTT TCATTTAAGT ACATGAATAC TTTAATCATA GACTCACTTG GCTGCTACGC 72923 .......... .......... .......... .......... .......... .......... 235 AAAATTCATC TTCTTTTGGG GAAAACTGTA TTCTACTTTT TTGCCACTGA CATATGCAAC 72863 .......... .......... .......... .......... .......... .......... 235 TTATCATTAC GTTCAATCAA ATAACAGATT TGTTTAGTAA TTAACTTTCG TATATTTTGA 72803 .......... .......... .......... .......... .......... .......... 235 TTAAATGTTT TAAGTAGTAC AAACACATCT TTAAGTCTAA TTATTGTTAA CGTTTATTTG 72743 .......... .......... .......... .......... .......... .......... 235 CAAATTCGAG CTACCCAAAT GATGCATATT ATATGTGGAA ATTGCATTAA TACATATTAT 72683 .......... .......... .......... .......... .......... .......... 235 GTATTGTTTC ATAATGTACT GTATTGTATC ATATTGTGTT GTTTAATGAA TACAATTGTA 72623 .......... .......... .......... .......... .......... .......... 235 TTGATTGTAT CGTTCTCCGT CGTTACATAA TGTCACACAT TCATAATTTT TTGATTGGTA 72563 .......... .......... .......... .......... .......... .......... 235 AACCTACAAG AAGTTGTAGG ATACGGGCAG AGTCACTATG AAAAGGTAGG GTACATGATA 72503 .......... .......... .......... .......... .......... .......... 235 AAAACAGAAT TATTAGTAAA TAATAAGTAA GAGACAAAAT GAGAAGAAAA TACTAAGATA 72443 .......... .......... .......... .......... .......... .......... 235 CAAAATGGGT CATTTCGTTG TTAACTAACG ATATGGATTT AAACGATACA ATACAATGGA 72383 .......... .......... .......... .......... .......... .......... 235 ATATAAGTAA CAATCAAAAT AGATATTGTA CTTTAAATAA CAATACAATG CAATACAACG 72323 .......... .......... .......... .......... .......... .......... 235 GGTAACAACC ATCCAAACAA GGTGCAAGTC TACATAGTAA CCTGTATCCA ACAAAATATT 72263 .......... .......... .......... .......... .......... .......... 235 TTGTTCTTGG TATTTGTTTG TGAAATTTAC CTCCACGAGG TAGGGGTGAT GTCTGCATAC 72203 .......... .......... .......... .......... .......... .......... 235 ACTCTACCTT AACCGAGACC GCACATGTGG AATTTCACTG TGCGTGTTGT TCTTATTGTA 72143 .......... .......... .......... .......... .......... .......... 235 TTTGGTAGTA AACTTTTAAG ATAGTATCAA CTACCTGTAA ACTTTGCTAT TATTCAGAAT 72083 .......... .......... .......... .......... .......... .......... 235 GAGTTTGCTT CTCTTTTCCG ACCAATTTGT GGAACTTATG CAGTTTTCAG ATGGCTCCTC 72023 |||||| |||||||||| .......... .......... .......... .......... ...TTTTCAA ATGGCTCCTC 252 TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 71963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 312 AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 71903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 372 CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT GGTAAATGAA 71843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CATGGAAACC AGTACTCTGT ATGAGAAAAT AAAACCTGCA GAGACAATAT G......... 423 AACATAATTT TAGTGAATCT GTTTTATCCT TTTGCAACGT TTTATGAAAC AAATCGTGTA 71783 .......... .......... .......... .......... .......... .......... 423 GGTACATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC GAGTTGAAAT 71723 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| .GTNCATAGA TGAAGATCAA TTAGTAATTA GCTTGAAGAA GCAAAACTCC CAGTTGAAAT 482 GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTA 71678 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GGCCTGACAT TGTGGAGTCT TGGGAGTCCC TAAGTGCTGG AATTA 527 hqPGS_C08HBa0320P23.1-_SGN-E302179+ (73222 72988,72039 71852,71781 71678) ******************************************************************************** EST sequence 88 +strand 535 n (File: SGN-E296107+) 1 CAAACATGGC TTCTTCTTCT TTCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 61 AAAGCCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 121 CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 181 GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 241 ATTACGAGTT TTCAGATGGC TCCTCTGAGG TGGAGCTAAG ATTAGAACTT GGGCAGGGAG 301 ATGTAACTCC TAAGGATATA TATGTAGATG CAAATGAGAG CTCATTAGCA ATTAGAGTAC 361 AGCAATCTGG AATTGTTCGG ACTCTCATGG AAACCAGTAC TCTGTATGAG AAAATAAAAC 421 CTGCAGAGAC AATATGGTAC ATAGATGAAG ATCAATTAGT AATTAGCTTG AAGAAGCAAA 481 ACTCCGAGTT GAAATGGCCT GACATTGTGG AGTCTTGGGA GTTCCTAAGT GCTGG Predicted gene structure (within gDNA segment 73835 to 70956): Exon 1 73235 72988 ( 248 n); cDNA 1 248 ( 248 n); score: 0.992 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 249 436 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71683 ( 99 n); cDNA 437 535 ( 99 n); score: 0.990 MATCH C08HBa0320P23.1- SGN-E296107+ 0.994 535 1.000 C PGS_C08HBa0320P23.1-_SGN-E296107+ (73235 72988,72039 71852,71781 71683) Alignment (genomic DNA sequence = upper lines): CAAACATGGC TTCTTCTTCT TCCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 73176 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAACATGGC TTCTTCTTCT TTCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 60 AAAACCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 73116 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 120 CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 73056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 180 GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 72996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 240 ATTACGAGGT AATTTTTTAT TTTTCATTTA AGTACATGAA TACTTTAATC ATAGACTCAC 72936 |||||||| ATTACGAG.. .......... .......... .......... .......... .......... 248 TTGGCTGCTA CGCAAAATTC ATCTTCTTTT GGGGAAAACT GTATTCTACT TTTTTGCCAC 72876 .......... .......... .......... .......... .......... .......... 248 TGACATATGC AACTTATCAT TACGTTCAAT CAAATAACAG ATTTGTTTAG TAATTAACTT 72816 .......... .......... .......... .......... .......... .......... 248 TCGTATATTT TGATTAAATG TTTTAAGTAG TACAAACACA TCTTTAAGTC TAATTATTGT 72756 .......... .......... .......... .......... .......... .......... 248 TAACGTTTAT TTGCAAATTC GAGCTACCCA AATGATGCAT ATTATATGTG GAAATTGCAT 72696 .......... .......... .......... .......... .......... .......... 248 TAATACATAT TATGTATTGT TTCATAATGT ACTGTATTGT ATCATATTGT GTTGTTTAAT 72636 .......... .......... .......... .......... .......... .......... 248 GAATACAATT GTATTGATTG TATCGTTCTC CGTCGTTACA TAATGTCACA CATTCATAAT 72576 .......... .......... .......... .......... .......... .......... 248 TTTTTGATTG GTAAACCTAC AAGAAGTTGT AGGATACGGG CAGAGTCACT ATGAAAAGGT 72516 .......... .......... .......... .......... .......... .......... 248 AGGGTACATG ATAAAAACAG AATTATTAGT AAATAATAAG TAAGAGACAA AATGAGAAGA 72456 .......... .......... .......... .......... .......... .......... 248 AAATACTAAG ATACAAAATG GGTCATTTCG TTGTTAACTA ACGATATGGA TTTAAACGAT 72396 .......... .......... .......... .......... .......... .......... 248 ACAATACAAT GGAATATAAG TAACAATCAA AATAGATATT GTACTTTAAA TAACAATACA 72336 .......... .......... .......... .......... .......... .......... 248 ATGCAATACA ACGGGTAACA ACCATCCAAA CAAGGTGCAA GTCTACATAG TAACCTGTAT 72276 .......... .......... .......... .......... .......... .......... 248 CCAACAAAAT ATTTTGTTCT TGGTATTTGT TTGTGAAATT TACCTCCACG AGGTAGGGGT 72216 .......... .......... .......... .......... .......... .......... 248 GATGTCTGCA TACACTCTAC CTTAACCGAG ACCGCACATG TGGAATTTCA CTGTGCGTGT 72156 .......... .......... .......... .......... .......... .......... 248 TGTTCTTATT GTATTTGGTA GTAAACTTTT AAGATAGTAT CAACTACCTG TAAACTTTGC 72096 .......... .......... .......... .......... .......... .......... 248 TATTATTCAG AATGAGTTTG CTTCTCTTTT CCGACCAATT TGTGGAACTT ATGCAGTTTT 72036 |||| .......... .......... .......... .......... .......... ......TTTT 252 CAGATGGCTC CTCTGAGGTG GAGCTAAGAT TAGAACTTGG GCAGGGAGAT GTAACTCCTA 71976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGGCTC CTCTGAGGTG GAGCTAAGAT TAGAACTTGG GCAGGGAGAT GTAACTCCTA 312 AGGATATATA TGTAGATGCA AATGAGAGCT CATTAGCAAT TAGAGTACAG CAATCTGGAA 71916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATATA TGTAGATGCA AATGAGAGCT CATTAGCAAT TAGAGTACAG CAATCTGGAA 372 TTGTTCGGAC TCTCATGGAA ACCAGTACTC TGTATGAGAA AATAAAACCT GCAGAGACAA 71856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCGGAC TCTCATGGAA ACCAGTACTC TGTATGAGAA AATAAAACCT GCAGAGACAA 432 TATGGTAAAT GAAAACATAA TTTTAGTGAA TCTGTTTTAT CCTTTTGCAA CGTTTTATGA 71796 |||| TATG...... .......... .......... .......... .......... .......... 436 AACAAATCGT GTAGGTACAT AGATGAAGAT CAATTAGTAA TTAGCTTGAA GAAGCAAAAC 71736 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTACAT AGATGAAGAT CAATTAGTAA TTAGCTTGAA GAAGCAAAAC 482 TCCGAGTTGA AATGGCCTGA CATTGTGGAG TCTTGGGAGT CCCTAAGTGC TGG 71683 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||| TCCGAGTTGA AATGGCCTGA CATTGTGGAG TCTTGGGAGT TCCTAAGTGC TGG 535 hqPGS_C08HBa0320P23.1-_SGN-E296107+ (73235 72988,72039 71852,71781 71683) ******************************************************************************** EST sequence 101 +strand 397 n (File: SGN-E312275+) 1 CTCTTCTTCT TCTTCAGTGG CTCTCAGTTT TCTCTACGAA AACCCCATTA AAGCTTCACT 61 CTCAATTCCA AAAGCTCTTT CTCCTTACTC AAAACTCACA TTCCCATCTA TTGCGACCTT 121 TTATTCTGCA ATTCCCCGTT TCGATTACAG TAATTTCAGA AAAATCAATC CATGTCTTCA 181 TTGCAGCAAT CTTCCTACTG CTTCCACAAA TAACACGCAT TACGAGTTTT CAGATGGCTC 241 CTCTGAGGTG GAGCTAAGAT TAGAACTTGG GCAGGGAGAT GTAACTCCTA AGGATATATA 301 TGTAGATGCA AATGAGAGCT CATTAGCAAT TAGAGTACAG CAATCTGGAA TTGTTCGGAC 361 TCTCATGGAA ACCAGTACTC TGTATGAGAA AATAAAA Predicted gene structure (within gDNA segment 73813 to 71259): Exon 1 73213 72988 ( 226 n); cDNA 1 226 ( 226 n); score: 0.996 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71869 ( 171 n); cDNA 227 397 ( 171 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E312275+ 0.997 397 1.000 C PGS_C08HBa0320P23.1-_SGN-E312275+ (73213 72988,72039 71869) Alignment (genomic DNA sequence = upper lines): CTCTTCTTCT TCTTCAGTGG CTCTCAGTTT TCTCTACCAA AACCCCATTA AAGCTTCACT 73154 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CTCTTCTTCT TCTTCAGTGG CTCTCAGTTT TCTCTACGAA AACCCCATTA AAGCTTCACT 60 CTCAATTCCA AAAGCTCTTT CTCCTTACTC AAAACTCACA TTCCCATCTA TTGCGACCTT 73094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAATTCCA AAAGCTCTTT CTCCTTACTC AAAACTCACA TTCCCATCTA TTGCGACCTT 120 TTATTCTGCA ATTCCCCGTT TCGATTACAG TAATTTCAGA AAAATCAATC CATGTCTTCA 73034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTCTGCA ATTCCCCGTT TCGATTACAG TAATTTCAGA AAAATCAATC CATGTCTTCA 180 TTGCAGCAAT CTTCCTACTG CTTCCACAAA TAACACGCAT TACGAGGTAA TTTTTTATTT 72974 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGCAGCAAT CTTCCTACTG CTTCCACAAA TAACACGCAT TACGAG.... .......... 226 TTCATTTAAG TACATGAATA CTTTAATCAT AGACTCACTT GGCTGCTACG CAAAATTCAT 72914 .......... .......... .......... .......... .......... .......... 226 CTTCTTTTGG GGAAAACTGT ATTCTACTTT TTTGCCACTG ACATATGCAA CTTATCATTA 72854 .......... .......... .......... .......... .......... .......... 226 CGTTCAATCA AATAACAGAT TTGTTTAGTA ATTAACTTTC GTATATTTTG ATTAAATGTT 72794 .......... .......... .......... .......... .......... .......... 226 TTAAGTAGTA CAAACACATC TTTAAGTCTA ATTATTGTTA ACGTTTATTT GCAAATTCGA 72734 .......... .......... .......... .......... .......... .......... 226 GCTACCCAAA TGATGCATAT TATATGTGGA AATTGCATTA ATACATATTA TGTATTGTTT 72674 .......... .......... .......... .......... .......... .......... 226 CATAATGTAC TGTATTGTAT CATATTGTGT TGTTTAATGA ATACAATTGT ATTGATTGTA 72614 .......... .......... .......... .......... .......... .......... 226 TCGTTCTCCG TCGTTACATA ATGTCACACA TTCATAATTT TTTGATTGGT AAACCTACAA 72554 .......... .......... .......... .......... .......... .......... 226 GAAGTTGTAG GATACGGGCA GAGTCACTAT GAAAAGGTAG GGTACATGAT AAAAACAGAA 72494 .......... .......... .......... .......... .......... .......... 226 TTATTAGTAA ATAATAAGTA AGAGACAAAA TGAGAAGAAA ATACTAAGAT ACAAAATGGG 72434 .......... .......... .......... .......... .......... .......... 226 TCATTTCGTT GTTAACTAAC GATATGGATT TAAACGATAC AATACAATGG AATATAAGTA 72374 .......... .......... .......... .......... .......... .......... 226 ACAATCAAAA TAGATATTGT ACTTTAAATA ACAATACAAT GCAATACAAC GGGTAACAAC 72314 .......... .......... .......... .......... .......... .......... 226 CATCCAAACA AGGTGCAAGT CTACATAGTA ACCTGTATCC AACAAAATAT TTTGTTCTTG 72254 .......... .......... .......... .......... .......... .......... 226 GTATTTGTTT GTGAAATTTA CCTCCACGAG GTAGGGGTGA TGTCTGCATA CACTCTACCT 72194 .......... .......... .......... .......... .......... .......... 226 TAACCGAGAC CGCACATGTG GAATTTCACT GTGCGTGTTG TTCTTATTGT ATTTGGTAGT 72134 .......... .......... .......... .......... .......... .......... 226 AAACTTTTAA GATAGTATCA ACTACCTGTA AACTTTGCTA TTATTCAGAA TGAGTTTGCT 72074 .......... .......... .......... .......... .......... .......... 226 TCTCTTTTCC GACCAATTTG TGGAACTTAT GCAGTTTTCA GATGGCTCCT CTGAGGTGGA 72014 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTTTCA GATGGCTCCT CTGAGGTGGA 252 GCTAAGATTA GAACTTGGGC AGGGAGATGT AACTCCTAAG GATATATATG TAGATGCAAA 71954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAAGATTA GAACTTGGGC AGGGAGATGT AACTCCTAAG GATATATATG TAGATGCAAA 312 TGAGAGCTCA TTAGCAATTA GAGTACAGCA ATCTGGAATT GTTCGGACTC TCATGGAAAC 71894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAGCTCA TTAGCAATTA GAGTACAGCA ATCTGGAATT GTTCGGACTC TCATGGAAAC 372 CAGTACTCTG TATGAGAAAA TAAAA 71869 |||||||||| |||||||||| ||||| CAGTACTCTG TATGAGAAAA TAAAA 397 hqPGS_C08HBa0320P23.1-_SGN-E312275+ (73213 72988,72039 71869) ******************************************************************************** EST sequence 145 +strand 377 n (File: SGN-E299600+) 1 TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCGGCCAAA ACCCCATTAA 61 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 121 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 181 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGTTTTC 241 AGATGGCTCC TCTGAGGTGG AGCTAAGATT AGAACTTGGG CAGGGAGATG TAACTCCTAA 301 GGATATATAT GTAGATGCAA ATGAGAGCTC ATTAGCAATT AGAGTACAGC AATCTGGAAT 361 TGTTCGGACT CTCATGG Predicted gene structure (within gDNA segment 73903 to 71288): Exon 1 73222 72988 ( 235 n); cDNA 1 235 ( 235 n); score: 0.991 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71898 ( 142 n); cDNA 236 377 ( 142 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-E299600+ 0.995 377 1.000 C PGS_C08HBa0320P23.1-_SGN-E299600+ (73222 72988,72039 71898) Alignment (genomic DNA sequence = upper lines): TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCTACCAAA ACCCCATTAA 73163 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| TTCTTCTTCC TCTTCTTCTT CTTCAGTGGC TCTCAGTTTT CTCGGCCAAA ACCCCATTAA 60 AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 73103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCACTC TCAATTCCAA AAGCTCTTTC TCCTTACTCA AAACTCACAT TCCCATCTAT 120 TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 73043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGACCTTT TATTCTGCAA TTCCCCGTTT CGATTACAGT AATTTCAGAA AAATCAATCC 180 ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAGGTAAT 72983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATGTCTTCAT TGCAGCAATC TTCCTACTGC TTCCACAAAT AACACGCATT ACGAG..... 235 TTTTTATTTT TCATTTAAGT ACATGAATAC TTTAATCATA GACTCACTTG GCTGCTACGC 72923 .......... .......... .......... .......... .......... .......... 235 AAAATTCATC TTCTTTTGGG GAAAACTGTA TTCTACTTTT TTGCCACTGA CATATGCAAC 72863 .......... .......... .......... .......... .......... .......... 235 TTATCATTAC GTTCAATCAA ATAACAGATT TGTTTAGTAA TTAACTTTCG TATATTTTGA 72803 .......... .......... .......... .......... .......... .......... 235 TTAAATGTTT TAAGTAGTAC AAACACATCT TTAAGTCTAA TTATTGTTAA CGTTTATTTG 72743 .......... .......... .......... .......... .......... .......... 235 CAAATTCGAG CTACCCAAAT GATGCATATT ATATGTGGAA ATTGCATTAA TACATATTAT 72683 .......... .......... .......... .......... .......... .......... 235 GTATTGTTTC ATAATGTACT GTATTGTATC ATATTGTGTT GTTTAATGAA TACAATTGTA 72623 .......... .......... .......... .......... .......... .......... 235 TTGATTGTAT CGTTCTCCGT CGTTACATAA TGTCACACAT TCATAATTTT TTGATTGGTA 72563 .......... .......... .......... .......... .......... .......... 235 AACCTACAAG AAGTTGTAGG ATACGGGCAG AGTCACTATG AAAAGGTAGG GTACATGATA 72503 .......... .......... .......... .......... .......... .......... 235 AAAACAGAAT TATTAGTAAA TAATAAGTAA GAGACAAAAT GAGAAGAAAA TACTAAGATA 72443 .......... .......... .......... .......... .......... .......... 235 CAAAATGGGT CATTTCGTTG TTAACTAACG ATATGGATTT AAACGATACA ATACAATGGA 72383 .......... .......... .......... .......... .......... .......... 235 ATATAAGTAA CAATCAAAAT AGATATTGTA CTTTAAATAA CAATACAATG CAATACAACG 72323 .......... .......... .......... .......... .......... .......... 235 GGTAACAACC ATCCAAACAA GGTGCAAGTC TACATAGTAA CCTGTATCCA ACAAAATATT 72263 .......... .......... .......... .......... .......... .......... 235 TTGTTCTTGG TATTTGTTTG TGAAATTTAC CTCCACGAGG TAGGGGTGAT GTCTGCATAC 72203 .......... .......... .......... .......... .......... .......... 235 ACTCTACCTT AACCGAGACC GCACATGTGG AATTTCACTG TGCGTGTTGT TCTTATTGTA 72143 .......... .......... .......... .......... .......... .......... 235 TTTGGTAGTA AACTTTTAAG ATAGTATCAA CTACCTGTAA ACTTTGCTAT TATTCAGAAT 72083 .......... .......... .......... .......... .......... .......... 235 GAGTTTGCTT CTCTTTTCCG ACCAATTTGT GGAACTTATG CAGTTTTCAG ATGGCTCCTC 72023 ||||||| |||||||||| .......... .......... .......... .......... ...TTTTCAG ATGGCTCCTC 252 TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 71963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGGAG CTAAGATTAG AACTTGGGCA GGGAGATGTA ACTCCTAAGG ATATATATGT 312 AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 71903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCAAAT GAGAGCTCAT TAGCAATTAG AGTACAGCAA TCTGGAATTG TTCGGACTCT 372 CATGG 71898 ||||| CATGG 377 hqPGS_C08HBa0320P23.1-_SGN-E299600+ (73222 72988,72039 71898) ******************************************************************************** EST sequence 75 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 75643 to 69045): Exon 1 74044 73863 ( 182 n); cDNA 1 186 ( 186 n); score: 0.857 Intron 1 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 2 73830 73489 ( 342 n); cDNA 187 505 ( 319 n); score: 0.763 Intron 2 73488 73457 ( 32 n); Pd: 0.000 (s: 0.62), Pa: 0.513 (s: 0) Exon 3 73456 73427 ( 30 n); cDNA 506 533 ( 28 n); score: 0.667 Intron 3 73426 73250 ( 177 n); Pd: 0.000 (s: 0), Pa: 0.750 (s: 0) Exon 4 73249 73228 ( 22 n); cDNA 534 554 ( 21 n); score: 0.636 Intron 4 73227 72086 (1142 n); Pd: 0.382 (s: 0), Pa: 0.440 (s: 0) Exon 5 72085 72073 ( 13 n); cDNA 555 567 ( 13 n); score: 0.615 MATCH C08HBa0320P23.1- SGN-E379618+ 0.796 589 1.033 C PGS_C08HBa0320P23.1-_SGN-E379618+ (74044 73863,73830 73489,73456 73427,73249 73228,72085 72073) Alignment (genomic DNA sequence = upper lines): AAAATGTTTG TATATTGTAT AATTATAAGT GTATAGGAAG AAGATATATG TTTTTCTCTC 73985 ||||||| || ||||||| || |||||||||| |||| | ||| || ||||||| ||||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATTTAT ACACTTTTGT TATATAAAGC AAGAGAAAAT 73925 |||||||||| |||||| ||| |||||| ||| |||||| ||| | ||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTCAC TGCAATTGTA TAATTCACAA TTG--T-ATT CGCTGGCC-T TTTCGCTGCA 73869 |||||||||| ||||||| || |||||||||| ||| | ||| || ||||| | |||| ||||| TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 180 GTATTTGTAT AAAATTTACA TTTGTATACA ATTGAATCGA AGTAAAATAT TTGTAAATTG 73809 ||||| || |||||||| | |||||| ||| ATATTT.... .......... .......... ........GA AGTAAAATGT TTGTAATTTG 208 TATAATTAAG TGCATTGCAC AAAAATATAT GTTTTTGCAT GTGTATATAC AATTTTTTCT 73749 |||||||||| || || ||| || |||||| ||||| ||| |||||||||| |||||| ||| TATAATTAAG TGTATAACAC GAAGATATAT ATTTTTACAT GTGTATATAC AATTTTCTCT 268 CGCTTTATAC AAAACAGAAA CACAATTTAT AGACTTCTGT TGTATAAAGC GAGAGAGGCG 73689 |||||||||| |||| ||||| || ||||||| | ||||||| |||||| ||| |||| CGCTTTATAC AAAATAGAAA CAGAATTTAT ACACTTCTG- TGTATATAGC --GAGA---- 321 GGTAGAGGGA GAGTGGCGAG CGAGAATAGT AGAATGGCCA GCAAGAGTTT TGGGAGAGAG 73629 | | |||||| ||||||| | ||| |||| | || ||| ||| |||||| ||| --T------- -A--GGCGAG CGAGAAT-GG AGAGTGGCGA GCGAGATTTT TGGGAGGGAG 368 GTGACTGGCA AACTTTGACA AACGTTTGCT ATGAGACATA ATTAAATCAA ACAGTAGTTA 73569 | ||| || |||||| | |||||||||| ||| || | |||||||||| || ||| || ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACTCTAGCTA 428 TTTCATTTAT TTTAGGTTAT TAATTTACTA TTATATACAA TTATTTCTAA AATAAATATT 73509 | |||||| |||| ||| || ||| ||| |||||||||| || || | || | | | CTCCATTTA- GTTAGATTAC TAGTTTGCTA TTATATACAA TT-TTCCCAA GA-GCTTGTA 485 TCAAATTCTT AAAAATAAAA TTATAATAAT AAAAATAATG TTATTCTTTT AGAGATGGAG 73449 | | || | || |||| |||| || TAANATGGAG AGAAGGAAAA .......... .......... .......... ..AGATTTAG 513 AATAATATTA CATGTAAAGT ACATGGAAAT TGTGATAATT TTGTTCACGA TATAGCTCAA 73389 ||| ||| | ||| || || AAT--TATCG CTTGTGAATG AC........ .......... .......... .......... 533 AAAATACATC GTGCAAGAAT TTAAAATTTT GAAAGTAGTT CAAATTAACG GGAGCTATTT 73329 .......... .......... .......... .......... .......... .......... 533 GTAATTTTAT CAAACTAAGG GGAGCTATAT GCAAATTCTT TAAAAGCCTA TATTTCTTAT 73269 .......... .......... .......... .......... .......... .......... 533 CTGCTCCATT TTTTCTCAGA AGAAACAGAG AAGCAAACAT GGCTTCTTCT TCTTCCTCTT 73209 | ||||| ||| ||| | | .......... .........A AGAAA-AGAT TGCAAAATAA G......... .......... 554 CTTCTTCTTC AGTGGCTCTC AGTTTTCTCT ACCAAAACCC CATTAAAGCT TCACTCTCAA 73149 .......... .......... .......... .......... .......... .......... 554 TTCCAAAAGC TCTTTCTCCT TACTCAAAAC TCACATTCCC ATCTATTGCG ACCTTTTATT 73089 .......... .......... .......... .......... .......... .......... 554 CTGCAATTCC CCGTTTCGAT TACAGTAATT TCAGAAAAAT CAATCCATGT CTTCATTGCA 73029 .......... .......... .......... .......... .......... .......... 554 GCAATCTTCC TACTGCTTCC ACAAATAACA CGCATTACGA GGTAATTTTT TATTTTTCAT 72969 .......... .......... .......... .......... .......... .......... 554 TTAAGTACAT GAATACTTTA ATCATAGACT CACTTGGCTG CTACGCAAAA TTCATCTTCT 72909 .......... .......... .......... .......... .......... .......... 554 TTTGGGGAAA ACTGTATTCT ACTTTTTTGC CACTGACATA TGCAACTTAT CATTACGTTC 72849 .......... .......... .......... .......... .......... .......... 554 AATCAAATAA CAGATTTGTT TAGTAATTAA CTTTCGTATA TTTTGATTAA ATGTTTTAAG 72789 .......... .......... .......... .......... .......... .......... 554 TAGTACAAAC ACATCTTTAA GTCTAATTAT TGTTAACGTT TATTTGCAAA TTCGAGCTAC 72729 .......... .......... .......... .......... .......... .......... 554 CCAAATGATG CATATTATAT GTGGAAATTG CATTAATACA TATTATGTAT TGTTTCATAA 72669 .......... .......... .......... .......... .......... .......... 554 TGTACTGTAT TGTATCATAT TGTGTTGTTT AATGAATACA ATTGTATTGA TTGTATCGTT 72609 .......... .......... .......... .......... .......... .......... 554 CTCCGTCGTT ACATAATGTC ACACATTCAT AATTTTTTGA TTGGTAAACC TACAAGAAGT 72549 .......... .......... .......... .......... .......... .......... 554 TGTAGGATAC GGGCAGAGTC ACTATGAAAA GGTAGGGTAC ATGATAAAAA CAGAATTATT 72489 .......... .......... .......... .......... .......... .......... 554 AGTAAATAAT AAGTAAGAGA CAAAATGAGA AGAAAATACT AAGATACAAA ATGGGTCATT 72429 .......... .......... .......... .......... .......... .......... 554 TCGTTGTTAA CTAACGATAT GGATTTAAAC GATACAATAC AATGGAATAT AAGTAACAAT 72369 .......... .......... .......... .......... .......... .......... 554 CAAAATAGAT ATTGTACTTT AAATAACAAT ACAATGCAAT ACAACGGGTA ACAACCATCC 72309 .......... .......... .......... .......... .......... .......... 554 AAACAAGGTG CAAGTCTACA TAGTAACCTG TATCCAACAA AATATTTTGT TCTTGGTATT 72249 .......... .......... .......... .......... .......... .......... 554 TGTTTGTGAA ATTTACCTCC ACGAGGTAGG GGTGATGTCT GCATACACTC TACCTTAACC 72189 .......... .......... .......... .......... .......... .......... 554 GAGACCGCAC ATGTGGAATT TCACTGTGCG TGTTGTTCTT ATTGTATTTG GTAGTAAACT 72129 .......... .......... .......... .......... .......... .......... 554 TTTAAGATAG TATCAACTAC CTGTAAACTT TGCTATTATT CAGAATGAGT TTGCTT 72073 ||| ||| || .......... .......... .......... .......... ...AATTTAG TTGTTT 567 hqPGS_C08HBa0320P23.1-_SGN-E379618+ (74044 73863,73830 73489,73456 73427,73249 73228) ******************************************************************************** EST sequence 133 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 75653 to 69835): Exon 1 74045 73863 ( 183 n); cDNA 1 187 ( 187 n); score: 0.858 Intron 1 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 2 73830 73510 ( 321 n); cDNA 188 487 ( 300 n); score: 0.776 Intron 2 73509 73250 ( 260 n); Pd: 0.000 (s: 0.68), Pa: 0.750 (s: 0) Exon 3 73249 73232 ( 18 n); cDNA 488 505 ( 18 n); score: 0.722 MATCH C08HBa0320P23.1- SGN-E394609+ 0.806 522 0.853 C PGS_C08HBa0320P23.1-_SGN-E394609+ (74045 73863,73830 73510,73249 73232) Alignment (genomic DNA sequence = upper lines): TAAAATGTTT GTATATTGTA TAATTATAAG TGTATAGGAA GAAGATATAT GTTTTTCTCT 73986 |||||||| | |||||||| | |||||||||| ||||| | || ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATTTA TACACTTTTG TTATATAAAG CAAGAGAAAA 73926 |||||||||| ||||||| || ||||||| || ||||||| || || ||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTCA CTGCAATTGT ATAATTCACA ATTG--T-AT TCGCTGGCC- TTTTCGCTGC 73870 |||||||||| |||||||| | |||||||||| |||| | || ||| ||||| ||||| |||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AGTATTTGTA TAAAATTTAC ATTTGTATAC AATTGAATCG AAGTAAAATA TTTGTAAATT 73810 | ||||| | ||||||||| ||||||| || AATATTT... .......... .......... .........G AAGTAAAATG TTTGTAATTT 208 GTATAATTAA GTGCATTGCA CAAAAATATA TGTTTTTGCA TGTGTATATA CAATTTTTTC 73750 |||||||||| ||| || || | || ||||| | ||||| || |||||||||| ||||||| || GTATAATTAA GTGTATAACA CGAAGATATA TATTTTTACA TGTGTATATA CAATTTTCTC 268 TCGCTTTATA CAAAACAGAA ACACAATTTA TAGACTTCTG TTGTATAAAG CGAGAGAGGC 73690 |||||||||| ||||| |||| ||| |||||| || ||||||| |||||| || | |||| TCGCTTTATA CAAAATAGAA ACAGAATTTA TACACTTCTG -TGTATATAG C--GAGA--- 322 GGGTAGAGGG AGAGTGGCGA GCGAGAATAG TAGAATGGCC AGCAAGAGTT TTGGGAGAGA 73630 | | ||||| |||||||| | ||| |||| ||| ||| || ||||||| || ---T------ --A--GGCGA GCGAGAAT-G GAGAGTGGCG AGCGAGATTT TTGGGAGGGA 368 GGTGACTGGC AAACTTTGAC AAACGTTTGC TATGAGACAT AATTAAATCA AACAGTAGTT 73570 | | ||| | ||||||| | ||||||||| |||| || |||||||||| ||| ||| | GACGCCTGAC AAACTTTAGC TAACGTTTGC TATGGAGCAC AATTAAATCA AACTCTAGCT 428 ATTTCATTTA TTTTAGGTTA TTAATTTACT ATTATATACA ATTATTTCTA AAATAAATAT 73510 | | |||||| |||| ||| || ||| || |||||||||| ||| | | | | ||| ACTCCATTTA -GTTAGATTA CTAGTTTGCT ATTATATACA ATTTTCCCAA GAGCTTGTAT 487 TTCAAATTCT TAAAAATAAA ATTATAATAA TAAAAATAAT GTTATTCTTT TAGAGATGGA 73450 .......... .......... .......... .......... .......... .......... 487 GAATAATATT ACATGTAAAG TACATGGAAA TTGTGATAAT TTTGTTCACG ATATAGCTCA 73390 .......... .......... .......... .......... .......... .......... 487 AAAAATACAT CGTGCAAGAA TTTAAAATTT TGAAAGTAGT TCAAATTAAC GGGAGCTATT 73330 .......... .......... .......... .......... .......... .......... 487 TGTAATTTTA TCAAACTAAG GGGAGCTATA TGCAAATTCT TTAAAAGCCT ATATTTCTTA 73270 .......... .......... .......... .......... .......... .......... 487 TCTGCTCCAT TTTTTCTCAG AAGAAACAGA GAAGCAAA 73232 || | ||| |||| ||| .......... .......... AAAATGGAGA GAAGGAAA 505 hqPGS_C08HBa0320P23.1-_SGN-E394609+ (74045 73863,73830 73510,73249 73232) ******************************************************************************** EST sequence 152 +strand 450 n (File: SGN-E200845+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG Predicted gene structure (within gDNA segment 75643 to 71445): Exon 1 74044 73863 ( 182 n); cDNA 1 186 ( 186 n); score: 0.857 Intron 1 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 2 73830 73664 ( 167 n); cDNA 187 354 ( 168 n); score: 0.856 MATCH C08HBa0320P23.1- SGN-E200845+ 0.857 349 0.776 C PGS_C08HBa0320P23.1-_SGN-E200845+ (74044 73863,73830 73664) Alignment (genomic DNA sequence = upper lines): AAAATGTTTG TATATTGTAT AATTATAAGT GTATAGGAAG AAGATATATG TTTTTCTCTC 73985 ||||||| || ||||||| || |||||||||| |||| | ||| || ||||||| ||||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATTTAT ACACTTTTGT TATATAAAGC AAGAGAAAAT 73925 |||||||||| |||||| ||| |||||| ||| |||||| ||| | ||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTCAC TGCAATTGTA TAATTCACAA TTG--T-ATT CGCTGGCC-T TTTCGCTGCA 73869 |||||||||| ||||||| || |||||||||| ||| | ||| || ||||| | |||| ||||| TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 180 GTATTTGTAT AAAATTTACA TTTGTATACA ATTGAATCGA AGTAAAATAT TTGTAAATTG 73809 ||||| || |||||||| | |||||| ||| ATATTT.... .......... .......... ........GA AGTAAAATGT TTGTAATTTG 208 TATAATTAAG TGCATTGCAC AAAAATATAT GTTTTTGCAT GTGTATATAC AATTTTTTCT 73749 |||||||||| || || ||| || |||||| ||||| ||| |||||||||| |||||| ||| TATAATTAAG TGTATAACAC GAAGATATAT ATTTTTACAT GTGTATATAC AATTTTCTCT 268 CGCTTTATAC AAAACAGAAA CACAATTTAT AGACTTCTGT TGTATAAAGC GAGAGAGGCG 73689 |||||||||| |||| ||||| || ||||||| | ||||||| |||||| ||| |||| ||||| CGCTTTATAC AAAATAGAAA CAGAATTTAT ACACTTCTG- TGTATATAGC GAGATAGGCG 327 -GGTAG-AGG GAGAGTGGCG AGCGAGA 73664 | || | | |||||||||| ||||||| AGCGAGAATG GAGAGTGGCG AGCGAGA 354 hqPGS_C08HBa0320P23.1-_SGN-E200845+ (74044 73863,73830 73664) ******************************************************************************** EST sequence 115 +strand 325 n (File: SGN-E393076+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 301 TTTTTTTGTG TATATAGCGA GATAG Predicted gene structure (within gDNA segment 75653 to 72705): Exon 1 74045 73863 ( 183 n); cDNA 1 187 ( 187 n); score: 0.858 Intron 1 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 2 73830 73692 ( 139 n); cDNA 188 325 ( 138 n); score: 0.849 MATCH C08HBa0320P23.1- SGN-E393076+ 0.854 322 0.991 C PGS_C08HBa0320P23.1-_SGN-E393076+ (74045 73863,73830 73692) Alignment (genomic DNA sequence = upper lines): TAAAATGTTT GTATATTGTA TAATTATAAG TGTATAGGAA GAAGATATAT GTTTTTCTCT 73986 |||||||| | |||||||| | |||||||||| ||||| | || ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATTTA TACACTTTTG TTATATAAAG CAAGAGAAAA 73926 |||||||||| ||||||| || ||||||| || ||||||| || || ||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTCA CTGCAATTGT ATAATTCACA ATTG--T-AT TCGCTGGCC- TTTTCGCTGC 73870 |||||||||| |||||||| | |||||||||| |||| | || ||| ||||| ||||| |||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AGTATTTGTA TAAAATTTAC ATTTGTATAC AATTGAATCG AAGTAAAATA TTTGTAAATT 73810 | ||||| | ||||||||| ||||||| || AATATTT... .......... .......... .........G AAGTAAAATG TTTGTAATTT 208 GTATAATTAA GTGCATTGCA CAAAAATATA TGTTTTTGCA TGTGTATATA CAATTTTTTC 73750 |||||||||| ||| || || | || ||||| | ||||| || |||||||||| ||||||| || GTATAATTAA GTGTATAACA CGAAGATATA TATTTTTACA TGTGTATATA CAATTTTCTC 268 TCGCTTTATA CAAAACAGAA ACACAATTTA TAGACTTCTG TTGTATAAAG CGAGAGAG 73692 |||||||||| ||||| | || ||| |||||| | || || |||||| || ||||| || TCGCTTTATA CAAAATAAAA ACAGAATTTA TTTTTTTTTG -TGTATATAG CGAGATAG 325 hqPGS_C08HBa0320P23.1-_SGN-E393076+ (74045 73863,73830 73692) ******************************************************************************** EST sequence 114 +strand 308 n (File: SGN-E393075+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 301 TTTTTTTT Predicted gene structure (within gDNA segment 75653 to 72875): Exon 1 74045 73863 ( 183 n); cDNA 1 187 ( 187 n); score: 0.858 Intron 1 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 2 73830 73713 ( 118 n); cDNA 188 305 ( 118 n); score: 0.839 MATCH C08HBa0320P23.1- SGN-E393075+ 0.850 301 0.977 C PGS_C08HBa0320P23.1-_SGN-E393075+ (74045 73863,73830 73713) Alignment (genomic DNA sequence = upper lines): TAAAATGTTT GTATATTGTA TAATTATAAG TGTATAGGAA GAAGATATAT GTTTTTCTCT 73986 |||||||| | |||||||| | |||||||||| ||||| | || ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATTTA TACACTTTTG TTATATAAAG CAAGAGAAAA 73926 |||||||||| ||||||| || ||||||| || ||||||| || || ||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTCA CTGCAATTGT ATAATTCACA ATTG--T-AT TCGCTGGCC- TTTTCGCTGC 73870 |||||||||| |||||||| | |||||||||| |||| | || ||| ||||| ||||| |||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AGTATTTGTA TAAAATTTAC ATTTGTATAC AATTGAATCG AAGTAAAATA TTTGTAAATT 73810 | ||||| | ||||||||| ||||||| || AATATTT... .......... .......... .........G AAGTAAAATG TTTGTAATTT 208 GTATAATTAA GTGCATTGCA CAAAAATATA TGTTTTTGCA TGTGTATATA CAATTTTTTC 73750 |||||||||| ||| || || | || ||||| | ||||| || |||||||||| ||||||| || GTATAATTAA GTGTATAACA CGAAGATATA TATTTTTACA TGTGTATATA CAATTTTCTC 268 TCGCTTTATA CAAAACAGAA ACACAATTTA TAGACTT 73713 |||||||||| ||||| |||| ||| | || | || TCGCTTTATA CAAAATAGAA ACAGAGGTTT TTTTTTT 305 hqPGS_C08HBa0320P23.1-_SGN-E393075+ (74045 73863,73830 73713) ******************************************************************************** EST sequence 64 -strand 666 n (File: SGN-E371327-) 1 AGGGTTGTGT TGACTCAAAT TCCAAGGGTG TGGATAGTGT ACATGGTTCA AGTGATGCTG 61 TTGAAGCTGC TAAGTCCATC GCTCAACAAA GTGGTAGTGT AGTCGCTGTT TCTGGAGCTG 121 TTGACTATAT CACAGACGGT GATAGGGTTG TTTGTGTTCA CAATGGGGTG CCTATGTTGC 181 AAAAGATTAC TGCATCTGGA TGTTCAGTCA CTGCCCTCAT TGCTGCCTTT GTCGCTGTTG 241 ATCCATCCCA TGCTGTGGAA GCAACAGCTT CTGCATTGGC TATATTTGGT GTCGCAAGTG 301 AAACAGGGAT GGACATGGCT AGAGGTCCAG CTTCACTGCG GACACTGTTG ATTGATTCGT 361 TATATGGACT TGGGGAAGCT ACTGCACTTA GTCGAGTAAG AATCAACCAC CTTTAATGCT 421 TTTAGACGAG AAATCAATGT GTCCATTTCA TTTAAATCTA ACTCTCATTT ATTTTTGGGC 481 AACTTTTTTC ACATACAGCA AACAAAAAAT TCATATTTGT ATGCTATAGC AAACTTCGCA 541 TAATTGCGTT CCATAGCAAA CATAAAATTG TATAATTCGC TATACATATA CAATTGTATA 601 ATTCGCTATC CTATTTCACT GCAATTGTAT AATGCACAAT TGTATAATTC GCTGCCTAAA 661 AAAAAA Predicted gene structure (within gDNA segment 80576 to 73337): Exon 1 74318 74224 ( 95 n); cDNA 486 580 ( 95 n); score: 0.842 Intron 1 74223 74176 ( 48 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.90) Exon 2 74175 74097 ( 79 n); cDNA 581 658 ( 78 n); score: 0.899 Intron 2 74096 73732 ( 365 n); Pd: 0.000 (s: 0.92), Pa: 0.938 (s: 0) Exon 3 73731 73724 ( 8 n); cDNA 659 666 ( 8 n); score: 0.750 MATCH C08HBa0320P23.1- SGN-E371327- 0.868 182 0.273 C PGS_C08HBa0320P23.1-_SGN-E371327- (74318 74224,74175 74097,73731 73724) Alignment (genomic DNA sequence = upper lines): TTTTCACATA TAACAAACAA AAATATTATA TTTATATGTT ATAACAAAGT TTGCATAATT 74259 |||||||||| | ||||||| ||| | ||| ||| |||| | ||| |||| | | |||||||| TTTTCACATA CAGCAAACAA AAAATTCATA TTTGTATGCT ATAGCAAACT TCGCATAATT 545 GCACTCTATA GCAAACATAT AAATGTATAA TTCGCACAAT TGTATAATTC GCTGGCCCAA 74199 || || ||| ||||||||| || ||||||| ||||| GCGTTCCATA GCAAACATAA AATTGTATAA TTCGC..... .......... .......... 580 ATTATATAAT TCGCTGGTCT CACTATACAT ATACAATTGT ATGATTTGCT GGCTTATTTC 74139 ||||||| |||||||||| || ||| ||| | |||||| .......... .......... ...TATACAT ATACAATTGT ATAATTCGCT ATCCTATTTC 617 ACTGCAATTG TATAATGCAC AATTGTATAA TTTACTGACC TATTTCGCTG CAGTATTTAT 74079 |||||||||| |||||||||| |||||||||| || ||| || || ACTGCAATTG TATAATGCAC AATTGTATAA TTCGCTG-CC TA........ .......... 658 ATAAAATTTG TTTCGCATAC AATTGAATCG AAGTAAAATG TTTGTATATT GTATAATTAT 74019 .......... .......... .......... .......... .......... .......... 658 AAGTGTATAG GAAGAAGATA TATGTTTTTC TCTCGCTTTA TACAAAAACA GAAACACAAT 73959 .......... .......... .......... .......... .......... .......... 658 TTATACACTT TTGTTATATA AAGCAAGAGA AAATTGTATT TCACTGCAAT TGTATAATTC 73899 .......... .......... .......... .......... .......... .......... 658 ACAATTGTAT TCGCTGGCCT TTTCGCTGCA GTATTTGTAT AAAATTTACA TTTGTATACA 73839 .......... .......... .......... .......... .......... .......... 658 ATTGAATCGA AGTAAAATAT TTGTAAATTG TATAATTAAG TGCATTGCAC AAAAATATAT 73779 .......... .......... .......... .......... .......... .......... 658 GTTTTTGCAT GTGTATATAC AATTTTTTCT CGCTTTATAC AAAACAGAAA CACAA 73724 ||| | || .......... .......... .......... .......... .......AAA AAAAA 666 hqPGS_C08HBa0320P23.1-_SGN-E371327- (74318 74224,74175 74097) ******************************************************************************** EST sequence 9 +strand 481 n (File: SGN-E202721+) 1 GCACGAGCTC GTGCCGAATT CGGCACGAGA ATTTTCTCAA AAATAATCCA TCTTCTAGTG 61 TATATACATA TCATATAGCT AAAAAAAAAA AAACAACTAG CCAAAATAAA GAAAACCTAG 121 AGAGCAACAA AGAGGAGAAG AAGAAAAAGG GGTGGAGAGA AAAAAAAAAT TGAATCTAGG 181 TATGTACTAA AATTTTTTTT TTTCAGACTC TCGAAATTTG AACAGTGCCA CGTAGAAAGA 241 AGTAACAAGG ATATATGGAA CTATTCCCAG CACAACCAGA CTTATCCCTA AAAATTAGCC 301 CACCAAACAT GAAACCTTCA TCATCAACAT GGAAGAGGAA AATTACAAGT GAAGATGATA 361 TTCATATGGA TTTAGGGTTT TGTAAAAGAG CTCATGTGGT GGAATCAACA AATCCTATTA 421 ACACTTCTTC TTCTTCTTGT TTTGACCTTT CTTTATCCAA TAATCCAACT AAACCTAACC 481 C Predicted gene structure (within gDNA segment 76387 to 78338): Exon 1 77277 77728 ( 452 n); cDNA 30 481 ( 452 n); score: 0.998 MATCH C08HBa0320P23.1+ SGN-E202721+ 0.998 452 0.940 C PGS_C08HBa0320P23.1+_SGN-E202721+ (77277 77728) Alignment (genomic DNA sequence = upper lines): AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 77336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 89 AAAACAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 77396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 149 GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 77456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 209 CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 77516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 269 GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TCAAACCTTC ATCATCAACA 77576 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TGAAACCTTC ATCATCAACA 329 TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 77636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 389 GCTCATGTGG TGGAATCAAC AAATCCTATT AACACTTCTT CTTCTTCTTG TTTTGACCTT 77696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCATGTGG TGGAATCAAC AAATCCTATT AACACTTCTT CTTCTTCTTG TTTTGACCTT 449 TCTTTATCCA ATAATCCAAC TAAACCTAAC CC 77728 |||||||||| |||||||||| |||||||||| || TCTTTATCCA ATAATCCAAC TAAACCTAAC CC 481 hqPGS_C08HBa0320P23.1+_SGN-E202721+ (77277 77728) ******************************************************************************** EST sequence 12 +strand 424 n (File: SGN-E281398+) 1 GCACGAGCTC GTGCCGAATT CGGCACGAGA ATTTTCTCAA AAATAATCCA TCTTCTAGTG 61 TATATACATA TCATATAGCT AAAAAAAAAA CCCCAACTAG CCAAAATAAA GAAAACCTAG 121 AGAGCAACAA AGAGGAGAAG AAGAAAAAGG GGTGGAGAGA AAAAAAAAAT TGAATCTAGG 181 TATGTACTAA AATTTTTTTT TTTCAGACTC TCGAAATTTG AACAGTGCCA CGTAGAAAGA 241 AGTAACAAGG ATATATGGAA CTATTCCCAG CACAACCAGA CTTATCCCTA AAAATTAGCC 301 CACCAAACAT CAAACCTTCA TCATCAACAT GGAAGAGGAA AATTACAAGT GAAGATGATA 361 TTCATATGGA TTTAGGGTTT TGTAAAAGAG CTCATGTGGT GGAATCAACA AATCCTATTA 421 ACAC Predicted gene structure (within gDNA segment 76387 to 78281): Exon 1 77277 77671 ( 395 n); cDNA 30 424 ( 395 n); score: 0.992 MATCH C08HBa0320P23.1+ SGN-E281398+ 0.992 395 0.932 C PGS_C08HBa0320P23.1+_SGN-E281398+ (77277 77671) Alignment (genomic DNA sequence = upper lines): AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 77336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 89 AAAACAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 77396 | |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 149 GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 77456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 209 CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 77516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 269 GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TCAAACCTTC ATCATCAACA 77576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TCAAACCTTC ATCATCAACA 329 TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 77636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 389 GCTCATGTGG TGGAATCAAC AAATCCTATT AACAC 77671 |||||||||| |||||||||| |||||||||| ||||| GCTCATGTGG TGGAATCAAC AAATCCTATT AACAC 424 hqPGS_C08HBa0320P23.1+_SGN-E281398+ (77277 77671) ******************************************************************************** EST sequence 25 +strand 510 n (File: SGN-E555338+) 1 GATTAATTCT CAAGATGTAT CGGACTGTAA AGACAACTGA TAGATCAGCT TCTTCAGGCC 61 AATCTGAAGT ATTCGACAAT TTGTCAACTG GAGATACATC AGAGGAATTG ATGGTTGATG 121 AATATTTTGA TCCAAAGTCT AAATTGATAT AATAGATGAA TTTAGTTGAC ACTCAGAGAC 181 TCTAAATCCT GCATCTGCCT CTGATCGAAA ATGAAGAATG TTCAAGAAAG TTTGTTCAAC 241 AAGATGAAAG GAATATTCAT GGTGAACTTT TATATGCTAT TATAAATCTT CATGGTGAAA 301 TTTCATATGC TATTATAAAA AATTATTCCC AAAAAAATGA ATTTGTATTT CTTTTATAGC 361 CAAAAGGGTC TTAGGGTGAA TGCTAAACCC TAGTAAATAA TGATGGACCT ATATTTGTGG 421 AAATTAGTTT TTGTGCCAAA AGCAAAGAGG GCACTAGTTG TTCGACAGTG TAAAGAATTT 481 TTATAATATT GTGATTGAAA TGTTATTTAA Predicted gene structure (within gDNA segment 79595 to 81564): Exon 1 80317 80359 ( 43 n); cDNA 15 57 ( 43 n); score: 1.000 Intron 1 80360 80501 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.989 (s: 0.98) Exon 2 80502 80954 ( 453 n); cDNA 58 510 ( 453 n); score: 0.998 MATCH C08HBa0320P23.1+ SGN-E555338+ 0.998 496 0.973 C PGS_C08HBa0320P23.1+_SGN-E555338+ (80317 80359,80502 80954) Alignment (genomic DNA sequence = upper lines): ATGTATCGGA CTGTAAAGAC AACTGATAGA TCAGCTTCTT CAGGTTAATT ATTCACCTCT 80376 |||||||||| |||||||||| |||||||||| |||||||||| ||| ATGTATCGGA CTGTAAAGAC AACTGATAGA TCAGCTTCTT CAG....... .......... 57 TAGCATATGA TTAAATTATT ATTGTAGCTA TTTAATTCTC TAAAAAAAAA TTGAGTCCTT 80436 .......... .......... .......... .......... .......... .......... 57 ATTAACTTTT TGTTATGTCA AGAACCAAAT TTTAATTTTA ATTTTTTTCA TTGAATATAT 80496 .......... .......... .......... .......... .......... .......... 57 TTTAGGCCAA TCTGAAGTAT TCGACAATTT GTCATCTGGA GATACATCAG AGGAATTGAT 80556 ||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| .....GCCAA TCTGAAGTAT TCGACAATTT GTCAACTGGA GATACATCAG AGGAATTGAT 112 GGTTGATGAA TATTTTGATC CAAAGTCTAA ATTGATATAA TAGATGAATT TAGTTGACAC 80616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGATGAA TATTTTGATC CAAAGTCTAA ATTGATATAA TAGATGAATT TAGTTGACAC 172 TCAGAGACTC TAAATCCTGC ATCTGCCTCT GATCGAAAAT GAAGAATGTT CAAGAAAGTT 80676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGACTC TAAATCCTGC ATCTGCCTCT GATCGAAAAT GAAGAATGTT CAAGAAAGTT 232 TGTTCAACAA GATGAAAGGA ATATTCATGG TGAACTTTTA TATGCTATTA TAAATCTTCA 80736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCAACAA GATGAAAGGA ATATTCATGG TGAACTTTTA TATGCTATTA TAAATCTTCA 292 TGGTGAAATT TCATATGCTA TTATAAAAAA TTATTCCCAA AAAAATGAAT TTGTATTTCT 80796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAAATT TCATATGCTA TTATAAAAAA TTATTCCCAA AAAAATGAAT TTGTATTTCT 352 TTTATAGCCA AAAGGGTCTT AGGGTGAATG CTAAACCCTA GTAAATAATG ATGGACCTAT 80856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATAGCCA AAAGGGTCTT AGGGTGAATG CTAAACCCTA GTAAATAATG ATGGACCTAT 412 ATTTGTGGAA ATTAGTTTTT GTGCCAAAAG CAAAGAGGGC ACTAGTTGTT CGACAGTGTA 80916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTGGAA ATTAGTTTTT GTGCCAAAAG CAAAGAGGGC ACTAGTTGTT CGACAGTGTA 472 AAGAATTTTT ATAATATTGT GATTGAAATG TTATTTAA 80954 |||||||||| |||||||||| |||||||||| |||||||| AAGAATTTTT ATAATATTGT GATTGAAATG TTATTTAA 510 hqPGS_C08HBa0320P23.1+_SGN-E555338+ (80317 80359,80502 80954) ******************************************************************************** EST sequence 95 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 82383 to 88562): Exon 1 83453 83458 ( 6 n); cDNA 447 452 ( 6 n); score: 0.833 Intron 1 83459 88105 (4647 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 88106 88403 ( 298 n); cDNA 453 749 ( 297 n); score: 0.794 PPA cDNA 847 858 MATCH C08HBa0320P23.1+ SGN-E540411- 0.794 304 0.354 C PGS_C08HBa0320P23.1+_SGN-E540411- (83453 83458,88106 88403) Alignment (genomic DNA sequence = upper lines): AATGGCATAG CCTTCTAAAG GTGGGTGTAT GTGGCACATT TTAGAGCAAA TTAAAACTAA 83512 |||| | AATGTC.... .......... .......... .......... .......... .......... 452 TTAAGTGAAG CACCAAAAGG ACTTTTAAAC TTAATGTATA TCTTGTTCTT TGGTATATAC 83572 .......... .......... .......... .......... .......... .......... 452 TAAAAGTGGA AGGCTTTAAC CTTTTATCAA TAATTGTTAT CATCATGAGT CCATGACTCT 83632 .......... .......... .......... .......... .......... .......... 452 CATCTCATCC ACTAATTAAG TGGTGGAAGA AAAATGAAAG AATATGATAG TTCAGTTAAT 83692 .......... .......... .......... .......... .......... .......... 452 TGACTATTTA AATTTTTGTT TTATTATTAA AAATTCGATG TTCCATTTTA AAATGTTAAT 83752 .......... .......... .......... .......... .......... .......... 452 CTAGCCTTCT CCATTTGTAC AGAAAAATTT ATGTAGGAAG GAAAATAGAG GGTAAGAGTG 83812 .......... .......... .......... .......... .......... .......... 452 ATTTCCCCTT TCTCTTTTTT CCCTCATTTC AAGTGCAAAG TAGTCAAATA GAGGTTTTGT 83872 .......... .......... .......... .......... .......... .......... 452 ACTCCTCACT CACCGTAAAA AAAACAATTT AGCAGCAATA AATATAGATA TTAATAAATA 83932 .......... .......... .......... .......... .......... .......... 452 GTGCTAAAGT GTTACCGACA TTAGTTAAGT GTCATTAGAA TCAATATCAC TAAGGGACAT 83992 .......... .......... .......... .......... .......... .......... 452 ATATATAAAA AGTATTAATT GCTGCTAAAA ATATATATTT AACAATAAAT GGAAATTAAT 84052 .......... .......... .......... .......... .......... .......... 452 TATCCTTAAT AATCATTTTT GATGCCGTGC TTTCGACCCA ATAAAACATG TAATCATATC 84112 .......... .......... .......... .......... .......... .......... 452 TATTGTTTCA TTGTATTCAA CTTAAATACC TTAAACAAAG AAAATAATAA TGAAAAGATG 84172 .......... .......... .......... .......... .......... .......... 452 GTGTTTCTTG ACTTTAACCA AAAGTGTGTA TCAAAGTGTC ACTTCCCCAA ACTTCAGGGA 84232 .......... .......... .......... .......... .......... .......... 452 CCTAAGTGAA AAGCACCTCT TACAAGAACC GCATAATACA AGGCGTGATT CTCGCGGGTG 84292 .......... .......... .......... .......... .......... .......... 452 AACACCAAAA AAGGTTACCA CTTTTACCCT AGAAAAGGTA TTCCTATATA TCACAAAAGA 84352 .......... .......... .......... .......... .......... .......... 452 ATTTATTAGT AATTTTTTAA AAAAATATGA ATTTACGTCA AAAGGTCCTA CATTAGAAGT 84412 .......... .......... .......... .......... .......... .......... 452 AGAGTGTCTA AGTCAAAAAA TTTCGAATAT AAAAAAATAA ACACACAAAA GCTAAGAAGA 84472 .......... .......... .......... .......... .......... .......... 452 TTCACATACA TTTGTGATAT ATACATTTTC TTTTAAAACG AAAAGGGAGA ATAGTTTGAA 84532 .......... .......... .......... .......... .......... .......... 452 AAATACTAAA ACTTTTGATC GAAATTATTG TTACGATACC AAACTTTATA AATAAACTTT 84592 .......... .......... .......... .......... .......... .......... 452 TATCTCTAAA CTATCTAATA GTGTATTTTA AAGATATATA TGTGCCCACG TGGACACATT 84652 .......... .......... .......... .......... .......... .......... 452 ACTATTATAA TTATGCAATG GTATTTTTTA TGTCCACGTG GACACATATA TATATTTAAA 84712 .......... .......... .......... .......... .......... .......... 452 ATACATTATT AAATAGTGCA GGAATAAAAG ATTCTTTCCA AAATTTGGTA TAATAACAAT 84772 .......... .......... .......... .......... .......... .......... 452 AATTTCGATC GAAATTCAAA TATATATTTC AAACATTTTT CCTAAAAGAA AAACAAACAA 84832 .......... .......... .......... .......... .......... .......... 452 AATTCAATAT ACAAACAAAT TTTTCAATCG TAATCCTAGT AAAAAGCAAC ATACATACAT 84892 .......... .......... .......... .......... .......... .......... 452 AAATCATAAT CAACGCATGA CACATTATAT ATTGTGTCTG CAACTACTGA TCTAAATGTC 84952 .......... .......... .......... .......... .......... .......... 452 TGAATTGAAA ACAAAAAACT GGGATTTTGA TGTAACAAAC CATATATACA AAAAAATTAC 85012 .......... .......... .......... .......... .......... .......... 452 TTTTACCTTT CTATGTTTGC TGCTTCATAG ATATAAGAGA AAGGAAGGGA GGGGACCAAA 85072 .......... .......... .......... .......... .......... .......... 452 TTAATATAAA AATTAATTCA ATGATTTTGC AATCGAGTGC TTTATGATTG ACACTTTAAT 85132 .......... .......... .......... .......... .......... .......... 452 CAATGAACTG ACACAACAAT TAACCATGCA TGCATTCTTA TTCATTCATT TCGATAAAAA 85192 .......... .......... .......... .......... .......... .......... 452 AAAAAAAACA CTCATCTGAC AGTATACGTA TATATTGTCT TATGCACCAT CAAATTTTCA 85252 .......... .......... .......... .......... .......... .......... 452 GGCATGACTA AGGGTTAAAT TGGCAAAGTT GTGATTTTTA TTAGAGAAAT TCATTAAAAT 85312 .......... .......... .......... .......... .......... .......... 452 TAGGGATAAT GACAATTTGT TGATACTAAG CAATCGACAA TGGAAGATTA AAGAAGAAGA 85372 .......... .......... .......... .......... .......... .......... 452 AGAAGAAGAA GAAATCTGTT ATGGAGAGAA TTTCTCCCTC ATGCTTTTAC AATGTGTTAA 85432 .......... .......... .......... .......... .......... .......... 452 CTAACTATTA CAATGCATAA CACTCACATA TATATACAAT TAGCTAATCA ATGGAAATGA 85492 .......... .......... .......... .......... .......... .......... 452 ACCAATAACA GAATGACAGC TGGCTAACAA ACTAAACAAA CTAAACTAAC AACTAGTTAA 85552 .......... .......... .......... .......... .......... .......... 452 CTAACTAATT GAGCTCTAAC TAACTAGTTA TTCAACTCTT ATCAATACTC TTAGCATATT 85612 .......... .......... .......... .......... .......... .......... 452 CCTCAATACC CCCCTTCAAG CTAGGAGATA TGAAGATGTT CTTCATTCGG AGCTTGGAAA 85672 .......... .......... .......... .......... .......... .......... 452 CCAGATATTC ATGTTGCAAT CGACCAAGTC CTTTAGTCAG TACATCAGCA GGTTGTTCAG 85732 .......... .......... .......... .......... .......... .......... 452 TAGTAGCCAA ATGTTGAATG GATATATCAC CTCTTTGAAC CTTTTCTCTA ATAAAGTGAC 85792 .......... .......... .......... .......... .......... .......... 452 AATCAATGTC AATATGTTTG GTCCTCTCAT GGAACACAGG GTTGGATGCA ATTTGGATAG 85852 .......... .......... .......... .......... .......... .......... 452 CGGCAGTACT GTCACTATAT ACAACAATAG GCAAGACAGT AGGTATGTCT AATTCACGAA 85912 .......... .......... .......... .......... .......... .......... 452 AGAGACCAAG TATCTATGTA ACTTCAGCAA CAGTAGATGC CAGGCTTCTG TATTCTGCTT 85972 .......... .......... .......... .......... .......... .......... 452 CAGCAGAACT CCTGGAGACT GTAGACTGTT TCTTAGACTT CCAGGAAAGT AAAGACTCTC 86032 .......... .......... .......... .......... .......... .......... 452 CAAATTTAAC CATATATCCA GTAATGGACC TTCTAGTATC AGGGCATGAT CCCCAATCAG 86092 .......... .......... .......... .......... .......... .......... 452 CATCACAAAA TGCTTGTAAA GAACCAAAAT GCTGAGCAGA CAACAAAACA CCTAGGCCAG 86152 .......... .......... .......... .......... .......... .......... 452 GTTATTGTTT AATATGTCTA ACAACTCTAA TAGCAGCATT CATATGAGAT TGCTTGGGAG 86212 .......... .......... .......... .......... .......... .......... 452 CATTCATGAA CTGACTTAAG TTTTGAACAG CATATGACAA GTCAGGTCTA GTAATGGTTA 86272 .......... .......... .......... .......... .......... .......... 452 AGTAGATCAA TCTTCCAACC AATCTTTGAT ACTCACCAAT ATCTGATAGT ACAGGATCAG 86332 .......... .......... .......... .......... .......... .......... 452 ATGTAACTCC TACATACTTG TCAAAAACTA CAGTAGTGAG CTTTCCATTC AGTTCAACAG 86392 .......... .......... .......... .......... .......... .......... 452 GTGTGGCAAT AGGTTTAGAT CCACCTAAAC CCAAGTCTGA AATAATCTCT AAGGCATACT 86452 .......... .......... .......... .......... .......... .......... 452 TTCTCTGATG CATGAGAATT CCTTCATTGG TTCTGGCAAA TTCAATCCCT AGGAAATATC 86512 .......... .......... .......... .......... .......... .......... 452 TCAATGATCC TAGATTTTTG ATCTTGAAGT TATCCTTTAG CACTTGTTTG GTGTCATTGA 86572 .......... .......... .......... .......... .......... .......... 452 TTAATGTGAT GTTACTACCA GTGACTAACA AATCATCAAC ATAAATCAAA ACAATCACAA 86632 .......... .......... .......... .......... .......... .......... 452 TGCCTTCACT AGACTTCTTG ATCAATAGGG AATAATCCAA ATGGCTTTGC TGAAATCCAG 86692 .......... .......... .......... .......... .......... .......... 452 CAACTAATAA TGCCTGAGTC AACTTTACAT TCCACTGTCG TGAAGCTTGC TTAAGTCCAT 86752 .......... .......... .......... .......... .......... .......... 452 ACAATGACTT AAGCAACTTA CACACATGTT GATCCCCAGC ATGCATATGA GAGAATCCTT 86812 .......... .......... .......... .......... .......... .......... 452 GAGGTATCTG CATATAGACT TCTTCTACTA AGTCACCTTG CAAAAATGCA TTATAAACAT 86872 .......... .......... .......... .......... .......... .......... 452 CCATCTGTTG GACATCCCAT CCTTTAGATG CAGCTAGAGT AAGCACTGTT CTAACTGTGA 86932 .......... .......... .......... .......... .......... .......... 452 CCATTTTAAC AACTGGAGAA AATGTCTCCT GGTAGTCTAA ACCTTCTTGC TGACTGTATC 86992 .......... .......... .......... .......... .......... .......... 452 CCTTGGCTAC AAGTCTGGCT TTGAATCTCT CAACTTCACC ATTTGCCTTG TACTTAATCT 87052 .......... .......... .......... .......... .......... .......... 452 TGTACACCCA TTTGCAACCT ATAGCCTTTT TTCCAACAGG TAAAGTTACT ACCTCCCAAG 87112 .......... .......... .......... .......... .......... .......... 452 TCTTATTGTC TTCTAATGCC TGTATCTCTT CTTTCATAGC TGTGACCCAC CTCTTATCCT 87172 .......... .......... .......... .......... .......... .......... 452 TGGCAGCTTG ATGATAGAAC TTAGGCTCAG TGTCGATTTA ACGATTAGCA ATGCAACATT 87232 .......... .......... .......... .......... .......... .......... 452 GATAAGAGGG AGACAAGTTA CTGTAAACAA TGCTGTTTTT CAGTGAGTAC AAACAGTTAG 87292 .......... .......... .......... .......... .......... .......... 452 ACTTTGATCT GGACTTGAAT GTAGTAACAA AATCCTTTTG CCAAAGTGGA GGCCTAGAAG 87352 .......... .......... .......... .......... .......... .......... 452 TACTAGTTGA TTGTCGTCTG TTGGAGCTCA AAGATGAATC ATCTAGATTC ATTAAAAACC 87412 .......... .......... .......... .......... .......... .......... 452 ACATCTCTAC TGACAAAGAA GACCTTATTT TGTAGATCAT AAAGTTTGTA TCCCTTCTGT 87472 .......... .......... .......... .......... .......... .......... 452 GTAGTGCCAT AACCCATAAG TACTGACTTG ATGGCTCTAG AACCAAACTT ATCAGATCTC 87532 .......... .......... .......... .......... .......... .......... 452 AACAATGTAG TTGCATGACA CAAACATCCA ATGATCTTCA TGTAGGACAA ATCTGGTAGC 87592 .......... .......... .......... .......... .......... .......... 452 TTTCCAAACA GCATTTCAAA AGGAGACTTA TTAAGTAACA CAGTGGATGA AATTCTATTG 87652 .......... .......... .......... .......... .......... .......... 452 ATGATATGAA CAGCAGCTAA AATACATTCT CCCCAAAACT TGATTGGGAT ATTGCCTTGA 87712 .......... .......... .......... .......... .......... .......... 452 AATCGAATAG CTCTTGTTGT CTCCATTATA TGTCTATGTT TTCTTTCCAC TACACCATTT 87772 .......... .......... .......... .......... .......... .......... 452 TGTTGAGGTG TATATGGACA AGAGCTCTGA TACCATGACA ATTTGTTGAT ACTATGCAAT 87832 .......... .......... .......... .......... .......... .......... 452 CGACAATGGA AGATTAAAGA AGAAGAAGAA GGAAGAAGAA ATTTGTTATG GAGAGAATTT 87892 .......... .......... .......... .......... .......... .......... 452 CTCCCTCATG CTTTTACAAT GTGTTAACTA ACTATTACAA TGCATAACAC TCACATATAT 87952 .......... .......... .......... .......... .......... .......... 452 ATACAATTAG CTAATCAATG GAAATGAACC AATAACAGAA TGACAGGTGG CTAACAAACT 88012 .......... .......... .......... .......... .......... .......... 452 AAACAAACTA AACTAACAAC TAGTTAACTA ACTAATTGAG CTCTAACTAA CTAGTTATTC 88072 .......... .......... .......... .......... .......... .......... 452 AACTATTATC AATACTCTTA GCATATTCCT CAATAAGTAC CCCCTCAACC TATGCCCGAA 88132 |||||| ||||| | || |||| || || .......... .......... .......... ...CAAGTAC CCCCTTAGCC TATGTCCAAA 479 ATCCCAAAGA CACACTTATA CTATACTAAG GTCCTATTAC CCCCCTGAAC TTATTTTATA 88192 ||| || ||| ||||||||| | |||||||| || ||||| |||||||||| ||| ||||| ATCTCAGAGA TACACTTATA CCATACTAAG ATCTTATTA- CCCCCTGAAC TTA-TTTATT 537 AGTAATTTTT TACCCCTTTT TAGCCTACGT GGCACTAGTT TGAAAAAAAA GTCAACCTTT 88252 | |||||||| |||||||||| ||||||| ||||||| | || | | || AATAATTTTT TACCCCTTTT AGACCTACGT GGCACTATCT TGTGGGCCCA ATGGTTGTTG 597 GTTGGGCCCA CAAAATAGTG CCACGTAGGT CGAAAAGGGG TAAAAAATTA TTAATAAAAT 88312 | ||| ||||| ||||||||| |||||||| || ||||||| | ||||||| ACTTTTTTTT TAAACTAGTG CCACGTAGGC TAAAAAGGGG TAGAAAATTA CTTATAAAAT 657 AAGTTCA-GG GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGAG ATTTCGGGCA 88371 ||||||| || |||||||||| |||||||||| |||||||||| |||||||| |||||||||| AAGTTCAGGG GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGGA ATTTCGGGCA 717 TAGGTTAAAG AAGTACTTGG ACATTATCCC TT 88403 |||||| | | ||||||| ||||||||| || TAGGTTGAGG GGGTACTTGT GCATTATCCC TT 749 hqPGS_C08HBa0320P23.1+_SGN-E540411- (88106 88403) ******************************************************************************** EST sequence 24 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 85677 to 88562): Exon 1 86661 86675 ( 15 n); cDNA 112 126 ( 15 n); score: 0.733 Intron 1 86676 88109 (1434 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 88110 88427 ( 318 n); cDNA 127 441 ( 315 n); score: 0.896 PPA cDNA 12 1 MATCH C08HBa0320P23.1+ SGN-E540411+ 0.896 333 0.388 C PGS_C08HBa0320P23.1+_SGN-E540411+ (86661 86675,88110 88427) Alignment (genomic DNA sequence = upper lines): GGAATAATCC AAATGGCTTT GCTGAAATCC AGCAACTAAT AATGCCTGAG TCAACTTTAC 86720 || ||||| | | | | GGGATAATGC ACAAG..... .......... .......... .......... .......... 126 ATTCCACTGT CGTGAAGCTT GCTTAAGTCC ATACAATGAC TTAAGCAACT TACACACATG 86780 .......... .......... .......... .......... .......... .......... 126 TTGATCCCCA GCATGCATAT GAGAGAATCC TTGAGGTATC TGCATATAGA CTTCTTCTAC 86840 .......... .......... .......... .......... .......... .......... 126 TAAGTCACCT TGCAAAAATG CATTATAAAC ATCCATCTGT TGGACATCCC ATCCTTTAGA 86900 .......... .......... .......... .......... .......... .......... 126 TGCAGCTAGA GTAAGCACTG TTCTAACTGT GACCATTTTA ACAACTGGAG AAAATGTCTC 86960 .......... .......... .......... .......... .......... .......... 126 CTGGTAGTCT AAACCTTCTT GCTGACTGTA TCCCTTGGCT ACAAGTCTGG CTTTGAATCT 87020 .......... .......... .......... .......... .......... .......... 126 CTCAACTTCA CCATTTGCCT TGTACTTAAT CTTGTACACC CATTTGCAAC CTATAGCCTT 87080 .......... .......... .......... .......... .......... .......... 126 TTTTCCAACA GGTAAAGTTA CTACCTCCCA AGTCTTATTG TCTTCTAATG CCTGTATCTC 87140 .......... .......... .......... .......... .......... .......... 126 TTCTTTCATA GCTGTGACCC ACCTCTTATC CTTGGCAGCT TGATGATAGA ACTTAGGCTC 87200 .......... .......... .......... .......... .......... .......... 126 AGTGTCGATT TAACGATTAG CAATGCAACA TTGATAAGAG GGAGACAAGT TACTGTAAAC 87260 .......... .......... .......... .......... .......... .......... 126 AATGCTGTTT TTCAGTGAGT ACAAACAGTT AGACTTTGAT CTGGACTTGA ATGTAGTAAC 87320 .......... .......... .......... .......... .......... .......... 126 AAAATCCTTT TGCCAAAGTG GAGGCCTAGA AGTACTAGTT GATTGTCGTC TGTTGGAGCT 87380 .......... .......... .......... .......... .......... .......... 126 CAAAGATGAA TCATCTAGAT TCATTAAAAA CCACATCTCT ACTGACAAAG AAGACCTTAT 87440 .......... .......... .......... .......... .......... .......... 126 TTTGTAGATC ATAAAGTTTG TATCCCTTCT GTGTAGTGCC ATAACCCATA AGTACTGACT 87500 .......... .......... .......... .......... .......... .......... 126 TGATGGCTCT AGAACCAAAC TTATCAGATC TCAACAATGT AGTTGCATGA CACAAACATC 87560 .......... .......... .......... .......... .......... .......... 126 CAATGATCTT CATGTAGGAC AAATCTGGTA GCTTTCCAAA CAGCATTTCA AAAGGAGACT 87620 .......... .......... .......... .......... .......... .......... 126 TATTAAGTAA CACAGTGGAT GAAATTCTAT TGATGATATG AACAGCAGCT AAAATACATT 87680 .......... .......... .......... .......... .......... .......... 126 CTCCCCAAAA CTTGATTGGG ATATTGCCTT GAAATCGAAT AGCTCTTGTT GTCTCCATTA 87740 .......... .......... .......... .......... .......... .......... 126 TATGTCTATG TTTTCTTTCC ACTACACCAT TTTGTTGAGG TGTATATGGA CAAGAGCTCT 87800 .......... .......... .......... .......... .......... .......... 126 GATACCATGA CAATTTGTTG ATACTATGCA ATCGACAATG GAAGATTAAA GAAGAAGAAG 87860 .......... .......... .......... .......... .......... .......... 126 AAGGAAGAAG AAATTTGTTA TGGAGAGAAT TTCTCCCTCA TGCTTTTACA ATGTGTTAAC 87920 .......... .......... .......... .......... .......... .......... 126 TAACTATTAC AATGCATAAC ACTCACATAT ATATACAATT AGCTAATCAA TGGAAATGAA 87980 .......... .......... .......... .......... .......... .......... 126 CCAATAACAG AATGACAGGT GGCTAACAAA CTAAACAAAC TAAACTAACA ACTAGTTAAC 88040 .......... .......... .......... .......... .......... .......... 126 TAACTAATTG AGCTCTAACT AACTAGTTAT TCAACTATTA TCAATACTCT TAGCATATTC 88100 .......... .......... .......... .......... .......... .......... 126 CTCAATAAGT ACCCCCTCAA CCTATGCCCG AAATCCCAAA GACACACTTA TACTATACTA 88160 | |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| .........T ACCCCCTCAA CCTATGCCCG AAATTCCAGA GACACACTTA TACTATACTA 177 AGGTCCTATT ACCCCCCTGA ACTTATTTTA TAAGTAATTT TTTACCCCTT TTTAGCCTAC 88220 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGGTCCTATT ACCCCCCTGA ACTTATTTTA TAAGTAATTT TCTACCCCTT TTTAGCCTAC 237 GTGGCACTAG TTTGAAAAAA AAGTCAACCT TTGTTGGGCC CACAAAATAG TGCCACGTAG 88280 |||||||||| ||| |||||| |||||||| ||||||| ||||| |||| |||||||||| GTGGCACTAG TTTAAAAAAA AAGTCAACAA CCATTGGGCC CACAAGATAG TGCCACGTAG 297 GTCGAAAAGG GGTAAAAAAT TATTAATAAA ATAAGTTCAG GGGGTAATAG GACCTTAGTA 88340 ||| |||||| |||||||||| ||||||| || |||||||||| ||||||||| || ||||||| GTCTAAAAGG GGTAAAAAAT TATTAAT-AA ATAAGTTCAG GGGGTAATAA GATCTTAGTA 356 TAGTATAAGT GTGTCTCTGA GATTTCGGGC ATAGGTTAAA GAAGTACTTG GACATTATCC 88400 | |||||||| || ||||||| ||||| || | ||||| ||| | ||||||| |||||||||| TGGTATAAGT GTATCTCTGA GATTTTGGAC ATAGGCTAAG GGGGTACTTG GACATTATCC 416 CTTAAAATTA AGTAAATATA CGAAAAT 88427 | | ||| | | || ||| || || C-AACAATAA ATAAAGGATA -TAACAT 441 hqPGS_C08HBa0320P23.1+_SGN-E540411+ (88110 88427) ******************************************************************************** EST sequence 96 -strand 702 n (File: SGN-E540414-) 1 AAGTAATTTC TACCCCTTTT TAGCCTACGT GGCACTAGTT TAAAAAAAAA GTCAACAACC 61 ATTGGGCCCA CAAGATAGTG CCACGTAGGT CTAAAAGGGG TAAAAAATTA TTAATAAATA 121 AGTTCAGGGG GTAATAAGAT CTTAGTATGG TATAAGTGTA TCTCTGAGAT TTTGGACATA 181 GGCTAAGGGG GTACTTGGAC ATTATCCCAA CAATAAATAA AGGATATAAC ATGATTCAAA 241 AGACAACACG TGATAACCAC TTCTACAACT TGTGCATGAT CAATTGAGCA CCATATTGAG 301 GTTGAAGCAA CAATGGGTGA GGAGCATGAG CATAAGATGG AGAGAGTTCA AATGCATAAT 361 GTTTTAGAAT CATGACCATT GCCATTTTTG CCTCTAACAT AGCAAAATTT TGCCCAATAC 421 ATATTCTTGG ACCCCAACTA AATGGAAAAA ATACAACTTG TCCTTTTGTT GCTTTTGATA 481 TTCCTTCACT AAATCTCTCT GGCATAAACT CCATTGCATC ATCTCCCCAT ATTTCAGTAT 541 CATGATGCAC TAACATTGTT GCCAATATGA GTTGGACCCC AGAGGGTAAA CACAAATCCC 601 CTAACTTTGT TTCTGTATTC ACCATGCGAT TAATCGCGTA TACTGATGTA TACAACCTTA 661 AGACCTCGTT TAAGATCATT GTAACCACTT TTAGTTGATT CA Predicted gene structure (within gDNA segment 87493 to 88562): Exon 1 88192 88427 ( 236 n); cDNA 1 232 ( 232 n); score: 0.864 MATCH C08HBa0320P23.1+ SGN-E540414- 0.864 236 0.336 C PGS_C08HBa0320P23.1+_SGN-E540414- (88192 88427) Alignment (genomic DNA sequence = upper lines): AAGTAATTTT TTACCCCTTT TTAGCCTACG TGGCACTAGT TTGAAAAAAA AGTCAACCTT 88251 |||||| ||| ||||||||| |||||||||| |||||||||| || ||||||| ||||||| AAGTAA-TTT CTACCCCTTT TTAGCCTACG TGGCACTAGT TTAAAAAAAA AGTCAACAAC 59 TGTTGGGCCC ACAAAATAGT GCCACGTAGG TCGAAAAGGG GTAAAAAATT ATTAATAAAA 88311 |||||||| |||| ||||| |||||||||| || ||||||| |||||||||| |||||| ||| CATTGGGCCC ACAAGATAGT GCCACGTAGG TCTAAAAGGG GTAAAAAATT ATTAAT-AAA 118 TAAGTTCAGG GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGAG ATTTCGGGCA 88371 |||||||||| |||||||| | | |||||||| ||||||||| | |||||||| |||| || || TAAGTTCAGG GGGTAATAAG ATCTTAGTAT GGTATAAGTG TATCTCTGAG ATTTTGGACA 178 TAGGTTAAAG AAGTACTTGG ACATTATCCC TTAAAATTAA GTAAATATAC GAAAAT 88427 |||| ||| | |||||||| |||||||||| | ||| || || ||| || || TAGGCTAAGG GGGTACTTGG ACATTATCCC -AACAATAAA TAAAGGATA- TAACAT 232 hqPGS_C08HBa0320P23.1+_SGN-E540414- (88192 88427) Total number of EST alignments reported: 155 ________________________________________________________________________________ Predicted gene locations (19) in segment 1 to 88562: PGL 1 (- strand): 750 1 AGS-1 (750 1) SCR (e 0.998) Exon 1 750 1 ( 750 n); score: 0.998 PGS (386 1) SGN-E392467- PGS (750 91) SGN-E397852+ PGS (750 96) SGN-E396268+ PGS (749 178) SGN-E241394+ PGS (749 180) SGN-E233394+ PGS (749 199) SGN-E233643+ PGS (749 234) SGN-E241366+ PGS (749 273) SGN-E239684+ PGS (749 313) SGN-E236049+ 3-phase translation of AGS-1 (-strand): . . . . . . 750 CAAACACTTGTACAAAAAATCTCTGGCAATCTCAGAAACATCACTAGGAACCATTGGTTC Q T L V Q K I S G N L R N I T R N H W F K H L Y K K S L A I S E T S L G T I G S N T C T K N L W Q S Q K H H - E P L V . . . . . . 690 TTCATTCATAATCTTCCATTGCAAATCCTTAGTGTCGCGATAAATCCAAACGCGACACCC F I H N L P L Q I L S V A I N P N A T P S F I I F H C K S L V S R - I Q T R H P L H S - S S I A N P - C R D K S K R D T . . . . . . 630 AGTCATCATCTCTGCCACAGTACACCCTAACGACCATATATCATAACTCCTGCCATGAAA S H H L C H S T P - R P Y I I T P A M K V I I S A T V H P N D H I S - L L P - K Q S S S L P Q Y T L T T I Y H N S C H E . . . . . . 570 ACCACTGATCAAAGATTCTGGGGGCGCGTAAGGTAGAGTCCCTCTGTTGCTCATCGCAGC T T D Q R F W G R V R - S P S V A H R S P L I K D S G G A - G R V P L L L I A A N H - S K I L G A R K V E S L C C S S Q . . . . . . 510 ACCAGTCATATATGCCACACCTTCGGGAACTCTCAACGACAATCCAAAGTCAGCCAACTT T S H I C H T F G N S Q R Q S K V S Q L P V I Y A T P S G T L N D N P K S A N F H Q S Y M P H L R E L S T T I Q S Q P T . . . . . . 450 TAACTTGTGCATCCCACCACGTTCAGCGTTGTTGAAAATCAAAACATTAGCAGGTTTAAT - L V H P T T F S V V E N Q N I S R F N N L C I P P R S A L L K I K T L A G L I L T C A S H H V Q R C - K S K H - Q V - . . . . . . 390 ATCACAATGAACCCACCCTTTCTCATGAACGTGTTGAATACCCTTTAAGAGTTGATATGC I T M N P P F L M N V L N T L - E L I C S Q - T H P F S - T C - I P F K S - Y A Y H N E P T L S H E R V E Y P L R V D M . . . . . . 330 ATAGAAACCTACTTCCACTTCAGACATCCGTATCCTTCTCATCTTCGAATTAATGATCAA I E T Y F H F R H P Y P S H L R I N D Q - K P T S T S D I R I L L I F E L M I K H R N L L P L Q T S V S F S S S N - - S . . . . . . 270 ATCGTGTAGCGATCCACCATATGCATACTCAAGAAACAGATTGTAAGTTGAGACATTACC I V - R S T I C I L K K Q I V S - D I T S C S D P P Y A Y S R N R L - V E T L P N R V A I H H M H T Q E T D C K L R H Y . . . . . . 210 GTTATCGATGCTAACGTCTGATCCAATGAACTGAACCACGTAAGGTGAATCTTTGAGGGT V I D A N V - S N E L N H V R - I F E G L S M L T S D P M N - T T - G E S L R V R Y R C - R L I Q - T E P R K V N L - G . . . . . . 150 TGTCAAGATTTCTGCTTCTCGTTGGAGTGAAACAGAACGGTTCATATCAGCACATTTAAC C Q D F C F S L E - N R T V H I S T F N V K I S A S R W S E T E R F I S A H L T L S R F L L L V G V K Q N G S Y Q H I - . . . . . . 90 AGCAGCAACAGAAACACATAACGAAACAGGATCCATCTTCACTGCATAATAAACTTTGCC S S N R N T - R N R I H L H C I I N F A A A T E T H N E T G S I F T A - - T L P Q Q Q Q K H I T K Q D P S S L H N K L C . . . 30 GTAAGAGCCAGCGCCAAGAACGTAAAGCTT V R A S A K N V K L - E P A P R T - S R K S Q R Q E R K A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1 AAGCTTTACGTTCTTGGCGCTGGCTCTTACGGCAAAGTTTATTATGCAGTGAAGATGGAT K L Y V L G A G S Y G K V Y Y A V K M D S F T F L A L A L T A K F I M Q - R W I A L R S W R W L L R Q S L L C S E D G . . . . . . 61 CCTGTTTCGTTATGTGTTTCTGTTGCTGCTGTTAAATGTGCTGATATGAACCGTTCTGTT P V S L C V S V A A V K C A D M N R S V L F R Y V F L L L L L N V L I - T V L F S C F V M C F C C C C - M C - Y E P F C . . . . . . 121 TCACTCCAACGAGAAGCAGAAATCTTGACAACCCTCAAAGATTCACCTTACGTGGTTCAG S L Q R E A E I L T T L K D S P Y V V Q H S N E K Q K S - Q P S K I H L T W F S F T P T R S R N L D N P Q R F T L R G S . . . . . . 181 TTCATTGGATCAGACGTTAGCATCGATAACGGTAATGTCTCAACTTACAATCTGTTTCTT F I G S D V S I D N G N V S T Y N L F L S L D Q T L A S I T V M S Q L T I C F L V H W I R R - H R - R - C L N L Q S V S . . . . . . 241 GAGTATGCATATGGTGGATCGCTACACGATTTGATCATTAATTCGAAGATGAGAAGGATA E Y A Y G G S L H D L I I N S K M R R I S M H M V D R Y T I - S L I R R - E G Y - V C I W W I A T R F D H - F E D E K D . . . . . . 301 CGGATGTCTGAAGTGGAAGTAGGTTTCTATGCATATCAACTCTTAAAGGGTATTCAACAC R M S E V E V G F Y A Y Q L L K G I Q H G C L K W K - V S M H I N S - R V F N T T D V - S G S R F L C I S T L K G Y S T . . . . . . 361 GTTCATGAGAAAGGGTGGGTTCATTGTGATATTAAACCTGCTAATGTTTTGATTTTCAAC V H E K G W V H C D I K P A N V L I F N F M R K G G F I V I L N L L M F - F S T R S - E R V G S L - Y - T C - C F D F Q . . . . . . 421 AACGCTGAACGTGGTGGGATGCACAAGTTAAAGTTGGCTGACTTTGGATTGTCGTTGAGA N A E R G G M H K L K L A D F G L S L R T L N V V G C T S - S W L T L D C R - E Q R - T W W D A Q V K V G - L W I V V E . . . . . . 481 GTTCCCGAAGGTGTGGCATATATGACTGGTGCTGCGATGAGCAACAGAGGGACTCTACCT V P E G V A Y M T G A A M S N R G T L P F P K V W H I - L V L R - A T E G L Y L S S R R C G I Y D W C C D E Q Q R D S T . . . . . . 541 TACGCGCCCCCAGAATCTTTGATCAGTGGTTTTCATGGCAGGAGTTATGATATATGGTCG Y A P P E S L I S G F H G R S Y D I W S T R P Q N L - S V V F M A G V M I Y G R L R A P R I F D Q W F S W Q E L - Y M V . . . . . . 601 TTAGGGTGTACTGTGGCAGAGATGATGACTGGGTGTCGCGTTTGGATTTATCGCGACACT L G C T V A E M M T G C R V W I Y R D T - G V L W Q R - - L G V A F G F I A T L V R V Y C G R D D D W V S R L D L S R H . . . . . . 661 AAGGATTTGCAATGGAAGATTATGAATGAAGAACCAATGGTTCCTAGTGATGTTTCTGAG K D L Q W K I M N E E P M V P S D V S E R I C N G R L - M K N Q W F L V M F L R - G F A M E D Y E - R T N G S - - C F - . . . 721 ATTGCCAGAGATTTTTTGTACAAGTGTTTG I A R D F L Y K C L L P E I F C T S V D C Q R F F V Q V F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-1_AGS-1_PPS_1 (1 750) (frame '1'; 750 bp, 250 residues) 1 KLYVLGAGSY GKVYYAVKMD PVSLCVSVAA VKCADMNRSV SLQREAEILT TLKDSPYVVQ 61 FIGSDVSIDN GNVSTYNLFL EYAYGGSLHD LIINSKMRRI RMSEVEVGFY AYQLLKGIQH 121 VHEKGWVHCD IKPANVLIFN NAERGGMHKL KLADFGLSLR VPEGVAYMTG AAMSNRGTLP 181 YAPPESLISG FHGRSYDIWS LGCTVAEMMT GCRVWIYRDT KDLQWKIMNE EPMVPSDVSE 241 IARDFLYKCL PGL 2 (+ strand): 2310 2862 AGS-1 (2310 2862) SCR (e 0.992) Exon 1 2310 2862 ( 553 n); score: 0.992 PGS (2310 2862) SGN-E543609- PGS (2424 2852) SGN-E304567- 3-phase translation of AGS-1 (+strand): . . . . . . 2310 CGGTGCTACGAGTGATACAAACTCCGAGAATTCAACAAGGCCATTGTCGTTTTTATCCGC R C Y E - Y K L R E F N K A I V V F I R G A T S D T N S E N S T R P L S F L S A V L R V I Q T P R I Q Q G H C R F Y P . . . . . . 2370 CTTTTGAATCAAAGTTTCGAGCTGATCAGGACTTGGTTTTAAACCAAGAGACCTCAATAG L L N Q S F E L I R T W F - T K R P Q - F - I K V S S - S G L G F K P R D L N S P F E S K F R A D Q D L V L N Q E T S I . . . . . . 2430 CGCGCCAAGCTCGAGTTGGGTTAGACTCCCATCATCATTTCTGTCGAACGATCGGAAAAT R A K L E L G - T P I I I S V E R S E N A P S S S W V R L P S S F L S N D R K I A R Q A R V G L D S H H H F C R T I G K . . . . . . 2490 TTCTCGCAGTTCAGCCAACTGCTCATCATCTAACTTAACAGGTGCTTTATTGCTCATATT F S Q F S Q L L I I - L N R C F I A H I S R S S A N C S S S N L T G A L L L I F F L A V Q P T A H H L T - Q V L Y C S Y . . . . . . 2550 TCTCTGTGAAGCAATAAATCAAACACTTGATCTGCAGATTAAAATTGTCCTTCAAAGAAA S L - S N K S N T - S A D - N C P S K K L C E A I N Q T L D L Q I K I V L Q R K F S V K Q - I K H L I C R L K L S F K E . . . . . . 2610 GAATATCAATGGATACCCTTTTCCAACCAACTGGGTACTCTGTTTTCCTGCTATTCGTGC E Y Q W I P F S N Q L G T L F S C Y S C N I N G Y P F P T N W V L C F P A I R A R I S M D T L F Q P T G Y S V F L L F V . . . . . . 2670 CGTCCTCTTTCTCTTGCTGTTCTACTGACCTTTTGACTACTCTTTGCTCAATTTTGTGTC R P L S L A V L L T F - L L F A Q F C V V L F L L L F Y - P F D Y S L L N F V S P S S F S C C S T D L L T T L C S I L C . . . . . . 2730 ACTTTCGAATAGCTATTTTTCTTGGACTTGGTAATGGATCCACCAAATTCTATGAATTTG T F E - L F F L D L V M D P P N S M N L L S N S Y F S W T W - W I H Q I L - I C H F R I A I F L G L G N G S T K F Y E F . . . . . . 2790 TTGAATTACAAGGAAAAGTTATACAGATTTGTAGAATTGATATTGAAAGAAAATATTGAC L N Y K E K L Y R F V E L I L K E N I D - I T R K S Y T D L - N - Y - K K I L T V E L Q G K V I Q I C R I D I E R K Y - . . 2850 AACTTCTTCCCAA N F F P T S S Q Q L L P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-2_AGS-1_PPS_1 (2395 2697) (frame '2'; 300 bp, 100 residues) 1 SGLGFKPRDL NSAPSSSWVR LPSSFLSNDR KISRSSANCS SSNLTGALLL IFLCEAINQT 61 LDLQIKIVLQ RKNINGYPFP TNWVLCFPAI RAVLFLLLFY - >C08HBa0320P23.1+_PGL-2_AGS-1_PPS_2 (2567 2848) (frame '0'; 279 bp, 93 residues) 1 IKHLICRLKL SFKERISMDT LFQPTGYSVF LLFVPSSFSC CSTDLLTTLC SILCHFRIAI 61 FLGLGNGSTK FYEFVELQGK VIQICRIDIE RKY- 3-phase translation of AGS-1 (-strand): . . . . . . 2862 TTGGGAAGAAGTTGTCAATATTTTCTTTCAATATCAATTCTACAAATCTGTATAACTTTT L G R S C Q Y F L S I S I L Q I C I T F W E E V V N I F F Q Y Q F Y K S V - L F G K K L S I F S F N I N S T N L Y N F . . . . . . 2802 CCTTGTAATTCAACAAATTCATAGAATTTGGTGGATCCATTACCAAGTCCAAGAAAAATA P C N S T N S - N L V D P L P S P R K I L V I Q Q I H R I W W I H Y Q V Q E K - S L - F N K F I E F G G S I T K S K K N . . . . . . 2742 GCTATTCGAAAGTGACACAAAATTGAGCAAAGAGTAGTCAAAAGGTCAGTAGAACAGCAA A I R K - H K I E Q R V V K R S V E Q Q L F E S D T K L S K E - S K G Q - N S K S Y S K V T Q N - A K S S Q K V S R T A . . . . . . 2682 GAGAAAGAGGACGGCACGAATAGCAGGAAAACAGAGTACCCAGTTGGTTGGAAAAGGGTA E K E D G T N S R K T E Y P V G W K R V R K R T A R I A G K Q S T Q L V G K G Y R E R G R H E - Q E N R V P S W L E K G . . . . . . 2622 TCCATTGATATTCTTTCTTTGAAGGACAATTTTAATCTGCAGATCAAGTGTTTGATTTAT S I D I L S L K D N F N L Q I K C L I Y P L I F F L - R T I L I C R S S V - F I I H - Y S F F E G Q F - S A D Q V F D L . . . . . . 2562 TGCTTCACAGAGAAATATGAGCAATAAAGCACCTGTTAAGTTAGATGATGAGCAGTTGGC C F T E K Y E Q - S T C - V R - - A V G A S Q R N M S N K A P V K L D D E Q L A L L H R E I - A I K H L L S - M M S S W . . . . . . 2502 TGAACTGCGAGAAATTTTCCGATCGTTCGACAGAAATGATGATGGGAGTCTAACCCAACT - T A R N F P I V R Q K - - W E S N P T E L R E I F R S F D R N D D G S L T Q L L N C E K F S D R S T E M M M G V - P N . . . . . . 2442 CGAGCTTGGCGCGCTATTGAGGTCTCTTGGTTTAAAACCAAGTCCTGATCAGCTCGAAAC R A W R A I E V S W F K T K S - S A R N E L G A L L R S L G L K P S P D Q L E T S S L A R Y - G L L V - N Q V L I S S K . . . . . . 2382 TTTGATTCAAAAGGCGGATAAAAACGACAATGGCCTTGTTGAATTCTCGGAGTTTGTATC F D S K G G - K R Q W P C - I L G V C I L I Q K A D K N D N G L V E F S E F V S L - F K R R I K T T M A L L N S R S L Y . . 2322 ACTCGTAGCACCG T R S T L V A P H S - H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-2_AGS-1_PPS_1 (2567 2310) (frame '2'; 258 bp, 86 residues) 1 FIASQRNMSN KAPVKLDDEQ LAELREIFRS FDRNDDGSLT QLELGALLRS LGLKPSPDQL 61 ETLIQKADKN DNGLVEFSEF VSLVAP PGL 3 (- strand): 9744 6474 AGS-1 (6929 6474) SCR (e 0.993) Exon 1 6929 6474 ( 456 n); score: 0.993 PGS (6869 6474) SGN-E541495- PGS (6869 6474) SGN-E541497+ PGS (6868 6474) SGN-E297853+ PGS (6929 6479) SGN-E219074- 3-phase translation of AGS-1 (-strand): . . . . . . 6929 CCAATTCCAGGTGGAAGGACAAAATCCTGGCTTCTCACAACCTACCTTGATAAGGATATG P I P G G R T K S W L L T T Y L D K D M Q F Q V E G Q N P G F S Q P T L I R I C N S R W K D K I L A S H N L P - - G Y . . . . . . 6869 CGGATCTCCAGAGGCGATGGTGGGCTTTTTGTGCTTGTTAAGGAAGGGAGTTCTCTTCTA R I S R G D G G L F V L V K E G S S L L G S P E A M V G F L C L L R K G V L F Y A D L Q R R W W A F C A C - G R E F S S . . . . . . 6809 TATTAGTAAGGTATCCATTATCCTATATTGTGATTTACAAATGTCTTAGGAACTGCAATG Y - - G I H Y P I L - F T N V L G T A M I S K V S I I L Y C D L Q M S - E L Q W I L V R Y P L S Y I V I Y K C L R N C N . . . . . . 6749 GTATGTACTGCTACATCGATTTATCGCGGGATGTAGAGTTTAAAACTCCTTAGCTGTAAG V C T A T S I Y R G M - S L K L L S C K Y V L L H R F I A G C R V - N S L A V R G M Y C Y I D L S R D V E F K T P - L - . . . . . . 6689 GTGGGACACTCTTTTAGGACTCAAGTACTTGCACTGAATTATCTCAGGATCAAGCTGTGA V G H S F R T Q V L A L N Y L R I K L - W D T L L G L K Y L H - I I S G S S C E G G T L F - D S S T C T E L S Q D Q A V . . . . . . 6629 GATTAGTCCTAGTAAGAAGTGTGCTGAAATAAAATGTGATATAGCTTTGCATTTTCCTAT D - S - - E V C - N K M - Y S F A F S Y I S P S K K C A E I K C D I A L H F P M R L V L V R S V L K - N V I - L C I F L . . . . . . 6569 GTAGTAAGATAACGATGTTTCAGTAATTTGGAGGTCAATCATCTGTAATTTCAGCTTATC V V R - R C F S N L E V N H L - F Q L I - - D N D V S V I W R S I I C N F S L S C S K I T M F Q - F G G Q S S V I S A Y . . . . 6509 TGGAAAGAAAATAACTTAACAATTACGTTTAATCTA W K E N N L T I T F N L G K K I T - Q L R L I L E R K - L N N Y V - S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 6474 TAGATTAAACGTAATTGTTAAGTTATTTTCTTTCCAGATAAGCTGAAATTACAGATGATT - I K R N C - V I F F P D K L K L Q M I R L N V I V K L F S F Q I S - N Y R - L D - T - L L S Y F L S R - A E I T D D . . . . . . 6534 GACCTCCAAATTACTGAAACATCGTTATCTTACTACATAGGAAAATGCAAAGCTATATCA D L Q I T E T S L S Y Y I G K C K A I S T S K L L K H R Y L T T - E N A K L Y H - P P N Y - N I V I L L H R K M Q S Y I . . . . . . 6594 CATTTTATTTCAGCACACTTCTTACTAGGACTAATCTCACAGCTTGATCCTGAGATAATT H F I S A H F L L G L I S Q L D P E I I I L F Q H T S Y - D - S H S L I L R - F T F Y F S T L L T R T N L T A - S - D N . . . . . . 6654 CAGTGCAAGTACTTGAGTCCTAAAAGAGTGTCCCACCTTACAGCTAAGGAGTTTTAAACT Q C K Y L S P K R V S H L T A K E F - T S A S T - V L K E C P T L Q L R S F K L S V Q V L E S - K S V P P Y S - G V L N . . . . . . 6714 CTACATCCCGCGATAAATCGATGTAGCAGTACATACCATTGCAGTTCCTAAGACATTTGT L H P A I N R C S S T Y H C S S - D I C Y I P R - I D V A V H T I A V P K T F V S T S R D K S M - Q Y I P L Q F L R H L . . . . . . 6774 AAATCACAATATAGGATAATGGATACCTTACTAATATAGAAGAGAACTCCCTTCCTTAAC K S Q Y R I M D T L L I - K R T P F L N N H N I G - W I P Y - Y R R E L P S L T - I T I - D N G Y L T N I E E N S L P - . . . . . . 6834 AAGCACAAAAAGCCCACCATCGCCTCTGGAGATCCGCATATCCTTATCAAGGTAGGTTGT K H K K P T I A S G D P H I L I K V G C S T K S P P S P L E I R I S L S R - V V Q A Q K A H H R L W R S A Y P Y Q G R L . . . . 6894 GAGAAGCCAGGATTTTGTCCTTCCACCTGGAATTGG E K P G F C P S T W N W R S Q D F V L P P G I - E A R I L S F H L E L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-3_AGS-1_PPS_1 (6495 6710) (frame '1'; 213 bp, 71 residues) 1 VIFFPDKLKL QMIDLQITET SLSYYIGKCK AISHFISAHF LLGLISQLDP EIIQCKYLSP 61 KRVSHLTAKE F- AGS-2 (9744 9114,7521 7326,7112 6944) SCR (e 1.000 d 0.996 a 0.862,e 1.000 d 0.988 a 0.999,e 1.000) Exon 1 9744 9114 ( 631 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 Pa: 0.862 Exon 2 7521 7326 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 Pa: 0.999 Exon 3 7112 6944 ( 169 n); score: 1.000 PGS (9488 9114,7521 7326,7112 6944) SGN-E260815+ PGS (9322 9114,7521 7326,7112 6973) SGN-E268455+ PGS (9331 9114,7521 7326,7112 7064) SGN-E291696+ PGS (9628 9114,7521 7354) SGN-E320178+ PGS (9351 9114,7521 7389) SGN-E337846+ PGS (9352 9114,7521 7468) SGN-E264669+ PGS (9697 9114) SGN-E329534+ PGS (9698 9116) SGN-E247707+ PGS (9298 9116) SGN-E294794+ PGS (9561 9117) SGN-E268341+ PGS (9628 9124) SGN-E320074+ PGS (9561 9124) SGN-E268581+ PGS (9729 9131) SGN-E320171+ PGS (9744 9179) SGN-E203261+ PGS (9701 9196) SGN-E243032+ PGS (9686 9230) SGN-E287646+ PGS (9730 9328) SGN-E292686+ PGS (9628 9368) SGN-E320774+ PGS (9744 9435) SGN-E277271+ 3-phase translation of AGS-2 (-strand): . . . . . . 9744 ATAAAACCGAAGGTCTCAAATCACCGTCGACAACCACCGCTTCCGCCGCCATTTCCACGG I K P K V S N H R R Q P P L P P P F P R - N R R S Q I T V D N H R F R R H F H G K T E G L K S P S T T T A S A A I S T . . . . . . 9684 TTACACCGCCGGAGGACGTCCGTTTCCAAAAGTAATTAAATATGTCCACTCTCTACAATC L H R R R T S V S K S N - I C P L S T I Y T A G G R P F P K V I K Y V H S L Q S V T P P E D V R F Q K - L N M S T L Y N . . . . . . 9624 CTCTAATTTTCACCATTAAAAACCCAAAAGGCAGCCTTAAACCTCACACTTCCCTTCCTT L - F S P L K T Q K A A L N L T L P F L S N F H H - K P K R Q P - T S H F P S F P L I F T I K N P K G S L K P H T S L P . . . . . . 9564 CTTCTGTCCCGACTTTTAGGCTTCGTAAATTTCAAAATTTCTCAGTTCAATCCTCCATTT L L S R L L G F V N F K I S Q F N P P F F C P D F - A S - I S K F L S S I L H F S S V P T F R L R K F Q N F S V Q S S I . . . . . . 9504 CCTCATCCAATGAGCCGGAAAAACCCACCTCTATTACACCGGATAATGATAAAGCTGACG P H P M S R K N P P L L H R I M I K L T L I Q - A G K T H L Y Y T G - - - S - R S S S N E P E K P T S I T P D N D K A D . . . . . . 9444 ATAAAATGGTCGAGTTCGTGGATGAATGGGGAGAGAAGTCGGAGCCCGAACCCGGACCGG I K W S S S W M N G E R S R S P N P D R - N G R V R G - M G R E V G A R T R T G D K M V E F V D E W G E K S E P E P G P . . . . . . 9384 TTACGAAGTTAGCGGATTCGGATCCTCCGGAGTATGATGATGAGTGGGGTAATGGAAGTC L R S - R I R I L R S M M M S G V M E V Y E V S G F G S S G V - - - V G - W K S V T K L A D S D P P E Y D D E W G N G S . . . . . . 9324 CCGGAGTTGACGTGAGTGGTGAAGAGGACGAGAAGCTTCTAGAGCTGAAAAGGTGTTTGG P E L T - V V K R T R S F - S - K G V W R S - R E W - R G R E A S R A E K V F G P G V D V S G E E D E K L L E L K R C L . . . . . . 9264 TGGATACAGTTTATGGGACGGATTTCGGATTTCGGGCTTCATCAGAGATTCGGGCCGAGG W I Q F M G R I S D F G L H Q R F G P R G Y S L W D G F R I S G F I R D S G R G V D T V Y G T D F G F R A S S E I R A E . . . . . . 9204 CATTGGAGTTCGTTTGTCAGTTGGAGGCAGCCAATCCTTCTCCAGCACCAACTGAGTCTC H W S S F V S W R Q P I L L Q H Q L S L I G V R L S V G G S Q S F S S T N - V S A L E F V C Q L E A A N P S P A P T E S . . . . : . . 9144 CTGAGTTGCTTGATGGGAACTGGATTTTAGT : GTTCACTGCATTTTCCGAGTTGTTACCTC L S C L M G T G F - : C S L H F P S C Y L - V A - W E L D F S : V H C I F R V V T S P E L L D G N W I L V : F T A F S E L L P . . . . . . 7492 TTCTTGCTGTGGGTAACATTCCTCTGTTGAAGGTAGAAAAGATTAGCCAAGACGTAAATA F L L W V T F L C - R - K R L A K T - I S C C G - H S S V E G R K D - P R R K Y L L A V G N I P L L K V E K I S Q D V N . . . . . . 7432 CAAACAGCTCGACTATAGAGAATGCGACTACATTATCAAGCCCTGTAGCCACCTTGTCCT Q T A R L - R M R L H Y Q A L - P P C P K Q L D Y R E C D Y I I K P C S H L V L T N S S T I E N A T T L S S P V A T L S . . . . . : . 7372 TTAGTGCTACTGCCACTTTTGAAGTTCGAAGCCCCTCTAGAATACAG : GTTGAATTCAAGG L V L L P L L K F E A P L E Y R : L N S R - C Y C H F - S S K P L - N T : G - I Q G F S A T A T F E V R S P S R I Q : V E F K . . . . . . 7099 AAGGGAATTTTAAACCTCCAGAAATAAAATCGAACATAAATCTGCCGGAAACTGTGGATT K G I L N L Q K - N R T - I C R K L W I R E F - T S R N K I E H K S A G N C G F E G N F K P P E I K S N I N L P E T V D . . . . . . 7039 TGTTTGGGCAAAAGATAAGTCTCTCTCCTGTACAGCAATCTCTAGGTCCTCTGGAAAACG C L G K R - V S L L Y S N L - V L W K T V W A K D K S L S C T A I S R S S G K R L F G Q K I S L S P V Q Q S L G P L E N . . . . 6979 CTGTGGCAGGCATAGCACGAACTATTTCTGGTCAGC L W Q A - H E L F L V S C G R H S T N Y F W S A V A G I A R T I S G Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-3_AGS-2_PPS_1 (9649 9114,7521 7326,7112 6945) (frame '0'; 900 bp, 300 residues) 1 LNMSTLYNPL IFTIKNPKGS LKPHTSLPSS VPTFRLRKFQ NFSVQSSISS SNEPEKPTSI 61 TPDNDKADDK MVEFVDEWGE KSEPEPGPVT KLADSDPPEY DDEWGNGSPG VDVSGEEDEK 121 LLELKRCLVD TVYGTDFGFR ASSEIRAEAL EFVCQLEAAN PSPAPTESPE LLDGNWILVF 181 TAFSELLPLL AVGNIPLLKV EKISQDVNTN SSTIENATTL SSPVATLSFS ATATFEVRSP 241 SRIQVEFKEG NFKPPEIKSN INLPETVDLF GQKISLSPVQ QSLGPLENAV AGIARTISGQ PGL 4 (- strand): 14916 10584 AGS-1 (14916 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10584) SCR (e 1.000 d 0.025 a 0.729,e 1.000 d 1.000 a 0.987,e 1.000 d 0.999 a 1.000,e 1.000 d 0.979 a 0.928,e 1.000 d 0.994 a 0.984,e 1.000 d 0.959 a 0.000,e 1.000) Exon 1 14916 14866 ( 51 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 Pa: 0.729 Exon 2 14787 14677 ( 111 n); score: 1.000 Intron 2 14676 14048 ( 629 n); Pd: 1.000 Pa: 0.987 Exon 3 14047 13969 ( 79 n); score: 1.000 Intron 3 13968 12803 (1166 n); Pd: 0.999 Pa: 1.000 Exon 4 12802 12683 ( 120 n); score: 1.000 Intron 4 12682 12608 ( 75 n); Pd: 0.979 Pa: 0.928 Exon 5 12607 12497 ( 111 n); score: 1.000 Intron 5 12496 11241 (1256 n); Pd: 0.994 Pa: 0.984 Exon 6 11240 11062 ( 179 n); score: 1.000 Intron 6 11061 10959 ( 103 n); Pd: 0.959 Pa: 0.000 Exon 7 10958 10584 ( 375 n); score: 1.000 PGS (12757 12683,12607 12497,11240 11062,10958 10584) SGN-E372219- PGS (12717 12683,12607 12497,11240 11062,10958 10584) SGN-E397002- PGS (11135 11062,10958 10799) SGN-E389458- PGS (14915 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10933) SGN-E372220+ PGS (14915 14866,14787 14677,14047 13969,12802 12683,12607 12582) SGN-E283056+ PGS (14916 14866,14787 14677,14047 14022) SGN-E397003+ 3-phase translation of AGS-1 (-strand): . . . . . . : 14916 TGGAGATAGAGTTATTACTGATCCTCTTTGCAAGCCATTCAGCATGGGAAG : GAATCTCCT W R - S Y Y - S S L Q A I Q H G K : E S P G D R V I T D P L C K P F S M G R : N L L E I E L L L I L F A S H S A W E : G I S . . . . . . 14778 GTGTGTTTATTCGAAAAAACATATGAATGATGACCCCGAACTTGCTGAGATGAAAAAGAG V C L F E K T Y E - - P R T C - D E K E C V Y S K K H M N D D P E L A E M K K R C V F I R K N I - M M T P N L L R - K R . . . . . : . 14718 AGCAAACACAAGAAGCTTGAAGGAGATGGCTTTGCTATTGAG : GGGTGGATCAAAAATAAT S K H K K L E G D G F A I E : G W I K N N A N T R S L K E M A L L L R : G G S K I I E Q T Q E A - R R W L C Y - : G V D Q K - . . . . . . 14029 ATGGATTGCTCCTAGTGGTGGAAGAGATAGGCCAGACCCTGTTACAAAAGAATGGTATCC M D C S - W W K R - A R P C Y K R M V S W I A P S G G R D R P D P V T K E W Y P Y G L L L V V E E I G Q T L L Q K N G I . : . . . . . 13969 A : GCACCATTTGATGCTTCCGCGACAGACAACATGAGGAGGCTTGTACAACATGCTGGTGT : S T I - C F R D R Q H E E A C T T C W C : A P F D A S A T D N M R R L V Q H A G V Q : H H L M L P R Q T T - G G L Y N M L V . . . . . . 12743 CCCTGGTCACATTTATCCTCTAGCAATATTGTGCCATGATATTATGCCCCCTCCCGCCCA P W S H L S S S N I V P - Y Y A P S R P P G H I Y P L A I L C H D I M P P P A Q S L V T F I L - Q Y C A M I L C P L P P . : . . . . . 12683 G : GTTGAGAAAAATATCGGAGAGAAAAGAGTTGTATCTTTTCATGGAGCTGGCATATCTGT : G - E K Y R R E K S C I F S W S W H I C : V E K N I G E K R V V S F H G A G I S V R : L R K I S E R K E L Y L F M E L A Y L . . . . . . : 12548 GGCACCCAAAATTGATTTTCATGAGGTTGCTGGTGCTTTGGAGGACCCTGAG : GCTAAGAT G T Q N - F S - G C W C F G G P - : G - D A P K I D F H E V A G A L E D P E : A K M W H P K L I F M R L L V L W R T L R : L R . . . . . . 11232 GGTATATACAAAGGCAATTTATGATTCTGTAAGCCAGCAGTATAATGTGCTAAATTCTGC G I Y K G N L - F C K P A V - C A K F C V Y T K A I Y D S V S Q Q Y N V L N S A W Y I Q R Q F M I L - A S S I M C - I L . . . . . . 11172 TATACATGGCAAACAAGGACTGGAGGCTTCAATACCTAGTGTTTCATTGTCACAACCATG Y T W Q T R T G G F N T - C F I V T T M I H G K Q G L E A S I P S V S L S Q P W L Y M A N K D W R L Q Y L V F H C H N H . . . . . . : 11112 GCAGTAGCTTCTCTTCCAACTTTATTTTTCATACCTTGTTGCTGTAGTCAG : TTTTGCAGA A V A S L P T L F F I P C C C S Q : F C R Q - L L F Q L Y F S Y L V A V V S : F A D G S S F S S N F I F H T L L L - S : V L Q . . . . . . 10949 TGTTTGTTTGGCAGTTACTATCAAATCACAAGGATTACACTCACAATCTTTCCACATACC C L F G S Y Y Q I T R I T L T I F P H T V C L A V T I K S Q G L H S Q S F H I P M F V W Q L L S N H K D Y T H N L S T Y . . . . . . 10889 ACGCTTGCATGTGGTTAGTCTCTGCGGAAAGTTGATACAAACAAAGTAATTCTTGAAGTT T L A C G - S L R K V D T N K V I L E V R L H V V S L C G K L I Q T K - F L K L H A C M W L V S A E S - Y K Q S N S - S . . . . . . 10829 ACAGCAAACATAATCTGAAGGATTTTTTTTTGGCAGGGTTAGATGATTCTTTTGACACGA T A N I I - R I F F W Q G - M I L L T R Q Q T - S E G F F F G R V R - F F - H E Y S K H N L K D F F L A G L D D S F D T . . . . . . 10769 ATGTACAGTTGCTTTACATTGTATTTGTATCAAATGTTAGATTCAAATTTGTTAGTAATG M Y S C F T L Y L Y Q M L D S N L L V M C T V A L H C I C I K C - I Q I C - - - N V Q L L Y I V F V S N V R F K F V S N . . . . . . 10709 ATAGCTTTCAAGTACTGTTATGACTTTCTAAGGTTTAGTGTTAGTAGCTATTCTAGATTG I A F K Y C Y D F L R F S V S S Y S R L - L S S T V M T F - G L V L V A I L D C D S F Q V L L - L S K V - C - - L F - I . . . . . . 10649 CTGCTCATCTTACCTTTGAAGTGGTAATCCAATTTGTTGGGAAATATAATATTTGATGCT L L I L P L K W - S N L L G N I I F D A C S S Y L - S G N P I C W E I - Y L M L A A H L T F E V V I Q F V G K Y N I - C . 10589 CTGCTA L L C S A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-1_PPS_1 (14915 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11106) (frame '2'; 603 bp, 201 residues) 1 GDRVITDPLC KPFSMGRNLL CVYSKKHMND DPELAEMKKR ANTRSLKEMA LLLRGGSKII 61 WIAPSGGRDR PDPVTKEWYP APFDASATDN MRRLVQHAGV PGHIYPLAIL CHDIMPPPAQ 121 VEKNIGEKRV VSFHGAGISV APKIDFHEVA GALEDPEAKM VYTKAIYDSV SQQYNVLNSA 181 IHGKQGLEAS IPSVSLSQPW Q- AGS-2 (14887 14866,14787 14677,14047 13969,12802 12683,12607 12151) SCR (e 1.000 d 0.025 a 0.729,e 0.982 d 1.000 a 0.987,e 1.000 d 0.999 a 1.000,e 1.000 d 0.979 a 0.928,e 0.931) Exon 1 14887 14866 ( 22 n); score: 1.000 Intron 1 14865 14788 ( 78 n); Pd: 0.025 Pa: 0.729 Exon 2 14787 14677 ( 111 n); score: 0.982 Intron 2 14676 14048 ( 629 n); Pd: 1.000 Pa: 0.987 Exon 3 14047 13969 ( 79 n); score: 1.000 Intron 3 13968 12803 (1166 n); Pd: 0.999 Pa: 1.000 Exon 4 12802 12683 ( 120 n); score: 1.000 Intron 4 12682 12608 ( 75 n); Pd: 0.979 Pa: 0.928 Exon 5 12607 12151 ( 457 n); score: 0.931 PGS (14887 14866,14787 14677,14047 13969,12802 12683,12607 12151) SGN-E546511- 3-phase translation of AGS-2 (-strand): . . . : . . . 14887 GCAAGCCATTCAGCATGGGAAG : GAATCTCCTGTGTGTTTATTCGAAAAAACATATGAATG A S H S A W E : G I S C V F I R K N I - M Q A I Q H G K : E S P V C L F E K T Y E - K P F S M G R : N L L C V Y S K K H M N . . . . . . 14749 ATGACCCCGAACTTGCTGAGATGAAAAAGAGAGCAAACACAAGAAGCTTGAAGGAGATGG M T P N L L R - K R E Q T Q E A - R R W - P R T C - D E K E S K H K K L E G D G D D P E L A E M K K R A N T R S L K E M . . : . . . . 14689 CTTTGCTATTGAG : GGGTGGATCAAAAATAATATGGATTGCTCCTAGTGGTGGAAGAGATA L C Y - : G V D Q K - Y G L L L V V E E I F A I E : G W I K N N M D C S - W W K R - A L L L R : G G S K I I W I A P S G G R D . . . . : . . 14000 GGCCAGACCCTGTTACAAAAGAATGGTATCCA : GCACCATTTGATGCTTCCGCGACAGACA G Q T L L Q K N G I Q : H H L M L P R Q T A R P C Y K R M V S : S T I - C F R D R Q R P D P V T K E W Y P : A P F D A S A T D . . . . . . 12774 ACATGAGGAGGCTTGTACAACATGCTGGTGTCCCTGGTCACATTTATCCTCTAGCAATAT T - G G L Y N M L V S L V T F I L - Q Y H E E A C T T C W C P W S H L S S S N I N M R R L V Q H A G V P G H I Y P L A I . . . . : . . 12714 TGTGCCATGATATTATGCCCCCTCCCGCCCAG : GTTGAGAAAAATATCGGAGAGAAAAGAG C A M I L C P L P P R : L R K I S E R K E V P - Y Y A P S R P : G - E K Y R R E K S L C H D I M P P P A Q : V E K N I G E K R . . . . . . 12579 TTGTATCTTTTCATGGAGCTGGCATATCTGTGGCACCCAAAATTGATTTTCATGAGGTTG L Y L F M E L A Y L W H P K L I F M R L C I F S W S W H I C G T Q N - F S - G C V V S F H G A G I S V A P K I D F H E V . . . . . . 12519 CTGGTGCTTTGGAGGACCCTGAGGTTAGTTTTTATGGGAAGTCCACTTTGGTTTAATACT L V L W R T L R L V F M G S P L W F N T W C F G G P - G - F L W E V H F G L I L A G A L E D P E V S F Y G K S T L V - Y . . . . . . 12459 TCAAATTATTGGAAGCTTTTCTTAAACTAAATTTGGCAGCCTAATGAGAGGTTTAGTGAT S N Y W K L F L N - I W Q P N E R F S D Q I I G S F S - T K F G S L M R G L V I F K L L E A F L K L N L A A - - E V - - . . . . . . 12399 ATTTGTTGGTGAACCTTTTGGGGGGGGGGGTCATTCTATTTAATAGAGAATGAAGGAGGA I C W - T F W G G G S F Y L I E N E G G F V G E P F G G G G H S I - - R M K E E Y L L V N L L G G G V I L F N R E - R R . . . . . . 12339 GAAGGGAAGTTGGACCAAACTCTTTCTCTTTCCTATTTGAGACCCAAATGAACAGCTAGT E G K L D Q T L S L S Y L R P K - T A S K G S W T K L F L F P I - D P N E Q L V R R E V G P N S F S F L F E T Q M N S - . . . . . . 12279 TGACCTTTGCTAAGAGGGGCGCAGGTTCAGCAGAAATTTTGATTCCTGCAGTTGAGCTTT - P L L R G A Q V Q Q K F - F L Q L S F D L C - E G R R F S R N F D S C S - A F L T F A K R G A G S A E I L I P A V E L . . . . . . 12219 TTCTTGTTGGAAAAGTTAAGAAGTAAAGCTCCAAAGGAACTTTCAATATGCAAATAAAAC F L L E K L R S K A P K E L S I C K - N S C W K S - E V K L Q R N F Q Y A N K T F L V G K V K K - S S K G T F N M Q I K . 12159 ATTCATCTA I H L F I H S S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-2_PPS_1 (14885 14866,14787 14677,14047 13969,12802 12683,12607 12464) (frame '0'; 471 bp, 157 residues) 1 KPFSMGRNLL CVYSKKHMND DPELAEMKKR ANTRSLKEMA LLLRGGSKII WIAPSGGRDR 61 PDPVTKEWYP APFDASATDN MRRLVQHAGV PGHIYPLAIL CHDIMPPPAQ VEKNIGEKRV 121 VSFHGAGISV APKIDFHEVA GALEDPEVSF YGKSTLV- AGS-3 (13345 12931) SCR (e 1.000) Exon 1 13345 12931 ( 415 n); score: 1.000 PGS (13345 12931) SGN-E232945+ PGS (13340 13123) SGN-E389722+ 3-phase translation of AGS-3 (-strand): . . . . . . 13345 GAATGTGATTGGCATTATTTGCCTGAACTTTAAATGAGAGTTAACTGTTCGTATCCAATT E C D W H Y L P E L - M R V N C S Y P I N V I G I I C L N F K - E L T V R I Q L M - L A L F A - T L N E S - L F V S N . . . . . . 13285 GGGATTTACATGGATACATGCTATGGTTCACTGCTTCTTCCTATTCTGTATGTTCAGCAA G I Y M D T C Y G S L L L P I L Y V Q Q G F T W I H A M V H C F F L F C M F S N W D L H G Y M L W F T A S S Y S V C S A . . . . . . 13225 TACACTTCTCCATTACACTTGCCTTGTGACAGTTCTAGGGTGATGTTGATAAGCGTGATA Y T S P L H L P C D S S R V M L I S V I T L L H Y T C L V T V L G - C - - A - - I H F S I T L A L - Q F - G D V D K R D . . . . . . 13165 ATATCTCTTCTTCTCCAGCATAGTTCTATGTATATGATGGGCAGTTAGTTTCAAAAGTTT I S L L L Q H S S M Y M M G S - F Q K F Y L F F S S I V L C I - W A V S F K S F N I S S S P A - F Y V Y D G Q L V S K V . . . . . . 13105 TGGTATTTATGCTTCGTCATGATGCTTAATTAAGAGCCATTTTTTTAACATTTAATTTTT W Y L C F V M M L N - E P F F - H L I F G I Y A S S - C L I K S H F F N I - F F L V F M L R H D A - L R A I F L T F N F . . . . . . 13045 TTTTCCAAAAGAGCCAGATCCATATAGGTAATATCAGTTAGTTAAGACGCAGCTAATTAT F S K R A R S I - V I S V S - D A A N Y F P K E P D P Y R - Y Q L V K T Q L I I F F Q K S Q I H I G N I S - L R R S - L . . . . . . 12985 TTTTCAATGAACAGGTGTTTGGTTTAGATAAACCATAATTGCCTTTAAAAGGCCA F S M N R C L V - I N H N C L - K A F Q - T G V W F R - T I I A F K R P F F N E Q V F G L D K P - L P L K G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-3_PPS_1 (13312 13118) (frame '1'; 192 bp, 64 residues) 1 MRVNCSYPIG IYMDTCYGSL LLPILYVQQY TSPLHLPCDS SRVMLISVII SLLLQHSSMY 61 MMGS- 3-phase translation of AGS-3 (+strand): . . . . . . 12931 TGGCCTTTTAAAGGCAATTATGGTTTATCTAAACCAAACACCTGTTCATTGAAAAATAAT W P F K G N Y G L S K P N T C S L K N N G L L K A I M V Y L N Q T P V H - K I I A F - R Q L W F I - T K H L F I E K - . . . . . . 12991 TAGCTGCGTCTTAACTAACTGATATTACCTATATGGATCTGGCTCTTTTGGAAAAAAAAA - L R L N - L I L P I W I W L F W K K K S C V L T N - Y Y L Y G S G S F G K K N L A A S - L T D I T Y M D L A L L E K K . . . . . . 13051 TTAAATGTTAAAAAAATGGCTCTTAATTAAGCATCATGACGAAGCATAAATACCAAAACT L N V K K M A L N - A S - R S I N T K T - M L K K W L L I K H H D E A - I P K L I K C - K N G S - L S I M T K H K Y Q N . . . . . . 13111 TTTGAAACTAACTGCCCATCATATACATAGAACTATGCTGGAGAAGAAGAGATATTATCA F E T N C P S Y T - N Y A G E E E I L S L K L T A H H I H R T M L E K K R Y Y H F - N - L P I I Y I E L C W R R R D I I . . . . . . 13171 CGCTTATCAACATCACCCTAGAACTGTCACAAGGCAAGTGTAATGGAGAAGTGTATTGCT R L S T S P - N C H K A S V M E K C I A A Y Q H H P R T V T R Q V - W R S V L L T L I N I T L E L S Q G K C N G E V Y C . . . . . . 13231 GAACATACAGAATAGGAAGAAGCAGTGAACCATAGCATGTATCCATGTAAATCCCAATTG E H T E - E E A V N H S M Y P C K S Q L N I Q N R K K Q - T I A C I H V N P N W - T Y R I G R S S E P - H V S M - I P I . . . . . . 13291 GATACGAACAGTTAACTCTCATTTAAAGTTCAGGCAAATAATGCCAATCACATTC D T N S - L S F K V Q A N N A N H I I R T V N S H L K F R Q I M P I T F G Y E Q L T L I - S S G K - C Q S H Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 23832 16429 AGS-1 (23832 23359,19640 19543,18512 18426,18279 18182,16485 16429) SCR (e 0.918 d 1.000 a 0.886,e 1.000 d 0.965 a 0.998,e 1.000 d 0.900 a 0.983,e 1.000 d 0.998 a 0.616,e 0.965) Exon 1 23832 23359 ( 474 n); score: 0.918 Intron 1 23358 19641 (3718 n); Pd: 1.000 Pa: 0.886 Exon 2 19640 19543 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 Pa: 0.998 Exon 3 18512 18426 ( 87 n); score: 1.000 Intron 3 18425 18280 ( 146 n); Pd: 0.900 Pa: 0.983 Exon 4 18279 18182 ( 98 n); score: 1.000 Intron 4 18181 16486 (1696 n); Pd: 0.998 Pa: 0.616 Exon 5 16485 16429 ( 57 n); score: 0.965 PGS (23612 23359,19640 19543,18512 18426,18279 18182,16485 16429) SGN-E318668+ PGS (23556 23359,19640 19543,18512 18426,18279 18183) SGN-E265448+ PGS (23832 23359,19640 19543,18512 18426,18279 18227) SGN-E546512+ PGS (23759 23359,19640 19543,18512 18426,18279 18270) SGN-E266538+ PGS (23555 23359,19640 19543,18512 18464) SGN-E265247+ PGS (23707 23501) SGN-E330180+ 3-phase translation of AGS-1 (-strand): . . . . . . 23832 AAAGCACGTGCTCGTTCCTGATAAAACACTCTCTCTCCCTCACAACACGCATATATTCAT K A R A R S - - N T L S P S Q H A Y I H K H V L V P D K T L S L P H N T H I F I S T C S F L I K H S L S L T T R I Y S . . . . . . 23772 TTCACTCCTCACTTTTTTTCTCGACCCTTTCTCTCTCTAAACCTCTCCATTCTGTGGTGG F T P H F F S R P F L S L N L S I L W W S L L T F F L D P F S L - T S P F C G G F H S S L F F S T L S L S K P L H S V V . . . . . . 23712 TGATGTTGATCCTCTCAGCGGCTTCGTCTTCTTCTTCTTCTTCTTCCTCCTTCATGCTTT - C - S S Q R L R L L L L L L P P S C F D V D P L S G F V F F F F F F L L H A F V M L I L S A A S S S S S S S S S F M L . . . . . . 23652 CTTCCGCTTCGTCTTCTTCTGCACGCATTCCGAGGCCGTTATCTTCATTTTCAACTTGTG L P L R L L L H A F R G R Y L H F Q L V F R F V F F C T H S E A V I F I F N L C S S A S S S S A R I P R P L S S F S T C . . . . . . 23592 TACCAGTAGTAGTAACAACTGTTTCTTCTGCAGCAACTTCGACGCTATTCCCGATTTCCT Y Q - - - Q L F L L Q Q L R R Y S R F P T S S S N N C F F C S N F D A I P D F L V P V V V T T V S S A A T S T L F P I S . . . . . . 23532 GTTTCGGTGTGAAATCGAGGACGGTTGGGATTCGGAAGCTACGGTGTGCCGTTTTTTGTG V S V - N R G R L G F G S Y G V P F F V F R C E I E D G W D S E A T V C R F L C C F G V K S R T V G I R K L R C A V F C . . . . . . 23472 CTTCGAAGGTACGTGGAATGGCAGAAATGATTGAAGATGCCATGACAGTTTCTGCTTCTG L R R Y V E W Q K - L K M P - Q F L L L F E G T W N G R N D - R C H D S F C F - A S K V R G M A E M I E D A M T V S A S . . . . . . : 23412 AGAGTCATGAGCTTCCGCAGTCCCGAGACTTCCTTGACGCACGCACTGGAGAAG : ACTTGC R V M S F R S P E T S L T H A L E K : T C E S - A S A V P R L P - R T H W R R : L A E S H E L P Q S R D F L D A R T G E : D L . . . . . . 19634 TATCTGCTGTTCGAAAAGCTGTGGAAGATGAAAAACTGCCACTGAATGTTGCTGAAGGAA Y L L F E K L W K M K N C H - M L L K E I C C S K S C G R - K T A T E C C - R N L S A V R K A V E D E K L P L N V A E G . . . . : . . 19574 TGGAGGAGTTGTATCAGAACTATCAGAATGCA : GTTTTACAAAGCGGCGTTCCCAAAGCAG W R S C I R T I R M Q : F Y K A A F P K Q G G V V S E L S E C : S F T K R R S Q S R M E E L Y Q N Y Q N A : V L Q S G V P K A . . . . . . : 18484 ATGAGGCCATTTTGTATAACATGGCTCTTGTATTCGACCGTGTTTTTGTGGATGTGAAG : G M R P F C I T W L L Y S T V F L W M - R : - G H F V - H G S C I R P C F C G C E : G D E A I L Y N M A L V F D R V F V D V K : . . . . . . 18278 ATCCTTTTGAATTCTCGCCGTATCATAAGGCCATTCGTGAACCTTTTGACTATTACAAGT I L L N S R R I I R P F V N L L T I T S S F - I L A V S - G H S - T F - L L Q V D P F E F S P Y H K A I R E P F D Y Y K . . . . : . . 18218 TTGGTCAAAATTATATCCGCCAGCTAGTTGATTTCAG : GAGCTCTTATGTTGGGAATATGT L V K I I S A S - L I S : G A L M L G I C W S K L Y P P A S - F Q : E L L C W E Y V F G Q N Y I R Q L V D F R : S S Y V G N M . . . . 16462 CAGTTTTCAGTGAAATGGCAGAGAAGCTTAAACA Q F S V K W Q R S L N S F Q - N G R E A - T S V F S E M A E K L K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-5_AGS-1_PPS_1 (23830 23359,19640 19543,18512 18426,18279 18182,16485 16431) (frame '0'; 810 bp, 270 residues) 1 STCSFLIKHS LSLTTRIYSF HSSLFFSTLS LSKPLHSVVV MLILSAASSS SSSSSSFMLS 61 SASSSSARIP RPLSSFSTCV PVVVTTVSSA ATSTLFPISC FGVKSRTVGI RKLRCAVFCA 121 SKVRGMAEMI EDAMTVSASE SHELPQSRDF LDARTGEDLL SAVRKAVEDE KLPLNVAEGM 181 EELYQNYQNA VLQSGVPKAD EAILYNMALV FDRVFVDVKD PFEFSPYHKA IREPFDYYKF 241 GQNYIRQLVD FRSSYVGNMS VFSEMAEKLK PGL 6 (- strand): 24742 24477 AGS-1 (24742 24477) SCR (e 0.763) Exon 1 24742 24477 ( 266 n); score: 0.763 PGS (24742 24477) SGN-E540411+ 3-phase translation of AGS-1 (-strand): . . . . . . 24742 TCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCT S Q P M P E I S E T H L Y Y T K V L L P L N L C P K S Q R H T Y T I L R S Y Y L S T Y A R N L R D T L I L Y - G P I T . . . . . . 24682 CCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCTTACGTGGCACTATCTTAT P E L I L L I I F Y P F L A Y V A L S Y L N L F Y - - F F T P F - L T W H Y L M S - T Y F I N N F L P L F S L R G T I L . . . . . . 24622 GGACCCAACGATGATTGACTTTTTTTTCGAACTAGTGCCACATATGCTAAAAAGGGGTAG G P N D D - L F F R T S A T Y A K K G - D P T M I D F F F E L V P H M L K R G R W T Q R - L T F F S N - C H I C - K G V . . . . . . 24562 AAAATTACATATGAAATAAGTTTAGGGGTAATAGGACATTAGTATAGTATAAGTGTTTCT K I T Y E I S L G V I G H - Y S I S V S K L H M K - V - G - - D I S I V - V F L E N Y I - N K F R G N R T L V - Y K C F . . . 24502 ATGAGATTTCAGGCATAAGTTGAGGG M R F Q A - V E - D F R H K L R Y E I S G I S - G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 24477 CCCTCAACTTATGCCTGAAATCTCATAGAAACACTTATACTATACTAATGTCCTATTACC P S T Y A - N L I E T L I L Y - C P I T P Q L M P E I S - K H L Y Y T N V L L P L N L C L K S H R N T Y T I L M S Y Y . . . . . . 24537 CCTAAACTTATTTCATATGTAATTTTCTACCCCTTTTTAGCATATGTGGCACTAGTTCGA P K L I S Y V I F Y P F L A Y V A L V R L N L F H M - F S T P F - H M W H - F E P - T Y F I C N F L P L F S I C G T S S . . . . . . 24597 AAAAAAAGTCAATCATCGTTGGGTCCATAAGATAGTGCCACGTAAGCTAAAAAGGGGTAA K K S Q S S L G P - D S A T - A K K G - K K V N H R W V H K I V P R K L K R G K K K K S I I V G S I R - C H V S - K G V . . . . . . 24657 AAAATTATTAATAAAATAAGTTCAGGAGGTAATAGGACCTTAGTATAGTATAAGTGTGTC K I I N K I S S G G N R T L V - Y K C V K L L I K - V Q E V I G P - Y S I S V S K N Y - - N K F R R - - D L S I V - V C . . . 24717 TCTGAGATTTCGGGCATAGGTTGAGA S E I S G I G - L R F R A - V E L - D F G H R L R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 31332 27540 AGS-1 (31332 31211,31086 31039,28327 28240,28156 28113,27847 27540) SCR (e 1.000 d 0.968 a 0.918,e 1.000 d 0.999 a 0.926,e 1.000 d 0.915 a 0.983,e 1.000 d 0.999 a 0.992,e 1.000) Exon 1 31332 31211 ( 122 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 Pa: 0.918 Exon 2 31086 31039 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 Pa: 0.926 Exon 3 28327 28240 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 Pa: 0.983 Exon 4 28156 28113 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 Pa: 0.992 Exon 5 27847 27540 ( 308 n); score: 1.000 PGS (31326 31211,31086 31039,28327 28240,28156 28113,27847 27540) SGN-E309211+ PGS (31330 31211,31086 31039,28327 28240,28156 28113,27847 27590) SGN-E321785+ PGS (31329 31211,31086 31039,28327 28240,28156 28113,27847 27590) SGN-E339161+ PGS (31229 31211,31086 31039,28327 28240,28156 28113,27847 27591) SGN-E341634+ PGS (31332 31211,31086 31039,28327 28240,28156 28113,27847 27680) SGN-E309232+ PGS (31301 31211,31086 31039,28327 28240,28156 28113,27847 27709) SGN-E309836+ 3-phase translation of AGS-1 (-strand): . . . . . . 31332 TTGAGGTCACACAAGAGAACTGAAGAGTGACAAAAATGGCAAAGTCGTCGGCGACCAAAG L R S H K R T E E - Q K W Q S R R R P K - G H T R E L K S D K N G K V V G D Q R E V T Q E N - R V T K M A K S S A T K . . . . . . 31272 ACGCCCAAGCTCTTTTCCATTCTCTCCGTTCTGCTTATGCCGCAACTCCGACGAATCTCA T P K L F S I L S V L L M P Q L R R I S R P S S F P F S P F C L C R N S D E S Q D A Q A L F H S L R S A Y A A T P T N L . : . . . . : . 31212 AG : ATCATTGATCTATATGTCATCTTTGCGATCTCTACTGCCTTAATTCAG : GTGGTATACA R : S L I Y M S S L R S L L P - F R : W Y T : D H - S I C H L C D L Y C L N S : G G I H K : I I D L Y V I F A I S T A L I Q : V V Y . . . . . . 28317 TGGCTATTGTTGGATCATTTCCATTCAACTCTTTTCTCTCTGGGGTGCTTTCTTGTATTG W L L L D H F H S T L F S L G C F L V L G Y C W I I S I Q L F S L W G A F L Y W M A I V G S F P F N S F L S G V L S C I . . : . . . . 28257 GCACAGCAGTCCTTGCTG : TTTGTCTTCGGATCCAAGTAAACAAAGAAAACAAGGAATTCA A Q Q S L L : F V F G S K - T K K T R N S H S S P C C : L S S D P S K Q R K Q G I Q G T A V L A : V C L R I Q V N K E N K E F . : . . . . . 28114 AG : GATTTGCCTCCGGAACGTGCTTTTGCAGATTTTGTTCTCTGCAATTTAGTGCTCCATT R : I C L R N V L L Q I L F S A I - C S I : G F A S G T C F C R F C S L Q F S A P F K : D L P P E R A F A D F V L C N L V L H . . . . . . 27789 TGGTGATCATGAACTTTCTTGGCTAGATTGAGGCACCAAATCTTGAAAATGTTGCTCTTA W - S - T F L A R L R H Q I L K M L L L G D H E L S W L D - G T K S - K C C S Y L V I M N F L G - I E A P N L E N V A L . . . . . . 27729 CAAATCTTGGTGATTTTTATGTAAGAATAATATAGAGTCAATCGTAAAGGATTTTGTTAG Q I L V I F M - E - Y R V N R K G F C - K S W - F L C K N N I E S I V K D F V R T N L G D F Y V R I I - S Q S - R I L L . . . . . . 27669 GCTTTCGGAAATATTAAGTTTCTCATGCATGAAACTATTTTACATTTATGAATCTTATAT A F G N I K F L M H E T I L H L - I L Y L S E I L S F S C M K L F Y I Y E S Y M G F R K Y - V S H A - N Y F T F M N L I . . . . . . 27609 GAGTATTAGTAAGTAGACAATCTTTGGCCATTCTGAGTTCTATAGCCCAAAAAGGAGCCA E Y - - V D N L W P F - V L - P K K E P S I S K - T I F G H S E F Y S P K R S Q - V L V S R Q S L A I L S S I A Q K G A . 27549 AACTTTTTCG N F F T F S K L F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-7_AGS-1_PPS_1 (31309 31211,31086 31039,28327 28240,28156 28113,27847 27764) (frame '0'; 360 bp, 120 residues) 1 RVTKMAKSSA TKDAQALFHS LRSAYAATPT NLKIIDLYVI FAISTALIQV VYMAIVGSFP 61 FNSFLSGVLS CIGTAVLAVC LRIQVNKENK EFKDLPPERA FADFVLCNLV LHLVIMNFLG 121 - PGL 8 (- strand): 35379 33596 AGS-1 (35379 35140,34038 33978,33619 33596) SCR (e 0.715 d 0.000 a 0.000,e 0.631 d 0.900 a 0.000,e 0.792) Exon 1 35379 35140 ( 240 n); score: 0.715 Intron 1 35139 34039 (1101 n); Pd: 0.000 Pa: 0.000 Exon 2 34038 33978 ( 61 n); score: 0.631 Intron 2 33977 33620 ( 358 n); Pd: 0.900 Pa: 0.000 Exon 3 33619 33596 ( 24 n); score: 0.792 PGS (35379 35140,34038 33978,33619 33596) SGN-E539636+ PGS (35331 35140,34038 33978,33619 33596) SGN-E539633- PGS (35379 35140) SGN-E285125+ 3-phase translation of AGS-1 (-strand): . . . . . . 35379 AAAATTAAAATTCAATAAAAAATTATAAAATCATTAAAGAATAATGACTCAATATCATAT K I K I Q - K I I K S L K N N D S I S Y K L K F N K K L - N H - R I M T Q Y H I N - N S I K N Y K I I K E - - L N I I . . . . . . 35319 ACTTCCTTCGTTCAGAATTGTTTGTCATGTTGCGCTTATTAAAAGTCAATTTGACTAATT T S F V Q N C L S C C A Y - K S I - L I L P S F R I V C H V A L I K S Q F D - F Y F L R S E L F V M L R L L K V N L T N . . . . . . 35259 TTTAAAGGTAAATTAGATAACATTAATTCGATATTTTAAACAAAAAAAAAATTCTAAAAC F K G K L D N I N S I F - T K K K F - N L K V N - I T L I R Y F K Q K K N S K T F - R - I R - H - F D I L N K K K I L K . . . . . . : 35199 TATATGAAAAGTACTATAAATTAATTTTTTTTACATATTAATATGATAAAAAAATACATC : Y M K S T I N - F F L H I N M I K K Y I : I - K V L - I N F F Y I L I - - K N T S : L Y E K Y Y K L I F F T Y - Y D K K I H : . . . . . . 34038 TTATATTTGTAATTTTTTAAAAAAATATATAAATATATGTAGAGAATATTGAATTTCGTA L Y L - F F K K I Y K Y M - R I L N F V Y I C N F L K K Y I N I C R E Y - I S - L I F V I F - K N I - I Y V E N I E F R . : . . 33978 A : CAATATAGTTATTTCAACAATTTA : T I - L F Q Q F : Q Y S Y F N N L N : N I V I S T I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (35222 35084) SCR (e 0.849) Exon 1 35222 35084 ( 139 n); score: 0.849 PGS (35222 35084) SGN-E208987- 3-phase translation of AGS-2 (-strand): . . . . . . 35222 AAACAAAAAAAAAATTCTAAAACTATATGAAAAGTACTATAAATTAATTTTTTTTACATA K Q K K N S K T I - K V L - I N F F Y I N K K K I L K L Y E K Y Y K L I F F T Y T K K K F - N Y M K S T I N - F F L H . . . . . . 35162 TTAATATGATAAAAAAATACATCTTAAAACATTAGTCAAAGTTTTTATAGTTTGAATCTA L I - - K N T S - N I S Q S F Y S L N L - Y D K K I H L K T L V K V F I V - I - I N M I K K Y I L K H - S K F L - F E S . . 35102 AAAATAGAAACCATGACAA K I E T M T K - K P - Q K N R N H D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 35084 TTGTCATGGTTTCTATTTTTAGATTCAAACTATAAAAACTTTGACTAATGTTTTAAGATG L S W F L F L D S N Y K N F D - C F K M C H G F Y F - I Q T I K T L T N V L R C V M V S I F R F K L - K L - L M F - D . . . . . . 35144 TATTTTTTTATCATATTAATATGTAAAAAAAATTAATTTATAGTACTTTTCATATAGTTT Y F F I I L I C K K N - F I V L F I - F I F L S Y - Y V K K I N L - Y F S Y S F V F F Y H I N M - K K L I Y S T F H I V . . 35204 TAGAATTTTTTTTTTGTTT - N F F F V R I F F L F L E F F F C Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 36671 41597 AGS-1 (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41597) SCR (e 1.000 d 0.995 a 0.862,e 1.000 d 0.901 a 1.000,e 1.000 d 0.917 a 0.957,e 1.000 d 0.879 a 0.996,e 1.000 d 0.994 a 0.996,e 1.000 d 0.973 a 1.000,e 1.000) Exon 1 36671 36892 ( 222 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 Pa: 0.862 Exon 2 38347 38446 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 Pa: 1.000 Exon 3 38563 38651 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 Pa: 0.957 Exon 4 38835 38890 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 Pa: 0.996 Exon 5 39811 39957 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 Pa: 0.996 Exon 6 40682 40804 ( 123 n); score: 1.000 Intron 6 40805 41017 ( 213 n); Pd: 0.973 Pa: 1.000 Exon 7 41018 41597 ( 580 n); score: 1.000 PGS (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) SGN-E372517+ PGS (36671 36892,38347 38446,38563 38651,38835 38890,39811 39914) SGN-E294142+ PGS (36671 36892,38347 38446,38563 38651,38835 38890,39811 39853) SGN-E268176+ PGS (36673 36892,38347 38446,38563 38651,38835 38890,39811 39903) SGN-E304659+ PGS (36677 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40797) SGN-E210773+ PGS (36684 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40734) SGN-E277026+ PGS (36684 36892,38347 38446,38563 38651,38835 38890,39811 39927) SGN-E276316+ PGS (36684 36892,38347 38446,38563 38610) SGN-E291225+ PGS (36741 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40733) SGN-E254372+ PGS (36750 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40780) SGN-E329834+ PGS (36750 36892,38347 38446,38563 38651,38835 38890,39811 39859) SGN-E330659+ PGS (36757 36892,38347 38446,38563 38651,38835 38890,39811 39896) SGN-E325987+ PGS (39894 39957,40682 40804,41018 41492) SGN-E372516- PGS (39907 39957,40682 40804,41018 41597) SGN-E342930- PGS (40738 40804,41018 41393) SGN-E345999+ PGS (40746 40804,41018 41427) SGN-E337896+ PGS (41069 41427) SGN-E237162- PGS (41239 41427) SGN-E236725- 3-phase translation of AGS-1 (+strand): . . . . . . 36671 CAAAGTTCAACTATTGCCTTTGCTATTCATTTTCTTCCATTGATTAGATAACTTCTCAAT Q S S T I A F A I H F L P L I R - L L N K V Q L L P L L F I F F H - L D N F S I K F N Y C L C Y S F S S I D - I T S Q . . . . . . 36731 CTCATCTCTGTGAACTGTGGAAGAGAAAACTATGGCGACTTTCTCAAACATCGGTGCCAT L I S V N C G R E N Y G D F L K H R C H S S L - T V E E K T M A T F S N I G A I S H L C E L W K R K L W R L S Q T S V P . . . . . . 36791 TTGCAAAGTTACATCAGCTCCTTCTCTTAGCAGCACTAGTAGTAGAGCTCTCTTTCCTAC L Q S Y I S S F S - Q H - - - S S L S Y C K V T S A P S L S S T S S R A L F P T F A K L H Q L L L L A A L V V E L S F L . . . . . : . 36851 GACTTTGCGCAGTTACAGTCATTCACAAGTCTCTCGCTCTCG : TTCTTGCCGACTTTGTAT D F A Q L Q S F T S L S L S : F L P T L Y T L R S Y S H S Q V S R S R : S C R L C I R L C A V T V I H K S L A L : V L A D F V . . . . . . 38365 TAAAAGCAGTTATGCCGAAGCTGTCAGAGGGGATCCTAACTCGGATGCAATTGATGTTGT - K Q L C R S C Q R G S - L G C N - C C K S S Y A E A V R G D P N S D A I D V V L K A V M P K L S E G I L T R M Q L M L . . . : . . . 38425 AGCAGATGTTAAGACTGAACGA : ATTGTAGTTATAGGAGGCAGCGGCTTTGTTGGCTCTGC S R C - D - T : N C S Y R R Q R L C W L C A D V K T E R : I V V I G G S G F V G S A - Q M L R L N E : L - L - E A A A L L A L . . . . . . : 38601 AATATGCAAGGCCGCAGTGTCAGAGGGTATAGAGGTCATAAGTCTGAGCAG : ATCAGGGCG N M Q G R S V R G Y R G H K S E Q : I R A I C K A A V S E G I E V I S L S R : S G R Q Y A R P Q C Q R V - R S - V - A : D Q G . . . . . : . 38844 TCCCTCTAAATCAGACTCATGGGTAGATCAAGTCACTTGGATAACAG : GAGATGTTTTCTA S L - I R L M G R S S H L D N R : R C F L P S K S D S W V D Q V T W I T : G D V F Y V P L N Q T H G - I K S L G - Q : E M F S . . . . . . 39824 TGCAAACTGGGATGAAGTACTTATTGGGGCTACAGCAGTTGTTTCAACTTTAGGAGGTTT C K L G - S T Y W G Y S S C F N F R R F A N W D E V L I G A T A V V S T L G G F M Q T G M K Y L L G L Q Q L F Q L - E V . . . . . . 39884 TGGTTCTGATGAACAAATGCTTAGGATCAATGGTGAAGCTAATGTTGTGGCTGTCAATGC W F - - T N A - D Q W - S - C C G C Q C G S D E Q M L R I N G E A N V V A V N A L V L M N K C L G S M V K L M L W L S M . . : . . . . 39944 TGCTAAAGAATATG : GGACCCCTAAGTTCATATTGATTTCTGTGCATGATTACAATCTACC C - R I W : D P - V H I D F C A - L Q S T A K E Y : G T P K F I L I S V H D Y N L P L L K N M : G P L S S Y - F L C M I T I Y . . . . . . 40728 ATCATTCCTCCAATCAAGTTACTTCATAGGGAAAAGAAAAGCAGAATCAGAAGTTCTTTC I I P P I K L L H R E K K S R I R S S F S F L Q S S Y F I G K R K A E S E V L S H H S S N Q V T S - G K E K Q N Q K F F . . : . . . . 40788 CAAATTCCCTAGCTCAG : GTGTGGTTCTTAGACCTGCCTTTATATATGGGAAGAGGAAGGT Q I P - L R : C G S - T C L Y I W E E E G K F P S S : G V V L R P A F I Y G K R K V P N S L A Q : V W F L D L P L Y M G R G R . . . . . . 41061 TGACGGCTTCGAGATCCCTCTAGATTTGATTGGAGAACCTCTTGAAAAGTTATTACGTGC - R L R D P S R F D W R T S - K V I T C D G F E I P L D L I G E P L E K L L R A L T A S R S L - I - L E N L L K S Y Y V . . . . . . 41121 AACAGAGAGCTTCACTAAACCATTGAACTCGTTGCCAGCATCCGATTTAATTCTTGCCCC N R E L H - T I E L V A S I R F N S C P T E S F T K P L N S L P A S D L I L A P Q Q R A S L N H - T R C Q H P I - F L P . . . . . . 41181 TCCTGTTAGCGTGGACGACGTTGCTTATGCAGTGATAAATGCTGTTAAGGATGACGACTG S C - R G R R C L C S D K C C - G - R L P V S V D D V A Y A V I N A V K D D D C L L L A W T T L L M Q - - M L L R M T T . . . . . . 41241 TTTTGGCATTTTTACCATCAACCAAATCAAAGAAGCAGCAGCAGGGGTTAAGGTGTAAGA F W H F Y H Q P N Q R S S S R G - G V R F G I F T I N Q I K E A A A G V K V - D V L A F L P S T K S K K Q Q Q G L R C K . . . . . . 41301 TAAGGTCCACATCAAAAAGAAAAATGACATACATCTTGTAACAAAATTATATATGTAGAA - G P H Q K E K - H T S C N K I I Y V E K V H I K K K N D I H L V T K L Y M - N I R S T S K R K M T Y I L - Q N Y I C R . . . . . . 41361 CATGTATCATGTCATACAAAACTCTTGCTTATGATATCCATAGTATAATGGACCTTTTGA H V S C H T K L L L M I S I V - W T F - M Y H V I Q N S C L - Y P - Y N G P F D T C I M S Y K T L A Y D I H S I M D L L . . . . . . 41421 TGCTAAAATAGCCTATTTTCATCCTGTATTTACTAGTAAGAAGAGCAAATCAATACTCCA C - N S L F S S C I Y - - E E Q I N T P A K I A Y F H P V F T S K K S K S I L H M L K - P I F I L Y L L V R R A N Q Y S . . . . . . 41481 TCTTGCAAAACACCATGTGTTGGAAGTCTTGGAGATTGAAATTATAGCAGTGAATTGAAC S C K T P C V G S L G D - N Y S S E L N L A K H H V L E V L E I E I I A V N - T I L Q N T M C W K S W R L K L - Q - I E . . . . . . 41541 CGCGCTTCGCGCGGACATAATTATTGTTAAAGTAGTTCTTTTAGAAGACTTAAGTAA R A S R G H N Y C - S S S F R R L K - A L R A D I I I V K V V L L E D L S P R F A R T - L L L K - F F - K T - V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-9_AGS-1_PPS_1 (36744 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41298) (frame '2'; 942 bp, 314 residues) 1 TVEEKTMATF SNIGAICKVT SAPSLSSTSS RALFPTTLRS YSHSQVSRSR SCRLCIKSSY 61 AEAVRGDPNS DAIDVVADVK TERIVVIGGS GFVGSAICKA AVSEGIEVIS LSRSGRPSKS 121 DSWVDQVTWI TGDVFYANWD EVLIGATAVV STLGGFGSDE QMLRINGEAN VVAVNAAKEY 181 GTPKFILISV HDYNLPSFLQ SSYFIGKRKA ESEVLSKFPS SGVVLRPAFI YGKRKVDGFE 241 IPLDLIGEPL EKLLRATESF TKPLNSLPAS DLILAPPVSV DDVAYAVINA VKDDDCFGIF 301 TINQIKEAAA GVKV- PGL 10 (+ strand): 42875 43434 AGS-1 (42875 43434) SCR (e 0.871) Exon 1 42875 43434 ( 560 n); score: 0.871 PGS (42875 43434) SGN-E578305- 3-phase translation of AGS-1 (+strand): . . . . . . 42875 CATCCATTAAACTTTACCTTAAAATCTTGGAGCCACCGCTACTCTAATCAATAGACATTT H P L N F T L K S W S H R Y S N Q - T F I H - T L P - N L G A T A T L I N R H F S I K L Y L K I L E P P L L - S I D I . . . . . . 42935 TCAATAGAGACTACTAACAGAAGCACTATGCGGAAACCTATATACTCCTAATCAATTTGT S I E T T N R S T M R K P I Y S - S I C Q - R L L T E A L C G N L Y T P N Q F V F N R D Y - Q K H Y A E T Y I L L I N L . . . . . . 42995 TTCTATGCACTATGTCGATACAATAGGTAAATAAAGTTCAATAAAAGAGCTAGCAAATAC F Y A L C R Y N R - I K F N K R A S K Y S M H Y V D T I G K - S S I K E L A N T F L C T M S I Q - V N K V Q - K S - Q I . . . . . . 43055 TAAAAAAAATAAAAAATTTCTGTCCAGTAAAATTTTTTCAGCTGTATTCAGGAACTAAGC - K K - K I S V Q - N F F S C I Q E L S K K N K K F L S S K I F S A V F R N - A L K K I K N F C P V K F F Q L Y S G T K . . . . . . 43115 TAAACTTTCAGTTAAGTTTGAGTGAATTGAGTAACTTCAATCCAAACTTTATATGTATCT - T F S - V - V N - V T S I Q T L Y V S K L S V K F E - I E - L Q S K L Y M Y L L N F Q L S L S E L S N F N P N F I C I . . . . . . 43175 TAATAAATCTATCAACTCTACAAATTATTGATTAAATTAAAATCCAATAATATAAAAGAA - - I Y Q L Y K L L I K L K S N N I K E N K S I N S T N Y - L N - N P I I - K N L I N L S T L Q I I D - I K I Q - Y K R . . . . . . 43235 TCAAAATTTGAAACTCATAAGCTTGAAATTGACTATATAGACTCTCTTCGTCCACTATCA S K F E T H K L E I D Y I D S L R P L S Q N L K L I S L K L T I - T L F V H Y Q I K I - N S - A - N - L Y R L S S S T I . . . . . . 43295 AAATTTGTCATGCTTGTCATTTTTAGAGTCAATTTATAAAAATTTTGACTAACATTTTAC K F V M L V I F R V N L - K F - L T F Y N L S C L S F L E S I Y K N F D - H F T K I C H A C H F - S Q F I K I L T N I L . . . . . . 43355 AATATATTTTTTCATCATATTGCTATGCAAACAATTGCTATGTATAGTACTTTCCGTATA N I F F H H I A M Q T I A M Y S T F R I I Y F F I I L L C K Q L L C I V L S V - Q Y I F S S Y C Y A N N C Y V - Y F P Y . . 43415 GTTTTTGAATATCTGAATTT V F E Y L N F L N I - I S F - I S E F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 43434 AAATTCAGATATTCAAAAACTATACGGAAAGTACTATACATAGCAATTGTTTGCATAGCA K F R Y S K T I R K V L Y I A I V C I A N S D I Q K L Y G K Y Y T - Q L F A - Q I Q I F K N Y T E S T I H S N C L H S . . . . . . 43374 ATATGATGAAAAAATATATTGTAAAATGTTAGTCAAAATTTTTATAAATTGACTCTAAAA I - - K N I L - N V S Q N F Y K L T L K Y D E K I Y C K M L V K I F I N - L - K N M M K K Y I V K C - S K F L - I D S K . . . . . . 43314 ATGACAAGCATGACAAATTTTGATAGTGGACGAAGAGAGTCTATATAGTCAATTTCAAGC M T S M T N F D S G R R E S I - S I S S - Q A - Q I L I V D E E S L Y S Q F Q A N D K H D K F - - W T K R V Y I V N F K . . . . . . 43254 TTATGAGTTTCAAATTTTGATTCTTTTATATTATTGGATTTTAATTTAATCAATAATTTG L - V S N F D S F I L L D F N L I N N L Y E F Q I L I L L Y Y W I L I - S I I C L M S F K F - F F Y I I G F - F N Q - F . . . . . . 43194 TAGAGTTGATAGATTTATTAAGATACATATAAAGTTTGGATTGAAGTTACTCAATTCACT - S - - I Y - D T Y K V W I E V T Q F T R V D R F I K I H I K F G L K L L N S L V E L I D L L R Y I - S L D - S Y S I H . . . . . . 43134 CAAACTTAACTGAAAGTTTAGCTTAGTTCCTGAATACAGCTGAAAAAATTTTACTGGACA Q T - L K V - L S S - I Q L K K F Y W T K L N - K F S L V P E Y S - K N F T G Q S N L T E S L A - F L N T A E K I L L D . . . . . . 43074 GAAATTTTTTATTTTTTTTAGTATTTGCTAGCTCTTTTATTGAACTTTATTTACCTATTG E I F Y F F - Y L L A L L L N F I Y L L K F F I F F S I C - L F Y - T L F T Y C R N F L F F L V F A S S F I E L Y L P I . . . . . . 43014 TATCGACATAGTGCATAGAAACAAATTGATTAGGAGTATATAGGTTTCCGCATAGTGCTT Y R H S A - K Q I D - E Y I G F R I V L I D I V H R N K L I R S I - V S A - C F V S T - C I E T N - L G V Y R F P H S A . . . . . . 42954 CTGTTAGTAGTCTCTATTGAAAATGTCTATTGATTAGAGTAGCGGTGGCTCCAAGATTTT L L V V S I E N V Y - L E - R W L Q D F C - - S L L K M S I D - S S G G S K I L S V S S L Y - K C L L I R V A V A P R F . . 42894 AAGGTAAAGTTTAATGGATG K V K F N G R - S L M D - G K V - W M Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 44815 44022 AGS-1 (44815 44022) SCR (e 0.907) Exon 1 44815 44022 ( 794 n); score: 0.907 PGS (44439 44022) SGN-E392506- PGS (44806 44194) SGN-E392507+ PGS (44806 44240) SGN-E236391+ PGS (44806 44311) SGN-E237964+ PGS (44815 44421) SGN-E242513+ PGS (44806 44531) SGN-E239544+ 3-phase translation of AGS-1 (-strand): . . . . . . 44815 AACGTCTACGCAGAAGTCCCATCACATCATCCTCTTTGCGAGCAAAAACTCCATCTCCAG N V Y A E V P S H H P L C E Q K L H L Q T S T Q K S H H I I L F A S K N S I S R R L R R S P I T S S S L R A K T P S P . . . . . . 44755 GTATACCTCAAAACTTATCCTATTTTTGTTTTCCTTTTTTCTGGTTGTAATTTCAACCTT V Y L K T Y P I F V F L F S G C N F N L Y T S K L I L F L F S F F L V V I S T F G I P Q N L S Y F C F P F F W L - F Q P . . . . . . 44695 TTCTTCCTTCTATGCTACTGTAATTTGATTATGAATTATCTAGCATTGGAACAAAAATGA F F L L C Y C N L I M N Y L A L E Q K - S S F Y A T V I - L - I I - H W N K N D F L P S M L L - F D Y E L S S I G T K M . . . . . . 44635 TTTGCTAATATTACTCTGATAAAATTATATTCTTTTTCTGGCAGAAGTTCACAATGTTTT F A N I T L I K L Y S F S G R S S Q C F L L I L L - - N Y I L F L A E V H N V L I C - Y Y S D K I I F F F W Q K F T M F . . . . . . 44575 GCCAAGTTCTTTCTATTGGAAGTGTGTCAGTTTTTATGGAATATTCGCACTGAAGCCCAG A K F F L L E V C Q F L W N I R T E A Q P S S F Y W K C V S F Y G I F A L K P S C Q V L S I G S V S V F M E Y S H - S P . . . . . . 44515 TTATATATGGACTCATACATAATAAGGCTCCATTGGTACGGAAGTACTCTACCAAAGATT L Y M D S Y I I R L H W Y G S T L P K I Y I W T H T - - G S I G T E V L Y Q R F V I Y G L I H N K A P L V R K Y S T K D . . . . . . 44455 TGAACCAAGACCTCTGTTTACAAGGATAGCAATCCCGTCCACAACATCGCATCTTGCTTA - T K T S V Y K D S N P V H N I A S C L E P R P L F T R I A I P S T T S H L A Y L N Q D L C L Q G - Q S R P Q H R I L L . . . . . . 44395 TAAGTTTTTGCAGTGAGTATATGTAAATATATGTGTATAGTCATTTTTCCTTTTACAAAA - V F A V S I C K Y M C I V I F P F T K K F L Q - V Y V N I C V - S F F L L Q N I S F C S E Y M - I Y V Y S H F S F Y K . . . . . . 44335 TACATAGTAATATTTTAGTATAAGGATTGTAGTTTATTACTAAATTGATATTGTAATGTC Y I V I F - Y K D C S L L L N - Y C N V T - - Y F S I R I V V Y Y - I D I V M S I H S N I L V - G L - F I T K L I L - C . . . . . . 44275 AAATTTGGAACTAATGAAGCCAAAGTTTATATCAACTCCGTCTAACAGAGTATCTTTGAG K F G T N E A K V Y I N S V - Q S I F E N L E L M K P K F I S T P S N R V S L R Q I W N - - S Q S L Y Q L R L T E Y L - . . . . . . 44215 AAGAAAAAGTTAAATCACGTGAAGCACAAGATTGTTGATGCTGAGCACTAGGAAGAGATA K K K L N H V K H K I V D A E H - E E I R K S - I T - S T R L L M L S T R K R - E E K V K S R E A Q D C - C - A L G R D . . . . . . 44155 ACTTCTTGATGATATAGATTTTATACAAAGAGAACTAAGGTTGAGCATGCTCCGTTGCCC T S - - Y R F Y T K R T K V E H A P L P L L D D I D F I Q R E L R L S M L R C P N F L M I - I L Y K E N - G - A C S V A . . . . . . 44095 ATGGATGAAATAAGGATGCTGCTGGAAGTGGTCGAATATCAGCAATATTATCGCAATGCA M D E I R M L L E V V E Y Q Q Y Y R N A W M K - G C C W K W S N I S N I I A M Q H G - N K D A A G S G R I S A I L S Q C . . 44035 ACAGGAAAGGAGAA T G K E Q E R R N R K G E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 44022 TTCTCCTTTCCTGTTGCATTGCGATAATATTGCTGATATTCGACCACTTCCAGCAGCATC F S F P V A L R - Y C - Y S T T S S S I S P F L L H C D N I A D I R P L P A A S L L S C C I A I I L L I F D H F Q Q H . . . . . . 44082 CTTATTTCATCCATGGGCAACGGAGCATGCTCAACCTTAGTTCTCTTTGTATAAAATCTA L I S S M G N G A C S T L V L F V - N L L F H P W A T E H A Q P - F S L Y K I Y P Y F I H G Q R S M L N L S S L C I K S . . . . . . 44142 TATCATCAAGAAGTTATCTCTTCCTAGTGCTCAGCATCAACAATCTTGTGCTTCACGTGA Y H Q E V I S S - C S A S T I L C F T - I I K K L S L P S A Q H Q Q S C A S R D I S S R S Y L F L V L S I N N L V L H V . . . . . . 44202 TTTAACTTTTTCTTCTCAAAGATACTCTGTTAGACGGAGTTGATATAAACTTTGGCTTCA F N F F F S K I L C - T E L I - T L A S L T F S S Q R Y S V R R S - Y K L W L H I - L F L L K D T L L D G V D I N F G F . . . . . . 44262 TTAGTTCCAAATTTGACATTACAATATCAATTTAGTAATAAACTACAATCCTTATACTAA L V P N L T L Q Y Q F S N K L Q S L Y - - F Q I - H Y N I N L V I N Y N P Y T K I S S K F D I T I S I - - - T T I L I L . . . . . . 44322 AATATTACTATGTATTTTGTAAAAGGAAAAATGACTATACACATATATTTACATATACTC N I T M Y F V K G K M T I H I Y L H I L I L L C I L - K E K - L Y T Y I Y I Y S K Y Y Y V F C K R K N D Y T H I F T Y T . . . . . . 44382 ACTGCAAAAACTTATAAGCAAGATGCGATGTTGTGGACGGGATTGCTATCCTTGTAAACA T A K T Y K Q D A M L W T G L L S L - T L Q K L I S K M R C C G R D C Y P C K Q H C K N L - A R C D V V D G I A I L V N . . . . . . 44442 GAGGTCTTGGTTCAAATCTTTGGTAGAGTACTTCCGTACCAATGGAGCCTTATTATGTAT E V L V Q I F G R V L P Y Q W S L I M Y R S W F K S L V E Y F R T N G A L L C M R G L G S N L W - S T S V P M E P Y Y V . . . . . . 44502 GAGTCCATATATAACTGGGCTTCAGTGCGAATATTCCATAAAAACTGACACACTTCCAAT E S I Y N W A S V R I F H K N - H T S N S P Y I T G L Q C E Y S I K T D T L P I - V H I - L G F S A N I P - K L T H F Q . . . . . . 44562 AGAAAGAACTTGGCAAAACATTGTGAACTTCTGCCAGAAAAAGAATATAATTTTATCAGA R K N L A K H C E L L P E K E Y N F I R E R T W Q N I V N F C Q K K N I I L S E - K E L G K T L - T S A R K R I - F Y Q . . . . . . 44622 GTAATATTAGCAAATCATTTTTGTTCCAATGCTAGATAATTCATAATCAAATTACAGTAG V I L A N H F C S N A R - F I I K L Q - - Y - Q I I F V P M L D N S - S N Y S S S N I S K S F L F Q C - I I H N Q I T V . . . . . . 44682 CATAGAAGGAAGAAAAGGTTGAAATTACAACCAGAAAAAAGGAAAACAAAAATAGGATAA H R R K K R L K L Q P E K R K T K I G - I E G R K G - N Y N Q K K G K Q K - D K A - K E E K V E I T T R K K E N K N R I . . . . . . 44742 GTTTTGAGGTATACCTGGAGATGGAGTTTTTGCTCGCAAAGAGGATGATGTGATGGGACT V L R Y T W R W S F C S Q R G - C D G T F - G I P G D G V F A R K E D D V M G L S F E V Y L E M E F L L A K R M M - W D . . 44802 TCTGCGTAGACGTT S A - T L R R R F C V D V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-11_AGS-1_PPS_1 (44356 44625) (frame '2'; 267 bp, 89 residues) 1 LYTYIYIYSL QKLISKMRCC GRDCYPCKQR SWFKSLVEYF RTNGALLCMS PYITGLQCEY 61 SIKTDTLPIE RTWQNIVNFC QKKNIILSE- PGL 12 (- strand): 46081 45163 AGS-1 (46081 46045,45891 45777,45614 45163) SCR (e 0.878 d 0.970 a 0.989,e 1.000 d 0.859 a 0.143,e 1.000) Exon 1 46081 46045 ( 37 n); score: 0.878 Intron 1 46044 45892 ( 153 n); Pd: 0.970 Pa: 0.989 Exon 2 45891 45777 ( 115 n); score: 1.000 Intron 2 45776 45615 ( 162 n); Pd: 0.859 Pa: 0.143 Exon 3 45614 45163 ( 452 n); score: 1.000 PGS (46081 46045,45891 45777,45614 45163) SGN-E241748+ 3-phase translation of AGS-1 (-strand): . . . . : . . 46081 AGGAGAGGATATCTCGTACCCCTGAGCAAGTATTAAG : GTACTATAGAGATGCTGGAGCAA R R G Y L V P L S K Y - : G T I E M L E Q G E D I S Y P - A S I K : V L - R C W S K E R I S R T P E Q V L R : Y Y R D A G A . . . . . . 45868 AACCATTATGGCCAACGTCAAGTGGCCAACCATCAAAAGCTGACATCCCTAAGTGCACCT N H Y G Q R Q V A N H Q K L T S L S A P T I M A N V K W P T I K S - H P - V H L K P L W P T S S G Q P S K A D I P K C T . . . . : . . 45808 ATTGTGGCGATCATAGGGCTTTTGAATTTCAG : GTTTTACCACAAATACTCTATTATTTTG I V A I I G L L N F R : F Y H K Y S I I L L W R S - G F - I S : G F T T N T L L F W Y C G D H R A F E F Q : V L P Q I L Y Y F . . . . . . 45586 GTGTGGAAAATGATGTGCATTCTCTTGATTGGGCTACTATTGCTGTGTACACCTGTGAAT V W K M M C I L L I G L L L L C T P V N C G K - C A F S - L G Y Y C C V H L - I G V E N D V H S L D W A T I A V Y T C E . . . . . . 45526 CCTCGTGCGATGGACATATAGCTTACAAGGAGGAATTTGCTTGGGTTCAAATTGCATCTC P R A M D I - L T R R N L L G F K L H L L V R W T Y S L Q G G I C L G S N C I S S S C D G H I A Y K E E F A W V Q I A S . . . . . . 45466 AATCAAGCACAACCCAGAGATGAGACGCGTAAAGCATGGTTTGAAACAAGATTGATAATG N Q A Q P R D E T R K A W F E T R L I M I K H N P E M R R V K H G L K Q D - - W Q S S T T Q R - D A - S M V - N K I D N . . . . . . 45406 GACCGCACTCTACCCTTCACTTAAATACCAGACTTCTGGTTTGCCGTGAGATTCAACTCA D R T L P F T - I P D F W F A V R F N S T A L Y P S L K Y Q T S G L P - D S T H G P H S T L H L N T R L L V C R E I Q L . . . . . . 45346 TGATGTGCACTTAACCTGCACAACATGCCTCGCGCTAAAATTTTGTTTTCCTTTATATTA - C A L N L H N M P R A K I L F S F I L D V H L T C T T C L A L K F C F P L Y - M M C T - P A Q H A S R - N F V F L Y I . . . . . . 45286 ATTTTTCTCAGATCATTTTTAGTTTTCCTGGTTAATTTGCAAACGTTTCACATTACAACG I F L R S F L V F L V N L Q T F H I T T F F S D H F - F S W L I C K R F T L Q R N F S Q I I F S F P G - F A N V S H Y N . . . . . . 45226 TCAGTAGTGAATATTTTGTTGTAATAGTATGTTTTTCTCATCAATCGAGGTGTTCAGCGT S V V N I L L - - Y V F L I N R G V Q R Q - - I F C C N S M F F S S I E V F S V V S S E Y F V V I V C F S H Q S R C S A . 45166 AAAA K K - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-12_AGS-1_PPS_1 (46079 46045,45891 45777,45614 45444) (frame '0'; 318 bp, 106 residues) 1 ERISRTPEQV LRYYRDAGAK PLWPTSSGQP SKADIPKCTY CGDHRAFEFQ VLPQILYYFG 61 VENDVHSLDW ATIAVYTCES SCDGHIAYKE EFAWVQIASQ SSTTQR- PGL 13 (- strand): 50069 46500 AGS-1 (50069 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) SCR (e 1.000 d 0.939 a 0.532,e 1.000 d 0.236 a 0.974,e 1.000 d 0.991 a 0.835,e 1.000 d 0.974 a 0.217,e 1.000 d 0.949 a 0.997,e 1.000 d 0.958 a 0.908,e 1.000) Exon 1 50069 49959 ( 111 n); score: 1.000 Intron 1 49958 49652 ( 307 n); Pd: 0.939 Pa: 0.532 Exon 2 49651 49387 ( 265 n); score: 1.000 Intron 2 49386 49274 ( 113 n); Pd: 0.236 Pa: 0.974 Exon 3 49273 49190 ( 84 n); score: 1.000 Intron 3 49189 47269 (1921 n); Pd: 0.991 Pa: 0.835 Exon 4 47268 47135 ( 134 n); score: 1.000 Intron 4 47134 47041 ( 94 n); Pd: 0.974 Pa: 0.217 Exon 5 47040 46943 ( 98 n); score: 1.000 Intron 5 46942 46746 ( 197 n); Pd: 0.949 Pa: 0.997 Exon 6 46745 46657 ( 89 n); score: 1.000 Intron 6 46656 46582 ( 75 n); Pd: 0.958 Pa: 0.908 Exon 7 46581 46500 ( 82 n); score: 1.000 PGS (49468 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) SGN-E274861+ PGS (49468 49387,49273 49190,47268 47135,47040 46943,46745 46670) SGN-E276752+ PGS (50031 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46712) SGN-E345265+ PGS (50069 49959,49651 49387,49273 49190,47268 47135) SGN-E348733+ PGS (50048 49959,49651 49412) SGN-E338271+ 3-phase translation of AGS-1 (-strand): . . . . . . 50069 GTTGCTCTGTTCCAGCTGTTTGCTGTTTGCTGTTTGAGGTCTCAACACTCGCTTAATCTC V A L F Q L F A V C C L R S Q H S L N L L L C S S C L L F A V - G L N T R L I S C S V P A V C C L L F E V S T L A - S . . . . . . : 50009 AGCTAAATATAATTCAAAGCTGTAAAGGAAACGAGAAAACATCTAATTTAG : TTTAGCGAA S - I - F K A V K E T R K H L I - : F S E A K Y N S K L - R K R E N I - F S : L A K Q L N I I Q S C K G N E K T S N L : V - R . . . . . . 49642 AATGGAGGAAGAATTTAATGCTGGAAGGATCAAAGGCGCTGCTAAGAGGACTTTGCAAAT N G G R I - C W K D Q R R C - E D F A N M E E E F N A G R I K G A A K R T L Q I K W R K N L M L E G S K A L L R G L C K . . . . . . 49582 TACACCTCTTGATGAGGAAGATCAAGAAGAGGTTCAAATTGATGACAGTGGAGATGTTGA Y T S - - G R S R R G S N - - Q W R C - T P L D E E D Q E E V Q I D D S G D V D L H L L M R K I K K R F K L M T V E M L . . . . . . 49522 TTCGTATGATGATGATGATGAGACGGAGGAGGAGGATGAAGACAAGGAACCTGTGGGATT F V - - - - - D G G G G - R Q G T C G I S Y D D D D E T E E E D E D K E P V G L I R M M M M M R R R R R M K T R N L W D . . . . . . 49462 AGGGGTTCTTGAAAAGCCTGAGAATTCATGGTCACTGCTACGTGAGTTATTTCCAAGCAA R G S - K A - E F M V T A T - V I S K Q G V L E K P E N S W S L L R E L F P S K - G F L K S L R I H G H C Y V S Y F Q A . . : . . . . 49402 AGCTGGGGGTACTCCG : GCTTGGTTGGATCCAATAAACTTGCCAACAGGAAAATCCTGTCT S W G Y S : G L V G S N K L A N R K I L S A G G T P : A W L D P I N L P T G K S C L K L G V L R : L G W I Q - T C Q Q E N P V . . . . : . . 49229 TTGCGATATCTGTGGCGAGCCTTTGCAGTTCATGCTTCAG : GTTTACGCACCACTCACGGA L R Y L W R A F A V H A S : G L R T T H G C D I C G E P L Q F M L Q : V Y A P L T E F A I S V A S L C S S C F R : F T H H S R . . . . . . 47248 GAAGGATTCGACTTTTCATCGCACCTTATTTCTCTTCATGTGTACATCAATGACCTGTCT E G F D F S S H L I S L H V Y I N D L S K D S T F H R T L F L F M C T S M T C L R R I R L F I A P Y F S S C V H Q - P V . . . . . . : 47188 CCTTAAAGATCAACATGAGCAGTGGAAAAGGAACCAAGACAAGCAATCCAGGAG : TGTCAA P - R S T - A V E K E P R Q A I Q E : C Q L K D Q H E Q W K R N Q D K Q S R S : V K S L K I N M S S G K G T K T S N P G : V S . . . . . . 47034 GGTCTTTCGTTGCCAATTGCCCCGTGATAACTCTTTTTACTCCAGTGAACCCCCAAGAAA G L S L P I A P - - L F L L Q - T P K K V F R C Q L P R D N S F Y S S E P P R N R S F V A N C P V I T L F T P V N P Q E . . . . : . . 46974 CAATGGGAAAGATAAACCTTCTAGTCCTGGAG : CTGTTCTCTGTGGCTGGTGTGGTACATG Q W E R - T F - S W S : C S L W L V W Y M N G K D K P S S P G : A V L C G W C G T W T M G K I N L L V L E : L F S V A G V V H . . . . . . 46717 GAAAGGAGATAAAGTCTGTGGTGGTTGCCGAAGAGTACACTACTGCTCGGAGAAACATCA E R R - S L W W L P K S T L L L G E T S K G D K V C G G C R R V H Y C S E K H Q G K E I K S V V V A E E Y T T A R R N I . : . . . . . 46657 G : ACTGTTCATTGGAAATCAGGTCATAAACAACGCTGCTTACCCTCAAGCATTTCTCAGGA : D C S L E I R S - T T L L T L K H F S G : T V H W K S G H K Q R C L P S S I S Q D R : L F I G N Q V I N N A A Y P Q A F L R . . . 46522 TGCATCTGAACCTAGTAATAGTA C I - T - - - A S E P S N S M H L N L V I V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-13_AGS-1_PPS_1 (49963 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46501) (frame '2'; 756 bp, 252 residues) 1 FSLAKMEEEF NAGRIKGAAK RTLQITPLDE EDQEEVQIDD SGDVDSYDDD DETEEEDEDK 61 EPVGLGVLEK PENSWSLLRE LFPSKAGGTP AWLDPINLPT GKSCLCDICG EPLQFMLQVY 121 APLTEKDSTF HRTLFLFMCT SMTCLLKDQH EQWKRNQDKQ SRSVKVFRCQ LPRDNSFYSS 181 EPPRNNGKDK PSSPGAVLCG WCGTWKGDKV CGGCRRVHYC SEKHQTVHWK SGHKQRCLPS 241 SISQDASEPS NS PGL 14 (- strand): 56805 51104 AGS-1 (56805 56713,55039 54957,53867 53272,52435 52324,51205 51104) SCR (e 1.000 d 0.991 a 0.962,e 1.000 d 0.977 a 0.985,e 1.000 d 0.993 a 1.000,e 1.000 d 0.781 a 0.999,e 1.000) Exon 1 56805 56713 ( 93 n); score: 1.000 Intron 1 56712 55040 (1673 n); Pd: 0.991 Pa: 0.962 Exon 2 55039 54957 ( 83 n); score: 1.000 Intron 2 54956 53868 (1089 n); Pd: 0.977 Pa: 0.985 Exon 3 53867 53272 ( 596 n); score: 1.000 Intron 3 53271 52436 ( 836 n); Pd: 0.993 Pa: 1.000 Exon 4 52435 52324 ( 112 n); score: 1.000 Intron 4 52323 51206 (1118 n); Pd: 0.781 Pa: 0.999 Exon 5 51205 51104 ( 102 n); score: 1.000 PGS (53662 53272,52435 52324,51205 51104) SGN-E348907+ PGS (53862 53272,52435 52324,51205 51127) SGN-E555141+ PGS (56805 56713,55039 54957,53867 53340) SGN-E315835+ PGS (56784 56713,55039 54957,53867 53376) SGN-E315736+ 3-phase translation of AGS-1 (-strand): . . . . . . 56805 TCAGCAGAGTAGAAAGCGAAAATGGGGGAAAACGATTTGTGGGACGATTCAGCCCTTGTT S A E - K A K M G E N D L W D D S A L V Q Q S R K R K W G K T I C G T I Q P L L S R V E S E N G G K R F V G R F S P C . . . . : . . 56745 AATGCGTTCAACGATGCCGTATCCAAGTACAAG : ATTATGCATAGTTTAGAAGCTAAAGTT N A F N D A V S K Y K : I M H S L E A K V M R S T M P Y P S T R : L C I V - K L K L - C V Q R C R I Q V Q : D Y A - F R S - S . . . . . . : 55012 AGCAGCAAAGAGGAGAATGTGACAGCTCCTGATGACGGAAGCAATGAGCTGAAAAG : CAAA S S K E E N V T A P D D G S N E L K S : K A A K R R M - Q L L M T E A M S - K : A K - Q Q R G E C D S S - - R K Q - A E K : Q . . . . . . 53863 GGGGAGGGAGGTGATAACAGCAAACTTGCACCAGATACCACTACAGAAATGGGGGATGCA G E G G D N S K L A P D T T T E M G D A G R E V I T A N L H Q I P L Q K W G M Q R G G R - - Q Q T C T R Y H Y R N G G C . . . . . . 53803 AGCAGCCTTCCACCAGTAAAAGAAAATTCCTCTTTTGAGGCAGTTCCTCCTCAAAACCAC S S L P P V K E N S S F E A V P P Q N H A A F H Q - K K I P L L R Q F L L K T T K Q P S T S K R K F L F - G S S S S K P . . . . . . 53743 ACTGGTCAACTGAATGAGCAAAACACCCAGTATAAGGCCATAGAGAAGTGCAGTTCACAG T G Q L N E Q N T Q Y K A I E K C S S Q L V N - M S K T P S I R P - R S A V H R H W S T E - A K H P V - G H R E V Q F T . . . . . . 53683 AGTTTAGAAGATTACAACCAGTTACTCTACAAATATTACGAACTTGAGGATCAAAGGCAA S L E D Y N Q L L Y K Y Y E L E D Q R Q V - K I T T S Y S T N I T N L R I K G K E F R R L Q P V T L Q I L R T - G S K A . . . . . . 53623 AAGATTTTGCAGCAACTTAACCAGTTTGGCATTTGGGGTGATCAAAATTCTGGTTCTGCT K I L Q Q L N Q F G I W G D Q N S G S A R F C S N L T S L A F G V I K I L V L L K D F A A T - P V W H L G - S K F W F C . . . . . . 53563 TCTCAAGAACATCAAGCTTATGCATCACATAATTTAAATCCAACAGAGTCTTCTTTCTAC S Q E H Q A Y A S H N L N P T E S S F Y L K N I K L M H H I I - I Q Q S L L S T F S R T S S L C I T - F K S N R V F F L . . . . . . 53503 TGCCCATATGGATGCCAAAGTTGGGTATCTCCTTGCACTGCATCACCTTGTTGTTTGGGT C P Y G C Q S W V S P C T A S P C C L G A H M D A K V G Y L L A L H H L V V W V L P I W M P K L G I S L H C I T L L F G . . . . . . 53443 GTAAATGAGGATGACAAACCATGCGATGCGTCTATACGATGTGTTCAAGAAAAAAAATCA V N E D D K P C D A S I R C V Q E K K S - M R M T N H A M R L Y D V F K K K N H C K - G - Q T M R C V Y T M C S R K K I . . . . . . 53383 TCTCCTCAAAACCCTAGTTTGGTTGATACAGCAAAAGAAGCTGCAGAAAAAGCACTCTCC S P Q N P S L V D T A K E A A E K A L S L L K T L V W L I Q Q K K L Q K K H S P I S S K P - F G - Y S K R S C R K S T L . . . . . . : 53323 TCTTTAAAGCAAGCTTCTAACACGGCTTCACTGAATTCATTTGCAAAGGAAG : GAAAACAA S L K Q A S N T A S L N S F A K E : G K Q L - S K L L T R L H - I H L Q R K : E N K L F K A S F - H G F T E F I C K G R : K T . . . . . . 52427 ATAGAGATGATGAACCCTGTTGCTGCAGAGAAAACTGGCGGCTTGGAGACGGATCTATCG I E M M N P V A A E K T G G L E T D L S - R - - T L L L Q R K L A A W R R I Y R N R D D E P C C C R E N W R L G D G S I . . . . . : . 52367 GAAGTGCTAAATGCATGGTATTCTGCGGGCCTTTACACTGGAAA : GTATCTTTCAGAGCAA E V L N A W Y S A G L Y T G K : Y L S E Q K C - M H G I L R A F T L E : S I F Q S N G S A K C M V F C G P L H W K : V S F R A . . . . . . 51189 TCCAAGAAGAGAGATGGTTAGCGTCGTACTGATTCAGTTGGAACTTAAATGTGGTGTTGT S K K R D G - R R T D S V G T - M W C C P R R E M V S V V L I Q L E L K C G V V I Q E E R W L A S Y - F S W N L N V V L . . . 51129 CGATACGACAAGAGGAAAAATTCATT R Y D K R K N S D T T R G K I H S I R Q E E K F I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-14_AGS-1_PPS_1 (56793 56713,55039 54957,53867 53272,52435 52324,51205 51169) (frame '1'; 906 bp, 302 residues) 1 KAKMGENDLW DDSALVNAFN DAVSKYKIMH SLEAKVSSKE ENVTAPDDGS NELKSKGEGG 61 DNSKLAPDTT TEMGDASSLP PVKENSSFEA VPPQNHTGQL NEQNTQYKAI EKCSSQSLED 121 YNQLLYKYYE LEDQRQKILQ QLNQFGIWGD QNSGSASQEH QAYASHNLNP TESSFYCPYG 181 CQSWVSPCTA SPCCLGVNED DKPCDASIRC VQEKKSSPQN PSLVDTAKEA AEKALSSLKQ 241 ASNTASLNSF AKEGKQIEMM NPVAAEKTGG LETDLSEVLN AWYSAGLYTG KYLSEQSKKR 301 DG- AGS-2 (51579 51457) SCR (e 1.000) Exon 1 51579 51457 ( 123 n); score: 1.000 PGS (51579 51457) SGN-E231079+ PGS (51566 51457) SGN-E353459- PGS (51540 51457) SGN-E352216- PGS (51536 51457) SGN-E353582- 3-phase translation of AGS-2 (-strand): . . . . . . 51579 TTTCACAAATGGTATTGAAATAAGGCCACCTTTTGATTGCAGCCAAGGCAAGAATGCCAC F H K W Y - N K A T F - L Q P R Q E C H F T N G I E I R P P F D C S Q G K N A T S Q M V L K - G H L L I A A K A R M P . . . . . . 51519 GAATGGTGTTTAGCAACCTGAAGCAAATGTTTTCCCTATCTCTAAAGGGGGCCCTTGGGC E W C L A T - S K C F P Y L - R G P L G N G V - Q P E A N V F P I S K G G P W A R M V F S N L K Q M F S L S L K G A L G . 51459 CAC H P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 51457 GTGGCCCAAGGGCCCCCTTTAGAGATAGGGAAAACATTTGCTTCAGGTTGCTAAACACCA V A Q G P P L E I G K T F A S G C - T P W P K G P L - R - G K H L L Q V A K H H G P R A P F R D R E N I C F R L L N T . . . . . . 51517 TTCGTGGCATTCTTGCCTTGGCTGCAATCAAAAGGTGGCCTTATTTCAATACCATTTGTG F V A F L P W L Q S K G G L I S I P F V S W H S C L G C N Q K V A L F Q Y H L - I R G I L A L A A I K R W P Y F N T I C . 51577 AAA K E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 59622 68546 AGS-1 (59622 59949,61337 61455,61860 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68546) SCR (e 1.000 d 0.997 a 0.918,e 1.000 d 0.823 a 0.996,e 1.000 d 0.970 a 0.934,e 1.000 d 0.970 a 0.999,e 1.000 d 0.000 a 0.990,e 1.000 d 0.916 a 0.943,e 1.000 d 0.796 a 0.994,e 0.971) Exon 1 59622 59949 ( 328 n); score: 1.000 Intron 1 59950 61336 (1387 n); Pd: 0.997 Pa: 0.918 Exon 2 61337 61455 ( 119 n); score: 1.000 Intron 2 61456 61859 ( 404 n); Pd: 0.823 Pa: 0.996 Exon 3 61860 63103 (1244 n); score: 1.000 Intron 3 63104 63555 ( 452 n); Pd: 0.970 Pa: 0.934 Exon 4 63556 63797 ( 242 n); score: 1.000 Intron 4 63798 64974 (1177 n); Pd: 0.970 Pa: 0.999 Exon 5 64975 65072 ( 98 n); score: 1.000 Intron 5 65073 66127 (1055 n); Pd: 0.000 Pa: 0.990 Exon 6 66128 66307 ( 180 n); score: 1.000 Intron 6 66308 66392 ( 85 n); Pd: 0.916 Pa: 0.943 Exon 7 66393 66488 ( 96 n); score: 1.000 Intron 7 66489 67961 (1473 n); Pd: 0.796 Pa: 0.994 Exon 8 67962 68546 ( 585 n); score: 0.971 PGS (59622 59949,61337 61455,61860 61941) SGN-E331183+ PGS (59626 59949,61337 61455,61860 62151) SGN-E547185+ PGS (61995 62526) SGN-E248674+ PGS (62096 62655) SGN-E228078+ PGS (62370 62882) SGN-E300731+ PGS (62518 63103,63556 63658) SGN-E276865+ PGS (62518 63034) SGN-E274724+ PGS (62587 63103,63556 63583) SGN-E247433+ PGS (62587 63103,63556 63582) SGN-E247457+ PGS (62588 63014) SGN-E267104+ PGS (62638 63103,63556 63588) SGN-E323530+ PGS (62807 63103,63556 63797,64975 65009) SGN-E255204+ PGS (62807 63103,63556 63797) SGN-E262724+ PGS (62807 63103,63556 63773) SGN-E259010+ PGS (62909 63103,63556 63797,64975 65072,66128 66170) SGN-E253400+ PGS (63044 63103,63556 63797,64975 65072,66128 66271) SGN-E235459+ PGS (63598 63797,64975 65072,66128 66307,66393 66420) SGN-E249967+ PGS (65002 65072,66128 66307,66393 66488,67962 68151) SGN-E237966+ PGS (65002 65072,66128 66307,66393 66488,67962 68071) SGN-E241379+ PGS (66128 66307,66393 66488,67962 68175) SGN-E556116+ PGS (66128 66307,66393 66488,67962 68175) SGN-E552829+ PGS (66128 66307,66393 66488,67962 68175) SGN-E552607+ PGS (66128 66307,66393 66488,67962 68175) SGN-E552891+ PGS (66146 66307,66393 66488,67962 68212) SGN-E278920- PGS (66216 66307,66393 66488,67962 68303) SGN-E238579+ PGS (66216 66307,66393 66488,67962 68245) SGN-E233463+ PGS (66216 66307,66393 66488,67962 68012) SGN-E238329+ PGS (66217 66307,66393 66488,67962 68004) SGN-E240277+ PGS (66248 66307,66393 66488,67962 68271) SGN-E352226+ PGS (66266 66307,66393 66488,67962 68412) SGN-E302651+ PGS (68060 68546) SGN-E252647- PGS (68085 68281) SGN-E549494- 3-phase translation of AGS-1 (+strand): . . . . . . 59622 TTTGCCGACCTCTCCTTCCTACCTTTTTCGCTGAAAAATATTTAATTTTATTTATTTTCT F A D L S F L P F S L K N I - F Y L F S L P T S P S Y L F R - K I F N F I Y F L C R P L L P T F F A E K Y L I L F I F . . . . . . 59682 TTCTTTTCGCCCAAGTAACTTACAATATTCAAAGTGTTGAATTTTTCTCACAAACTATAA F F S P K - L T I F K V L N F S H K L - S F R P S N L Q Y S K C - I F L T N Y K F L F A Q V T Y N I Q S V E F F S Q T I . . . . . . 59742 ATGTTATCTTTATTATTAATTATAATAATAATAATTTAGCTGATGAATTTCACAAGCTAT M L S L L L I I I I I I - L M N F T S Y C Y L Y Y - L - - - - F S - - I S Q A I N V I F I I N Y N N N N L A D E F H K L . . . . . . 59802 TCAGTGAATTCCATCTCCGTATCAACGCCGTCGTCTCGAGATCTCCGTTGCTTTGTTTGA S V N S I S V S T P S S R D L R C F V - Q - I P S P Y Q R R R L E I S V A L F D F S E F H L R I N A V V S R S P L L C L . . . . . . 59862 TCGTTTGTTTCTCAGTTATCCCTGTATCCTTTGTTCTTTCTCCGAGACGACGACAAAGAT S F V S Q L S L Y P L F F L R D D D K D R L F L S Y P C I L C S F S E T T T K I I V C F S V I P V S F V L S P R R R Q R . . . : . . . 59922 AAAGACGACGGCGTTTGATCTATGAAAG : AGGAGGTGAATTAAATTAGCGCGTAAGTTACC K D D G V - S M K : E E V N - I S A - V T K T T A F D L - K : R R - I K L A R K L P - R R R R L I Y E R : G G E L N - R V S Y . . . . . . 61369 TTTGTACAAAGGGAAATTTGTTGACTTGACATCAACATTATGGAGAGAACGTGCTTCTAC F V Q R E I C - L D I N I M E R T C F Y L Y K G K F V D L T S T L W R E R A S T L C T K G N L L T - H Q H Y G E N V L L . . . : . . . 61429 CGAGATGGCCACTCATTGCAGAATTTG : GTTTTGCATTTCGTTCTCCATGATGCGGCTTCT R D G H S L Q N L : V L H F V L H D A A S E M A T H C R I W : F C I S F S M M R L L P R W P L I A E F : G F A F R S P - C G F . . . . . . 61893 CAGAAATTTGTTATGACAGACCTGTGCTATACTAGTTTAGGATTTAGTCTTTCTGTTAGA Q K F V M T D L C Y T S L G F S L S V R R N L L - Q T C A I L V - D L V F L L E S E I C Y D R P V L Y - F R I - S F C - . . . . . . 61953 AATTTGTAAATAGTAGTTGCCTGTAGATAAATGGAGTCAAACTGGGTTGAAGTGTTAGAT N L - I V V A C R - M E S N W V E V L D I C K - - L P V D K W S Q T G L K C - I K F V N S S C L - I N G V K L G - S V R . . . . . . 62013 AATGACCGTAGGACAGCTGACGTCGACTCAAAAAGTAAAGTAGCGTCTCAGTACGTGGCA N D R R T A D V D S K S K V A S Q Y V A M T V G Q L T S T Q K V K - R L S T W H - - P - D S - R R L K K - S S V S V R G . . . . . . 62073 CGTATAGTTGGAGCTGGCACTGAGAAGCTGGAGGAGCTATCATTTCAACCAAATTGTAGC R I V G A G T E K L E E L S F Q P N C S V - L E L A L R S W R S Y H F N Q I V A T Y S W S W H - E A G G A I I S T K L - . . . . . . 62133 TCATTTTATAGCACGCTTGGTAAGAGGAAGAGGACTGTGGAAGGTGAAACTAATTGCAGA S F Y S T L G K R K R T V E G E T N C R H F I A R L V R G R G L W K V K L I A D L I L - H A W - E E E D C G R - N - L Q . . . . . . 62193 TCACATCTCAGGAAATCGACAGTTAAGAACTACTCAAATTTCATTAAAAGTGGACTGCCA S H L R K S T V K N Y S N F I K S G L P H I S G N R Q L R T T Q I S L K V D C H I T S Q E I D S - E L L K F H - K W T A . . . . . . 62253 CAACGTGTTTTATATCATCAGAATGGTGAATGGAATGATTTCCCTCAAGATATTGTTCGT Q R V L Y H Q N G E W N D F P Q D I V R N V F Y I I R M V N G M I S L K I L F V T T C F I S S E W - M E - F P S R Y C S . . . . . . 62313 ATTGTCAAAGAAGATTTCCGTGCAAAGAAGGCTGTGATTGAGGTGAACTTTGGTGGCTTT I V K E D F R A K K A V I E V N F G G F L S K K I S V Q R R L - L R - T L V A F Y C Q R R F P C K E G C D - G E L W W L . . . . . . 62373 CATGTAATACTTGATATTCTATATATGGTTCAGGTAAATTTGGTTACCGGATTGGAGAAA H V I L D I L Y M V Q V N L V T G L E K M - Y L I F Y I W F R - I W L P D W R N S C N T - Y S I Y G S G K F G Y R I G E . . . . . . 62433 CCTATTGCCTGGATAGACGAAGCAGGTGGCTGTTTCTTCCCTGATTTATGTCTCGTTAGT P I A W I D E A G G C F F P D L C L V S L L P G - T K Q V A V S S L I Y V S L V T Y C L D R R S R W L F L P - F M S R - . . . . . . 62493 TGTAAAGCGCACGACAACATTGAGATACAATCGCAGAGAACTGAAGGATTCAGTGCTGCT C K A H D N I E I Q S Q R T E G F S A A V K R T T T L R Y N R R E L K D S V L L L - S A R Q H - D T I A E N - R I Q C C . . . . . . 62553 GAGCCAGATAGGGCTACTAATATCAAGTTGCATCTTGAAATAGATATTAATGGACCGAAC E P D R A T N I K L H L E I D I N G P N S Q I G L L I S S C I L K - I L M D R T - A R - G Y - Y Q V A S - N R Y - W T E . . . . . . 62613 AATTGCAAATTGGATGAAGGTATGGAAGAGTCAAATGTCCGTGTTAAAAGGATTAAAGTC N C K L D E G M E E S N V R V K R I K V I A N W M K V W K S Q M S V L K G L K S Q L Q I G - R Y G R V K C P C - K D - S . . . . . . 62673 GATCCTTTAAAAGATAATCAACAATTTGCTGTTGATCAAAAATCATATCCTAAAATGGAA D P L K D N Q Q F A V D Q K S Y P K M E I L - K I I N N L L L I K N H I L K W K R S F K R - S T I C C - S K I I S - N G . . . . . . 62733 GTAGTGGCAGAAAATCAACAGGATCAGGAAAGTCTGTCTCCTATATTAGAAGATACACTT V V A E N Q Q D Q E S L S P I L E D T L - W Q K I N R I R K V C L L Y - K I H L S S G R K S T G S G K S V S Y I R R Y T . . . . . . 62793 AAGTTGGTGGATGCAGAATCGGTTAAAACTATGTTTGTTAAGGGAATGAATACCATCTAT K L V D A E S V K T M F V K G M N T I Y S W W M Q N R L K L C L L R E - I P S I - V G G C R I G - N Y V C - G N E Y H L . . . . . . 62853 ATGGTGGATATAGTCAAAATTAGTCAATGCTCAAGTAAATATATGAGAAATCGCTTGGAA M V D I V K I S Q C S S K Y M R N R L E W W I - S K L V N A Q V N I - E I A W N Y G G Y S Q N - S M L K - I Y E K S L G . . . . . . 62913 CTGTTTGAGAAGCAGGCTGAGATAACTCAAAAGTATCGTGGGAAATCCAATGTTCGGCAT L F E K Q A E I T Q K Y R G K S N V R H C L R S R L R - L K S I V G N P M F G M T V - E A G - D N S K V S W E I Q C S A . . . . . . 62973 GCTTGGCTTGCCGCTTCCAAAGAGGTAGTATCTACAATTATGAACTATGGGCTTATGCAT A W L A A S K E V V S T I M N Y G L M H L G L P L P K R - Y L Q L - T M G L C M C L A C R F Q R G S I Y N Y E L W A Y A . . . . . . 63033 GGGGCCTGTGGACAGAAGACTAAGCTTGGTGTTGGAGTGCACCTCATTGCCCAGGACTGT G A C G Q K T K L G V G V H L I A Q D C G P V D R R L S L V L E C T S L P R T V W G L W T E D - A W C W S A P H C P G L . . : . . . . 63093 GCCTCTAAAAG : TGCCGCTAGCTGTGATATTGACGAAAATGGCATCCGTTACATGGTTCTT A S K S : A A S C D I D E N G I R Y M V L P L K : V P L A V I L T K M A S V T W F F C L - K : C R - L - Y - R K W H P L H G S . . . . . . 63605 TGTCGTGTCATTTTGGGCAATGAAGAACTTTTGCATTTTGGCTCTCATCAATCTTATCCA C R V I L G N E E L L H F G S H Q S Y P V V S F W A M K N F C I L A L I N L I Q L S C H F G Q - R T F A F W L S S I L S . . . . . . 63665 AGCAATGAGAGATATGATAGTGGTGTTGATGATCTCGAGAGTCCTACTCACTATACTGTT S N E R Y D S G V D D L E S P T H Y T V A M R D M I V V L M I S R V L L T I L F K Q - E I - - W C - - S R E S Y S L Y C . . . . . . 63725 TGGAACATGAATATGAATACACACATATATCCTGAATATGTCGTGAGCTTCAGGATGTCT W N M N M N T H I Y P E Y V V S F R M S G T - I - I H T Y I L N M S - A S G C L L E H E Y E Y T H I S - I C R E L Q D V . . : . . . . 63785 TCAGGAGCAGAAG : GGGCTCCAATAAAGGAAGAAAGTCGGCTTGATGTCTCCAGAGTTACT S G A E : G A P I K E E S R L D V S R V T Q E Q K : G L Q - R K K V G L M S P E L L F R S R R : G S N K G R K S A - C L Q S Y . . . . . . : 65022 TCTCAGGGATCTGAGGAGCGATTGGACTTGAATAAATTGCCTACAGAATTG : GGGAACTGT S Q G S E E R L D L N K L P T E L : G N C L R D L R S D W T - I N C L Q N W : G T V F S G I - G A I G L E - I A Y R I : G E L . . . . . . 66137 CAGCAATATCAATTTGTAAGAAACATACAGCAATCCCATGGTGTTGGTGTGGGTACCAAT Q Q Y Q F V R N I Q Q S H G V G V G T N S N I N L - E T Y S N P M V L V W V P I S A I S I C K K H T A I P W C W C G Y Q . . . . . . 66197 AAATCACCTAAATCCCCCTGGATGCCTTTCTCTATGTTATTCGGAGCTATTTCAGCTAAA K S P K S P W M P F S M L F G A I S A K N H L N P P G C L S L C Y S E L F Q L K - I T - I P L D A F L Y V I R S Y F S - . . . . . . : 66257 GTGTCTCCAAAAGATTTGAAATTGGTTCATGCACATTATGACTTGTTCAGG : AGCAAAAAA V S P K D L K L V H A H Y D L F R : S K K C L Q K I - N W F M H I M T C S G : A K K S V S K R F E I G S C T L - L V Q : E Q K . . . . . . 66402 ATTTCCCGGAATGATTTCATTAGAAGGCTGAGGTTGATAGTGGGTGATCAGTTATTGAAG I S R N D F I R R L R L I V G D Q L L K F P G M I S L E G - G - - W V I S Y - S N F P E - F H - K A E V D S G - S V I E . . . : . . . 66462 TCTACCATAACCAATCTCCAGTGTAAG : CCGCCTTCCGCATCTCCATGCTTTCTGAATGTG S T I T N L Q C K : P P S A S P C F L N V L P - P I S S V S : R L P H L H A F - M C V Y H N Q S P V - : A A F R I S M L S E C . . . . . . 67995 CCGAGTGGGGAGAGTAATTGTTGAGGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGC P S G E S N C - G C T S K G G S L R G G R V G R V I V E A V P A R V D R C V V A A E W G E - L L R L Y Q Q G W I A A W W . . . . . . 68055 GAAGAGTCCACTTTTACCAATCAAGCGTCGTCCTCTTCTCTCTATCTCTCTTTGTTTTTG E E S T F T N Q A S S S S L Y L S L F L K S P L L P I K R R P L L S I S L C F W R R V H F Y Q S S V V L F S L S L F V F . . . . . . 68115 GTGTTATGTAGCTTTAGTTTCTTTGAACATTTTGTGATTATATGCAGTTATGTCTAGACT V L C S F S F F E H F V I I C S Y V - T C Y V A L V S L N I L - L Y A V M S R L G V M - L - F L - T F C D Y M Q L C L D . . . . . . 68175 TGCACCTTCTGTTCTTCTATATATGCGACTTCCAATTCTCTCCCGTCTGTGATGGCAATA C T F C S S I Y A T S N S L P S V M A I A P S V L L Y M R L P I L S R L - W Q - L H L L F F Y I C D F Q F S P V C D G N . . . . . . 68235 ATTGGTGCACAGCAGGAGTTACTGGAGCTTAAATTGGTTTTAGGTTGGCATCTTGAAAGT I G A Q Q E L L E L K L V L G W H L E S L V H S R S Y W S L N W F - V G I L K V N W C T A G V T G A - I G F R L A S - K . . . . . . 68295 GCTGCTAGTCGGTTTAATCATGGTTTGAAGAGAATAAAACTGTAGCAAACATCGGTGGCG A A S R F N H G L K R I K L - Q T S V A L L V G L I M V - R E - N C S K H R W R C C - S V - S W F E E N K T V A N I G G . . . . . . 68355 TTGTATTTTAACAAAAACTTAGGCATTGTACTGTTATCACTTTGAAGCTGAGGGGTGAAA L Y F N K N L G I V L L S L - S - G V K C I L T K T - A L Y C Y H F E A E G - N V V F - Q K L R H C T V I T L K L R G E . . . . . . 68415 TTTTTCCTTTGAGTTTTCGCATTATTATGTTTCTAATTCACTTGCCTAAAAATTCTTGAA F F L - V F A L L C F - F T C L K I L E F S F E F S H Y Y V S N S L A - K F L N I F P L S F R I I M F L I H L P K N S - . . . . . . 68475 CATTGTTATAATAGCCTTCTGGTATGAACTTGTAATATTTCACTGGTACAATATGAATTT H C Y N S L L V - T C N I S L V Q Y E F I V I I A F W Y E L V I F H W Y N M N F T L L - - P S G M N L - Y F T G T I - I . . 68535 CTCTAGAATCGA L - N R S R I S L E S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-15_AGS-1_PPS_1 (61983 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68018) (frame '1'; 1791 bp, 597 residues) 1 MESNWVEVLD NDRRTADVDS KSKVASQYVA RIVGAGTEKL EELSFQPNCS SFYSTLGKRK 61 RTVEGETNCR SHLRKSTVKN YSNFIKSGLP QRVLYHQNGE WNDFPQDIVR IVKEDFRAKK 121 AVIEVNFGGF HVILDILYMV QVNLVTGLEK PIAWIDEAGG CFFPDLCLVS CKAHDNIEIQ 181 SQRTEGFSAA EPDRATNIKL HLEIDINGPN NCKLDEGMEE SNVRVKRIKV DPLKDNQQFA 241 VDQKSYPKME VVAENQQDQE SLSPILEDTL KLVDAESVKT MFVKGMNTIY MVDIVKISQC 301 SSKYMRNRLE LFEKQAEITQ KYRGKSNVRH AWLAASKEVV STIMNYGLMH GACGQKTKLG 361 VGVHLIAQDC ASKSAASCDI DENGIRYMVL CRVILGNEEL LHFGSHQSYP SNERYDSGVD 421 DLESPTHYTV WNMNMNTHIY PEYVVSFRMS SGAEGAPIKE ESRLDVSRVT SQGSEERLDL 481 NKLPTELGNC QQYQFVRNIQ QSHGVGVGTN KSPKSPWMPF SMLFGAISAK VSPKDLKLVH 541 AHYDLFRSKK ISRNDFIRRL RLIVGDQLLK STITNLQCKP PSASPCFLNV PSGESNC- >C08HBa0320P23.1+_PGL-15_AGS-1_PPS_2 (59624 59923) (frame '0'; 297 bp, 99 residues) 1 CRPLLPTFFA EKYLILFIFF LFAQVTYNIQ SVEFFSQTIN VIFIINYNNN NLADEFHKLF 61 SEFHLRINAV VSRSPLLCLI VCFSVIPVSF VLSPRRRQR- AGS-2 (65247 65450) SCR (e 0.968) Exon 1 65247 65450 ( 204 n); score: 0.968 PGS (65247 65450) SGN-E336669+ 3-phase translation of AGS-2 (+strand): . . . . . . 65247 TGGGGCAACATGAAGTGCATCTCTTGGCACAAGTTGATTGCTCCAGTGGGTACCTTCTGT W G N M K C I S W H K L I A P V G T F C G A T - S A S L G T S - L L Q W V P S V G Q H E V H L L A Q V D C S S G Y L L . . . . . . 65307 GCGCTCGTCTTCAGAAAACTGAACTTTGACTTGAAATAGTATTCTTTGCTGCGGGTGCAC A L V F R K L N F D L K - Y S L L R V H R S S S E N - T L T - N S I L C C G C T C A R L Q K T E L - L E I V F F A A G A . . . . . . 65367 AAGAATTTGCAATATGAGGTTTGAAGGCTTTGTATCAGCACATATTTTTGTCTATATATG K N L Q Y E V - R L C I S T Y F C L Y M R I C N M R F E G F V S A H I F V Y I - Q E F A I - G L K A L Y Q H I F L S I Y . . . 65427 AATTTTCATTCATTGACAGTCCTT N F H S L T V L I F I H - Q S E F S F I D S P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 65450 AAGGACTGTCAATGAATGAAAATTCATATATAGACAAAAATATGTGCTGATACAAAGCCT K D C Q - M K I H I - T K I C A D T K P R T V N E - K F I Y R Q K Y V L I Q S L G L S M N E N S Y I D K N M C - Y K A . . . . . . 65390 TCAAACCTCATATTGCAAATTCTTGTGCACCCGCAGCAAAGAATACTATTTCAAGTCAAA S N L I L Q I L V H P Q Q R I L F Q V K Q T S Y C K F L C T R S K E Y Y F K S K F K P H I A N S C A P A A K N T I S S Q . . . . . . 65330 GTTCAGTTTTCTGAAGACGAGCGCACAGAAGGTACCCACTGGAGCAATCAACTTGTGCCA V Q F S E D E R T E G T H W S N Q L V P F S F L K T S A Q K V P T G A I N L C Q S S V F - R R A H R R Y P L E Q S T C A . . . 65270 AGAGATGCACTTCATGTTGCCCCA R D A L H V A P E M H F M L P K R C T S C C P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (66077 66307,66393 66488,67962 68105) SCR (e 1.000 d 0.916 a 0.943,e 1.000 d 0.796 a 0.994,e 0.986) Exon 1 66077 66307 ( 231 n); score: 1.000 Intron 1 66308 66392 ( 85 n); Pd: 0.916 Pa: 0.943 Exon 2 66393 66488 ( 96 n); score: 1.000 Intron 2 66489 67961 (1473 n); Pd: 0.796 Pa: 0.994 Exon 3 67962 68105 ( 144 n); score: 0.986 PGS (66077 66307,66393 66488,67962 68105) SGN-E285666+ 3-phase translation of AGS-3 (+strand): . . . . . . 66077 TCTCATTAAGTTGATATGCTTGTTTTAACATCTCCTGTTTTATGCTATTAGGGGAACTGT S H - V D M L V L T S P V L C Y - G N C L I K L I C L F - H L L F Y A I R G T V S L S - Y A C F N I S C F M L L G E L . . . . . . 66137 CAGCAATATCAATTTGTAAGAAACATACAGCAATCCCATGGTGTTGGTGTGGGTACCAAT Q Q Y Q F V R N I Q Q S H G V G V G T N S N I N L - E T Y S N P M V L V W V P I S A I S I C K K H T A I P W C W C G Y Q . . . . . . 66197 AAATCACCTAAATCCCCCTGGATGCCTTTCTCTATGTTATTCGGAGCTATTTCAGCTAAA K S P K S P W M P F S M L F G A I S A K N H L N P P G C L S L C Y S E L F Q L K - I T - I P L D A F L Y V I R S Y F S - . . . . . . : 66257 GTGTCTCCAAAAGATTTGAAATTGGTTCATGCACATTATGACTTGTTCAGG : AGCAAAAAA V S P K D L K L V H A H Y D L F R : S K K C L Q K I - N W F M H I M T C S G : A K K S V S K R F E I G S C T L - L V Q : E Q K . . . . . . 66402 ATTTCCCGGAATGATTTCATTAGAAGGCTGAGGTTGATAGTGGGTGATCAGTTATTGAAG I S R N D F I R R L R L I V G D Q L L K F P G M I S L E G - G - - W V I S Y - S N F P E - F H - K A E V D S G - S V I E . . . : . . . 66462 TCTACCATAACCAATCTCCAGTGTAAG : CCGCCTTCCGCATCTCCATGCTTTCTGAATGTG S T I T N L Q C K : P P S A S P C F L N V L P - P I S S V S : R L P H L H A F - M C V Y H N Q S P V - : A A F R I S M L S E C . . . . . . 67995 CCGAGTGGGGAGAGTAATTGTTGAGGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGC P S G E S N C - G C T S K G G S L R G G R V G R V I V E A V P A R V D R C V V A A E W G E - L L R L Y Q Q G W I A A W W . . . . . . 68055 GAAGAGTCCACTTTTACCAATCAAGCGTCGTCCTCTTCTCTCTATCTCTCT E E S T F T N Q A S S S S L Y L S K S P L L P I K R R P L L S I S R R V H F Y Q S S V V L F S L S L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-15_AGS-3_PPS_1 (66128 66307,66393 66488,67962 68018) (frame '1'; 330 bp, 110 residues) 1 GNCQQYQFVR NIQQSHGVGV GTNKSPKSPW MPFSMLFGAI SAKVSPKDLK LVHAHYDLFR 61 SKKISRNDFI RRLRLIVGDQ LLKSTITNLQ CKPPSASPCF LNVPSGESNC - AGS-4 (67139 67650) SCR (e 0.988) Exon 1 67139 67650 ( 512 n); score: 0.988 PGS (67139 67650) SGN-E213753+ 3-phase translation of AGS-4 (+strand): . . . . . . 67139 GGGATTAATAATATCATTAATACACTCAGCTTTCACTTTAGTGTACCCAAGTCACAAATG G I N N I I N T L S F H F S V P K S Q M G L I I S L I H S A F T L V Y P S H K C D - - Y H - Y T Q L S L - C T Q V T N . . . . . . 67199 TTTTTATAATGAAGTTAGTAACTTTACCTAAATATCATAGAATCACTGAACTATATTTTT F L - - S - - L Y L N I I E S L N Y I F F Y N E V S N F T - I S - N H - T I F L V F I M K L V T L P K Y H R I T E L Y F . . . . . . 67259 AATAAAAGTCTGTTACTGAGGAGAGAAGCTAAAATTTGCCTGAATATCATGGAGTCGCTT N K S L L L R R E A K I C L N I M E S L I K V C Y - G E K L K F A - I S W S R L - - K S V T E E R S - N L P E Y H G V A . . . . . . 67319 AGAGGGAAACAAATAAGACATTCTGTATGATATTTGAGTAAAGTGAATGATTCTTTTTAT R G K Q I R H S V - Y L S K V N D S F Y E G N K - D I L Y D I - V K - M I L F I - R E T N K T F C M I F E - S E - F F L . . . . . . 67379 TACAAAACATTGTTTAGTGACTTCTAGTGATATTTAGCCAAAGTTGAGTGACTATTGACT Y K T L F S D F - - Y L A K V E - L L T T K H C L V T S S D I - P K L S D Y - L L Q N I V - - L L V I F S Q S - V T I D . . . . . . 67439 TGTAAAGTACCACTTTGTTCCTCTTGTAGTGTTTTATTCAAGAATTGATTGGATTTGTTT C K V P L C S S C S V L F K N - L D L F V K Y H F V P L V V F Y S R I D W I C F L - S T T L F L L - C F I Q E L I G F V . . . . . . 67499 TTATGGTACATGACAAATTTGTATTCCAATAAATCAAAAACTAGATTGATTAGGAATTGA L W Y M T N L Y S N K S K T R L I R N - Y G T - Q I C I P I N Q K L D - L G I E F M V H D K F V F Q - I K N - I D - E L . . . . . . 67559 GTGGCAAGTGCAATTTACTCTTTAAGTATACCATTTATTTGACCTGTAGTACGTGGTACT V A S A I Y S L S I P F I - P V V R G T W Q V Q F T L - V Y H L F D L - Y V V L S G K C N L L F K Y T I Y L T C S T W Y . . . . 67619 GCATATATTTTTACCTGGATCTTTGAATTTCT A Y I F T W I F E F H I F L P G S L N F C I Y F Y L D L - I S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 67650 AGAAATTCAAAGATCCAGGTAAAAATATATGCAGTACCACGTACTACAGGTCAAATAAAT R N S K I Q V K I Y A V P R T T G Q I N E I Q R S R - K Y M Q Y H V L Q V K - M K F K D P G K N I C S T T Y Y R S N K . . . . . . 67590 GGTATACTTAAAGAGTAAATTGCACTTGCCACTCAATTCCTAATCAATCTAGTTTTTGAT G I L K E - I A L A T Q F L I N L V F D V Y L K S K L H L P L N S - S I - F L I W Y T - R V N C T C H S I P N Q S S F - . . . . . . 67530 TTATTGGAATACAAATTTGTCATGTACCATAAAAACAAATCCAATCAATTCTTGAATAAA L L E Y K F V M Y H K N K S N Q F L N K Y W N T N L S C T I K T N P I N S - I K F I G I Q I C H V P - K Q I Q S I L E - . . . . . . 67470 ACACTACAAGAGGAACAAAGTGGTACTTTACAAGTCAATAGTCACTCAACTTTGGCTAAA T L Q E E Q S G T L Q V N S H S T L A K H Y K R N K V V L Y K S I V T Q L W L N N T T R G T K W Y F T S Q - S L N F G - . . . . . . 67410 TATCACTAGAAGTCACTAAACAATGTTTTGTAATAAAAAGAATCATTCACTTTACTCAAA Y H - K S L N N V L - - K E S F T L L K I T R S H - T M F C N K K N H S L Y S N I S L E V T K Q C F V I K R I I H F T Q . . . . . . 67350 TATCATACAGAATGTCTTATTTGTTTCCCTCTAAGCGACTCCATGATATTCAGGCAAATT Y H T E C L I C F P L S D S M I F R Q I I I Q N V L F V S L - A T P - Y S G K F I S Y R M S Y L F P S K R L H D I Q A N . . . . . . 67290 TTAGCTTCTCTCCTCAGTAACAGACTTTTATTAAAAATATAGTTCAGTGATTCTATGATA L A S L L S N R L L L K I - F S D S M I - L L S S V T D F Y - K Y S S V I L - Y F S F S P Q - Q T F I K N I V Q - F Y D . . . . . . 67230 TTTAGGTAAAGTTACTAACTTCATTATAAAAACATTTGTGACTTGGGTACACTAAAGTGA F R - S Y - L H Y K N I C D L G T L K - L G K V T N F I I K T F V T W V H - S E I - V K L L T S L - K H L - L G Y T K V . . . . 67170 AAGCTGAGTGTATTAATGATATTATTAATCCC K L S V L M I L L I S - V Y - - Y Y - S K A E C I N D I I N P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (- strand): 74318 70709 AGS-1 (74045 73863,73830 73489,73456 73427,73249 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70709) SCR (e 0.858 d 0.053 a 0.000,e 0.763 d 0.000 a 0.513,e 0.667 d 0.000 a 0.750,e 1.000 d 0.999 a 0.974,e 1.000 d 0.902 a 0.992,e 1.000 d 0.857 a 0.863,e 1.000 d 0.986 a 0.998,e 0.940 d 0.992 a 0.999,e 0.939) Exon 1 74045 73863 ( 183 n); score: 0.858 Intron 1 73862 73831 ( 32 n); Pd: 0.053 Pa: 0.000 Exon 2 73830 73489 ( 342 n); score: 0.763 Intron 2 73488 73457 ( 32 n); Pd: 0.000 Pa: 0.513 Exon 3 73456 73427 ( 30 n); score: 0.667 Intron 3 73426 73250 ( 177 n); Pd: 0.000 Pa: 0.750 Exon 4 73249 72988 ( 262 n); score: 1.000 Intron 4 72987 72040 ( 948 n); Pd: 0.999 Pa: 0.974 Exon 5 72039 71852 ( 188 n); score: 1.000 Intron 5 71851 71782 ( 70 n); Pd: 0.902 Pa: 0.992 Exon 6 71781 71587 ( 195 n); score: 1.000 Intron 6 71586 71259 ( 328 n); Pd: 0.857 Pa: 0.863 Exon 7 71258 71197 ( 62 n); score: 1.000 Intron 7 71196 70923 ( 274 n); Pd: 0.986 Pa: 0.998 Exon 8 70922 70856 ( 67 n); score: 0.940 Intron 8 70855 70775 ( 81 n); Pd: 0.992 Pa: 0.999 Exon 9 70774 70709 ( 66 n); score: 0.939 PGS (73228 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70709) SGN-E555284+ PGS (73222 72988,72039 71852,71781 71630) SGN-E298234+ PGS (73226 72988,72039 71852,71781 71631) SGN-E272199+ PGS (73222 72988,72039 71852,71781 71631) SGN-E301033+ PGS (71912 71852,71781 71631) SGN-E250530+ PGS (73222 72988,72039 71852,71781 71678) SGN-E302179+ PGS (73235 72988,72039 71852,71781 71683) SGN-E296107+ PGS (73213 72988,72039 71869) SGN-E312275+ PGS (73222 72988,72039 71898) SGN-E299600+ PGS (74044 73863,73830 73489,73456 73427,73249 73228) SGN-E379618+ PGS (74044 73863,73830 73664) SGN-E200845+ PGS (74045 73863,73830 73692) SGN-E393076+ PGS (74045 73863,73830 73713) SGN-E393075+ 3-phase translation of AGS-1 (-strand): . . . . . . 74045 TAAAATGTTTGTATATTGTATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCT - N V C I L Y N Y K C I G R R Y M F F S K M F V Y C I I I S V - E E D I C F S L K C L Y I V - L - V Y R K K I Y V F L . . . . . . 73985 CGCTTTATACAAAAACAGAAACACAATTTATACACTTTTGTTATATAAAGCAAGAGAAAA R F I Q K Q K H N L Y T F V I - S K R K A L Y K N R N T I Y T L L L Y K A R E N S L Y T K T E T Q F I H F C Y I K Q E K . . . . . . 73925 TTGTATTTCACTGCAATTGTATAATTCACAATTGTATTCGCTGGCCTTTTCGCTGCAGTA L Y F T A I V - F T I V F A G L F A A V C I S L Q L Y N S Q L Y S L A F S L Q Y I V F H C N C I I H N C I R W P F R C S . : . . . . . 73865 TTT : GAAGTAAAATATTTGTAAATTGTATAATTAAGTGCATTGCACAAAAATATATGTTTT F : E V K Y L - I V - L S A L H K N I C F L : K - N I C K L Y N - V H C T K I Y V F I : - S K I F V N C I I K C I A Q K Y M F . . . . . . 73773 TGCATGTGTATATACAATTTTTTCTCGCTTTATACAAAACAGAAACACAATTTATAGACT C M C I Y N F F S L Y T K Q K H N L - T A C V Y T I F S R F I Q N R N T I Y R L L H V Y I Q F F L A L Y K T E T Q F I D . . . . . . 73713 TCTGTTGTATAAAGCGAGAGAGGCGGGTAGAGGGAGAGTGGCGAGCGAGAATAGTAGAAT S V V - S E R G G - R E S G E R E - - N L L Y K A R E A G R G R V A S E N S R M F C C I K R E R R V E G E W R A R I V E . . . . . . 73653 GGCCAGCAAGAGTTTTGGGAGAGAGGTGACTGGCAAACTTTGACAAACGTTTGCTATGAG G Q Q E F W E R G D W Q T L T N V C Y E A S K S F G R E V T G K L - Q T F A M R W P A R V L G E R - L A N F D K R L L - . . . . . . 73593 ACATAATTAAATCAAACAGTAGTTATTTCATTTATTTTAGGTTATTAATTTACTATTATA T - L N Q T V V I S F I L G Y - F T I I H N - I K Q - L F H L F - V I N L L L Y D I I K S N S S Y F I Y F R L L I Y Y Y . . . . . : . 73533 TACAATTATTTCTAAAATAAATATTTCAAATTCTTAAAAATAAAA : AGATGGAGAATAATA Y N Y F - N K Y F K F L K I K : R W R I I T I I S K I N I S N S - K - K : D G E - Y I Q L F L K - I F Q I L K N K : K M E N N . . : . . . . 73441 TTACATGTAAAGTAC : AAGAAACAGAGAAGCAAACATGGCTTCTTCTTCTTCCTCTTCTTC L H V K Y : K K Q R S K H G F F F F L F F Y M - S T : R N R E A N M A S S S S S S S I T C K V : Q E T E K Q T W L L L L P L L . . . . . . 73204 TTCTTCAGTGGCTCTCAGTTTTCTCTACCAAAACCCCATTAAAGCTTCACTCTCAATTCC F F S G S Q F S L P K P H - S F T L N S S S V A L S F L Y Q N P I K A S L S I P L L Q W L S V F S T K T P L K L H S Q F . . . . . . 73144 AAAAGCTCTTTCTCCTTACTCAAAACTCACATTCCCATCTATTGCGACCTTTTATTCTGC K S S F S L L K T H I P I Y C D L L F C K A L S P Y S K L T F P S I A T F Y S A Q K L F L L T Q N S H S H L L R P F I L . . . . . . 73084 AATTCCCCGTTTCGATTACAGTAATTTCAGAAAAATCAATCCATGTCTTCATTGCAGCAA N S P F R L Q - F Q K N Q S M S S L Q Q I P R F D Y S N F R K I N P C L H C S N Q F P V S I T V I S E K S I H V F I A A . . . . : . . 73024 TCTTCCTACTGCTTCCACAAATAACACGCATTACGAG : TTTTCAGATGGCTCCTCTGAGGT S S Y C F H K - H A L R : V F R W L L - G L P T A S T N N T H Y E : F S D G S S E V I F L L L P Q I T R I T S : F Q M A P L R . . . . . . 72016 GGAGCTAAGATTAGAACTTGGGCAGGGAGATGTAACTCCTAAGGATATATATGTAGATGC G A K I R T W A G R C N S - G Y I C R C E L R L E L G Q G D V T P K D I Y V D A W S - D - N L G R E M - L L R I Y M - M . . . . . . 71956 AAATGAGAGCTCATTAGCAATTAGAGTACAGCAATCTGGAATTGTTCGGACTCTCATGGA K - E L I S N - S T A I W N C S D S H G N E S S L A I R V Q Q S G I V R T L M E Q M R A H - Q L E Y S N L E L F G L S W . . . . . : . 71896 AACCAGTACTCTGTATGAGAAAATAAAACCTGCAGAGACAATATG : GTACATAGATGAAGA N Q Y S V - E N K T C R D N M : V H R - R T S T L Y E K I K P A E T I W : Y I D E D K P V L C M R K - N L Q R Q Y : G T - M K . . . . . . 71766 TCAATTAGTAATTAGCTTGAAGAAGCAAAACTCCGAGTTGAAATGGCCTGACATTGTGGA S I S N - L E E A K L R V E M A - H C G Q L V I S L K K Q N S E L K W P D I V E I N - - L A - R S K T P S - N G L T L W . . . . . . 71706 GTCTTGGGAGTCCCTAAGTGCTGGAATTACACAACTCCTTAGAGGAACATCAATATACTT V L G V P K C W N Y T T P - R N I N I L S W E S L S A G I T Q L L R G T S I Y L S L G S P - V L E L H N S L E E H Q Y T . . . . . . : 71646 AGTTGGGGAATCTACTGAAATCAACCAGAGGATTGCTCGAGAACTGGCTGTTGGACTAGG : S W G I Y - N Q P E D C S R T G C W T R : V G E S T E I N Q R I A R E L A V G L G : - L G N L L K S T R G L L E N W L L D - : . . . . . . 71258 GTACACTCCACTTTGTACAAAGGAGCTGCTAGAAACATATGCCAAGCAATCAATGGAAAC V H S T L Y K G A A R N I C Q A I N G N Y T P L C T K E L L E T Y A K Q S M E T G T L H F V Q R S C - K H M P S N Q W K . : . . . . . 71198 GT : GGGTTAATGAGGAGGGGTCTGATGCTGTAGCAGAAGCAGAAAGTGCTATACTAGAGAG V : G - - G G V - C C S R S R K C Y T R E : W V N E E G S D A V A E A E S A I L E S R : G L M R R G L M L - Q K Q K V L Y - R . : . . . . . 70864 TCTGAGTAG : CCAAGCCCGTGCTGTTATTGCAACCTTGGGAGGGAAGAAAGGCGCTGCTGG S E - : P S P C C Y C N L G R E E R R C W L S S : Q A R A V I A T L G G K K G A A G V - V : A K P V L L L Q P W E G R K A L L . . 70723 AAGAGTGAACCAATG K S E P M R V N Q E E - T N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-16_AGS-1_PPS_1 (73431 73427,73249 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70711) (frame '2'; 843 bp, 281 residues) 1 STRNREANMA SSSSSSSSSV ALSFLYQNPI KASLSIPKAL SPYSKLTFPS IATFYSAIPR 61 FDYSNFRKIN PCLHCSNLPT ASTNNTHYEF SDGSSEVELR LELGQGDVTP KDIYVDANES 121 SLAIRVQQSG IVRTLMETST LYEKIKPAET IWYIDEDQLV ISLKKQNSEL KWPDIVESWE 181 SLSAGITQLL RGTSIYLVGE STEINQRIAR ELAVGLGYTP LCTKELLETY AKQSMETWVN 241 EEGSDAVAEA ESAILESLSS QARAVIATLG GKKGAAGRVN Q >C08HBa0320P23.1-_PGL-16_AGS-1_PPS_2 (73828 73625) (frame '0'; 201 bp, 67 residues) 1 SKIFVNCIIK CIAQKYMFLH VYIQFFLALY KTETQFIDFC CIKRERRVEG EWRARIVEWP 61 ARVLGER- AGS-2 (74045 73863,73830 73510,73249 73232) SCR (e 0.858 d 0.053 a 0.000,e 0.776 d 0.000 a 0.750,e 0.722) Exon 1 74045 73863 ( 183 n); score: 0.858 Intron 1 73862 73831 ( 32 n); Pd: 0.053 Pa: 0.000 Exon 2 73830 73510 ( 321 n); score: 0.776 Intron 2 73509 73250 ( 260 n); Pd: 0.000 Pa: 0.750 Exon 3 73249 73232 ( 18 n); score: 0.722 PGS (74045 73863,73830 73510,73249 73232) SGN-E394609+ 3-phase translation of AGS-2 (-strand): . . . . . . 74045 TAAAATGTTTGTATATTGTATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCT - N V C I L Y N Y K C I G R R Y M F F S K M F V Y C I I I S V - E E D I C F S L K C L Y I V - L - V Y R K K I Y V F L . . . . . . 73985 CGCTTTATACAAAAACAGAAACACAATTTATACACTTTTGTTATATAAAGCAAGAGAAAA R F I Q K Q K H N L Y T F V I - S K R K A L Y K N R N T I Y T L L L Y K A R E N S L Y T K T E T Q F I H F C Y I K Q E K . . . . . . 73925 TTGTATTTCACTGCAATTGTATAATTCACAATTGTATTCGCTGGCCTTTTCGCTGCAGTA L Y F T A I V - F T I V F A G L F A A V C I S L Q L Y N S Q L Y S L A F S L Q Y I V F H C N C I I H N C I R W P F R C S . : . . . . . 73865 TTT : GAAGTAAAATATTTGTAAATTGTATAATTAAGTGCATTGCACAAAAATATATGTTTT F : E V K Y L - I V - L S A L H K N I C F L : K - N I C K L Y N - V H C T K I Y V F I : - S K I F V N C I I K C I A Q K Y M F . . . . . . 73773 TGCATGTGTATATACAATTTTTTCTCGCTTTATACAAAACAGAAACACAATTTATAGACT C M C I Y N F F S L Y T K Q K H N L - T A C V Y T I F S R F I Q N R N T I Y R L L H V Y I Q F F L A L Y K T E T Q F I D . . . . . . 73713 TCTGTTGTATAAAGCGAGAGAGGCGGGTAGAGGGAGAGTGGCGAGCGAGAATAGTAGAAT S V V - S E R G G - R E S G E R E - - N L L Y K A R E A G R G R V A S E N S R M F C C I K R E R R V E G E W R A R I V E . . . . . . 73653 GGCCAGCAAGAGTTTTGGGAGAGAGGTGACTGGCAAACTTTGACAAACGTTTGCTATGAG G Q Q E F W E R G D W Q T L T N V C Y E A S K S F G R E V T G K L - Q T F A M R W P A R V L G E R - L A N F D K R L L - . . . . . . 73593 ACATAATTAAATCAAACAGTAGTTATTTCATTTATTTTAGGTTATTAATTTACTATTATA T - L N Q T V V I S F I L G Y - F T I I H N - I K Q - L F H L F - V I N L L L Y D I I K S N S S Y F I Y F R L L I Y Y Y . . . : . . 73533 TACAATTATTTCTAAAATAAATAT : AAGAAACAGAGAAGCAAA Y N Y F - N K Y : K K Q R S K T I I S K I N I : R N R E A I Q L F L K - I : - E T E K Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-16_AGS-2_PPS_1 (73828 73625) (frame '0'; 201 bp, 67 residues) 1 SKIFVNCIIK CIAQKYMFLH VYIQFFLALY KTETQFIDFC CIKRERRVEG EWRARIVEWP 61 ARVLGER- AGS-3 (74318 74224,74175 74097) SCR (e 0.842 d 0.000 a 0.000,e 0.899) Exon 1 74318 74224 ( 95 n); score: 0.842 Intron 1 74223 74176 ( 48 n); Pd: 0.000 Pa: 0.000 Exon 2 74175 74097 ( 79 n); score: 0.899 PGS (74318 74224,74175 74097) SGN-E371327- 3-phase translation of AGS-3 (-strand): . . . . . . 74318 TTTTCACATATAACAAACAAAAATATTATATTTATATGTTATAACAAAGTTTGCATAATT F S H I T N K N I I F I C Y N K V C I I F H I - Q T K I L Y L Y V I T K F A - L F T Y N K Q K Y Y I Y M L - Q S L H N . . . . : . . 74258 GCACTCTATAGCAAACATATAAATGTATAATTCGC : TATACATATACAATTGTATGATTTG A L Y S K H I N V - F A : I H I Q L Y D L H S I A N I - M Y N S : L Y I Y N C M I C C T L - Q T Y K C I I R : Y T Y T I V - F . . . . . . 74150 CTGGCTTATTTCACTGCAATTGTATAATGCACAATTGTATAATTTACTGACCTA L A Y F T A I V - C T I V - F T D L W L I S L Q L Y N A Q L Y N L L T A G L F H C N C I M H N C I I Y - P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (+ strand): 77277 77728 AGS-1 (77277 77728) SCR (e 0.998) Exon 1 77277 77728 ( 452 n); score: 0.998 PGS (77277 77728) SGN-E202721+ PGS (77277 77671) SGN-E281398+ 3-phase translation of AGS-1 (+strand): . . . . . . 77277 AATTTTCTCAAAAATAATCCATCTTCTAGTGTATATACATATCATATAGCTAAAAAAAAA N F L K N N P S S S V Y T Y H I A K K K I F S K I I H L L V Y I H I I - L K K K F S Q K - S I F - C I Y I S Y S - K K . . . . . . 77337 AAAACAACTAGCCAAAATAAAGAAAACCTAGAGAGCAACAAAGAGGAGAAGAAGAAAAAG K T T S Q N K E N L E S N K E E K K K K K Q L A K I K K T - R A T K R R R R K R K N N - P K - R K P R E Q Q R G E E E K . . . . . . 77397 GGGTGGAGAGAAAAAAAAAATTGAATCTAGGTATGTACTAAAATTTTTTTTTTTCAGACT G W R E K K N - I - V C T K I F F F Q T G G E K K K I E S R Y V L K F F F F R L G V E R K K K L N L G M Y - N F F F S D . . . . . . 77457 CTCGAAATTTGAACAGTGCCACGTAGAAAGAAGTAACAAGGATATATGGAACTATTCCCA L E I - T V P R R K K - Q G Y M E L F P S K F E Q C H V E R S N K D I W N Y S Q S R N L N S A T - K E V T R I Y G T I P . . . . . . 77517 GCACAACCAGACTTATCCCTAAAAATTAGCCCACCAAACATCAAACCTTCATCATCAACA A Q P D L S L K I S P P N I K P S S S T H N Q T Y P - K L A H Q T S N L H H Q H S T T R L I P K N - P T K H Q T F I I N . . . . . . 77577 TGGAAGAGGAAAATTACAAGTGAAGATGATATTCATATGGATTTAGGGTTTTGTAAAAGA W K R K I T S E D D I H M D L G F C K R G R G K L Q V K M I F I W I - G F V K E M E E E N Y K - R - Y S Y G F R V L - K . . . . . . 77637 GCTCATGTGGTGGAATCAACAAATCCTATTAACACTTCTTCTTCTTCTTGTTTTGACCTT A H V V E S T N P I N T S S S S C F D L L M W W N Q Q I L L T L L L L L V L T F S S C G G I N K S Y - H F F F F L F - P . . . . 77697 TCTTTATCCAATAATCCAACTAAACCTAACCC S L S N N P T K P N L Y P I I Q L N L T F F I Q - S N - T - P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-17_AGS-1_PPS_1 (77493 77726) (frame '1'; 234 bp, 78 residues) 1 QGYMELFPAQ PDLSLKISPP NIKPSSSTWK RKITSEDDIH MDLGFCKRAH VVESTNPINT 61 SSSSCFDLSL SNNPTKPN 3-phase translation of AGS-1 (-strand): . . . . . . 77728 GGGTTAGGTTTAGTTGGATTATTGGATAAAGAAAGGTCAAAACAAGAAGAAGAAGAAGTG G L G L V G L L D K E R S K Q E E E E V G - V - L D Y W I K K G Q N K K K K K C V R F S W I I G - R K V K T R R R R S . . . . . . 77668 TTAATAGGATTTGTTGATTCCACCACATGAGCTCTTTTACAAAACCCTAAATCCATATGA L I G F V D S T T - A L L Q N P K S I - - - D L L I P P H E L F Y K T L N P Y E V N R I C - F H H M S S F T K P - I H M . . . . . . 77608 ATATCATCTTCACTTGTAATTTTCCTCTTCCATGTTGATGATGAAGGTTTGATGTTTGGT I S S S L V I F L F H V D D E G L M F G Y H L H L - F S S S M L M M K V - C L V N I I F T C N F P L P C - - - R F D V W . . . . . . 77548 GGGCTAATTTTTAGGGATAAGTCTGGTTGTGCTGGGAATAGTTCCATATATCCTTGTTAC G L I F R D K S G C A G N S S I Y P C Y G - F L G I S L V V L G I V P Y I L V T W A N F - G - V W L C W E - F H I S L L . . . . . . 77488 TTCTTTCTACGTGGCACTGTTCAAATTTCGAGAGTCTGAAAAAAAAAAATTTTAGTACAT F F L R G T V Q I S R V - K K K I L V H S F Y V A L F K F R E S E K K K F - Y I L L S T W H C S N F E S L K K K N F S T . . . . . . 77428 ACCTAGATTCAATTTTTTTTTTCTCTCCACCCCTTTTTCTTCTTCTCCTCTTTGTTGCTC T - I Q F F F S L H P F F F F S S L L L P R F N F F F L S T P F S S S P L C C S Y L D S I F F F S P P L F L L L L F V A . . . . . . 77368 TCTAGGTTTTCTTTATTTTGGCTAGTTGTTTTTTTTTTTTTAGCTATATGATATGTATAT S R F S L F W L V V F F F L A I - Y V Y L G F L Y F G - L F F F F - L Y D M Y I L - V F F I L A S C F F F F S Y M I C I . . . . 77308 ACACTAGAAGATGGATTATTTTTGAGAAAATT T L E D G L F L R K H - K M D Y F - E N Y T R R W I I F E K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 18 (+ strand): 80317 80954 AGS-1 (80317 80359,80502 80954) SCR (e 1.000 d 0.996 a 0.989,e 0.998) Exon 1 80317 80359 ( 43 n); score: 1.000 Intron 1 80360 80501 ( 142 n); Pd: 0.996 Pa: 0.989 Exon 2 80502 80954 ( 453 n); score: 0.998 PGS (80317 80359,80502 80954) SGN-E555338+ 3-phase translation of AGS-1 (+strand): . . . . . : . 80317 ATGTATCGGACTGTAAAGACAACTGATAGATCAGCTTCTTCAG : GCCAATCTGAAGTATTC M Y R T V K T T D R S A S S : G Q S E V F C I G L - R Q L I D Q L L Q : A N L K Y S V S D C K D N - - I S F F R : P I - S I . . . . . . 80519 GACAATTTGTCATCTGGAGATACATCAGAGGAATTGATGGTTGATGAATATTTTGATCCA D N L S S G D T S E E L M V D E Y F D P T I C H L E I H Q R N - W L M N I L I Q R Q F V I W R Y I R G I D G - - I F - S . . . . . . 80579 AAGTCTAAATTGATATAATAGATGAATTTAGTTGACACTCAGAGACTCTAAATCCTGCAT K S K L I - - M N L V D T Q R L - I L H S L N - Y N R - I - L T L R D S K S C I K V - I D I I D E F S - H S E T L N P A . . . . . . 80639 CTGCCTCTGATCGAAAATGAAGAATGTTCAAGAAAGTTTGTTCAACAAGATGAAAGGAAT L P L I E N E E C S R K F V Q Q D E R N C L - S K M K N V Q E S L F N K M K G I S A S D R K - R M F K K V C S T R - K E . . . . . . 80699 ATTCATGGTGAACTTTTATATGCTATTATAAATCTTCATGGTGAAATTTCATATGCTATT I H G E L L Y A I I N L H G E I S Y A I F M V N F Y M L L - I F M V K F H M L L Y S W - T F I C Y Y K S S W - N F I C Y . . . . . . 80759 ATAAAAAATTATTCCCAAAAAAATGAATTTGTATTTCTTTTATAGCCAAAAGGGTCTTAG I K N Y S Q K N E F V F L L - P K G S - - K I I P K K M N L Y F F Y S Q K G L R Y K K L F P K K - I C I S F I A K R V L . . . . . . 80819 GGTGAATGCTAAACCCTAGTAAATAATGATGGACCTATATTTGTGGAAATTAGTTTTTGT G E C - T L V N N D G P I F V E I S F C V N A K P - - I M M D L Y L W K L V F V G - M L N P S K - - W T Y I C G N - F L . . . . . . 80879 GCCAAAAGCAAAGAGGGCACTAGTTGTTCGACAGTGTAAAGAATTTTTATAATATTGTGA A K S K E G T S C S T V - R I F I I L - P K A K R A L V V R Q C K E F L - Y C D C Q K Q R G H - L F D S V K N F Y N I V . . 80939 TTGAAATGTTATTTAA L K C Y L - N V I - I E M L F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 19 (+ strand): 88106 88427 AGS-1 (88106 88427) SCR (e 0.896) Exon 1 88106 88427 ( 322 n); score: 0.896 PGS (88106 88403) SGN-E540411- PGS (88110 88427) SGN-E540411+ PGS (88192 88427) SGN-E540414- 3-phase translation of AGS-1 (+strand): . . . . . . 88106 TAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTC - V P P Q P M P E I P K T H L Y Y T K V K Y P L N L C P K S Q R H T Y T I L R S S T P S T Y A R N P K D T L I L Y - G . . . . . . 88166 CTATTACCCCCCTGAACTTATTTTATAAGTAATTTTTTACCCCTTTTTAGCCTACGTGGC L L P P - T Y F I S N F L P L F S L R G Y Y P P E L I L - V I F Y P F L A Y V A P I T P L N L F Y K - F F T P F - P T W . . . . . . 88226 ACTAGTTTGAAAAAAAAGTCAACCTTTGTTGGGCCCACAAAATAGTGCCACGTAGGTCGA T S L K K K S T F V G P T K - C H V G R L V - K K S Q P L L G P Q N S A T - V E H - F E K K V N L C W A H K I V P R R S . . . . . . 88286 AAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGTAATAGGACCTTAGTATAGTA K G V K N Y - - N K F R G - - D L S I V K G - K I I N K I S S G G N R T L V - Y K R G K K L L I K - V Q G V I G P - Y S . . . . . . 88346 TAAGTGTGTCTCTGAGATTTCGGGCATAGGTTAAAGAAGTACTTGGACATTATCCCTTAA - V C L - D F G H R L K K Y L D I I P - K C V S E I S G I G - R S T W T L S L K I S V S L R F R A - V K E V L G H Y P L . . . 88406 AATTAAGTAAATATACGAAAAT N - V N I R K I K - I Y E N K L S K Y T K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 88427 ATTTTCGTATATTTACTTAATTTTAAGGGATAATGTCCAAGTACTTCTTTAACCTATGCC I F V Y L L N F K G - C P S T S L T Y A F S Y I Y L I L R D N V Q V L L - P M P F R I F T - F - G I M S K Y F F N L C . . . . . . 88367 CGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTT R N L R D T L I L Y - G P I T P - T Y F E I S E T H L Y Y T K V L L P P E L I L P K S Q R H T Y T I L R S Y Y P L N L F . . . . . . 88307 ATTAATAATTTTTTACCCCTTTTCGACCTACGTGGCACTATTTTGTGGGCCCAACAAAGG I N N F L P L F D L R G T I L W A Q Q R L I I F Y P F S T Y V A L F C G P N K G Y - - F F T P F R P T W H Y F V G P T K . . . . . . 88247 TTGACTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAAAAAATTACTTATAA L T F F S N - C H V G - K G V K N Y L - - L F F Q T S A T - A K K G - K I T Y K V D F F F K L V P R R L K R G K K L L I . . . . . . 88187 AATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTTTGGGATTTCGG N K F R G V I G P - Y S I S V S L G F R I S S G G - - D L S I V - V C L W D F G K - V Q G G N R T L V - Y K C V F G I S . . . 88127 GCATAGGTTGAGGGGGTACTTA A - V E G V L H R L R G Y L G I G - G G T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:25:04 2006