GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 21 21:43:59 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-T6GFz/C08SLe0082C24/C08SLe0082C24.seq.screen ________________________________________________________________________________ Sequence 1: C08SLe0082C24.1, from 1 to 130339, both strands analyzed. ... started at: Mon Aug 21 21:56:19 2006 EST library file: /tmp/cxgn-bacpublish-resources-6GEDrp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 24 EST library file: /tmp/cxgn-bacpublish-resources-6GEDrp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 20 ******************************************************************************** EST sequence 39 -strand 1478 n (File: SGN-U318850-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTAGGGATTT TTTAATTAAT AAACAAATTA 61 TTTAATGAAA AGAAATGAAA AAAAAATTAA AAAAAGGAGG AAAAAAAGAA ATTAAAATAG 121 AAGCCATAAA GAGATGTCAC ATCAGCTCCT CTACTATCCT CATTTATATA TATATATATA 181 TATATTGATT TGACCTTTTA TCTTTCAACT TATGCTCTAA CAACAATATT GTGAAAAGAT 241 GGAAATAATA TTTTACTATT GTCAAATTTT TTTCATTTTT AGTTCATCAA AAAAAAAAAG 301 TCACATTATT ATAATCAAAA ACAATTTAAC TAGCGGAAAA AATCTATGTA GAGAAAGAAT 361 GAACAATTCA TTTACTAATA CCAAAAGTGC ATTTACATTT TACAGAACCC TAAATCTGAA 421 ACTTGTAAAT CAACAAAAAA CTCTATTTTT CTGTTATGTT CATATTTGAA CATTTGGATG 481 GATGTATCAA GAAGTCATGT TGACGTGAAC TGTTGCATTC ATATTTGAAT TACATACTGG 541 GCAAACATCC TGTAAACTTG ACCCACATAC TGTGCATAAA CACAAGTGTC TGCACGGCAA 601 CAGTAACACA CATGATTCCC TCTCTCCACA CCTTCTGCAC ATTCTGTTTC TCTTATCCTG 661 CGCTTCTCCA GCTAAAATGC GCACTCCCCC TTCTTCTTCT TCACCACCAT TACCATCCTC 721 TTCCTCCTCG TTGTTGTTGT TGTTGTTGCT GCTGCTGCTG CTGCCGCAGC ATGACTCGGC 781 ATCTTCCTCC ACGGAGAGGC GTTCGTCGGT GACGTGTGCA AGGACCTGTT CTAAGTTGCT 841 GCGGAGTGAA TTGGCTGTGG CTTCGTTGGT TTGTGCTAAA TCTCTCCATA GTTGATTTTC 901 CATGTAAAGA GTCTTTAATT TTTCTTGTAA GACTTGATTG ATTTTTCCTA TTCTCTGTAT 961 TTGTTCGTCT TTTTCCTTCA TTTTCTTCAT TACTCGTTCG CTTACTGCTG ATACCAGCAT 1021 TCTCGATTGA TGTTTCTGTT GCTCTTCTAA TTCCAATCTT ATTTTCTTCG TATGGTGAGA 1081 AATAATGGAA TTGATATCTA ACTGATACTG TTGAACGAGT GGCAAAACAT CATCACCGAC 1141 AAACGATAAG GATGGAATTT GAGAGAGTCC ATTGCAGTGT TTGTGAGGTG TAGAGAAAGA 1201 AGGAGTGAAT GAATCTCTTG AACGTTTCCT TGGAGCGACT ACATCATTTG TGGGTAAATG 1261 AAAAGTAAGA CCACTCTCAG TATTCACCGA TGTCTTAGGC AAATAATTCT CCGGCATTGG 1321 AATCAGCCCT GAACCCATCT GGGTATTGTA AACAAATCCA TTCAAATTCC TTTGTTGATT 1381 TAAGAGATTG AGATGTCTTG CTTCAACACT AGCCATGAAC AAAATACAGT ATTTTGTTTT 1441 TGTTTTGCAG AAAGAGAGAA AAAGTAGAGA GAGCATGC Predicted gene structure (within gDNA segment 2513 to 17106): Exon 1 3544 3650 ( 107 n); cDNA 89 195 ( 107 n); score: 0.874 Intron 1 3651 5616 (1966 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 5617 5633 ( 17 n); cDNA 196 212 ( 17 n); score: 0.765 Intron 2 5634 6030 ( 397 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 6031 6056 ( 26 n); cDNA 213 235 ( 23 n); score: 0.731 Intron 3 6057 6913 ( 857 n); Pd: 0.351 (s: 0), Pa: 0.756 (s: 0) Exon 4 6914 6939 ( 26 n); cDNA 236 259 ( 24 n); score: 0.615 Intron 4 6940 7028 ( 89 n); Pd: 0.900 (s: 0), Pa: 0.947 (s: 0) Exon 5 7029 7053 ( 25 n); cDNA 260 282 ( 23 n); score: 0.560 Intron 5 7054 8402 (1349 n); Pd: 0.586 (s: 0), Pa: 0.000 (s: 0.58) Exon 6 8403 8469 ( 67 n); cDNA 283 348 ( 66 n); score: 0.582 Intron 6 8470 10254 (1785 n); Pd: 0.497 (s: 0.60), Pa: 0.983 (s: 0) Exon 7 10255 10287 ( 33 n); cDNA 349 378 ( 30 n); score: 0.636 Intron 7 10288 14724 (4437 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 8 14725 14734 ( 10 n); cDNA 379 388 ( 10 n); score: 0.700 Intron 8 14735 15432 ( 698 n); Pd: 0.000 (s: 0), Pa: 0.829 (s: 0) Exon 9 15433 15451 ( 19 n); cDNA 389 405 ( 17 n); score: 0.684 PPA cDNA 32 1 MATCH C08SLe0082C24.1+ SGN-U318850- 0.761 330 0.223 C PGS_C08SLe0082C24.1+_SGN-U318850- (3544 3650,5617 5633,6031 6056,6914 6939,7029 7053,8403 8469,10255 10287,14725 14734,15433 15451) Alignment (genomic DNA sequence = upper lines): AAAAAAAAGA GGAAAAAAAG AAATTGAAAT AGAGGCCATA GAGAGGTG-C ACATCAGCTC 3602 ||||||| || |||||||||| ||||| |||| ||| |||||| |||| || | |||||||||| AAAAAAAGGA GGAAAAAAAG AAATTAAAAT AGAAGCCATA AAGAGATGTC ACATCAGCTC 148 CTCTATGATC CTCCTTTATA TATATATATA TATATATTGA TTTGTATTGT TTTGAAATAT 3662 ||||| ||| ||| |||||| |||||||||| |||||||||| |||| | CTCTACTATC CTCATTTATA TATATATATA TATATATTGA TTTG-ACC.. .......... 195 TAATATTTAA TAGGTAAGTA GAATGATATT TTGTATTATA ATTTCATCTT CATCATTTTA 3722 .......... .......... .......... .......... .......... .......... 195 AATGGTTATT TTTTCAACTG TTTATAAATT CCTGAATTTA CATGGGACAA TTATTATATT 3782 .......... .......... .......... .......... .......... .......... 195 CTTATTTTGT CATATTTGCC TTATTCTTAT GTTTACTTCG TATTTCTTTT TTTTTATGTC 3842 .......... .......... .......... .......... .......... .......... 195 ATTTTAATTT TTAATTGATT AGCTAAATTT TTATGTATAA ATTTAAGGAA TCCCATAGTG 3902 .......... .......... .......... .......... .......... .......... 195 TAATACAATA ATTACATTCT GTCTCGACAA ATTTAGTATT TACTAATAAT CCCTTAAAAT 3962 .......... .......... .......... .......... .......... .......... 195 TGTTGTGGCG TGATACATTA GTATGGTGTG ATACATGGTA AATGATACAC AATAACTTAA 4022 .......... .......... .......... .......... .......... .......... 195 AACTGTTAAG ATTAAAAGGG GAAAAAATGG AACATTTAAA TTTGTTATCT AAATCAGCTT 4082 .......... .......... .......... .......... .......... .......... 195 AAATTATGGT AACAGTTCAT TAATAAGCAT TAATTCAGCA CGTAATTTGA TAACAATTTC 4142 .......... .......... .......... .......... .......... .......... 195 AAATTTTGAA AATTCAAGAT TATATCATCT AGTTTGAAGA TATTTTTATG AACATCCAGT 4202 .......... .......... .......... .......... .......... .......... 195 TATTAAACTT ATTGCTAATA CATGATAACA ATTTTTAAAA ACTCGTGATA CATAGAAAAT 4262 .......... .......... .......... .......... .......... .......... 195 CATATGATGC ACATCAAATT CATGTATCAA TGCATCGTCT AAACACTATA ACACACTGAG 4322 .......... .......... .......... .......... .......... .......... 195 TCGATATGTG TCAGCAAGCA CACTTGATGA CGCAGTTATT AAACTTATTG ACTGATACAT 4382 .......... .......... .......... .......... .......... .......... 195 GATAACAATT TTCAAAAACT CTTGATACAT AGGATATCAT ATGATACACA TCTAATTCAT 4442 .......... .......... .......... .......... .......... .......... 195 GTATCAATGC ATCGACTAAC ACGCTATAAC ACACTGAGTA CTTATGTATT AAACTTATTG 4502 .......... .......... .......... .......... .......... .......... 195 TCTGATACAT GATAACAATT TTTAAAAATT CATGATACAT ATGGGATTCC TTTACTAAAA 4562 .......... .......... .......... .......... .......... .......... 195 TTTTTACTAA TTTCAACAAC AATGGTTGCT GCTTCTTTTC TCCTTTTTTG GTGTATTTTG 4622 .......... .......... .......... .......... .......... .......... 195 TCAACCTTTG ATTTAAATGA TTCGCCAAAA TCTTTGTTTG AATCCTTCCG ATTATTCATA 4682 .......... .......... .......... .......... .......... .......... 195 GGATCATGCA AAGACTTTTT TCTATTTTCT TTCCAATTTT CACCGTACGA ATCATAAATC 4742 .......... .......... .......... .......... .......... .......... 195 CTTCTATTAG TAAAAGGATA CATTAATATA ATGTAATAGA ACAATGAACA AAAAAAAAAG 4802 .......... .......... .......... .......... .......... .......... 195 AACGGATGAT GGAGTAAGAA GAAAAAGAAG ACCTAGAGAC GACTGATGTA ATATAGCAAT 4862 .......... .......... .......... .......... .......... .......... 195 GAACAAGAAG AAAATAAGAA CAGATGATGG ATTAAGAAGA AGAAGAACTA CAGACGGATG 4922 .......... .......... .......... .......... .......... .......... 195 ATGGAGTAAG AAGAAGAACC AGAGAACAAT GGTCCAATTT TCAGAAATTT CATATTTTTT 4982 .......... .......... .......... .......... .......... .......... 195 GGATTTTGAA ATTCAAAATT TCATATTAAA TGTTGTGAAA CGTTTTTAAT TAAAATTAAT 5042 .......... .......... .......... .......... .......... .......... 195 AATTCAAAAT TCAAAAAGTG ATTCAAAAGA TTGAGTGTTT TAGTGGAGAA AAAATAGGCA 5102 .......... .......... .......... .......... .......... .......... 195 TGATATTGGG GAAGTGTGTG TTATAGGAGA GAGAAGGTTA TGTATCTCTA AACTTCTACT 5162 .......... .......... .......... .......... .......... .......... 195 AAAATTAAAA AAAAAGGGAA TTATGTAATA TTTAAAAAAA AGAAGGGAAA ATTAGAGAAT 5222 .......... .......... .......... .......... .......... .......... 195 ACTAAATTTA TAGTTATGTA TTTAAGTTAT TTTTCCAATT TTGATTCAGA TTATTATTTT 5282 .......... .......... .......... .......... .......... .......... 195 TAATATATAA TTATTTTTTC CTTTTTCCTG GTTTCATTTC TTTGGGATAT ATTACATAAT 5342 .......... .......... .......... .......... .......... .......... 195 GTTCAATTTG GATATAATAG CACCATATTA GACTATTAGT TTGTTATGAA GTGGAAAATG 5402 .......... .......... .......... .......... .......... .......... 195 AGTTTAAATA CAATTTTGAA TTTTTTAGTC TCAGCATGGA ACATGATTCA TATCAAATAA 5462 .......... .......... .......... .......... .......... .......... 195 GTTATATAAC TAATTATATG TGATAAAATA TTTTGAGTTT TTATTTTATA GAATTTTTCA 5522 .......... .......... .......... .......... .......... .......... 195 TAATATAAAT CGTACAATAA GTATATATTA TTATTATATA TATATAAGCA CTCATACTTG 5582 .......... .......... .......... .......... .......... .......... 195 GATGAAAAAA ACTTAATATG TTAAATTAAT TCAGTTTTAT GTTTTAACTA TGTATCTTTA 5642 |||||| ||| |||| .......... .......... .......... ....TTTTAT CTTTCAACTT A......... 212 TTACGAGCCA AGTCTTTTTA TTAATATACT CCCTTCGTTC ATAATTATTT ATCATGTTGC 5702 .......... .......... .......... .......... .......... .......... 212 GTTATTAAAA GTTAATTTGA TTAATTTTTA AAAATGAATT AATATATTAA TTTGATATTT 5762 .......... .......... .......... .......... .......... .......... 212 TTTTTAAAAT TAGATTTTTT AAAACTATAT AAAAAATACT ATAAATTATA ATTTTTTACA 5822 .......... .......... .......... .......... .......... .......... 212 TATTAATATG ATAAAAGAAT ACATCTTAAT ATATTAGTCA AAATTTTTAT AATTTAACTT 5882 .......... .......... .......... .......... .......... .......... 212 TAAAAATAGA AAAACATAAC AAACAATATC GAATGGAGAG AATATTATGT TTATATCTTA 5942 .......... .......... .......... .......... .......... .......... 212 AAATAACTAT TTATAAACCG TGAAATAACA ACTAATATAA AATGCATTCA CAAGACAAAA 6002 .......... .......... .......... .......... .......... .......... 212 AAAACTACCA TCACCACGTG TCAAAAAGTG CACTCAACAA TTATAATTAT GAACGCAATC 6062 || | || ||||| || ||| | ||| .......... .......... ........TG CTCT-AACAA CAAT-ATTGT GAA-...... 235 AATTATTCAC ATATCACTTT TTTTGATGGA TGTTCGTTCA ATATTTATAT TATTTGATTC 6122 .......... .......... .......... .......... .......... .......... 235 GTATTGATTT AATATAAATT TTGATGAATT TTTTAATATG AATGCGTATG TTAGACTTAC 6182 .......... .......... .......... .......... .......... .......... 235 AACAAAATTA AATTTTATCA AGGTTTCGGT TGAGGAAGCC ATATATGGAC AAGCTACCAT 6242 .......... .......... .......... .......... .......... .......... 235 TTCCAAATAG CATTATTATA TCACCAAAAT GTCACTTCAC TACTCTTTGC TTTGTAAATG 6302 .......... .......... .......... .......... .......... .......... 235 TTAGGGTTTC AAATGGGTCT TTGAAAAAGA AGAAGCCAAA GCTCTTGAAT TGCGCTAATC 6362 .......... .......... .......... .......... .......... .......... 235 TGCTCAGTTC TACAAGTGTA TCTTCGATTC ATCGTTTAAT CAGGTTAATT TTACTCCAAA 6422 .......... .......... .......... .......... .......... .......... 235 GTTTTTAATA TTTTTGGTTA AAAAAAGTGT TTGTGTAGCA ATACTTGAGT TTTGAATTAA 6482 .......... .......... .......... .......... .......... .......... 235 CTTCATTTTG TTAGTAGTGC GTTAAACTGA AAATCATGAT TGAGTTGGAA TTGAAATATT 6542 .......... .......... .......... .......... .......... .......... 235 TGGAATTCAT TTCATAGAAG TTTATGATTT CGTGTTGAGT TTCTGAGCTG AACTCTTGGG 6602 .......... .......... .......... .......... .......... .......... 235 TTTGATCAAA TTGGTGTAAT TTACTGAATT TCATTGGTCC TGTTTTTCCA AATTGAGTTG 6662 .......... .......... .......... .......... .......... .......... 235 GTGAGATGAC TGGATTGAAA TTTTGTTTGA TATAATATGT TAAACGTATT GTAACCTTAT 6722 .......... .......... .......... .......... .......... .......... 235 AAATTTTGCG TAATTCTACT GTTTCGTATG TAGAGGGAGG AGTGTTAATA AGGGGTTTAT 6782 .......... .......... .......... .......... .......... .......... 235 TGGTGCAAGT TTTGTTATGT TGAAGATGGG TGGAATAGAA GGTACAACTG CAATGTCTGA 6842 .......... .......... .......... .......... .......... .......... 235 TGCGAGAACG GGGAACATGA TTTTCGAATC TATTTTGGAG GAAGGAGTCT TTCGTTTTGA 6902 .......... .......... .......... .......... .......... .......... 235 TTGCTCTGCA GATGATAGAA ATGCAGCATT TCCGAGTATT TCCTTTGTTG ATCCAAAAGT 6962 | ||| ||| || | || | | | | .......... .AAGATGGAA AT-AATATTT TACTA-T... .......... .......... 259 TAGGGAGACA CCGTTAATGT CTATACATAA AGTTCCATCA TATATTCCTA CTTTTGAATG 7022 .......... .......... .......... .......... .......... .......... 259 TGTCAGGGGA CAACAAATTG TAAATATTGA GGTAGCATTT TCAGGCCCTG GCAGTTCACT 7082 | ||| | || | || || | | ......-TGT CAA-ATTTTT TTCATTTTTA G......... .......... .......... 282 GCATCTCCTC TTCATGTTAA TAATTTTCTT TTTGACTATG TTATTGATCA AGATTATTTC 7142 .......... .......... .......... .......... .......... .......... 282 TACTTCAATT AAGCTTCCAT CAGGTACCTC ATTCTATGGA ACTGGGGAGG TAAGTGGTCA 7202 .......... .......... .......... .......... .......... .......... 282 GCTTGAAAGA ACTGGGAAAA GGGTGAGTTT CAAATACAAT TCTGATGATA AAGATATACT 7262 .......... .......... .......... .......... .......... .......... 282 GAATATGCTC TTCTACCTAA GCGAGTTGTA TTTTCTCCAT ATATTATGAA TTATAGGCAA 7322 .......... .......... .......... .......... .......... .......... 282 TAAGAAAAAG AATTTACAAG GACTTATGTT TATAGAGAGC AAACTATCCT CAATAAAAAG 7382 .......... .......... .......... .......... .......... .......... 282 ATCAATCAAA TTCTGAGGCA GATCCAGGAT TTTATGTGGA TGGATGCACT ATTATGAAGA 7442 .......... .......... .......... .......... .......... .......... 282 GGCAGATCTA GAATTTATGT TTAACAGGTT TATCCTTTAG GTTCTTACTA TTTAACTCAT 7502 .......... .......... .......... .......... .......... .......... 282 TACACTTTTG AAATTATAGG ATCAAAATTA AATTCTTTTT ACAATTCTAA TGACTTTCAC 7562 .......... .......... .......... .......... .......... .......... 282 ATATACTCCA TGTCGGAACC CGAAAATGTT GGGATTAGTA CAGCTAGTTG ACTATGCTAC 7622 .......... .......... .......... .......... .......... .......... 282 ATCATTCACT GATGCTAGTT TTTTTTTATA AACATTTATT TTGCATAATA TTAAATTGTA 7682 .......... .......... .......... .......... .......... .......... 282 CGGTGACAAA AGTAGAATAG AGCTTCGAAT CTGTCAAAAT TGGGATTTTG AAAGAATAAA 7742 .......... .......... .......... .......... .......... .......... 282 CCTAATAAGA AAGAAGGAAA AAGAGAAGTA CATTTGGGCC CAATTTTCTA ACAAAAGAAA 7802 .......... .......... .......... .......... .......... .......... 282 GAAAAGAATA CCAAGATAAG CATGGAGTTT ACACCACCAA CTTCACTTAT AGAGGCGCAC 7862 .......... .......... .......... .......... .......... .......... 282 CCAATGATTA TTGCACCATA GGACACTTTG AGCTTAAGTA CACAAATATA TATATTGAAG 7922 .......... .......... .......... .......... .......... .......... 282 TGTTTTGTAA AATTATAACA TTATTATACA TATCTAAGGA AAGGAGCATG GTTCATGTGA 7982 .......... .......... .......... .......... .......... .......... 282 ACCCATACCC ATCCACCTAG ATATGCCCCT GGCCAGTCTG ATCTCATGAC ATATCAACAA 8042 .......... .......... .......... .......... .......... .......... 282 AAAGCTGTTA ACTATAGCCT TGCATTGAGG AAGCAAAGGG TAGTTCCGGT CCTGAACATG 8102 .......... .......... .......... .......... .......... .......... 282 TACATTCTAG TGGACTATAC AACAACAACG AACTAGGTCT CAGTTTGCAA CAAGTTGTGG 8162 .......... .......... .......... .......... .......... .......... 282 TCGTTGTGAG GATTCATCAT GAATAGGTTG CTTATGTTGG CTTCCAGCAT ACCACAACCC 8222 .......... .......... .......... .......... .......... .......... 282 CCCTCCTTTT GTGACCAACA ATGTGAGCAA GCTCGCACAT GCGGAGTTGT TATATACATT 8282 .......... .......... .......... .......... .......... .......... 282 AGGGAGTATG GTGTTGAAAG TTGTATTTTG ATCAAGACTA TGAGATCATG TAATGGTAGA 8342 .......... .......... .......... .......... .......... .......... 282 CCATACATAC TGTACATCTT GGAAGAGCTT CACTCGCCTT TAACGCAGTC CTTATATTAA 8402 .......... .......... .......... .......... .......... .......... 282 TTGGAAAAGA AGTTAAAGTT CTGCGGTTTC TAACACATAA CAAATTAACT TCTGGAAAGA 8462 || || | | |||| | | || ||| | || ||| |||||| ||||| | TTCATCAAAA AAAAAAAG-T CACATTATTA TAATCAAAAA CAATTTAACT AGCGGAAAAA 341 GCCTAAGGTG AACAGTCAGC AGCAGTGTAC AGCTTGCTAT TTACTGGTCA GTAGTGTTGA 8522 ||| | ATCTATG... .......... .......... .......... .......... .......... 348 TTTGGAACGG GTGATGAAAC ATAAATCAAA CAAATGCATT TATTTGTGAT CATTTGGGGC 8582 .......... .......... .......... .......... .......... .......... 348 TTAGCAAAAT TAAAGAACCA AAATTTAAGG TGCTGGTTCC TTCAGTAATG GGGATAAAGC 8642 .......... .......... .......... .......... .......... .......... 348 ATGATAAGAA AGACCTACGA AGACCAGTTA AAAAAGACCT ATGAAGAAAC ATGACCTTCC 8702 .......... .......... .......... .......... .......... .......... 348 AAGAGCAAAT CACAAGATGA AAGTGGTTAA CAGAGTTAAA ACACCTGCAA ATTTAATTTT 8762 .......... .......... .......... .......... .......... .......... 348 ATTAATTTCA GATTTTGACA TGGAATACTG ATGCATGGGG TTATGGTCCG GGAACTACGT 8822 .......... .......... .......... .......... .......... .......... 348 CCTTGTATCA ATCACACCCG TGGGTGCTTG CTGTTCTTCC CAGTGGCGAG ACACTTGGAG 8882 .......... .......... .......... .......... .......... .......... 348 TTCTGGCAGA TACAACACAT CGATGTGAGG TATAGCTACT CTACTTTCTA CACCCATGCA 8942 .......... .......... .......... .......... .......... .......... 348 AGCACTTATA TGTGTTTTCT GTTTGTCTTT TTGTGTGTAT TTGTATCTTT TTCTTTTTTG 9002 .......... .......... .......... .......... .......... .......... 348 ATGGCAAGGG AAACCTGTAG CCGCTACCCT TTAGGTGTGC ACAGGGTTAA ACCCCTGCTC 9062 .......... .......... .......... .......... .......... .......... 348 CTATGCAATA GCTTGCAAAC CACATAGGAG AGATAACCCG CACTAAGCAA GCCCGGTGCG 9122 .......... .......... .......... .......... .......... .......... 348 ATGAGCTCGA CCCAGAAGGC AACTCCCCTT CCTTTCGCTG GCAAGGGGTT TTGAACTTGA 9182 .......... .......... .......... .......... .......... .......... 348 GATCTCCAAC ATGGAAGTCC CAAGTCCAAA CCACTGGGCC ACCCTGAATA ATGATTGATG 9242 .......... .......... .......... .......... .......... .......... 348 TATCTATTCA TTACTTTGTA TCTATTCACA TATTCTTTAG TAAACTACAA TTGATGTATC 9302 .......... .......... .......... .......... .......... .......... 348 ACTGAATGAT TGTTATCACT TGTGCAGGTT GACTTGCGAC AAGAATCCAA TATAAGATTT 9362 .......... .......... .......... .......... .......... .......... 348 ATCAGTCGAC AGTCCTTCCC TGTTATTACA TTTGGCCCAT TTCCTTCACC AATTGATGTT 9422 .......... .......... .......... .......... .......... .......... 348 CTTGTATCCC TCTCTCATGC TATCGGTATG GTCTTACACT ATTATGCTTC TTTTTTCAGG 9482 .......... .......... .......... .......... .......... .......... 348 GATATGTGTT CTTCTCTTTA AAATGATTTT CTTATATCTG AGTAGAAAGT AGTGGCCAGG 9542 .......... .......... .......... .......... .......... .......... 348 AGAGGTATCT TTTCACTTCA TTTGTATATC TCAGATCTCA GTCTAAATAA AAATATAATT 9602 .......... .......... .......... .......... .......... .......... 348 GTAAAGCAAT TGAATTCTGT TCGACGGAGT TGTTTAAATG GTTTCTGATG CATCTTATAT 9662 .......... .......... .......... .......... .......... .......... 348 GAGAGATTTT ATAAAACCTA TATTTTGATT CTTCTGCTGC TTTCTCCAAC CCAGAATTTC 9722 .......... .......... .......... .......... .......... .......... 348 TCATTGTCTT TAGATAACAC TCAACTTACT ACATTTGTTA AAATGGTTTA TGACGCATTT 9782 .......... .......... .......... .......... .......... .......... 348 CAATTTTCAT GTTATGAGAA GCTCTTTTAA GCCTATTGGT TTATTTTTAT TGATAATTAA 9842 .......... .......... .......... .......... .......... .......... 348 GCTCAAAATA AAGACTTCTA AATTCTAATT TGAAAAATCT TTATTCCATT CCTCCCAACC 9902 .......... .......... .......... .......... .......... .......... 348 AGCACGGCGT TTTCACTTCC CCTATTTATC ATACTACTTT GTTTGAAGTA ACGGTCACAT 9962 .......... .......... .......... .......... .......... .......... 348 AATTTTGAAT CAGGAACTGT GTTTATGCCT CCAAAGTGGT CCTTGGGTTA TCACCAATGC 10022 .......... .......... .......... .......... .......... .......... 348 CGATGGAGCT ATGTTCCGGA TACTCGTGTT CGTGAGGTAT GGTCATTTCT TTTATGTGAA 10082 .......... .......... .......... .......... .......... .......... 348 CTTGTGAAGT AGTCTATTGC TCTCCTCATA GTGCTTGTTT TGCATTTTTA TTTACTTTGT 10142 .......... .......... .......... .......... .......... .......... 348 TGCTATACTC TGGCTACCTG GATGCACTTT ACATTCTTCC TTTGCCACCA ACTGTTGCTA 10202 .......... .......... .......... .......... .......... .......... 348 ATTTTCTTAT CCTCTTCTTT TTGCCTCCAT TACTTGGGTT GTGGGGGTTT AGGGGTGGAG 10262 | | | .......... .......... .......... .......... .......... ..TAGAGAAA 356 GAATCTAATA ATTGATTATT ACTCAGCTAG GGGCGTAGGA ACCATACAAG CTTTAATTTT 10322 |||| || | ||| | | || ||| | GAAT-GAACA ATTCA-T-TT ACTAA..... .......... .......... .......... 378 GTCCCTTATT TCAAAGCTTG ATTTCATTTG TCTTTTCTTA TCCCCCACAT ATAGTACTGC 10382 .......... .......... .......... .......... .......... .......... 378 TTTATCACTC CCCTCCCCCT TTCCCCAGGT ATACATTTGG CCTTCTAATC TTATATTTCA 10442 .......... .......... .......... .......... .......... .......... 378 GTGTGTCTTA CTTCATGCAG ATTGCAAGGA CCTTTCGGGA GAAGAAGATT CCCTGTGATG 10502 .......... .......... .......... .......... .......... .......... 378 TCATATGGAT GGACATTGAC TACATGAACG GTTTTCGATG TTTTACATTT GATAAGGCAC 10562 .......... .......... .......... .......... .......... .......... 378 GATCTTACTA CTTAATCCTG ATATATAGTT GAAACTTTAG CCAGTTAGTC CAAGTCAATG 10622 .......... .......... .......... .......... .......... .......... 378 ATCTATTTGT CAGATGTTGA TCAAAATTTT CATCTCCGCT TGATAATATT TCCTTTGTAT 10682 .......... .......... .......... .......... .......... .......... 378 ATGTAATAGC AAGAACTCTC ACCTGTAATC CATATAATAT TTGTCTCTGT TGATTAAATT 10742 .......... .......... .......... .......... .......... .......... 378 TCTAGCTATC CAAAAAGGTA TAATAATGCA TAAAGCAGGT AACTGGGAAA AGGATTTTTG 10802 .......... .......... .......... .......... .......... .......... 378 TTTCTTCTCC TTGAAACTCC GTGAGGAGAA TTTTGTTTGA TATTCTTGGT ACTGCAAGCT 10862 .......... .......... .......... .......... .......... .......... 378 ACTTAAAGTT GTAAACTATG TCATATTTCT TATTGTCCAG TTATCTGGGA AGCATTCCAT 10922 .......... .......... .......... .......... .......... .......... 378 TTTGTGTATT TAACTTACTT GGGAAGCTTA CAGCTGGATG CTTCTCTCCC CTACTCCATT 10982 .......... .......... .......... .......... .......... .......... 378 CTTTGCACTT GCTTTGAAAC ATTAATATTC ACAAATAGAC ATAATTTATG AATTTACAGT 11042 .......... .......... .......... .......... .......... .......... 378 GTACTTATCA AAATTATTTT TTGAGCGTGT TTGATCTTGG AAATGCTTGC TTTTTGTATC 11102 .......... .......... .......... .......... .......... .......... 378 TGATATTAAA CAGGTTGTAC TTCATTTGCA TTAGATAGTG TCACCTCTTT CTCTTTTTAT 11162 .......... .......... .......... .......... .......... .......... 378 CTAGTTATGA TAATTTAGGT GAATGCTTTT TTGTTTACCC ATGTAAAACT GACAGATCTT 11222 .......... .......... .......... .......... .......... .......... 378 ATAAACTTTT CTGAACATGG TTGTCAGGAG CGTTTTCCTG ATCCAGAGTC CCTTGTGGAA 11282 .......... .......... .......... .......... .......... .......... 378 GAACTTCATA AATCAGGTTT CAAAGCAATC TGGATGCTTG ATCCAGGGAT TAAGAATGAA 11342 .......... .......... .......... .......... .......... .......... 378 AAGGGATATT TTGCTTATGA TAGTGGTTCT GAAGCAGATG TATGGGTTCA AACAGCGGAT 11402 .......... .......... .......... .......... .......... .......... 378 GGGAGGCCTT ATGTTGGTAT GTGTTTATTT AAACCTTTTT TTTAATCGTT TGTATACATT 11462 .......... .......... .......... .......... .......... .......... 378 TTTCAGACTT GTCATATTTT TATCTCCATC TTTAGGTGAC GTGTGGCCTG GGCCTTGTGT 11522 .......... .......... .......... .......... .......... .......... 378 GTTTCCGGAT TTCACTCAAT TGAAAGCCAG ATCATGGTGG GCTAACCTAG TTAAAGATTT 11582 .......... .......... .......... .......... .......... .......... 378 CATTTCCAAT GGTGTGGACG GTATATGGAA TGACATGAAC GAACCAGCTG TTTTTAAGGT 11642 .......... .......... .......... .......... .......... .......... 378 GGATTATTGA ACGTAAATTT TTCTTAATGT TGTACTGCTT TTTCATCTGA GTCTTTTGTT 11702 .......... .......... .......... .......... .......... .......... 378 GCAGACAGTA ACAAAGACAA TGCCGGAGAA TAATATTCAC AGGGGAGATC CTGAATTTGG 11762 .......... .......... .......... .......... .......... .......... 378 AGGTTGCCAG AATCATTCAT ACTATCACAA TGTATGCCTA CTTTTCCTGC TGTAGCTTTA 11822 .......... .......... .......... .......... .......... .......... 378 TGTGCAAGTT GAATGTGAAA ACATAATACA AGCTCTGAGA GAGAGAGAGA GGTCTACTGG 11882 .......... .......... .......... .......... .......... .......... 378 TGTGCTTGCT GATGAAACTC CTGCTCCTTT ACTTAATGAT GTAATATGCT TATAAACTGA 11942 .......... .......... .......... .......... .......... .......... 378 CTTGGCTGCC TTTTAAGGTT TATGGGATGC TCATGGCACG ATCAACCTAT GAAGGAATGA 12002 .......... .......... .......... .......... .......... .......... 378 AGCTAGCTAA TGGAAATAAA CGTCCTTTTG TTCTCACACG GGCTGGATTT GTGGGTAGCC 12062 .......... .......... .......... .......... .......... .......... 378 AGAGGTATGC TGCTACATGG ACAGGGGATA ACCTTTCTAC ATGGGAGCAC TTGCAGATGA 12122 .......... .......... .......... .......... .......... .......... 378 GTATCCCCAT GGTTCTTCAA CTGGTTAGTA GCTAAGTATA ATCACTTATG TCTCTAAGTT 12182 .......... .......... .......... .......... .......... .......... 378 TATGTCAGAT GCAGGCTTTT CCCTTTTGAA TTATACTGCC TGCTACCCCT CGTACCCGAG 12242 .......... .......... .......... .......... .......... .......... 378 TCTGACACTA ATCATGTAAT ATCTATTTGT TATTTTTATT TAATTTTGTT AATATGACTC 12302 .......... .......... .......... .......... .......... .......... 378 ATTTTGATTA AGCAGACTCC AACAGTTCAC TTCTTTTTGC ATCTTAGGCA GCTTCAACTG 12362 .......... .......... .......... .......... .......... .......... 378 ATATTTTAAA GAATTTATGA AGGATCTACT AAAATGAAGT CTTCAATATT TTTCTGTTTG 12422 .......... .......... .......... .......... .......... .......... 378 ACTCGCCCTA AATCAATTAT AAAAATGATG AAGTTTGCTA AAGGAATGGG ACAATTAACA 12482 .......... .......... .......... .......... .......... .......... 378 GTCAATGAAC TGCTTGCTTT TTATTGAAGA ATTTTTAAGT TGATAAAGTA TCCATGAGAG 12542 .......... .......... .......... .......... .......... .......... 378 ATGATTGCTA TGGTAGATTT ATTGCTTGAT ATTAGTATCT GATTCCTGTC TTGTTTCCAT 12602 .......... .......... .......... .......... .......... .......... 378 CTCTGTGCAA CTAATTAGAA CATGGTTATG TTAATGCAAA GATGTAACAC ACTATATTGC 12662 .......... .......... .......... .......... .......... .......... 378 CCTATGGCTA TCATAGATTC TTTTATACAC TACTTAAAAT TGGTATTTCA AGCTATTAAT 12722 .......... .......... .......... .......... .......... .......... 378 ATTCGTTTCA CTTTTTTCCC TATTTTCTGT TAAGAAATCT TGGCATTTAT TGTTACATGA 12782 .......... .......... .......... .......... .......... .......... 378 CCAGACGTAA ATATCTGTTT CTCGCACAAT TAAATTCCAG AAACCTGTGT GTGTGTGTTG 12842 .......... .......... .......... .......... .......... .......... 378 TACACGTGTA TTATAAATGA GTTCTTTACG AGTAACAGGT ATTGAAACAA ATATATTACT 12902 .......... .......... .......... .......... .......... .......... 378 CTTCTGATGA GGCAACTTTA TATTCAGGGG CTCAGTGGTC AGCCACTTAC AGGACCAGAT 12962 .......... .......... .......... .......... .......... .......... 378 ATAGGTGGCT TTGCTGGAAA TGCAACTCCC CGGATGTTTG GGAGGTGGAT GGGTGTTGGT 13022 .......... .......... .......... .......... .......... .......... 378 TCCCTGTTTC CCTTCTGCCG TGCCCATTCT GAGGCTGACA CAAATGATCA CGAACCTTGG 13082 .......... .......... .......... .......... .......... .......... 378 TCATTTGGGG AGGAGGTCCA CTTCTTCTCT ATAATTATGA TTTATGAGTA GTCAACAATT 13142 .......... .......... .......... .......... .......... .......... 378 TGCAAGTTCT GTTTAGTCAA ATGACTTTTT TTAATGTTTT TATGTCCTAT CCCGTGGTTT 13202 .......... .......... .......... .......... .......... .......... 378 GTCCTGAAAG ATTATCAAAG TTCTGCTTAT GTTCATGCTC AAAAAAGTAT CAAAGCTCTG 13262 .......... .......... .......... .......... .......... .......... 378 CATATGTTTC TGAGTGTAAC CTGGTCCCTG ATGGGAGTTT GAGTTTTCAT GTTATACTCA 13322 .......... .......... .......... .......... .......... .......... 378 TTCATTTCCT CAAGTGCATG CACTCTCTCA ATGCCTGTTA ATGTTTCAAT GATTTATCAA 13382 .......... .......... .......... .......... .......... .......... 378 GTCTCAAACA TTCTTGATCC TTGTTCTGAA ACTTAAAACA TGTAGATTTT ATAAGACCAG 13442 .......... .......... .......... .......... .......... .......... 378 TCACATGACA ATGATACAAT AGTAATTCAC ATGTATTATC TGGATACCAT GTCGAGAAGT 13502 .......... .......... .......... .......... .......... .......... 378 GTGATTTTGT TACACATTTG ATTGCATTGA TGATTACAAC TCTTCCTACA TATATATATG 13562 .......... .......... .......... .......... .......... .......... 378 AAATTCTTTT CTTGGACTTC TTTAAGGTAA TTAAATCTAC AAATAACTGC CGATCACTCT 13622 .......... .......... .......... .......... .......... .......... 378 AGAGGAACAA ATCCCAATTA TTCACTCTGG AGATACAAAT CCGTACAATC ACCCTAACAG 13682 .......... .......... .......... .......... .......... .......... 378 AGATATTCAT TTACTTCCCA TTTAAATGGT CTAAAATAGC CATTTTATTT GCATCAGTTT 13742 .......... .......... .......... .......... .......... .......... 378 TTACACTTTT ATTGCAAGCT CAATATGTTG GTTCTTGGAG AAAAGTTGAA TTTATAACTG 13802 .......... .......... .......... .......... .......... .......... 378 TATGTACATT TGAAGTCAAC CATTGTTTTT TACATGGTTT TGTAAAGAGT TCCATTGCTT 13862 .......... .......... .......... .......... .......... .......... 378 TGTATCTATC TCAAAAAAAA AAGAAGAAAG AGGAAACATT ATTAATTGCG TACGTACTCT 13922 .......... .......... .......... .......... .......... .......... 378 CTGCTCCTGA TATACTTTGG TTTCTGTTTA CCTCATTTCC TGAAGTATGG GTTAATGACT 13982 .......... .......... .......... .......... .......... .......... 378 GGTGTAGTGG TGCTAATAGC ACGCTTTCTT GTTGGCATTC CCCTTGTGGA TGGGTGATCG 14042 .......... .......... .......... .......... .......... .......... 378 CCCTTTTGTC ATGTTCACTC AAGGAAATCG ATGAAGACGG ATATATTTTG ATATAGCTAA 14102 .......... .......... .......... .......... .......... .......... 378 TTGTGCACAG TGGATTACTC TACTTTATTC AAGTGTCTTC TAGATAACTA ACCAGAATAA 14162 .......... .......... .......... .......... .......... .......... 378 TATATACTTT TTCACGTCTA CTCTGTATGT AGATTTCTGA TTTACTTGGG ATCTATCATC 14222 .......... .......... .......... .......... .......... .......... 378 TTAACAGTGC GAGGAAGTTT GCCGCTTGGC ATTGGAGCGG CGCTACCGTC TTCTACCACA 14282 .......... .......... .......... .......... .......... .......... 378 CATTTACACA CTCTTTTACT TAGCACACAC GAGGGGTACT CCGGTCTCTG CTCCTATCTT 14342 .......... .......... .......... .......... .......... .......... 378 TTTTGCTGGT AAATTTTTCG TAACTCAAAA TTTATTTAGC TCCACAATAA ATGTGCATGA 14402 .......... .......... .......... .......... .......... .......... 378 AAGCGTGGCT ATATAGGACA AGATAGTCAA ATTCCATAGT TTTGGCAGGT TAATCATTTG 14462 .......... .......... .......... .......... .......... .......... 378 AAAGGAGTTT TCAAATGTTA GCTATCTTTC TTGGAATTTC TCATTTACTT TCTGTAAAGC 14522 .......... .......... .......... .......... .......... .......... 378 CCAAAAACGA AAAGTTGGTT TATGGTTGTG GCTTTTGTGC AAGTTACTTG ATCCAAAAAT 14582 .......... .......... .......... .......... .......... .......... 378 AACAAATTAG ACATTTCAAT TCAAGGATTT TGGTTTCTTT TTGATCATTA GTTTCAGTTT 14642 .......... .......... .......... .......... .......... .......... 378 ATTCATTCCC TATCGATAAT ATCAAATCTA TTAGTAAATG AATAACATCA ATTTTGTAGT 14702 .......... .......... .......... .......... .......... .......... 378 AATCTGTTTC TTACTCTTGC AGATCCAAAA GACCCCGAGC TGAGGAAACT TGAGAACTCA 14762 |||||| | .......... .......... ..TACCAAAA GT........ .......... .......... 388 TTTTTGCTGG GACCAATTCT TATATATGCA AGGTTTAATT CTTTTTCCTT CACAGATGCG 14822 .......... .......... .......... .......... .......... .......... 388 GTAGTCGGTG ACTGTCAAAC TCTGCATATG TGGTATCCTT TGTTTATGTT CTACAATATA 14882 .......... .......... .......... .......... .......... .......... 388 CCCATTGCTA ATATTCCTGT CTATCAGTCA ACTTCATAGG TGGCATATCT TTCTGGTTTA 14942 .......... .......... .......... .......... .......... .......... 388 TCATTTTAAT CTACAAAGTA GATTAAGGGA AAACCAAAAC ATTTTGCTTG TTCCAGTAGG 15002 .......... .......... .......... .......... .......... .......... 388 TGCCTATGTA AATGCTATCA GAAGAGATAA AAAAAATCGA TTTTTATCAT GGTTAGTAAA 15062 .......... .......... .......... .......... .......... .......... 388 CAGTTAGGAT ACTACATTTT CAACTCTGTT GTAAATAACA GGCTATTGTG ATCTACTTTT 15122 .......... .......... .......... .......... .......... .......... 388 CGTTCCAAAC TATAAGCCTA ATAGACAATT TCTTTTATTA TTTGGCAAGT ATTGGGTATC 15182 .......... .......... .......... .......... .......... .......... 388 AGGTTTTAAG ACGTTACTAA CTCTATCATG AGAAACCTCT TTCAGTCTTT CTTTCATGCT 15242 .......... .......... .......... .......... .......... .......... 388 TCTGGTTGGA TTTTGTCTCA AAAACAGACT GCTAAATACC TTACACTACC TTGACTATAC 15302 .......... .......... .......... .......... .......... .......... 388 AATGCTCTTC ATATATTGGC AACAATAATC CTTGTCTAAG CAGCCCGGTC TGTTATCTAT 15362 .......... .......... .......... .......... .......... .......... 388 TTCATTGGTT TGCTTATCGA CCAATTTCAC TTCCCAAATG ACTGTCTTCA AACACCTCTG 15422 .......... .......... .......... .......... .......... .......... 388 TATTCTCTAG GCAATTGGCA TTCATAGAG 15451 || ||| || || || || .......... GC-ATTTACA TT-TTACAG 405 hqPGS_C08SLe0082C24.1+_SGN-U318850- (3544 3650,5617 5633,6031 6056) ******************************************************************************** EST sequence 8 -strand 1177 n (File: SGN-U335242-) 1 AAATGTCCCC AAGGCAAATA TTTTTTCACA TAAGAATTTC TTGGTGGGAT TTAGGAAAAT 61 CTTTAATTGG GGTAAAGGCC TCTTTGAAAT CCGTGGCCAA ATTTCAGGAC CTCCCTAGAA 121 GTAAATGTCA GAAGAGTAAG GTTATCCCAT CCCGACTTTT TAACCCACTA GCTTAATTTA 181 ATACAGGAAC AAACATCATC ATCCTAAGTT CAGCAGTTAT GTCACCGATT AACTAGACCA 241 TATAACCACC ATTATGTGTT TTCTTTATGG CATTTTGGTA CATGTTCCCT TTGCTAAGCA 301 ACACTGAAGA CGAACTCATT ATCAGGGGGG TTAGAATGGT AGGAATGATA CTGATGTCAG 361 AAATTTATGA ATGTAGCAGT GGCCAATGGA CATTATGCAC AATCCCTTTG ATCAAGAAAC 421 CTAAGTAAAG CCTGCTTCTC AAAGAGAAAG ATATACATAA ATTAAAAGGA AACAGAACTT 481 CAAGATGAAT CTTGTCCAGC CATGATCATG ATAACTGATT ATCTCAGCAC ATGTCTGCAC 541 CAGGATCATT AAGTTACAAC TACTAAGATC AACCTTGCTA GAATTTTTAT CTTACTTCCT 601 GCCCAACTCC CCACTATTCT ATCTCGGAGA AGATCCATTA TTGTACTGGG AATTGGCTGA 661 TGAAATGTTT CTTTTCTCAG ATCAAACATA CCAAATGACA CATGTTTGAG CTTGATGTTT 721 ATAATTAAGA CAAATATATA AAAGATTTCC CCATTGTGAA AGGGAGAACC AGCTCCTCAA 781 CAACTTATGA AACTGCAGAC TACGAGGCAA AACTTAATTT ACAGATTTAT GGTAAGCAAA 841 AACATTACGG ATCTTTGACC TCCATCAGTT GGCTTATAAT TAAATCTGAA TTGCAGATAA 901 GATGACTAAT AATTTTGCAA GGCCAACAGT TACCCTTCAG GGTGGCCCAG TGGTTTGAGC 961 TTGGGACTTC CATGTTGGAG GTCTCAAATT CGAAACCCCT TGCCAGCGAA AGCAAGGGGT 1021 TTGCCTTCTG GGTCGAGCTC GTCGCACCAA GCTTACCTTG TGCAGGTTAC CTCTCCTATG 1081 TGGTTTGCGA GCTATTGCAT AGGAGCGGAA TGCCTCGTGC CGAATTCCTG CAGCCCGGGG 1141 GATCCACTAG TCTAGAGCGG CCGCCCCGGG AGTCAGA Predicted gene structure (within gDNA segment 19790 to 7749): Exon 1 18642 18625 ( 18 n); cDNA 717 734 ( 18 n); score: 0.889 Intron 1 18624 18096 ( 529 n); Pd: 0.000 (s: 0), Pa: 0.414 (s: 0) Exon 2 18095 18075 ( 21 n); cDNA 735 754 ( 20 n); score: 0.667 Intron 2 18074 17998 ( 77 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 17997 17973 ( 25 n); cDNA 755 777 ( 23 n); score: 0.800 Intron 3 17972 16120 (1853 n); Pd: 0.000 (s: 0), Pa: 0.943 (s: 0) Exon 4 16119 16081 ( 39 n); cDNA 778 813 ( 36 n); score: 0.641 Intron 4 16080 15509 ( 572 n); Pd: 0.711 (s: 0), Pa: 0.000 (s: 0) Exon 5 15508 15479 ( 30 n); cDNA 814 841 ( 28 n); score: 0.700 Intron 5 15478 12265 (3214 n); Pd: 0.000 (s: 0), Pa: 0.768 (s: 0) Exon 6 12264 12253 ( 12 n); cDNA 842 852 ( 11 n); score: 0.750 Intron 6 12252 11569 ( 684 n); Pd: 0.000 (s: 0), Pa: 0.365 (s: 0) Exon 7 11568 11538 ( 31 n); cDNA 853 883 ( 31 n); score: 0.677 Intron 7 11537 10718 ( 820 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 8 10717 10705 ( 13 n); cDNA 884 896 ( 13 n); score: 0.769 Intron 8 10704 9585 (1120 n); Pd: 0.509 (s: 0), Pa: 0.690 (s: 0.50) Exon 9 9584 9539 ( 46 n); cDNA 897 940 ( 44 n); score: 0.500 Intron 9 9538 9226 ( 313 n); Pd: 0.112 (s: 0.50), Pa: 0.974 (s: 0.92) Exon 10 9225 9061 ( 165 n); cDNA 941 1104 ( 164 n); score: 0.897 MATCH C08SLe0082C24.1- SGN-U335242- 0.897 400 0.340 C PGS_C08SLe0082C24.1-_SGN-U335242- (18642 18625,18095 18075,17997 17973,16119 16081,15508 15479,12264 12253,11568 11538,10717 10705,9584 9539,9225 9061) Alignment (genomic DNA sequence = upper lines): GTTTATAATT CAGTCAAAAT CTTAACTTGT TTGTTGTAGA AAAGATTCTA GAGAAATGAA 18583 |||||||||| || |||| GTTTATAATT AAGACAAA.. .......... .......... .......... .......... 734 TTGTTGGTAG TATCACATAT GATAAGTGAG CATGTATAGT CTGGATTCTG ATAAAATTAT 18523 .......... .......... .......... .......... .......... .......... 734 CATTTTGGTC TAGTGGACGA CTAAAAGAAC CTCTCGAAGA TATTTAACAT GACCAATTTA 18463 .......... .......... .......... .......... .......... .......... 734 AGTAGTGTAC AAACACTTTT CAGTGTACAC GTCACTAATG TATTAAATAA AGGATACTTA 18403 .......... .......... .......... .......... .......... .......... 734 CAATGTAAAT ATGGACATGA ATAAGCTAGA TGAATATACC AGCAGAAACG CAAAGAAAGT 18343 .......... .......... .......... .......... .......... .......... 734 GAAGGTTATT TAATAACCGA AGAAAAAAAG AACTATGAAG CTCACAATAC CTGAAGGAAC 18283 .......... .......... .......... .......... .......... .......... 734 ATGGTCCATA GAAAGGATTC TACCACCTAT CCAAGGGACC GCTTTCAGCT CCCAATCACC 18223 .......... .......... .......... .......... .......... .......... 734 ACTCTTCAGA ACAACTGGAG TCCTTGAAAG TTCTACTCCT TTATGTCCAG AGATAGTTTC 18163 .......... .......... .......... .......... .......... .......... 734 CACGTCTGGT ATACGTTTAG CACCTTCTGC AATTAATTAA CGACATGGAA ACAAAATTTT 18103 .......... .......... .......... .......... .......... .......... 734 CTTTCAGTTA TAAAACAACT TGCACCATAA GATGTCCAAG AATAGGTAGA CCTATAAAAC 18043 || || || | | | | |||| .......-TA TATAAAAGAT TTCCCCAT.. .......... .......... .......... 754 AGACATCAAA AGTATAGAAC CCCAACTACT CTGCTAATCT GTAAGTGTGA TAATTGGAAA 17983 ||||| || ||| | .......... .......... .......... .......... .....TGTGA -AA-GGGAGA 767 ACCAGCTTCT TAGTTCGTTG ATAGAGAACA CACTGCATTC AACAGCTAAT AGGGGTCCCA 17923 ||||||| || ACCAGCTCCT .......... .......... .......... .......... .......... 777 TGTAGTGTTT TCAAAATAAA TCCTTAAATA GCTTAGGACT CACCACCCTG AAAAGCATGA 17863 .......... .......... .......... .......... .......... .......... 777 AAAATGGAAC ACCTGCAAAA GATTTCCCTT GAATCCTCCT TCAAACCCCC CATGTTTTCA 17803 .......... .......... .......... .......... .......... .......... 777 AGATTTACTA TTCAAGGCTG ACGCGGCAAT CACTCAATCT AGATGACTAC TTAAAGCAGC 17743 .......... .......... .......... .......... .......... .......... 777 AGCCAGACAA ATGTAGAATT TCCGATCAGA AATTAAAATG TTTTTAAAAA AGTACATTAA 17683 .......... .......... .......... .......... .......... .......... 777 ATATGTACCA TCAAGTTGGC AGTCATTTCA GGCAGGAACG GGTGATACAT TAATAGAATT 17623 .......... .......... .......... .......... .......... .......... 777 TGGAAAAGCT TTACCAACTC ATGTTTTTAC ATTTAACCGG AACCTAATGA TTATTTTAGA 17563 .......... .......... .......... .......... .......... .......... 777 TCATCGCTTT TCCCTCTACC TAATAAAAGA AATTTAATGG AAGCAGCAAT ACTGTAGCAT 17503 .......... .......... .......... .......... .......... .......... 777 TCTCTTGTGC ATCTGCATTA AGCACAGAGG AAGCACCACA AATGGGTGAT ACCAGCGTTG 17443 .......... .......... .......... .......... .......... .......... 777 ACGTTAAAGA ATTACAATAG AAGTTCTAGA CATGCTTGAA GTGTGTGACC ATCTCATCTA 17383 .......... .......... .......... .......... .......... .......... 777 AAAGCTTAAG TTGTTATAAG AGCACACTTC TACTATTTAA TTATATTTTC AAAAGCGTTG 17323 .......... .......... .......... .......... .......... .......... 777 AACAGAAACC ACAGAGAGTG TCCAGTAGTG GGTGCAGGTG TCTGACTTGG GTACTACGTT 17263 .......... .......... .......... .......... .......... .......... 777 TAAACAGTGC TGTGCTATCT AGGAAATAAA CTTGAATAGC AATTAAATTT TGCACAGTTC 17203 .......... .......... .......... .......... .......... .......... 777 CATTTCATCT GATGACAGAT CCACTTTTGA CGCAATTCCA AGTAAGAGTT GTGCAGTAAG 17143 .......... .......... .......... .......... .......... .......... 777 AGAGAGCAAA ATATTACAAA AAAGTGAAGC TGGACAAGTG GAAGAGCTGG TTTACCCAGA 17083 .......... .......... .......... .......... .......... .......... 777 CGATTTCTGT ACTTCTCTTC ACTTTCAGAA ACCAAATTTG ATACATCAGT TTCTGATGGC 17023 .......... .......... .......... .......... .......... .......... 777 ATTGCTAATT GTATAATCTC TCCATCAGAA CCCCAAGCAT CAAGCTGGAT AAGGAGATCC 16963 .......... .......... .......... .......... .......... .......... 777 ATAGCAAACA ATCACCAATT AAACACATCT ATCTTAAATG GTCTCTCTTT TTCCTAAAGC 16903 .......... .......... .......... .......... .......... .......... 777 TAATATATAT GAGGAATGAG GAAACATACC ATAGCACCTT TACCCAGCAA TATTCTAACA 16843 .......... .......... .......... .......... .......... .......... 777 TGCAATCGGC GCTTTGGCCT TCTCCAATTT CCTTCTGTTT TGGCGACTTG CACAGTAACA 16783 .......... .......... .......... .......... .......... .......... 777 ACAGAAGACT GAAGCTCAGC AACATATGTC GTCAAAAGAT ATCCACCTTG GCTATATTCA 16723 .......... .......... .......... .......... .......... .......... 777 TATCCATCAC CATCATCTTC GAAAAGAAGA CCTTCAGCTT TACCTGAAAT TGATAAAGTA 16663 .......... .......... .......... .......... .......... .......... 777 TAGGTGATGC TGAGTGCTGT AGCTGCTAAA GAACTCTTTT CCCACATACA GGAGAAAGAA 16603 .......... .......... .......... .......... .......... .......... 777 AAAGAATCTT GGGAGAATTT TCTAGTATTT CTCTTGGCTT GATTCAACAC CTCAGTGCAC 16543 .......... .......... .......... .......... .......... .......... 777 TGTTCCTGTT ATTTCCCAAA TTCCACCAGT GTCCTAGCTC TGTCATTCTG ATTCAGGATA 16483 .......... .......... .......... .......... .......... .......... 777 ACTTATCCTA GAATGCCCCC CCCCCCCCCC GCAAAAAAAA AAAAAAACAT TCTTCCAGGC 16423 .......... .......... .......... .......... .......... .......... 777 CTTACGCCTT CCTTCTATCG AATTTTACAG AAATGGCATC TCATGATAAA TTGATATTTC 16363 .......... .......... .......... .......... .......... .......... 777 ATGAATCCTT CTCTTTTATC AAGTAAAATA ATAACTTTTG ATTGCTCTTT CCTCTTTCTT 16303 .......... .......... .......... .......... .......... .......... 777 ATTTTTTGGC TAGGTCTTTT GGTTGATCTT TCTAGGTGTT ATTCATATTC TGAGATGCAA 16243 .......... .......... .......... .......... .......... .......... 777 TTTTGAAAAC ATGAAAAACA ATTGAGGTTT CCTCTAAATC TAGTTTTATA TTCTGAAGGC 16183 .......... .......... .......... .......... .......... .......... 777 ATTAAGAATT TAATATTCTT AAATGAAATA ATTAATTTGA TTACAAAATT TGGTTAACTT 16123 .......... .......... .......... .......... .......... .......... 777 TAGCACTCAA CAAATGAAAT CGGACAAATT GGGATGGAAA AAGTAAGATG AGATTCCTGA 16063 || ||| | |||||| | | || | | || | ||| | ...CA-ACAA CTTATGAAA- CTG-CAGACT ACGAGGCAAA AC........ .......... 813 TAACTGCTAA ACCAACTAAA CCTAGTTAAC CATAATTTAC CCGGAGTTTG GGAGTCAACT 16003 .......... .......... .......... .......... .......... .......... 813 ATGTTACTAT GACATAAAAG ATAAAAATTA CCATTTTCAT CCAGGGCGAT GAGTAATGTT 15943 .......... .......... .......... .......... .......... .......... 813 AAATCATCAC TAGGATCAGC TTGACCCACA TGCTGATAAA GTGGACCGAC AGGGATGATT 15883 .......... .......... .......... .......... .......... .......... 813 GATCCACCAA GCAAATATAG TGCAGGTAAA TCCTAAAATT TTACAAGAAA TAAAAACAAT 15823 .......... .......... .......... .......... .......... .......... 813 GATAACTAAA AGCAAATTGA AATAGTGATA ATGCTAGTGG TTAATCCAGT TCCCAAGTAT 15763 .......... .......... .......... .......... .......... .......... 813 AAATACCGGA TGTGAATCGT CAAAATCAAA ACTCAACCAA ATGCCCCTTG GTAATTTGTG 15703 .......... .......... .......... .......... .......... .......... 813 ATGAGCTGTA TCCAATTCCT CATCACGCTG AGTGCTGCTC AAATACAAAA TGAGTTAGTA 15643 .......... .......... .......... .......... .......... .......... 813 TATGCATGCA CGTGACAGAT TAAACCATCC ACACTGACCC ATATATATGA AAATAAGCAG 15583 .......... .......... .......... .......... .......... .......... 813 TCAAACGAAG TAAATATGGA TTAGGTTAGG CGAAATGAAC CAACTTTCTC CAATCTGAAG 15523 .......... .......... .......... .......... .......... .......... 813 TCTCAATTCT CAACTGCATT ATAAAGACTT ATTAGTTAGC AATATCTCGT TCACTCTAGT 15463 | ||| || ||| || | | || ||| || | .......... ....TTAATT -TACAGATTT A-TGGTAAGC AAAA...... .......... 841 ATATCAGTCA CCTCTATGAA TGCCAATTGC CTAGAGAATA CAGAGGTGTT TGAAGACAGT 15403 .......... .......... .......... .......... .......... .......... 841 CATTTGGGAA GTGAAATTGG TCGATAAGCA AACCAATGAA ATAGATAACA GACCGGGCTG 15343 .......... .......... .......... .......... .......... .......... 841 CTTAGACAAG GATTATTGTT GCCAATATAT GAAGAGCATT GTATAGTCAA GGTAGTGTAA 15283 .......... .......... .......... .......... .......... .......... 841 GGTATTTAGC AGTCTGTTTT TGAGACAAAA TCCAACCAGA AGCATGAAAG AAAGACTGAA 15223 .......... .......... .......... .......... .......... .......... 841 AGAGGTTTCT CATGATAGAG TTAGTAACGT CTTAAAACCT GATACCCAAT ACTTGCCAAA 15163 .......... .......... .......... .......... .......... .......... 841 TAATAAAAGA AATTGTCTAT TAGGCTTATA GTTTGGAACG AAAAGTAGAT CACAATAGCC 15103 .......... .......... .......... .......... .......... .......... 841 TGTTATTTAC AACAGAGTTG AAAATGTAGT ATCCTAACTG TTTACTAACC ATGATAAAAA 15043 .......... .......... .......... .......... .......... .......... 841 TCGATTTTTT TTATCTCTTC TGATAGCATT TACATAGGCA CCTACTGGAA CAAGCAAAAT 14983 .......... .......... .......... .......... .......... .......... 841 GTTTTGGTTT TCCCTTAATC TACTTTGTAG ATTAAAATGA TAAACCAGAA AGATATGCCA 14923 .......... .......... .......... .......... .......... .......... 841 CCTATGAAGT TGACTGATAG ACAGGAATAT TAGCAATGGG TATATTGTAG AACATAAACA 14863 .......... .......... .......... .......... .......... .......... 841 AAGGATACCA CATATGCAGA GTTTGACAGT CACCGACTAC CGCATCTGTG AAGGAAAAAG 14803 .......... .......... .......... .......... .......... .......... 841 AATTAAACCT TGCATATATA AGAATTGGTC CCAGCAAAAA TGAGTTCTCA AGTTTCCTCA 14743 .......... .......... .......... .......... .......... .......... 841 GCTCGGGGTC TTTTGGATCT GCAAGAGTAA GAAACAGATT ACTACAAAAT TGATGTTATT 14683 .......... .......... .......... .......... .......... .......... 841 CATTTACTAA TAGATTTGAT ATTATCGATA GGGAATGAAT AAACTGAAAC TAATGATCAA 14623 .......... .......... .......... .......... .......... .......... 841 AAAGAAACCA AAATCCTTGA ATTGAAATGT CTAATTTGTT ATTTTTGGAT CAAGTAACTT 14563 .......... .......... .......... .......... .......... .......... 841 GCACAAAAGC CACAACCATA AACCAACTTT TCGTTTTTGG GCTTTACAGA AAGTAAATGA 14503 .......... .......... .......... .......... .......... .......... 841 GAAATTCCAA GAAAGATAGC TAACATTTGA AAACTCCTTT CAAATGATTA ACCTGCCAAA 14443 .......... .......... .......... .......... .......... .......... 841 ACTATGGAAT TTGACTATCT TGTCCTATAT AGCCACGCTT TCATGCACAT TTATTGTGGA 14383 .......... .......... .......... .......... .......... .......... 841 GCTAAATAAA TTTTGAGTTA CGAAAAATTT ACCAGCAAAA AAGATAGGAG CAGAGACCGG 14323 .......... .......... .......... .......... .......... .......... 841 AGTACCCCTC GTGTGTGCTA AGTAAAAGAG TGTGTAAATG TGTGGTAGAA GACGGTAGCG 14263 .......... .......... .......... .......... .......... .......... 841 CCGCTCCAAT GCCAAGCGGC AAACTTCCTC GCACTGTTAA GATGATAGAT CCCAAGTAAA 14203 .......... .......... .......... .......... .......... .......... 841 TCAGAAATCT ACATACAGAG TAGACGTGAA AAAGTATATA TTATTCTGGT TAGTTATCTA 14143 .......... .......... .......... .......... .......... .......... 841 GAAGACACTT GAATAAAGTA GAGTAATCCA CTGTGCACAA TTAGCTATAT CAAAATATAT 14083 .......... .......... .......... .......... .......... .......... 841 CCGTCTTCAT CGATTTCCTT GAGTGAACAT GACAAAAGGG CGATCACCCA TCCACAAGGG 14023 .......... .......... .......... .......... .......... .......... 841 GAATGCCAAC AAGAAAGCGT GCTATTAGCA CCACTACACC AGTCATTAAC CCATACTTCA 13963 .......... .......... .......... .......... .......... .......... 841 GGAAATGAGG TAAACAGAAA CCAAAGTATA TCAGGAGCAG AGAGTACGTA CGCAATTAAT 13903 .......... .......... .......... .......... .......... .......... 841 AATGTTTCCT CTTTCTTCTT TTTTTTTTGA GATAGATACA AAGCAATGGA ACTCTTTACA 13843 .......... .......... .......... .......... .......... .......... 841 AAACCATGTA AAAAACAATG GTTGACTTCA AATGTACATA CAGTTATAAA TTCAACTTTT 13783 .......... .......... .......... .......... .......... .......... 841 CTCCAAGAAC CAACATATTG AGCTTGCAAT AAAAGTGTAA AAACTGATGC AAATAAAATG 13723 .......... .......... .......... .......... .......... .......... 841 GCTATTTTAG ACCATTTAAA TGGGAAGTAA ATGAATATCT CTGTTAGGGT GATTGTACGG 13663 .......... .......... .......... .......... .......... .......... 841 ATTTGTATCT CCAGAGTGAA TAATTGGGAT TTGTTCCTCT AGAGTGATCG GCAGTTATTT 13603 .......... .......... .......... .......... .......... .......... 841 GTAGATTTAA TTACCTTAAA GAAGTCCAAG AAAAGAATTT CATATATATA TGTAGGAAGA 13543 .......... .......... .......... .......... .......... .......... 841 GTTGTAATCA TCAATGCAAT CAAATGTGTA ACAAAATCAC ACTTCTCGAC ATGGTATCCA 13483 .......... .......... .......... .......... .......... .......... 841 GATAATACAT GTGAATTACT ATTGTATCAT TGTCATGTGA CTGGTCTTAT AAAATCTACA 13423 .......... .......... .......... .......... .......... .......... 841 TGTTTTAAGT TTCAGAACAA GGATCAAGAA TGTTTGAGAC TTGATAAATC ATTGAAACAT 13363 .......... .......... .......... .......... .......... .......... 841 TAACAGGCAT TGAGAGAGTG CATGCACTTG AGGAAATGAA TGAGTATAAC ATGAAAACTC 13303 .......... .......... .......... .......... .......... .......... 841 AAACTCCCAT CAGGGACCAG GTTACACTCA GAAACATATG CAGAGCTTTG ATACTTTTTT 13243 .......... .......... .......... .......... .......... .......... 841 GAGCATGAAC ATAAGCAGAA CTTTGATAAT CTTTCAGGAC AAACCACGGG ATAGGACATA 13183 .......... .......... .......... .......... .......... .......... 841 AAAACATTAA AAAAAGTCAT TTGACTAAAC AGAACTTGCA AATTGTTGAC TACTCATAAA 13123 .......... .......... .......... .......... .......... .......... 841 TCATAATTAT AGAGAAGAAG TGGACCTCCT CCCCAAATGA CCAAGGTTCG TGATCATTTG 13063 .......... .......... .......... .......... .......... .......... 841 TGTCAGCCTC AGAATGGGCA CGGCAGAAGG GAAACAGGGA ACCAACACCC ATCCACCTCC 13003 .......... .......... .......... .......... .......... .......... 841 CAAACATCCG GGGAGTTGCA TTTCCAGCAA AGCCACCTAT ATCTGGTCCT GTAAGTGGCT 12943 .......... .......... .......... .......... .......... .......... 841 GACCACTGAG CCCCTGAATA TAAAGTTGCC TCATCAGAAG AGTAATATAT TTGTTTCAAT 12883 .......... .......... .......... .......... .......... .......... 841 ACCTGTTACT CGTAAAGAAC TCATTTATAA TACACGTGTA CAACACACAC ACACAGGTTT 12823 .......... .......... .......... .......... .......... .......... 841 CTGGAATTTA ATTGTGCGAG AAACAGATAT TTACGTCTGG TCATGTAACA ATAAATGCCA 12763 .......... .......... .......... .......... .......... .......... 841 AGATTTCTTA ACAGAAAATA GGGAAAAAAG TGAAACGAAT ATTAATAGCT TGAAATACCA 12703 .......... .......... .......... .......... .......... .......... 841 ATTTTAAGTA GTGTATAAAA GAATCTATGA TAGCCATAGG GCAATATAGT GTGTTACATC 12643 .......... .......... .......... .......... .......... .......... 841 TTTGCATTAA CATAACCATG TTCTAATTAG TTGCACAGAG ATGGAAACAA GACAGGAATC 12583 .......... .......... .......... .......... .......... .......... 841 AGATACTAAT ATCAAGCAAT AAATCTACCA TAGCAATCAT CTCTCATGGA TACTTTATCA 12523 .......... .......... .......... .......... .......... .......... 841 ACTTAAAAAT TCTTCAATAA AAAGCAAGCA GTTCATTGAC TGTTAATTGT CCCATTCCTT 12463 .......... .......... .......... .......... .......... .......... 841 TAGCAAACTT CATCATTTTT ATAATTGATT TAGGGCGAGT CAAACAGAAA AATATTGAAG 12403 .......... .......... .......... .......... .......... .......... 841 ACTTCATTTT AGTAGATCCT TCATAAATTC TTTAAAATAT CAGTTGAAGC TGCCTAAGAT 12343 .......... .......... .......... .......... .......... .......... 841 GCAAAAAGAA GTGAACTGTT GGAGTCTGCT TAATCAAAAT GAGTCATATT AACAAAATTA 12283 .......... .......... .......... .......... .......... .......... 841 AATAAAAATA ACAAATAGAT ATTACATGAT TAGTGTCAGA CTCGGGTACG AGGGGTAGCA 12223 | ||||| ||| .......... ........AC ATTAC-GGAT .......... .......... .......... 852 GGCAGTATAA TTCAAAAGGG AAAAGCCTGC ATCTGACATA AACTTAGAGA CATAAGTGAT 12163 .......... .......... .......... .......... .......... .......... 852 TATACTTAGC TACTAACCAG TTGAAGAACC ATGGGGATAC TCATCTGCAA GTGCTCCCAT 12103 .......... .......... .......... .......... .......... .......... 852 GTAGAAAGGT TATCCCCTGT CCATGTAGCA GCATACCTCT GGCTACCCAC AAATCCAGCC 12043 .......... .......... .......... .......... .......... .......... 852 CGTGTGAGAA CAAAAGGACG TTTATTTCCA TTAGCTAGCT TCATTCCTTC ATAGGTTGAT 11983 .......... .......... .......... .......... .......... .......... 852 CGTGCCATGA GCATCCCATA AACCTTAAAA GGCAGCCAAG TCAGTTTATA AGCATATTAC 11923 .......... .......... .......... .......... .......... .......... 852 ATCATTAAGT AAAGGAGCAG GAGTTTCATC AGCAAGCACA CCAGTAGACC TCTCTCTCTC 11863 .......... .......... .......... .......... .......... .......... 852 TCTCAGAGCT TGTATTATGT TTTCACATTC AACTTGCACA TAAAGCTACA GCAGGAAAAG 11803 .......... .......... .......... .......... .......... .......... 852 TAGGCATACA TTGTGATAGT ATGAATGATT CTGGCAACCT CCAAATTCAG GATCTCCCCT 11743 .......... .......... .......... .......... .......... .......... 852 GTGAATATTA TTCTCCGGCA TTGTCTTTGT TACTGTCTGC AACAAAAGAC TCAGATGAAA 11683 .......... .......... .......... .......... .......... .......... 852 AAGCAGTACA ACATTAAGAA AAATTTACGT TCAATAATCC ACCTTAAAAA CAGCTGGTTC 11623 .......... .......... .......... .......... .......... .......... 852 GTTCATGTCA TTCCATATAC CGTCCACACC ATTGGAAATG AAATCTTTAA CTAGGTTAGC 11563 || | .......... .......... .......... .......... .......... ....CTTTGA 858 CCACCATGAT CTGGCTTTCA ATTGAGTGAA ATCCGGAAAC ACACAAGGCC CAGGCCACAC 11503 || |||| | |||||| | ||| | CCTCCATCAG TTGGCTTATA ATTAA..... .......... .......... .......... 883 GTCACCTAAA GATGGAGATA AAAATATGAC AAGTCTGAAA AATGTATACA AACGATTAAA 11443 .......... .......... .......... .......... .......... .......... 883 AAAAAGGTTT AAATAAACAC ATACCAACAT AAGGCCTCCC ATCCGCTGTT TGAACCCATA 11383 .......... .......... .......... .......... .......... .......... 883 CATCTGCTTC AGAACCACTA TCATAAGCAA AATATCCCTT TTCATTCTTA ATCCCTGGAT 11323 .......... .......... .......... .......... .......... .......... 883 CAAGCATCCA GATTGCTTTG AAACCTGATT TATGAAGTTC TTCCACAAGG GACTCTGGAT 11263 .......... .......... .......... .......... .......... .......... 883 CAGGAAAACG CTCCTGACAA CCATGTTCAG AAAAGTTTAT AAGATCTGTC AGTTTTACAT 11203 .......... .......... .......... .......... .......... .......... 883 GGGTAAACAA AAAAGCATTC ACCTAAATTA TCATAACTAG ATAAAAAGAG AAAGAGGTGA 11143 .......... .......... .......... .......... .......... .......... 883 CACTATCTAA TGCAAATGAA GTACAACCTG TTTAATATCA GATACAAAAA GCAAGCATTT 11083 .......... .......... .......... .......... .......... .......... 883 CCAAGATCAA ACACGCTCAA AAAATAATTT TGATAAGTAC ACTGTAAATT CATAAATTAT 11023 .......... .......... .......... .......... .......... .......... 883 GTCTATTTGT GAATATTAAT GTTTCAAAGC AAGTGCAAAG AATGGAGTAG GGGAGAGAAG 10963 .......... .......... .......... .......... .......... .......... 883 CATCCAGCTG TAAGCTTCCC AAGTAAGTTA AATACACAAA ATGGAATGCT TCCCAGATAA 10903 .......... .......... .......... .......... .......... .......... 883 CTGGACAATA AGAAATATGA CATAGTTTAC AACTTTAAGT AGCTTGCAGT ACCAAGAATA 10843 .......... .......... .......... .......... .......... .......... 883 TCAAACAAAA TTCTCCTCAC GGAGTTTCAA GGAGAAGAAA CAAAAATCCT TTTCCCAGTT 10783 .......... .......... .......... .......... .......... .......... 883 ACCTGCTTTA TGCATTATTA TACCTTTTTG GATAGCTAGA AATTTAATCA ACAGAGACAA 10723 .......... .......... .......... .......... .......... .......... 883 ATATTATATG GATTACAGGT GAGAGTTCTT GCTATTACAT ATACAAAGGA AATATTATCA 10663 || || ||| ||| .....ATCTG AATTGCAG.. .......... .......... .......... .......... 896 AGCGGAGATG AAAATTTTGA TCAACATCTG ACAAATAGAT CATTGACTTG GACTAACTGG 10603 .......... .......... .......... .......... .......... .......... 896 CTAAAGTTTC AACTATATAT CAGGATTAAG TAGTAAGATC GTGCCTTATC AAATGTAAAA 10543 .......... .......... .......... .......... .......... .......... 896 CATCGAAAAC CGTTCATGTA GTCAATGTCC ATCCATATGA CATCACAGGG AATCTTCTTC 10483 .......... .......... .......... .......... .......... .......... 896 TCCCGAAAGG TCCTTGCAAT CTGCATGAAG TAAGACACAC TGAAATATAA GATTAGAAGG 10423 .......... .......... .......... .......... .......... .......... 896 CCAAATGTAT ACCTGGGGAA AGGGGGAGGG GAGTGATAAA GCAGTACTAT ATGTGGGGGA 10363 .......... .......... .......... .......... .......... .......... 896 TAAGAAAAGA CAAATGAAAT CAAGCTTTGA AATAAGGGAC AAAATTAAAG CTTGTATGGT 10303 .......... .......... .......... .......... .......... .......... 896 TCCTACGCCC CTAGCTGAGT AATAATCAAT TATTAGATTC CTCCACCCCT AAACCCCCAC 10243 .......... .......... .......... .......... .......... .......... 896 AACCCAAGTA ATGGAGGCAA AAAGAAGAGG ATAAGAAAAT TAGCAACAGT TGGTGGCAAA 10183 .......... .......... .......... .......... .......... .......... 896 GGAAGAATGT AAAGTGCATC CAGGTAGCCA GAGTATAGCA ACAAAGTAAA TAAAAATGCA 10123 .......... .......... .......... .......... .......... .......... 896 AAACAAGCAC TATGAGGAGA GCAATAGACT ACTTCACAAG TTCACATAAA AGAAATGACC 10063 .......... .......... .......... .......... .......... .......... 896 ATACCTCACG AACACGAGTA TCCGGAACAT AGCTCCATCG GCATTGGTGA TAACCCAAGG 10003 .......... .......... .......... .......... .......... .......... 896 ACCACTTTGG AGGCATAAAC ACAGTTCCTG ATTCAAAATT ATGTGACCGT TACTTCAAAC 9943 .......... .......... .......... .......... .......... .......... 896 AAAGTAGTAT GATAAATAGG GGAAGTGAAA ACGCCGTGCT GGTTGGGAGG AATGGAATAA 9883 .......... .......... .......... .......... .......... .......... 896 AGATTTTTCA AATTAGAATT TAGAAGTCTT TATTTTGAGC TTAATTATCA ATAAAAATAA 9823 .......... .......... .......... .......... .......... .......... 896 ACCAATAGGC TTAAAAGAGC TTCTCATAAC ATGAAAATTG AAATGCGTCA TAAACCATTT 9763 .......... .......... .......... .......... .......... .......... 896 TAACAAATGT AGTAAGTTGA GTGTTATCTA AAGACAATGA GAAATTCTGG GTTGGAGAAA 9703 .......... .......... .......... .......... .......... .......... 896 GCAGCAGAAG AATCAAAATA TAGGTTTTAT AAAATCTCTC ATATAAGATG CATCAGAAAC 9643 .......... .......... .......... .......... .......... .......... 896 CATTTAAACA ACTCCGTCGA ACAGAATTCA ATTGCTTTAC AATTATATTT TTATTTAGAC 9583 | .......... .......... .......... .......... .......... ........A- 897 TGAGATCTGA GATATACAAA TGAAGTGAAA AGATACCTCT CCTGGCCACT ACTTTCTACT 9523 | |||| ||| | | || || |||| || | | TAAGATGACT AATAATTTTG CAAGGCCAAC AGTTACC-CT TCAG...... .......... 940 CAGATATAAG AAAATCATTT TAAAGAGAAG AACACATATC CCTGAAAAAA GAAGCATAAT 9463 .......... .......... .......... .......... .......... .......... 940 AGTGTAAGAC CATACCGATA GCATGAGAGA GGGATACAAG AACATCAATT GGTGAAGGAA 9403 .......... .......... .......... .......... .......... .......... 940 ATGGGCCAAA TGTAATAACA GGGAAGGACT GTCGACTGAT AAATCTTATA TTGGATTCTT 9343 .......... .......... .......... .......... .......... .......... 940 GTCGCAAGTC AACCTGCACA AGTGATAACA ATCATTCAGT GATACATCAA TTGTAGTTTA 9283 .......... .......... .......... .......... .......... .......... 940 CTAAAGAATA TGTGAATAGA TACAAAGTAA TGAATAGATA CATCAATCAT TATTCAGGGT 9223 ||| .......... .......... .......... .......... .......... .......GGT 943 GGCCCAGTGG TTTGGACTTG GGACTTCCAT GTTGGAGATC TCAAGTTCAA AACCCCTTGC 9163 |||||||||| |||| |||| |||||||||| ||||||| || |||| ||| | |||||||||| GGCCCAGTGG TTTGAGCTTG GGACTTCCAT GTTGGAGGTC TCAAATTCGA AACCCCTTGC 1003 CAGCGAAAGG AAGGGGAGTT GCCTTCTGGG TCGAGCTCAT CGCACCGGGC TTGCTTAGTG 9103 ||||||||| |||||| || |||||||||| |||||||| | |||||| || || | | ||| CAGCGAAAGC AAGGGG-TTT GCCTTCTGGG TCGAGCTCGT CGCACCAAGC TTACCTTGTG 1062 CGGGTTATCT CTCCTATGTG GTTTGCAAGC TATTGCATAG GA 9061 | ||||| || |||||||||| |||||| ||| |||||||||| || CAGGTTACCT CTCCTATGTG GTTTGCGAGC TATTGCATAG GA 1104 hqPGS_C08SLe0082C24.1-_SGN-U335242- (17997 17973,16119 16081,15508 15479,12264 12253,11568 11538,10717 10705,9584 9539,9225 9061) ******************************************************************************** EST sequence 30 +strand 1331 n (File: SGN-U324885+) 1 GCAAACACTG ATATTTACAT GTTTGGGAAG CTCCACGGAG GACTTTAAGT GTTAGCTTAT 61 TGAAAAGAAA AATTAAGAAA CAAAAGAAAA AGAAAATACC TCGAATGTGA AATTTGGAGT 121 AACTTTTGTA TCGTAGAAGC TATTTTTTTA AGAAAGAGTA TACTGTTTAG TACATGATGT 181 GGTGTTGGAA TAATTCAAGT GCACTTGAAT TGAGTTGGGC AAAAGCTAGA GTTGTGTCCT 241 TTAGGGTGGC CCAGTGGTTT GGGTATGGGA CTTCCATGTT GGAGGTTTCA AGTTTGAAAC 301 CCCTTGCCAG CGAAAGCAAG GGGTTTGCCT TCTGGGTCGA GCTCATCGCA TCAGGCTTGC 361 CTAGTGTGGG GTACCTCTCT TGTGTTGTTT GCGAGCAATT GCATAGGAGC GGGGTTTTTT 421 TCTGTGTGCA CCCAAAGGGT AGCAGCTGCT GGTTTCCCTT GTCATTAAAA GAAAAAAGAG 481 CTACCAGAGC TGTAACGGTC TTTTTAAGAT GAGAAATCAA TAATAATCCT TGTAAAAAGT 541 TTTCAGCAAA TATTGGACTT ATTAACTGAA TTGTTTTCTT TAAGTGCTTA CTGAAGCTCT 601 AGGACAATAT CATTAATTTC AGGTCAATGC TGCTGGGGAT CTCTGTGCTA TTTGCCAGGA 661 GAAAATGCAT ACACCAATCT TACTACGTTG TAAACATATA TTCTGTGAAG ACTGTGTGTC 721 TGAATGGTTC GAGAGGGAAA GGACGTGCCC TCTGTGCAGG TCTTTAGTAA AACCTGCCGA 781 TCTAAAATCA TTTGGTGACG GTTCAACTAG TCTCTTTTTC CAGTTATTCT GAAGAAATAA 841 TTGTCGATGA GAGCGAGTCT CTTCAAAAGC TGCCAACTTC ACTAAAAGCA GCTATAGCTG 901 AACCCCCCCC ATCCATGGAA AGAAAGCCTA TTGACACACT TATTTCAGAA TCCTGATCTG 961 TTTGCTCCTG AAAGTTGTCT AATTGGCTCA ACGCAGGCCA TTGTTTATAC ACAGTTCCAC 1021 ACATGGAGCA GGCTATTGTT CATACGTTTG CTCGGAGAAA ATGTTTGTAT CAGTCTATTA 1081 ATCCACAGAA TTGTCAAGTG TACAATGTAT GAAAATAGTG TTGTAGTCAG ATATATATAT 1141 ATCTTTTTAT CCCCATGGCC AGTTAGGTTT CATCCCCTAA ACAAACCTAT ACAGAAAAAT 1201 GCTTATTTGT GCCTATATGT AAAAACAAGC TGGCATCTTT TGGAAAAAAG CATAGTCTTG 1261 GTTGGCTCGA AGATTTTTGG GACCATCATT TAAGTCATAT CCGCAGTGCA TAAAAAAAAA 1321 AAAAAAAAAA A Predicted gene structure (within gDNA segment 12247 to 1): Exon 1 10993 10941 ( 53 n); cDNA 196 244 ( 49 n); score: 0.613 Intron 1 10940 9226 (1715 n); Pd: 0.933 (s: 0.58), Pa: 0.974 (s: 0.90) Exon 2 9225 8983 ( 243 n); cDNA 245 486 ( 242 n); score: 0.833 Intron 2 8982 8747 ( 236 n); Pd: 0.000 (s: 0.77), Pa: 0.888 (s: 0) Exon 3 8746 8731 ( 16 n); cDNA 487 502 ( 16 n); score: 0.625 Intron 3 8730 5161 (3570 n); Pd: 0.000 (s: 0), Pa: 0.800 (s: 0) Exon 4 5160 5144 ( 17 n); cDNA 503 518 ( 16 n); score: 0.647 Intron 4 5143 3146 (1998 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.65) Exon 5 3145 3098 ( 48 n); cDNA 519 564 ( 46 n); score: 0.646 PPA cDNA 1310 1331 MATCH C08SLe0082C24.1- SGN-U324885+ 0.794 377 0.283 C PGS_C08SLe0082C24.1-_SGN-U324885+ (10993 10941,9225 8983,8746 8731,5160 5144,3145 3098) Alignment (genomic DNA sequence = upper lines): CAAGTGCA-A AGAATGGAGT AGGGGAGAGA AGCATCCAGC TGTAAGCTTC CCAAGTAAGT 10935 |||||||| |||| |||| ||| | | | ||| | || ||| ||| | CAAGTGCACT TGAATTGAGT TGGGCA-A-A AGC-TAGAGT TGTGTCCTT- -TAG...... 244 TAAATACACA AAATGGAATG CTTCCCAGAT AACTGGACAA TAAGAAATAT GACATAGTTT 10875 .......... .......... .......... .......... .......... .......... 244 ACAACTTTAA GTAGCTTGCA GTACCAAGAA TATCAAACAA AATTCTCCTC ACGGAGTTTC 10815 .......... .......... .......... .......... .......... .......... 244 AAGGAGAAGA AACAAAAATC CTTTTCCCAG TTACCTGCTT TATGCATTAT TATACCTTTT 10755 .......... .......... .......... .......... .......... .......... 244 TGGATAGCTA GAAATTTAAT CAACAGAGAC AAATATTATA TGGATTACAG GTGAGAGTTC 10695 .......... .......... .......... .......... .......... .......... 244 TTGCTATTAC ATATACAAAG GAAATATTAT CAAGCGGAGA TGAAAATTTT GATCAACATC 10635 .......... .......... .......... .......... .......... .......... 244 TGACAAATAG ATCATTGACT TGGACTAACT GGCTAAAGTT TCAACTATAT ATCAGGATTA 10575 .......... .......... .......... .......... .......... .......... 244 AGTAGTAAGA TCGTGCCTTA TCAAATGTAA AACATCGAAA ACCGTTCATG TAGTCAATGT 10515 .......... .......... .......... .......... .......... .......... 244 CCATCCATAT GACATCACAG GGAATCTTCT TCTCCCGAAA GGTCCTTGCA ATCTGCATGA 10455 .......... .......... .......... .......... .......... .......... 244 AGTAAGACAC ACTGAAATAT AAGATTAGAA GGCCAAATGT ATACCTGGGG AAAGGGGGAG 10395 .......... .......... .......... .......... .......... .......... 244 GGGAGTGATA AAGCAGTACT ATATGTGGGG GATAAGAAAA GACAAATGAA ATCAAGCTTT 10335 .......... .......... .......... .......... .......... .......... 244 GAAATAAGGG ACAAAATTAA AGCTTGTATG GTTCCTACGC CCCTAGCTGA GTAATAATCA 10275 .......... .......... .......... .......... .......... .......... 244 ATTATTAGAT TCCTCCACCC CTAAACCCCC ACAACCCAAG TAATGGAGGC AAAAAGAAGA 10215 .......... .......... .......... .......... .......... .......... 244 GGATAAGAAA ATTAGCAACA GTTGGTGGCA AAGGAAGAAT GTAAAGTGCA TCCAGGTAGC 10155 .......... .......... .......... .......... .......... .......... 244 CAGAGTATAG CAACAAAGTA AATAAAAATG CAAAACAAGC ACTATGAGGA GAGCAATAGA 10095 .......... .......... .......... .......... .......... .......... 244 CTACTTCACA AGTTCACATA AAAGAAATGA CCATACCTCA CGAACACGAG TATCCGGAAC 10035 .......... .......... .......... .......... .......... .......... 244 ATAGCTCCAT CGGCATTGGT GATAACCCAA GGACCACTTT GGAGGCATAA ACACAGTTCC 9975 .......... .......... .......... .......... .......... .......... 244 TGATTCAAAA TTATGTGACC GTTACTTCAA ACAAAGTAGT ATGATAAATA GGGGAAGTGA 9915 .......... .......... .......... .......... .......... .......... 244 AAACGCCGTG CTGGTTGGGA GGAATGGAAT AAAGATTTTT CAAATTAGAA TTTAGAAGTC 9855 .......... .......... .......... .......... .......... .......... 244 TTTATTTTGA GCTTAATTAT CAATAAAAAT AAACCAATAG GCTTAAAAGA GCTTCTCATA 9795 .......... .......... .......... .......... .......... .......... 244 ACATGAAAAT TGAAATGCGT CATAAACCAT TTTAACAAAT GTAGTAAGTT GAGTGTTATC 9735 .......... .......... .......... .......... .......... .......... 244 TAAAGACAAT GAGAAATTCT GGGTTGGAGA AAGCAGCAGA AGAATCAAAA TATAGGTTTT 9675 .......... .......... .......... .......... .......... .......... 244 ATAAAATCTC TCATATAAGA TGCATCAGAA ACCATTTAAA CAACTCCGTC GAACAGAATT 9615 .......... .......... .......... .......... .......... .......... 244 CAATTGCTTT ACAATTATAT TTTTATTTAG ACTGAGATCT GAGATATACA AATGAAGTGA 9555 .......... .......... .......... .......... .......... .......... 244 AAAGATACCT CTCCTGGCCA CTACTTTCTA CTCAGATATA AGAAAATCAT TTTAAAGAGA 9495 .......... .......... .......... .......... .......... .......... 244 AGAACACATA TCCCTGAAAA AAGAAGCATA ATAGTGTAAG ACCATACCGA TAGCATGAGA 9435 .......... .......... .......... .......... .......... .......... 244 GAGGGATACA AGAACATCAA TTGGTGAAGG AAATGGGCCA AATGTAATAA CAGGGAAGGA 9375 .......... .......... .......... .......... .......... .......... 244 CTGTCGACTG ATAAATCTTA TATTGGATTC TTGTCGCAAG TCAACCTGCA CAAGTGATAA 9315 .......... .......... .......... .......... .......... .......... 244 CAATCATTCA GTGATACATC AATTGTAGTT TACTAAAGAA TATGTGAATA GATACAAAGT 9255 .......... .......... .......... .......... .......... .......... 244 AATGAATAGA TACATCAATC ATTATTCAGG GTGGCCCAGT GGTTTGGACT TGGGACTTCC 9195 | |||||||||| ||||||| |||||||||| .......... .......... .........G GTGGCCCAGT GGTTTGGGTA TGGGACTTCC 275 ATGTTGGAGA TCTCAAGTTC AAAACCCCTT GCCAGCGAAA GGAAGGGGAG TTGCCTTCTG 9135 ||||||||| | ||||||| ||||||||| |||||||||| | |||||| |||||||||| ATGTTGGAGG TTTCAAGTTT GAAACCCCTT GCCAGCGAAA GCAAGGGG-T TTGCCTTCTG 334 GGTCGAGCTC ATCGCACCGG GCTTGCTTAG TGCGGGTTAT CTCTCCTATG TGGTTTGCAA 9075 |||||||||| |||||| | | |||||| ||| || ||| || ||||| | || | |||||| | GGTCGAGCTC ATCGCATCAG GCTTGCCTAG TGTGGGGTAC CTCTCTTGTG TTGTTTGCGA 394 GCTATTGCAT AGGAGCAGGG GTTTAACCCT GTGCACACCT AAAGGGTAGC GGCTACAGGT 9015 || ||||||| |||||| ||| |||| || ||| |||| |||||||||| ||| | ||| GCAATTGCAT AGGAGC-GGG GTTTTTTTCT GTGTGCACCC AAAGGGTAGC AGCTGCTGGT 453 TTCCCTTGCC ATCAAAA-AA GAAAAAGATA CAAATACACA CAAAAAGACA AACAGAAAAC 8956 |||||||| | || |||| || ||| || || | | TTCCCTTGTC ATTAAAAGAA AAAAGAGCTA CCA....... .......... .......... 486 ACATATAAGT GCTTGCATGG GTGTAGAAAG TAGAGTAGCT ATACCTCACA TCGATGTGTT 8896 .......... .......... .......... .......... .......... .......... 486 GTATCTGCCA GAACTCCAAG TGTCTCGCCA CTGGGAAGAA CAGCAAGCAC CCACGGGTGT 8836 .......... .......... .......... .......... .......... .......... 486 GATTGATACA AGGACGTAGT TCCCGGACCA TAACCCCATG CATCAGTATT CCATGTCAAA 8776 .......... .......... .......... .......... .......... .......... 486 ATCTGAAATT AATAAAATTA AATTTGCAGG TGTTTTAACT CTGTTAACCA CTTTCATCTT 8716 | | | |||| | || .......... .......... .........G AGCTGTAACG GTCTT..... .......... 502 GTGATTTGCT CTTGGAAGGT CATGTTTCTT CATAGGTCTT TTTTAACTGG TCTTCGTAGG 8656 .......... .......... .......... .......... .......... .......... 502 TCTTTCTTAT CATGCTTTAT CCCCATTACT GAAGGAACCA GCACCTTAAA TTTTGGTTCT 8596 .......... .......... .......... .......... .......... .......... 502 TTAATTTTGC TAAGCCCCAA ATGATCACAA ATAAATGCAT TTGTTTGATT TATGTTTCAT 8536 .......... .......... .......... .......... .......... .......... 502 CACCCGTTCC AAATCAACAC TACTGACCAG TAAATAGCAA GCTGTACACT GCTGCTGACT 8476 .......... .......... .......... .......... .......... .......... 502 GTTCACCTTA GGCTCTTTCC AGAAGTTAAT TTGTTATGTG TTAGAAACCG CAGAACTTTA 8416 .......... .......... .......... .......... .......... .......... 502 ACTTCTTTTC CAATTAATAT AAGGACTGCG TTAAAGGCGA GTGAAGCTCT TCCAAGATGT 8356 .......... .......... .......... .......... .......... .......... 502 ACAGTATGTA TGGTCTACCA TTACATGATC TCATAGTCTT GATCAAAATA CAACTTTCAA 8296 .......... .......... .......... .......... .......... .......... 502 CACCATACTC CCTAATGTAT ATAACAACTC CGCATGTGCG AGCTTGCTCA CATTGTTGGT 8236 .......... .......... .......... .......... .......... .......... 502 CACAAAAGGA GGGGGGTTGT GGTATGCTGG AAGCCAACAT AAGCAACCTA TTCATGATGA 8176 .......... .......... .......... .......... .......... .......... 502 ATCCTCACAA CGACCACAAC TTGTTGCAAA CTGAGACCTA GTTCGTTGTT GTTGTATAGT 8116 .......... .......... .......... .......... .......... .......... 502 CCACTAGAAT GTACATGTTC AGGACCGGAA CTACCCTTTG CTTCCTCAAT GCAAGGCTAT 8056 .......... .......... .......... .......... .......... .......... 502 AGTTAACAGC TTTTTGTTGA TATGTCATGA GATCAGACTG GCCAGGGGCA TATCTAGGTG 7996 .......... .......... .......... .......... .......... .......... 502 GATGGGTATG GGTTCACATG AACCATGCTC CTTTCCTTAG ATATGTATAA TAATGTTATA 7936 .......... .......... .......... .......... .......... .......... 502 ATTTTACAAA ACACTTCAAT ATATATATTT GTGTACTTAA GCTCAAAGTG TCCTATGGTG 7876 .......... .......... .......... .......... .......... .......... 502 CAATAATCAT TGGGTGCGCC TCTATAAGTG AAGTTGGTGG TGTAAACTCC ATGCTTATCT 7816 .......... .......... .......... .......... .......... .......... 502 TGGTATTCTT TTCTTTCTTT TGTTAGAAAA TTGGGCCCAA ATGTACTTCT CTTTTTCCTT 7756 .......... .......... .......... .......... .......... .......... 502 CTTTCTTATT AGGTTTATTC TTTCAAAATC CCAATTTTGA CAGATTCGAA GCTCTATTCT 7696 .......... .......... .......... .......... .......... .......... 502 ACTTTTGTCA CCGTACAATT TAATATTATG CAAAATAAAT GTTTATAAAA AAAAACTAGC 7636 .......... .......... .......... .......... .......... .......... 502 ATCAGTGAAT GATGTAGCAT AGTCAACTAG CTGTACTAAT CCCAACATTT TCGGGTTCCG 7576 .......... .......... .......... .......... .......... .......... 502 ACATGGAGTA TATGTGAAAG TCATTAGAAT TGTAAAAAGA ATTTAATTTT GATCCTATAA 7516 .......... .......... .......... .......... .......... .......... 502 TTTCAAAAGT GTAATGAGTT AAATAGTAAG AACCTAAAGG ATAAACCTGT TAAACATAAA 7456 .......... .......... .......... .......... .......... .......... 502 TTCTAGATCT GCCTCTTCAT AATAGTGCAT CCATCCACAT AAAATCCTGG ATCTGCCTCA 7396 .......... .......... .......... .......... .......... .......... 502 GAATTTGATT GATCTTTTTA TTGAGGATAG TTTGCTCTCT ATAAACATAA GTCCTTGTAA 7336 .......... .......... .......... .......... .......... .......... 502 ATTCTTTTTC TTATTGCCTA TAATTCATAA TATATGGAGA AAATACAACT CGCTTAGGTA 7276 .......... .......... .......... .......... .......... .......... 502 GAAGAGCATA TTCAGTATAT CTTTATCATC AGAATTGTAT TTGAAACTCA CCCTTTTCCC 7216 .......... .......... .......... .......... .......... .......... 502 AGTTCTTTCA AGCTGACCAC TTACCTCCCC AGTTCCATAG AATGAGGTAC CTGATGGAAG 7156 .......... .......... .......... .......... .......... .......... 502 CTTAATTGAA GTAGAAATAA TCTTGATCAA TAACATAGTC AAAAAGAAAA TTATTAACAT 7096 .......... .......... .......... .......... .......... .......... 502 GAAGAGGAGA TGCAGTGAAC TGCCAGGGCC TGAAAATGCT ACCTCAATAT TTACAATTTG 7036 .......... .......... .......... .......... .......... .......... 502 TTGTCCCCTG ACACATTCAA AAGTAGGAAT ATATGATGGA ACTTTATGTA TAGACATTAA 6976 .......... .......... .......... .......... .......... .......... 502 CGGTGTCTCC CTAACTTTTG GATCAACAAA GGAAATACTC GGAAATGCTG CATTTCTATC 6916 .......... .......... .......... .......... .......... .......... 502 ATCTGCAGAG CAATCAAAAC GAAAGACTCC TTCCTCCAAA ATAGATTCGA AAATCATGTT 6856 .......... .......... .......... .......... .......... .......... 502 CCCCGTTCTC GCATCAGACA TTGCAGTTGT ACCTTCTATT CCACCCATCT TCAACATAAC 6796 .......... .......... .......... .......... .......... .......... 502 AAAACTTGCA CCAATAAACC CCTTATTAAC ACTCCTCCCT CTACATACGA AACAGTAGAA 6736 .......... .......... .......... .......... .......... .......... 502 TTACGCAAAA TTTATAAGGT TACAATACGT TTAACATATT ATATCAAACA AAATTTCAAT 6676 .......... .......... .......... .......... .......... .......... 502 CCAGTCATCT CACCAACTCA ATTTGGAAAA ACAGGACCAA TGAAATTCAG TAAATTACAC 6616 .......... .......... .......... .......... .......... .......... 502 CAATTTGATC AAACCCAAGA GTTCAGCTCA GAAACTCAAC ACGAAATCAT AAACTTCTAT 6556 .......... .......... .......... .......... .......... .......... 502 GAAATGAATT CCAAATATTT CAATTCCAAC TCAATCATGA TTTTCAGTTT AACGCACTAC 6496 .......... .......... .......... .......... .......... .......... 502 TAACAAAATG AAGTTAATTC AAAACTCAAG TATTGCTACA CAAACACTTT TTTTAACCAA 6436 .......... .......... .......... .......... .......... .......... 502 AAATATTAAA AACTTTGGAG TAAAATTAAC CTGATTAAAC GATGAATCGA AGATACACTT 6376 .......... .......... .......... .......... .......... .......... 502 GTAGAACTGA GCAGATTAGC GCAATTCAAG AGCTTTGGCT TCTTCTTTTT CAAAGACCCA 6316 .......... .......... .......... .......... .......... .......... 502 TTTGAAACCC TAACATTTAC AAAGCAAAGA GTAGTGAAGT GACATTTTGG TGATATAATA 6256 .......... .......... .......... .......... .......... .......... 502 ATGCTATTTG GAAATGGTAG CTTGTCCATA TATGGCTTCC TCAACCGAAA CCTTGATAAA 6196 .......... .......... .......... .......... .......... .......... 502 ATTTAATTTT GTTGTAAGTC TAACATACGC ATTCATATTA AAAAATTCAT CAAAATTTAT 6136 .......... .......... .......... .......... .......... .......... 502 ATTAAATCAA TACGAATCAA ATAATATAAA TATTGAACGA ACATCCATCA AAAAAAGTGA 6076 .......... .......... .......... .......... .......... .......... 502 TATGTGAATA ATTGATTGCG TTCATAATTA TAATTGTTGA GTGCACTTTT TGACACGTGG 6016 .......... .......... .......... .......... .......... .......... 502 TGATGGTAGT TTTTTTTGTC TTGTGAATGC ATTTTATATT AGTTGTTATT TCACGGTTTA 5956 .......... .......... .......... .......... .......... .......... 502 TAAATAGTTA TTTTAAGATA TAAACATAAT ATTCTCTCCA TTCGATATTG TTTGTTATGT 5896 .......... .......... .......... .......... .......... .......... 502 TTTTCTATTT TTAAAGTTAA ATTATAAAAA TTTTGACTAA TATATTAAGA TGTATTCTTT 5836 .......... .......... .......... .......... .......... .......... 502 TATCATATTA ATATGTAAAA AATTATAATT TATAGTATTT TTTATATAGT TTTAAAAAAT 5776 .......... .......... .......... .......... .......... .......... 502 CTAATTTTAA AAAAAATATC AAATTAATAT ATTAATTCAT TTTTAAAAAT TAATCAAATT 5716 .......... .......... .......... .......... .......... .......... 502 AACTTTTAAT AACGCAACAT GATAAATAAT TATGAACGAA GGGAGTATAT TAATAAAAAG 5656 .......... .......... .......... .......... .......... .......... 502 ACTTGGCTCG TAATAAAGAT ACATAGTTAA AACATAAAAC TGAATTAATT TAACATATTA 5596 .......... .......... .......... .......... .......... .......... 502 AGTTTTTTTC ATCCAAGTAT GAGTGCTTAT ATATATATAA TAATAATATA TACTTATTGT 5536 .......... .......... .......... .......... .......... .......... 502 ACGATTTATA TTATGAAAAA TTCTATAAAA TAAAAACTCA AAATATTTTA TCACATATAA 5476 .......... .......... .......... .......... .......... .......... 502 TTAGTTATAT AACTTATTTG ATATGAATCA TGTTCCATGC TGAGACTAAA AAATTCAAAA 5416 .......... .......... .......... .......... .......... .......... 502 TTGTATTTAA ACTCATTTTC CACTTCATAA CAAACTAATA GTCTAATATG GTGCTATTAT 5356 .......... .......... .......... .......... .......... .......... 502 ATCCAAATTG AACATTATGT AATATATCCC AAAGAAATGA AACCAGGAAA AAGGAAAAAA 5296 .......... .......... .......... .......... .......... .......... 502 TAATTATATA TTAAAAATAA TAATCTGAAT CAAAATTGGA AAAATAACTT AAATACATAA 5236 .......... .......... .......... .......... .......... .......... 502 CTATAAATTT AGTATTCTCT AATTTTCCCT TCTTTTTTTT AAATATTACA TAATTCCCTT 5176 .......... .......... .......... .......... .......... .......... 502 TTTTTTTAAT TTTAGTAGAA GTTTAGAGAT ACATAACCTT CTCTCTCCTA TAACACACAC 5116 | || | | ||| || | .......... .....TTTAA GATGAGAAAT -C........ .......... .......... 518 TTCCCCAATA TCATGCCTAT TTTTTCTCCA CTAAAACACT CAATCTTTTG AATCACTTTT 5056 .......... .......... .......... .......... .......... .......... 518 TGAATTTTGA ATTATTAATT TTAATTAAAA ACGTTTCACA ACATTTAATA TGAAATTTTG 4996 .......... .......... .......... .......... .......... .......... 518 AATTTCAAAA TCCAAAAAAT ATGAAATTTC TGAAAATTGG ACCATTGTTC TCTGGTTCTT 4936 .......... .......... .......... .......... .......... .......... 518 CTTCTTACTC CATCATCCGT CTGTAGTTCT TCTTCTTCTT AATCCATCAT CTGTTCTTAT 4876 .......... .......... .......... .......... .......... .......... 518 TTTCTTCTTG TTCATTGCTA TATTACATCA GTCGTCTCTA GGTCTTCTTT TTCTTCTTAC 4816 .......... .......... .......... .......... .......... .......... 518 TCCATCATCC GTTCTTTTTT TTTTGTTCAT TGTTCTATTA CATTATATTA ATGTATCCTT 4756 .......... .......... .......... .......... .......... .......... 518 TTACTAATAG AAGGATTTAT GATTCGTACG GTGAAAATTG GAAAGAAAAT AGAAAAAAGT 4696 .......... .......... .......... .......... .......... .......... 518 CTTTGCATGA TCCTATGAAT AATCGGAAGG ATTCAAACAA AGATTTTGGC GAATCATTTA 4636 .......... .......... .......... .......... .......... .......... 518 AATCAAAGGT TGACAAAATA CACCAAAAAA GGAGAAAAGA AGCAGCAACC ATTGTTGTTG 4576 .......... .......... .......... .......... .......... .......... 518 AAATTAGTAA AAATTTTAGT AAAGGAATCC CATATGTATC ATGAATTTTT AAAAATTGTT 4516 .......... .......... .......... .......... .......... .......... 518 ATCATGTATC AGACAATAAG TTTAATACAT AAGTACTCAG TGTGTTATAG CGTGTTAGTC 4456 .......... .......... .......... .......... .......... .......... 518 GATGCATTGA TACATGAATT AGATGTGTAT CATATGATAT CCTATGTATC AAGAGTTTTT 4396 .......... .......... .......... .......... .......... .......... 518 GAAAATTGTT ATCATGTATC AGTCAATAAG TTTAATAACT GCGTCATCAA GTGTGCTTGC 4336 .......... .......... .......... .......... .......... .......... 518 TGACACATAT CGACTCAGTG TGTTATAGTG TTTAGACGAT GCATTGATAC ATGAATTTGA 4276 .......... .......... .......... .......... .......... .......... 518 TGTGCATCAT ATGATTTTCT ATGTATCACG AGTTTTTAAA AATTGTTATC ATGTATTAGC 4216 .......... .......... .......... .......... .......... .......... 518 AATAAGTTTA ATAACTGGAT GTTCATAAAA ATATCTTCAA ACTAGATGAT ATAATCTTGA 4156 .......... .......... .......... .......... .......... .......... 518 ATTTTCAAAA TTTGAAATTG TTATCAAATT ACGTGCTGAA TTAATGCTTA TTAATGAACT 4096 .......... .......... .......... .......... .......... .......... 518 GTTACCATAA TTTAAGCTGA TTTAGATAAC AAATTTAAAT GTTCCATTTT TTCCCCTTTT 4036 .......... .......... .......... .......... .......... .......... 518 AATCTTAACA GTTTTAAGTT ATTGTGTATC ATTTACCATG TATCACACCA TACTAATGTA 3976 .......... .......... .......... .......... .......... .......... 518 TCACGCCACA ACAATTTTAA GGGATTATTA GTAAATACTA AATTTGTCGA GACAGAATGT 3916 .......... .......... .......... .......... .......... .......... 518 AATTATTGTA TTACACTATG GGATTCCTTA AATTTATACA TAAAAATTTA GCTAATCAAT 3856 .......... .......... .......... .......... .......... .......... 518 TAAAAATTAA AATGACATAA AAAAAAAGAA ATACGAAGTA AACATAAGAA TAAGGCAAAT 3796 .......... .......... .......... .......... .......... .......... 518 ATGACAAAAT AAGAATATAA TAATTGTCCC ATGTAAATTC AGGAATTTAT AAACAGTTGA 3736 .......... .......... .......... .......... .......... .......... 518 AAAAATAACC ATTTAAAATG ATGAAGATGA AATTATAATA CAAAATATCA TTCTACTTAC 3676 .......... .......... .......... .......... .......... .......... 518 CTATTAAATA TTAATATTTC AAAACAATAC AAATCAATAT ATATATATAT ATATATAAAG 3616 .......... .......... .......... .......... .......... .......... 518 GAGGATCATA GAGGAGCTGA TGTGCACCTC TCTATGGCCT CTATTTCAAT TTCTTTTTTT 3556 .......... .......... .......... .......... .......... .......... 518 CCTCTTTTTT TTTCTTCATT TTTTCATTAA ATAATTTGTT TATTAATTAA AAAATTCATT 3496 .......... .......... .......... .......... .......... .......... 518 CATATTTATT ATTCTAATTA TACCTAATAA GTTACAACAA AACCTCCATC TATTTACATT 3436 .......... .......... .......... .......... .......... .......... 518 CTCTACTTAA ATATTATGTC TCGTCAACTT ATTTTTAATT ATTCTAATGG TTTATACAAA 3376 .......... .......... .......... .......... .......... .......... 518 CTATAAATAA CAACTATCTA TGTTCAATGA TCATTCTCAT TTTCTCATTC TTTCTTTTTA 3316 .......... .......... .......... .......... .......... .......... 518 TTAATATAGT TTTTTCCTCT TTTACATTTT TTTTCTTCAT CTTTTTCATC AATCATGTAC 3256 .......... .......... .......... .......... .......... .......... 518 TTAATAAGTT CACCATATGA TCTTCATATT GATAAAGATC ATAAATATAT TCTTCAAGAT 3196 .......... .......... .......... .......... .......... .......... 518 TCATCAAATT GATGTTTGCA TTAGTTTGGT ACAAGTTTAT GAAAATAAAG AAGGAATTAT 3136 || ||| || .......... .......... .......... .......... .......... AA-TAATAAT 527 TATTATTTCA AGATTTCATC AAGAGGATGG TCATATTA 3098 || | | || ||||| | || | ||| | ||||| CCTTGTAAAA AGTTTTCAGC AA-ATATTGG ACTTATTA 564 hqPGS_C08SLe0082C24.1-_SGN-U324885+ (9225 8983) ******************************************************************************** EST sequence 22 +strand 923 n (File: SGN-U340816+) 1 ATTTGAAAAC GCTGGAGCTC CACCGNNNNA TGGAAAAACG CTGGAGCTCC ACCGCGGTGG 61 CGGCCGCTCT AGAACTAGTG GATCCCCCGG GCTGCAGGAA TTCGGCACGA GGCCGGGTGG 121 AAATAAATGG GTATGAAGAA TATAGTAACC GTGAATACAG ATCAGCTGGA TGTACCGAGG 181 AGTATTCAGT TATTGAACGA GATCTGGAAC AGGAAGGAGA ATCAGAGTCT CTTAGGCTGG 241 AAGGTGATAT AGGTGGTGGA TTATTTATGG AACGATATAT ATCTTTGCCA AAAGACAACT 301 CCAAGGTTTT CCGCATTGAT TCTGGAATTG TAGCTCGTGG AGTTGGTGCT GGTTCTGGAG 361 GATTTTCTAG GCTTGTGTGC TTGCGTGTGC ATCCAATGTT CACGTTGTTG CACCCAACTG 421 AATCATACGT GTCCTTTACT TCCCTCAATG GGTCCAAGCA TGAACTTTGG CCAGAATCTG 481 GAGAACAAGT GTTTGAAGGA GATCTTCGCC CAAAGGGTGA ATGGATGCTT GTTGATAGAT 541 GTCTTGGTCT GGGATTAGGC AATCGATTCA ACATCGATCA AGTACACAAA TGTATGGTGC 601 ATTGGGGTAC CGGAACAGTG AATCTAGAGC TCTGGTCTGA AGAAGGCCTG TCTCAAAGGA 661 CTCACCTCTT AAAATATCTC ACGAGTACGA AGTGCAAAAG ATAGCCTAAA ACTTTCACCC 721 AGCATTGGCC CACTTGTTCA AAGAGCATTT TTTTGGGATT GAAGAAAAAT TATCCATTTT 781 CCACAAGCTT ATGGCCTTAT GGAGAATGGG GGTTAAATCA AATAAGAAAT GACCTCAAAA 841 ATTCATACCT TACCTTTTCC TCCAACTTTT ATTATTGCAC GTCCCGTTCA GGGTTTTAAA 901 CCTTAATGGA TGCCACTTAA ACC Predicted gene structure (within gDNA segment 17298 to 25023): Exon 1 19009 19092 ( 84 n); cDNA 113 196 ( 84 n); score: 1.000 Intron 1 19093 20278 (1186 n); Pd: 0.960 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 20279 20452 ( 174 n); cDNA 197 370 ( 174 n); score: 1.000 Intron 2 20453 20840 ( 388 n); Pd: 0.998 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 20841 20986 ( 146 n); cDNA 371 516 ( 146 n); score: 1.000 Intron 3 20987 22115 (1129 n); Pd: 0.998 (s: 1.00), Pa: 0.885 (s: 0.98) Exon 4 22116 22413 ( 298 n); cDNA 517 820 ( 304 n); score: 0.901 Intron 4 22414 24376 (1963 n); Pd: 0.000 (s: 0.70), Pa: 0.864 (s: 0) Exon 5 24377 24400 ( 24 n); cDNA 821 844 ( 24 n); score: 0.583 MATCH C08SLe0082C24.1+ SGN-U340816+ 0.958 726 0.787 C PGS_C08SLe0082C24.1+_SGN-U340816+ (19009 19092,20279 20452,20841 20986,22116 22413,24377 24400) Alignment (genomic DNA sequence = upper lines): CCGGGTGGAA ATAAATGGGT ATGAAGAATA TAGTAACCGT GAATACAGAT CAGCTGGATG 19068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGGTGGAA ATAAATGGGT ATGAAGAATA TAGTAACCGT GAATACAGAT CAGCTGGATG 172 TACCGAGGAG TATTCAGTTA TTGAGTAAGA AAATAATAAG TTCCTCATGT AGCTTGTTTC 19128 |||||||||| |||||||||| |||| TACCGAGGAG TATTCAGTTA TTGA...... .......... .......... .......... 196 AAATAGTTTC TTGTTGGCTA CCGAGGAACG CAATTAGTGC TAATTAAGTT CTAGCAATGA 19188 .......... .......... .......... .......... .......... .......... 196 CAACGTTTAT TCTTCATTGA TCAAAAATGG AAAACTGAAA ATGATGCATG TGTAAATTCA 19248 .......... .......... .......... .......... .......... .......... 196 AGTATCCAAT TACCGTTGAA TAAAATGGTT CATCTTTTGA GATTCAATTA TAAGGGAGAC 19308 .......... .......... .......... .......... .......... .......... 196 TTCAATATTT CACCTGATAG AAAGTTGTGC ATGTCCTGTG GTCCAGAAGA AAGAAAGAAA 19368 .......... .......... .......... .......... .......... .......... 196 GAAAGAAAGT GTAGCTGAAT TTCGAAATAA ATGGCTCCAA AATGTGAAAG CAATGAAAAG 19428 .......... .......... .......... .......... .......... .......... 196 CATGAGTGAA CATATTAAAA AAGGAGCTGT TGTTGGGATT GAGCTGAAAT CTGGCTAAGA 19488 .......... .......... .......... .......... .......... .......... 196 TGGAGTTTTT TTTTTTTACT CCTGATTGAA ATGTCTTTGG ATATATTTAA AAATGAATTG 19548 .......... .......... .......... .......... .......... .......... 196 CTGATTTGGA AGCAGGGAAA AGAGACAGAA TTTTTAAGAT TGTAGGATTT AATCATTTAA 19608 .......... .......... .......... .......... .......... .......... 196 TCTGTCAAAC AATTTATTTG ATTGTTAAAC TTCTCTAGCG GGTCCCTTTA TGGTAGTCAG 19668 .......... .......... .......... .......... .......... .......... 196 TTGTCGCAGA GTGTCTTTTC TGAGGGAATG GAATCATCTG GATTGTTCTT GACTCAAATC 19728 .......... .......... .......... .......... .......... .......... 196 CAGGAGATAG TACTATAATT TTTGAAATTA TCTTCTTGTG ATTTTCCGTA GTCACATTTG 19788 .......... .......... .......... .......... .......... .......... 196 TTTAGAGAAT TGGTGCACTG TTTTAAATAT CAGGAAGGTT TCTTTCTAGA GAATTGGTGC 19848 .......... .......... .......... .......... .......... .......... 196 ACTGTTTTAA ATATCAGGAA GGGTCAAGTG TTTGGCTTCT GATATGTTAA TCACACTTAG 19908 .......... .......... .......... .......... .......... .......... 196 AGTGAAGATG GATTTGGGTA ATGTTGGGTG ATAGTTTCTT GTTATTGATA TGAAAAACAG 19968 .......... .......... .......... .......... .......... .......... 196 ACTTGGAAAA TTAATGTTGT TATTCACGTT GGCAAAGGGG CATATATTTC TCAAAATTGT 20028 .......... .......... .......... .......... .......... .......... 196 AGCCAATGCA TGATAGAACT TCTTCAGATA TGGCATCGTC AAAAAGTTTT GGTGTAATTA 20088 .......... .......... .......... .......... .......... .......... 196 TGCTATGCAC TTCATTTTCG CCCCATCTCA TAAAGCAGTT CAATTTTGTC TTATATGCTA 20148 .......... .......... .......... .......... .......... .......... 196 ATTCTTCATT TATGGATTTT TTCTTCTGTA TTTTTGACTT TAAAAGTTAG AATTTTGATT 20208 .......... .......... .......... .......... .......... .......... 196 CATTATTGTA TATTTTATTC ACAAGGGCAT TTGTTCTTCT CTGTTCACTT TAAATCTTCC 20268 .......... .......... .......... .......... .......... .......... 196 TGTTCTGCAG ACGAGATCTG GAACAGGAAG GAGAATCAGA GTCTCTTAGG CTGGAAGGTG 20328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ACGAGATCTG GAACAGGAAG GAGAATCAGA GTCTCTTAGG CTGGAAGGTG 246 ATATAGGTGG TGGATTATTT ATGGAACGAT ATATATCTTT GCCAAAAGAC AACTCCAAGG 20388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAGGTGG TGGATTATTT ATGGAACGAT ATATATCTTT GCCAAAAGAC AACTCCAAGG 306 TTTTCCGCAT TGATTCTGGA ATTGTAGCTC GTGGAGTTGG TGCTGGTTCT GGAGGATTTT 20448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCGCAT TGATTCTGGA ATTGTAGCTC GTGGAGTTGG TGCTGGTTCT GGAGGATTTT 366 CTAGGTCTGT TCTATCCTAC ATCTTATTAT TGAAAACTAC TTGTAGGATC TCTAATAACC 20508 |||| CTAG...... .......... .......... .......... .......... .......... 370 ACCTCTTGAT ATTTCGATTT TCTTACTGTC TACGCTGCAT TGATTTTCAA AAATGTTGCA 20568 .......... .......... .......... .......... .......... .......... 370 GCGTGTGAGA TTATCCAAAA GTAGTGCATA TATGGATGAT CCAACGTAGG TGCGGCAACA 20628 .......... .......... .......... .......... .......... .......... 370 TTTTTGGAGG GTCTGAGCAA CATAGCTTTT CTTGTAGATT TTAACAAAAA TAATTATTTT 20688 .......... .......... .......... .......... .......... .......... 370 TCGGTCAATA TTCTTATTTC TGGATTGTCA TGTTGATAAT AGCTGGTTGA AAGATACTCT 20748 .......... .......... .......... .......... .......... .......... 370 CTCTTCCCTT TATATGGTAT AGAGCCTCAA TTTAATTCAT TCCGTCTTAT TTCTGATGGC 20808 .......... .......... .......... .......... .......... .......... 370 TTTTTTTGGC ACACTTTTTA TTGTGTTGGT AGGCTTGTGT GCTTGCGTGT GCATCCAATG 20868 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GCTTGTGT GCTTGCGTGT GCATCCAATG 398 TTCACGTTGT TGCACCCAAC TGAATCATAC GTGTCCTTTA CTTCCCTCAA TGGGTCCAAG 20928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACGTTGT TGCACCCAAC TGAATCATAC GTGTCCTTTA CTTCCCTCAA TGGGTCCAAG 458 CATGAACTTT GGCCAGAATC TGGAGAACAA GTGTTTGAAG GAGATCTTCG CCCAAAGGGT 20988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CATGAACTTT GGCCAGAATC TGGAGAACAA GTGTTTGAAG GAGATCTTCG CCCAAAGG.. 516 ACATCCTACT CTTTACTTTT GCTCACCTGA CTTTTTTTAA TTTAATTGCG CACACATATT 21048 .......... .......... .......... .......... .......... .......... 516 TGTGGTCATA TTACTCTGAA GAAACCTGCT TTGCGCAAAC CATTTCAATT TGTAAAAGCA 21108 .......... .......... .......... .......... .......... .......... 516 TAGCAGGAAG TAAAAGTAGA TTACAGTGGA TGGCCTGAAC TTGGTTGTGG TGTAGGTATG 21168 .......... .......... .......... .......... .......... .......... 516 TCAATATATG TAAATTTCTG AGAGACTCGA CCAGATTTGA ATTAGTATGG TACCTTAGTA 21228 .......... .......... .......... .......... .......... .......... 516 AGACCAGTGA AGTCACCAGA GCTTGCTTCT CTAGAGGAAT ATAGTAGTAA GACGGGACTG 21288 .......... .......... .......... .......... .......... .......... 516 GAAGAACGGA AAAGACAAAT TGGGAGTTAT TTATAAGAAG ATTCCAAATG AGGGGAAGTG 21348 .......... .......... .......... .......... .......... .......... 516 CACAAATTGC ACAAGTTACC TGTCAATGTG CAAAACTTCC AGTAAGCAAC TTATTATCAT 21408 .......... .......... .......... .......... .......... .......... 516 TCCCTGTTCC AGTAATTCAG AAATATTCTC CCCATGTGGT GTTTCTTCAT GCTTATTCCC 21468 .......... .......... .......... .......... .......... .......... 516 TCTTCATCAG TTTTATCTAT TTAAACTTTT TGTAAGAGCT AGATGAATAT ATCGAAAGGG 21528 .......... .......... .......... .......... .......... .......... 516 GCATGGAGAT GCTTTACCTG GTCTATGCAG ACACCTTAAG AAACGGGGAT CAAAAGCTTG 21588 .......... .......... .......... .......... .......... .......... 516 ACAGGATGTC ATTTATTATG TAGGGAAAGA TAAAGCTACA AGTAAAATGT GTAAAGCATC 21648 .......... .......... .......... .......... .......... .......... 516 TCCTGCAAAT ATTTGAAGGA CACATCCTTT TCCGGAATGT ATGCTGAATA CTTGAAACAA 21708 .......... .......... .......... .......... .......... .......... 516 ATTTGAGTGA AGGTGTTAAG CTGCAATGTT CGATATCAGT TGCTTTTGTT TGCATTATCA 21768 .......... .......... .......... .......... .......... .......... 516 CCTATTTAGC CTATTACTAT TTTTGCCGAT GTGGAATTTT TTTGTAACGC TGGTGTTCAC 21828 .......... .......... .......... .......... .......... .......... 516 ATCAGCTTGC ACACACGTTG ACTATTCCAT TAAGAACCTG CTATCTACCA CTAATACCAA 21888 .......... .......... .......... .......... .......... .......... 516 AATAAAAAAG GGTTATTCTA ATCACTTAGA CTTAGGCAGA TGGAAATAAA TCACCTAATG 21948 .......... .......... .......... .......... .......... .......... 516 TTTTTCATCT CTACTGTGGT TTGATCAAAC AGTCTTCCTA ATCCTTGGTT TGGGTAAAAT 22008 .......... .......... .......... .......... .......... .......... 516 AACTCTAGCT AACAAAATAT TTCTCGATGG TTGATAATTT GTTCAGTGTT CATTAGTGAA 22068 .......... .......... .......... .......... .......... .......... 516 TCGGGGTTGC AAAATGTTTG AACCAGTGTT AATCGATTCC TTTTCAGGTG AATGGATGCT 22128 ||| |||||||||| .......... .......... .......... .......... .......GTG AATGGATGCT 529 TGTTGATAGA TGTCTTGGTC TGGGATTAGT CAATCGATTC AACATCGATC AAGTACACAA 22188 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGTTGATAGA TGTCTTGGTC TGGGATTAGG CAATCGATTC AACATCGATC AAGTACACAA 589 ATGTATGGTG CATTGGGGTA CCGGAACAGT GAATCTAGAG CTCTGGTCTG AAGAAAGGCC 22248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATGTATGGTG CATTGGGGTA CCGGAACAGT GAATCTAGAG CTCTGGTCTG AAG-AAGGCC 648 TGTCTCAAAG GACTCACCTC TTAAAATATC TCACGAGTAC GAAGTGCAAA AGATAGCCTA 22308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTCAAAG GACTCACCTC TTAAAATATC TCACGAGTAC GAAGTGCAAA AGATAGCCTA 708 AAACTCTCAC CCAGCATT-G ACCACTTGTT CAATGAGCA- TTTTCTGGGA TTGAAG-AAC 22365 ||||| |||| |||||||| | ||||||||| ||| ||||| |||| ||||| |||||| || AAACTTTCAC CCAGCATTGG CCCACTTGTT CAAAGAGCAT TTTTTTGGGA TTGAAGAAAA 768 AGTATACA-T TTCCACAAGC -TATGGCCTT ATGTAG-AT- GGTGTTAAGT CAATAAGAAT 22421 | ||| || | |||||||||| ||||||||| ||| || || || ||||| | || ATTATCCATT TTCCACAAGC TTATGGCCTT ATGGAGAATG GGGGTTAAAT CA........ 820 GACTCAGAAG TCATACTCAC CTTCCTCCAG CTTATCATTG ACAGTCCGTT CAGGGTTTCA 22481 .......... .......... .......... .......... .......... .......... 820 AACTCAATGA TGCAACTAAA CACGAGTTTT CCGAGAAAAC CTTGGTGTGG TAGTCAGGGA 22541 .......... .......... .......... .......... .......... .......... 820 AGAGCTTGTA GGGATAAGAG ACAGAAGATT GTTAAACAGG ACACTGTATA TGATCCTGGA 22601 .......... .......... .......... .......... .......... .......... 820 AATGTCATTA GTTTTGGACT TTTGGTATGT AGACCAAACA ATAAAATCAA TGCAAGCCTA 22661 .......... .......... .......... .......... .......... .......... 820 TGCTATGATT TGACAATTCA AATAGCCTAT GTAGAAAGGG GGACCTTGGG AAAAAGTAGT 22721 .......... .......... .......... .......... .......... .......... 820 AACTCTAGGG GTTTGTTGGT ATAGGAAGGG AAATGTTTTT CATGAAAATA TTTTCGTAGA 22781 .......... .......... .......... .......... .......... .......... 820 AAATAAGTTT TGGTCTTATT TCATTATAGA AGGGCCGGGG TCCGATCTGC GCATATATTA 22841 .......... .......... .......... .......... .......... .......... 820 ACATGGCTGC TCGTAACCCA ACAAATAAAG TACATTATAT AGTCCATTAA CCTATATGAA 22901 .......... .......... .......... .......... .......... .......... 820 AGTAGCAAAT TATACCCCAC AGATAAAGTT TGGTGATGAA TAACCAAAAA AGTTATGAAC 22961 .......... .......... .......... .......... .......... .......... 820 AATTAATTAA ATCCTATAAA CCCCCCACCC TTTGCATATA GCTTCATTAA TAACCACCCT 23021 .......... .......... .......... .......... .......... .......... 820 ACTATCAACC ACATTATTTT AAACCAATTT CTTGAATACA CTAAACTCCA TTTATCTCAT 23081 .......... .......... .......... .......... .......... .......... 820 CTCAAAAATT AGAAAGAAAA AAAAAAGATG AAACTTATGA TACCATTTTT CTTGTAGAAA 23141 .......... .......... .......... .......... .......... .......... 820 ATATGGTTAA AGGGCCTTCT CCATTTGTTC CTCTTCTTCT TGTACTCAGC TTAGGATTAC 23201 .......... .......... .......... .......... .......... .......... 820 TTCTCCATGG CCAAAACATA ACTGAAAGTG TTTCATTAGC CCTTGATATT GAAGACATAA 23261 .......... .......... .......... .......... .......... .......... 820 ACTTCACTTT TTCTATTTTC ATCCCTTTTT TAGCCATTGT GTTTGTATAT TATACTACCC 23321 .......... .......... .......... .......... .......... .......... 820 AATCAATCTT GGCATCTCTT ATTATTATAC TACTAACTTA CACTGTTTTA AAAATTCTTC 23381 .......... .......... .......... .......... .......... .......... 820 TTGGTCCACT TTTACTAGTA GTGTTACTGT GTTTGATAAT TATTTATGCA CCTGCTTTAC 23441 .......... .......... .......... .......... .......... .......... 820 AAGGTTACAA CAATTATTAT TATAGGGTGA GAGATGGTGA AGATGAGTTT AGAAGATGGG 23501 .......... .......... .......... .......... .......... .......... 820 GATGGTTGTA TATTATCTTG ATCTTCTTGG TTTTCCAAGT GATGTTTTCT TCAACACAAG 23561 .......... .......... .......... .......... .......... .......... 820 GTAATGAATG GGGACTTGCT ATGCTTGGTT TGGTTATTTA CTTCTTTTTT AACTTCTTTC 23621 .......... .......... .......... .......... .......... .......... 820 GTGAGTAAGT CTCAATCGGT AGACAGAGTT ATATGGTACG TACTTATGCT GGTGGATGTA 23681 .......... .......... .......... .......... .......... .......... 820 GTGAGTACTC AATGGAATCA TTGAACCGCG AACAAGCTGA CCATGACACC ATCATCGCAA 23741 .......... .......... .......... .......... .......... .......... 820 AGAAAGAAAA CTTTTCTAGT CAACGTAGTA GTACTAGATA GAGTTTGGTA CAGTGTTTTC 23801 .......... .......... .......... .......... .......... .......... 820 TGCATTTACA CAAAATAACA AAAAAAAAAA AAAAGGGGTG GTAGGTGGGG TTTGCCAAAA 23861 .......... .......... .......... .......... .......... .......... 820 GAGTTATGTA TTCTTAGATA TAAATACAAA TATTGCTCTA AGGCCTTCCC ATACGACTTC 23921 .......... .......... .......... .......... .......... .......... 820 ACCTCAGTCG AAGACCCCAC CGTGGTATAC GCCAATAAGA CCAGCAAAGG CCTTTGTGGC 23981 .......... .......... .......... .......... .......... .......... 820 ATATACTATG TTGTACTCGT TTCTGCGAGA CAGTCGTTAC TCCATTTATG CAAGTCACTA 24041 .......... .......... .......... .......... .......... .......... 820 TTGTGTATTG TGTTTATGTT GGTGATTTCT TTGAAGCCGT GTCGTCCCAT CATTGGATTT 24101 .......... .......... .......... .......... .......... .......... 820 TTTTTTCTGT TTTTATTTGT TGTTGTTGTT GTGTGTGTTG AATCTGTTCA GTCTTGACCA 24161 .......... .......... .......... .......... .......... .......... 820 TAAAGCAAAG CAGCTGTGAA CTTGCATCAT CTTTGCTTCA TGGAAAAATT GGTGTATGAA 24221 .......... .......... .......... .......... .......... .......... 820 TATCAAATAG TTACTGTTCA TAATATTTAA TATAATTTTT GTTTTTTTTA AAAAAACAAG 24281 .......... .......... .......... .......... .......... .......... 820 TTATACCAAA TATTGGCTGT TCTCATAAAA TGATCTTCAA AGCATTTTGT GTTTCTCTTT 24341 .......... .......... .......... .......... .......... .......... 820 CCATATAATC CAGCAAATAC ATATTGTTAT CTCAGATGAC CCATTTACTA CCAAAATTC 24400 | | | | || | ||||||| .......... .......... .......... .....AATAA GAAATGACCT CAAAAATTC 844 hqPGS_C08SLe0082C24.1+_SGN-U340816+ (19009 19092,20279 20452,20841 20986,22116 22413) ******************************************************************************** EST sequence 33 +strand 1448 n (File: SGN-U315367+) 1 AAATATATAT ATATAATATT ATTATTTGCC TTCTTCCTCA AGTTTCTTTC CAAACTTCCG 61 GCGAACATTT TCTTTTATTC CAGATTTTGA TCGGAAGTTA TCAAGCATGA TGACCCGTGG 121 AGCAACAAGG ATGACACGAG TTGTCATGGG TCATATGGGT ACACGTTACT TTTCAACTAC 181 AGTTCTGCGA AATAATCCCG GGACCGGAGT TGTTGGTGGA GTCGCTGCCG GACTTTTGCA 241 TGGTTTTCCG GCGAATCCAT CGGAGAAAGT GGCAGTAACG TGGGTTAGGC ATTTTTCGGC 301 GATGGGTTCA CGGAGCGCTA GTACTGCGGC TTTGAATGAT AAGCAACAAG AGAAGGAAAG 361 TAGTGACAAA AAAGTGGAGA ACACCGCCAC CGCCGCTGTA AACGGTGGTG TTGGTAAATC 421 TGTGGTGAGT TATTGGGGGG TTCCTCCTTC AAAGGCTACT AAACCAGATG GTACTGAATG 481 GAAATGGAAT TGTTTTAGGC CATGGGAGAC TTATGAAGCT GATATGTCGA TAGATTTGAC 541 GAAACACCAT GCGCCTGTAA CGTTTTTGGA TAAATTTGCT TATTGGACTG TTAAGATCCT 601 TCGTTTCCCC ACTGATGTAT TTTTTCAGAG GAGATATGGT TGCAGAGCAA TGATGTTAGA 661 GACAGTGGCG GCGGTGCCTG GAATGGTGGG AGGTATGTTG TTGCATTGTA AGTCATTGAG 721 GCGATTCGAA CAGAGTGGTG GATGGATCAA AGCTCTGTTA GAAGAAGCTG AAAACGAGAG 781 GATGCATTTG ATGACTTTCA TGGAAGTTGC AAAGCCAAAT GTATACGAAC GTGCTCTGGT 841 TTTCGCAGTG CAAGGCGTCT TCTTCAACGC TTACTTTGCT GCATACCTTA TTTCCCCAAA 901 ATTGGCTCAT CGTATCGTCG GATATTTGGA AGAAGAGGCT GTACATTCGT ACACCGAGTT 961 CCTCAAGGAA TTGGACAATG GTAACATTGA GAACGTTCCT GCTCCCGCTA TTGCTATTGA 1021 TTACTGGCGA CTGCCTAAGG ATGCCACTCT CCGCGATGTT GTCTTGGTTG TTCGGGCTGA 1081 TGAGGCTCAT CATCGCGATG TCAACCACTA TGCATCTGAC ATTCATTACC AAGGACAACA 1141 GCTGAAGGAC TCACCAGCAC CACTTGGGTA TCACTAAGCG ACTAATAATA AATACAAAGA 1201 TATGACTTAT CAAGCTAAAA GTCCGTCACT ATTTTGTTCC TTTTTTTGAA CTGGTAATAG 1261 AGAATATGTA GTAGGTATTA CTAATCTCGA ATGTTGATGT ACATATTTTT GTGTGGATTT 1321 GGTTCGTTCT TTGCTGCCTC TTCATCGATA AGAGGTAGAG TAGGATGACC TCTGTATCCT 1381 ATATATTCTT GATGAAATTA TATCATCTTT TTGTCTAAAA AAAAAAAAAA AAAACTCGAG 1441 GGGGGCCC Predicted gene structure (within gDNA segment 28236 to 24861): Exon 1 27528 27024 ( 505 n); cDNA 1 499 ( 499 n); score: 0.978 Intron 1 27023 26937 ( 87 n); Pd: 0.991 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 26936 26808 ( 129 n); cDNA 500 628 ( 129 n); score: 1.000 Intron 2 26807 26657 ( 151 n); Pd: 0.996 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 26656 26168 ( 489 n); cDNA 629 1117 ( 489 n); score: 1.000 Intron 3 26167 26081 ( 87 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 26080 25781 ( 300 n); cDNA 1118 1417 ( 300 n); score: 1.000 PPA cDNA 1418 1435 MATCH C08SLe0082C24.1- SGN-U315367+ 0.992 1423 0.983 C PGS_C08SLe0082C24.1-_SGN-U315367+ (27528 27024,26936 26808,26656 26168,26080 25781) Alignment (genomic DNA sequence = upper lines): AAATATATAT ATATAATATT ATTATTTGCC TTCTTCCTCA AGTTTCTTTC CAAACTTCCG 27469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATATAT ATATAATATT ATTATTTGCC TTCTTCCTCA AGTTTCTTTC CAAACTTCCG 60 GCGAACATTT TTTTTGATTC CAGATTTTGA TCGGAAGTTA TCAAACATGA TGACCCGTGG 27409 |||||||||| | ||| |||| |||||||||| |||||||||| |||| ||||| |||||||||| GCGAACATTT TCTTTTATTC CAGATTTTGA TCGGAAGTTA TCAAGCATGA TGACCCGTGG 120 AGCAACAAGG ATGACACGAG TTGTCATGGG TCATATGGGT CCACGTTACT TTTCAACTAC 27349 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AGCAACAAGG ATGACACGAG TTGTCATGGG TCATATGGGT ACACGTTACT TTTCAACTAC 180 AGTTCTGCGA AATAATCCCG GGACCGGAGT TGTTGGTGGA GTCGCTGCCG GACTTTTGCA 27289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTGCGA AATAATCCCG GGACCGGAGT TGTTGGTGGA GTCGCTGCCG GACTTTTGCA 240 TGGTTTTCCG GCGAATCCAT CGGAGAAAGT GGCAGTAACG TGGGTTAGGC ATTTTTCGGC 27229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTTCCG GCGAATCCAT CGGAGAAAGT GGCAGTAACG TGGGTTAGGC ATTTTTCGGC 300 TATGGGTTCA CGGAGCGCTA GTACTGCGGC TTTGAATGAT AAGCAACAAG AGAAGGAAAG 27169 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGGTTCA CGGAGCGCTA GTACTGCGGC TTTGAATGAT AAGCAACAAG AGAAGGAAAG 360 TAGTGACAAA AAAGTGGAGA ACACCGCCAC CGCCACCGCC GCTGTAAACG GTGGTGTTGG 27109 |||||||||| ||||||||| | | ||| |||||||||| |||||||||| |||||||||| TAGTGACAAA AAAGTGGAG- A-A----CAC CGCCACCGCC GCTGTAAACG GTGGTGTTGG 414 TAAATCTGTG GTGAGTTATT GGGGGGTTCC TCCTTCAAAG GCTACTAAAC CAGATGGTAC 27049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATCTGTG GTGAGTTATT GGGGGGTTCC TCCTTCAAAG GCTACTAAAC CAGATGGTAC 474 TGAATGGAAA TGGAATTGTT TTAGGGTAAG TTTTAGTAAG GTTTTTCACA TATTTTTTTC 26989 |||||||||| |||||||||| ||||| TGAATGGAAA TGGAATTGTT TTAGG..... .......... .......... .......... 499 TGATATATAT ATTATGTAGG ATTAATGGTG GATTTTTTTT TTTTTGATTT AGCCATGGGA 26929 |||||||| .......... .......... .......... .......... .......... ..CCATGGGA 507 GACTTATGAA GCTGATATGT CGATAGATTT GACGAAACAC CATGCGCCTG TAACGTTTTT 26869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTATGAA GCTGATATGT CGATAGATTT GACGAAACAC CATGCGCCTG TAACGTTTTT 567 GGATAAATTT GCTTATTGGA CTGTTAAGAT CCTTCGTTTC CCCACTGATG TATTTTTTCA 26809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAAATTT GCTTATTGGA CTGTTAAGAT CCTTCGTTTC CCCACTGATG TATTTTTTCA 627 GGTACGTAAT ATAATAAAAT TCCCAGTATA TAGGAAACTG GAAAAAAAAT TCAATGCAAT 26749 | G......... .......... .......... .......... .......... .......... 628 TTCCCATAAT TTCGGAATTT TATAATAGTG AAATTGAATT GAAAATTTCG AATGAAATCA 26689 .......... .......... .......... .......... .......... .......... 628 TAGAGAGATG ATTTAATTTT GATGTGGTGC AGAGGAGATA TGGTTGCAGA GCAATGATGT 26629 |||||||| |||||||||| |||||||||| .......... .......... .......... ..AGGAGATA TGGTTGCAGA GCAATGATGT 656 TAGAGACAGT GGCGGCGGTG CCTGGAATGG TGGGAGGTAT GTTGTTGCAT TGTAAGTCAT 26569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGACAGT GGCGGCGGTG CCTGGAATGG TGGGAGGTAT GTTGTTGCAT TGTAAGTCAT 716 TGAGGCGATT CGAACAGAGT GGTGGATGGA TCAAAGCTCT GTTAGAAGAA GCTGAAAACG 26509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCGATT CGAACAGAGT GGTGGATGGA TCAAAGCTCT GTTAGAAGAA GCTGAAAACG 776 AGAGGATGCA TTTGATGACT TTCATGGAAG TTGCAAAGCC AAATGTATAC GAACGTGCTC 26449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGATGCA TTTGATGACT TTCATGGAAG TTGCAAAGCC AAATGTATAC GAACGTGCTC 836 TGGTTTTCGC AGTGCAAGGC GTCTTCTTCA ACGCTTACTT TGCTGCATAC CTTATTTCCC 26389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTTCGC AGTGCAAGGC GTCTTCTTCA ACGCTTACTT TGCTGCATAC CTTATTTCCC 896 CAAAATTGGC TCATCGTATC GTCGGATATT TGGAAGAAGA GGCTGTACAT TCGTACACCG 26329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATTGGC TCATCGTATC GTCGGATATT TGGAAGAAGA GGCTGTACAT TCGTACACCG 956 AGTTCCTCAA GGAATTGGAC AATGGTAACA TTGAGAACGT TCCTGCTCCC GCTATTGCTA 26269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCTCAA GGAATTGGAC AATGGTAACA TTGAGAACGT TCCTGCTCCC GCTATTGCTA 1016 TTGATTACTG GCGACTGCCT AAGGATGCCA CTCTCCGCGA TGTTGTCTTG GTTGTTCGGG 26209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTACTG GCGACTGCCT AAGGATGCCA CTCTCCGCGA TGTTGTCTTG GTTGTTCGGG 1076 CTGATGAGGC TCATCATCGC GATGTCAACC ACTATGCATC TGTAAGAAAC TAAAAAAGCT 26149 |||||||||| |||||||||| |||||||||| |||||||||| | CTGATGAGGC TCATCATCGC GATGTCAACC ACTATGCATC T......... .......... 1117 GATGATCTCA ATTTATTTTA GATTGATGCG TTAATGCATC TAACTAATGT ATTCAATTTT 26089 .......... .......... .......... .......... .......... .......... 1117 GATTGCAGGA CATTCATTAC CAAGGACAAC AGCTGAAGGA CTCACCAGCA CCACTTGGGT 26029 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CATTCATTAC CAAGGACAAC AGCTGAAGGA CTCACCAGCA CCACTTGGGT 1169 ATCACTAAGC GACTAATAAT AAATACAAAG ATATGACTTA TCAAGCTAAA AGTCCGTCAC 25969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTAAGC GACTAATAAT AAATACAAAG ATATGACTTA TCAAGCTAAA AGTCCGTCAC 1229 TATTTTGTTC CTTTTTTTGA ACTGGTAATA GAGAATATGT AGTAGGTATT ACTAATCTCG 25909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTGTTC CTTTTTTTGA ACTGGTAATA GAGAATATGT AGTAGGTATT ACTAATCTCG 1289 AATGTTGATG TACATATTTT TGTGTGGATT TGGTTCGTTC TTTGCTGCCT CTTCATCGAT 25849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTGATG TACATATTTT TGTGTGGATT TGGTTCGTTC TTTGCTGCCT CTTCATCGAT 1349 AAGAGGTAGA GTAGGATGAC CTCTGTATCC TATATATTCT TGATGAAATT ATATCATCTT 25789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGTAGA GTAGGATGAC CTCTGTATCC TATATATTCT TGATGAAATT ATATCATCTT 1409 TTTGTCTA 25781 |||||||| TTTGTCTA 1417 hqPGS_C08SLe0082C24.1-_SGN-U315367+ (27528 27024,26936 26808,26656 26168,26080 25781) ******************************************************************************** EST sequence 3 -strand 732 n (File: SGN-U332956-) 1 GAACTCCATG AAAGCTCCAA CTTTGGATAT TATTTTATAC CGGCAGGCAG CTGAAATGAG 61 ATCTTTTTTA TGGTTAGGAA TGAATACATG CTCAATTTTG AAATGTTAAG AGACATAATA 121 GAAGAGCAAA GAGACGAGCT ATGAATACTT GTGGGAATAC ACTAGATATG TTGACAATTA 181 CTACTTTCAG GAGGTTTATA GATCCAAATA TCGGATTGGG AGAAGAGATC AATGGTAGGA 241 ATCAGCAACT ACAACGGGTT GTTTGTGAAG GCGTTGTATG GTTTATGGGA ATTTGACACC 301 ACATGATCTG CAGTTGAAGC TAGAGTTATT CATGATCTTG AACTAATAGA TGCTCCTCTC 361 TATTGGGGAA ATTATACGTT AAACTAGGGA TATCCCATCA AGAAATGACA GATTTTTATT 421 TCTCCATTGA TTGGGATGAT GATTTTTACA ACATAAAACA ATCTTTGCTC CCATTTATTA 481 CACAAGATTT GAAGCTGAAA AGAAGAAATA GTGTCATTTA CAACAATGCT TGAATTCTTA 541 GAGATTATTA ATGATGTTGA ACTAATAAAT CCTCCTTTCT TTGGGGGAAA TTATATGTGG 601 AACTAGGGAA ATAATCGCGA TATCTCACCA AGAAAATATT CAACAGGTTT TTGTTCCCTA 661 TTGATTGGGA TGAGGATTTC AACAACCATA AAATAATCCA AGTTGTATTT TAAGTTTGAG 721 AAAAAAAAAA AA Predicted gene structure (within gDNA segment 26391 to 24260): Exon 1 25682 24961 ( 722 n); cDNA 1 721 ( 721 n); score: 0.996 PPA cDNA 722 732 MATCH C08SLe0082C24.1- SGN-U332956- 0.996 722 0.986 C PGS_C08SLe0082C24.1-_SGN-U332956- (25682 24961) Alignment (genomic DNA sequence = upper lines): GAACTCCATT GAAGCTCCAA CTTTGGATAT TATTTTTATA CCGGCAGGCA GCTGAAATGA 25623 ||||||||| ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GAACTCCATG AAAGCTCCAA CTTTGGATAT TA-TTTTATA CCGGCAGGCA GCTGAAATGA 59 GATCTTTTTT ATGGTTAGGA ATGAATACAT GCTCAATTTT GAAATGTTAA GAGACATAAT 25563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTTTTT ATGGTTAGGA ATGAATACAT GCTCAATTTT GAAATGTTAA GAGACATAAT 119 AGAAGAGCAA AGAGACGAGC TATGAATACT TGTGGGAATA CACTAGATAT GTTGACAATT 25503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAGCAA AGAGACGAGC TATGAATACT TGTGGGAATA CACTAGATAT GTTGACAATT 179 ACTACTTTCA GGAGGTTTAT AGATCCAAAT ATCGGATTGG GAGAAGAGAT CAATGGTAGG 25443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACTTTCA GGAGGTTTAT AGATCCAAAT ATCGGATTGG GAGAAGAGAT CAATGGTAGG 239 AATCAGCAAC TACAACGGGT TGTTTGTGAA GGCGTTGTAT GGTTTATGGG AATTTGACAC 25383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAGCAAC TACAACGGGT TGTTTGTGAA GGCGTTGTAT GGTTTATGGG AATTTGACAC 299 CACATGATCT GCAGTTGAAG CTAGAGTTAT TCATGATCTT GAACTAATAG ATGCTCCTCT 25323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATGATCT GCAGTTGAAG CTAGAGTTAT TCATGATCTT GAACTAATAG ATGCTCCTCT 359 CTATTGGGGA AATTATACGT TAAACTAGGG ATATCCCATC AAGAAATGAC AGATTTTTAT 25263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGGGGA AATTATACGT TAAACTAGGG ATATCCCATC AAGAAATGAC AGATTTTTAT 419 TTCTCCATTG ATTGGGATGA TGATTTTTAC AACATAAAAC AATCTTTGCT CCCATTTATT 25203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCATTG ATTGGGATGA TGATTTTTAC AACATAAAAC AATCTTTGCT CCCATTTATT 479 ACACAAGATT TGAAGCTGAA AAGAAGAAAT AGTGTCATTT ACAACAATGC TTGAATTCTT 25143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAGATT TGAAGCTGAA AAGAAGAAAT AGTGTCATTT ACAACAATGC TTGAATTCTT 539 AGAGATTATT AATGATGTTG AACTAATAAA TCCTCCTTTC TTTGGGGGAA ATTATATGTG 25083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATTATT AATGATGTTG AACTAATAAA TCCTCCTTTC TTTGGGGGAA ATTATATGTG 599 GAACTAGGGA AATAATCGCG ATATCTCACC AAGAAAATAT TCAACAGGTT TTTGTTCCCT 25023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTAGGGA AATAATCGCG ATATCTCACC AAGAAAATAT TCAACAGGTT TTTGTTCCCT 659 ATTGATTGGG ATGAGGATTT CAACAACCAT AAAATAATCC AAGTTGTATT TTAAGTTTGA 24963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATTGGG ATGAGGATTT CAACAACCAT AAAATAATCC AAGTTGTATT TTAAGTTTGA 719 GA 24961 || GA 721 hqPGS_C08SLe0082C24.1-_SGN-U332956- (25682 24961) ******************************************************************************** EST sequence 31 +strand 699 n (File: SGN-U335117+) 1 AGGGTTCAGG GGGAAGCCTC TTCGCAATGT ATNACATCGG AAACGCTCGA GCTGCCCGCG 61 GTGGCGGCCG CTCTAGAACT AGTGGATCCC CCGGGCTGCA GGAATTCGGC ACGAGGGTTT 121 TAGGCCATGG GAGACTTATG AAGCTGATAT GTAGATAGAT TTGACGAAAC ACCATGCGCC 181 TGTAACGTTT TTGGATAAAT TTGCTTATTG GACTGTTAAG ATCCTTCGTT TCCCCACTGA 241 TGTATTTTTT CAGAGGAGAT ATGGTTGCAG AGCAATAGAA TTTAGGGGTG TTTTAAAAGG 301 GGGGAAGACA GTGGCGGCGG TGCCTGGAAT GGTGGGAGGT ATGTTGTTGC ATTGTAAGTC 361 ATTGAGGCGA TTCGAACATA TTGCTGGATG GATCAAGGCA GTGTGAGAAC AAACTGAAAA 421 CGAGAGGATG CATTTGATGA CCTTCATGGA AGTTGCAAAG CCAAATGTAT ACGAACGTGC 481 TCTGGTTTTC GCAGTGCAAG GCGTCTTCTT CAACGCTTAC TTTGCTGCAT ACCTTATTTC 541 CCCAAAATTG GCTCATCGTA TCGTCGGATA TTTGGAAGAA GAGGCTGTAC ATTCGTACAC 601 CGAGTTCCTC AAGGAATTGG ACAATGGTAA CATTGAGAAC GTTCCTGCTC CCGCTATTGC 661 TATTGATTAC TGGCGACTGC CTAAGGATGC CACTCTCCC Predicted gene structure (within gDNA segment 28767 to 25613): Exon 1 27031 27024 ( 8 n); cDNA 117 124 ( 8 n); score: 1.000 Intron 1 27023 26937 ( 87 n); Pd: 0.991 (s: 0), Pa: 0.998 (s: 0.98) Exon 2 26936 26808 ( 129 n); cDNA 125 253 ( 129 n); score: 0.992 Intron 2 26807 26686 ( 122 n); Pd: 0.996 (s: 1.00), Pa: 0.595 (s: 0.48) Exon 3 26685 26233 ( 453 n); cDNA 254 698 ( 445 n); score: 0.907 MATCH C08SLe0082C24.1- SGN-U335117+ 0.926 590 0.844 C PGS_C08SLe0082C24.1-_SGN-U335117+ (27031 27024,26936 26808,26685 26233) Alignment (genomic DNA sequence = upper lines): GTTTTAGGGT AAGTTTTAGT AAGGTTTTTC ACATATTTTT TTCTGATATA TATATTATGT 26972 |||||||| GTTTTAGG.. .......... .......... .......... .......... .......... 124 AGGATTAATG GTGGATTTTT TTTTTTTTGA TTTAGCCATG GGAGACTTAT GAAGCTGATA 26912 ||||| |||||||||| |||||||||| .......... .......... .......... .....CCATG GGAGACTTAT GAAGCTGATA 149 TGTCGATAGA TTTGACGAAA CACCATGCGC CTGTAACGTT TTTGGATAAA TTTGCTTATT 26852 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGATAGA TTTGACGAAA CACCATGCGC CTGTAACGTT TTTGGATAAA TTTGCTTATT 209 GGACTGTTAA GATCCTTCGT TTCCCCACTG ATGTATTTTT TCAGGTACGT AATATAATAA 26792 |||||||||| |||||||||| |||||||||| |||||||||| |||| GGACTGTTAA GATCCTTCGT TTCCCCACTG ATGTATTTTT TCAG...... .......... 253 AATTCCCAGT ATATAGGAAA CTGGAAAAAA AATTCAATGC AATTTCCCAT AATTTCGGAA 26732 .......... .......... .......... .......... .......... .......... 253 TTTTATAATA GTGAAATTGA ATTGAAAATT TCGAATGAAA TCATAGAGAG ATGATTTAAT 26672 || | | || || .......... .......... .......... .......... ......AG-G A-GA--TATG 263 TTTGATGTGG TGCAGAGGAG ATATGGTTGC AGAGCAATGA TGTTAGAGAC AGTGGCGGCG 26612 ||| | | | || | || || || || | | | |||| |||||||||| GTTGCAG-AG -CAATAGAAT TTAGGGGTG- TTTTAAAAGG GGGGA-AGAC AGTGGCGGCG 319 GTGCCTGGAA TGGTGGGAGG TATGTTGTTG CATTGTAAGT CATTGAGGCG ATTCGAACAG 26552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTGCCTGGAA TGGTGGGAGG TATGTTGTTG CATTGTAAGT CATTGAGGCG ATTCGAACAT 379 AGTGGTGGAT GGATCAAAGC TCTGTTAGAA GAAGCTGAAA ACGAGAGGAT GCATTTGATG 26492 | || ||||| ||||||| || ||| |||| || |||||| |||||||||| |||||||||| ATTGCTGGAT GGATCAAGGC AGTGTGAGAA CAAACTGAAA ACGAGAGGAT GCATTTGATG 439 ACTTTCATGG AAGTTGCAAA GCCAAATGTA TACGAACGTG CTCTGGTTTT CGCAGTGCAA 26432 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTCATGG AAGTTGCAAA GCCAAATGTA TACGAACGTG CTCTGGTTTT CGCAGTGCAA 499 GGCGTCTTCT TCAACGCTTA CTTTGCTGCA TACCTTATTT CCCCAAAATT GGCTCATCGT 26372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGTCTTCT TCAACGCTTA CTTTGCTGCA TACCTTATTT CCCCAAAATT GGCTCATCGT 559 ATCGTCGGAT ATTTGGAAGA AGAGGCTGTA CATTCGTACA CCGAGTTCCT CAAGGAATTG 26312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTCGGAT ATTTGGAAGA AGAGGCTGTA CATTCGTACA CCGAGTTCCT CAAGGAATTG 619 GACAATGGTA ACATTGAGAA CGTTCCTGCT CCCGCTATTG CTATTGATTA CTGGCGACTG 26252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGGTA ACATTGAGAA CGTTCCTGCT CCCGCTATTG CTATTGATTA CTGGCGACTG 679 CCTAAGGATG CCACTCTCC 26233 |||||||||| ||||||||| CCTAAGGATG CCACTCTCC 698 hqPGS_C08SLe0082C24.1-_SGN-U335117+ (27031 27024,26936 26808,26685 26233) ******************************************************************************** EST sequence 38 +strand 986 n (File: SGN-U338437+) 1 TTATTTTGTT AAATTTCAAT CATTTGAATA TGAATCGTAA TGCAGCAATG AAAATATCTG 61 GATTACTTAT GAGACAATTA CGGGGCGAAT TTTTGCCCCG TGGAGGCATG GTACAAATTC 121 GTCATTGGAG TAATATGAAT ACTTCTAGTA AAACAAAAGA AGAACAAAAA ACACATAATC 181 AACCATCACA CACTGATGCA ACCAACGCCG CCGGCGACAA GGCTAAGAAA ATTGTTAGCT 241 ATTGGGGGGT GGATCCTCCC AAAATCTCCA AGGAAGATGG TACACCATGG AAGTGGAACA 301 GCTTCAGGCC ATGGGAGACG TACTCAGCTG ATATTTCAAT TGATGTGGAG AAGCACCATA 361 TGCCTACCAA TTTTATGGAC AAGTTTGCTT ATTGGACAGT CCAATCTTTA AAGTACCCCA 421 CCTACTTGTT TTTCCAGAGA CGTCACATGT GTCATGCTAT GTTACTAGAA ACGGTTGCAG 481 CCGTGCCAGG CATGGTAGGT GGTATGCTCC TCCACTGTAA ATCCCTCCGT CGATTCGAGC 541 ACAGTGGTGG TTGGATCAAA GCCCTCCTCG AAGAAGCAGA GAACGAACGG ATGCATCTCA 601 TGACCTTTAT CGAATTATCA AATCCGAAAT GGTACGAACG TGCATTAGTC TTTGCAGTTC 661 AAGGCGTATT TGTCAATGCC TATTTCATTG CCTATTTAGC GTCCCCAAAA TTGGCTCATC 721 GAATTGTTGG TTACTTAGAA GAAGAAGCAG TAAATTCGTA TACAGAGTTT TTGATCGATA 781 TAGAAAAGGG ACTTTTCGAG AACTCGCCTG CACCGGCTAT TGCTATTGAT TATTGGCGTT 841 TGCCGGCCGA TGCAACGCTA AAAGATGTTG TTACTGTTAT TAGGGCCGAT GAGGCACATC 901 ATCGGGACCT AAATCACTTT GCTTCGGATA TACAGTGTCA AGGGCATGAG TTGAAGGGCT 961 ACCCTGCCCC AATTGGATAT CATTGA Predicted gene structure (within gDNA segment 33245 to 29296): Exon 1 32645 32338 ( 308 n); cDNA 1 308 ( 308 n); score: 1.000 Intron 1 32337 32056 ( 282 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 32055 31927 ( 129 n); cDNA 309 437 ( 129 n); score: 1.000 Intron 2 31926 30557 (1370 n); Pd: 0.987 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 30556 30068 ( 489 n); cDNA 438 926 ( 489 n); score: 1.000 Intron 3 30067 29966 ( 102 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 29965 29906 ( 60 n); cDNA 927 986 ( 60 n); score: 1.000 MATCH C08SLe0082C24.1- SGN-U338437+ 1.000 986 1.000 C PGS_C08SLe0082C24.1-_SGN-U338437+ (32645 32338,32055 31927,30556 30068,29965 29906) Alignment (genomic DNA sequence = upper lines): TTATTTTGTT AAATTTCAAT CATTTGAATA TGAATCGTAA TGCAGCAATG AAAATATCTG 32586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTTGTT AAATTTCAAT CATTTGAATA TGAATCGTAA TGCAGCAATG AAAATATCTG 60 GATTACTTAT GAGACAATTA CGGGGCGAAT TTTTGCCCCG TGGAGGCATG GTACAAATTC 32526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTACTTAT GAGACAATTA CGGGGCGAAT TTTTGCCCCG TGGAGGCATG GTACAAATTC 120 GTCATTGGAG TAATATGAAT ACTTCTAGTA AAACAAAAGA AGAACAAAAA ACACATAATC 32466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTGGAG TAATATGAAT ACTTCTAGTA AAACAAAAGA AGAACAAAAA ACACATAATC 180 AACCATCACA CACTGATGCA ACCAACGCCG CCGGCGACAA GGCTAAGAAA ATTGTTAGCT 32406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATCACA CACTGATGCA ACCAACGCCG CCGGCGACAA GGCTAAGAAA ATTGTTAGCT 240 ATTGGGGGGT GGATCCTCCC AAAATCTCCA AGGAAGATGG TACACCATGG AAGTGGAACA 32346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGGGGT GGATCCTCCC AAAATCTCCA AGGAAGATGG TACACCATGG AAGTGGAACA 300 GCTTCAGGGT ACGTACGCGA ATAATATATT CCCTTTATTC CGTTTTATAT GATTGACTTT 32286 |||||||| GCTTCAGG.. .......... .......... .......... .......... .......... 308 CTTTTTTAGT CAGAAAGAAT GACATATTTT TGTACTCTCT CTGAAACGAG ACAGAGGAAG 32226 .......... .......... .......... .......... .......... .......... 308 TATGTTTCTA AATTATGACT TACTTATAAG GCTATAACTA AATCTCTTTT AGATAACTTG 32166 .......... .......... .......... .......... .......... .......... 308 ATCGTGTAAA AATATTTTAT ATTGATACTA TATATAACTT AAACTCATAA TTTTAATTAT 32106 .......... .......... .......... .......... .......... .......... 308 ATATATATAT ATATATATAT ATATTTTTTT TTTTTTTTTG GTTTTGACAG CCATGGGAGA 32046 |||||||||| .......... .......... .......... .......... .......... CCATGGGAGA 318 CGTACTCAGC TGATATTTCA ATTGATGTGG AGAAGCACCA TATGCCTACC AATTTTATGG 31986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTACTCAGC TGATATTTCA ATTGATGTGG AGAAGCACCA TATGCCTACC AATTTTATGG 378 ACAAGTTTGC TTATTGGACA GTCCAATCTT TAAAGTACCC CACCTACTTG TTTTTCCAGG 31926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACAAGTTTGC TTATTGGACA GTCCAATCTT TAAAGTACCC CACCTACTTG TTTTTCCAG. 437 TCAACATCTT GACTCTCTTA TTATTAAAAA AAATAATTTT AGTTAAATGA TTTTTTACTA 31866 .......... .......... .......... .......... .......... .......... 437 CTACTATAAA TTATTGCAAC AAGATTTTTT CAATATTAAA TTAAACTAAA TAATGATCCC 31806 .......... .......... .......... .......... .......... .......... 437 AATAATTAAA TTAAAAAAAA AAAAAAGACA ACGTGATCTT ACCGCACTAG TTGGAGAAAA 31746 .......... .......... .......... .......... .......... .......... 437 TGACAAAATG GTATCGGCGC GATATGTTTA AAATACTCCT TTACATATAT TGTTTAATAA 31686 .......... .......... .......... .......... .......... .......... 437 TAAATTAAAA AAGAGCATCT TTGGTTTTCA TTTAAAAAAT TTAACAAACT ATCTCAGATA 31626 .......... .......... .......... .......... .......... .......... 437 TATTTACACT ATATCTGGAT CATTGTTATC TACTGTATTG TACAGTAACA TTATTATACT 31566 .......... .......... .......... .......... .......... .......... 437 TACAATATTT GTTTGGATTA TTACTTAAAA TGTATTGTAT TGTATTATAA AATTTGGTTG 31506 .......... .......... .......... .......... .......... .......... 437 TTAAGTAATA ATGAAAACCA CTATTTTATA GAACATTCAA TTTGGTGTGT TCCCATTGTT 31446 .......... .......... .......... .......... .......... .......... 437 ACTTAATATC CTTTTTCAAT TATATATTTA CATAATATTT TAAAATACTA TTTTACCCTT 31386 .......... .......... .......... .......... .......... .......... 437 TATCTTAATT ATTTGAATCT ACTAAAACCT CCTACCATAG AATAATTAGG ATATTTTAGT 31326 .......... .......... .......... .......... .......... .......... 437 AAATTTATAA ATTACAATAC AGTACGTACT ATCAAACCAA ACAATTAAAA TGTTATTAAA 31266 .......... .......... .......... .......... .......... .......... 437 CAACAACATA CAATACAGTC TAGCCAAACA TTGTATCTAC CATACAATAC AGTACAATAG 31206 .......... .......... .......... .......... .......... .......... 437 AGTACAATAC AATACAATAC ATTATGAAAC AATCGGTAAC AATGATCCAA ACAAAGTGTT 31146 .......... .......... .......... .......... .......... .......... 437 AAAAGGGAAT TTTGTTTCAA AAAAATCGAT TTAAAGTCAT ATCACAAAAA TATTTATAGA 31086 .......... .......... .......... .......... .......... .......... 437 TTAATACGAA TGAAAAATTA AAATTTAAAC GCTCAAAAAT ATCGTAATTC ATAATGAGGT 31026 .......... .......... .......... .......... .......... .......... 437 TATATGTACG ATTTCCTAGC TCGTCGTAGA GAATCTCTTA AAGTTATTTA AAAAAATCGA 30966 .......... .......... .......... .......... .......... .......... 437 CCAGGGGATA AAATATAACT AGAAATTTGT TAAGAAAGTC CCATAAAATT GTAACAATTG 30906 .......... .......... .......... .......... .......... .......... 437 CTATATAAAA GAAATTCCAT TACACATCAA AAATAAATAA ACAAGATTAG AAATTCGGAG 30846 .......... .......... .......... .......... .......... .......... 437 TCTAAAAAAA AATAGTATAA TTGTAGAAAT TAGACCTCTA AATATAAATT CCTTCAGAAA 30786 .......... .......... .......... .......... .......... .......... 437 CTCTTTTTCC CTCTCATAAG TTTCTATCAA ATCTAATTAA TATATATTCA TTTAAATGAT 30726 .......... .......... .......... .......... .......... .......... 437 TGAACAAAAA TTGTTCATAC TCAATTTTAG TGAACTTATT TAAAAGACCA AAATTAATGA 30666 .......... .......... .......... .......... .......... .......... 437 AAAGTATATT GAAACTCCAA AAAAACACAA GGGACCATTA CCTACTATAA CCCTATACAT 30606 .......... .......... .......... .......... .......... .......... 437 TATTATAACG TTTAATTTAT ATACACTAAC AGTATATTTA ATTTCGCAGA GACGTCACAT 30546 | |||||||||| .......... .......... .......... .......... .........A GACGTCACAT 448 GTGTCATGCT ATGTTACTAG AAACGGTTGC AGCCGTGCCA GGCATGGTAG GTGGTATGCT 30486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCATGCT ATGTTACTAG AAACGGTTGC AGCCGTGCCA GGCATGGTAG GTGGTATGCT 508 CCTCCACTGT AAATCCCTCC GTCGATTCGA GCACAGTGGT GGTTGGATCA AAGCCCTCCT 30426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCACTGT AAATCCCTCC GTCGATTCGA GCACAGTGGT GGTTGGATCA AAGCCCTCCT 568 CGAAGAAGCA GAGAACGAAC GGATGCATCT CATGACCTTT ATCGAATTAT CAAATCCGAA 30366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGAAGCA GAGAACGAAC GGATGCATCT CATGACCTTT ATCGAATTAT CAAATCCGAA 628 ATGGTACGAA CGTGCATTAG TCTTTGCAGT TCAAGGCGTA TTTGTCAATG CCTATTTCAT 30306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTACGAA CGTGCATTAG TCTTTGCAGT TCAAGGCGTA TTTGTCAATG CCTATTTCAT 688 TGCCTATTTA GCGTCCCCAA AATTGGCTCA TCGAATTGTT GGTTACTTAG AAGAAGAAGC 30246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTATTTA GCGTCCCCAA AATTGGCTCA TCGAATTGTT GGTTACTTAG AAGAAGAAGC 748 AGTAAATTCG TATACAGAGT TTTTGATCGA TATAGAAAAG GGACTTTTCG AGAACTCGCC 30186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAAATTCG TATACAGAGT TTTTGATCGA TATAGAAAAG GGACTTTTCG AGAACTCGCC 808 TGCACCGGCT ATTGCTATTG ATTATTGGCG TTTGCCGGCC GATGCAACGC TAAAAGATGT 30126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACCGGCT ATTGCTATTG ATTATTGGCG TTTGCCGGCC GATGCAACGC TAAAAGATGT 868 TGTTACTGTT ATTAGGGCCG ATGAGGCACA TCATCGGGAC CTAAATCACT TTGCTTCGGT 30066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGTTACTGTT ATTAGGGCCG ATGAGGCACA TCATCGGGAC CTAAATCACT TTGCTTCG.. 926 GAGATTTTTC TACTTTTAAT TTTGTACGTT CGAATTTTTA TAGTATTAAA AAGAACTATT 30006 .......... .......... .......... .......... .......... .......... 926 TGTGTTTTTT AAAAATTTAA ATTTTTTTTT TGTTACACAG GATATACAGT GTCAAGGGCA 29946 |||||||||| |||||||||| .......... .......... .......... .......... GATATACAGT GTCAAGGGCA 946 TGAGTTGAAG GGCTACCCTG CCCCAATTGG ATATCATTGA 29906 |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTGAAG GGCTACCCTG CCCCAATTGG ATATCATTGA 986 hqPGS_C08SLe0082C24.1-_SGN-U338437+ (32645 32338,32055 31927,30556 30068,29965 29906) ******************************************************************************** EST sequence 37 +strand 842 n (File: SGN-U327108+) 1 AAAACACATA ATCAACCATC ACACACTGAT GCAACCAACG CCGCCGGCGA CAAGGCTAAG 61 AAAATTGTTA GCTATTGGGG GGTGGATCCT CCCAAAATCT CCAAGGAAGA TGGTACACCA 121 TGGAAGTGGA ACAGCTTCAG GGTACGTACG CGAATAATAT ATTCCCTTTA TTCCGTTTTA 181 TATGATTGAC TTTCTTTTTT AGTCAGAAAG AATGACATAT TTTTGTACTC TCTCTGAAAC 241 GAGACAGAGG AAGTATGTTT CTAAATTATG ACTTACTTAT AAGGCTATAA CTAAATCTCT 301 TTTAGATAAC TTGATCGTGT AAAAATATTT TATATTGATA CTATATATAA CTTAAACTCA 361 TAATTTTAAT TATATATATA TATATATATA TATATATTTT TTTTTTTTTT TTTTTTGGGT 421 TTGACAGCCA TGGGAGACGT ACTCAGCTGA TATTTCAATT GATGTGGAGA AGCACCATAT 481 GCCTACCAAT TTTATGGACA AGTTTGCTTA TTGGACAGTC CAATCTTTAA AGTACCCCAC 541 CTACTTGTTT TTCCAGAGAC GTCACATGTG TCATGCTATG TTACTAGAAA CGGTTGCAGC 601 CGTGCCAGGC ATGGTAGGTG GTATGCTCCT CCACTGTAAA TCCCTCCGTC GATTCGAGCA 661 CAGTGGTGGT TGGATCAAAG CCCTCCTCGA AGAAGCAGAG AACGAACGGA TGCATCTCAT 721 GACCTTTATC GAATTATCAA ATCCGAAATG GTACGAACGT GCATTAGTCT TTGCAGTTCA 781 AGGCGTATTT GTCAATGCCT ATTTCATTGC CTATTTAGCG TCCCCAAAAT TGGCTCATCG 841 AA Predicted gene structure (within gDNA segment 33078 to 29661): Exon 1 32478 31927 ( 552 n); cDNA 1 556 ( 556 n); score: 0.980 Intron 1 31926 30557 (1370 n); Pd: 0.987 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 30556 30271 ( 286 n); cDNA 557 842 ( 286 n); score: 1.000 MATCH C08SLe0082C24.1- SGN-U327108+ 0.987 838 0.995 C PGS_C08SLe0082C24.1-_SGN-U327108+ (32478 31927,30556 30271) Alignment (genomic DNA sequence = upper lines): AAAACACATA ATCAACCATC ACACACTGAT GCAACCAACG CCGCCGGCGA CAAGGCTAAG 32419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACACATA ATCAACCATC ACACACTGAT GCAACCAACG CCGCCGGCGA CAAGGCTAAG 60 AAAATTGTTA GCTATTGGGG GGTGGATCCT CCCAAAATCT CCAAGGAAGA TGGTACACCA 32359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTGTTA GCTATTGGGG GGTGGATCCT CCCAAAATCT CCAAGGAAGA TGGTACACCA 120 TGGAAGTGGA ACAGCTTCAG GGTACGTACG CGAATAATAT ATTCCCTTTA TTCCGTTTTA 32299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGTGGA ACAGCTTCAG GGTACGTACG CGAATAATAT ATTCCCTTTA TTCCGTTTTA 180 TATGATTGAC TTTCTTTTTT AGTCAGAAAG AATGACATAT TTTTGTACTC TCTCTGAAAC 32239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATTGAC TTTCTTTTTT AGTCAGAAAG AATGACATAT TTTTGTACTC TCTCTGAAAC 240 GAGACAGAGG AAGTATGTTT CTAAATTATG ACTTACTTAT AAGGCTATAA CTAAATCTCT 32179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACAGAGG AAGTATGTTT CTAAATTATG ACTTACTTAT AAGGCTATAA CTAAATCTCT 300 TTTAGATAAC TTGATCGTGT AAAAATATTT TATATTGATA CTATATATAA CTTAAACTCA 32119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGATAAC TTGATCGTGT AAAAATATTT TATATTGATA CTATATATAA CTTAAACTCA 360 TAATTTTAAT TATATATATA TATATATATA TATATA---- TTTTTTTTTT TTTTTTGGTT 32063 |||||||||| |||||||||| |||||||||| |||||| |||||||||| |||||||| | TAATTTTAAT TATATATATA TATATATATA TATATATTTT TTTTTTTTTT TTTTTTGGGT 420 TTGACAGCCA TGGGAGACGT ACTCAGCTGA TATTTCAATT GATGTGGAGA AGCACCATAT 32003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAGCCA TGGGAGACGT ACTCAGCTGA TATTTCAATT GATGTGGAGA AGCACCATAT 480 GCCTACCAAT TTTATGGACA AGTTTGCTTA TTGGACAGTC CAATCTTTAA AGTACCCCAC 31943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTACCAAT TTTATGGACA AGTTTGCTTA TTGGACAGTC CAATCTTTAA AGTACCCCAC 540 CTACTTGTTT TTCCAGGTCA ACATCTTGAC TCTCTTATTA TTAAAAAAAA TAATTTTAGT 31883 |||||||||| |||||| CTACTTGTTT TTCCAG.... .......... .......... .......... .......... 556 TAAATGATTT TTTACTACTA CTATAAATTA TTGCAACAAG ATTTTTTCAA TATTAAATTA 31823 .......... .......... .......... .......... .......... .......... 556 AACTAAATAA TGATCCCAAT AATTAAATTA AAAAAAAAAA AAAGACAACG TGATCTTACC 31763 .......... .......... .......... .......... .......... .......... 556 GCACTAGTTG GAGAAAATGA CAAAATGGTA TCGGCGCGAT ATGTTTAAAA TACTCCTTTA 31703 .......... .......... .......... .......... .......... .......... 556 CATATATTGT TTAATAATAA ATTAAAAAAG AGCATCTTTG GTTTTCATTT AAAAAATTTA 31643 .......... .......... .......... .......... .......... .......... 556 ACAAACTATC TCAGATATAT TTACACTATA TCTGGATCAT TGTTATCTAC TGTATTGTAC 31583 .......... .......... .......... .......... .......... .......... 556 AGTAACATTA TTATACTTAC AATATTTGTT TGGATTATTA CTTAAAATGT ATTGTATTGT 31523 .......... .......... .......... .......... .......... .......... 556 ATTATAAAAT TTGGTTGTTA AGTAATAATG AAAACCACTA TTTTATAGAA CATTCAATTT 31463 .......... .......... .......... .......... .......... .......... 556 GGTGTGTTCC CATTGTTACT TAATATCCTT TTTCAATTAT ATATTTACAT AATATTTTAA 31403 .......... .......... .......... .......... .......... .......... 556 AATACTATTT TACCCTTTAT CTTAATTATT TGAATCTACT AAAACCTCCT ACCATAGAAT 31343 .......... .......... .......... .......... .......... .......... 556 AATTAGGATA TTTTAGTAAA TTTATAAATT ACAATACAGT ACGTACTATC AAACCAAACA 31283 .......... .......... .......... .......... .......... .......... 556 ATTAAAATGT TATTAAACAA CAACATACAA TACAGTCTAG CCAAACATTG TATCTACCAT 31223 .......... .......... .......... .......... .......... .......... 556 ACAATACAGT ACAATAGAGT ACAATACAAT ACAATACATT ATGAAACAAT CGGTAACAAT 31163 .......... .......... .......... .......... .......... .......... 556 GATCCAAACA AAGTGTTAAA AGGGAATTTT GTTTCAAAAA AATCGATTTA AAGTCATATC 31103 .......... .......... .......... .......... .......... .......... 556 ACAAAAATAT TTATAGATTA ATACGAATGA AAAATTAAAA TTTAAACGCT CAAAAATATC 31043 .......... .......... .......... .......... .......... .......... 556 GTAATTCATA ATGAGGTTAT ATGTACGATT TCCTAGCTCG TCGTAGAGAA TCTCTTAAAG 30983 .......... .......... .......... .......... .......... .......... 556 TTATTTAAAA AAATCGACCA GGGGATAAAA TATAACTAGA AATTTGTTAA GAAAGTCCCA 30923 .......... .......... .......... .......... .......... .......... 556 TAAAATTGTA ACAATTGCTA TATAAAAGAA ATTCCATTAC ACATCAAAAA TAAATAAACA 30863 .......... .......... .......... .......... .......... .......... 556 AGATTAGAAA TTCGGAGTCT AAAAAAAAAT AGTATAATTG TAGAAATTAG ACCTCTAAAT 30803 .......... .......... .......... .......... .......... .......... 556 ATAAATTCCT TCAGAAACTC TTTTTCCCTC TCATAAGTTT CTATCAAATC TAATTAATAT 30743 .......... .......... .......... .......... .......... .......... 556 ATATTCATTT AAATGATTGA ACAAAAATTG TTCATACTCA ATTTTAGTGA ACTTATTTAA 30683 .......... .......... .......... .......... .......... .......... 556 AAGACCAAAA TTAATGAAAA GTATATTGAA ACTCCAAAAA AACACAAGGG ACCATTACCT 30623 .......... .......... .......... .......... .......... .......... 556 ACTATAACCC TATACATTAT TATAACGTTT AATTTATATA CACTAACAGT ATATTTAATT 30563 .......... .......... .......... .......... .......... .......... 556 TCGCAGAGAC GTCACATGTG TCATGCTATG TTACTAGAAA CGGTTGCAGC CGTGCCAGGC 30503 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AGAC GTCACATGTG TCATGCTATG TTACTAGAAA CGGTTGCAGC CGTGCCAGGC 610 ATGGTAGGTG GTATGCTCCT CCACTGTAAA TCCCTCCGTC GATTCGAGCA CAGTGGTGGT 30443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTAGGTG GTATGCTCCT CCACTGTAAA TCCCTCCGTC GATTCGAGCA CAGTGGTGGT 670 TGGATCAAAG CCCTCCTCGA AGAAGCAGAG AACGAACGGA TGCATCTCAT GACCTTTATC 30383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCAAAG CCCTCCTCGA AGAAGCAGAG AACGAACGGA TGCATCTCAT GACCTTTATC 730 GAATTATCAA ATCCGAAATG GTACGAACGT GCATTAGTCT TTGCAGTTCA AGGCGTATTT 30323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTATCAA ATCCGAAATG GTACGAACGT GCATTAGTCT TTGCAGTTCA AGGCGTATTT 790 GTCAATGCCT ATTTCATTGC CTATTTAGCG TCCCCAAAAT TGGCTCATCG AA 30271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTCAATGCCT ATTTCATTGC CTATTTAGCG TCCCCAAAAT TGGCTCATCG AA 842 hqPGS_C08SLe0082C24.1-_SGN-U327108+ (32478 31927,30556 30271) ******************************************************************************** EST sequence 21 -strand 1077 n (File: SGN-U340386-) 1 CAACCTGAAA AGGGGGGGAT TAGTTTAGGG TAGGTCCATG TCTTTTTTTT TAAGAATTTG 61 CCGGTGACCC CAATAAAAGA CCTCCTTTAT TTTTTTTTTA CCCTCATGCA CCCTGGTTTT 121 AAACAAATTC CAGTTCCAGC CGCCGTATCC TTTGGCCCCT TTCCACCTTT AAGAGGCTAG 181 GGTTCATCTT TCTTGGTCTT CTCCTCCTAA GAGATCACCC CCCCTACCCC TTTTTTAAAG 241 GTAAGATTTA AAACCAGAAC CCCAGCAATA AGCTTGTTTT GTACAGAGCA CTAACACTAT 301 GTTTGGATCA TTGTTATCCA TTGTATTGTA TCGTATTGTT ACTATACCTA TAATGTTTGT 361 TTTGAGTGTT ACTTAAAATG TATAGTACTG TATTGTTAAA TTTCGTTGTT ACTTAACAAT 421 GAAACCCCTG TTTTATGGAC AACCAATTTG GTGTGTTCCA ATTGTTACTT AATTTCTTTT 481 TTCAATTATA TCTTTATATT ATATTTTTAA ATACTATTTT ACCCTTTACC TTAATTATTT 541 AAATCTAGTC AAACCTCCTA CCCTAGAATA TTTAAGGACG TTTAAGTAAA TTTATAAATT 601 ACAATACAGT ACGCTATAAT CAAACAAAGC AATTAAAATG TTATTAAACA ACAACAAACA 661 ACGCAATCTA GCCAAACATT GTATATATCA TACAATACAG TACAATACAA TACAATACAT 721 TATGAAACAA TGAGTAACAA TGATCCAAAC AAAGAGTAAA GGTAAGCAAA AAAAGCAAAA 781 GTATATCCCT TTTCTAATCT TGAAGGCATT CTATGAGTTC TAACACAGAT TTTGTCTCAT 841 TTAGAAGTGT TATTTTACAA GACAAAAAAT GCAATTGACT TGTATCGTCC AAGAGGAGTT 901 GGATTTGGCT TTAAAACATC TTAATCGAGG AATGTAAAAA TTGTCTGACT AAATAGGCAA 961 TATGAGCTAT TCAAGATGAA TGAAGGAGAA TCCCTTAAAA GAGATGTTTA ATAGATCCAC 1021 TGACATCACC AATATTCCAC CCAATAAACG TTCTCCTCGT GCCGAATTCC TGCAACC Predicted gene structure (within gDNA segment 37778 to 27320): Exon 1 35622 35615 ( 8 n); cDNA 282 289 ( 8 n); score: 0.750 Intron 1 35614 31625 (3990 n); Pd: 0.810 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 31624 31151 ( 474 n); cDNA 290 753 ( 464 n); score: 0.842 Intron 2 31150 29966 (1185 n); Pd: 0.000 (s: 0.96), Pa: 1.000 (s: 0) Exon 3 29965 29956 ( 10 n); cDNA 754 763 ( 10 n); score: 0.500 Intron 3 29955 29188 ( 768 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 29187 29173 ( 15 n); cDNA 764 778 ( 15 n); score: 0.933 Intron 4 29172 28983 ( 190 n); Pd: 0.000 (s: 0), Pa: 0.261 (s: 0) Exon 5 28982 28969 ( 14 n); cDNA 779 792 ( 14 n); score: 0.786 MATCH C08SLe0082C24.1- SGN-U340386- 0.842 521 0.484 C PGS_C08SLe0082C24.1-_SGN-U340386- (35622 35615,31624 31151,29965 29956,29187 29173,28982 28969) Alignment (genomic DNA sequence = upper lines): TAAAGAGAGT GAGGACCAAA ACAAATAATA AATTTTATTT TCAAAACTTT CTTTTCATAA 35563 || |||| TACAGAGC.. .......... .......... .......... .......... .......... 289 ATATGTGTAT TTCTAATTAT TCTTTTTTCT TATTTATTTC CTTTCTTCTT CACAACAACA 35503 .......... .......... .......... .......... .......... .......... 289 TAAACTAAAT CTCTCGTATC ACTCACCTTC TCTAAATTTG GATCCACCAT GGAATTTCAT 35443 .......... .......... .......... .......... .......... .......... 289 TATTCTTCTT GATTCTAGAA TTTGTTTTCA ATTTGTGCAC GAAATTGAAA TTTTTTGAAA 35383 .......... .......... .......... .......... .......... .......... 289 ATCAATTCCT TATTAATATT ATTAAAATTT ATAATCATCA TGTCTAACCA CATGGCCAAA 35323 .......... .......... .......... .......... .......... .......... 289 TGGATTAGCA AATTCTTATC TTGATTTTTT TGTGCTTAGT TTAATAATTT AAATTCAAGT 35263 .......... .......... .......... .......... .......... .......... 289 TCAGAAAGAA TTTTGGATTG TCAACGAAAC CCATGTGTGA TTTTGAAAAT AGAAATGAAA 35203 .......... .......... .......... .......... .......... .......... 289 AGATCCATTG TTATGTATCC ATTACCTCAA TTTGAAGAAT TCAACAAATT CATCCATGAA 35143 .......... .......... .......... .......... .......... .......... 289 AATAACTTGA GTATCAATCA AATAGTAGAT GAAACAGTTA GAACTAAAAT TTTTACTAAA 35083 .......... .......... .......... .......... .......... .......... 289 TTTTACCTTT CAAATTGAAA AACTTTTGAT GTTTGCAAGA AGATGAAAAT GGTGGGAAAA 35023 .......... .......... .......... .......... .......... .......... 289 AGATTATTCA ATTGCAAAAA ATGAAAGATT ATCAAATATT TATAACTTTA CCTTTTAACA 34963 .......... .......... .......... .......... .......... .......... 289 ATAAAACTTG AAATTTCATA ACTGTACATT CCATAAAGGT AAGTTTAAAA CTAGCATAAA 34903 .......... .......... .......... .......... .......... .......... 289 TAAAAAACTT AGAAATTTTC TCTTCAATGG CAAAAAACGG AAAAAGAAAA AGAAAAGAAG 34843 .......... .......... .......... .......... .......... .......... 289 AAAATAGCTG GAAATAGAAA GAAAAAAATA TAAAAGAAAA ATAAAACAAA GAAAGACATC 34783 .......... .......... .......... .......... .......... .......... 289 ATAAATTTTT TATTAAAAAT TAATATATAT GACGTGGCAG GCAAGTGTGT TCACTCTCTA 34723 .......... .......... .......... .......... .......... .......... 289 ACAAAAATCT GAGTGTGACC TTTTAGGAGG CTATATATTT CATTTTTAAA ATGTTTTGAG 34663 .......... .......... .......... .......... .......... .......... 289 GAGTATTAAG TACCCCGCAA TGTATGAGTA TGTAGTTGAA AATCCAGGAA TAGATTAACG 34603 .......... .......... .......... .......... .......... .......... 289 GGTTTGACTC TTTTCTCAAA AAACTATGAT AAAGTATAGC TATGTATATT TAAATACATA 34543 .......... .......... .......... .......... .......... .......... 289 CTATTATGTA TCAATTTATT TGATGTAAAC ATTGTAAGTT TTTACTTACT TTCTCCATTT 34483 .......... .......... .......... .......... .......... .......... 289 CTATTTACTT GTCCAATTTT GACTGAGCAC ATTTATTAAG AAAATAATAA TTAACATAGT 34423 .......... .......... .......... .......... .......... .......... 289 GAATTTATCA TTTTATTTTT ATAATTAAAT AGATAGAATT TCAAGTCAAT TTACTCATTA 34363 .......... .......... .......... .......... .......... .......... 289 AAGATATTCT ACCTTTTTCA AAAACATTAA CTCTCCAAAT AAATCGAATC TATAACTGGT 34303 .......... .......... .......... .......... .......... .......... 289 AAAAAGATAT TTTTTTTCTT GATTAGTCAA AAATGACAAG TACAAAAGAT AAGTAAAAAA 34243 .......... .......... .......... .......... .......... .......... 289 TCAAAATTGA ACAAGTAAAA AGAAATATAT AAGGGAGTAT ATAATCTATA TATTTGAAGA 34183 .......... .......... .......... .......... .......... .......... 289 ATCTTGTAAT TTTCAAGTAA TTAAATTTGA TGCCCAGCAA TGCATAATCT GTATTTAATC 34123 .......... .......... .......... .......... .......... .......... 289 AAGACTTTAA TATAGTCGAG TGAAAAAAGA AGAAAGAAGT TGATTTTTTT AATAGTTTGA 34063 .......... .......... .......... .......... .......... .......... 289 AGTTGACATT TGATTTTCAA AAATTATTGT TAAATGTATT TAGTCTTTTT TGGTCAAAAT 34003 .......... .......... .......... .......... .......... .......... 289 ATAATCGTTC AAAAGCTTTT CAATCGTGTT AAGCAGCATT CTAGATTTTA AAATAAGGAA 33943 .......... .......... .......... .......... .......... .......... 289 CATTTTTAAG CTTAAATAAA TATATTTTAC GAGTCATTTT GCTAAAGTCA ATCCACTTAA 33883 .......... .......... .......... .......... .......... .......... 289 TCAAAATTGA CAATAAAAAA ACAAAGATGA CAATAAAGAA CTGTTTATTT GAAGAAAAAT 33823 .......... .......... .......... .......... .......... .......... 289 CTAATACAAT TAACCATAAT ATATTGGAAG AATAGTGTTT TTCGTACCCT CAATTATTGT 33763 .......... .......... .......... .......... .......... .......... 289 TATATAATTA TAACATGTGA TTTTGATATC TTTTTTTGAA AGTTATAAAT GCTTAGCGAA 33703 .......... .......... .......... .......... .......... .......... 289 ATATTATAAA GACTAAAATA GAAATTTATG ATATTTAAGG AACTTAGAGT CTATTTGGAT 33643 .......... .......... .......... .......... .......... .......... 289 TGGATTATTA CAAGTAGTCA AAATATTTTT TAAACATTTA CAAAAAGGTG GATAAATAAA 33583 .......... .......... .......... .......... .......... .......... 289 TAAAAATGAT TAATTTTAAG CTAAAATAAT AAAAATAGAT ACATAAAATA AAATTTATAA 33523 .......... .......... .......... .......... .......... .......... 289 CTTTAAGTCA AAAATTAAAA GCCATTCAAA CTAAATGAGA AAAGCGAAAA TTTCCTAAAT 33463 .......... .......... .......... .......... .......... .......... 289 AATATTTCTT GGTATCTTCT CATTAGGGCT GTTCAAAATC GAATCGAAAT TGATAAGCGA 33403 .......... .......... .......... .......... .......... .......... 289 ACTGATAAAA AAGTTATTGG TTTATATTAT TGGGTTATTG GTTTAGTGAT TTTGATGACG 33343 .......... .......... .......... .......... .......... .......... 289 ATTTTGATTT TTTTGTTATC TGGTTATCGG TTCTCAACTG TTTAAAGTTT TTTCTTAACG 33283 .......... .......... .......... .......... .......... .......... 289 GGTTAACAGA TAACCCGATA GTAAATTAAA TAATAATATT TATACCATTT TGTATATAAA 33223 .......... .......... .......... .......... .......... .......... 289 GTCCTCGATT TAGAGTTTAA TTTCCTACTT TTATTTTTGG TTGTCTCAAA TACTTGATTA 33163 .......... .......... .......... .......... .......... .......... 289 TTCTACAATG TAAAAGTGTT TGTTTTTTAG CAAGATGTAA CTTGTGAACT CAAGTGCATG 33103 .......... .......... .......... .......... .......... .......... 289 ATTTATTTAG TTAGTCCCCT TGTTTCTAAT TGATTTTTAA TGTTTTTTTT TTGTCAAATC 33043 .......... .......... .......... .......... .......... .......... 289 TTAACGATTA AATCGATAAC CGAACCGATA ACGATCAATA ACCGATAAAC TAATATCTTA 32983 .......... .......... .......... .......... .......... .......... 289 ATGGTTCTAT AACGATTTAG CATCTCTACA AATCGATAAC CAATAAGCCA ACCCGATAAA 32923 .......... .......... .......... .......... .......... .......... 289 CTTCAAAACC AAACCAAACC GGCCGATATA CCACCCTACT TCTCATATTA GTTCCTCCAA 32863 .......... .......... .......... .......... .......... .......... 289 GAAATTATGA AAATTTCCAT AACTAAAAGT CAAAGTAAAA TAAAAGTTGG CCACCACCAA 32803 .......... .......... .......... .......... .......... .......... 289 GAAGCAATAT CACTCTCCCA ATACTATGGA AAAGTCAATT CCAAACAACT TTCTCATACT 32743 .......... .......... .......... .......... .......... .......... 289 CTTTCATATA TTACATCATA TTCCTCCACT TTTTTCAACT TAAACACTAT ATATAAACCA 32683 .......... .......... .......... .......... .......... .......... 289 ACAATTTTTC ACCATAAAAA AACATCATCA ACATTTCTTA TTTTGTTAAA TTTCAATCAT 32623 .......... .......... .......... .......... .......... .......... 289 TTGAATATGA ATCGTAATGC AGCAATGAAA ATATCTGGAT TACTTATGAG ACAATTACGG 32563 .......... .......... .......... .......... .......... .......... 289 GGCGAATTTT TGCCCCGTGG AGGCATGGTA CAAATTCGTC ATTGGAGTAA TATGAATACT 32503 .......... .......... .......... .......... .......... .......... 289 TCTAGTAAAA CAAAAGAAGA ACAAAAAACA CATAATCAAC CATCACACAC TGATGCAACC 32443 .......... .......... .......... .......... .......... .......... 289 AACGCCGCCG GCGACAAGGC TAAGAAAATT GTTAGCTATT GGGGGGTGGA TCCTCCCAAA 32383 .......... .......... .......... .......... .......... .......... 289 ATCTCCAAGG AAGATGGTAC ACCATGGAAG TGGAACAGCT TCAGGGTACG TACGCGAATA 32323 .......... .......... .......... .......... .......... .......... 289 ATATATTCCC TTTATTCCGT TTTATATGAT TGACTTTCTT TTTTAGTCAG AAAGAATGAC 32263 .......... .......... .......... .......... .......... .......... 289 ATATTTTTGT ACTCTCTCTG AAACGAGACA GAGGAAGTAT GTTTCTAAAT TATGACTTAC 32203 .......... .......... .......... .......... .......... .......... 289 TTATAAGGCT ATAACTAAAT CTCTTTTAGA TAACTTGATC GTGTAAAAAT ATTTTATATT 32143 .......... .......... .......... .......... .......... .......... 289 GATACTATAT ATAACTTAAA CTCATAATTT TAATTATATA TATATATATA TATATATATA 32083 .......... .......... .......... .......... .......... .......... 289 TTTTTTTTTT TTTTTTGGTT TTGACAGCCA TGGGAGACGT ACTCAGCTGA TATTTCAATT 32023 .......... .......... .......... .......... .......... .......... 289 GATGTGGAGA AGCACCATAT GCCTACCAAT TTTATGGACA AGTTTGCTTA TTGGACAGTC 31963 .......... .......... .......... .......... .......... .......... 289 CAATCTTTAA AGTACCCCAC CTACTTGTTT TTCCAGGTCA ACATCTTGAC TCTCTTATTA 31903 .......... .......... .......... .......... .......... .......... 289 TTAAAAAAAA TAATTTTAGT TAAATGATTT TTTACTACTA CTATAAATTA TTGCAACAAG 31843 .......... .......... .......... .......... .......... .......... 289 ATTTTTTCAA TATTAAATTA AACTAAATAA TGATCCCAAT AATTAAATTA AAAAAAAAAA 31783 .......... .......... .......... .......... .......... .......... 289 AAAGACAACG TGATCTTACC GCACTAGTTG GAGAAAATGA CAAAATGGTA TCGGCGCGAT 31723 .......... .......... .......... .......... .......... .......... 289 ATGTTTAAAA TACTCCTTTA CATATATTGT TTAATAATAA ATTAAAAAAG AGCATCTTTG 31663 .......... .......... .......... .......... .......... .......... 289 GTTTTCATTT AAAAAATTTA ACAAACTATC TCAGATATAT TTACACTATA TCTGGATCAT 31603 | | ||||||| | |||||||| .......... .......... .......... ........AC TAACACTATG TTTGGATCAT 311 TGTTATCTAC TGTATTGTAC AGTAACATTA TTATACTTAC AATATTTGTT TGGATTATTA 31543 ||||||| | ||||||||| ||| ||| ||||| || ||| |||||| | || | ||| TGTTATCCAT TGTATTGTAT CGTATTGTTA CTATACCTAT AATGTTTGTT TTGAGTGTTA 371 CTTAAAATGT ATTGTATTGT ATTATAAAAT TTGGTTGTTA AGTAATAATG AAAACCACTA 31483 |||||||||| || ||| ||| ||| | |||| || ||||||| ||| |||| ||||| || CTTAAAATGT ATAGTACTGT ATTGTTAAAT TTCGTTGTTA CTTAACAATG -AAACCCCTG 430 TTTTATAGAA CATTCAATTT GGTGTGTTCC CATTGTTACT TAATATCCTT TTTCAATTAT 31423 |||||| | | || |||||| |||||||||| ||||||||| |||| || || |||||||||| TTTTAT-GGA CAACCAATTT GGTGTGTTCC AATTGTTACT TAATTTCTTT TTTCAATTAT 489 ATATTTACAT AATATTTTAA AATACTATTT TACCCTTTAT CTTAATTATT TGAATCTACT 31363 || |||| || ||||||| | |||||||||| ||||||||| |||||||||| | |||||| | ATCTTTATAT TATATTTTTA AATACTATTT TACCCTTTAC CTTAATTATT TAAATCTAGT 549 AAAACCTCCT ACCATAGAAT AATT-AGGAT ATTTTAGTAA ATTTATAAAT TACAATACAG 31304 ||||||||| ||| |||||| | || |||| ||| ||||| |||||||||| |||||||||| CAAACCTCCT ACCCTAGAAT ATTTAAGGAC GTTTAAGTAA ATTTATAAAT TACAATACAG 609 TACG-TACTA TCAAACCAAA CAATTAAAAT GTTATTAAAC AACAACATAC AATACAGTCT 31245 |||| || | |||||| || |||||||||| |||||||||| ||||||| || || || ||| TACGCTATAA TCAAACAAAG CAATTAAAAT GTTATTAAAC AACAACAAAC AACGCAATCT 669 AGCCAAACAT TGTATCTACC ATACAATACA GTACAATAGA GTACAATACA ATACAATACA 31185 |||||||||| |||| | || || || ||||||| | |||||||||| |||||||||| AGCCAAACAT TGTA--T--- AT---AT-CA -TACAATACA GTACAATACA ATACAATACA 719 TTATGAAACA ATCGGTAACA ATGATCCAAA CAAAGTGTTA AAAGGGAATT TTGTTTCAAA 31125 |||||||||| || |||||| |||||||||| |||| TTATGAAACA ATGAGTAACA ATGATCCAAA CAAA...... .......... .......... 753 AAAATCGATT TAAAGTCATA TCACAAAAAT ATTTATAGAT TAATACGAAT GAAAAATTAA 31065 .......... .......... .......... .......... .......... .......... 753 AATTTAAACG CTCAAAAATA TCGTAATTCA TAATGAGGTT ATATGTACGA TTTCCTAGCT 31005 .......... .......... .......... .......... .......... .......... 753 CGTCGTAGAG AATCTCTTAA AGTTATTTAA AAAAATCGAC CAGGGGATAA AATATAACTA 30945 .......... .......... .......... .......... .......... .......... 753 GAAATTTGTT AAGAAAGTCC CATAAAATTG TAACAATTGC TATATAAAAG AAATTCCATT 30885 .......... .......... .......... .......... .......... .......... 753 ACACATCAAA AATAAATAAA CAAGATTAGA AATTCGGAGT CTAAAAAAAA ATAGTATAAT 30825 .......... .......... .......... .......... .......... .......... 753 TGTAGAAATT AGACCTCTAA ATATAAATTC CTTCAGAAAC TCTTTTTCCC TCTCATAAGT 30765 .......... .......... .......... .......... .......... .......... 753 TTCTATCAAA TCTAATTAAT ATATATTCAT TTAAATGATT GAACAAAAAT TGTTCATACT 30705 .......... .......... .......... .......... .......... .......... 753 CAATTTTAGT GAACTTATTT AAAAGACCAA AATTAATGAA AAGTATATTG AAACTCCAAA 30645 .......... .......... .......... .......... .......... .......... 753 AAAACACAAG GGACCATTAC CTACTATAAC CCTATACATT ATTATAACGT TTAATTTATA 30585 .......... .......... .......... .......... .......... .......... 753 TACACTAACA GTATATTTAA TTTCGCAGAG ACGTCACATG TGTCATGCTA TGTTACTAGA 30525 .......... .......... .......... .......... .......... .......... 753 AACGGTTGCA GCCGTGCCAG GCATGGTAGG TGGTATGCTC CTCCACTGTA AATCCCTCCG 30465 .......... .......... .......... .......... .......... .......... 753 TCGATTCGAG CACAGTGGTG GTTGGATCAA AGCCCTCCTC GAAGAAGCAG AGAACGAACG 30405 .......... .......... .......... .......... .......... .......... 753 GATGCATCTC ATGACCTTTA TCGAATTATC AAATCCGAAA TGGTACGAAC GTGCATTAGT 30345 .......... .......... .......... .......... .......... .......... 753 CTTTGCAGTT CAAGGCGTAT TTGTCAATGC CTATTTCATT GCCTATTTAG CGTCCCCAAA 30285 .......... .......... .......... .......... .......... .......... 753 ATTGGCTCAT CGAATTGTTG GTTACTTAGA AGAAGAAGCA GTAAATTCGT ATACAGAGTT 30225 .......... .......... .......... .......... .......... .......... 753 TTTGATCGAT ATAGAAAAGG GACTTTTCGA GAACTCGCCT GCACCGGCTA TTGCTATTGA 30165 .......... .......... .......... .......... .......... .......... 753 TTATTGGCGT TTGCCGGCCG ATGCAACGCT AAAAGATGTT GTTACTGTTA TTAGGGCCGA 30105 .......... .......... .......... .......... .......... .......... 753 TGAGGCACAT CATCGGGACC TAAATCACTT TGCTTCGGTG AGATTTTTCT ACTTTTAATT 30045 .......... .......... .......... .......... .......... .......... 753 TTGTACGTTC GAATTTTTAT AGTATTAAAA AGAACTATTT GTGTTTTTTA AAAATTTAAA 29985 .......... .......... .......... .......... .......... .......... 753 TTTTTTTTTT GTTACACAGG ATATACAGTG TCAAGGGCAT GAGTTGAAGG GCTACCCTGC 29925 | | | || .......... .........G AGTAAAGGT. .......... .......... .......... 763 CCCAATTGGA TATCATTGAA GTGAAAACAA TATCTCCAAA AAAAAAAAAA ATACTGTCTA 29865 .......... .......... .......... .......... .......... .......... 763 TTCATTCATA TATAGATAAT TAATAGATAG TGTTGAATTT TTCCATTAAT TTGTTGTATA 29805 .......... .......... .......... .......... .......... .......... 763 TATTAATCTT GAGCTGTTTT TTTGCGTTGT ATGTAATTAT TAATTATGTG AGGATTATAA 29745 .......... .......... .......... .......... .......... .......... 763 AATTATATAA ATATAATTAT TTTTAAAATT GTAAAATATT ATAGTAACAA AGAATATACG 29685 .......... .......... .......... .......... .......... .......... 763 ATCTCATGAA TTGCTCCAAA ATATTGAAAT ATAGATTGGA TTATATTGAA TCTTATGTGT 29625 .......... .......... .......... .......... .......... .......... 763 CAATTTCTAC TTTATATTTC TATTAAAAAA ATTAATTTTG TATATCAAAA TCATACCCAA 29565 .......... .......... .......... .......... .......... .......... 763 AAAAAAAAAA CATGATTCCA TTCTTATTAG TGGCATATAG AGAAAAAAAA AGTGGCCTAT 29505 .......... .......... .......... .......... .......... .......... 763 ATAATTTTAA TAAAATTATA TGTATTAAAC TTAGATAATT TTAAATATAC GATAATTTTA 29445 .......... .......... .......... .......... .......... .......... 763 TTGATAAAAA CCTAAAAATC TACCTTATTA AATCAAGACC TGGCTTTGAT TCTTAATGTT 29385 .......... .......... .......... .......... .......... .......... 763 AAATTTTATT CTTTATGTGT ATATATTAAC ATATTTAGCA AATCTCATTT AAGAAGATGG 29325 .......... .......... .......... .......... .......... .......... 763 GTGTAAACAT TCTTATTATT ACTTTATAAG TTATTTAAAT AAATTTACAA CTCAAATAAA 29265 .......... .......... .......... .......... .......... .......... 763 ACAATACCAA ATAACTAGGA AAAGGAGTTT AATAGAAAAT ATCAATAATA ACAACAAACA 29205 .......... .......... .......... .......... .......... .......... 763 ATAGAATAAG AGAAAAAAAG TAAAAAAAGC AACACATAAT AATAATATTG AAGTCTAAGA 29145 ||| ||||||||| || .......... .......AAG CAAAAAAAGC AA........ .......... .......... 778 AAGTAGAAGA ATTAATAATA ATATTATAAG AAAAACTAGA TATTATGCAA TTATCTTTTA 29085 .......... .......... .......... .......... .......... .......... 778 CTTCTCACCT CCATATCCTC ATTAATGTTT TTATCTTTGG CCTATTTTTT TTAAAAAAAT 29025 .......... .......... .......... .......... .......... .......... 778 TGATTAAAAA ACCTATTGGT GACTTGTGCA ATGACGTGTC AGAATTATAG CCGTTT 28969 || |||| || ||| .......... .......... .......... .......... ..AAGTATAT CCCTTT 792 hqPGS_C08SLe0082C24.1-_SGN-U340386- (31624 31151) ******************************************************************************** EST sequence 36 +strand 756 n (File: SGN-U326156+) 1 CAAAATAAAC CAAAAAAAAG TNCTATTAAG TAAGGCTGTT TAAAATCGAA TCAAAATCGA 61 TAAGTTGAAT CGATAAAAAA GTTATTGGTT TATAGTATTG GGTTATTGGT TTAGTGATTT 121 TGATAATGGT TTTGATTTTT TTTTGTTATC GGGTTATCGA TTCTTAACGG TTTAAAGTTT 181 TTTTTTTTAA CGGATTAACC GATAACCCGA TAGTAAATTA AATATTTATA TTTATACCAT 241 TTTTGTATAT AAAGTTCTCG ACTTGGAGTT TAATTTCCTA CTTTTATTTT TGGTTGTCTC 301 AAACACTTGA TTATTCTACG ATGTAAAAGT GCTTGCTTTT GAGCAAGATG TAACTTGTGA 361 ACTCAAGTGC ATGGTTTATT TGGTTTGTCA CCTTGTTTCT ACGTGATTTT CAATATTTTT 421 TCTTTTGGGT CAAATCTTAA CGGTTAAACC GATAACCGAA CAGATAACGA TCAAAAATCG 481 ATAAACCAAT AACCGATAAG CCAATATCTT AATGGTTCTA TAATGGTTTA GCATCACTAC 541 AAACCGATAA CTAATAAGCC AACCCGATAA ACTTTAAAAT CGAACCGAAC CGGCCGATAC 601 ACAGCCCTAG TATGACTTGT GCTTGTTTTA CATTGTGGTG CCTCAGTAGG GAGGTGGCTC 661 CTTTCATCAA TTTATGATTT TCACTATCAA GTCCGTTTGG TACTTCTATC AGTCGTATAA 721 AGTTAGGAAG ACATGTCTCT TGGATCTATA ATATAT Predicted gene structure (within gDNA segment 34709 to 28063): Exon 1 33436 32883 ( 554 n); cDNA 34 611 ( 578 n); score: 0.798 Intron 1 32882 32174 ( 709 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 32173 32161 ( 13 n); cDNA 612 624 ( 13 n); score: 0.692 Intron 2 32160 29966 (2195 n); Pd: 0.116 (s: 0), Pa: 1.000 (s: 0) Exon 3 29965 29954 ( 12 n); cDNA 625 636 ( 12 n); score: 0.750 MATCH C08SLe0082C24.1- SGN-U326156+ 0.798 579 0.766 C PGS_C08SLe0082C24.1-_SGN-U326156+ (33436 32883,32173 32161,29965 29954) Alignment (genomic DNA sequence = upper lines): GGCTGTTCAA AATCGAATCG AAATTGATAA G-CGAACTGA TAAAAAAGTT ATTGGTTTAT 33378 ||||||| || ||||||||| |||| ||||| | ||| || |||||||||| |||||||||| GGCTGTTTAA AATCGAATCA AAATCGATAA GTTGAATCGA TAAAAAAGTT ATTGGTTTAT 93 ATTATTGGGT TATTGGTTTA GTGATTTTGA TGACGATTTT GA--TTTTTT TGTTATCTGG 33320 | |||||||| |||||||||| |||||||||| | | | |||| || |||||| ||||||| || AGTATTGGGT TATTGGTTTA GTGATTTTGA TAATGGTTTT GATTTTTTTT TGTTATCGGG 153 TTATCGGTTC TCAACTGTTT AAAG--TTTT TTCTTAACGG GTTAACAGAT AACCCGATAG 33262 |||||| ||| | ||| |||| |||| |||| || ||||||| ||||| ||| |||||||||| TTATCGATTC TTAACGGTTT AAAGTTTTTT TTTTTAACGG ATTAACCGAT AACCCGATAG 213 TAAATTAAAT AATAATATTT ATACCA-TTT TGTATATAAA GTCCTCGATT TAGAGTTTAA 33203 |||||||||| | | |||||| |||||| ||| |||||||||| || ||||| | | |||||||| TAAATTAAAT ATTTATATTT ATACCATTTT TGTATATAAA GTTCTCGACT TGGAGTTTAA 273 TTTCCTACTT TTATTTTTGG TTGTCTCAAA TACTTGATTA TTCTACAATG TAAAAGTGTT 33143 |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| |||||||| | TTTCCTACTT TTATTTTTGG TTGTCTCAAA CACTTGATTA TTCTACGATG TAAAAGTGCT 333 TGTTTTTTAG CAAGATGTAA CTTGTGAACT CAAGTGCATG ATTTATTTAG TTAGTCCCCT 33083 || |||| || |||||||||| |||||||||| |||||||||| ||||||| | || ||| ||| TGCTTTTGAG CAAGATGTAA CTTGTGAACT CAAGTGCATG GTTTATTTGG TTTGTCACCT 393 TGTTTCTAAT TGATTTTTAA TGTTTTTT-T TTT-G-TCAA ATCTTAACGA TTAAATCGAT 33026 |||||||| ||||||| || | |||||| | ||| | |||| ||||||||| ||||| |||| TGTTTCTACG TGATTTTCAA TATTTTTTCT TTTGGGTCAA ATCTTAACGG TTAAACCGAT 453 AACCGAAC-- ----CGAT-- --AA-CGAT- ---CAATAAC CGATAAACTA ATATCTTAAT 32981 |||||||| |||| || |||| ||||||| |||||| | | |||||||||| AACCGAACAG ATAACGATCA AAAATCGATA AACCAATAAC CGATAAGCCA ATATCTTAAT 513 GGTTCTATAA CGATTTAGCA TCTCTACAAA TCGATAACCA ATAAGCCAAC CCGATAAACT 32921 |||||||||| | ||||||| || ||||||| ||||||| | |||||||||| |||||||||| GGTTCTATAA TGGTTTAGCA TCACTACAAA CCGATAACTA ATAAGCCAAC CCGATAAACT 573 TCAAAACCAA ACCAAACCGG CCGATATACC ACCCTACTTC TCATATTAGT TCCTCCAAGA 32861 | |||| | | ||| |||||| |||||| || ||||| | TTAAAATCGA ACCGAACCGG CCGATACACA GCCCTAGT.. .......... .......... 611 AATTATGAAA ATTTCCATAA CTAAAAGTCA AAGTAAAATA AAAGTTGGCC ACCACCAAGA 32801 .......... .......... .......... .......... .......... .......... 611 AGCAATATCA CTCTCCCAAT ACTATGGAAA AGTCAATTCC AAACAACTTT CTCATACTCT 32741 .......... .......... .......... .......... .......... .......... 611 TTCATATATT ACATCATATT CCTCCACTTT TTTCAACTTA AACACTATAT ATAAACCAAC 32681 .......... .......... .......... .......... .......... .......... 611 AATTTTTCAC CATAAAAAAA CATCATCAAC ATTTCTTATT TTGTTAAATT TCAATCATTT 32621 .......... .......... .......... .......... .......... .......... 611 GAATATGAAT CGTAATGCAG CAATGAAAAT ATCTGGATTA CTTATGAGAC AATTACGGGG 32561 .......... .......... .......... .......... .......... .......... 611 CGAATTTTTG CCCCGTGGAG GCATGGTACA AATTCGTCAT TGGAGTAATA TGAATACTTC 32501 .......... .......... .......... .......... .......... .......... 611 TAGTAAAACA AAAGAAGAAC AAAAAACACA TAATCAACCA TCACACACTG ATGCAACCAA 32441 .......... .......... .......... .......... .......... .......... 611 CGCCGCCGGC GACAAGGCTA AGAAAATTGT TAGCTATTGG GGGGTGGATC CTCCCAAAAT 32381 .......... .......... .......... .......... .......... .......... 611 CTCCAAGGAA GATGGTACAC CATGGAAGTG GAACAGCTTC AGGGTACGTA CGCGAATAAT 32321 .......... .......... .......... .......... .......... .......... 611 ATATTCCCTT TATTCCGTTT TATATGATTG ACTTTCTTTT TTAGTCAGAA AGAATGACAT 32261 .......... .......... .......... .......... .......... .......... 611 ATTTTTGTAC TCTCTCTGAA ACGAGACAGA GGAAGTATGT TTCTAAATTA TGACTTACTT 32201 .......... .......... .......... .......... .......... .......... 611 ATAAGGCTAT AACTAAATCT CTTTTAGATA ACTTGATCGT GTAAAAATAT TTTATATTGA 32141 || ||||| | | .......... .......... .......ATG ACTTGTGCTT .......... .......... 624 TACTATATAT AACTTAAACT CATAATTTTA ATTATATATA TATATATATA TATATATATT 32081 .......... .......... .......... .......... .......... .......... 624 TTTTTTTTTT TTTTGGTTTT GACAGCCATG GGAGACGTAC TCAGCTGATA TTTCAATTGA 32021 .......... .......... .......... .......... .......... .......... 624 TGTGGAGAAG CACCATATGC CTACCAATTT TATGGACAAG TTTGCTTATT GGACAGTCCA 31961 .......... .......... .......... .......... .......... .......... 624 ATCTTTAAAG TACCCCACCT ACTTGTTTTT CCAGGTCAAC ATCTTGACTC TCTTATTATT 31901 .......... .......... .......... .......... .......... .......... 624 AAAAAAAATA ATTTTAGTTA AATGATTTTT TACTACTACT ATAAATTATT GCAACAAGAT 31841 .......... .......... .......... .......... .......... .......... 624 TTTTTCAATA TTAAATTAAA CTAAATAATG ATCCCAATAA TTAAATTAAA AAAAAAAAAA 31781 .......... .......... .......... .......... .......... .......... 624 AGACAACGTG ATCTTACCGC ACTAGTTGGA GAAAATGACA AAATGGTATC GGCGCGATAT 31721 .......... .......... .......... .......... .......... .......... 624 GTTTAAAATA CTCCTTTACA TATATTGTTT AATAATAAAT TAAAAAAGAG CATCTTTGGT 31661 .......... .......... .......... .......... .......... .......... 624 TTTCATTTAA AAAATTTAAC AAACTATCTC AGATATATTT ACACTATATC TGGATCATTG 31601 .......... .......... .......... .......... .......... .......... 624 TTATCTACTG TATTGTACAG TAACATTATT ATACTTACAA TATTTGTTTG GATTATTACT 31541 .......... .......... .......... .......... .......... .......... 624 TAAAATGTAT TGTATTGTAT TATAAAATTT GGTTGTTAAG TAATAATGAA AACCACTATT 31481 .......... .......... .......... .......... .......... .......... 624 TTATAGAACA TTCAATTTGG TGTGTTCCCA TTGTTACTTA ATATCCTTTT TCAATTATAT 31421 .......... .......... .......... .......... .......... .......... 624 ATTTACATAA TATTTTAAAA TACTATTTTA CCCTTTATCT TAATTATTTG AATCTACTAA 31361 .......... .......... .......... .......... .......... .......... 624 AACCTCCTAC CATAGAATAA TTAGGATATT TTAGTAAATT TATAAATTAC AATACAGTAC 31301 .......... .......... .......... .......... .......... .......... 624 GTACTATCAA ACCAAACAAT TAAAATGTTA TTAAACAACA ACATACAATA CAGTCTAGCC 31241 .......... .......... .......... .......... .......... .......... 624 AAACATTGTA TCTACCATAC AATACAGTAC AATAGAGTAC AATACAATAC AATACATTAT 31181 .......... .......... .......... .......... .......... .......... 624 GAAACAATCG GTAACAATGA TCCAAACAAA GTGTTAAAAG GGAATTTTGT TTCAAAAAAA 31121 .......... .......... .......... .......... .......... .......... 624 TCGATTTAAA GTCATATCAC AAAAATATTT ATAGATTAAT ACGAATGAAA AATTAAAATT 31061 .......... .......... .......... .......... .......... .......... 624 TAAACGCTCA AAAATATCGT AATTCATAAT GAGGTTATAT GTACGATTTC CTAGCTCGTC 31001 .......... .......... .......... .......... .......... .......... 624 GTAGAGAATC TCTTAAAGTT ATTTAAAAAA ATCGACCAGG GGATAAAATA TAACTAGAAA 30941 .......... .......... .......... .......... .......... .......... 624 TTTGTTAAGA AAGTCCCATA AAATTGTAAC AATTGCTATA TAAAAGAAAT TCCATTACAC 30881 .......... .......... .......... .......... .......... .......... 624 ATCAAAAATA AATAAACAAG ATTAGAAATT CGGAGTCTAA AAAAAAATAG TATAATTGTA 30821 .......... .......... .......... .......... .......... .......... 624 GAAATTAGAC CTCTAAATAT AAATTCCTTC AGAAACTCTT TTTCCCTCTC ATAAGTTTCT 30761 .......... .......... .......... .......... .......... .......... 624 ATCAAATCTA ATTAATATAT ATTCATTTAA ATGATTGAAC AAAAATTGTT CATACTCAAT 30701 .......... .......... .......... .......... .......... .......... 624 TTTAGTGAAC TTATTTAAAA GACCAAAATT AATGAAAAGT ATATTGAAAC TCCAAAAAAA 30641 .......... .......... .......... .......... .......... .......... 624 CACAAGGGAC CATTACCTAC TATAACCCTA TACATTATTA TAACGTTTAA TTTATATACA 30581 .......... .......... .......... .......... .......... .......... 624 CTAACAGTAT ATTTAATTTC GCAGAGACGT CACATGTGTC ATGCTATGTT ACTAGAAACG 30521 .......... .......... .......... .......... .......... .......... 624 GTTGCAGCCG TGCCAGGCAT GGTAGGTGGT ATGCTCCTCC ACTGTAAATC CCTCCGTCGA 30461 .......... .......... .......... .......... .......... .......... 624 TTCGAGCACA GTGGTGGTTG GATCAAAGCC CTCCTCGAAG AAGCAGAGAA CGAACGGATG 30401 .......... .......... .......... .......... .......... .......... 624 CATCTCATGA CCTTTATCGA ATTATCAAAT CCGAAATGGT ACGAACGTGC ATTAGTCTTT 30341 .......... .......... .......... .......... .......... .......... 624 GCAGTTCAAG GCGTATTTGT CAATGCCTAT TTCATTGCCT ATTTAGCGTC CCCAAAATTG 30281 .......... .......... .......... .......... .......... .......... 624 GCTCATCGAA TTGTTGGTTA CTTAGAAGAA GAAGCAGTAA ATTCGTATAC AGAGTTTTTG 30221 .......... .......... .......... .......... .......... .......... 624 ATCGATATAG AAAAGGGACT TTTCGAGAAC TCGCCTGCAC CGGCTATTGC TATTGATTAT 30161 .......... .......... .......... .......... .......... .......... 624 TGGCGTTTGC CGGCCGATGC AACGCTAAAA GATGTTGTTA CTGTTATTAG GGCCGATGAG 30101 .......... .......... .......... .......... .......... .......... 624 GCACATCATC GGGACCTAAA TCACTTTGCT TCGGTGAGAT TTTTCTACTT TTAATTTTGT 30041 .......... .......... .......... .......... .......... .......... 624 ACGTTCGAAT TTTTATAGTA TTAAAAAGAA CTATTTGTGT TTTTTAAAAA TTTAAATTTT 29981 .......... .......... .......... .......... .......... .......... 624 TTTTTTGTTA CACAGGATAT ACAGTGT 29954 | | | ||| ||| .......... .....GTTTT ACATTGT 636 hqPGS_C08SLe0082C24.1-_SGN-U326156+ (33436 32883) ******************************************************************************** EST sequence 27 +strand 1140 n (File: SGN-U324134+) 1 AATCAAAAAA CAATGTTATG TGCATCATGA ACCATGCCTA TTTTAAACCA GCTGCTTGGC 61 ATGTTTGCAT TCTAAACAGA TTTATTTATT TTAATTTTTG AAAAAAGTAT ATTCCATTGA 121 TAATGTGAAA TTCGTTATCA TCCCATATGC CTAGTTAACT TGTGCATTTT TTATAGATTA 181 ATTTAAAATA TAAAATTTAT GATTTAAAAT TTTTATTCAT AAATATAAAA TTATGAATTT 241 ATATTATTTA TAAATTTCTT AAATATAAAA TTTAGCTAAA ATTATATATA TTTCCTTTCT 301 CTGCCCAAAA AAGAAATACA TTTCAAATTT ATAATTGAAA TGGCCCATTT CAAACTTTCA 361 ACCATTTTTA ACTTTTATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 421 ATTACTTTAA TAACTATATA TAAGATGCTA GGAAAGCAAT TATTCGTCAA CGTTCCAACT 481 TTTCTAGGCG GGGGTAATAT AGTAATTTAC TAAATGTTGT GTAAAGGTAT TATTGTACTT 541 ATTTGCTTCG TTGTTGAGCT TTTTTATTTA TTGAACATAT AAGTCCAATA ATTGATGGAG 601 CCATATCATT GGATGGTGGG ATCATAAAGA GTCCTGACAT ATTTTCCCTA GGCAAAAGGG 661 AAGTACAAAT CAAATTTCCA AAGAGTTCTG GAAGGTTGTA TCTACGTGAA AGCTATTTTG 721 GAAGTGAGAT CCAGATGAAG GAGCTGAAGT GAGAAAGGGT AAGATGTGTG GAAGATTTAG 781 AGAGAGAGCA AACATTGCTG ACCAATGCAA AGAACAACTT TGAAATAAGG AAAGAGGAGT 841 TTTTCAAGTT TCTTTCACAG AGCTCATCCT ATCTCTGAGG GTTATATACT TGAGTAGGGC 901 TGTTCAAAAC CGAATCTAAA CCGATAAGCC GAACCGATAA AAAAGTTATT GGTTTATATC 961 ATTGGGTTAT TGGTTTAGTG GTTTTGATGT CGGTTTTGAT TTTTTTTGTT ATCGGGTATC 1021 GGTTCTTAAC GGTTTAAAGT TTTTTCTTAA TGGGTTAACC GATAACCTGA TAGTAAATTA 1081 AATAATAATA TTTATACCAT TTTGTATATA AAGTTTTCGA CTTAGAGTTT AAAAAAAAAA Predicted gene structure (within gDNA segment 43349 to 32351): Exon 1 42710 42677 ( 34 n); cDNA 748 780 ( 33 n); score: 0.559 Intron 1 42676 39130 (3547 n); Pd: 0.542 (s: 0), Pa: 0.964 (s: 0.59) Exon 2 39129 39085 ( 45 n); cDNA 781 823 ( 43 n); score: 0.589 Intron 2 39084 37191 (1894 n); Pd: 0.277 (s: 0.59), Pa: 0.000 (s: 0) Exon 3 37190 37165 ( 26 n); cDNA 824 848 ( 25 n); score: 0.615 Intron 3 37164 36371 ( 794 n); Pd: 0.809 (s: 0), Pa: 0.699 (s: 0.53) Exon 4 36370 36324 ( 47 n); cDNA 849 894 ( 46 n); score: 0.532 Intron 4 36323 33440 (2884 n); Pd: 0.488 (s: 0.53), Pa: 0.000 (s: 0.85) Exon 5 33439 33203 ( 237 n); cDNA 895 1132 ( 238 n); score: 0.899 MATCH C08SLe0082C24.1- SGN-U324134+ 0.899 389 0.341 C PGS_C08SLe0082C24.1-_SGN-U324134+ (42710 42677,39129 39085,37190 37165,36370 36324,33439 33203) Alignment (genomic DNA sequence = upper lines): AGCGACAGTT CCTCTTGATG TGAGGAAATC TTATGTAAGT GGATGAGCAT TAGCTAATAT 42651 || || | | |||| || |||| ||| AGTGAGAAAG GGT-AAGATG TGTGGAAGAT TTAG...... .......... .......... 780 TACTTTTTTA AAAAATATAT AATTAGTTGT GAATATAACG ATATGATAAC TTGTTTATTT 42591 .......... .......... .......... .......... .......... .......... 780 TTGTGAATAT TTGTTAATTA TCGTGAATTC AATCTATTAT TTCTAATTTT AACAAATATG 42531 .......... .......... .......... .......... .......... .......... 780 AAAAGCCAAG GGCTTGATCA GGCCATTTCC AGAAATATTT TCATAATACG AGTGGCTATC 42471 .......... .......... .......... .......... .......... .......... 780 TTTAACATTC AATTCATTCA TCAGTCTCTA AAGTATTCTT TACTTGCTTA ATTTGTAGGA 42411 .......... .......... .......... .......... .......... .......... 780 TATACATTTC AGAACTGATG TTTTGACTCC TAGTGTCATC TAAGTAACAC ATTTCATGAC 42351 .......... .......... .......... .......... .......... .......... 780 ATCTGAAATG TAATTTCTAC AAATAAAGCA AGTAAAGAAC ACTTGAGAGA CTGGTGGAAG 42291 .......... .......... .......... .......... .......... .......... 780 AACTAAATGT TAAAGATAGT CACTCGTATA ACGAAAATAT TTCTGGAAAT GGTCTAATCA 42231 .......... .......... .......... .......... .......... .......... 780 AGTCCTTGTT CATATATGTT AAAATTGGAA ATAACAGATT GAGTTCACTA TAATTAACAA 42171 .......... .......... .......... .......... .......... .......... 780 ATATTCACTA AAATAAACAA GTTGTCAGAT CACTATATAT ACAACCAATT ATATATAAAG 42111 .......... .......... .......... .......... .......... .......... 780 AAAGTAATAT TAGTTAATGA GCATCCACTT GCGTCAAATA TTCTCACATC AAGAGGAATT 42051 .......... .......... .......... .......... .......... .......... 780 GTCGCTATAA GAATCTGCAA ACACAAATAA TCAAATAATA TATTCGCCGA CGGAGGGTAT 41991 .......... .......... .......... .......... .......... .......... 780 TAGCAACAGA GTGATTAATG AACCCTAATT GAATGAATTG TTATAATTTA TTACCAGTAG 41931 .......... .......... .......... .......... .......... .......... 780 AGGATGATCC TGCTTACATT CATGTACCTA CTCTTTGCAT ATTCCAATTA TATAAACCTG 41871 .......... .......... .......... .......... .......... .......... 780 ATTTTTCGCA TAGTTTCCTC CATCGAAGCC ACTTGTATTG AAATGTGTTA AATATGTTGT 41811 .......... .......... .......... .......... .......... .......... 780 GATTATCATG TTGATGTATA TACCATAAAT TGTCATAAAC CATAGTTAAA ATAAAATAAA 41751 .......... .......... .......... .......... .......... .......... 780 CAATAATGAA TAAATAAATT TTAGGTTGAG GTGTGTATAT CTCACCCTCT TTAAAGATAT 41691 .......... .......... .......... .......... .......... .......... 780 TCAAGATCAT TGTGGTATAT TATACATCTA TATCAATTCA ATAGTATAAC TCTTAACTTG 41631 .......... .......... .......... .......... .......... .......... 780 TCCCTTTTAG GATACAATAA CCCAACAACG TCATATAACT CAAACAAGTT GAATTAGTTG 41571 .......... .......... .......... .......... .......... .......... 780 AAGAATGCAA AAGTAATATA CCAAAAAAAT ATTTTTCCTT ATTTCAGTTA TCTCTTTCAC 41511 .......... .......... .......... .......... .......... .......... 780 ACACTAACCT CAAGATAACA CAATAATACT TCTCACTTTG TTCTCATTTT TTTTTACAAC 41451 .......... .......... .......... .......... .......... .......... 780 ACAATAAAGA AATATATACA TTCTTTACGG CATCTTCAAC TCAATCCTCT ATTTAACTCT 41391 .......... .......... .......... .......... .......... .......... 780 CAAAATAGAG TTCTCTATTT TTTCGAACAA TCAACTCCAA CCCAATTCTC TATTTACTCT 41331 .......... .......... .......... .......... .......... .......... 780 CTAAAACGAA ATCTTTTTTT CTCTCCTCAA TATTATATTA TTATTTTTAT TTCATTCTTA 41271 .......... .......... .......... .......... .......... .......... 780 TTTTCTTATT TCATAATATA AATTCTTTAT TTCTTTTTTC TCATATAATT ACTTTATATA 41211 .......... .......... .......... .......... .......... .......... 780 GTTTTTAATA TGATATAAGA TTGTATTTTA TTTTAAATTT TTAAATAACA TAAATTACAA 41151 .......... .......... .......... .......... .......... .......... 780 GAAAATATAA TGTAATACAT AAATTAGGGG ACATATTCAA ATAAAAGTGA CATACAATTA 41091 .......... .......... .......... .......... .......... .......... 780 TATAAACACT CAATTTTAAA AATCACTATG TTGCTCCTGT AAATGCTCTA TTAATGCATT 41031 .......... .......... .......... .......... .......... .......... 780 ACAGAGATTA AAATGAGCAT TTTTGTACAA ATATTTGTGA CTACCTGCAA CGAGAACAAC 40971 .......... .......... .......... .......... .......... .......... 780 AAGGAATACT TGAAAAAGAA ATCTACAATC ACAACCGCAG TCACAAACGC AATCACGACC 40911 .......... .......... .......... .......... .......... .......... 780 ACGATCGCAA TAATTCTCAA AATCGTATGG TATTTTTTTT CCGAATAGTG CTAGATCTGG 40851 .......... .......... .......... .......... .......... .......... 780 AACAGACCAA CCGGATTATT ATGTTATGTA TTATATTTTA TCTTGTATTT AAATTATTAT 40791 .......... .......... .......... .......... .......... .......... 780 ATTAAGTAAT GTATTGTATT GTTATCTTGT ATTATTTATG TATTGTATTG TTATCTTGTA 40731 .......... .......... .......... .......... .......... .......... 780 TTTAAATTAT CATATCATGT ATTGTATTTT TAAATTAAAT TTTTCATCTT GCCATTTTAT 40671 .......... .......... .......... .......... .......... .......... 780 TTTTGTGTAT TCTTTATAAT GAAAATTAAT AAATTTTATT ATTGATGAAA ATTAAAAAAG 40611 .......... .......... .......... .......... .......... .......... 780 AAAAATTAAA ATTTATTAGT TTGAAATTAA AGTAGTATAT ATTTAAAAAT ATTTTTTAAA 40551 .......... .......... .......... .......... .......... .......... 780 ATATTATATT ACATTAAAAG AAATATGAAT ATTAGAGATT TAATTAATGA AATTATATGT 40491 .......... .......... .......... .......... .......... .......... 780 AAATAATATG TTAATTAGAA AGTAATAGAA TAATAATAAA ATGCTAAAAA AGTGAATAGA 40431 .......... .......... .......... .......... .......... .......... 780 GAATAGAGCG TGATTTGAAG ATATGTTAGA GTGTCTGTTG TCTATTTTAC TGTCCAAATA 40371 .......... .......... .......... .......... .......... .......... 780 TAATGAATGA AGAGTAAAGT AAAGATGGGT TGGAGATGAT CTCGTATAAA TGTACGTAAG 40311 .......... .......... .......... .......... .......... .......... 780 ATTTCTTTTA CAAATAAATG TCATGAATGT GGATCGTCAT TTGTAAAACA ATTAGTAAGA 40251 .......... .......... .......... .......... .......... .......... 780 AATAATAAGA ACATGTCATT ATGATTATAT GAGTTATAAA AATCATATAT ATGATATCGT 40191 .......... .......... .......... .......... .......... .......... 780 TTTCTCCACC TTAAACGTAC TCACTATGAT GCACTTAATA TTTTGGATAA ATGATAGAAA 40131 .......... .......... .......... .......... .......... .......... 780 TCACATACTT TTAAGGTAAA ATATCATTTG TCCTTTAAAA GTTTATAATT ATAGAAATCC 40071 .......... .......... .......... .......... .......... .......... 780 TACAAACTGA TACATTAATT TGATGTGCGA GATACATAAT CGTTAAGTAA GATATTACAT 40011 .......... .......... .......... .......... .......... .......... 780 TTTATACATG ATACACTAAT CTGATGTAAA TTTTATACAT GATACACTAA TTTGATGCGT 39951 .......... .......... .......... .......... .......... .......... 780 GAGATAGATT AATTTGATGT GCGAGATACA TTCATTTGAT GCGCTGATAC ATTAATTTCA 39891 .......... .......... .......... .......... .......... .......... 780 TGTGTGAAAA TTAGAAATTT TAGAAATTTG TAAAACTATT AAGTGATAAT GATAATAAAA 39831 .......... .......... .......... .......... .......... .......... 780 ATATTTAGAG ATACGATTTC TATCATTTTT TCTAATATTT TTGTTTTTAA TATTAAAATG 39771 .......... .......... .......... .......... .......... .......... 780 CACGATATCA CACCATCATC ATGATAGTGA ATAAGACGGA TTTCTTAGAT GTTATTTCCT 39711 .......... .......... .......... .......... .......... .......... 780 TTTTGAGGGA TGTTGATTAG TATGTTTGAA TATTCACAAT TGCCTTTAAA AAAACAAATT 39651 .......... .......... .......... .......... .......... .......... 780 TAAAAATAAT ATTTGCAATT GCCTACCTAA GCAAAATCAT TTTTAAAAAA ATAATAATAA 39591 .......... .......... .......... .......... .......... .......... 780 TCAAGTTTTG CATTAACAAA GTAATTAAGT AAAATTAAGA CACATTCCTG ATTTAAGAGA 39531 .......... .......... .......... .......... .......... .......... 780 TGCTTATTAG GAGCAGGTTG GGTATGAGGT GATTGAGCTT AACCCTCAAA CTTTTGATTT 39471 .......... .......... .......... .......... .......... .......... 780 GCCTAGCGTA GGGGTATCAA ATGGGTGATT TGGGTTATTA AAAGGGAAAA TTATATATAA 39411 .......... .......... .......... .......... .......... .......... 780 TAGCAAACTA ATAAGCTAAA TTAAATGGAA TAGCCAGGGT TTGATTTATT TGTGCTCCAT 39351 .......... .......... .......... .......... .......... .......... 780 AGCAAACATT AGCTAAAATT TGCCAGCGTC TCTCACCCAA AAATCTCGCT CGCCACTCTC 39291 .......... .......... .......... .......... .......... .......... 780 CATTCTCGCT CGCCTCTCTC GCTTTATACA CAGAAGTGTA TAATTCTGTT TCTGTTTTGT 39231 .......... .......... .......... .......... .......... .......... 780 ATAAAGCAAG AGAAAATTGT ATATACACAT GCAAAAATGT ATATCTTCGT GTTATACACT 39171 .......... .......... .......... .......... .......... .......... 780 TAATTATACA ATTTACAAAC ATTTTACTTC AAATATTGCA GAGAAAAGGC CAACGAATTA 39111 ||| | || ||| | | .......... .......... .......... .......... .AGAGAGAGC AAAC-ATTGC 798 T-ACAATTGC GAATTAACAA TTTTAGTGTA ATACAATTTT CTCTAGCTTT ATACAACAGA 39052 | || | ||| || ||||| ||| | TGACCAATGC -AAAGAACAA CTTT-GA... .......... .......... .......... 823 AGTGTATATA TTGTGTTTCT GTTTTTGTAT AAAGCGAGAA AAACATATAT CTTCTTGCTA 38992 .......... .......... .......... .......... .......... .......... 823 TACACTTATA ATTATGCAAT ATACATACAT TTTAATTCAA TTCAACTATA TGCAAAACAA 38932 .......... .......... .......... .......... .......... .......... 823 ATTATACAAT TGCAGCGAAA TAGGCCAGCG AATTATACAA TTTAGGTCAG CGAATTACAC 38872 .......... .......... .......... .......... .......... .......... 823 AATTGTATAT GTATAGCAAA TTATACAGTT TTATGTTTGC TATGGAGCGC AATTACGCAA 38812 .......... .......... .......... .......... .......... .......... 823 AGTTTGTTAT AGCATACAAA TATGAATTTT TTGTTTGTTA TATGTGAAAG TTGCCCTTAT 38752 .......... .......... .......... .......... .......... .......... 823 TAAAATGGGT TGAAATAGAA GTCGGGTTGG GTCTTGACCA ATTCAAGTTT ACTCTGGGCT 38692 .......... .......... .......... .......... .......... .......... 823 CAAATGGGCT AAAAACGGGT TGGATCTTGA CTCACCTAAT TTGACCGGAT TAATCTAAAA 38632 .......... .......... .......... .......... .......... .......... 823 AAATTCAACA TATTGATATT CAACTTTTAT AATCACAATT TAAAATTTAG CTCGAGAATT 38572 .......... .......... .......... .......... .......... .......... 823 TTTTTATAAA AAAAAGTAAC AAATGGATAG ATAAATCTTA AAAGTTGTTA AATAGATAAT 38512 .......... .......... .......... .......... .......... .......... 823 AATTCATACC TTACATATAG GATGATATCT TAATAAAAAG TTTTAAAGCG GGTCGAAATT 38452 .......... .......... .......... .......... .......... .......... 823 GGAGATTGAA TTAGGCTTAT TTGAGGATTC CCTTTAAATG AGTAATCCTT GAATGTGTTG 38392 .......... .......... .......... .......... .......... .......... 823 AGATTAAACC TAATTTAAAT TATTTTAAGT CAATCCTTAA AATTTTGGGC GAGTTGGACG 38332 .......... .......... .......... .......... .......... .......... 823 GGTTACCTAT GTTTGGGTTC ATTTTGACAT CCCTAATCCA GCGTGACAAA TTTCTTTATT 38272 .......... .......... .......... .......... .......... .......... 823 AATCCGTCCC ACTTTGCTTC TCCCTGCATA ATTTTTATAA TATTTTCTTT TCTTATTTAA 38212 .......... .......... .......... .......... .......... .......... 823 ATTTGATACT AAAATAAATT CATTTTTTCA TAAACTTATA TTAATTTAAT AAATAATGAC 38152 .......... .......... .......... .......... .......... .......... 823 TTAAAATTTT ATTTTTTGAG GTCAATTAGG ATACATGTAA GAAATCGTTT TTTAATGAAG 38092 .......... .......... .......... .......... .......... .......... 823 TATTTTCATT TATTATCTTA AATATTTTAG TAGCTTTAAA GAAATTATCT TAATAAATAA 38032 .......... .......... .......... .......... .......... .......... 823 TGTTTTATCA TTGTTATATT CCCTCCCATT TTAAAAAGAA TGTCCCTATT TTCTTTTTAG 37972 .......... .......... .......... .......... .......... .......... 823 TTTGTTTCGA AAACAATGAC CCTTTTTTTT TGGCAACACT TTAACTTTAA CTTTCCACAT 37912 .......... .......... .......... .......... .......... .......... 823 AACATGTTTA AGATTACAAG ATTAAAGAGC ATTTTGGTAC ATTACTTTAA TTTAGAATGA 37852 .......... .......... .......... .......... .......... .......... 823 TAGATTAAAA AGTCTTTTTT TTTCTTATAT TTCGTTCCAA GTCAAACTAG ATTTTCCTTT 37792 .......... .......... .......... .......... .......... .......... 823 TTGAAACCGA GCAAATAACG TGTTAAAAGT TAAAATCAAA TTTGAACCAT CATAAAATCA 37732 .......... .......... .......... .......... .......... .......... 823 GATATACGTG CAATCCACTC CACCCCACCC TATTGTCATC CCAATTTTCA ACTAAGAATT 37672 .......... .......... .......... .......... .......... .......... 823 TGATGATTTA GAAATACAAA CAATGATATA TAGTTGACTG CATTTAAAAA ATGTGAAATT 37612 .......... .......... .......... .......... .......... .......... 823 CGTGATTAAC ATATATCGTC AGTGAAATTT TTCTCTTCGA TACACTTGTT AAATAAAACA 37552 .......... .......... .......... .......... .......... .......... 823 AATCTTATTT TAATATCTAT AATATTGAAC TTCAGTATAT ATATGCAAAT ATTGGTCTAT 37492 .......... .......... .......... .......... .......... .......... 823 TCCTTTTCTT CTCTTCATTC ACTCAAATGT TTAGAACCTT CTGCTAACTT TATTTATAAC 37432 .......... .......... .......... .......... .......... .......... 823 CAATATATAT GTCCACATAC AACAACTAAA TTTTAATTTT TTTAATTATT CCTTTTTTTT 37372 .......... .......... .......... .......... .......... .......... 823 TTTTTGAATG CAATCAAATA ATGGTTCAAA CATACGAATT TTCCAAGGAA AAAAAAAGTC 37312 .......... .......... .......... .......... .......... .......... 823 CCAACATACT TTCATTTAAA AAATACGCGT TAGTGAAAAA TTGAAAAATA ATAATTTGTA 37252 .......... .......... .......... .......... .......... .......... 823 ATTTTTTCTT ATATAATTAT GAAGACTTGA AAATGACTAT TTATGATTTA TATTTTGGGA 37192 .......... .......... .......... .......... .......... .......... 823 AAATGACAGA AATCAAATAT TTTTAAGGTA AAATTATTAT TTGTCCCTTA TAATTTTATA 37132 ||| | || || | | ||| ||| .AAT-AAGGA AAGAGGAGTT TTTCAAG... .......... .......... .......... 848 ATTACAGAAA TTCCTCAAAC TGATACAATA ATATAAGTGT TGATACATTA ATTTGATACA 37072 .......... .......... .......... .......... .......... .......... 848 CGAGATATAT TAATTATTAA GTAAGATACA TTATATTTTA TACATGATAC ACTAATATAA 37012 .......... .......... .......... .......... .......... .......... 848 TGTACATTTC ATTCACGATA CATTAATCTG ATACACGAAA ATATTAATTT AATGCATTGA 36952 .......... .......... .......... .......... .......... .......... 848 TACATTAATC TGATGCATAA AAATATAAAA ATTTAAAAAT TTATAAAAGA ATAATATTAA 36892 .......... .......... .......... .......... .......... .......... 848 TAATAAAAAA ATTAAAAATG AAATTTTTGT CATTTTTAGT TTTTTTTTCT TCTCAAAACT 36832 .......... .......... .......... .......... .......... .......... 848 TGACGTGCCT CCAAAGGATT TTTTGGACTA TGCAAGGCCC ACATATACGT GTGAATATCA 36772 .......... .......... .......... .......... .......... .......... 848 CCTTAGGATA TATTCTCCTA TATTCTTCCG TGTCAAAATT AAACTCTATG GTCCAAAATC 36712 .......... .......... .......... .......... .......... .......... 848 AAATACCCCA TCAAAATAAT TAAGAGAATT AATAACTTAC ATACACTCAA ATTTTATTAG 36652 .......... .......... .......... .......... .......... .......... 848 ATTTAGGTAT GTTTATATAC GTCCAAATAC ATGTACCTTA GAATATATAA GTTAAGTTTG 36592 .......... .......... .......... .......... .......... .......... 848 TTTTAGATAA ATTGTATTCA AGTGAATTTA TATGTATTTT TAATATATAA TAGATCTCAA 36532 .......... .......... .......... .......... .......... .......... 848 TAGATATTTT CTTATGTATC TAATATTTCA GATACATGCG AATCATACAT AATATTTTAA 36472 .......... .......... .......... .......... .......... .......... 848 AAATATGAAT ATAATAATAT TTATTAGTGA AGTATATTTA ATTATGTAAA TTTTCTCCTA 36412 .......... .......... .......... .......... .......... .......... 848 AAATAATATA TATGATTAGT AAAATAAATT TTATTACGTA GTTTCTCCCG AAGAGTCTGT 36352 ||||| | |||| | .......... .......... .......... .......... .TTTCTTTCA CAGAGCTCAT 867 CCAGTCTCCG CTCCAAAATA AATATGTGGT TTTACTGCAT TTTGTGTCTA TCGTGAAAAA 36292 || |||| | ||| | || | CCTATCTCTG -AGGGTTATA TACTTGAG.. .......... .......... .......... 894 ATAATAAAAA TATATCTCAT ACTTTTCTTT TATAATTACT TTAAAAAAGA ATGACACATA 36232 .......... .......... .......... .......... .......... .......... 894 AATTTATTAT CCACAAATAT TTAATTATAC ATTAACATTT CAGTCACAAT GGGTCGTATA 36172 .......... .......... .......... .......... .......... .......... 894 TATTTGACAA AAAAATTTTT AAGATGTACT CCTTTATTTA AAAATTTATT TATGAATATG 36112 .......... .......... .......... .......... .......... .......... 894 TGTAGTTTTG AAATATTGCA CCGTCTTTTC ATATTACTTA AATTTTATAT CTAGTCAAAT 36052 .......... .......... .......... .......... .......... .......... 894 TATATAATTG AGATGGAGAA ATACTAAATT ATCTCTATTA ATTTATTAGA TGTTCTTTTA 35992 .......... .......... .......... .......... .......... .......... 894 GTATTAAATA ATATTACAAA AGAATAGTTA AACTTTATTA TTTATATAAG AATATACTTG 35932 .......... .......... .......... .......... .......... .......... 894 AAAATAATTA CTATTCTAAT TTCGCTTCTA TATTTTTTTT CACACTCATA AAGTCATAAA 35872 .......... .......... .......... .......... .......... .......... 894 CTCAACATTT ACCATCTCAT CATCTTGGTG AATACTTACC GTACTGTTTT TTAATCAAGA 35812 .......... .......... .......... .......... .......... .......... 894 TATAATTTAT CGTAGTTAAA TAATTTTTAA AAAATTTAGA GAAAATGGTG TAAAGTCCTT 35752 .......... .......... .......... .......... .......... .......... 894 CTAAACTATA CCTGAAATTT CAACTAGACA CTCCAATTTC ACGGTTATTA CCCTCTTGAA 35692 .......... .......... .......... .......... .......... .......... 894 CTGTTTAAAA CTGATATAAA TTTACTCTCT AAATGATTAT GTAGAAACAG TGAATATATC 35632 .......... .......... .......... .......... .......... .......... 894 TCACTCTCTT AAAGAGAGTG AGGACCAAAA CAAATAATAA ATTTTATTTT CAAAACTTTC 35572 .......... .......... .......... .......... .......... .......... 894 TTTTCATAAA TATGTGTATT TCTAATTATT CTTTTTTCTT ATTTATTTCC TTTCTTCTTC 35512 .......... .......... .......... .......... .......... .......... 894 ACAACAACAT AAACTAAATC TCTCGTATCA CTCACCTTCT CTAAATTTGG ATCCACCATG 35452 .......... .......... .......... .......... .......... .......... 894 GAATTTCATT ATTCTTCTTG ATTCTAGAAT TTGTTTTCAA TTTGTGCACG AAATTGAAAT 35392 .......... .......... .......... .......... .......... .......... 894 TTTTTGAAAA TCAATTCCTT ATTAATATTA TTAAAATTTA TAATCATCAT GTCTAACCAC 35332 .......... .......... .......... .......... .......... .......... 894 ATGGCCAAAT GGATTAGCAA ATTCTTATCT TGATTTTTTT GTGCTTAGTT TAATAATTTA 35272 .......... .......... .......... .......... .......... .......... 894 AATTCAAGTT CAGAAAGAAT TTTGGATTGT CAACGAAACC CATGTGTGAT TTTGAAAATA 35212 .......... .......... .......... .......... .......... .......... 894 GAAATGAAAA GATCCATTGT TATGTATCCA TTACCTCAAT TTGAAGAATT CAACAAATTC 35152 .......... .......... .......... .......... .......... .......... 894 ATCCATGAAA ATAACTTGAG TATCAATCAA ATAGTAGATG AAACAGTTAG AACTAAAATT 35092 .......... .......... .......... .......... .......... .......... 894 TTTACTAAAT TTTACCTTTC AAATTGAAAA ACTTTTGATG TTTGCAAGAA GATGAAAATG 35032 .......... .......... .......... .......... .......... .......... 894 GTGGGAAAAA GATTATTCAA TTGCAAAAAA TGAAAGATTA TCAAATATTT ATAACTTTAC 34972 .......... .......... .......... .......... .......... .......... 894 CTTTTAACAA TAAAACTTGA AATTTCATAA CTGTACATTC CATAAAGGTA AGTTTAAAAC 34912 .......... .......... .......... .......... .......... .......... 894 TAGCATAAAT AAAAAACTTA GAAATTTTCT CTTCAATGGC AAAAAACGGA AAAAGAAAAA 34852 .......... .......... .......... .......... .......... .......... 894 GAAAAGAAGA AAATAGCTGG AAATAGAAAG AAAAAAATAT AAAAGAAAAA TAAAACAAAG 34792 .......... .......... .......... .......... .......... .......... 894 AAAGACATCA TAAATTTTTT ATTAAAAATT AATATATATG ACGTGGCAGG CAAGTGTGTT 34732 .......... .......... .......... .......... .......... .......... 894 CACTCTCTAA CAAAAATCTG AGTGTGACCT TTTAGGAGGC TATATATTTC ATTTTTAAAA 34672 .......... .......... .......... .......... .......... .......... 894 TGTTTTGAGG AGTATTAAGT ACCCCGCAAT GTATGAGTAT GTAGTTGAAA ATCCAGGAAT 34612 .......... .......... .......... .......... .......... .......... 894 AGATTAACGG GTTTGACTCT TTTCTCAAAA AACTATGATA AAGTATAGCT ATGTATATTT 34552 .......... .......... .......... .......... .......... .......... 894 AAATACATAC TATTATGTAT CAATTTATTT GATGTAAACA TTGTAAGTTT TTACTTACTT 34492 .......... .......... .......... .......... .......... .......... 894 TCTCCATTTC TATTTACTTG TCCAATTTTG ACTGAGCACA TTTATTAAGA AAATAATAAT 34432 .......... .......... .......... .......... .......... .......... 894 TAACATAGTG AATTTATCAT TTTATTTTTA TAATTAAATA GATAGAATTT CAAGTCAATT 34372 .......... .......... .......... .......... .......... .......... 894 TACTCATTAA AGATATTCTA CCTTTTTCAA AAACATTAAC TCTCCAAATA AATCGAATCT 34312 .......... .......... .......... .......... .......... .......... 894 ATAACTGGTA AAAAGATATT TTTTTTCTTG ATTAGTCAAA AATGACAAGT ACAAAAGATA 34252 .......... .......... .......... .......... .......... .......... 894 AGTAAAAAAT CAAAATTGAA CAAGTAAAAA GAAATATATA AGGGAGTATA TAATCTATAT 34192 .......... .......... .......... .......... .......... .......... 894 ATTTGAAGAA TCTTGTAATT TTCAAGTAAT TAAATTTGAT GCCCAGCAAT GCATAATCTG 34132 .......... .......... .......... .......... .......... .......... 894 TATTTAATCA AGACTTTAAT ATAGTCGAGT GAAAAAAGAA GAAAGAAGTT GATTTTTTTA 34072 .......... .......... .......... .......... .......... .......... 894 ATAGTTTGAA GTTGACATTT GATTTTCAAA AATTATTGTT AAATGTATTT AGTCTTTTTT 34012 .......... .......... .......... .......... .......... .......... 894 GGTCAAAATA TAATCGTTCA AAAGCTTTTC AATCGTGTTA AGCAGCATTC TAGATTTTAA 33952 .......... .......... .......... .......... .......... .......... 894 AATAAGGAAC ATTTTTAAGC TTAAATAAAT ATATTTTACG AGTCATTTTG CTAAAGTCAA 33892 .......... .......... .......... .......... .......... .......... 894 TCCACTTAAT CAAAATTGAC AATAAAAAAA CAAAGATGAC AATAAAGAAC TGTTTATTTG 33832 .......... .......... .......... .......... .......... .......... 894 AAGAAAAATC TAATACAATT AACCATAATA TATTGGAAGA ATAGTGTTTT TCGTACCCTC 33772 .......... .......... .......... .......... .......... .......... 894 AATTATTGTT ATATAATTAT AACATGTGAT TTTGATATCT TTTTTTGAAA GTTATAAATG 33712 .......... .......... .......... .......... .......... .......... 894 CTTAGCGAAA TATTATAAAG ACTAAAATAG AAATTTATGA TATTTAAGGA ACTTAGAGTC 33652 .......... .......... .......... .......... .......... .......... 894 TATTTGGATT GGATTATTAC AAGTAGTCAA AATATTTTTT AAACATTTAC AAAAAGGTGG 33592 .......... .......... .......... .......... .......... .......... 894 ATAAATAAAT AAAAATGATT AATTTTAAGC TAAAATAATA AAAATAGATA CATAAAATAA 33532 .......... .......... .......... .......... .......... .......... 894 AATTTATAAC TTTAAGTCAA AAATTAAAAG CCATTCAAAC TAAATGAGAA AAGCGAAAAT 33472 .......... .......... .......... .......... .......... .......... 894 TTCCTAAATA ATATTTCTTG GTATCTTCTC ATTAGGGCTG TTCAAAATCG AATCGAAATT 33412 |||||||| ||||||| || |||| ||| .......... .......... .......... ..TAGGGCTG TTCAAAACCG AATCTAAACC 922 GATAAGC-GA ACTGATAAAA AAGTTATTGG TTTATATTAT TGGGTTATTG GTTTAGTGAT 33353 ||||||| || || ||||||| |||||||||| ||||||| || |||||||||| |||||||| | GATAAGCCGA ACCGATAAAA AAGTTATTGG TTTATATCAT TGGGTTATTG GTTTAGTGGT 982 TTTGATGACG ATTTTGA-TT TTTTTGTTAT CTGGTTATCG GTTCTCAACT GTTTAAAGTT 33294 ||||||| || |||||| || |||||||||| | || ||||| ||||| ||| |||||||||| TTTGATGTCG GTTTTGATTT TTTTTGTTAT C-GGGTATCG GTTCTTAACG GTTTAAAGTT 1041 TTTTCTTAAC GGGTTAACAG ATAACCCGAT AGTAAATTAA ATAATAATAT TTATACCATT 33234 ||||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||||||||| TTTTCTTAAT GGGTTAACCG ATAACCTGAT AGTAAATTAA ATAATAATAT TTATACCATT 1101 TTGTATATAA AGTCCTCGAT TTAGAGTTTA A 33203 |||||||||| ||| |||| |||||||||| | TTGTATATAA AGTTTTCGAC TTAGAGTTTA A 1132 hqPGS_C08SLe0082C24.1-_SGN-U324134+ (33439 33203) ******************************************************************************** EST sequence 14 -strand 930 n (File: SGN-U337965-) 1 CTAAGCAAAA TCCAAGTTAT ACCCACATTG CCAAAAAAAC AAAACACTTA AAATTTTAAT 61 AGAAAGGGCC CTTTCAAACC TTCCTCCCAT TTTACCTTTT AAATATATAA ATATATATAT 121 ATATATATAT ATATATATAT AAATATTACT TAATAACTAT AATAAGATGC TAGGAAAGCA 181 ATTATTTGTC AACGTTCCAA CTTTTCTAGG CAGGGGTAAT ATAGTAATTT ACTAAAATGT 241 GTGTTAAAGG AATTATGGTA CTAATTTGCT TCGTTGTAGA GCTTTTTTTT TATTAAACCA 301 TTAATAAAGC CCAATAATTG AGGGAGCCCA TATCATGGAA TGGGTGGAAT CATAAAGAGT 361 CCTAACATAT TTCCCCTAGA AAAAAGGAAA GTACAAATCA AATTTCCAAA GAGTTCTGAA 421 AGGTGGTATC TACGTGAAAG CTATTTTGGA AGTGAGATCC AAATAAAGGA GCTAAAGTAA 481 GAAAGGGTAA GATGTGTGGA AAATTAAAAA AGAGAGCAAC CATTGCTGCC CAATGCAAAG 541 ACCAACTTTG AAATAAGGAA AGAGGAGTTT TTCAAGTTTC TTTCACAGAG CTCATCCTAT 601 CTCTGAGGGT TATATACTTG AGTAGGGCTG TTCAAACCCG AATCTAAACC GATAAGCCAA 661 ACCGATAAAA AAGTTATTGG TTTATATCAT TGGGTTATTG GTTTAGTGGT TTTGATGTCG 721 GTTTTGATTT TTTTTGTTAT CGGGTATCGG TTCTTAACGG TTTAAAGTTT TTTCTTAATG 781 GGTTAACCGA TAACCTGATA GTAAATTAAA TAATAATATT TATACCATTT TGTATATAAA 841 GTTTTCAACT AAAAAAATAA AAAAAAAAAA AAAAAAACTC GAGGGGGGGC CCGGTACCCA 901 ATTCGCCCAT ATAATAGTCG TATACAACCC Predicted gene structure (within gDNA segment 40639 to 31741): Exon 1 36814 36801 ( 14 n); cDNA 612 625 ( 14 n); score: 0.571 Intron 1 36800 33437 (3364 n); Pd: 0.875 (s: 0), Pa: 0.917 (s: 0.81) Exon 2 33436 33217 ( 220 n); cDNA 626 846 ( 221 n); score: 0.886 MATCH C08SLe0082C24.1- SGN-U337965- 0.886 234 0.252 C PGS_C08SLe0082C24.1-_SGN-U337965- (36814 36801,33436 33217) Alignment (genomic DNA sequence = upper lines): ATTTTTTGGA CTATGCAAGG CCCACATATA CGTGTGAATA TCACCTTAGG ATATATTCTC 36755 || | | || || ATATACTTGA GTAG...... .......... .......... .......... .......... 625 CTATATTCTT CCGTGTCAAA ATTAAACTCT ATGGTCCAAA ATCAAATACC CCATCAAAAT 36695 .......... .......... .......... .......... .......... .......... 625 AATTAAGAGA ATTAATAACT TACATACACT CAAATTTTAT TAGATTTAGG TATGTTTATA 36635 .......... .......... .......... .......... .......... .......... 625 TACGTCCAAA TACATGTACC TTAGAATATA TAAGTTAAGT TTGTTTTAGA TAAATTGTAT 36575 .......... .......... .......... .......... .......... .......... 625 TCAAGTGAAT TTATATGTAT TTTTAATATA TAATAGATCT CAATAGATAT TTTCTTATGT 36515 .......... .......... .......... .......... .......... .......... 625 ATCTAATATT TCAGATACAT GCGAATCATA CATAATATTT TAAAAATATG AATATAATAA 36455 .......... .......... .......... .......... .......... .......... 625 TATTTATTAG TGAAGTATAT TTAATTATGT AAATTTTCTC CTAAAATAAT ATATATGATT 36395 .......... .......... .......... .......... .......... .......... 625 AGTAAAATAA ATTTTATTAC GTAGTTTCTC CCGAAGAGTC TGTCCAGTCT CCGCTCCAAA 36335 .......... .......... .......... .......... .......... .......... 625 ATAAATATGT GGTTTTACTG CATTTTGTGT CTATCGTGAA AAAATAATAA AAATATATCT 36275 .......... .......... .......... .......... .......... .......... 625 CATACTTTTC TTTTATAATT ACTTTAAAAA AGAATGACAC ATAAATTTAT TATCCACAAA 36215 .......... .......... .......... .......... .......... .......... 625 TATTTAATTA TACATTAACA TTTCAGTCAC AATGGGTCGT ATATATTTGA CAAAAAAATT 36155 .......... .......... .......... .......... .......... .......... 625 TTTAAGATGT ACTCCTTTAT TTAAAAATTT ATTTATGAAT ATGTGTAGTT TTGAAATATT 36095 .......... .......... .......... .......... .......... .......... 625 GCACCGTCTT TTCATATTAC TTAAATTTTA TATCTAGTCA AATTATATAA TTGAGATGGA 36035 .......... .......... .......... .......... .......... .......... 625 GAAATACTAA ATTATCTCTA TTAATTTATT AGATGTTCTT TTAGTATTAA ATAATATTAC 35975 .......... .......... .......... .......... .......... .......... 625 AAAAGAATAG TTAAACTTTA TTATTTATAT AAGAATATAC TTGAAAATAA TTACTATTCT 35915 .......... .......... .......... .......... .......... .......... 625 AATTTCGCTT CTATATTTTT TTTCACACTC ATAAAGTCAT AAACTCAACA TTTACCATCT 35855 .......... .......... .......... .......... .......... .......... 625 CATCATCTTG GTGAATACTT ACCGTACTGT TTTTTAATCA AGATATAATT TATCGTAGTT 35795 .......... .......... .......... .......... .......... .......... 625 AAATAATTTT TAAAAAATTT AGAGAAAATG GTGTAAAGTC CTTCTAAACT ATACCTGAAA 35735 .......... .......... .......... .......... .......... .......... 625 TTTCAACTAG ACACTCCAAT TTCACGGTTA TTACCCTCTT GAACTGTTTA AAACTGATAT 35675 .......... .......... .......... .......... .......... .......... 625 AAATTTACTC TCTAAATGAT TATGTAGAAA CAGTGAATAT ATCTCACTCT CTTAAAGAGA 35615 .......... .......... .......... .......... .......... .......... 625 GTGAGGACCA AAACAAATAA TAAATTTTAT TTTCAAAACT TTCTTTTCAT AAATATGTGT 35555 .......... .......... .......... .......... .......... .......... 625 ATTTCTAATT ATTCTTTTTT CTTATTTATT TCCTTTCTTC TTCACAACAA CATAAACTAA 35495 .......... .......... .......... .......... .......... .......... 625 ATCTCTCGTA TCACTCACCT TCTCTAAATT TGGATCCACC ATGGAATTTC ATTATTCTTC 35435 .......... .......... .......... .......... .......... .......... 625 TTGATTCTAG AATTTGTTTT CAATTTGTGC ACGAAATTGA AATTTTTTGA AAATCAATTC 35375 .......... .......... .......... .......... .......... .......... 625 CTTATTAATA TTATTAAAAT TTATAATCAT CATGTCTAAC CACATGGCCA AATGGATTAG 35315 .......... .......... .......... .......... .......... .......... 625 CAAATTCTTA TCTTGATTTT TTTGTGCTTA GTTTAATAAT TTAAATTCAA GTTCAGAAAG 35255 .......... .......... .......... .......... .......... .......... 625 AATTTTGGAT TGTCAACGAA ACCCATGTGT GATTTTGAAA ATAGAAATGA AAAGATCCAT 35195 .......... .......... .......... .......... .......... .......... 625 TGTTATGTAT CCATTACCTC AATTTGAAGA ATTCAACAAA TTCATCCATG AAAATAACTT 35135 .......... .......... .......... .......... .......... .......... 625 GAGTATCAAT CAAATAGTAG ATGAAACAGT TAGAACTAAA ATTTTTACTA AATTTTACCT 35075 .......... .......... .......... .......... .......... .......... 625 TTCAAATTGA AAAACTTTTG ATGTTTGCAA GAAGATGAAA ATGGTGGGAA AAAGATTATT 35015 .......... .......... .......... .......... .......... .......... 625 CAATTGCAAA AAATGAAAGA TTATCAAATA TTTATAACTT TACCTTTTAA CAATAAAACT 34955 .......... .......... .......... .......... .......... .......... 625 TGAAATTTCA TAACTGTACA TTCCATAAAG GTAAGTTTAA AACTAGCATA AATAAAAAAC 34895 .......... .......... .......... .......... .......... .......... 625 TTAGAAATTT TCTCTTCAAT GGCAAAAAAC GGAAAAAGAA AAAGAAAAGA AGAAAATAGC 34835 .......... .......... .......... .......... .......... .......... 625 TGGAAATAGA AAGAAAAAAA TATAAAAGAA AAATAAAACA AAGAAAGACA TCATAAATTT 34775 .......... .......... .......... .......... .......... .......... 625 TTTATTAAAA ATTAATATAT ATGACGTGGC AGGCAAGTGT GTTCACTCTC TAACAAAAAT 34715 .......... .......... .......... .......... .......... .......... 625 CTGAGTGTGA CCTTTTAGGA GGCTATATAT TTCATTTTTA AAATGTTTTG AGGAGTATTA 34655 .......... .......... .......... .......... .......... .......... 625 AGTACCCCGC AATGTATGAG TATGTAGTTG AAAATCCAGG AATAGATTAA CGGGTTTGAC 34595 .......... .......... .......... .......... .......... .......... 625 TCTTTTCTCA AAAAACTATG ATAAAGTATA GCTATGTATA TTTAAATACA TACTATTATG 34535 .......... .......... .......... .......... .......... .......... 625 TATCAATTTA TTTGATGTAA ACATTGTAAG TTTTTACTTA CTTTCTCCAT TTCTATTTAC 34475 .......... .......... .......... .......... .......... .......... 625 TTGTCCAATT TTGACTGAGC ACATTTATTA AGAAAATAAT AATTAACATA GTGAATTTAT 34415 .......... .......... .......... .......... .......... .......... 625 CATTTTATTT TTATAATTAA ATAGATAGAA TTTCAAGTCA ATTTACTCAT TAAAGATATT 34355 .......... .......... .......... .......... .......... .......... 625 CTACCTTTTT CAAAAACATT AACTCTCCAA ATAAATCGAA TCTATAACTG GTAAAAAGAT 34295 .......... .......... .......... .......... .......... .......... 625 ATTTTTTTTC TTGATTAGTC AAAAATGACA AGTACAAAAG ATAAGTAAAA AATCAAAATT 34235 .......... .......... .......... .......... .......... .......... 625 GAACAAGTAA AAAGAAATAT ATAAGGGAGT ATATAATCTA TATATTTGAA GAATCTTGTA 34175 .......... .......... .......... .......... .......... .......... 625 ATTTTCAAGT AATTAAATTT GATGCCCAGC AATGCATAAT CTGTATTTAA TCAAGACTTT 34115 .......... .......... .......... .......... .......... .......... 625 AATATAGTCG AGTGAAAAAA GAAGAAAGAA GTTGATTTTT TTAATAGTTT GAAGTTGACA 34055 .......... .......... .......... .......... .......... .......... 625 TTTGATTTTC AAAAATTATT GTTAAATGTA TTTAGTCTTT TTTGGTCAAA ATATAATCGT 33995 .......... .......... .......... .......... .......... .......... 625 TCAAAAGCTT TTCAATCGTG TTAAGCAGCA TTCTAGATTT TAAAATAAGG AACATTTTTA 33935 .......... .......... .......... .......... .......... .......... 625 AGCTTAAATA AATATATTTT ACGAGTCATT TTGCTAAAGT CAATCCACTT AATCAAAATT 33875 .......... .......... .......... .......... .......... .......... 625 GACAATAAAA AAACAAAGAT GACAATAAAG AACTGTTTAT TTGAAGAAAA ATCTAATACA 33815 .......... .......... .......... .......... .......... .......... 625 ATTAACCATA ATATATTGGA AGAATAGTGT TTTTCGTACC CTCAATTATT GTTATATAAT 33755 .......... .......... .......... .......... .......... .......... 625 TATAACATGT GATTTTGATA TCTTTTTTTG AAAGTTATAA ATGCTTAGCG AAATATTATA 33695 .......... .......... .......... .......... .......... .......... 625 AAGACTAAAA TAGAAATTTA TGATATTTAA GGAACTTAGA GTCTATTTGG ATTGGATTAT 33635 .......... .......... .......... .......... .......... .......... 625 TACAAGTAGT CAAAATATTT TTTAAACATT TACAAAAAGG TGGATAAATA AATAAAAATG 33575 .......... .......... .......... .......... .......... .......... 625 ATTAATTTTA AGCTAAAATA ATAAAAATAG ATACATAAAA TAAAATTTAT AACTTTAAGT 33515 .......... .......... .......... .......... .......... .......... 625 CAAAAATTAA AAGCCATTCA AACTAAATGA GAAAAGCGAA AATTTCCTAA ATAATATTTC 33455 .......... .......... .......... .......... .......... .......... 625 TTGGTATCTT CTCATTAGGG CTGTTCAAAA TCGAATCGAA ATTGATAAG- CGAACTGATA 33396 || ||||||||| |||||| || | |||||| | ||| |||| .......... ........GG CTGTTCAAAC CCGAATCTAA ACCGATAAGC CAAACCGATA 667 AAAAAGTTAT TGGTTTATAT TATTGGGTTA TTGGTTTAGT GATTTTGATG ACGATTTTGA 33336 |||||||||| |||||||||| ||||||||| |||||||||| | |||||||| || |||||| AAAAAGTTAT TGGTTTATAT CATTGGGTTA TTGGTTTAGT GGTTTTGATG TCGGTTTTGA 727 -TTTTTTTGT TATCTGGTTA TCGGTTCTCA ACTGTTTAAA GTTTTTTCTT AACGGGTTAA 33277 ||||||||| |||| || || |||||||| | || ||||||| |||||||||| || ||||||| TTTTTTTTGT TATC-GGGTA TCGGTTCTTA ACGGTTTAAA GTTTTTTCTT AATGGGTTAA 786 CAGATAACCC GATAGTAAAT TAAATAATAA TATTTATACC ATTTTGTATA TAAAGTCCTC 33217 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| || CCGATAACCT GATAGTAAAT TAAATAATAA TATTTATACC ATTTTGTATA TAAAGTTTTC 846 hqPGS_C08SLe0082C24.1-_SGN-U337965- (33436 33217) ******************************************************************************** EST sequence 32 -strand 890 n (File: SGN-U335137-) 1 GTAAAACTAT GTAGNATGAC CATTCTTTTC TTCGATACCA AAAATTAAAT TCCATATAGA 61 CATAAAAAAT GTTTTAAATT TTTTTCTTAC ACTANGGGAA TGNAAGAAAA AAAACAAGAT 121 TAATNAACTC AAATAATTAT AATAAATAAG TCAAAAAAAT AATTTATGTA TTAAAAAAAT 181 TTGAAATATA CCTTGAACTT TGAAAAAAGA ATCATATATG CCCCTAAATA TATTTTTTTT 241 TAAAATTAAA GTAAAATTAT AAATTTAAAA GTAATTTTTT CACTTTCGTT AAATGAAGGG 301 TATATATGAG CTCATTTTGT AACGGCAGAG GTATATGTGA ACCATTTGTA TAACGGTAAG 361 GGTATATATG AGCCACTTTC ATAACGAGGG GTATATCAGT TTCAAATGAC AAAGTTGAGG 421 GGTATATCAT ACCCTTTTCC CATAATATTA TTCATTTTTG GGTTGACGGG TCAAACCTTG 481 GGCTGCTTAG GACTTGATTA GACCGCTATT TTATTGACTC TTTAATTAAT GGGCAACTTT 541 CACATATAAC AAACAAAAAA TTCATATTTG TATGCTATAA CAAAGTTTGC ATAATTGCGC 601 TCCATAGCAA ACATAAAATT GTATAATTCG CTGACCTAAA TTGTATAATT CGCTGGCCTA 661 TTTCGCTGCA ATTGTATAAT TCGCTATCCT ATTTAACTAC AATTGTATAA TTCGCTGCCT 721 ATTTCGCTGC AATATTATTA TAAAATTTGC TTTGCATATA ATTGAACCGA ATTAAAATGT 781 ATGTATATTG CATAATTATA AGTGTATAGC AATAAGATAT ATGTTTTTCC CTGCAGCCCG 841 GGGGATCCAC TAGTTCTAGA GCGGCCGCCA CCGCGGGGAG CTCCAGCTCT Predicted gene structure (within gDNA segment 32846 to 40824): Exon 1 37705 37724 ( 20 n); cDNA 484 503 ( 20 n); score: 0.600 Intron 1 37725 38727 (1003 n); Pd: 0.418 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 38728 38845 ( 118 n); cDNA 504 620 ( 117 n); score: 0.860 Intron 2 38846 38875 ( 30 n); Pd: 0.282 (s: 0.94), Pa: 0.000 (s: 0.78) ?? Exon 3 38876 38940 ( 65 n); cDNA 621 689 ( 69 n); score: 0.785 Intron 3 38941 39091 ( 151 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.76) Exon 4 39092 39152 ( 61 n); cDNA 690 748 ( 59 n); score: 0.754 Intron 4 39153 39468 ( 316 n); Pd: 0.000 (s: 0.80), Pa: 0.457 (s: 0) Exon 5 39469 39487 ( 19 n); cDNA 749 767 ( 19 n); score: 0.474 Intron 5 39488 39907 ( 420 n); Pd: 0.175 (s: 0), Pa: 0.927 (s: 0.60) Exon 6 39908 39951 ( 44 n); cDNA 768 811 ( 44 n); score: 0.602 MATCH C08SLe0082C24.1+ SGN-U335137- 0.814 327 0.367 C PGS_C08SLe0082C24.1+_SGN-U335137- (37705 37724,38728 38845,38876 38940,39092 39152,39469 39487,39908 39951) Alignment (genomic DNA sequence = upper lines): TGGGGTGGAG TGGATTGCAC GTATATCTGA TTTTATGATG GTTCAAATTT GATTTTAACT 37764 || ||| | |||| || TGCTTAGGAC TTGATTAGAC .......... .......... .......... .......... 503 TTTAACACGT TATTTGCTCG GTTTCAAAAA GGAAAATCTA GTTTGACTTG GAACGAAATA 37824 .......... .......... .......... .......... .......... .......... 503 TAAGAAAAAA AAAGACTTTT TAATCTATCA TTCTAAATTA AAGTAATGTA CCAAAATGCT 37884 .......... .......... .......... .......... .......... .......... 503 CTTTAATCTT GTAATCTTAA ACATGTTATG TGGAAAGTTA AAGTTAAAGT GTTGCCAAAA 37944 .......... .......... .......... .......... .......... .......... 503 AAAAAGGGTC ATTGTTTTCG AAACAAACTA AAAAGAAAAT AGGGACATTC TTTTTAAAAT 38004 .......... .......... .......... .......... .......... .......... 503 GGGAGGGAAT ATAACAATGA TAAAACATTA TTTATTAAGA TAATTTCTTT AAAGCTACTA 38064 .......... .......... .......... .......... .......... .......... 503 AAATATTTAA GATAATAAAT GAAAATACTT CATTAAAAAA CGATTTCTTA CATGTATCCT 38124 .......... .......... .......... .......... .......... .......... 503 AATTGACCTC AAAAAATAAA ATTTTAAGTC ATTATTTATT AAATTAATAT AAGTTTATGA 38184 .......... .......... .......... .......... .......... .......... 503 AAAAATGAAT TTATTTTAGT ATCAAATTTA AATAAGAAAA GAAAATATTA TAAAAATTAT 38244 .......... .......... .......... .......... .......... .......... 503 GCAGGGAGAA GCAAAGTGGG ACGGATTAAT AAAGAAATTT GTCACGCTGG ATTAGGGATG 38304 .......... .......... .......... .......... .......... .......... 503 TCAAAATGAA CCCAAACATA GGTAACCCGT CCAACTCGCC CAAAATTTTA AGGATTGACT 38364 .......... .......... .......... .......... .......... .......... 503 TAAAATAATT TAAATTAGGT TTAATCTCAA CACATTCAAG GATTACTCAT TTAAAGGGAA 38424 .......... .......... .......... .......... .......... .......... 503 TCCTCAAATA AGCCTAATTC AATCTCCAAT TTCGACCCGC TTTAAAACTT TTTATTAAGA 38484 .......... .......... .......... .......... .......... .......... 503 TATCATCCTA TATGTAAGGT ATGAATTATT ATCTATTTAA CAACTTTTAA GATTTATCTA 38544 .......... .......... .......... .......... .......... .......... 503 TCCATTTGTT ACTTTTTTTT ATAAAAAAAT TCTCGAGCTA AATTTTAAAT TGTGATTATA 38604 .......... .......... .......... .......... .......... .......... 503 AAAGTTGAAT ATCAATATGT TGAATTTTTT TAGATTAATC CGGTCAAATT AGGTGAGTCA 38664 .......... .......... .......... .......... .......... .......... 503 AGATCCAACC CGTTTTTAGC CCATTTGAGC CCAGAGTAAA CTTGAATTGG TCAAGACCCA 38724 .......... .......... .......... .......... .......... .......... 503 ACCCGACTTC TATTTCAACC CATTTTAATA A-GGGCAACT TTCACATATA ACAAACAAAA 38783 || || | | | || | ||| | || | |||||||| |||||||||| |||||||||| ...CG-CTAT TTTATTGACT C-TTTAATTA ATGGGCAACT TTCACATATA ACAAACAAAA 558 AATTCATATT TGTATGCTAT AACAAACTTT GCGTAATTGC GCTCCATAGC AAACATAAAA 38843 |||||||||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||||| AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC AAACATAAAA 618 CTGTATAATT TGCTATACAT ATACAATTGT GT----AATT CGCTGACCTA AATTGTATAA 38899 | |||| |||||||||| |||||||||| TT........ .......... .......... ..GTATAATT CGCTGACCTA AATTGTATAA 648 TTCGCTGGCC TATTTCGCTG CAATTGTATA ATTTGTTTTG CATATAGTTG AATTGAATTA 38959 |||||||||| |||||||||| |||||||||| ||| | | | | TTCGCTGGCC TATTTCGCTG CAATTGTATA ATTCGCTATC C......... .......... 689 AAATGTATGT ATATTGCATA ATTATAAGTG TATAGCAAGA AGATATATGT TTTTCTCGCT 39019 .......... .......... .......... .......... .......... .......... 689 TTATACAAAA ACAGAAACAC AATATATACA CTTCTGTTGT ATAAAGCTAG AGAAAATTGT 39079 .......... .......... .......... .......... .......... .......... 689 ATTACACTAA AATTGTTAAT TCGCAATTGT ATAATTCGTT GGCCTTTTCT CTGCAATATT 39139 | |||| | ||||||| |||||||| | | | |||| |||||||||| .......... ..TATTTAAC T-ACAATTGT ATAATTCGCT GCCTATTTCG CTGCAATATT 736 TGAAGTAAAA TGTTTGTAAA TTGTATAATT AAGTGTATAA CACGAAGATA TACATTTTTG 39199 | ||||| | | ATTA-TAAAA TTT....... .......... .......... .......... .......... 748 CATGTGTATA TACAATTTTC TCTTGCTTTA TACAAAACAG AAACAGAATT ATACACTTCT 39259 .......... .......... .......... .......... .......... .......... 748 GTGTATAAAG CGAGAGAGGC GAGCGAGAAT GGAGAGTGGC GAGCGAGATT TTTGGGTGAG 39319 .......... .......... .......... .......... .......... .......... 748 AGACGCTGGC AAATTTTAGC TAATGTTTGC TATGGAGCAC AAATAAATCA AACCCTGGCT 39379 .......... .......... .......... .......... .......... .......... 748 ATTCCATTTA ATTTAGCTTA TTAGTTTGCT ATTATATATA ATTTTCCCTT TTAATAACCC 39439 .......... .......... .......... .......... .......... .......... 748 AAATCACCCA TTTGATACCC CTACGCTAGG CAAATCAAAA GTTTGAGGGT TAAGCTCAAT 39499 | | || | |||| .......... .......... .........G CTTTGCATAT AATTGAAC.. .......... 767 CACCTCATAC CCAACCTGCT CCTAATAAGC ATCTCTTAAA TCAGGAATGT GTCTTAATTT 39559 .......... .......... .......... .......... .......... .......... 767 TACTTAATTA CTTTGTTAAT GCAAAACTTG ATTATTATTA TTTTTTTAAA AATGATTTTG 39619 .......... .......... .......... .......... .......... .......... 767 CTTAGGTAGG CAATTGCAAA TATTATTTTT AAATTTGTTT TTTTAAAGGC AATTGTGAAT 39679 .......... .......... .......... .......... .......... .......... 767 ATTCAAACAT ACTAATCAAC ATCCCTCAAA AAGGAAATAA CATCTAAGAA ATCCGTCTTA 39739 .......... .......... .......... .......... .......... .......... 767 TTCACTATCA TGATGATGGT GTGATATCGT GCATTTTAAT ATTAAAAACA AAAATATTAG 39799 .......... .......... .......... .......... .......... .......... 767 AAAAAATGAT AGAAATCGTA TCTCTAAATA TTTTTATTAT CATTATCACT TAATAGTTTT 39859 .......... .......... .......... .......... .......... .......... 767 ACAAATTTCT AAAATTTCTA ATTTTCACAC ATGAAATTAA TGTATCAGCG CA-TCAAATG 39918 || | | ||||| .......... .......... .......... .......... ........CG AATTAAAATG 779 AATGTATCTC GCACATCAAA TTAATCTATC TCA 39951 |||||| | ||| | | | | | ||| || TATGTATATT GCATA-ATTA TAAGTGTATA GCA 811 hqPGS_C08SLe0082C24.1+_SGN-U335137- (38728 38845,38876 38940,39092 39152) ******************************************************************************** EST sequence 9 +strand 2089 n (File: SGN-U315404+) 1 ATTTTTGATT ATATATAGAA AAAAATATGG GTTATTTACA AGTTTTTATT ACATCATTTT 61 TGTCAATTTC TTGTGTTAGT ATTTTCATGC CAAACTTGGT AGATGCTCAA CTCAAAACCA 121 ATTTTTATGC CCAAACTTGT CCTAATGTTG AATCCATTGT GCGTAATGTT GTTAACCAGA 181 AATTCAAACA AACGTTTGTC ACAATTCCGG CTGTTCTTCG TCTTTTCTTC CATGATTGCT 241 TTGTTGAGGG TTGTGATGCA TCGGTGATAA TAGCATCAAC GGCAGGGAAC ACAGCAGAAA 301 AAGATCACCC AGATAATCTT TCATTGGCTG GAGATGGATT TGACACAGTT ATCAAAGCAA 361 AAGCCGCAGT TGATGCGATC CCAAGTTGTA AAAATAAAGT TTCTTGTGCT GATATTCTTG 421 CCTTAGCCAC TCGAGATGTT ATTCAACTAT CCGGTGGACC GGGGTATGCA GTGGAATTGG 481 GGAGATTAGA TGGTTTGACA TCAAAATCTA CAAATGTAGG GGGAAAGTTG CCTAAACCTA 541 CTTTCAATTT GGATCAACTC AATACAATGT TTGCCTCTCA TGGTTTAAAT CAGGCTGATA 601 TGATTGCCTT ATCTGCGGCC CATACTGTTG GATTTTCTCA CTGCGACCAA TTCTCGAACC 661 GAATTTTCAA CTTTAACCCT AAAAACCCAG TGGATCCAAG TCTCAACAAG ACGTATGCAG 721 CCCAATTAGA ACAAATGTGT CCGAAAAATG TGGACCCAAG AATAGCCATC AACATGGACC 781 CAATAACACC TAGGGCTTTT GACAATGTGT ATTTCCAAAA CTTGCAAAAC GGAATGGGCC 841 TATTCACATC AGATCAAGTT TTGTTCACAG ACCAAAGGTC TAAAGGTACT GTTAATTTGT 901 GGGCCAGTAA TTTTAAAGTT TTTGAAACCG CATTTGTTAA TGCGATGACT AAATTGGGCC 961 GAGTTGGTGT GAAGACGGGT AAGAATGGAA ATATTCGTAT AGACTGTGGA GCATTTAATT 1021 AAGGGCAACT TTCACGTATA GCAAATAAAA AATTCATATT TGTATGTTAT AACAAAGTTT 1081 GCATAATTGC GCTCCATAGC AAACATAAAA CTGTATAATT CGCTATACAT ATACAATTGT 1141 ATAATTCGCT GGCCTAAATT GTATAATTTG ATGGCCTATT TCGCTGCAAT TGTATAATTC 1201 GCTATCTTCA TTCACTGCGA TTGTGTAATG CACAATCGTA TAAATCGCTG CTTATTTCGC 1261 TGCAATATTT TTATAAATTT GCTTTGCATA CCGTTGAATC GAATTAAAAT GTATGTATAT 1321 TGCATAATTA TAAGTGTATG GCAAGAATAT ATATGTTTTT GTCTCGCTTT ATACAAAAAC 1381 AAAAACACAA TATATACACT TCTGTTGTAT AAAGTTAGAG AAAATTGTAT TTCACTGCAA 1441 TTATATAATT CACAATTGTA TAATTCGTTG GCCTTTTTCT CTGCAATATT TGAAGTAAAA 1501 TGTTTGTAAT TTGTATAATT AAGTGTATAA CACGAAGATA TATATTTTTA CATGTGTATA 1561 TACAATTTTC TCTCGCTTTA TACAAAATAG AAACAGAATT TATACACTTC TGTGTATATA 1621 GCGAGATAGG CGAGCGAGAA TGGAGAGTGG CGAGCGAGAT TTTTGGGAGG GAGACGCCTG 1681 ACAAACTTTA GCTAACGTTT GCTATGGAGC ACAATTAAAT CAAACTCTAG CTACTCCATT 1741 TAGTTAGATT ACTAGTTTGC TATTATATAC AATTTTCCCA AGAGCTTGTA TAAAATGGAG 1801 AGAAGGAAAA AGATTTAGAA TTATCGCTTG TGAATGACAA GAAAAGATTG CAAAATAAGA 1861 ATTTAGTTGT TTTGCTTTAA TAAGTTCCTT AATCATTTCA TTAGGGGTGT AATAATAGAA 1921 TAAGAAAAGG GGCTTGAAAT TCAGCTATAA ACAACCAGGG CATAGGTAAC GTGTATACTT 1981 GATGTTATAG GTGAAATTTC AGCTTCTCAA TTTCGATTAA TTAACATTAT ATATATATAT 2041 ATATATTCCC CCAGTATCAC ATTTGATAGG AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 28796 to 43798): Exon 1 28932 28956 ( 25 n); cDNA 1060 1084 ( 25 n); score: 0.560 Intron 1 28957 29928 ( 972 n); Pd: 0.421 (s: 0), Pa: 0.984 (s: 0) Exon 2 29929 29958 ( 30 n); cDNA 1085 1112 ( 28 n); score: 0.500 Intron 2 29959 32000 (2042 n); Pd: 0.983 (s: 0), Pa: 0.927 (s: 0.56) Exon 3 32001 32040 ( 40 n); cDNA 1113 1152 ( 40 n); score: 0.562 Intron 3 32041 34460 (2420 n); Pd: 0.761 (s: 0.56), Pa: 0.865 (s: 0) Exon 4 34461 34474 ( 14 n); cDNA 1153 1166 ( 14 n); score: 0.714 Intron 4 34475 38637 (4163 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 5 38638 38656 ( 19 n); cDNA 1167 1183 ( 17 n); score: 0.579 Intron 5 38657 38837 ( 181 n); Pd: 0.014 (s: 0), Pa: 0.000 (s: 0.56) Exon 6 38838 39429 ( 592 n); cDNA 1184 1781 ( 598 n); score: 0.848 Intron 6 39430 42036 (2607 n); Pd: 0.000 (s: 0.84), Pa: 0.999 (s: 0) Exon 7 42037 42045 ( 9 n); cDNA 1782 1790 ( 9 n); score: 0.556 Intron 7 42046 43441 (1396 n); Pd: 0.000 (s: 0), Pa: 0.347 (s: 0) Exon 8 43442 43465 ( 24 n); cDNA 1791 1813 ( 23 n); score: 0.792 PPA cDNA 2071 2089 MATCH C08SLe0082C24.1+ SGN-U315404+ 0.848 753 0.360 C PGS_C08SLe0082C24.1+_SGN-U315404+ (28932 28956,29929 29958,32001 32040,34461 34474,38638 38656,38838 39429,42037 42045,43442 43465) Alignment (genomic DNA sequence = upper lines): TTGCCAATAA TAAGACAGAG TACAGGCAAG CACCCAGAAA CGGCTATAAT TCTGACACGT 28991 ||| | | ||| | || | || TTGTATGTTA TAACAAAGTT TGCAT..... .......... .......... .......... 1084 CATTGCACAA GTCACCAATA GGTTTTTTAA TCAATTTTTT TAAAAAAAAT AGGCCAAAGA 29051 .......... .......... .......... .......... .......... .......... 1084 TAAAAACATT AATGAGGATA TGGAGGTGAG AAGTAAAAGA TAATTGCATA ATATCTAGTT 29111 .......... .......... .......... .......... .......... .......... 1084 TTTCTTATAA TATTATTATT AATTCTTCTA CTTTCTTAGA CTTCAATATT ATTATTATGT 29171 .......... .......... .......... .......... .......... .......... 1084 GTTGCTTTTT TTACTTTTTT TCTCTTATTC TATTGTTTGT TGTTATTATT GATATTTTCT 29231 .......... .......... .......... .......... .......... .......... 1084 ATTAAACTCC TTTTCCTAGT TATTTGGTAT TGTTTTATTT GAGTTGTAAA TTTATTTAAA 29291 .......... .......... .......... .......... .......... .......... 1084 TAACTTATAA AGTAATAATA AGAATGTTTA CACCCATCTT CTTAAATGAG ATTTGCTAAA 29351 .......... .......... .......... .......... .......... .......... 1084 TATGTTAATA TATACACATA AAGAATAAAA TTTAACATTA AGAATCAAAG CCAGGTCTTG 29411 .......... .......... .......... .......... .......... .......... 1084 ATTTAATAAG GTAGATTTTT AGGTTTTTAT CAATAAAATT ATCGTATATT TAAAATTATC 29471 .......... .......... .......... .......... .......... .......... 1084 TAAGTTTAAT ACATATAATT TTATTAAAAT TATATAGGCC ACTTTTTTTT TCTCTATATG 29531 .......... .......... .......... .......... .......... .......... 1084 CCACTAATAA GAATGGAATC ATGTTTTTTT TTTTTGGGTA TGATTTTGAT ATACAAAATT 29591 .......... .......... .......... .......... .......... .......... 1084 AATTTTTTTA ATAGAAATAT AAAGTAGAAA TTGACACATA AGATTCAATA TAATCCAATC 29651 .......... .......... .......... .......... .......... .......... 1084 TATATTTCAA TATTTTGGAG CAATTCATGA GATCGTATAT TCTTTGTTAC TATAATATTT 29711 .......... .......... .......... .......... .......... .......... 1084 TACAATTTTA AAAATAATTA TATTTATATA ATTTTATAAT CCTCACATAA TTAATAATTA 29771 .......... .......... .......... .......... .......... .......... 1084 CATACAACGC AAAAAAACAG CTCAAGATTA ATATATACAA CAAATTAATG GAAAAATTCA 29831 .......... .......... .......... .......... .......... .......... 1084 ACACTATCTA TTAATTATCT ATATATGAAT GAATAGACAG TATTTTTTTT TTTTTTGGAG 29891 .......... .......... .......... .......... .......... .......... 1084 ATATTGTTTT CACTTCAATG ATATCCAATT GGGGCAGGGT AGCCCTTCAA CTCATGCCCT 29951 | || || || || | .......... .......... .......... .......AAT TGCGCTCCAT AGCA--AACA 1105 TGACACTGTA TATCCTGTGT AACAAAAAAA AAATTTAAAT TTTTAAAAAA CACAAATAGT 30011 | | ||| TAAAACT... .......... .......... .......... .......... .......... 1112 TCTTTTTAAT ACTATAAAAA TTCGAACGTA CAAAATTAAA AGTAGAAAAA TCTCACCGAA 30071 .......... .......... .......... .......... .......... .......... 1112 GCAAAGTGAT TTAGGTCCCG ATGATGTGCC TCATCGGCCC TAATAACAGT AACAACATCT 30131 .......... .......... .......... .......... .......... .......... 1112 TTTAGCGTTG CATCGGCCGG CAAACGCCAA TAATCAATAG CAATAGCCGG TGCAGGCGAG 30191 .......... .......... .......... .......... .......... .......... 1112 TTCTCGAAAA GTCCCTTTTC TATATCGATC AAAAACTCTG TATACGAATT TACTGCTTCT 30251 .......... .......... .......... .......... .......... .......... 1112 TCTTCTAAGT AACCAACAAT TCGATGAGCC AATTTTGGGG ACGCTAAATA GGCAATGAAA 30311 .......... .......... .......... .......... .......... .......... 1112 TAGGCATTGA CAAATACGCC TTGAACTGCA AAGACTAATG CACGTTCGTA CCATTTCGGA 30371 .......... .......... .......... .......... .......... .......... 1112 TTTGATAATT CGATAAAGGT CATGAGATGC ATCCGTTCGT TCTCTGCTTC TTCGAGGAGG 30431 .......... .......... .......... .......... .......... .......... 1112 GCTTTGATCC AACCACCACT GTGCTCGAAT CGACGGAGGG ATTTACAGTG GAGGAGCATA 30491 .......... .......... .......... .......... .......... .......... 1112 CCACCTACCA TGCCTGGCAC GGCTGCAACC GTTTCTAGTA ACATAGCATG ACACATGTGA 30551 .......... .......... .......... .......... .......... .......... 1112 CGTCTCTGCG AAATTAAATA TACTGTTAGT GTATATAAAT TAAACGTTAT AATAATGTAT 30611 .......... .......... .......... .......... .......... .......... 1112 AGGGTTATAG TAGGTAATGG TCCCTTGTGT TTTTTTGGAG TTTCAATATA CTTTTCATTA 30671 .......... .......... .......... .......... .......... .......... 1112 ATTTTGGTCT TTTAAATAAG TTCACTAAAA TTGAGTATGA ACAATTTTTG TTCAATCATT 30731 .......... .......... .......... .......... .......... .......... 1112 TAAATGAATA TATATTAATT AGATTTGATA GAAACTTATG AGAGGGAAAA AGAGTTTCTG 30791 .......... .......... .......... .......... .......... .......... 1112 AAGGAATTTA TATTTAGAGG TCTAATTTCT ACAATTATAC TATTTTTTTT TAGACTCCGA 30851 .......... .......... .......... .......... .......... .......... 1112 ATTTCTAATC TTGTTTATTT ATTTTTGATG TGTAATGGAA TTTCTTTTAT ATAGCAATTG 30911 .......... .......... .......... .......... .......... .......... 1112 TTACAATTTT ATGGGACTTT CTTAACAAAT TTCTAGTTAT ATTTTATCCC CTGGTCGATT 30971 .......... .......... .......... .......... .......... .......... 1112 TTTTTAAATA ACTTTAAGAG ATTCTCTACG ACGAGCTAGG AAATCGTACA TATAACCTCA 31031 .......... .......... .......... .......... .......... .......... 1112 TTATGAATTA CGATATTTTT GAGCGTTTAA ATTTTAATTT TTCATTCGTA TTAATCTATA 31091 .......... .......... .......... .......... .......... .......... 1112 AATATTTTTG TGATATGACT TTAAATCGAT TTTTTTGAAA CAAAATTCCC TTTTAACACT 31151 .......... .......... .......... .......... .......... .......... 1112 TTGTTTGGAT CATTGTTACC GATTGTTTCA TAATGTATTG TATTGTATTG TACTCTATTG 31211 .......... .......... .......... .......... .......... .......... 1112 TACTGTATTG TATGGTAGAT ACAATGTTTG GCTAGACTGT ATTGTATGTT GTTGTTTAAT 31271 .......... .......... .......... .......... .......... .......... 1112 AACATTTTAA TTGTTTGGTT TGATAGTACG TACTGTATTG TAATTTATAA ATTTACTAAA 31331 .......... .......... .......... .......... .......... .......... 1112 ATATCCTAAT TATTCTATGG TAGGAGGTTT TAGTAGATTC AAATAATTAA GATAAAGGGT 31391 .......... .......... .......... .......... .......... .......... 1112 AAAATAGTAT TTTAAAATAT TATGTAAATA TATAATTGAA AAAGGATATT AAGTAACAAT 31451 .......... .......... .......... .......... .......... .......... 1112 GGGAACACAC CAAATTGAAT GTTCTATAAA ATAGTGGTTT TCATTATTAC TTAACAACCA 31511 .......... .......... .......... .......... .......... .......... 1112 AATTTTATAA TACAATACAA TACATTTTAA GTAATAATCC AAACAAATAT TGTAAGTATA 31571 .......... .......... .......... .......... .......... .......... 1112 ATAATGTTAC TGTACAATAC AGTAGATAAC AATGATCCAG ATATAGTGTA AATATATCTG 31631 .......... .......... .......... .......... .......... .......... 1112 AGATAGTTTG TTAAATTTTT TAAATGAAAA CCAAAGATGC TCTTTTTTAA TTTATTATTA 31691 .......... .......... .......... .......... .......... .......... 1112 AACAATATAT GTAAAGGAGT ATTTTAAACA TATCGCGCCG ATACCATTTT GTCATTTTCT 31751 .......... .......... .......... .......... .......... .......... 1112 CCAACTAGTG CGGTAAGATC ACGTTGTCTT TTTTTTTTTT TTAATTTAAT TATTGGGATC 31811 .......... .......... .......... .......... .......... .......... 1112 ATTATTTAGT TTAATTTAAT ATTGAAAAAA TCTTGTTGCA ATAATTTATA GTAGTAGTAA 31871 .......... .......... .......... .......... .......... .......... 1112 AAAATCATTT AACTAAAATT ATTTTTTTTA ATAATAAGAG AGTCAAGATG TTGACCTGGA 31931 .......... .......... .......... .......... .......... .......... 1112 AAAACAAGTA GGTGGGGTAC TTTAAAGATT GGACTGTCCA ATAAGCAAAC TTGTCCATAA 31991 .......... .......... .......... .......... .......... .......... 1112 AATTGGTAGG CATATGGTGC TTCTCCACAT -CAATTGAAA TATCAGCTGA GTACGTCTCC 32050 | ||| || | | || || |||||| | || |||| .........G TATAATTCGC -TATACATAT ACAATTGTAT AATTCGCTGG .......... 1152 CATGGCTGTC AAAACCAAAA AAAAAAAAAA AATATATATA TATATATATA TATATATAAT 32110 .......... .......... .......... .......... .......... .......... 1152 TAAAATTATG AGTTTAAGTT ATATATAGTA TCAATATAAA ATATTTTTAC ACGATCAAGT 32170 .......... .......... .......... .......... .......... .......... 1152 TATCTAAAAG AGATTTAGTT ATAGCCTTAT AAGTAAGTCA TAATTTAGAA ACATACTTCC 32230 .......... .......... .......... .......... .......... .......... 1152 TCTGTCTCGT TTCAGAGAGA GTACAAAAAT ATGTCATTCT TTCTGACTAA AAAAGAAAGT 32290 .......... .......... .......... .......... .......... .......... 1152 CAATCATATA AAACGGAATA AAGGGAATAT ATTATTCGCG TACGTACCCT GAAGCTGTTC 32350 .......... .......... .......... .......... .......... .......... 1152 CACTTCCATG GTGTACCATC TTCCTTGGAG ATTTTGGGAG GATCCACCCC CCAATAGCTA 32410 .......... .......... .......... .......... .......... .......... 1152 ACAATTTTCT TAGCCTTGTC GCCGGCGGCG TTGGTTGCAT CAGTGTGTGA TGGTTGATTA 32470 .......... .......... .......... .......... .......... .......... 1152 TGTGTTTTTT GTTCTTCTTT TGTTTTACTA GAAGTATTCA TATTACTCCA ATGACGAATT 32530 .......... .......... .......... .......... .......... .......... 1152 TGTACCATGC CTCCACGGGG CAAAAATTCG CCCCGTAATT GTCTCATAAG TAATCCAGAT 32590 .......... .......... .......... .......... .......... .......... 1152 ATTTTCATTG CTGCATTACG ATTCATATTC AAATGATTGA AATTTAACAA AATAAGAAAT 32650 .......... .......... .......... .......... .......... .......... 1152 GTTGATGATG TTTTTTTATG GTGAAAAATT GTTGGTTTAT ATATAGTGTT TAAGTTGAAA 32710 .......... .......... .......... .......... .......... .......... 1152 AAAGTGGAGG AATATGATGT AATATATGAA AGAGTATGAG AAAGTTGTTT GGAATTGACT 32770 .......... .......... .......... .......... .......... .......... 1152 TTTCCATAGT ATTGGGAGAG TGATATTGCT TCTTGGTGGT GGCCAACTTT TATTTTACTT 32830 .......... .......... .......... .......... .......... .......... 1152 TGACTTTTAG TTATGGAAAT TTTCATAATT TCTTGGAGGA ACTAATATGA GAAGTAGGGT 32890 .......... .......... .......... .......... .......... .......... 1152 GGTATATCGG CCGGTTTGGT TTGGTTTTGA AGTTTATCGG GTTGGCTTAT TGGTTATCGA 32950 .......... .......... .......... .......... .......... .......... 1152 TTTGTAGAGA TGCTAAATCG TTATAGAACC ATTAAGATAT TAGTTTATCG GTTATTGATC 33010 .......... .......... .......... .......... .......... .......... 1152 GTTATCGGTT CGGTTATCGA TTTAATCGTT AAGATTTGAC AAAAAAAAAA CATTAAAAAT 33070 .......... .......... .......... .......... .......... .......... 1152 CAATTAGAAA CAAGGGGACT AACTAAATAA ATCATGCACT TGAGTTCACA AGTTACATCT 33130 .......... .......... .......... .......... .......... .......... 1152 TGCTAAAAAA CAAACACTTT TACATTGTAG AATAATCAAG TATTTGAGAC AACCAAAAAT 33190 .......... .......... .......... .......... .......... .......... 1152 AAAAGTAGGA AATTAAACTC TAAATCGAGG ACTTTATATA CAAAATGGTA TAAATATTAT 33250 .......... .......... .......... .......... .......... .......... 1152 TATTTAATTT ACTATCGGGT TATCTGTTAA CCCGTTAAGA AAAAACTTTA AACAGTTGAG 33310 .......... .......... .......... .......... .......... .......... 1152 AACCGATAAC CAGATAACAA AAAAATCAAA ATCGTCATCA AAATCACTAA ACCAATAACC 33370 .......... .......... .......... .......... .......... .......... 1152 CAATAATATA AACCAATAAC TTTTTTATCA GTTCGCTTAT CAATTTCGAT TCGATTTTGA 33430 .......... .......... .......... .......... .......... .......... 1152 ACAGCCCTAA TGAGAAGATA CCAAGAAATA TTATTTAGGA AATTTTCGCT TTTCTCATTT 33490 .......... .......... .......... .......... .......... .......... 1152 AGTTTGAATG GCTTTTAATT TTTGACTTAA AGTTATAAAT TTTATTTTAT GTATCTATTT 33550 .......... .......... .......... .......... .......... .......... 1152 TTATTATTTT AGCTTAAAAT TAATCATTTT TATTTATTTA TCCACCTTTT TGTAAATGTT 33610 .......... .......... .......... .......... .......... .......... 1152 TAAAAAATAT TTTGACTACT TGTAATAATC CAATCCAAAT AGACTCTAAG TTCCTTAAAT 33670 .......... .......... .......... .......... .......... .......... 1152 ATCATAAATT TCTATTTTAG TCTTTATAAT ATTTCGCTAA GCATTTATAA CTTTCAAAAA 33730 .......... .......... .......... .......... .......... .......... 1152 AAGATATCAA AATCACATGT TATAATTATA TAACAATAAT TGAGGGTACG AAAAACACTA 33790 .......... .......... .......... .......... .......... .......... 1152 TTCTTCCAAT ATATTATGGT TAATTGTATT AGATTTTTCT TCAAATAAAC AGTTCTTTAT 33850 .......... .......... .......... .......... .......... .......... 1152 TGTCATCTTT GTTTTTTTAT TGTCAATTTT GATTAAGTGG ATTGACTTTA GCAAAATGAC 33910 .......... .......... .......... .......... .......... .......... 1152 TCGTAAAATA TATTTATTTA AGCTTAAAAA TGTTCCTTAT TTTAAAATCT AGAATGCTGC 33970 .......... .......... .......... .......... .......... .......... 1152 TTAACACGAT TGAAAAGCTT TTGAACGATT ATATTTTGAC CAAAAAAGAC TAAATACATT 34030 .......... .......... .......... .......... .......... .......... 1152 TAACAATAAT TTTTGAAAAT CAAATGTCAA CTTCAAACTA TTAAAAAAAT CAACTTCTTT 34090 .......... .......... .......... .......... .......... .......... 1152 CTTCTTTTTT CACTCGACTA TATTAAAGTC TTGATTAAAT ACAGATTATG CATTGCTGGG 34150 .......... .......... .......... .......... .......... .......... 1152 CATCAAATTT AATTACTTGA AAATTACAAG ATTCTTCAAA TATATAGATT ATATACTCCC 34210 .......... .......... .......... .......... .......... .......... 1152 TTATATATTT CTTTTTACTT GTTCAATTTT GATTTTTTAC TTATCTTTTG TACTTGTCAT 34270 .......... .......... .......... .......... .......... .......... 1152 TTTTGACTAA TCAAGAAAAA AAATATCTTT TTACCAGTTA TAGATTCGAT TTATTTGGAG 34330 .......... .......... .......... .......... .......... .......... 1152 AGTTAATGTT TTTGAAAAAG GTAGAATATC TTTAATGAGT AAATTGACTT GAAATTCTAT 34390 .......... .......... .......... .......... .......... .......... 1152 CTATTTAATT ATAAAAATAA AATGATAAAT TCACTATGTT AATTATTATT TTCTTAATAA 34450 .......... .......... .......... .......... .......... .......... 1152 ATGTGCTCAG TCAAAATTGG ACAAGTAAAT AGAAATGGAG AAAGTAAGTA AAAACTTACA 34510 | |||||| | || .......... CCTAAATTGT ATAA...... .......... .......... .......... 1166 ATGTTTACAT CAAATAAATT GATACATAAT AGTATGTATT TAAATATACA TAGCTATACT 34570 .......... .......... .......... .......... .......... .......... 1166 TTATCATAGT TTTTTGAGAA AAGAGTCAAA CCCGTTAATC TATTCCTGGA TTTTCAACTA 34630 .......... .......... .......... .......... .......... .......... 1166 CATACTCATA CATTGCGGGG TACTTAATAC TCCTCAAAAC ATTTTAAAAA TGAAATATAT 34690 .......... .......... .......... .......... .......... .......... 1166 AGCCTCCTAA AAGGTCACAC TCAGATTTTT GTTAGAGAGT GAACACACTT GCCTGCCACG 34750 .......... .......... .......... .......... .......... .......... 1166 TCATATATAT TAATTTTTAA TAAAAAATTT ATGATGTCTT TCTTTGTTTT ATTTTTCTTT 34810 .......... .......... .......... .......... .......... .......... 1166 TATATTTTTT TCTTTCTATT TCCAGCTATT TTCTTCTTTT CTTTTTCTTT TTCCGTTTTT 34870 .......... .......... .......... .......... .......... .......... 1166 TGCCATTGAA GAGAAAATTT CTAAGTTTTT TATTTATGCT AGTTTTAAAC TTACCTTTAT 34930 .......... .......... .......... .......... .......... .......... 1166 GGAATGTACA GTTATGAAAT TTCAAGTTTT ATTGTTAAAA GGTAAAGTTA TAAATATTTG 34990 .......... .......... .......... .......... .......... .......... 1166 ATAATCTTTC ATTTTTTGCA ATTGAATAAT CTTTTTCCCA CCATTTTCAT CTTCTTGCAA 35050 .......... .......... .......... .......... .......... .......... 1166 ACATCAAAAG TTTTTCAATT TGAAAGGTAA AATTTAGTAA AAATTTTAGT TCTAACTGTT 35110 .......... .......... .......... .......... .......... .......... 1166 TCATCTACTA TTTGATTGAT ACTCAAGTTA TTTTCATGGA TGAATTTGTT GAATTCTTCA 35170 .......... .......... .......... .......... .......... .......... 1166 AATTGAGGTA ATGGATACAT AACAATGGAT CTTTTCATTT CTATTTTCAA AATCACACAT 35230 .......... .......... .......... .......... .......... .......... 1166 GGGTTTCGTT GACAATCCAA AATTCTTTCT GAACTTGAAT TTAAATTATT AAACTAAGCA 35290 .......... .......... .......... .......... .......... .......... 1166 CAAAAAAATC AAGATAAGAA TTTGCTAATC CATTTGGCCA TGTGGTTAGA CATGATGATT 35350 .......... .......... .......... .......... .......... .......... 1166 ATAAATTTTA ATAATATTAA TAAGGAATTG ATTTTCAAAA AATTTCAATT TCGTGCACAA 35410 .......... .......... .......... .......... .......... .......... 1166 ATTGAAAACA AATTCTAGAA TCAAGAAGAA TAATGAAATT CCATGGTGGA TCCAAATTTA 35470 .......... .......... .......... .......... .......... .......... 1166 GAGAAGGTGA GTGATACGAG AGATTTAGTT TATGTTGTTG TGAAGAAGAA AGGAAATAAA 35530 .......... .......... .......... .......... .......... .......... 1166 TAAGAAAAAA GAATAATTAG AAATACACAT ATTTATGAAA AGAAAGTTTT GAAAATAAAA 35590 .......... .......... .......... .......... .......... .......... 1166 TTTATTATTT GTTTTGGTCC TCACTCTCTT TAAGAGAGTG AGATATATTC ACTGTTTCTA 35650 .......... .......... .......... .......... .......... .......... 1166 CATAATCATT TAGAGAGTAA ATTTATATCA GTTTTAAACA GTTCAAGAGG GTAATAACCG 35710 .......... .......... .......... .......... .......... .......... 1166 TGAAATTGGA GTGTCTAGTT GAAATTTCAG GTATAGTTTA GAAGGACTTT ACACCATTTT 35770 .......... .......... .......... .......... .......... .......... 1166 CTCTAAATTT TTTAAAAATT ATTTAACTAC GATAAATTAT ATCTTGATTA AAAAACAGTA 35830 .......... .......... .......... .......... .......... .......... 1166 CGGTAAGTAT TCACCAAGAT GATGAGATGG TAAATGTTGA GTTTATGACT TTATGAGTGT 35890 .......... .......... .......... .......... .......... .......... 1166 GAAAAAAAAT ATAGAAGCGA AATTAGAATA GTAATTATTT TCAAGTATAT TCTTATATAA 35950 .......... .......... .......... .......... .......... .......... 1166 ATAATAAAGT TTAACTATTC TTTTGTAATA TTATTTAATA CTAAAAGAAC ATCTAATAAA 36010 .......... .......... .......... .......... .......... .......... 1166 TTAATAGAGA TAATTTAGTA TTTCTCCATC TCAATTATAT AATTTGACTA GATATAAAAT 36070 .......... .......... .......... .......... .......... .......... 1166 TTAAGTAATA TGAAAAGACG GTGCAATATT TCAAAACTAC ACATATTCAT AAATAAATTT 36130 .......... .......... .......... .......... .......... .......... 1166 TTAAATAAAG GAGTACATCT TAAAAATTTT TTTGTCAAAT ATATACGACC CATTGTGACT 36190 .......... .......... .......... .......... .......... .......... 1166 GAAATGTTAA TGTATAATTA AATATTTGTG GATAATAAAT TTATGTGTCA TTCTTTTTTA 36250 .......... .......... .......... .......... .......... .......... 1166 AAGTAATTAT AAAAGAAAAG TATGAGATAT ATTTTTATTA TTTTTTCACG ATAGACACAA 36310 .......... .......... .......... .......... .......... .......... 1166 AATGCAGTAA AACCACATAT TTATTTTGGA GCGGAGACTG GACAGACTCT TCGGGAGAAA 36370 .......... .......... .......... .......... .......... .......... 1166 CTACGTAATA AAATTTATTT TACTAATCAT ATATATTATT TTAGGAGAAA ATTTACATAA 36430 .......... .......... .......... .......... .......... .......... 1166 TTAAATATAC TTCACTAATA AATATTATTA TATTCATATT TTTAAAATAT TATGTATGAT 36490 .......... .......... .......... .......... .......... .......... 1166 TCGCATGTAT CTGAAATATT AGATACATAA GAAAATATCT ATTGAGATCT ATTATATATT 36550 .......... .......... .......... .......... .......... .......... 1166 AAAAATACAT ATAAATTCAC TTGAATACAA TTTATCTAAA ACAAACTTAA CTTATATATT 36610 .......... .......... .......... .......... .......... .......... 1166 CTAAGGTACA TGTATTTGGA CGTATATAAA CATACCTAAA TCTAATAAAA TTTGAGTGTA 36670 .......... .......... .......... .......... .......... .......... 1166 TGTAAGTTAT TAATTCTCTT AATTATTTTG ATGGGGTATT TGATTTTGGA CCATAGAGTT 36730 .......... .......... .......... .......... .......... .......... 1166 TAATTTTGAC ACGGAAGAAT ATAGGAGAAT ATATCCTAAG GTGATATTCA CACGTATATG 36790 .......... .......... .......... .......... .......... .......... 1166 TGGGCCTTGC ATAGTCCAAA AAATCCTTTG GAGGCACGTC AAGTTTTGAG AAGAAAAAAA 36850 .......... .......... .......... .......... .......... .......... 1166 AACTAAAAAT GACAAAAATT TCATTTTTAA TTTTTTTATT ATTAATATTA TTCTTTTATA 36910 .......... .......... .......... .......... .......... .......... 1166 AATTTTTAAA TTTTTATATT TTTATGCATC AGATTAATGT ATCAATGCAT TAAATTAATA 36970 .......... .......... .......... .......... .......... .......... 1166 TTTTCGTGTA TCAGATTAAT GTATCGTGAA TGAAATGTAC ATTATATTAG TGTATCATGT 37030 .......... .......... .......... .......... .......... .......... 1166 ATAAAATATA ATGTATCTTA CTTAATAATT AATATATCTC GTGTATCAAA TTAATGTATC 37090 .......... .......... .......... .......... .......... .......... 1166 AACACTTATA TTATTGTATC AGTTTGAGGA ATTTCTGTAA TTATAAAATT ATAAGGGACA 37150 .......... .......... .......... .......... .......... .......... 1166 AATAATAATT TTACCTTAAA AATATTTGAT TTCTGTCATT TTCCCAAAAT ATAAATCATA 37210 .......... .......... .......... .......... .......... .......... 1166 AATAGTCATT TTCAAGTCTT CATAATTATA TAAGAAAAAA TTACAAATTA TTATTTTTCA 37270 .......... .......... .......... .......... .......... .......... 1166 ATTTTTCACT AACGCGTATT TTTTAAATGA AAGTATGTTG GGACTTTTTT TTTCCTTGGA 37330 .......... .......... .......... .......... .......... .......... 1166 AAATTCGTAT GTTTGAACCA TTATTTGATT GCATTCAAAA AAAAAAAAAG GAATAATTAA 37390 .......... .......... .......... .......... .......... .......... 1166 AAAAATTAAA ATTTAGTTGT TGTATGTGGA CATATATATT GGTTATAAAT AAAGTTAGCA 37450 .......... .......... .......... .......... .......... .......... 1166 GAAGGTTCTA AACATTTGAG TGAATGAAGA GAAGAAAAGG AATAGACCAA TATTTGCATA 37510 .......... .......... .......... .......... .......... .......... 1166 TATATACTGA AGTTCAATAT TATAGATATT AAAATAAGAT TTGTTTTATT TAACAAGTGT 37570 .......... .......... .......... .......... .......... .......... 1166 ATCGAAGAGA AAAATTTCAC TGACGATATA TGTTAATCAC GAATTTCACA TTTTTTAAAT 37630 .......... .......... .......... .......... .......... .......... 1166 GCAGTCAACT ATATATCATT GTTTGTATTT CTAAATCATC AAATTCTTAG TTGAAAATTG 37690 .......... .......... .......... .......... .......... .......... 1166 GGATGACAAT AGGGTGGGGT GGAGTGGATT GCACGTATAT CTGATTTTAT GATGGTTCAA 37750 .......... .......... .......... .......... .......... .......... 1166 ATTTGATTTT AACTTTTAAC ACGTTATTTG CTCGGTTTCA AAAAGGAAAA TCTAGTTTGA 37810 .......... .......... .......... .......... .......... .......... 1166 CTTGGAACGA AATATAAGAA AAAAAAAGAC TTTTTAATCT ATCATTCTAA ATTAAAGTAA 37870 .......... .......... .......... .......... .......... .......... 1166 TGTACCAAAA TGCTCTTTAA TCTTGTAATC TTAAACATGT TATGTGGAAA GTTAAAGTTA 37930 .......... .......... .......... .......... .......... .......... 1166 AAGTGTTGCC AAAAAAAAAG GGTCATTGTT TTCGAAACAA ACTAAAAAGA AAATAGGGAC 37990 .......... .......... .......... .......... .......... .......... 1166 ATTCTTTTTA AAATGGGAGG GAATATAACA ATGATAAAAC ATTATTTATT AAGATAATTT 38050 .......... .......... .......... .......... .......... .......... 1166 CTTTAAAGCT ACTAAAATAT TTAAGATAAT AAATGAAAAT ACTTCATTAA AAAACGATTT 38110 .......... .......... .......... .......... .......... .......... 1166 CTTACATGTA TCCTAATTGA CCTCAAAAAA TAAAATTTTA AGTCATTATT TATTAAATTA 38170 .......... .......... .......... .......... .......... .......... 1166 ATATAAGTTT ATGAAAAAAT GAATTTATTT TAGTATCAAA TTTAAATAAG AAAAGAAAAT 38230 .......... .......... .......... .......... .......... .......... 1166 ATTATAAAAA TTATGCAGGG AGAAGCAAAG TGGGACGGAT TAATAAAGAA ATTTGTCACG 38290 .......... .......... .......... .......... .......... .......... 1166 CTGGATTAGG GATGTCAAAA TGAACCCAAA CATAGGTAAC CCGTCCAACT CGCCCAAAAT 38350 .......... .......... .......... .......... .......... .......... 1166 TTTAAGGATT GACTTAAAAT AATTTAAATT AGGTTTAATC TCAACACATT CAAGGATTAC 38410 .......... .......... .......... .......... .......... .......... 1166 TCATTTAAAG GGAATCCTCA AATAAGCCTA ATTCAATCTC CAATTTCGAC CCGCTTTAAA 38470 .......... .......... .......... .......... .......... .......... 1166 ACTTTTTATT AAGATATCAT CCTATATGTA AGGTATGAAT TATTATCTAT TTAACAACTT 38530 .......... .......... .......... .......... .......... .......... 1166 TTAAGATTTA TCTATCCATT TGTTACTTTT TTTTATAAAA AAATTCTCGA GCTAAATTTT 38590 .......... .......... .......... .......... .......... .......... 1166 AAATTGTGAT TATAAAAGTT GAATATCAAT ATGTTGAATT TTTTTAGATT AATCCGGTCA 38650 || || || | .......... .......... .......... .......... .......TTT GAT--GGCCT 1177 AATTAGGTGA GTCAAGATCC AACCCGTTTT TAGCCCATTT GAGCCCAGAG TAAACTTGAA 38710 | || | ATTTCG.... .......... .......... .......... .......... .......... 1183 TTGGTCAAGA CCCAACCCGA CTTCTATTTC AACCCATTTT AATAAGGGCA ACTTTCACAT 38770 .......... .......... .......... .......... .......... .......... 1183 ATAACAAACA AAAAATTCAT ATTTGTATGC TATAACAAAC TTTGCGTAAT TGCGCTCCAT 38830 .......... .......... .......... .......... .......... .......... 1183 AGCAAACATA AAACTGTATA ATTTGCTATA CATATACAAT TGTGTAATTC GCTGACCTAA 38890 | || |||||| ||| ||||| || | | || | | | | | | .......CTG CAATTGTATA ATTCGCTATC TTCATTC-AC TGCG-ATTGT GTAATGCACA 1234 ATTGTATAAT TCGCTGGCCT ATTTCGCTGC -A-A-TTGTA T-AATTTGTT TTGCATATAG 38946 || |||||| ||||| || | |||||||||| | | || || | |||||| | ||||||| | ATCGTATAAA TCGCT-GCTT ATTTCGCTGC AATATTTTTA TAAATTTGCT TTGCATACCG 1293 TTGAATTGAA TTAAAATGTA TGTATATTGC ATAATTATAA GTGTATAGCA AGAAGATATA 39006 |||||| ||| |||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| TTGAATCGAA TTAAAATGTA TGTATATTGC ATAATTATAA GTGTATGGCA AGAATATATA 1353 TG-TTTT-TC TCGCTTTATA CAAAAACAGA AACACAATAT ATACACTTCT GTTGTATAAA 39064 || |||| || |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TGTTTTTGTC TCGCTTTATA CAAAAACAAA AACACAATAT ATACACTTCT GTTGTATAAA 1413 GCTAGAGAAA ATTGTATTAC ACTAAAATTG T-TAATTCGC AATTGTATAA TTCGTTGGCC 39123 | |||||||| |||||||| | ||| |||| | |||||| | |||||||||| |||||||||| GTTAGAGAAA ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC 1473 -TTTTCTCTG CAATATTTGA AGTAAAATGT TTGTAAATTG TATAATTAAG TGTATAACAC 39182 ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TTTTTCTCTG CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC 1533 GAAGATATAC ATTTTTGCAT GTGTATATAC AATTTTCTCT TGCTTTATAC AAAACAGAAA 39242 ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| |||| ||||| GAAGATATAT ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA 1593 CAGAA-TTAT ACACTTCTGT GTATAAAGCG AGAGAGGCGA GCGAGAATGG AGAGTGGCGA 39301 ||||| |||| |||||||||| ||||| |||| ||| |||||| |||||||||| |||||||||| CAGAATTTAT ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA 1653 GCGAGATTTT TGGGTGAGAG ACG-CTGGCA AATTTTAGCT AATGTTTGCT ATGGAGCACA 39360 |||||||||| |||| | ||| ||| ||| || || ||||||| || ||||||| |||||||||| GCGAGATTTT TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA 1713 AATAAATCAA ACCCTGGCTA TTCCATTTAA TTTAGCTTAT TAGTTTGCTA TTATATATAA 39420 | |||||||| || || |||| ||||||| | |||| ||| |||||||||| ||||||| || ATTAAATCAA ACTCTAGCTA CTCCATTT-A GTTAGATTAC TAGTTTGCTA TTATATACAA 1772 TTTTCCCTTT TAATAACCCA AATCACCCAT TTGATACCCC TACGCTAGGC AAATCAAAAG 39480 ||||||| TTTTCCCAA. .......... .......... .......... .......... .......... 1781 TTTGAGGGTT AAGCTCAATC ACCTCATACC CAACCTGCTC CTAATAAGCA TCTCTTAAAT 39540 .......... .......... .......... .......... .......... .......... 1781 CAGGAATGTG TCTTAATTTT ACTTAATTAC TTTGTTAATG CAAAACTTGA TTATTATTAT 39600 .......... .......... .......... .......... .......... .......... 1781 TTTTTTAAAA ATGATTTTGC TTAGGTAGGC AATTGCAAAT ATTATTTTTA AATTTGTTTT 39660 .......... .......... .......... .......... .......... .......... 1781 TTTAAAGGCA ATTGTGAATA TTCAAACATA CTAATCAACA TCCCTCAAAA AGGAAATAAC 39720 .......... .......... .......... .......... .......... .......... 1781 ATCTAAGAAA TCCGTCTTAT TCACTATCAT GATGATGGTG TGATATCGTG CATTTTAATA 39780 .......... .......... .......... .......... .......... .......... 1781 TTAAAAACAA AAATATTAGA AAAAATGATA GAAATCGTAT CTCTAAATAT TTTTATTATC 39840 .......... .......... .......... .......... .......... .......... 1781 ATTATCACTT AATAGTTTTA CAAATTTCTA AAATTTCTAA TTTTCACACA TGAAATTAAT 39900 .......... .......... .......... .......... .......... .......... 1781 GTATCAGCGC ATCAAATGAA TGTATCTCGC ACATCAAATT AATCTATCTC ACGCATCAAA 39960 .......... .......... .......... .......... .......... .......... 1781 TTAGTGTATC ATGTATAAAA TTTACATCAG ATTAGTGTAT CATGTATAAA ATGTAATATC 40020 .......... .......... .......... .......... .......... .......... 1781 TTACTTAACG ATTATGTATC TCGCACATCA AATTAATGTA TCAGTTTGTA GGATTTCTAT 40080 .......... .......... .......... .......... .......... .......... 1781 AATTATAAAC TTTTAAAGGA CAAATGATAT TTTACCTTAA AAGTATGTGA TTTCTATCAT 40140 .......... .......... .......... .......... .......... .......... 1781 TTATCCAAAA TATTAAGTGC ATCATAGTGA GTACGTTTAA GGTGGAGAAA ACGATATCAT 40200 .......... .......... .......... .......... .......... .......... 1781 ATATATGATT TTTATAACTC ATATAATCAT AATGACATGT TCTTATTATT TCTTACTAAT 40260 .......... .......... .......... .......... .......... .......... 1781 TGTTTTACAA ATGACGATCC ACATTCATGA CATTTATTTG TAAAAGAAAT CTTACGTACA 40320 .......... .......... .......... .......... .......... .......... 1781 TTTATACGAG ATCATCTCCA ACCCATCTTT ACTTTACTCT TCATTCATTA TATTTGGACA 40380 .......... .......... .......... .......... .......... .......... 1781 GTAAAATAGA CAACAGACAC TCTAACATAT CTTCAAATCA CGCTCTATTC TCTATTCACT 40440 .......... .......... .......... .......... .......... .......... 1781 TTTTTAGCAT TTTATTATTA TTCTATTACT TTCTAATTAA CATATTATTT ACATATAATT 40500 .......... .......... .......... .......... .......... .......... 1781 TCATTAATTA AATCTCTAAT ATTCATATTT CTTTTAATGT AATATAATAT TTTAAAAAAT 40560 .......... .......... .......... .......... .......... .......... 1781 ATTTTTAAAT ATATACTACT TTAATTTCAA ACTAATAAAT TTTAATTTTT CTTTTTTAAT 40620 .......... .......... .......... .......... .......... .......... 1781 TTTCATCAAT AATAAAATTT ATTAATTTTC ATTATAAAGA ATACACAAAA ATAAAATGGC 40680 .......... .......... .......... .......... .......... .......... 1781 AAGATGAAAA ATTTAATTTA AAAATACAAT ACATGATATG ATAATTTAAA TACAAGATAA 40740 .......... .......... .......... .......... .......... .......... 1781 CAATACAATA CATAAATAAT ACAAGATAAC AATACAATAC ATTACTTAAT ATAATAATTT 40800 .......... .......... .......... .......... .......... .......... 1781 AAATACAAGA TAAAATATAA TACATAACAT AATAATCCGG TTGGTCTGTT CCAGATCTAG 40860 .......... .......... .......... .......... .......... .......... 1781 CACTATTCGG AAAAAAAATA CCATACGATT TTGAGAATTA TTGCGATCGT GGTCGTGATT 40920 .......... .......... .......... .......... .......... .......... 1781 GCGTTTGTGA CTGCGGTTGT GATTGTAGAT TTCTTTTTCA AGTATTCCTT GTTGTTCTCG 40980 .......... .......... .......... .......... .......... .......... 1781 TTGCAGGTAG TCACAAATAT TTGTACAAAA ATGCTCATTT TAATCTCTGT AATGCATTAA 41040 .......... .......... .......... .......... .......... .......... 1781 TAGAGCATTT ACAGGAGCAA CATAGTGATT TTTAAAATTG AGTGTTTATA TAATTGTATG 41100 .......... .......... .......... .......... .......... .......... 1781 TCACTTTTAT TTGAATATGT CCCCTAATTT ATGTATTACA TTATATTTTC TTGTAATTTA 41160 .......... .......... .......... .......... .......... .......... 1781 TGTTATTTAA AAATTTAAAA TAAAATACAA TCTTATATCA TATTAAAAAC TATATAAAGT 41220 .......... .......... .......... .......... .......... .......... 1781 AATTATATGA GAAAAAAGAA ATAAAGAATT TATATTATGA AATAAGAAAA TAAGAATGAA 41280 .......... .......... .......... .......... .......... .......... 1781 ATAAAAATAA TAATATAATA TTGAGGAGAG AAAAAAAGAT TTCGTTTTAG AGAGTAAATA 41340 .......... .......... .......... .......... .......... .......... 1781 GAGAATTGGG TTGGAGTTGA TTGTTCGAAA AAATAGAGAA CTCTATTTTG AGAGTTAAAT 41400 .......... .......... .......... .......... .......... .......... 1781 AGAGGATTGA GTTGAAGATG CCGTAAAGAA TGTATATATT TCTTTATTGT GTTGTAAAAA 41460 .......... .......... .......... .......... .......... .......... 1781 AAAATGAGAA CAAAGTGAGA AGTATTATTG TGTTATCTTG AGGTTAGTGT GTGAAAGAGA 41520 .......... .......... .......... .......... .......... .......... 1781 TAACTGAAAT AAGGAAAAAT ATTTTTTTGG TATATTACTT TTGCATTCTT CAACTAATTC 41580 .......... .......... .......... .......... .......... .......... 1781 AACTTGTTTG AGTTATATGA CGTTGTTGGG TTATTGTATC CTAAAAGGGA CAAGTTAAGA 41640 .......... .......... .......... .......... .......... .......... 1781 GTTATACTAT TGAATTGATA TAGATGTATA ATATACCACA ATGATCTTGA ATATCTTTAA 41700 .......... .......... .......... .......... .......... .......... 1781 AGAGGGTGAG ATATACACAC CTCAACCTAA AATTTATTTA TTCATTATTG TTTATTTTAT 41760 .......... .......... .......... .......... .......... .......... 1781 TTTAACTATG GTTTATGACA ATTTATGGTA TATACATCAA CATGATAATC ACAACATATT 41820 .......... .......... .......... .......... .......... .......... 1781 TAACACATTT CAATACAAGT GGCTTCGATG GAGGAAACTA TGCGAAAAAT CAGGTTTATA 41880 .......... .......... .......... .......... .......... .......... 1781 TAATTGGAAT ATGCAAAGAG TAGGTACATG AATGTAAGCA GGATCATCCT CTACTGGTAA 41940 .......... .......... .......... .......... .......... .......... 1781 TAAATTATAA CAATTCATTC AATTAGGGTT CATTAATCAC TCTGTTGCTA ATACCCTCCG 42000 .......... .......... .......... .......... .......... .......... 1781 TCGGCGAATA TATTATTTGA TTATTTGTGT TTGCAGATTC TTATAGCGAC AATTCCTCTT 42060 | || || .......... .......... .......... ......GAGC TTGTA..... .......... 1790 GATGTGAGAA TATTTGACGC AAGTGGATGC TCATTAACTA ATATTACTTT CTTTATATAT 42120 .......... .......... .......... .......... .......... .......... 1790 AATTGGTTGT ATATATAGTG ATCTGACAAC TTGTTTATTT TAGTGAATAT TTGTTAATTA 42180 .......... .......... .......... .......... .......... .......... 1790 TAGTGAACTC AATCTGTTAT TTCCAATTTT AACATATATG AACAAGGACT TGATTAGACC 42240 .......... .......... .......... .......... .......... .......... 1790 ATTTCCAGAA ATATTTTCGT TATACGAGTG ACTATCTTTA ACATTTAGTT CTTCCACCAG 42300 .......... .......... .......... .......... .......... .......... 1790 TCTCTCAAGT GTTCTTTACT TGCTTTATTT GTAGAAATTA CATTTCAGAT GTCATGAAAT 42360 .......... .......... .......... .......... .......... .......... 1790 GTGTTACTTA GATGACACTA GGAGTCAAAA CATCAGTTCT GAAATGTATA TCCTACAAAT 42420 .......... .......... .......... .......... .......... .......... 1790 TAAGCAAGTA AAGAATACTT TAGAGACTGA TGAATGAATT GAATGTTAAA GATAGCCACT 42480 .......... .......... .......... .......... .......... .......... 1790 CGTATTATGA AAATATTTCT GGAAATGGCC TGATCAAGCC CTTGGCTTTT CATATTTGTT 42540 .......... .......... .......... .......... .......... .......... 1790 AAAATTAGAA ATAATAGATT GAATTCACGA TAATTAACAA ATATTCACAA AAATAAACAA 42600 .......... .......... .......... .......... .......... .......... 1790 GTTATCATAT CGTTATATTC ACAACTAATT ATATATTTTT TAAAAAAGTA ATATTAGCTA 42660 .......... .......... .......... .......... .......... .......... 1790 ATGCTCATCC ACTTACATAA GATTTCCTCA CATCAAGAGG AACTGTCGCT ATCAGAATCT 42720 .......... .......... .......... .......... .......... .......... 1790 ACAAACATAA ATAATCAAAT AATTCATTCT TGGATGAAGA GTATTAGCAA CAAAATGATG 42780 .......... .......... .......... .......... .......... .......... 1790 AATGAACCCT AATTGAATGA ATCATTGTAA TTTATTACCA CTAGATGATG ATCATGCTTG 42840 .......... .......... .......... .......... .......... .......... 1790 CATTATGTGT CTCTCCCCCA CCTTAAACAT GAGTACTTGT ATGCATTTAC ATATTTATAA 42900 .......... .......... .......... .......... .......... .......... 1790 AGCAAAGAGC CACAAGAGAA TATATATTAC ATTATGTATA TACAATAAAG ACGATCGAAT 42960 .......... .......... .......... .......... .......... .......... 1790 TCTTTTAATG CATCAACAAT CTTTGAACCC GAACTCTACA AAATGAAGTG AAACAAAGAA 43020 .......... .......... .......... .......... .......... .......... 1790 ATGCTCATCT CCAATCTACA CAAAATAACT TAAAAAGCTG AAAGAAACTC AATGTAGCTT 43080 .......... .......... .......... .......... .......... .......... 1790 TACTCTTGCT CTTGTTGTAA TTTATGACAA AGTTTTAAGC TCCCACATAG TTTCTGCATC 43140 .......... .......... .......... .......... .......... .......... 1790 AATGCTGCAG TTGCTTTGTA GAAATTTCAC ATCAAGAATC AATTCAAAGT TCTAATTTTT 43200 .......... .......... .......... .......... .......... .......... 1790 TAAACACCAT AAAACATTAA GAAGGAAAGA CGGTTGGGGG AGGGGTTCAA ACCTGAGACT 43260 .......... .......... .......... .......... .......... .......... 1790 CTCAGTAGAC TGCAAAATGT TGCGGACAAA AATTGCCTGG TCGCTTGGTT GCTCGCCGAT 43320 .......... .......... .......... .......... .......... .......... 1790 TGAAATTGGT GGTCTTAGCG CGCTTGTTGA AGCTCATCAT TTTTATCCAG CTGCTGGTTC 43380 .......... .......... .......... .......... .......... .......... 1790 TGCAGCTGCT GCTGGATGAC GTTGTTTGTT GTTTGTTCTT CGGGTTGCAC TGTCTGTAAA 43440 .......... .......... .......... .......... .......... .......... 1790 GAAAAATAGA GAGGAGGGCA AAAGA 43465 ||||| || || || || | ||||| .TAAAATGGA GA-GAAGGAA AAAGA 1813 hqPGS_C08SLe0082C24.1+_SGN-U315404+ (38838 39429,42037 42045,43442 43465) ******************************************************************************** EST sequence 7 +strand 1136 n (File: SGN-U325194+) 1 TCGCTTATAG ACTCCTATGG AAGAAGACAA AAGTAGTAAC ACCATTGAAC CCCAAAAGGG 61 AGCTCAAGAA CTCCCTTTTG ATTGGCCCAA ACAAGCATGG ACACATTTCG AATTAGTTCG 121 TCAAAAATCC CCATTAATTC AATGTATAAC CAACTTCGTT TCAATGGATT TCATGGCCAA 181 TACTCTGTTA TCCGCCGGCG CATCACCGGC GATGATTCAT TCCGTTGAAG AAATCCCAGA 241 ATTTACTCCA AAAGCCCTTG GAGTTTGCAT AAATGCCGGA ACCCTCACTC CGGACTGGCT 301 ACCCGGTATG AAATTAGCGG CACAAGTGGC GAATCAATCG AAAAAACCTT GGGTGCTTGA 361 TCCTGTTGCT GCCGGTGGGT CAAGTTTCCG GTTAAAGGCG TGTTTGGAGC TACTTGCTTT 421 AAAACCTAGT GTTGTTAGAG GCAATGGGTC TGAGATTCTT GCTCTTTTCA AGGGTTGTGT 481 TGACTCAAAT TCCAAGGGTG TGGATAGTGT ACATGGTTCA AGTGATGCTG TTGAAGCTGC 541 TAAGTCCATC GCTCAACAAA GTGGTAGTGT AGTCGCTGTT TCTGGAGCTG TTGACTATAT 601 CACAGACGGT GATAGGGTTG TTTGTGTTCA CAATGGGGTG CCTATGTTGC AAAAGATTAC 661 TGCATCTGGA TGTTCAGTCA CTGCCCTCAT TGCTGCCTTT GTCGCTGTTG ATCCATCCCA 721 TGCTGTGGAA GCAACAGCTT CTGCATTGGC TATATTTGGT GTCGCAAGTG AAACAGGGAT 781 GGACATGGCT AGAGGTCCAG CTTCACTGCG GACACTGTTG ATTGATTCGT TATATGGACT 841 TGGGGAAGCT ACTGCACTTA GTCGAGTAAG AATCAACCAC CTTTAATGCT TTTAGACGAG 901 AAATCAATGT GTCCATTTCA TTTAAATCTA ACTCTCATTT ATTTTTGGGC AACTTTTTTC 961 ACATACAGCA AACAAAAAAT TCATATTTGT ATGCTATAGC AAACTTCGCA TAATTGCGTT 1021 CCATAGCAAA CATAAAATTG TATAATTCGC TATACATATA CAATTGTATA ATTCGCTATC 1081 CTATTTCACT GCAATTGTAT AATGCACAAT TGTATAATTC GCTGCCTAAA AAAAAA Predicted gene structure (within gDNA segment 27895 to 40173): Exon 1 28946 28956 ( 11 n); cDNA 805 814 ( 10 n); score: 0.636 Intron 1 28957 29891 ( 935 n); Pd: 0.421 (s: 0), Pa: 0.697 (s: 0) Exon 2 29892 29929 ( 38 n); cDNA 815 849 ( 35 n); score: 0.632 Intron 2 29930 30346 ( 417 n); Pd: 0.307 (s: 0), Pa: 0.000 (s: 0) Exon 3 30347 30354 ( 8 n); cDNA 850 857 ( 8 n); score: 0.875 Intron 3 30355 35471 (5117 n); Pd: 0.260 (s: 0), Pa: 0.461 (s: 0) Exon 4 35472 35476 ( 5 n); cDNA 858 861 ( 4 n); score: 0.400 Intron 4 35477 35828 ( 352 n); Pd: 0.353 (s: 0), Pa: 0.982 (s: 0) Exon 5 35829 35848 ( 20 n); cDNA 862 881 ( 20 n); score: 0.600 Intron 5 35849 36207 ( 359 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 6 36208 36252 ( 45 n); cDNA 882 926 ( 45 n); score: 0.667 Intron 6 36253 36317 ( 65 n); Pd: 0.000 (s: 0.67), Pa: 0.543 (s: 0) Exon 7 36318 36340 ( 23 n); cDNA 927 948 ( 22 n); score: 0.652 Intron 7 36341 37634 (1294 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 8 37635 37642 ( 8 n); cDNA 949 956 ( 8 n); score: 0.750 Intron 8 37643 38762 (1120 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.94) Exon 9 38763 38889 ( 127 n); cDNA 957 1083 ( 127 n); score: 0.913 MATCH C08SLe0082C24.1+ SGN-U325194+ 0.913 285 0.251 C PGS_C08SLe0082C24.1+_SGN-U325194+ (28946 28956,29892 29929,30347 30354,35472 35476,35829 35848,36208 36252,36318 36340,37635 37642,38763 38889) Alignment (genomic DNA sequence = upper lines): ACAGAGTACA GGCAAGCACC CAGAAACGGC TATAATTCTG ACACGTCATT GCACAAGTCA 29005 || | | ||| ACTGCGGACA -......... .......... .......... .......... .......... 814 CCAATAGGTT TTTTAATCAA TTTTTTTAAA AAAAATAGGC CAAAGATAAA AACATTAATG 29065 .......... .......... .......... .......... .......... .......... 814 AGGATATGGA GGTGAGAAGT AAAAGATAAT TGCATAATAT CTAGTTTTTC TTATAATATT 29125 .......... .......... .......... .......... .......... .......... 814 ATTATTAATT CTTCTACTTT CTTAGACTTC AATATTATTA TTATGTGTTG CTTTTTTTAC 29185 .......... .......... .......... .......... .......... .......... 814 TTTTTTTCTC TTATTCTATT GTTTGTTGTT ATTATTGATA TTTTCTATTA AACTCCTTTT 29245 .......... .......... .......... .......... .......... .......... 814 CCTAGTTATT TGGTATTGTT TTATTTGAGT TGTAAATTTA TTTAAATAAC TTATAAAGTA 29305 .......... .......... .......... .......... .......... .......... 814 ATAATAAGAA TGTTTACACC CATCTTCTTA AATGAGATTT GCTAAATATG TTAATATATA 29365 .......... .......... .......... .......... .......... .......... 814 CACATAAAGA ATAAAATTTA ACATTAAGAA TCAAAGCCAG GTCTTGATTT AATAAGGTAG 29425 .......... .......... .......... .......... .......... .......... 814 ATTTTTAGGT TTTTATCAAT AAAATTATCG TATATTTAAA ATTATCTAAG TTTAATACAT 29485 .......... .......... .......... .......... .......... .......... 814 ATAATTTTAT TAAAATTATA TAGGCCACTT TTTTTTTCTC TATATGCCAC TAATAAGAAT 29545 .......... .......... .......... .......... .......... .......... 814 GGAATCATGT TTTTTTTTTT TGGGTATGAT TTTGATATAC AAAATTAATT TTTTTAATAG 29605 .......... .......... .......... .......... .......... .......... 814 AAATATAAAG TAGAAATTGA CACATAAGAT TCAATATAAT CCAATCTATA TTTCAATATT 29665 .......... .......... .......... .......... .......... .......... 814 TTGGAGCAAT TCATGAGATC GTATATTCTT TGTTACTATA ATATTTTACA ATTTTAAAAA 29725 .......... .......... .......... .......... .......... .......... 814 TAATTATATT TATATAATTT TATAATCCTC ACATAATTAA TAATTACATA CAACGCAAAA 29785 .......... .......... .......... .......... .......... .......... 814 AAACAGCTCA AGATTAATAT ATACAACAAA TTAATGGAAA AATTCAACAC TATCTATTAA 29845 .......... .......... .......... .......... .......... .......... 814 TTATCTATAT ATGAATGAAT AGACAGTATT TTTTTTTTTT TTGGAGATAT TGTTTTCACT 29905 | | || || | | .......... .......... .......... .......... ......CTGT TG-ATTGA-T 826 TCAATGATAT CCAATTGGGG CAGGGTAGCC CTTCAACTCA TGCCCTTGAC ACTGTATATC 29965 || | |||| | |||||| || TC-GTTATAT GGACTTGGGG AAGC...... .......... .......... .......... 849 CTGTGTAACA AAAAAAAAAT TTAAATTTTT AAAAAACACA AATAGTTCTT TTTAATACTA 30025 .......... .......... .......... .......... .......... .......... 849 TAAAAATTCG AACGTACAAA ATTAAAAGTA GAAAAATCTC ACCGAAGCAA AGTGATTTAG 30085 .......... .......... .......... .......... .......... .......... 849 GTCCCGATGA TGTGCCTCAT CGGCCCTAAT AACAGTAACA ACATCTTTTA GCGTTGCATC 30145 .......... .......... .......... .......... .......... .......... 849 GGCCGGCAAA CGCCAATAAT CAATAGCAAT AGCCGGTGCA GGCGAGTTCT CGAAAAGTCC 30205 .......... .......... .......... .......... .......... .......... 849 CTTTTCTATA TCGATCAAAA ACTCTGTATA CGAATTTACT GCTTCTTCTT CTAAGTAACC 30265 .......... .......... .......... .......... .......... .......... 849 AACAATTCGA TGAGCCAATT TTGGGGACGC TAAATAGGCA ATGAAATAGG CATTGACAAA 30325 .......... .......... .......... .......... .......... .......... 849 TACGCCTTGA ACTGCAAAGA CTAATGCACG TTCGTACCAT TTCGGATTTG ATAATTCGAT 30385 || ||||| .......... .......... .TACTGCAC. .......... .......... .......... 857 AAAGGTCATG AGATGCATCC GTTCGTTCTC TGCTTCTTCG AGGAGGGCTT TGATCCAACC 30445 .......... .......... .......... .......... .......... .......... 857 ACCACTGTGC TCGAATCGAC GGAGGGATTT ACAGTGGAGG AGCATACCAC CTACCATGCC 30505 .......... .......... .......... .......... .......... .......... 857 TGGCACGGCT GCAACCGTTT CTAGTAACAT AGCATGACAC ATGTGACGTC TCTGCGAAAT 30565 .......... .......... .......... .......... .......... .......... 857 TAAATATACT GTTAGTGTAT ATAAATTAAA CGTTATAATA ATGTATAGGG TTATAGTAGG 30625 .......... .......... .......... .......... .......... .......... 857 TAATGGTCCC TTGTGTTTTT TTGGAGTTTC AATATACTTT TCATTAATTT TGGTCTTTTA 30685 .......... .......... .......... .......... .......... .......... 857 AATAAGTTCA CTAAAATTGA GTATGAACAA TTTTTGTTCA ATCATTTAAA TGAATATATA 30745 .......... .......... .......... .......... .......... .......... 857 TTAATTAGAT TTGATAGAAA CTTATGAGAG GGAAAAAGAG TTTCTGAAGG AATTTATATT 30805 .......... .......... .......... .......... .......... .......... 857 TAGAGGTCTA ATTTCTACAA TTATACTATT TTTTTTTAGA CTCCGAATTT CTAATCTTGT 30865 .......... .......... .......... .......... .......... .......... 857 TTATTTATTT TTGATGTGTA ATGGAATTTC TTTTATATAG CAATTGTTAC AATTTTATGG 30925 .......... .......... .......... .......... .......... .......... 857 GACTTTCTTA ACAAATTTCT AGTTATATTT TATCCCCTGG TCGATTTTTT TAAATAACTT 30985 .......... .......... .......... .......... .......... .......... 857 TAAGAGATTC TCTACGACGA GCTAGGAAAT CGTACATATA ACCTCATTAT GAATTACGAT 31045 .......... .......... .......... .......... .......... .......... 857 ATTTTTGAGC GTTTAAATTT TAATTTTTCA TTCGTATTAA TCTATAAATA TTTTTGTGAT 31105 .......... .......... .......... .......... .......... .......... 857 ATGACTTTAA ATCGATTTTT TTGAAACAAA ATTCCCTTTT AACACTTTGT TTGGATCATT 31165 .......... .......... .......... .......... .......... .......... 857 GTTACCGATT GTTTCATAAT GTATTGTATT GTATTGTACT CTATTGTACT GTATTGTATG 31225 .......... .......... .......... .......... .......... .......... 857 GTAGATACAA TGTTTGGCTA GACTGTATTG TATGTTGTTG TTTAATAACA TTTTAATTGT 31285 .......... .......... .......... .......... .......... .......... 857 TTGGTTTGAT AGTACGTACT GTATTGTAAT TTATAAATTT ACTAAAATAT CCTAATTATT 31345 .......... .......... .......... .......... .......... .......... 857 CTATGGTAGG AGGTTTTAGT AGATTCAAAT AATTAAGATA AAGGGTAAAA TAGTATTTTA 31405 .......... .......... .......... .......... .......... .......... 857 AAATATTATG TAAATATATA ATTGAAAAAG GATATTAAGT AACAATGGGA ACACACCAAA 31465 .......... .......... .......... .......... .......... .......... 857 TTGAATGTTC TATAAAATAG TGGTTTTCAT TATTACTTAA CAACCAAATT TTATAATACA 31525 .......... .......... .......... .......... .......... .......... 857 ATACAATACA TTTTAAGTAA TAATCCAAAC AAATATTGTA AGTATAATAA TGTTACTGTA 31585 .......... .......... .......... .......... .......... .......... 857 CAATACAGTA GATAACAATG ATCCAGATAT AGTGTAAATA TATCTGAGAT AGTTTGTTAA 31645 .......... .......... .......... .......... .......... .......... 857 ATTTTTTAAA TGAAAACCAA AGATGCTCTT TTTTAATTTA TTATTAAACA ATATATGTAA 31705 .......... .......... .......... .......... .......... .......... 857 AGGAGTATTT TAAACATATC GCGCCGATAC CATTTTGTCA TTTTCTCCAA CTAGTGCGGT 31765 .......... .......... .......... .......... .......... .......... 857 AAGATCACGT TGTCTTTTTT TTTTTTTTAA TTTAATTATT GGGATCATTA TTTAGTTTAA 31825 .......... .......... .......... .......... .......... .......... 857 TTTAATATTG AAAAAATCTT GTTGCAATAA TTTATAGTAG TAGTAAAAAA TCATTTAACT 31885 .......... .......... .......... .......... .......... .......... 857 AAAATTATTT TTTTTAATAA TAAGAGAGTC AAGATGTTGA CCTGGAAAAA CAAGTAGGTG 31945 .......... .......... .......... .......... .......... .......... 857 GGGTACTTTA AAGATTGGAC TGTCCAATAA GCAAACTTGT CCATAAAATT GGTAGGCATA 32005 .......... .......... .......... .......... .......... .......... 857 TGGTGCTTCT CCACATCAAT TGAAATATCA GCTGAGTACG TCTCCCATGG CTGTCAAAAC 32065 .......... .......... .......... .......... .......... .......... 857 CAAAAAAAAA AAAAAAATAT ATATATATAT ATATATATAT ATAATTAAAA TTATGAGTTT 32125 .......... .......... .......... .......... .......... .......... 857 AAGTTATATA TAGTATCAAT ATAAAATATT TTTACACGAT CAAGTTATCT AAAAGAGATT 32185 .......... .......... .......... .......... .......... .......... 857 TAGTTATAGC CTTATAAGTA AGTCATAATT TAGAAACATA CTTCCTCTGT CTCGTTTCAG 32245 .......... .......... .......... .......... .......... .......... 857 AGAGAGTACA AAAATATGTC ATTCTTTCTG ACTAAAAAAG AAAGTCAATC ATATAAAACG 32305 .......... .......... .......... .......... .......... .......... 857 GAATAAAGGG AATATATTAT TCGCGTACGT ACCCTGAAGC TGTTCCACTT CCATGGTGTA 32365 .......... .......... .......... .......... .......... .......... 857 CCATCTTCCT TGGAGATTTT GGGAGGATCC ACCCCCCAAT AGCTAACAAT TTTCTTAGCC 32425 .......... .......... .......... .......... .......... .......... 857 TTGTCGCCGG CGGCGTTGGT TGCATCAGTG TGTGATGGTT GATTATGTGT TTTTTGTTCT 32485 .......... .......... .......... .......... .......... .......... 857 TCTTTTGTTT TACTAGAAGT ATTCATATTA CTCCAATGAC GAATTTGTAC CATGCCTCCA 32545 .......... .......... .......... .......... .......... .......... 857 CGGGGCAAAA ATTCGCCCCG TAATTGTCTC ATAAGTAATC CAGATATTTT CATTGCTGCA 32605 .......... .......... .......... .......... .......... .......... 857 TTACGATTCA TATTCAAATG ATTGAAATTT AACAAAATAA GAAATGTTGA TGATGTTTTT 32665 .......... .......... .......... .......... .......... .......... 857 TTATGGTGAA AAATTGTTGG TTTATATATA GTGTTTAAGT TGAAAAAAGT GGAGGAATAT 32725 .......... .......... .......... .......... .......... .......... 857 GATGTAATAT ATGAAAGAGT ATGAGAAAGT TGTTTGGAAT TGACTTTTCC ATAGTATTGG 32785 .......... .......... .......... .......... .......... .......... 857 GAGAGTGATA TTGCTTCTTG GTGGTGGCCA ACTTTTATTT TACTTTGACT TTTAGTTATG 32845 .......... .......... .......... .......... .......... .......... 857 GAAATTTTCA TAATTTCTTG GAGGAACTAA TATGAGAAGT AGGGTGGTAT ATCGGCCGGT 32905 .......... .......... .......... .......... .......... .......... 857 TTGGTTTGGT TTTGAAGTTT ATCGGGTTGG CTTATTGGTT ATCGATTTGT AGAGATGCTA 32965 .......... .......... .......... .......... .......... .......... 857 AATCGTTATA GAACCATTAA GATATTAGTT TATCGGTTAT TGATCGTTAT CGGTTCGGTT 33025 .......... .......... .......... .......... .......... .......... 857 ATCGATTTAA TCGTTAAGAT TTGACAAAAA AAAAACATTA AAAATCAATT AGAAACAAGG 33085 .......... .......... .......... .......... .......... .......... 857 GGACTAACTA AATAAATCAT GCACTTGAGT TCACAAGTTA CATCTTGCTA AAAAACAAAC 33145 .......... .......... .......... .......... .......... .......... 857 ACTTTTACAT TGTAGAATAA TCAAGTATTT GAGACAACCA AAAATAAAAG TAGGAAATTA 33205 .......... .......... .......... .......... .......... .......... 857 AACTCTAAAT CGAGGACTTT ATATACAAAA TGGTATAAAT ATTATTATTT AATTTACTAT 33265 .......... .......... .......... .......... .......... .......... 857 CGGGTTATCT GTTAACCCGT TAAGAAAAAA CTTTAAACAG TTGAGAACCG ATAACCAGAT 33325 .......... .......... .......... .......... .......... .......... 857 AACAAAAAAA TCAAAATCGT CATCAAAATC ACTAAACCAA TAACCCAATA ATATAAACCA 33385 .......... .......... .......... .......... .......... .......... 857 ATAACTTTTT TATCAGTTCG CTTATCAATT TCGATTCGAT TTTGAACAGC CCTAATGAGA 33445 .......... .......... .......... .......... .......... .......... 857 AGATACCAAG AAATATTATT TAGGAAATTT TCGCTTTTCT CATTTAGTTT GAATGGCTTT 33505 .......... .......... .......... .......... .......... .......... 857 TAATTTTTGA CTTAAAGTTA TAAATTTTAT TTTATGTATC TATTTTTATT ATTTTAGCTT 33565 .......... .......... .......... .......... .......... .......... 857 AAAATTAATC ATTTTTATTT ATTTATCCAC CTTTTTGTAA ATGTTTAAAA AATATTTTGA 33625 .......... .......... .......... .......... .......... .......... 857 CTACTTGTAA TAATCCAATC CAAATAGACT CTAAGTTCCT TAAATATCAT AAATTTCTAT 33685 .......... .......... .......... .......... .......... .......... 857 TTTAGTCTTT ATAATATTTC GCTAAGCATT TATAACTTTC AAAAAAAGAT ATCAAAATCA 33745 .......... .......... .......... .......... .......... .......... 857 CATGTTATAA TTATATAACA ATAATTGAGG GTACGAAAAA CACTATTCTT CCAATATATT 33805 .......... .......... .......... .......... .......... .......... 857 ATGGTTAATT GTATTAGATT TTTCTTCAAA TAAACAGTTC TTTATTGTCA TCTTTGTTTT 33865 .......... .......... .......... .......... .......... .......... 857 TTTATTGTCA ATTTTGATTA AGTGGATTGA CTTTAGCAAA ATGACTCGTA AAATATATTT 33925 .......... .......... .......... .......... .......... .......... 857 ATTTAAGCTT AAAAATGTTC CTTATTTTAA AATCTAGAAT GCTGCTTAAC ACGATTGAAA 33985 .......... .......... .......... .......... .......... .......... 857 AGCTTTTGAA CGATTATATT TTGACCAAAA AAGACTAAAT ACATTTAACA ATAATTTTTG 34045 .......... .......... .......... .......... .......... .......... 857 AAAATCAAAT GTCAACTTCA AACTATTAAA AAAATCAACT TCTTTCTTCT TTTTTCACTC 34105 .......... .......... .......... .......... .......... .......... 857 GACTATATTA AAGTCTTGAT TAAATACAGA TTATGCATTG CTGGGCATCA AATTTAATTA 34165 .......... .......... .......... .......... .......... .......... 857 CTTGAAAATT ACAAGATTCT TCAAATATAT AGATTATATA CTCCCTTATA TATTTCTTTT 34225 .......... .......... .......... .......... .......... .......... 857 TACTTGTTCA ATTTTGATTT TTTACTTATC TTTTGTACTT GTCATTTTTG ACTAATCAAG 34285 .......... .......... .......... .......... .......... .......... 857 AAAAAAAATA TCTTTTTACC AGTTATAGAT TCGATTTATT TGGAGAGTTA ATGTTTTTGA 34345 .......... .......... .......... .......... .......... .......... 857 AAAAGGTAGA ATATCTTTAA TGAGTAAATT GACTTGAAAT TCTATCTATT TAATTATAAA 34405 .......... .......... .......... .......... .......... .......... 857 AATAAAATGA TAAATTCACT ATGTTAATTA TTATTTTCTT AATAAATGTG CTCAGTCAAA 34465 .......... .......... .......... .......... .......... .......... 857 ATTGGACAAG TAAATAGAAA TGGAGAAAGT AAGTAAAAAC TTACAATGTT TACATCAAAT 34525 .......... .......... .......... .......... .......... .......... 857 AAATTGATAC ATAATAGTAT GTATTTAAAT ATACATAGCT ATACTTTATC ATAGTTTTTT 34585 .......... .......... .......... .......... .......... .......... 857 GAGAAAAGAG TCAAACCCGT TAATCTATTC CTGGATTTTC AACTACATAC TCATACATTG 34645 .......... .......... .......... .......... .......... .......... 857 CGGGGTACTT AATACTCCTC AAAACATTTT AAAAATGAAA TATATAGCCT CCTAAAAGGT 34705 .......... .......... .......... .......... .......... .......... 857 CACACTCAGA TTTTTGTTAG AGAGTGAACA CACTTGCCTG CCACGTCATA TATATTAATT 34765 .......... .......... .......... .......... .......... .......... 857 TTTAATAAAA AATTTATGAT GTCTTTCTTT GTTTTATTTT TCTTTTATAT TTTTTTCTTT 34825 .......... .......... .......... .......... .......... .......... 857 CTATTTCCAG CTATTTTCTT CTTTTCTTTT TCTTTTTCCG TTTTTTGCCA TTGAAGAGAA 34885 .......... .......... .......... .......... .......... .......... 857 AATTTCTAAG TTTTTTATTT ATGCTAGTTT TAAACTTACC TTTATGGAAT GTACAGTTAT 34945 .......... .......... .......... .......... .......... .......... 857 GAAATTTCAA GTTTTATTGT TAAAAGGTAA AGTTATAAAT ATTTGATAAT CTTTCATTTT 35005 .......... .......... .......... .......... .......... .......... 857 TTGCAATTGA ATAATCTTTT TCCCACCATT TTCATCTTCT TGCAAACATC AAAAGTTTTT 35065 .......... .......... .......... .......... .......... .......... 857 CAATTTGAAA GGTAAAATTT AGTAAAAATT TTAGTTCTAA CTGTTTCATC TACTATTTGA 35125 .......... .......... .......... .......... .......... .......... 857 TTGATACTCA AGTTATTTTC ATGGATGAAT TTGTTGAATT CTTCAAATTG AGGTAATGGA 35185 .......... .......... .......... .......... .......... .......... 857 TACATAACAA TGGATCTTTT CATTTCTATT TTCAAAATCA CACATGGGTT TCGTTGACAA 35245 .......... .......... .......... .......... .......... .......... 857 TCCAAAATTC TTTCTGAACT TGAATTTAAA TTATTAAACT AAGCACAAAA AAATCAAGAT 35305 .......... .......... .......... .......... .......... .......... 857 AAGAATTTGC TAATCCATTT GGCCATGTGG TTAGACATGA TGATTATAAA TTTTAATAAT 35365 .......... .......... .......... .......... .......... .......... 857 ATTAATAAGG AATTGATTTT CAAAAAATTT CAATTTCGTG CACAAATTGA AAACAAATTC 35425 .......... .......... .......... .......... .......... .......... 857 TAGAATCAAG AAGAATAATG AAATTCCATG GTGGATCCAA ATTTAGAGAA GGTGAGTGAT 35485 | | .......... .......... .......... .......... ......-TTA G......... 861 ACGAGAGATT TAGTTTATGT TGTTGTGAAG AAGAAAGGAA ATAAATAAGA AAAAAGAATA 35545 .......... .......... .......... .......... .......... .......... 861 ATTAGAAATA CACATATTTA TGAAAAGAAA GTTTTGAAAA TAAAATTTAT TATTTGTTTT 35605 .......... .......... .......... .......... .......... .......... 861 GGTCCTCACT CTCTTTAAGA GAGTGAGATA TATTCACTGT TTCTACATAA TCATTTAGAG 35665 .......... .......... .......... .......... .......... .......... 861 AGTAAATTTA TATCAGTTTT AAACAGTTCA AGAGGGTAAT AACCGTGAAA TTGGAGTGTC 35725 .......... .......... .......... .......... .......... .......... 861 TAGTTGAAAT TTCAGGTATA GTTTAGAAGG ACTTTACACC ATTTTCTCTA AATTTTTTAA 35785 .......... .......... .......... .......... .......... .......... 861 AAATTATTTA ACTACGATAA ATTATATCTT GATTAAAAAA CAGTACGGTA AGTATTCACC 35845 | ||| || || ||| .......... .......... .......... .......... ...TCGAGTA AGAATCAACC 878 AAGATGATGA GATGGTAAAT GTTGAGTTTA TGACTTTATG AGTGTGAAAA AAAATATAGA 35905 | ACC....... .......... .......... .......... .......... .......... 881 AGCGAAATTA GAATAGTAAT TATTTTCAAG TATATTCTTA TATAAATAAT AAAGTTTAAC 35965 .......... .......... .......... .......... .......... .......... 881 TATTCTTTTG TAATATTATT TAATACTAAA AGAACATCTA ATAAATTAAT AGAGATAATT 36025 .......... .......... .......... .......... .......... .......... 881 TAGTATTTCT CCATCTCAAT TATATAATTT GACTAGATAT AAAATTTAAG TAATATGAAA 36085 .......... .......... .......... .......... .......... .......... 881 AGACGGTGCA ATATTTCAAA ACTACACATA TTCATAAATA AATTTTTAAA TAAAGGAGTA 36145 .......... .......... .......... .......... .......... .......... 881 CATCTTAAAA ATTTTTTTGT CAAATATATA CGACCCATTG TGACTGAAAT GTTAATGTAT 36205 .......... .......... .......... .......... .......... .......... 881 AATTAAATAT TTGTGGATAA TAAATTTATG TGTCATTCTT TTTTAAAGTA ATTATAAAAG 36265 || ||| || | || | |||| ||| |||| | | |||||| ..TTTAATGC TTTTAGACGA GAAATCAATG TGTCCATTTC ATTTAAA... .......... 926 AAAAGTATGA GATATATTTT TATTATTTTT TCACGATAGA CACAAAATGC AGTAAAACCA 36325 | || | .......... .......... .......... .......... .......... ..TCTAA-CT 933 CATATTTATT TTGGAGCGGA GACTGGACAG ACTCTTCGGG AGAAACTACG TAATAAAATT 36385 | ||||||| || | CTCATTTATT TTTGG..... .......... .......... .......... .......... 948 TATTTTACTA ATCATATATA TTATTTTAGG AGAAAATTTA CATAATTAAA TATACTTCAC 36445 .......... .......... .......... .......... .......... .......... 948 TAATAAATAT TATTATATTC ATATTTTTAA AATATTATGT ATGATTCGCA TGTATCTGAA 36505 .......... .......... .......... .......... .......... .......... 948 ATATTAGATA CATAAGAAAA TATCTATTGA GATCTATTAT ATATTAAAAA TACATATAAA 36565 .......... .......... .......... .......... .......... .......... 948 TTCACTTGAA TACAATTTAT CTAAAACAAA CTTAACTTAT ATATTCTAAG GTACATGTAT 36625 .......... .......... .......... .......... .......... .......... 948 TTGGACGTAT ATAAACATAC CTAAATCTAA TAAAATTTGA GTGTATGTAA GTTATTAATT 36685 .......... .......... .......... .......... .......... .......... 948 CTCTTAATTA TTTTGATGGG GTATTTGATT TTGGACCATA GAGTTTAATT TTGACACGGA 36745 .......... .......... .......... .......... .......... .......... 948 AGAATATAGG AGAATATATC CTAAGGTGAT ATTCACACGT ATATGTGGGC CTTGCATAGT 36805 .......... .......... .......... .......... .......... .......... 948 CCAAAAAATC CTTTGGAGGC ACGTCAAGTT TTGAGAAGAA AAAAAAACTA AAAATGACAA 36865 .......... .......... .......... .......... .......... .......... 948 AAATTTCATT TTTAATTTTT TTATTATTAA TATTATTCTT TTATAAATTT TTAAATTTTT 36925 .......... .......... .......... .......... .......... .......... 948 ATATTTTTAT GCATCAGATT AATGTATCAA TGCATTAAAT TAATATTTTC GTGTATCAGA 36985 .......... .......... .......... .......... .......... .......... 948 TTAATGTATC GTGAATGAAA TGTACATTAT ATTAGTGTAT CATGTATAAA ATATAATGTA 37045 .......... .......... .......... .......... .......... .......... 948 TCTTACTTAA TAATTAATAT ATCTCGTGTA TCAAATTAAT GTATCAACAC TTATATTATT 37105 .......... .......... .......... .......... .......... .......... 948 GTATCAGTTT GAGGAATTTC TGTAATTATA AAATTATAAG GGACAAATAA TAATTTTACC 37165 .......... .......... .......... .......... .......... .......... 948 TTAAAAATAT TTGATTTCTG TCATTTTCCC AAAATATAAA TCATAAATAG TCATTTTCAA 37225 .......... .......... .......... .......... .......... .......... 948 GTCTTCATAA TTATATAAGA AAAAATTACA AATTATTATT TTTCAATTTT TCACTAACGC 37285 .......... .......... .......... .......... .......... .......... 948 GTATTTTTTA AATGAAAGTA TGTTGGGACT TTTTTTTTCC TTGGAAAATT CGTATGTTTG 37345 .......... .......... .......... .......... .......... .......... 948 AACCATTATT TGATTGCATT CAAAAAAAAA AAAAGGAATA ATTAAAAAAA TTAAAATTTA 37405 .......... .......... .......... .......... .......... .......... 948 GTTGTTGTAT GTGGACATAT ATATTGGTTA TAAATAAAGT TAGCAGAAGG TTCTAAACAT 37465 .......... .......... .......... .......... .......... .......... 948 TTGAGTGAAT GAAGAGAAGA AAAGGAATAG ACCAATATTT GCATATATAT ACTGAAGTTC 37525 .......... .......... .......... .......... .......... .......... 948 AATATTATAG ATATTAAAAT AAGATTTGTT TTATTTAACA AGTGTATCGA AGAGAAAAAT 37585 .......... .......... .......... .......... .......... .......... 948 TTCACTGACG ATATATGTTA ATCACGAATT TCACATTTTT TAAATGCAGT CAACTATATA 37645 ||||| | .......... .......... .......... .......... .........G CAACTTT... 956 TCATTGTTTG TATTTCTAAA TCATCAAATT CTTAGTTGAA AATTGGGATG ACAATAGGGT 37705 .......... .......... .......... .......... .......... .......... 956 GGGGTGGAGT GGATTGCACG TATATCTGAT TTTATGATGG TTCAAATTTG ATTTTAACTT 37765 .......... .......... .......... .......... .......... .......... 956 TTAACACGTT ATTTGCTCGG TTTCAAAAAG GAAAATCTAG TTTGACTTGG AACGAAATAT 37825 .......... .......... .......... .......... .......... .......... 956 AAGAAAAAAA AAGACTTTTT AATCTATCAT TCTAAATTAA AGTAATGTAC CAAAATGCTC 37885 .......... .......... .......... .......... .......... .......... 956 TTTAATCTTG TAATCTTAAA CATGTTATGT GGAAAGTTAA AGTTAAAGTG TTGCCAAAAA 37945 .......... .......... .......... .......... .......... .......... 956 AAAAGGGTCA TTGTTTTCGA AACAAACTAA AAAGAAAATA GGGACATTCT TTTTAAAATG 38005 .......... .......... .......... .......... .......... .......... 956 GGAGGGAATA TAACAATGAT AAAACATTAT TTATTAAGAT AATTTCTTTA AAGCTACTAA 38065 .......... .......... .......... .......... .......... .......... 956 AATATTTAAG ATAATAAATG AAAATACTTC ATTAAAAAAC GATTTCTTAC ATGTATCCTA 38125 .......... .......... .......... .......... .......... .......... 956 ATTGACCTCA AAAAATAAAA TTTTAAGTCA TTATTTATTA AATTAATATA AGTTTATGAA 38185 .......... .......... .......... .......... .......... .......... 956 AAAATGAATT TATTTTAGTA TCAAATTTAA ATAAGAAAAG AAAATATTAT AAAAATTATG 38245 .......... .......... .......... .......... .......... .......... 956 CAGGGAGAAG CAAAGTGGGA CGGATTAATA AAGAAATTTG TCACGCTGGA TTAGGGATGT 38305 .......... .......... .......... .......... .......... .......... 956 CAAAATGAAC CCAAACATAG GTAACCCGTC CAACTCGCCC AAAATTTTAA GGATTGACTT 38365 .......... .......... .......... .......... .......... .......... 956 AAAATAATTT AAATTAGGTT TAATCTCAAC ACATTCAAGG ATTACTCATT TAAAGGGAAT 38425 .......... .......... .......... .......... .......... .......... 956 CCTCAAATAA GCCTAATTCA ATCTCCAATT TCGACCCGCT TTAAAACTTT TTATTAAGAT 38485 .......... .......... .......... .......... .......... .......... 956 ATCATCCTAT ATGTAAGGTA TGAATTATTA TCTATTTAAC AACTTTTAAG ATTTATCTAT 38545 .......... .......... .......... .......... .......... .......... 956 CCATTTGTTA CTTTTTTTTA TAAAAAAATT CTCGAGCTAA ATTTTAAATT GTGATTATAA 38605 .......... .......... .......... .......... .......... .......... 956 AAGTTGAATA TCAATATGTT GAATTTTTTT AGATTAATCC GGTCAAATTA GGTGAGTCAA 38665 .......... .......... .......... .......... .......... .......... 956 GATCCAACCC GTTTTTAGCC CATTTGAGCC CAGAGTAAAC TTGAATTGGT CAAGACCCAA 38725 .......... .......... .......... .......... .......... .......... 956 CCCGACTTCT ATTTCAACCC ATTTTAATAA GGGCAACTTT CACATATAAC AAACAAAAAA 38785 ||| |||||| | | |||||||||| .......... .......... .......... .......TTT CACATACAGC AAACAAAAAA 979 TTCATATTTG TATGCTATAA CAAACTTTGC GTAATTGCGC TCCATAGCAA ACATAAAACT 38845 |||||||||| ||||||||| ||||||| || |||||||| |||||||||| |||||||| | TTCATATTTG TATGCTATAG CAAACTTCGC ATAATTGCGT TCCATAGCAA ACATAAAATT 1039 GTATAATTTG CTATACATAT ACAATTGTGT AATTCGCTGA CCTA 38889 |||||||| | |||||||||| |||||||| | |||||||| |||| GTATAATTCG CTATACATAT ACAATTGTAT AATTCGCTAT CCTA 1083 hqPGS_C08SLe0082C24.1+_SGN-U325194+ (38763 38889) ******************************************************************************** EST sequence 13 +strand 1043 n (File: SGN-U336521+) 1 TAAGATNCGT GATGGATCCT CGCGCTGCAC CGTGGTGGCG GCCGCTCTAG AACTAGTGGA 61 TCCCCCGGGC TGCAGGAATT CGGCACGAGG AAAGGGATGG TTTTTGGAGA GAATTTTTTT 121 TTTTTACATC TTGTGATAGA AAAGAATTAT TGAAAGAGTT TAGTCATAAG AAGATTTTAC 181 AATAGTTTAA GCACACCTAT ATATCTATTG AAGTTGAATT AAAAACAAAA GGATTGCGGG 241 GTTTTTGATT ATCATTTGAA CTCGAAGTTG TGTAGTGGAA GGTCATCCCC TTGCTCGTTT 301 CGTCTCCAGC TCGCTGCCCC GAAGAAGTTG AGTTTTAGGC TGAATTGTCT TGGCAAGATA 361 AGACGAGTGC CATCAAGTCC ATTTTTGGTT CGTGACATCC GTTTGTATAT TTTGTTTGCA 421 AATATACAAA CAAGGTAAGT ATATACAAAT TCTGCATTTA TACATATAAG AAATTTTCAG 481 AACTATTGTG CTTGTCAATA TACAAACATA GTAATTTATT ACTCCCTTCG TTTCAAAAGG 541 ATGACCTAGT TTGACTTGGA ACAGAGTGTA AGAAAAGAAA GAAAACTCTA ATCTTGTGGT 601 TCTAAATTAA AGTTATGTCA AATGTACCAA AATGCTCTTT AATCTTGTGG TCTTAAATAT 661 GACACGTGGA AAGTTAAAGT TTAAGTGTTG CCAAAAAAAG AAAGGGGTCA TTCTTTTTTA 721 AACAAACTAA AAAGGGAAAT AAGAACATTC TTTTTGAAAC GGAGGGAGTG GATTTATATA 781 TATATATATA TATATATATA TTTATTTATT AATAAATTGA ATATAAATAG CTTGGGGTAG 841 GCTTTTACAA ATTCTAATTT TAAATTAAAG ACTGGATTTT CCAATTTTGG GTTTCCCTAA 901 TTGGTACCCC ACCCTATTGG GGGCTGGTTT TAATGGGAAC ATACTTCAAT AATCAATAGT 961 CTAAAGTTAA AATTTCCAAT TGGCATAAAT TTAAAATAAA TTTTAGGGGG GATTTGGGGT 1021 GGGATCCCCC GGGCATTTTT TTT Predicted gene structure (within gDNA segment 31069 to 41997): Exon 1 32317 32329 ( 13 n); cDNA 407 419 ( 13 n); score: 0.769 Intron 1 32330 32501 ( 172 n); Pd: 0.891 (s: 0), Pa: 0.868 (s: 0) Exon 2 32502 32509 ( 8 n); cDNA 420 427 ( 8 n); score: 0.750 Intron 2 32510 33077 ( 568 n); Pd: 0.000 (s: 0), Pa: 0.028 (s: 0) Exon 3 33078 33105 ( 28 n); cDNA 428 454 ( 27 n); score: 0.643 Intron 3 33106 34509 (1404 n); Pd: 0.768 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 34510 34572 ( 63 n); cDNA 455 517 ( 63 n); score: 0.611 Intron 4 34573 37772 (3200 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0.74) Exon 5 37773 38056 ( 284 n); cDNA 518 809 ( 292 n); score: 0.687 Intron 5 38057 39239 (1183 n); Pd: 0.000 (s: 0.62), Pa: 0.993 (s: 0) Exon 6 39240 39249 ( 10 n); cDNA 810 818 ( 9 n); score: 0.700 Intron 6 39250 39468 ( 219 n); Pd: 0.000 (s: 0), Pa: 0.457 (s: 0) Exon 7 39469 39487 ( 19 n); cDNA 819 836 ( 18 n); score: 0.684 Intron 7 39488 39624 ( 137 n); Pd: 0.175 (s: 0), Pa: 0.401 (s: 0) Exon 8 39625 39654 ( 30 n); cDNA 837 866 ( 30 n); score: 0.800 MATCH C08SLe0082C24.1+ SGN-U336521+ 0.673 455 0.436 C PGS_C08SLe0082C24.1+_SGN-U336521+ (32317 32329,32502 32509,33078 33105,34510 34572,37773 38056,39240 39249,39469 39487,39625 39654) Alignment (genomic DNA sequence = upper lines): ATATATTATT CGCGTACGTA CCCTGAAGCT GTTCCACTTC CATGGTGTAC CATCTTCCTT 32376 |||| || || || ATATTTTGTT TGC....... .......... .......... .......... .......... 419 GGAGATTTTG GGAGGATCCA CCCCCCAATA GCTAACAATT TTCTTAGCCT TGTCGCCGGC 32436 .......... .......... .......... .......... .......... .......... 419 GGCGTTGGTT GCATCAGTGT GTGATGGTTG ATTATGTGTT TTTTGTTCTT CTTTTGTTTT 32496 .......... .......... .......... .......... .......... .......... 419 ACTAGAAGTA TTCATATTAC TCCAATGACG AATTTGTACC ATGCCTCCAC GGGGCAAAAA 32556 || || | | .....AAATA TAC....... .......... .......... .......... .......... 427 TTCGCCCCGT AATTGTCTCA TAAGTAATCC AGATATTTTC ATTGCTGCAT TACGATTCAT 32616 .......... .......... .......... .......... .......... .......... 427 ATTCAAATGA TTGAAATTTA ACAAAATAAG AAATGTTGAT GATGTTTTTT TATGGTGAAA 32676 .......... .......... .......... .......... .......... .......... 427 AATTGTTGGT TTATATATAG TGTTTAAGTT GAAAAAAGTG GAGGAATATG ATGTAATATA 32736 .......... .......... .......... .......... .......... .......... 427 TGAAAGAGTA TGAGAAAGTT GTTTGGAATT GACTTTTCCA TAGTATTGGG AGAGTGATAT 32796 .......... .......... .......... .......... .......... .......... 427 TGCTTCTTGG TGGTGGCCAA CTTTTATTTT ACTTTGACTT TTAGTTATGG AAATTTTCAT 32856 .......... .......... .......... .......... .......... .......... 427 AATTTCTTGG AGGAACTAAT ATGAGAAGTA GGGTGGTATA TCGGCCGGTT TGGTTTGGTT 32916 .......... .......... .......... .......... .......... .......... 427 TTGAAGTTTA TCGGGTTGGC TTATTGGTTA TCGATTTGTA GAGATGCTAA ATCGTTATAG 32976 .......... .......... .......... .......... .......... .......... 427 AACCATTAAG ATATTAGTTT ATCGGTTATT GATCGTTATC GGTTCGGTTA TCGATTTAAT 33036 .......... .......... .......... .......... .......... .......... 427 CGTTAAGATT TGACAAAAAA AAAACATTAA AAATCAATTA GAAACAAGGG GACTAACTAA 33096 |||||||| | || || .......... .......... .......... .......... .AAACAAGGT AAGTATATAC 446 ATAAATCATG CACTTGAGTT CACAAGTTAC ATCTTGCTAA AAAACAAACA CTTTTACATT 33156 | || || A-AATTCTG. .......... .......... .......... .......... .......... 454 GTAGAATAAT CAAGTATTTG AGACAACCAA AAATAAAAGT AGGAAATTAA ACTCTAAATC 33216 .......... .......... .......... .......... .......... .......... 454 GAGGACTTTA TATACAAAAT GGTATAAATA TTATTATTTA ATTTACTATC GGGTTATCTG 33276 .......... .......... .......... .......... .......... .......... 454 TTAACCCGTT AAGAAAAAAC TTTAAACAGT TGAGAACCGA TAACCAGATA ACAAAAAAAT 33336 .......... .......... .......... .......... .......... .......... 454 CAAAATCGTC ATCAAAATCA CTAAACCAAT AACCCAATAA TATAAACCAA TAACTTTTTT 33396 .......... .......... .......... .......... .......... .......... 454 ATCAGTTCGC TTATCAATTT CGATTCGATT TTGAACAGCC CTAATGAGAA GATACCAAGA 33456 .......... .......... .......... .......... .......... .......... 454 AATATTATTT AGGAAATTTT CGCTTTTCTC ATTTAGTTTG AATGGCTTTT AATTTTTGAC 33516 .......... .......... .......... .......... .......... .......... 454 TTAAAGTTAT AAATTTTATT TTATGTATCT ATTTTTATTA TTTTAGCTTA AAATTAATCA 33576 .......... .......... .......... .......... .......... .......... 454 TTTTTATTTA TTTATCCACC TTTTTGTAAA TGTTTAAAAA ATATTTTGAC TACTTGTAAT 33636 .......... .......... .......... .......... .......... .......... 454 AATCCAATCC AAATAGACTC TAAGTTCCTT AAATATCATA AATTTCTATT TTAGTCTTTA 33696 .......... .......... .......... .......... .......... .......... 454 TAATATTTCG CTAAGCATTT ATAACTTTCA AAAAAAGATA TCAAAATCAC ATGTTATAAT 33756 .......... .......... .......... .......... .......... .......... 454 TATATAACAA TAATTGAGGG TACGAAAAAC ACTATTCTTC CAATATATTA TGGTTAATTG 33816 .......... .......... .......... .......... .......... .......... 454 TATTAGATTT TTCTTCAAAT AAACAGTTCT TTATTGTCAT CTTTGTTTTT TTATTGTCAA 33876 .......... .......... .......... .......... .......... .......... 454 TTTTGATTAA GTGGATTGAC TTTAGCAAAA TGACTCGTAA AATATATTTA TTTAAGCTTA 33936 .......... .......... .......... .......... .......... .......... 454 AAAATGTTCC TTATTTTAAA ATCTAGAATG CTGCTTAACA CGATTGAAAA GCTTTTGAAC 33996 .......... .......... .......... .......... .......... .......... 454 GATTATATTT TGACCAAAAA AGACTAAATA CATTTAACAA TAATTTTTGA AAATCAAATG 34056 .......... .......... .......... .......... .......... .......... 454 TCAACTTCAA ACTATTAAAA AAATCAACTT CTTTCTTCTT TTTTCACTCG ACTATATTAA 34116 .......... .......... .......... .......... .......... .......... 454 AGTCTTGATT AAATACAGAT TATGCATTGC TGGGCATCAA ATTTAATTAC TTGAAAATTA 34176 .......... .......... .......... .......... .......... .......... 454 CAAGATTCTT CAAATATATA GATTATATAC TCCCTTATAT ATTTCTTTTT ACTTGTTCAA 34236 .......... .......... .......... .......... .......... .......... 454 TTTTGATTTT TTACTTATCT TTTGTACTTG TCATTTTTGA CTAATCAAGA AAAAAAATAT 34296 .......... .......... .......... .......... .......... .......... 454 CTTTTTACCA GTTATAGATT CGATTTATTT GGAGAGTTAA TGTTTTTGAA AAAGGTAGAA 34356 .......... .......... .......... .......... .......... .......... 454 TATCTTTAAT GAGTAAATTG ACTTGAAATT CTATCTATTT AATTATAAAA ATAAAATGAT 34416 .......... .......... .......... .......... .......... .......... 454 AAATTCACTA TGTTAATTAT TATTTTCTTA ATAAATGTGC TCAGTCAAAA TTGGACAAGT 34476 .......... .......... .......... .......... .......... .......... 454 AAATAGAAAT GGAGAAAGTA AGTAAAAACT TACAATGTTT ACATCAAATA AATTGATACA 34536 || | | |||| || | |||| | | .......... .......... .......... ...CATTTAT ACATATAAGA AATTTTCAGA 481 TAATAGTATG TATTTAAATA TACATAGCTA -TACTTTATC ATAGTTTTTT GAGAAAAGAG 34595 | || | || | | |||| |||| | || || ||| -ACTATTGTG CTTGTCAATA TACAAACATA GTAATTT... .......... .......... 517 TCAAACCCGT TAATCTATTC CTGGATTTTC AACTACATAC TCATACATTG CGGGGTACTT 34655 .......... .......... .......... .......... .......... .......... 517 AATACTCCTC AAAACATTTT AAAAATGAAA TATATAGCCT CCTAAAAGGT CACACTCAGA 34715 .......... .......... .......... .......... .......... .......... 517 TTTTTGTTAG AGAGTGAACA CACTTGCCTG CCACGTCATA TATATTAATT TTTAATAAAA 34775 .......... .......... .......... .......... .......... .......... 517 AATTTATGAT GTCTTTCTTT GTTTTATTTT TCTTTTATAT TTTTTTCTTT CTATTTCCAG 34835 .......... .......... .......... .......... .......... .......... 517 CTATTTTCTT CTTTTCTTTT TCTTTTTCCG TTTTTTGCCA TTGAAGAGAA AATTTCTAAG 34895 .......... .......... .......... .......... .......... .......... 517 TTTTTTATTT ATGCTAGTTT TAAACTTACC TTTATGGAAT GTACAGTTAT GAAATTTCAA 34955 .......... .......... .......... .......... .......... .......... 517 GTTTTATTGT TAAAAGGTAA AGTTATAAAT ATTTGATAAT CTTTCATTTT TTGCAATTGA 35015 .......... .......... .......... .......... .......... .......... 517 ATAATCTTTT TCCCACCATT TTCATCTTCT TGCAAACATC AAAAGTTTTT CAATTTGAAA 35075 .......... .......... .......... .......... .......... .......... 517 GGTAAAATTT AGTAAAAATT TTAGTTCTAA CTGTTTCATC TACTATTTGA TTGATACTCA 35135 .......... .......... .......... .......... .......... .......... 517 AGTTATTTTC ATGGATGAAT TTGTTGAATT CTTCAAATTG AGGTAATGGA TACATAACAA 35195 .......... .......... .......... .......... .......... .......... 517 TGGATCTTTT CATTTCTATT TTCAAAATCA CACATGGGTT TCGTTGACAA TCCAAAATTC 35255 .......... .......... .......... .......... .......... .......... 517 TTTCTGAACT TGAATTTAAA TTATTAAACT AAGCACAAAA AAATCAAGAT AAGAATTTGC 35315 .......... .......... .......... .......... .......... .......... 517 TAATCCATTT GGCCATGTGG TTAGACATGA TGATTATAAA TTTTAATAAT ATTAATAAGG 35375 .......... .......... .......... .......... .......... .......... 517 AATTGATTTT CAAAAAATTT CAATTTCGTG CACAAATTGA AAACAAATTC TAGAATCAAG 35435 .......... .......... .......... .......... .......... .......... 517 AAGAATAATG AAATTCCATG GTGGATCCAA ATTTAGAGAA GGTGAGTGAT ACGAGAGATT 35495 .......... .......... .......... .......... .......... .......... 517 TAGTTTATGT TGTTGTGAAG AAGAAAGGAA ATAAATAAGA AAAAAGAATA ATTAGAAATA 35555 .......... .......... .......... .......... .......... .......... 517 CACATATTTA TGAAAAGAAA GTTTTGAAAA TAAAATTTAT TATTTGTTTT GGTCCTCACT 35615 .......... .......... .......... .......... .......... .......... 517 CTCTTTAAGA GAGTGAGATA TATTCACTGT TTCTACATAA TCATTTAGAG AGTAAATTTA 35675 .......... .......... .......... .......... .......... .......... 517 TATCAGTTTT AAACAGTTCA AGAGGGTAAT AACCGTGAAA TTGGAGTGTC TAGTTGAAAT 35735 .......... .......... .......... .......... .......... .......... 517 TTCAGGTATA GTTTAGAAGG ACTTTACACC ATTTTCTCTA AATTTTTTAA AAATTATTTA 35795 .......... .......... .......... .......... .......... .......... 517 ACTACGATAA ATTATATCTT GATTAAAAAA CAGTACGGTA AGTATTCACC AAGATGATGA 35855 .......... .......... .......... .......... .......... .......... 517 GATGGTAAAT GTTGAGTTTA TGACTTTATG AGTGTGAAAA AAAATATAGA AGCGAAATTA 35915 .......... .......... .......... .......... .......... .......... 517 GAATAGTAAT TATTTTCAAG TATATTCTTA TATAAATAAT AAAGTTTAAC TATTCTTTTG 35975 .......... .......... .......... .......... .......... .......... 517 TAATATTATT TAATACTAAA AGAACATCTA ATAAATTAAT AGAGATAATT TAGTATTTCT 36035 .......... .......... .......... .......... .......... .......... 517 CCATCTCAAT TATATAATTT GACTAGATAT AAAATTTAAG TAATATGAAA AGACGGTGCA 36095 .......... .......... .......... .......... .......... .......... 517 ATATTTCAAA ACTACACATA TTCATAAATA AATTTTTAAA TAAAGGAGTA CATCTTAAAA 36155 .......... .......... .......... .......... .......... .......... 517 ATTTTTTTGT CAAATATATA CGACCCATTG TGACTGAAAT GTTAATGTAT AATTAAATAT 36215 .......... .......... .......... .......... .......... .......... 517 TTGTGGATAA TAAATTTATG TGTCATTCTT TTTTAAAGTA ATTATAAAAG AAAAGTATGA 36275 .......... .......... .......... .......... .......... .......... 517 GATATATTTT TATTATTTTT TCACGATAGA CACAAAATGC AGTAAAACCA CATATTTATT 36335 .......... .......... .......... .......... .......... .......... 517 TTGGAGCGGA GACTGGACAG ACTCTTCGGG AGAAACTACG TAATAAAATT TATTTTACTA 36395 .......... .......... .......... .......... .......... .......... 517 ATCATATATA TTATTTTAGG AGAAAATTTA CATAATTAAA TATACTTCAC TAATAAATAT 36455 .......... .......... .......... .......... .......... .......... 517 TATTATATTC ATATTTTTAA AATATTATGT ATGATTCGCA TGTATCTGAA ATATTAGATA 36515 .......... .......... .......... .......... .......... .......... 517 CATAAGAAAA TATCTATTGA GATCTATTAT ATATTAAAAA TACATATAAA TTCACTTGAA 36575 .......... .......... .......... .......... .......... .......... 517 TACAATTTAT CTAAAACAAA CTTAACTTAT ATATTCTAAG GTACATGTAT TTGGACGTAT 36635 .......... .......... .......... .......... .......... .......... 517 ATAAACATAC CTAAATCTAA TAAAATTTGA GTGTATGTAA GTTATTAATT CTCTTAATTA 36695 .......... .......... .......... .......... .......... .......... 517 TTTTGATGGG GTATTTGATT TTGGACCATA GAGTTTAATT TTGACACGGA AGAATATAGG 36755 .......... .......... .......... .......... .......... .......... 517 AGAATATATC CTAAGGTGAT ATTCACACGT ATATGTGGGC CTTGCATAGT CCAAAAAATC 36815 .......... .......... .......... .......... .......... .......... 517 CTTTGGAGGC ACGTCAAGTT TTGAGAAGAA AAAAAAACTA AAAATGACAA AAATTTCATT 36875 .......... .......... .......... .......... .......... .......... 517 TTTAATTTTT TTATTATTAA TATTATTCTT TTATAAATTT TTAAATTTTT ATATTTTTAT 36935 .......... .......... .......... .......... .......... .......... 517 GCATCAGATT AATGTATCAA TGCATTAAAT TAATATTTTC GTGTATCAGA TTAATGTATC 36995 .......... .......... .......... .......... .......... .......... 517 GTGAATGAAA TGTACATTAT ATTAGTGTAT CATGTATAAA ATATAATGTA TCTTACTTAA 37055 .......... .......... .......... .......... .......... .......... 517 TAATTAATAT ATCTCGTGTA TCAAATTAAT GTATCAACAC TTATATTATT GTATCAGTTT 37115 .......... .......... .......... .......... .......... .......... 517 GAGGAATTTC TGTAATTATA AAATTATAAG GGACAAATAA TAATTTTACC TTAAAAATAT 37175 .......... .......... .......... .......... .......... .......... 517 TTGATTTCTG TCATTTTCCC AAAATATAAA TCATAAATAG TCATTTTCAA GTCTTCATAA 37235 .......... .......... .......... .......... .......... .......... 517 TTATATAAGA AAAAATTACA AATTATTATT TTTCAATTTT TCACTAACGC GTATTTTTTA 37295 .......... .......... .......... .......... .......... .......... 517 AATGAAAGTA TGTTGGGACT TTTTTTTTCC TTGGAAAATT CGTATGTTTG AACCATTATT 37355 .......... .......... .......... .......... .......... .......... 517 TGATTGCATT CAAAAAAAAA AAAAGGAATA ATTAAAAAAA TTAAAATTTA GTTGTTGTAT 37415 .......... .......... .......... .......... .......... .......... 517 GTGGACATAT ATATTGGTTA TAAATAAAGT TAGCAGAAGG TTCTAAACAT TTGAGTGAAT 37475 .......... .......... .......... .......... .......... .......... 517 GAAGAGAAGA AAAGGAATAG ACCAATATTT GCATATATAT ACTGAAGTTC AATATTATAG 37535 .......... .......... .......... .......... .......... .......... 517 ATATTAAAAT AAGATTTGTT TTATTTAACA AGTGTATCGA AGAGAAAAAT TTCACTGACG 37595 .......... .......... .......... .......... .......... .......... 517 ATATATGTTA ATCACGAATT TCACATTTTT TAAATGCAGT CAACTATATA TCATTGTTTG 37655 .......... .......... .......... .......... .......... .......... 517 TATTTCTAAA TCATCAAATT CTTAGTTGAA AATTGGGATG ACAATAGGGT GGGGTGGAGT 37715 .......... .......... .......... .......... .......... .......... 517 GGATTGCACG TATATCTGAT TTTATGATGG TTCAAATTTG ATTTTAACTT TTAACACGTT 37775 || .......... .......... .......... .......... .......... .......ATT 520 ATTTGCTCGG TTTCAAAAAG GAAAATCTAG TTTGACTTGG AACGAAATAT AAGAAAAAAA 37835 | | || | |||| ||||| || | |||| |||||||||| ||| | | | ||||||| || ACTCCCTTCG TTTC-AAAAG GATGACCTAG TTTGACTTGG AACAGAGTGT AAGAAAAGAA 579 AAGACTTTTT AATC-TATCA TTCTAAATT- AA---A-GT- -AATGTACCA AAATGCTCTT 37887 | | | | |||| | | ||||||||| || | || ||||||||| |||||||||| AGAAAACTCT AATCTTGTGG TTCTAAATTA AAGTTATGTC AAATGTACCA AAATGCTCTT 639 TAATCTTGTA ATCTTAAACA TGTTATGTGG AAAGTTAAAG TTAAAGTGTT GCC-AAAAAA 37946 ||||||||| ||||||| | || | |||| |||||||||| || ||||||| ||| |||||| TAATCTTGTG GTCTTAAATA TGACACGTGG AAAGTTAAAG TTTAAGTGTT GCCAAAAAAA 699 -AAA-GGGTC ATTGTTTTCG AAACAAACTA AAAA-GAAAA TAGGGACATT CTTTTTAAAA 38003 ||| ||||| ||| |||| |||||||||| |||| | ||| || | ||||| |||||| ||| GAAAGGGGTC ATTCTTTTTT AAACAAACTA AAAAGGGAAA TAAGAACATT CTTTTTGAAA 759 TGGGAGGGAA TATAACAATG ATAAAACATT ATTTATTAAG ATAATTTCTT TAAAGCTACT 38063 ||||||| | | || ||| | | || ||| | || |||| || || -CGGAGGGAG TGGATTTAT- ATATATATAT ATATATATAT AT-ATTTATT TAT....... 809 AAAATATTTA AGATAATAAA TGAAAATACT TCATTAAAAA ACGATTTCTT ACATGTATCC 38123 .......... .......... .......... .......... .......... .......... 809 TAATTGACCT CAAAAAATAA AATTTTAAGT CATTATTTAT TAAATTAATA TAAGTTTATG 38183 .......... .......... .......... .......... .......... .......... 809 AAAAAATGAA TTTATTTTAG TATCAAATTT AAATAAGAAA AGAAAATATT ATAAAAATTA 38243 .......... .......... .......... .......... .......... .......... 809 TGCAGGGAGA AGCAAAGTGG GACGGATTAA TAAAGAAATT TGTCACGCTG GATTAGGGAT 38303 .......... .......... .......... .......... .......... .......... 809 GTCAAAATGA ACCCAAACAT AGGTAACCCG TCCAACTCGC CCAAAATTTT AAGGATTGAC 38363 .......... .......... .......... .......... .......... .......... 809 TTAAAATAAT TTAAATTAGG TTTAATCTCA ACACATTCAA GGATTACTCA TTTAAAGGGA 38423 .......... .......... .......... .......... .......... .......... 809 ATCCTCAAAT AAGCCTAATT CAATCTCCAA TTTCGACCCG CTTTAAAACT TTTTATTAAG 38483 .......... .......... .......... .......... .......... .......... 809 ATATCATCCT ATATGTAAGG TATGAATTAT TATCTATTTA ACAACTTTTA AGATTTATCT 38543 .......... .......... .......... .......... .......... .......... 809 ATCCATTTGT TACTTTTTTT TATAAAAAAA TTCTCGAGCT AAATTTTAAA TTGTGATTAT 38603 .......... .......... .......... .......... .......... .......... 809 AAAAGTTGAA TATCAATATG TTGAATTTTT TTAGATTAAT CCGGTCAAAT TAGGTGAGTC 38663 .......... .......... .......... .......... .......... .......... 809 AAGATCCAAC CCGTTTTTAG CCCATTTGAG CCCAGAGTAA ACTTGAATTG GTCAAGACCC 38723 .......... .......... .......... .......... .......... .......... 809 AACCCGACTT CTATTTCAAC CCATTTTAAT AAGGGCAACT TTCACATATA ACAAACAAAA 38783 .......... .......... .......... .......... .......... .......... 809 AATTCATATT TGTATGCTAT AACAAACTTT GCGTAATTGC GCTCCATAGC AAACATAAAA 38843 .......... .......... .......... .......... .......... .......... 809 CTGTATAATT TGCTATACAT ATACAATTGT GTAATTCGCT GACCTAAATT GTATAATTCG 38903 .......... .......... .......... .......... .......... .......... 809 CTGGCCTATT TCGCTGCAAT TGTATAATTT GTTTTGCATA TAGTTGAATT GAATTAAAAT 38963 .......... .......... .......... .......... .......... .......... 809 GTATGTATAT TGCATAATTA TAAGTGTATA GCAAGAAGAT ATATGTTTTT CTCGCTTTAT 39023 .......... .......... .......... .......... .......... .......... 809 ACAAAAACAG AAACACAATA TATACACTTC TGTTGTATAA AGCTAGAGAA AATTGTATTA 39083 .......... .......... .......... .......... .......... .......... 809 CACTAAAATT GTTAATTCGC AATTGTATAA TTCGTTGGCC TTTTCTCTGC AATATTTGAA 39143 .......... .......... .......... .......... .......... .......... 809 GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA TTTTTGCATG 39203 .......... .......... .......... .......... .......... .......... 809 TGTATATACA ATTTTCTCTT GCTTTATACA AAACAGAAAC AGAATTATAC ACTTCTGTGT 39263 || | |||| .......... .......... .......... ......TAAT A-AATT.... .......... 818 ATAAAGCGAG AGAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG GGTGAGAGAC 39323 .......... .......... .......... .......... .......... .......... 818 GCTGGCAAAT TTTAGCTAAT GTTTGCTATG GAGCACAAAT AAATCAAACC CTGGCTATTC 39383 .......... .......... .......... .......... .......... .......... 818 CATTTAATTT AGCTTATTAG TTTGCTATTA TATATAATTT TCCCTTTTAA TAACCCAAAT 39443 .......... .......... .......... .......... .......... .......... 818 CACCCATTTG ATACCCCTAC GCTAGGCAAA TCAAAAGTTT GAGGGTTAAG CTCAATCACC 39503 | | | | || || || | || .......... .......... .....GAATA TAAATAGCTT G-GG...... .......... 836 TCATACCCAA CCTGCTCCTA ATAAGCATCT CTTAAATCAG GAATGTGTCT TAATTTTACT 39563 .......... .......... .......... .......... .......... .......... 836 TAATTACTTT GTTAATGCAA AACTTGATTA TTATTATTTT TTTAAAAATG ATTTTGCTTA 39623 .......... .......... .......... .......... .......... .......... 836 GGTAGGCAAT TGCAAATATT ATTTTTAAAT T 39654 |||||| | | ||||| | | |||||||| | .GTAGGCTTT TACAAATTCT AATTTTAAAT T 866 hqPGS_C08SLe0082C24.1+_SGN-U336521+ (39625 39654) ******************************************************************************** EST sequence 25 -strand 949 n (File: SGN-U322384-) 1 TTTTTTTTTT TGTATGCATT TACATATTTA TAAAGCAAAG AGCCACAAGA GAATATATAT 61 TACATTATGT ATATACAATA AAGACGATCG AATTCTTTTA ATGCATCAAC AATCTTTGAA 121 CCCGAACTCT ACAAAATGAA GTGAAACAAA GAAATGCTCA TCTCCAATCT ACACAAAATA 181 ACTTAAAAAG CTGAAAGAAA CTCAATGTAG CTTTACTCTT GCTCTTGTTG TAATTTATGA 241 CAAAGTTTTA AGCTCCCACA TAGTTTCTGC ATCAATGCTG CAGTTGCTTT GTAGAAATTT 301 CACATCAAGA ATCAATTCAA AGTTCTAATT TTTTAAACAC CATAAAACAT TAAGAAGGAA 361 AGACGGTTGG GGGAGGGGTT CAAACCTGAG ACTCTCAGTA GACTGCAAAA TGTTGCGGAC 421 AAAAATTGCC TGGTCGCTTG GTTGCTCGCC GATTGAAATT GGTGGTCTTA GCGCGCTTGT 481 TGAAGCTCAT CATTTTTATC CAGCTGCTGG TTCTGCAGCT GCTGCTGGAT GACGTTGTTT 541 GTTGTTTGTT CTTCGGGTTG CACTGTCTGT AAAGAAAAAT AGAGAGGAGG GCAAAAGAGA 601 TCTGGGCGAC GGATTTTGAG AGGAGAGGAG AAGAGAATGA AGAAAATTGA GGGTTAGGGA 661 TCTTTTGTAA AAAATAGGAA ACTCTTAGCA GACTGAAAAT GTTGCGGACG GAGACCGTCT 721 AGTCGCTTGG TTGCTCGCCG ATTGGGGCTG CCATCGATGG AGGTTCACTG ATGGTCTTCA 781 CGCGCCTGTT CGAGCTCCCC ATTTCTTTCC GGCTGCTGGT TTTGCGGCTA CTGCTTGACG 841 AAATTGTTTG TTGCTCATTT TTAGGGTTGC ACTGATCGGA AAGAAGGATG GAGAGAAGGG 901 CAAAAAGGAT CCGGGCGGCT GATTCGGAGA GGAGGGCAAA AGGGATCTG Predicted gene structure (within gDNA segment 42177 to 44416): Exon 1 42877 43816 ( 940 n); cDNA 10 949 ( 940 n); score: 1.000 MATCH C08SLe0082C24.1+ SGN-U322384- 1.000 940 0.991 C PGS_C08SLe0082C24.1+_SGN-U322384- (42877 43816) Alignment (genomic DNA sequence = upper lines): TTGTATGCAT TTACATATTT ATAAAGCAAA GAGCCACAAG AGAATATATA TTACATTATG 42936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATGCAT TTACATATTT ATAAAGCAAA GAGCCACAAG AGAATATATA TTACATTATG 69 TATATACAAT AAAGACGATC GAATTCTTTT AATGCATCAA CAATCTTTGA ACCCGAACTC 42996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATACAAT AAAGACGATC GAATTCTTTT AATGCATCAA CAATCTTTGA ACCCGAACTC 129 TACAAAATGA AGTGAAACAA AGAAATGCTC ATCTCCAATC TACACAAAAT AACTTAAAAA 43056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAATGA AGTGAAACAA AGAAATGCTC ATCTCCAATC TACACAAAAT AACTTAAAAA 189 GCTGAAAGAA ACTCAATGTA GCTTTACTCT TGCTCTTGTT GTAATTTATG ACAAAGTTTT 43116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAAGAA ACTCAATGTA GCTTTACTCT TGCTCTTGTT GTAATTTATG ACAAAGTTTT 249 AAGCTCCCAC ATAGTTTCTG CATCAATGCT GCAGTTGCTT TGTAGAAATT TCACATCAAG 43176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCCCAC ATAGTTTCTG CATCAATGCT GCAGTTGCTT TGTAGAAATT TCACATCAAG 309 AATCAATTCA AAGTTCTAAT TTTTTAAACA CCATAAAACA TTAAGAAGGA AAGACGGTTG 43236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAATTCA AAGTTCTAAT TTTTTAAACA CCATAAAACA TTAAGAAGGA AAGACGGTTG 369 GGGGAGGGGT TCAAACCTGA GACTCTCAGT AGACTGCAAA ATGTTGCGGA CAAAAATTGC 43296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGAGGGGT TCAAACCTGA GACTCTCAGT AGACTGCAAA ATGTTGCGGA CAAAAATTGC 429 CTGGTCGCTT GGTTGCTCGC CGATTGAAAT TGGTGGTCTT AGCGCGCTTG TTGAAGCTCA 43356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTCGCTT GGTTGCTCGC CGATTGAAAT TGGTGGTCTT AGCGCGCTTG TTGAAGCTCA 489 TCATTTTTAT CCAGCTGCTG GTTCTGCAGC TGCTGCTGGA TGACGTTGTT TGTTGTTTGT 43416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTTAT CCAGCTGCTG GTTCTGCAGC TGCTGCTGGA TGACGTTGTT TGTTGTTTGT 549 TCTTCGGGTT GCACTGTCTG TAAAGAAAAA TAGAGAGGAG GGCAAAAGAG ATCTGGGCGA 43476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCGGGTT GCACTGTCTG TAAAGAAAAA TAGAGAGGAG GGCAAAAGAG ATCTGGGCGA 609 CGGATTTTGA GAGGAGAGGA GAAGAGAATG AAGAAAATTG AGGGTTAGGG ATCTTTTGTA 43536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATTTTGA GAGGAGAGGA GAAGAGAATG AAGAAAATTG AGGGTTAGGG ATCTTTTGTA 669 AAAAATAGGA AACTCTTAGC AGACTGAAAA TGTTGCGGAC GGAGACCGTC TAGTCGCTTG 43596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATAGGA AACTCTTAGC AGACTGAAAA TGTTGCGGAC GGAGACCGTC TAGTCGCTTG 729 GTTGCTCGCC GATTGGGGCT GCCATCGATG GAGGTTCACT GATGGTCTTC ACGCGCCTGT 43656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTCGCC GATTGGGGCT GCCATCGATG GAGGTTCACT GATGGTCTTC ACGCGCCTGT 789 TCGAGCTCCC CATTTCTTTC CGGCTGCTGG TTTTGCGGCT ACTGCTTGAC GAAATTGTTT 43716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGCTCCC CATTTCTTTC CGGCTGCTGG TTTTGCGGCT ACTGCTTGAC GAAATTGTTT 849 GTTGCTCATT TTTAGGGTTG CACTGATCGG AAAGAAGGAT GGAGAGAAGG GCAAAAAGGA 43776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTCATT TTTAGGGTTG CACTGATCGG AAAGAAGGAT GGAGAGAAGG GCAAAAAGGA 909 TCCGGGCGGC TGATTCGGAG AGGAGGGCAA AAGGGATCTG 43816 |||||||||| |||||||||| |||||||||| |||||||||| TCCGGGCGGC TGATTCGGAG AGGAGGGCAA AAGGGATCTG 949 hqPGS_C08SLe0082C24.1+_SGN-U322384- (42877 43816) ******************************************************************************** EST sequence 41 +strand 940 n (File: SGN-U329532+) 1 AAGAATCAAA ACCCAAAATT AACTCCCCTG AACCCTCTCT CTCCCCGTTC AAAATTACCC 61 ACAATCTACC AGTAGTTTGT GCTGTGCAAA CTCCTCCGGC CGGCGACGGC GGCATCAGCA 121 ATTTAGAGTC GGTGACTCCT CTTCCGTCAC TCCCTAAAGA TGAGTCGATC AAGTGAAGCA 181 GCCGCCTTGA AGCGGAAAAG ACCGGATTCA TCTACTCAGG GACTTGTAGA TGCTGAGCTT 241 GTAGTGCTCA ATGTGGTCAA AAGTAAAAAA AATCAGGGTG TCTGGGTAGC AGATGTGAAA 301 AAAGAGGCAA ACATCGCACC AGCTCTTGTC GATAAATGCC TTACTTCATT GGTGAAGAAG 361 AACTTGATTA AAAAAGTCCC TAGTATCCAA AATAAGGCAA AGAAGTATTA CATGGCTGTT 421 GAGTATGAAC CTTCCGAGGA ACTGACTGGT GGAGCATGGT ATTCCGAGGG AAAACTTGAC 481 AAGGAATTCA TAACCGTTCT TAGAGAGACG TGCCTTAAAG TCATTGGAAT GATGAAAGTT 541 GCTACTGTGG AAGGAATCCA CGACTTTTTG AAGAAGCGGA AAGTTGTTGA GTGCTGTACA 601 AGTCAACAAG TCGGGGAAAT CTTGAACTCT ATGGTTCTAG ACGATTCCAT TATAGAGGTA 661 AAGAGCACTG GATTGGGTGA ATATCATTCT ATTCCTATTG GATCTGTTTG TTACAGAATT 721 GCAGTTGGAG TTACTTCAGG TCCGAAAACA ATAGGGCCAA TGGCTTCGAT TCCATGTGGT 781 GCTTGCCCTA GGATTAGTGT ATGTACACCT GATGGAATTA TATCTCCGAA AACCTGTGTC 841 TACTTCACTA AATGGTTAGA CATTGAATTC TGATGGACTA CAACAGTTGC TTTTCGGGTT 901 TCTTATTTTG TCTTTTGGTT TATAGATGAA ACCAATCAAC Predicted gene structure (within gDNA segment 54029 to 51607): Exon 1 53429 53275 ( 155 n); cDNA 1 155 ( 155 n); score: 1.000 Intron 1 53274 53002 ( 273 n); Pd: 0.999 (s: 1.00), Pa: 0.704 (s: 1.00) Exon 2 53001 52217 ( 785 n); cDNA 156 940 ( 785 n); score: 1.000 MATCH C08SLe0082C24.1- SGN-U329532+ 1.000 940 1.000 C PGS_C08SLe0082C24.1-_SGN-U329532+ (53429 53275,53001 52217) Alignment (genomic DNA sequence = upper lines): AAGAATCAAA ACCCAAAATT AACTCCCCTG AACCCTCTCT CTCCCCGTTC AAAATTACCC 53370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCAAA ACCCAAAATT AACTCCCCTG AACCCTCTCT CTCCCCGTTC AAAATTACCC 60 ACAATCTACC AGTAGTTTGT GCTGTGCAAA CTCCTCCGGC CGGCGACGGC GGCATCAGCA 53310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATCTACC AGTAGTTTGT GCTGTGCAAA CTCCTCCGGC CGGCGACGGC GGCATCAGCA 120 ATTTAGAGTC GGTGACTCCT CTTCCGTCAC TCCCTGTAAG TCTCTCTCAT ATGTATGTTC 53250 |||||||||| |||||||||| |||||||||| ||||| ATTTAGAGTC GGTGACTCCT CTTCCGTCAC TCCCT..... .......... .......... 155 CAGTTCTAAT TTGCTTACTC CATTCTTCCA CGTTTATTTT TAGGCGTAAT CTATACAACT 53190 .......... .......... .......... .......... .......... .......... 155 CTTAAATTTA TGAGTTTGAA TTTCGTTCAC ACGCTTGGAT TATGATTTGT TTCAATTGCA 53130 .......... .......... .......... .......... .......... .......... 155 ATTTTAAGGC GGAATATGTA CAAATGTTAA ATTTGCAAGT ATACCTCGAA CTGCAATTTG 53070 .......... .......... .......... .......... .......... .......... 155 TATCAATTGC AAGTTTAAGA GATTATCGAT GTGTTGGGTT TGTTTTAATT TACTCTTCTT 53010 .......... .......... .......... .......... .......... .......... 155 GTGCTCAGAA AGATGAGTCG ATCAAGTGAA GCAGCCGCCT TGAAGCGGAA AAGACCGGAT 52950 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA AGATGAGTCG ATCAAGTGAA GCAGCCGCCT TGAAGCGGAA AAGACCGGAT 207 TCATCTACTC AGGGACTTGT AGATGCTGAG CTTGTAGTGC TCAATGTGGT CAAAAGTAAA 52890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTACTC AGGGACTTGT AGATGCTGAG CTTGTAGTGC TCAATGTGGT CAAAAGTAAA 267 AAAAATCAGG GTGTCTGGGT AGCAGATGTG AAAAAAGAGG CAAACATCGC ACCAGCTCTT 52830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCAGG GTGTCTGGGT AGCAGATGTG AAAAAAGAGG CAAACATCGC ACCAGCTCTT 327 GTCGATAAAT GCCTTACTTC ATTGGTGAAG AAGAACTTGA TTAAAAAAGT CCCTAGTATC 52770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATAAAT GCCTTACTTC ATTGGTGAAG AAGAACTTGA TTAAAAAAGT CCCTAGTATC 387 CAAAATAAGG CAAAGAAGTA TTACATGGCT GTTGAGTATG AACCTTCCGA GGAACTGACT 52710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATAAGG CAAAGAAGTA TTACATGGCT GTTGAGTATG AACCTTCCGA GGAACTGACT 447 GGTGGAGCAT GGTATTCCGA GGGAAAACTT GACAAGGAAT TCATAACCGT TCTTAGAGAG 52650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGAGCAT GGTATTCCGA GGGAAAACTT GACAAGGAAT TCATAACCGT TCTTAGAGAG 507 ACGTGCCTTA AAGTCATTGG AATGATGAAA GTTGCTACTG TGGAAGGAAT CCACGACTTT 52590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGCCTTA AAGTCATTGG AATGATGAAA GTTGCTACTG TGGAAGGAAT CCACGACTTT 567 TTGAAGAAGC GGAAAGTTGT TGAGTGCTGT ACAAGTCAAC AAGTCGGGGA AATCTTGAAC 52530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGAAGC GGAAAGTTGT TGAGTGCTGT ACAAGTCAAC AAGTCGGGGA AATCTTGAAC 627 TCTATGGTTC TAGACGATTC CATTATAGAG GTAAAGAGCA CTGGATTGGG TGAATATCAT 52470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATGGTTC TAGACGATTC CATTATAGAG GTAAAGAGCA CTGGATTGGG TGAATATCAT 687 TCTATTCCTA TTGGATCTGT TTGTTACAGA ATTGCAGTTG GAGTTACTTC AGGTCCGAAA 52410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATTCCTA TTGGATCTGT TTGTTACAGA ATTGCAGTTG GAGTTACTTC AGGTCCGAAA 747 ACAATAGGGC CAATGGCTTC GATTCCATGT GGTGCTTGCC CTAGGATTAG TGTATGTACA 52350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATAGGGC CAATGGCTTC GATTCCATGT GGTGCTTGCC CTAGGATTAG TGTATGTACA 807 CCTGATGGAA TTATATCTCC GAAAACCTGT GTCTACTTCA CTAAATGGTT AGACATTGAA 52290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGATGGAA TTATATCTCC GAAAACCTGT GTCTACTTCA CTAAATGGTT AGACATTGAA 867 TTCTGATGGA CTACAACAGT TGCTTTTCGG GTTTCTTATT TTGTCTTTTG GTTTATAGAT 52230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGATGGA CTACAACAGT TGCTTTTCGG GTTTCTTATT TTGTCTTTTG GTTTATAGAT 927 GAAACCAATC AAC 52217 |||||||||| ||| GAAACCAATC AAC 940 hqPGS_C08SLe0082C24.1-_SGN-U329532+ (53429 53275,53001 52217) ******************************************************************************** EST sequence 26 +strand 872 n (File: SGN-U343183+) 1 AAAGCTGGAG CTCCCCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GAATTCGGCA CCAGGAACTT TATAGATTCG AGCGTAGGAT GTTATAATAG TAGTACTACA 121 TTTGGTTTAC TAGATTACGT ACGTTGGAAA TACATATTAT TTATTTATAT AAATGAATCA 181 ATAACATATA TACTATGGGC TAGCCCACTC CATCCGGGCT AACTCATACA GGTTTCGACA 241 TTTTATGGGT CAGGCCGGGC TAACCCATTT TTTTGTGTGG GATAGAAAAT GATCGGCCTA 301 ACCCACAAGT ACGTGAGCTA CAGGCTTGCC GGGCAAGCCC ATTTTTTTGT GTGGGTCAGG 361 AAATGACCGG CCCAGCCCAC AAGTATGTGG GCTACCGGCT TGCCGGGCTA GCTCAATTTT 421 TTAAAACTTA TATTATTTTT AGAATTATTA AATTATAAAT TATAATTTAA AAATATTATC 481 ATAAATATTG ACAAAATTTT TTAAAACTTA TATTATTTTT AGAATTATTA AATTATAAAT 541 TATAATTTAA AAATATTATC ATAAATATTG ACAAAAAAAT AGTAGATGAT GTTAATGTTA 601 CTACTTTTTA ATCAATCCAC AAATAAAATT ATCTTTATAA TATTTATTAA GTTTTTTTTT 661 CAAGTAAAAG TAATATTAAC CTAATTGTTT TGAGTTTGGA CTCTCTTNAA TTTTAATTTT 721 AAAANNTATA TTATATTTTT AANTAATTTT TACTAGCCCA CGGGCCGGCC CTATCGATAT 781 TTCTCAACCC CACAAATCAG CAGACTATAC AGGCCGGCTA AAAAGCCCTA TTCCATATTG 841 GCTTCAAAAT ATAGCTCACC CTTATAAATC TG Predicted gene structure (within gDNA segment 83720 to 73847): Exon 1 80899 80870 ( 30 n); cDNA 435 464 ( 30 n); score: 0.733 Intron 1 80869 79955 ( 915 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 2 79954 79892 ( 63 n); cDNA 465 527 ( 63 n); score: 0.627 Intron 2 79891 76730 (3162 n); Pd: 0.000 (s: 0.56), Pa: 0.000 (s: 0.88) Exon 3 76729 76437 ( 293 n); cDNA 528 797 ( 270 n); score: 0.833 MATCH C08SLe0082C24.1- SGN-U343183+ 0.796 386 0.443 C PGS_C08SLe0082C24.1-_SGN-U343183+ (80899 80870,79954 79892,76729 76437) Alignment (genomic DNA sequence = upper lines): ATTATTATCA TTGTTAATTT ATAAGATCTA AAACAACTCT GGCTTTATCC TGTCATTTAG 80840 ||| ||| | || |||| || |||| | || ATTTTTAGAA TTATTAAATT ATAAATTATA .......... .......... .......... 464 ACTTTGGGGC ATATGAGTAA GCTATGGATT TATATATATG TTAAAGACTT CACCAAACAG 80780 .......... .......... .......... .......... .......... .......... 464 ATTTAGATAA TAGATTTTGA ACCACTTATC TACTTAGACA AAATCCCCAA AACACACATG 80720 .......... .......... .......... .......... .......... .......... 464 AATTTGATGA TATAAAGCTG TTATTTAGAA AAATATTTAC CTGTTTGGCG TGTAGCAACT 80660 .......... .......... .......... .......... .......... .......... 464 TGTCTCTCTA TAGTCCTTTC ATCCAAATGA AACTTAATTC GTTCCGCTGC AATTGCATCT 80600 .......... .......... .......... .......... .......... .......... 464 AGTTTCTCCA TAATCTTTTT CATCCTTTTC CCAATCTTGT GACGGAAAGT GATAACGTTT 80540 .......... .......... .......... .......... .......... .......... 464 GGATGATAAC ACCCATATTT ATTCTTCTTC TGTATAATTG GTGCCTCAGT TTTACATTCG 80480 .......... .......... .......... .......... .......... .......... 464 TCCAAGATGT CATCAGCTTC ATATGCAGCA CCATTGAGTT TCTGCAACCA ATTTTCAATT 80420 .......... .......... .......... .......... .......... .......... 464 GCCTTGTCCT TCAATTGCTT CAACTGAGCA TCTTGTACCA CAGCTTGGAT TGTAGTAAAC 80360 .......... .......... .......... .......... .......... .......... 464 GTGCTTTGAA GCTTTTCGAA CTCATCCTTA AAACCAAGAA TCAATCCAAG TTCCCCTTGG 80300 .......... .......... .......... .......... .......... .......... 464 ATGAAACAAG TCAGATTCTC TAACATAATT TGAAGGAAAG CTTCAGCCAT AGAGTATATT 80240 .......... .......... .......... .......... .......... .......... 464 TTTGAAATGA AGTAAGGTGT TGGAAATTAG AATGGACTTG TAACAATTAC AAACTCAATT 80180 .......... .......... .......... .......... .......... .......... 464 ATTCAATGGA AATAACACAC ACTCCCACGG GACCATGTCT ATCAAATTTA CTACCATATG 80120 .......... .......... .......... .......... .......... .......... 464 CAATTACTAT TAAACAGTAC TCCTTTCGTC TCATTTTATA TGAATTAATT TGACTTCACA 80060 .......... .......... .......... .......... .......... .......... 464 CGAAAAATTT AGGAAAGAAA TATTACTCCC CATGTCTCAA TTTATGTGAC ACTTTTCGTT 80000 .......... .......... .......... .......... .......... .......... 464 TTTCCAATGG ACAAGTCAAA TCATTTGTTC GTTATAAGAG TGCACAATTA AATATATTAC 79940 | ||| || |||||| .......... .......... .......... .......... .....ATTTA AAAATATTAT 479 CGT-CTTATC AACAATCTAT ATATATACAT ATAATTTTTT TTAAAAAGAA TATATCGGGT 79881 | | ||| |||| | | | | || | || ||| ||| ||| || | CATAAATATT GACAAAATTT TTTAAAACTT AT-ATTATTT TTAGAATTA. .......... 527 GCAGGTGGAT TCACCTCTGA CCATATGTGA AATTCAGTAT TACATTTAAT ATTAGATATG 79821 .......... .......... .......... .......... .......... .......... 527 TGAAGCTGTT ATTTCTTTAG TCCATACACA AAATTGACAA TCGGTAAAAT CGATCTTATA 79761 .......... .......... .......... .......... .......... .......... 527 TTATTATTTA TTTTATACTC ATCTTTTTTG TTCTCTATTT TATTATTTTT ATGCTCAATG 79701 .......... .......... .......... .......... .......... .......... 527 TTGAACACTC TCCTAAAAAA AAGATATTGT CGCTTACATG TTAAAAAGAG GGGTTTTCGA 79641 .......... .......... .......... .......... .......... .......... 527 AGCAGAGGGT GTGTGTGAAA GAAATCAACA AAATGTGTTG ATGTTCCGTG ATCAGTTGAA 79581 .......... .......... .......... .......... .......... .......... 527 TGAGTTAATG GTAGTTAGTT GTTAAGTCTA ATTTCTTGAT TAAGTGAGCT AAATTAATAA 79521 .......... .......... .......... .......... .......... .......... 527 TGAGTAGAGT TGGTTAGAAT AAGTTGGTTA GAAAGTTTGC TAGACTTGTC AGTACTGTAT 79461 .......... .......... .......... .......... .......... .......... 527 ATATTGTAGT ACAAACACAT TCATTCATAA CAATGCAAAT TGTTTTCTTC TTCCTTGCGT 79401 .......... .......... .......... .......... .......... .......... 527 CACATTAATC AATTGTTAAT GGATCATATT AGATAAATGA CTCATAAGTG ACGTTCGGCG 79341 .......... .......... .......... .......... .......... .......... 527 TGTATTCGTT TTTATTTCAT AACAATGACT CTATGAGGAT ATGATTCCGC GACCCATCTC 79281 .......... .......... .......... .......... .......... .......... 527 TTCAATGTAA GGTCTCCAAC AAACTCATCA TCAACTGGTT TCTTTCTTGT GAAGGTTTCC 79221 .......... .......... .......... .......... .......... .......... 527 ATCAATAAAA TGCCGTAGCT GTAAACATCC CCCATAGTTG ACACTATCCC TACTCTGCCA 79161 .......... .......... .......... .......... .......... .......... 527 TTAAAATGAA ATACATCATA TATGCATATC GAATACAAGT TGAAGAAAGT AATTAGTAAA 79101 .......... .......... .......... .......... .......... .......... 527 TAAAAATTTG ATCAGTACCT GGTGCCATGT AGCCAATGGT GCCTTAAGTC TTTGTCAATG 79041 .......... .......... .......... .......... .......... .......... 527 CCACTGGATC ATACGCGGTC AAGAGTTTGG ATATACCAAA ATCACTTACT CTGGCAACCA 78981 .......... .......... .......... .......... .......... .......... 527 TGTCTTCATC CAAAAGTATG TTCAAGTCGC AATGGACCAC TACAAGTGAA TGGCCTTGGT 78921 .......... .......... .......... .......... .......... .......... 527 GTAGATACTC TACGGCACAA GCCACATCAA ACATAATTTT CAGCCTCTTG TTTAAATCCA 78861 .......... .......... .......... .......... .......... .......... 527 AGAAATTGTT GTGTGAGTAA AGCCAATAAT CAACATCTCC ATTAGGCATG TACTCAAACA 78801 .......... .......... .......... .......... .......... .......... 527 CCAATGCCTT AAAAATCAAG ATTTGCACAA CTACTTATCA CCTTAACAAG ATTCCTATTT 78741 .......... .......... .......... .......... .......... .......... 527 CGAGTGTTAC GCAAAACCTT ACACTCCAAA TCAAACCTCT TGAATGCATC TTGCAGTTGT 78681 .......... .......... .......... .......... .......... .......... 527 GCATTGAAAA CCTTTACAGC AGCTATAGTC CCATTTGTAA ATGTCCCCTT ATAAACCATA 78621 .......... .......... .......... .......... .......... .......... 527 CCAAGGCTTC CCTTTCCAAT CAAATTTGAT TCGTCAAAGT TGTTAGTCCC TCGAACAAGT 78561 .......... .......... .......... .......... .......... .......... 527 TCATAGTAAG AAAACCTTTT GTGTGATAAC TGATCATACC AATCAGTTAA AGGAATAAGT 78501 .......... .......... .......... .......... .......... .......... 527 TGGTTGTTAC GTCTCCGATA ATTCAACAAC CATATCATGC CTAAAACCCC TATGACTAAA 78441 .......... .......... .......... .......... .......... .......... 527 CCTCCAGCTG CAACTGGTCC AAGAACAAAT TTTAGTACTG TTTTCTTCCT GTTTCTTCTT 78381 .......... .......... .......... .......... .......... .......... 527 GTCACGTTGT TCTGGATTTC ACACACCTTG ACTTGGAATC TAGGCGGTCC ACATAACTCT 78321 .......... .......... .......... .......... .......... .......... 527 TCGTTGCCGA TGAATGATTC AGCTGTGAAA ATTACCAAAA GGCCCTCCAT CTGGTATTTC 78261 .......... .......... .......... .......... .......... .......... 527 ACCTGATAAC TCATTGTAAG AGACTTTCAG ATAGTTGAGA TGCTCAAGCT TTGTTAACTT 78201 .......... .......... .......... .......... .......... .......... 527 TCCTGCAAAT AGATGGTAGG TTCATTTCAT TTGGTATATT TCCTGCAAAT TCATTTTGAA 78141 .......... .......... .......... .......... .......... .......... 527 AATAAGTATA TGGTTATCAT GCTAAAGATC AGACATAGAG TGTCTTTCGA AAATGTTCTT 78081 .......... .......... .......... .......... .......... .......... 527 CACAACATAT ATTAATCTTT GTTTGTTACT AGACAATCCA CAAATTGGCT ATATCTAGTG 78021 .......... .......... .......... .......... .......... .......... 527 AAATTAGGAA CTTCGTTAAG AGTATTCAAG ATTTAATACA TACAGAATCA CGTACCTGTA 77961 .......... .......... .......... .......... .......... .......... 527 AAGTTATTCC ATCCAATAAA CAGTTCTTGA ACCTTTGACA TGTTCCATCC AATAAATTTC 77901 .......... .......... .......... .......... .......... .......... 527 CTATCAATTA TAAAATCACA GACACACACA AAAATGATGA TTAATTCAAG AAGAAATTAG 77841 .......... .......... .......... .......... .......... .......... 527 TAAATGAAAA GTTTACAAGT TAGTTAATTA CCAGTGAATT TGTTATAAGA CAAGGACAGA 77781 .......... .......... .......... .......... .......... .......... 527 ACTTCAAGTT TGGTGCATTT ATTCAAACCT TTGAGGACTA ATGATGTCAC TCTTTGATGC 77721 .......... .......... .......... .......... .......... .......... 527 TTTTTACTGC AAGATATGCC TATCCAATTG CAAATGTGAG TTCCTTTTGT CCAGTTTTTC 77661 .......... .......... .......... .......... .......... .......... 527 GACAACATTT CATTGGGAAG TTATATGAGC TTTGAAAGCT AAAAGAGAAG CCTCATCAGT 77601 .......... .......... .......... .......... .......... .......... 527 TGTAATGTTT GATGCATTAG TAACTGAGAG GCATGCTAAC AAAACTAGGC ATGCTATAAT 77541 .......... .......... .......... .......... .......... .......... 527 AATAGTCTTC GCAACCATTT TGATTTGTTC AACTTCTTTA GCTGCTATTT GTGCCTATGT 77481 .......... .......... .......... .......... .......... .......... 527 TTTCGTTTTC AAACGCCATT CTATATATTC TGTGTGTATA CTTGTAATTG AGTCAATACT 77421 .......... .......... .......... .......... .......... .......... 527 TATCTAATTA ATACCAATGA TTTGAAACAA CTTTTAATCG TATATTGCTA GCTGAACTTG 77361 .......... .......... .......... .......... .......... .......... 527 ACTGCAATTC ATTGCTAAAG GGAAATAAAC CATTGGTTGT GGAATTCTGT ATTGACAGTT 77301 .......... .......... .......... .......... .......... .......... 527 AAATAATTTA CTTGACAATG TCATTATTCA AATGTATATC TATAACCTCC CCAGAATAGA 77241 .......... .......... .......... .......... .......... .......... 527 TCCTTGACAA AAGAATGTCA ACTGTTTTAC GGTCAAATTA ACCAATCTAT CTTGTAGTTA 77181 .......... .......... .......... .......... .......... .......... 527 TAAATTTCCA ACAGAGCATC AACTTGCAGA GGAATAAATT TACAGATTCC TTCTTCTACG 77121 .......... .......... .......... .......... .......... .......... 527 GCCGAACTAA GTTTTCTAAA TTACCTCTTA CATTGCATGT TCTTTAAATT TAGAATGATA 77061 .......... .......... .......... .......... .......... .......... 527 GGAGAGGACA ACGACAACAA CAATATATTC AATGATATAT TCGGTGAAAT TTCACTAAAT 77001 .......... .......... .......... .......... .......... .......... 527 GAGATATGGA ATTGATAGAG TATAAGCAGA TCATTTTTGG AAAATCTTTT CTTTTCAAGT 76941 .......... .......... .......... .......... .......... .......... 527 TGACATATTA AATACCTTCG GATAGAGCTG TCAATATTGG CTAACACATT TCATCCGGAC 76881 .......... .......... .......... .......... .......... .......... 527 TAATCCATAC ATGTTTTGAT ATTTTATGGG TTAAGCTGGG ATAACTCATT TTTTGTATGG 76821 .......... .......... .......... .......... .......... .......... 527 GTCAGAAAAT GGGTCGGCCC AACCCATAAG TACGTGAGCT ACAGGCTTGT CGGGCCAGCC 76761 .......... .......... .......... .......... .......... .......... 527 CACTTTTTTA ATTTTTTTTG TAATTATTAA ATTAAATTAT AAATTATTAT TTAAAAAACA 76701 ||||||||| ||||||| || ||||||| | .......... .......... .......... .TTAAATTAT AAATTATAAT TTAAAAAT-A 555 TTATCGAAAA TATCGACAAA ATAATATTAC ATGATGTTAA TGTTACTACC TGTTAATCAA 76641 ||||| ||| ||| |||||| | |||| || |||||||||| ||||||||| | |||||| | TTATCATAAA TATTGACAAA AAAATAGTAG ATGATGTTAA TGTTACTACT TTTTAATC-A 614 ATCCACAAAT AAAATTATCT TTATAATATT TATTAAGTTT TTTTCAAGTA ACAGTATAAA 76581 |||||||||| |||||||||| |||||||||| |||||||||| |||| | | || |||| ATCCACAAAT AAAATTATCT TTATAATATT TATTAAGTTT TTTT---TTC A-AG--TAAA 668 TAGCTAAATG GAAATATTAA CCTAATTGTT TTGAGTTTGG ATTCTCTTTA ATTTTAATTT 76521 || | || |||||| |||||||||| |||||||||| | |||||| | |||||||||| -AG-T-AA-- ----TATTAA CCTAATTGTT TTGAGTTTGG ACTCTCTTNA ATTTTAATTT 719 TAATTTTAAT ATTATATTAT ATTTTTAATC AATTTTTATT GGCCCACGTA CCGGCGCTAC 76461 ||| || |||||||| |||||||| |||||||| | ||||||| ||||| ||| TAA----AA- NNTATATTAT ATTTTTAANT AATTTTTACT AGCCCACGGG CCGGCCCTAT 774 CGATATTTCT GAAACCTCAC AAAT 76437 |||||||||| |||| ||| |||| CGATATTTCT -CAACCCCAC AAAT 797 hqPGS_C08SLe0082C24.1-_SGN-U343183+ (80899 80870,79954 79892,76729 76437) ******************************************************************************** EST sequence 16 -strand 1112 n (File: SGN-U338250-) 1 CNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 61 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNTTTT TATCGGCCCC 121 CCTTAGGGGA AATGGGTCCC GGCCCCCCCT CGAATTTTTT TTTTTTTTTT GACATCAACG 181 GACATCTATT CCTTCTTAAC TGTGCACAAG TACATACTTA AAACTCTTGT AAAGTTGAAC 241 AAGTAGACAC CAAGTAGGAC GCGTGTGTAC TTGTTCAATT CTATACAAAT TTAAAACCTA 301 CTTATGCAGA TTCAAAGTTG AAGTTGCGCT CCACACCTTC AGACCTCCAA CTCCACCCCG 361 CCCCATTGCC ATACTACTGT AGAGACGACG GTGAACACAC AATGTGATAA CAAATTGAAT 421 ATAAACTAAA GCTATATTAC TTAGTTCTCA CACCTGTTTC ACGCGTAGCA GCGGCGGCTT 481 GTCTCTCTGT AATTTTTTCA AGGAAATGAA ACTTCCTTCT ATCCTCAGCA ATTGCATCTA 541 GTTTCTCCAT TATCTCTTTC ATCCTTTTCC CAATTTTGTG ACGGAAATTG ATAATTCCTG 601 GATGAAAAAA CCCTAATCGA GATTGCTCGA ATCTTGTTGC CTCATTTTTA CATTCGCCCA 661 ATATATCATC AACTTCATAT GCAGCAGAAT TGAGTTTCTG CAACCAATTC TCAATTGACT 721 TGTCCTTCAA TTGCTTCTCC TGAGCATCTT GTAGCACAGC TTGAATTGTG GAAAACACAC 781 TCGACAGCTT TTCAAATTCC TTTTCGAAAC CGAAAATCAA TACAAGTTTT CCTCCGATGA 841 AAGAAGTGAG ATTTTCTAGC ACAACTTGAA GAAAAGCTTC CGCCATGTAT TGATGAAATA 901 TTGACCAATT CAAATTTTCC GGTTTGCTCA GCTGATCAGT GTATAGACTT CCATATATTC 961 CATGATAACG ACATATACCA ACAATTCTCC GTACCTCTGG TTGACTGGCT GAAGTTCGTC 1021 GGCCATGTTT TTTCTTTTAT TGCTCGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT 1081 TCTGAGCGGC CGCCCCGCGG AGTCAGTTTT TN Predicted gene structure (within gDNA segment 87091 to 75449): Exon 1 86287 86281 ( 7 n); cDNA 204 210 ( 7 n); score: 0.857 Intron 1 86280 86168 ( 113 n); Pd: 0.692 (s: 0), Pa: 0.875 (s: 0) Exon 2 86167 86151 ( 17 n); cDNA 211 226 ( 16 n); score: 0.647 Intron 2 86150 85593 ( 558 n); Pd: 0.437 (s: 0), Pa: 0.562 (s: 0) Exon 3 85592 85555 ( 38 n); cDNA 227 263 ( 37 n); score: 0.500 Intron 3 85554 84446 (1109 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76) Exon 4 84445 84380 ( 66 n); cDNA 264 325 ( 62 n); score: 0.773 Intron 4 84379 82906 (1474 n); Pd: 0.000 (s: 0.72), Pa: 0.396 (s: 0.52) Exon 5 82905 82819 ( 87 n); cDNA 326 406 ( 81 n); score: 0.546 Intron 5 82818 82475 ( 344 n); Pd: 0.800 (s: 0.60), Pa: 0.000 (s: 0) Exon 6 82474 82449 ( 26 n); cDNA 407 431 ( 25 n); score: 0.654 Intron 6 82448 81924 ( 525 n); Pd: 0.716 (s: 0), Pa: 0.000 (s: 0) Exon 7 81923 81905 ( 19 n); cDNA 432 450 ( 19 n); score: 0.579 Intron 7 81904 81441 ( 464 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 8 81440 81417 ( 24 n); cDNA 451 474 ( 24 n); score: 0.479 Intron 8 81416 80665 ( 752 n); Pd: 0.490 (s: 0), Pa: 0.218 (s: 0.74) Exon 9 80664 80247 ( 418 n); cDNA 475 888 ( 414 n); score: 0.797 Intron 9 80246 79877 ( 370 n); Pd: 0.000 (s: 0.80), Pa: 0.828 (s: 0) Exon 10 79876 79858 ( 19 n); cDNA 889 907 ( 19 n); score: 0.579 MATCH C08SLe0082C24.1- SGN-U338250- 0.756 721 0.648 C PGS_C08SLe0082C24.1-_SGN-U338250- (86287 86281,86167 86151,85592 85555,84445 84380,82905 82819,82474 82449,81923 81905,81440 81417,80664 80247,79876 79858) Alignment (genomic DNA sequence = upper lines): GCAGAAGGTA AACACTAAAA AGAGTTTATT TTATATGCAC AAAAATACAG ACAGGAATAC 86228 ||| ||| GCACAAG... .......... .......... .......... .......... .......... 210 TTCAGACAAT GTTGAATAAT TTTTATCAAC AAGAGTTGAT CCTATATAAA ATTTTAACAG 86168 .......... .......... .......... .......... .......... .......... 210 TAACAGAGGT AAAACATGCA AGGCACGTTT CCAGGACTCG TATTACTATA AGTGGGAAAT 86108 | ||| | | ||||| T-ACATACTT AAAACTC... .......... .......... .......... .......... 226 TCTAAAGTGA AAAGTTGAAT TATCATTTTG GCCTTGTACT AAATTGAAAT TTGATTAATT 86048 .......... .......... .......... .......... .......... .......... 226 AGTTAATTTA AATATCACAT TGTCTCATTT TAATAAAAAT ATTAATAACT TTTGTACTTC 85988 .......... .......... .......... .......... .......... .......... 226 CTTAGATTAA TTTCTAATTA AAATATCTAA TTTAAATAAT ATTTATCATC TATTATCTAT 85928 .......... .......... .......... .......... .......... .......... 226 ATGTATATTT AATTTAATCT CCATCATATC ATATAATCAG CATAATAATA ATAATAATAA 85868 .......... .......... .......... .......... .......... .......... 226 TAATGATAAT AATAATAATA ATAGTAATAA TAATAATAAT AATAATAATA ATAATAATAT 85808 .......... .......... .......... .......... .......... .......... 226 ACTAACAGTG AAAGCAATAT TAGGCAAAAA TTAGATTACA TTTTGTCCCT ATATCATATA 85748 .......... .......... .......... .......... .......... .......... 226 TAAATATTAA TCGTCTAATA AATTGTTAAC TGAATATTAA ATAGTAAATT TTAATTACTA 85688 .......... .......... .......... .......... .......... .......... 226 TAAGGGAGGA TTACACATTA AGCAATATCA AATTTATCAA ATTCTTTCGG TTACAATTTA 85628 .......... .......... .......... .......... .......... .......... 226 TTTATGTTGA TGGTTAATTA ATATTAAATT GTTAGAAACA ATTATTATCA AGAAGACAAA 85568 | | | | || || ||||| .......... .......... .......... .....TTGTA AAGTTGAACA AGTAGACACC 251 AAGACCCCCA ACGATATTGT TCAATGAATT AAAGGTGAAG ACTAAAGGTT ACAAAATTAA 85508 ||| | || AAGTAGGAC- GCG....... .......... .......... .......... .......... 263 TTAGGAAACT GATATGTATC TTTTATTTTT TTCCTTTCAT CTCCCCTCAC CTAAAATTTT 85448 .......... .......... .......... .......... .......... .......... 263 CCTATTTAAA GTCACCTAGA AATGAAAATT ACTTTACAAA TCTCATCTGA TCTTCTTACT 85388 .......... .......... .......... .......... .......... .......... 263 AAAGTATGTT AATATGTCAA TTCTCTCTTA TAAATTATGA TCCATTTTCT CTTTTTTGGT 85328 .......... .......... .......... .......... .......... .......... 263 ATATCATTTC TTTCTTCTTT TTTAATTTCC TTTCTGATCA TAGTCATAGA CTGCTGAAGA 85268 .......... .......... .......... .......... .......... .......... 263 AAAGTTGTCA TCAATCTTTA TAGAATTGTT AAGGACAATA ACATTATTGT TGTATTCGGA 85208 .......... .......... .......... .......... .......... .......... 263 TCGAAGACAT TATGATTAAT TGATTGATTA ATTGTAAAGA ATGTTTAAAA GAAAATAATT 85148 .......... .......... .......... .......... .......... .......... 263 TTTTTTATCA CGTTATATGA ATTATCACAA AATAATGAAT GTTTGTACTA TTTTATGTAA 85088 .......... .......... .......... .......... .......... .......... 263 AATGATTATA GCTATTACCA TTTGAAGTTA TTTTCATATT AGTTTTAAAT GTTCTTTTAT 85028 .......... .......... .......... .......... .......... .......... 263 AATGTTTCTC TTCTTATTCA TTTTAAGTTA AATATGTTCT CTATTTATAT AAAGAAGTTT 84968 .......... .......... .......... .......... .......... .......... 263 ATGTTTAAAT AATTAAATAG ATGTTACTTA TTTAGACTTT ATATAATTAT TGGCGTAAAA 84908 .......... .......... .......... .......... .......... .......... 263 TATGTACAAT ACTATATTTC TTATTTCCAA ATCAAATTTA AAATTGTCTC AATGATATAT 84848 .......... .......... .......... .......... .......... .......... 263 TAGATATTTT ATTATATGTT TGAAATATTT GACAGATATG TTGACTGACT ATGCATGCAT 84788 .......... .......... .......... .......... .......... .......... 263 TTATAATTAT TTCATTATCT CATAAATTAG TATCTGTTTC ATGTACTTCT TATCCCCCTC 84728 .......... .......... .......... .......... .......... .......... 263 TTTTCTTACT TTTAAATACT CATTTGCAAT TCAATATATG TATCGATTTG AAAGATTACT 84668 .......... .......... .......... .......... .......... .......... 263 AACATTAGCT TATGAATTAC ATGTATATTT ACTTTTTTAT GTATATTTTA TTTTTTAAGT 84608 .......... .......... .......... .......... .......... .......... 263 TATGACATAT AGCAAATCCA ACAATATATG TACCATTTAC AAATTAATTT TAGTACAAAA 84548 .......... .......... .......... .......... .......... .......... 263 TTTATATTAA GTAGTTTAAA ATAAACGTGC AACGCACGTT TTGAAGACTA GTGTATATAT 84488 .......... .......... .......... .......... .......... .......... 263 ATATATATAT ATATATATAT ATTATGCTAC ATATGACTTA ACTATGTACT TGTTCAATTA 84428 | |||||| ||||||||| .......... .......... .......... .......... ..TGTGTACT TGTTCAATTC 281 TATACAAGTT AAAATATCAA ATTATGTGTA TATTCAAATT TGAAGGATAT AAATATAAAA 84368 ||||||| || ||| | | | ||| || | ||||||| | |||| | | TATACAAATT TAAA-ACCTA CTTA--TGCA GATTCAAAGT TGAA-GTT.. .......... 325 TAAAATAAAA TTAAAAGACA TATTTATCTA TTATCTTGTT TATTGTTTAT TGCCTGCTCC 84308 .......... .......... .......... .......... .......... .......... 325 ATTTTGCTTT TCAGGAACTA GTGGTTGTCA TTTTAGTATT TGTATGCCTT TATTTCAATG 84248 .......... .......... .......... .......... .......... .......... 325 ATTTTTTTTT GCTCATATGT TAGTTTGTAG GTTTGATATT GTTAGTTGCC TGGAAGAGTT 84188 .......... .......... .......... .......... .......... .......... 325 GAATTTTGTT TTTTTTAGCA TCTTTTCTAA GTAAGAAGAT TGAACTGTAG TAAGCTGATA 84128 .......... .......... .......... .......... .......... .......... 325 TCCAGAGCTT TAAACTTTCA AATTATATTT TGTTATGACT TGAATCTTGA ATATAAATGT 84068 .......... .......... .......... .......... .......... .......... 325 GTGTCTATGC AGCATGGCAG GGTTATAGTA TTTTAAAACA TGCATTGTGG CTTTATTTGC 84008 .......... .......... .......... .......... .......... .......... 325 TTTCATTTAT CTTGGCTGCC CTTTCTTCTA TTTGATTTAC ATTGCCTTAG TTATGCGTAT 83948 .......... .......... .......... .......... .......... .......... 325 AAATGCAGAA TTGTTTTTAT CGTTGACTGT TTTTCTTTAT GTTTCCTTTT GATCCGTTTC 83888 .......... .......... .......... .......... .......... .......... 325 ACGTGCATTC GCCATGACTC CTAACGGATT TCGCCCGTAT CCCTGCACTT CCTCGCTGAG 83828 .......... .......... .......... .......... .......... .......... 325 CCGTAAGGGC TCAAACCTCC TCCTCAAGTC TTAGACCCTC ACAACTGGCG TACAGGTTGA 83768 .......... .......... .......... .......... .......... .......... 325 ACACAAAAAA ACGAGCTGCT GGAAATTAAT TTACAGGTCG GAAGAATCAG CAAGTGTGTT 83708 .......... .......... .......... .......... .......... .......... 325 GCTGGAAAAT CAAATCTACA GATTTGAGCA GCAGTATACA TATTGTATAC ATTTGTTATA 83648 .......... .......... .......... .......... .......... .......... 325 CACTGATATA CAGGTTGAAA GGCGTATACG AACAAATGCA GGGCTCAAAA GTCCAATACG 83588 .......... .......... .......... .......... .......... .......... 325 AATTGGTTAC AAATAGTTGA TTTGTTTCCA AAAGAAAAAT CAGAAAATTA CATCTCATTA 83528 .......... .......... .......... .......... .......... .......... 325 GTAATAAGCA GATGAGGAAT GTGAGCAATT TTGTACCAGT CTTGTCCTAT TCCCTTCTCA 83468 .......... .......... .......... .......... .......... .......... 325 CACCGCTTGG CCAGTGTTGG ACATTCCCTA ACTGATAAAT TTGTTAGGTG CTGCAATCCC 83408 .......... .......... .......... .......... .......... .......... 325 TCCGGTAAAC ATTTTAGCCT CTTACAATTT GTTATGGATA ATTCTGTGAG TGAAGTTAAA 83348 .......... .......... .......... .......... .......... .......... 325 CCTTTCACCC CTTCCTCGGG GAGACTCTCG AGTGCGTCAC AATATTCAAT TTTCAGATGC 83288 .......... .......... .......... .......... .......... .......... 325 TTCAAAGCAT TGAGACTAGC CAGGCTGTTT GGCAGCTCTT TGAGATTGAA GATGAAAGAG 83228 .......... .......... .......... .......... .......... .......... 325 ATTTCCAAGT ATTTGAGATT TGCAAGGCTT TTGAACATCT CTTCTGGGAG CGAAGTAGCT 83168 .......... .......... .......... .......... .......... .......... 325 GTCAAGTTAT GGCTAATGTT GAGGGAAGTA AGAGCCCTAA GATTATATAT GGACCTCAAA 83108 .......... .......... .......... .......... .......... .......... 325 CCTATTGCAT CTGACATGTT CCGATTAACT ACCAATTTCT TGACAGAAGA AAGGGTCGGA 83048 .......... .......... .......... .......... .......... .......... 325 ATAACAAGCA CAGGACACCA GCTAATTGTC ATCTCTTCAA GCACGGGGAA TTGCTCTTCT 82988 .......... .......... .......... .......... .......... .......... 325 CCTGCCTCTT TCAGCAATCC TTTCAGATTA TCGAAATTGA CTATAATAAG TTTTCTCAGA 82928 .......... .......... .......... .......... .......... .......... 325 GATGGAAACC TTCTTCTTGT AGGGAATCCA GAATCTTCA- ACATACTCCA GTTCCGCAGA 82869 | |||| | ||||| || | | | || | | .......... .......... ..GCGCTCCA -CACCTTCAG ACCTCCAACT CCACC-CCGC 361 CCCATCTCCT AACTCTAGAC TTTCAAGACA AGGCAGATCA CCAAACGGTG GTAAGCATGA 82809 ||||| | | | || || | | |||| | | || || || | ||| CCCAT-TGCC A-TACT--AC TGTAGAGACG ACGGTGAACA -CACAATGTG .......... 406 GCAGTTTTCA CAACCTCTAA TTGCAATAGA GACAACATTT TTCAAAACTG AGTGATTCAT 82749 .......... .......... .......... .......... .......... .......... 406 CCACTTTGGA AGACGGAATC CTCTGAAGCC AGTGATTGTT AAACCAGTCA CATTGGAGTG 82689 .......... .......... .......... .......... .......... .......... 406 TGGTTTGAGG GCTTCAAGCA CTTCAACTTC TTCTGATTCA TATCTATGCC GTCCTTTCCA 82629 .......... .......... .......... .......... .......... .......... 406 AGTCATGCTT AAAGAATGCA GATTTTCTTT TGCAGATAAA TTGGCTTCTT TTGCATCCCT 82569 .......... .......... .......... .......... .......... .......... 406 ATCATTCTTC ACTCTCTCAA GATGCGTGAT TTCAATTGAC CCATACAAAT TCAGGTTTCG 82509 .......... .......... .......... .......... .......... .......... 406 TAATTCACCA AGTAGAGAAT CTTTTCTCTC GCCAATAACA AAGAAACTTA GAGTCTTAAG 82449 |||||| || | || | || ||| .......... .......... .......... ....ATAACA AATTGA-ATA TAAACTAAAG 431 GCATGTCAAA GATCCTATCC TTGGTGGCAT AGAATCCAAT CCATCGCAAC CATCAAGTAA 82389 .......... .......... .......... .......... .......... .......... 431 GAGATTTCGG AGACTACCAA GTTTACTTGT TTCTTTTGGC AAACAACAAA GTGACCAGCA 82329 .......... .......... .......... .......... .......... .......... 431 ATACTCTACA TTAAGAGTCT GCAGATTTTG AAGCTTGCAT AACTGCTTTG GAAGAGTACG 82269 .......... .......... .......... .......... .......... .......... 431 CATGTTATTG AGAGAGGTTC AAGTATCTTA AATGTACTAG ATCTCCAATG GAGGACGGTA 82209 .......... .......... .......... .......... .......... .......... 431 ACTGCTTAAG TCCCATGGAA CTTAGATTAA GAACCCTCAA TGAGACAAAC TTTTGCAAGT 82149 .......... .......... .......... .......... .......... .......... 431 GAGGAGGAGA GTAAGAAGAC ACCACTTTTG CGAAACCAAT CGACATCATA TGTAGGTAAC 82089 .......... .......... .......... .......... .......... .......... 431 CTTCTACATT TATTTCTCGG ATATTGCTGC TTGATGTGCT TGCTGAAAAT AGAGATGTTG 82029 .......... .......... .......... .......... .......... .......... 431 CCAAATCATG AATGAGATCA TGCATCTTGA AATAAGTTTG ATCATATTTA ACTTCAATCT 81969 .......... .......... .......... .......... .......... .......... 431 CTTGGAAAAA AGACCTCAAG TATAATTCAT TCCATACTTC ATTACCTACA TCCTCTAGCT 81909 ||| | | ||| | .......... .......... .......... .......... .....CTATA TTACTTAGTT 446 CCAAGTTTCC TTTTGATAAA AGAAAACTAT GTGCCATCCA GAGAGAGATT AGATTTTCCT 81849 | | CTCA...... .......... .......... .......... .......... .......... 450 TTTCCATTTT GGTATCCTTT GGGAATACTG CACAATATGA AAAGCATTGT CTCAAATCAA 81789 .......... .......... .......... .......... .......... .......... 450 GTGGAAGGTG ATGGTAACTA AGTCTCAGGG CAGGCAAAAT AGAACTTTCA TCTTGAGGTA 81729 .......... .......... .......... .......... .......... .......... 450 AATTCCAAAT CTAACTATCT CTCACATGTT CCCACTGTCT TTCTTCTCTC TTGAAGCGCA 81669 .......... .......... .......... .......... .......... .......... 450 AAATACCTCC AAGAGTTTTA GCTGCTAGAG GCACACCACC ACATTTTTTC ACAATCACCT 81609 .......... .......... .......... .......... .......... .......... 450 TTCCGATAGC CACTAGATTA AGATTCATTT CTTCTTGGTG CCCAAATGCA CGTTGCATGA 81549 .......... .......... .......... .......... .......... .......... 450 ACAACAACCA ACAATCTTCT TGAGACAAAT TTGACAATTC ATATGGTTGC AATGTCCCCA 81489 .......... .......... .......... .......... .......... .......... 450 TGATTGATCC AACCTTTTCA AGACGGGTAG TGGTTAGAAC ATAAGCACCA CTTGCTCCA- 81430 || | || | || .......... .......... .......... .......... ........CA CCTGTTTCAC 462 GCCTTCAAGA CTTGTCTTAA CTTAGCCCAC TTATCTTGAT CTTCATTCCA AACATCATCT 81370 || | || | GCGTAGCAG- CGG....... .......... .......... .......... .......... 474 AAGACAAGCA AATATTTTTT TCCATTCAGC AAGTCCTGAA GCTTCTTTTG AAGTGGAGCC 81310 .......... .......... .......... .......... .......... .......... 474 AAGTCCATGT CACCAAGTGA CTTTTCTTCA ATAGATTCTA CAATTTCCTT TATCAACCTC 81250 .......... .......... .......... .......... .......... .......... 474 TTTTCATTAA AATCTTCCGA GACACAAATC CATATTTTGG GATGGAAATG TTCAATTACT 81190 .......... .......... .......... .......... .......... .......... 474 CTCTGATCAT TGAAGACCAT TTGGGCAAGG GTCGTCTTTC CTAATCCCCC CATACCAAGT 81130 .......... .......... .......... .......... .......... .......... 474 ATTGGGAGGA CTGAAAGTGT TTGGGCATTG TTTATCAGGA TTTTCACTAT CTCATCCTTA 81070 .......... .......... .......... .......... .......... .......... 474 TCTTTGTCTC TTCCATAAAC TTGTGGTTCA TTTAAAACAA AACCTGGTCC AAGATCGGTA 81010 .......... .......... .......... .......... .......... .......... 474 AGAGTCAGCA AAAAAAAACA AAGAAGAATT TTGCAAAAGA CAATGATCAG CTTGATCAGA 80950 .......... .......... .......... .......... .......... .......... 474 AGCAGCAGAC ATATTTCAAA TATAAAACAA ATGCACTATT TTGAATTCAC ATTATTATCA 80890 .......... .......... .......... .......... .......... .......... 474 TTGTTAATTT ATAAGATCTA AAACAACTCT GGCTTTATCC TGTCATTTAG ACTTTGGGGC 80830 .......... .......... .......... .......... .......... .......... 474 ATATGAGTAA GCTATGGATT TATATATATG TTAAAGACTT CACCAAACAG ATTTAGATAA 80770 .......... .......... .......... .......... .......... .......... 474 TAGATTTTGA ACCACTTATC TACTTAGACA AAATCCCCAA AACACACATG AATTTGATGA 80710 .......... .......... .......... .......... .......... .......... 474 TATAAAGCTG TTATTTAGAA AAATATTTAC CTGTTTGGCG TGTAGCAACT TGTCTCTCTA 80650 | || ||||||||| .......... .......... .......... .......... .....CGGCT TGTCTCTCTG 489 TAGTCCTTTC ATCCAAATGA AACTTAATTC GTTCCGCTGC AATTGCATCT AGTTTCTCCA 80590 || | |||| | |||||| ||||| ||| ||| | || |||||||||| |||||||||| TAATTTTTTC AAGGAAATGA AACTTCCTTC TATCCTCAGC AATTGCATCT AGTTTCTCCA 549 TAATCTTTTT CATCCTTTTC CCAATCTTGT GACGGAAAGT GATAACGTTT GGATGATAAC 80530 | |||| ||| |||||||||| ||||| |||| |||||||| | ||||| | |||||| || TTATCTCTTT CATCCTTTTC CCAATTTTGT GACGGAAATT GATAATTCCT GGATGAAAAA 609 ACCCATATTT ATTCTTCTTC TGTATAATTG GTGCCTCAGT TTTACATTCG TCCAAGATGT 80470 |||| || | || || | || ||| ||||||| | |||||||||| |||| || | ACCC-TAATC GAGATTGCTC -GAAT-CTTG TTGCCTCATT TTTACATTCG CCCAATATAT 666 CATCAGCTTC ATATGCAGCA CCATTGAGTT TCTGCAACCA ATTTTCAATT GCCTTGTCCT 80410 ||||| |||| |||||||||| |||||||| |||||||||| ||| |||||| | |||||||| CATCAACTTC ATATGCAGCA GAATTGAGTT TCTGCAACCA ATTCTCAATT GACTTGTCCT 726 TCAATTGCTT CAACTGAGCA TCTTGTACCA CAGCTTGGAT TGTAGTAAAC GTGCTTTGAA 80350 |||||||||| | ||||||| ||||||| || ||||||| || ||| | |||| || | TCAATTGCTT CTCCTGAGCA TCTTGTAGCA CAGCTTGAAT TGTGGAAAAC ACACTCGACA 786 GCTTTTCGAA CTCATCCTTA AAACCAAGAA TCAATCCAAG TTCCCCTTGG ATGAAACAAG 80290 ||||||| || || | | ||||| | || ||||| |||| || ||| | |||||| ||| GCTTTTCAAA TTCCTTTTCG AAACCGAAAA TCAATACAAG TTTTCCTCCG ATGAAAGAAG 846 TCAGATTCTC TAACATAATT TGAAGGAAAG CTTCAGCCAT AGAGTATATT TTTGAAATGA 80230 | ||||| || || || || | ||||| |||| |||| ||||| | TGAGATTTTC TAGCACAACT TGAAGAAAAG CTTCCGCCAT -GT....... .......... 888 AGTAAGGTGT TGGAAATTAG AATGGACTTG TAACAATTAC AAACTCAATT ATTCAATGGA 80170 .......... .......... .......... .......... .......... .......... 888 AATAACACAC ACTCCCACGG GACCATGTCT ATCAAATTTA CTACCATATG CAATTACTAT 80110 .......... .......... .......... .......... .......... .......... 888 TAAACAGTAC TCCTTTCGTC TCATTTTATA TGAATTAATT TGACTTCACA CGAAAAATTT 80050 .......... .......... .......... .......... .......... .......... 888 AGGAAAGAAA TATTACTCCC CATGTCTCAA TTTATGTGAC ACTTTTCGTT TTTCCAATGG 79990 .......... .......... .......... .......... .......... .......... 888 ACAAGTCAAA TCATTTGTTC GTTATAAGAG TGCACAATTA AATATATTAC CGTCTTATCA 79930 .......... .......... .......... .......... .......... .......... 888 ACAATCTATA TATATACATA TAATTTTTTT TAAAAAGAAT ATATCGGGTG CAGGTGGATT 79870 | ||| .......... .......... .......... .......... .......... ...ATTGATG 895 CACCTCTGAC CA 79858 | |||| || AAATATTGAC CA 907 hqPGS_C08SLe0082C24.1-_SGN-U338250- (84445 84380,82905 82819,82474 82449,81923 81905,81440 81417,80664 80247) ******************************************************************************** EST sequence 6 -strand 1301 n (File: SGN-U344665-) 1 GCNNNNTATT TTTTGCGCCC TCTCTAAGGG GAAATGGCCC CCGCCCCCCC CCCAGAAAAA 61 TAATTNNTNT NTTGTTTATT TNNTTNTAAA TCCCCCTCTG TTGGAAGTTA ATTGGATTAA 121 TTTGGGGAAT TGAATTCCCT TCATTTAAGT ATTATTCCAA ATCCATTAGG CTTACGGATT 181 TTCCAGATTT GGAAATGGAA GCATTTTTGG AACATTTTTT TCCTATTTTT GCATTCACAA 241 TGGTTTCCCC CCATTGCACA ATTAAAAAAT TCCTAAATTG TTCAGGGTGT TTAGGGGACG 301 CATTCCTTCG GGTAAACATT TTAGCATTTT CCAGTGCTCA ACAAATAACT CTGCGAGTGA 361 AGTTCAACCT TTAACCCTTC CTCGGGATGA CTCTTTAGTG CGTCACAATA GTAAATTGTC 421 AAACTCTGCA AAGCATTGAG ACTAGCCAGG ATGGTAGGAA GCTCTTTGAG ATTCTTGTAG 481 TAAGAGATGG TCAAGTATTT GAGATTTGCA AGGCTTTTGA ATATCTCTTC TGGGAGTGAT 541 CTCGCTTGGC TGTTAGCACC AACACGGAGG GAAGTAAGAC TGCTAAAATT AGATATAGTG 601 CTCAAACCTG TTGCATGTGT GCCGCCATGA ACTTCTGATT TTTTGACAGA TGAAAGAGTT 661 GGAAAAACAA ACATAGGGCA ATATAGAATC TCCATCTCTT CAAGCATGGG GAATTTCTCT 721 CCACCCTCCT TTTTCACCAA TCCTTTCAAA TTGTCAAAGA ACCAAATACA AAGTCTTTTC 781 AGGGATGGAA ATCTTCTTCT TGTAGGGAAT CTAGAATGAT CATCCTCCTC CTCAAAATAC 841 TCAACCTCCG CAGACCCGTA TTGTAACTCT AGACTTTCTA ACAAGGCATC TCCAAAAAGG 901 GTGGTAAGCA CAAGCAGTTT TTGGAGCTTG TAATTCTAAT AGACACGACC TTCTCCAAAA 961 CTGAACGATT TATCCAGCTT GGAAAACAGA ATCCCCCAAA GGCAATGATT TCTAAATTTT 1021 TCAGACTGGG GTATGGTTTG AGGGCTTCAA GCACTTTAAC TTCTTTTGAT CCATATCTGT 1081 GTGGTCTGTC GATGTCCCAA CTCATGCTTA AAGAATGCGG ATTTGCTTTA ACAGATAAAT 1141 TGGCTTCTTT TGCATCCTTA TCATTTTTCA CTCTATCAAG ATATGTGATT GAAATTGATC 1201 CATAAAGATT TAGATTTTTT AGTTCACCAG GTTGATAGCC CTCGTGCCGA ATTCCTGCAG 1261 CCCGGGGGAT CCACTATTCT GAGCGGCCGC CCCGCGGATC C Predicted gene structure (within gDNA segment 88742 to 80531): Exon 1 86164 86146 ( 19 n); cDNA 184 201 ( 18 n); score: 0.684 Intron 1 86145 85338 ( 808 n); Pd: 0.912 (s: 0), Pa: 0.000 (s: 0) Exon 2 85337 85304 ( 34 n); cDNA 202 232 ( 31 n); score: 0.735 Intron 2 85303 83635 (1669 n); Pd: 0.900 (s: 0), Pa: 0.999 (s: 0) Exon 3 83634 83598 ( 37 n); cDNA 233 268 ( 36 n); score: 0.514 Intron 3 83597 83446 ( 152 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 83445 82515 ( 931 n); cDNA 269 1213 ( 945 n); score: 0.722 MATCH C08SLe0082C24.1- SGN-U344665- 0.722 1021 0.785 C PGS_C08SLe0082C24.1-_SGN-U344665- (86164 86146,85337 85304,83634 83598,83445 82515) Alignment (genomic DNA sequence = upper lines): CAGAGGTAAA ACATGCAAGG CACGTTTCCA GGACTCGTAT TACTATAAGT GGGAAATTCT 86105 |||| | | | ||| ||| CAGATTTGGA A-ATGGAAG. .......... .......... .......... .......... 201 AAAGTGAAAA GTTGAATTAT CATTTTGGCC TTGTACTAAA TTGAAATTTG ATTAATTAGT 86045 .......... .......... .......... .......... .......... .......... 201 TAATTTAAAT ATCACATTGT CTCATTTTAA TAAAAATATT AATAACTTTT GTACTTCCTT 85985 .......... .......... .......... .......... .......... .......... 201 AGATTAATTT CTAATTAAAA TATCTAATTT AAATAATATT TATCATCTAT TATCTATATG 85925 .......... .......... .......... .......... .......... .......... 201 TATATTTAAT TTAATCTCCA TCATATCATA TAATCAGCAT AATAATAATA ATAATAATAA 85865 .......... .......... .......... .......... .......... .......... 201 TGATAATAAT AATAATAATA GTAATAATAA TAATAATAAT AATAATAATA ATAATATACT 85805 .......... .......... .......... .......... .......... .......... 201 AACAGTGAAA GCAATATTAG GCAAAAATTA GATTACATTT TGTCCCTATA TCATATATAA 85745 .......... .......... .......... .......... .......... .......... 201 ATATTAATCG TCTAATAAAT TGTTAACTGA ATATTAAATA GTAAATTTTA ATTACTATAA 85685 .......... .......... .......... .......... .......... .......... 201 GGGAGGATTA CACATTAAGC AATATCAAAT TTATCAAATT CTTTCGGTTA CAATTTATTT 85625 .......... .......... .......... .......... .......... .......... 201 ATGTTGATGG TTAATTAATA TTAAATTGTT AGAAACAATT ATTATCAAGA AGACAAAAAG 85565 .......... .......... .......... .......... .......... .......... 201 ACCCCCAACG ATATTGTTCA ATGAATTAAA GGTGAAGACT AAAGGTTACA AAATTAATTA 85505 .......... .......... .......... .......... .......... .......... 201 GGAAACTGAT ATGTATCTTT TATTTTTTTC CTTTCATCTC CCCTCACCTA AAATTTTCCT 85445 .......... .......... .......... .......... .......... .......... 201 ATTTAAAGTC ACCTAGAAAT GAAAATTACT TTACAAATCT CATCTGATCT TCTTACTAAA 85385 .......... .......... .......... .......... .......... .......... 201 GTATGTTAAT ATGTCAATTC TCTCTTATAA ATTATGATCC ATTTTCTCTT TTTTGGTATA 85325 | | |||||| | | .......... .......... .......... .......... .......CAT TTTTGG-A-A 212 TCATTTCTTT CTTCTTTTTT AATTTCCTTT CTGATCATAG TCATAGACTG CTGAAGAAAA 85265 ||||| ||| | | ||||| -CATTTTTTT CCTATTTTTG C......... .......... .......... .......... 232 GTTGTCATCA ATCTTTATAG AATTGTTAAG GACAATAACA TTATTGTTGT ATTCGGATCG 85205 .......... .......... .......... .......... .......... .......... 232 AAGACATTAT GATTAATTGA TTGATTAATT GTAAAGAATG TTTAAAAGAA AATAATTTTT 85145 .......... .......... .......... .......... .......... .......... 232 TTTATCACGT TATATGAATT ATCACAAAAT AATGAATGTT TGTACTATTT TATGTAAAAT 85085 .......... .......... .......... .......... .......... .......... 232 GATTATAGCT ATTACCATTT GAAGTTATTT TCATATTAGT TTTAAATGTT CTTTTATAAT 85025 .......... .......... .......... .......... .......... .......... 232 GTTTCTCTTC TTATTCATTT TAAGTTAAAT ATGTTCTCTA TTTATATAAA GAAGTTTATG 84965 .......... .......... .......... .......... .......... .......... 232 TTTAAATAAT TAAATAGATG TTACTTATTT AGACTTTATA TAATTATTGG CGTAAAATAT 84905 .......... .......... .......... .......... .......... .......... 232 GTACAATACT ATATTTCTTA TTTCCAAATC AAATTTAAAA TTGTCTCAAT GATATATTAG 84845 .......... .......... .......... .......... .......... .......... 232 ATATTTTATT ATATGTTTGA AATATTTGAC AGATATGTTG ACTGACTATG CATGCATTTA 84785 .......... .......... .......... .......... .......... .......... 232 TAATTATTTC ATTATCTCAT AAATTAGTAT CTGTTTCATG TACTTCTTAT CCCCCTCTTT 84725 .......... .......... .......... .......... .......... .......... 232 TCTTACTTTT AAATACTCAT TTGCAATTCA ATATATGTAT CGATTTGAAA GATTACTAAC 84665 .......... .......... .......... .......... .......... .......... 232 ATTAGCTTAT GAATTACATG TATATTTACT TTTTTATGTA TATTTTATTT TTTAAGTTAT 84605 .......... .......... .......... .......... .......... .......... 232 GACATATAGC AAATCCAACA ATATATGTAC CATTTACAAA TTAATTTTAG TACAAAATTT 84545 .......... .......... .......... .......... .......... .......... 232 ATATTAAGTA GTTTAAAATA AACGTGCAAC GCACGTTTTG AAGACTAGTG TATATATATA 84485 .......... .......... .......... .......... .......... .......... 232 TATATATATA TATATATATT ATGCTACATA TGACTTAACT ATGTACTTGT TCAATTATAT 84425 .......... .......... .......... .......... .......... .......... 232 ACAAGTTAAA ATATCAAATT ATGTGTATAT TCAAATTTGA AGGATATAAA TATAAAATAA 84365 .......... .......... .......... .......... .......... .......... 232 AATAAAATTA AAAGACATAT TTATCTATTA TCTTGTTTAT TGTTTATTGC CTGCTCCATT 84305 .......... .......... .......... .......... .......... .......... 232 TTGCTTTTCA GGAACTAGTG GTTGTCATTT TAGTATTTGT ATGCCTTTAT TTCAATGATT 84245 .......... .......... .......... .......... .......... .......... 232 TTTTTTTGCT CATATGTTAG TTTGTAGGTT TGATATTGTT AGTTGCCTGG AAGAGTTGAA 84185 .......... .......... .......... .......... .......... .......... 232 TTTTGTTTTT TTTAGCATCT TTTCTAAGTA AGAAGATTGA ACTGTAGTAA GCTGATATCC 84125 .......... .......... .......... .......... .......... .......... 232 AGAGCTTTAA ACTTTCAAAT TATATTTTGT TATGACTTGA ATCTTGAATA TAAATGTGTG 84065 .......... .......... .......... .......... .......... .......... 232 TCTATGCAGC ATGGCAGGGT TATAGTATTT TAAAACATGC ATTGTGGCTT TATTTGCTTT 84005 .......... .......... .......... .......... .......... .......... 232 CATTTATCTT GGCTGCCCTT TCTTCTATTT GATTTACATT GCCTTAGTTA TGCGTATAAA 83945 .......... .......... .......... .......... .......... .......... 232 TGCAGAATTG TTTTTATCGT TGACTGTTTT TCTTTATGTT TCCTTTTGAT CCGTTTCACG 83885 .......... .......... .......... .......... .......... .......... 232 TGCATTCGCC ATGACTCCTA ACGGATTTCG CCCGTATCCC TGCACTTCCT CGCTGAGCCG 83825 .......... .......... .......... .......... .......... .......... 232 TAAGGGCTCA AACCTCCTCC TCAAGTCTTA GACCCTCACA ACTGGCGTAC AGGTTGAACA 83765 .......... .......... .......... .......... .......... .......... 232 CAAAAAAACG AGCTGCTGGA AATTAATTTA CAGGTCGGAA GAATCAGCAA GTGTGTTGCT 83705 .......... .......... .......... .......... .......... .......... 232 GGAAAATCAA ATCTACAGAT TTGAGCAGCA GTATACATAT TGTATACATT TGTTATACAC 83645 .......... .......... .......... .......... .......... .......... 232 TGATATACAG GTTGAAAGGC GTATACGAAC AAATGCAGGG CTCAAAAGTC CAATACGAAT 83585 || | | || | | | | |||| | |||| .......... ATTCACAATG GT-TTCCCCC CATTGCACAA TTAAAAA... .......... 268 TGGTTACAAA TAGTTGATTT GTTTCCAAAA GAAAAATCAG AAAATTACAT CTCATTAGTA 83525 .......... .......... .......... .......... .......... .......... 268 ATAAGCAGAT GAGGAATGTG AGCAATTTTG TACCAGTCTT GTCCTATTCC CTTCTCACAC 83465 .......... .......... .......... .......... .......... .......... 268 CGCTTGGCCA GTGTTGGACA TTCCCTAACT GATAAATTTG -TTAGGTGCT GCAATCCCTC 83406 | |||| || | | | | || ||||| | ||| ||| || .......... .........A TTCCTAAATT GTTCAGGGTG TTTAGGGGAC GCATTCCTTC 309 CGGTAAACAT TTTAGCCTCT TACAATTTGT TATGGATAAT TCTGTGAGTG AAGTTAAACC 83346 ||||||||| |||||| | | | || | | |||| |||| ||||| ||||| |||| GGGTAAACAT TTTAGCATTT TCCAGTGCTC AACAAATAAC TCTGCGAGTG AAGTTCAACC 369 TTTCACCCCT TCCTCGGGGA GACTCTCGAG TGCGTCACAA TATTCAATTT TCAGATGCTT 83286 ||| | |||| |||||||| |||||| || |||||||||| || | |||| ||| | || TTT-AACCCT TCCTCGGGAT GACTCTTTAG TGCGTCACAA TAGTAAATTG TCAAACTCTG 428 CAAAGCATTG AGACTAGCCA GGCTGTTTGG CAGCTCTTTG AGATTGAAGA TGAAAGAGAT 83226 |||||||||| |||||||||| || || | || ||||||||| ||||| | | ||||||| CAAAGCATTG AGACTAGCCA GGATGGTAGG AAGCTCTTTG AGATTCTTGT AGTAAGAGAT 488 TTCCAAGTAT TTGAGATTTG CAAGGCTTTT GAACATCTCT TCTGGGAGCG AAGTAGCTGT 83166 ||||||| |||||||||| |||||||||| ||| |||||| |||||||| | | | ||| GGTCAAGTAT TTGAGATTTG CAAGGCTTTT GAATATCTCT TCTGGGAGTG ATCTCGCTTG 548 CAAGTTATGG CTAATGTTGA GGGAAGTAAG AGCCCTAAGA TTATATATGG ACCTCAAACC 83106 |||| | || || |||||||||| | |||| | ||| |||| | |||||||| GCTGTTAGCA CCAACACGGA GGGAAGTAAG ACTGCTAAAA TTAGATATAG TGCTCAAACC 608 TATTGCATCT GACATGTTCC GATTAACTAC CAATTTCTTG ACAGAAGAAA GGGTCGGAAT 83046 | |||||| | | || | || |||| | |||| ||| ||||| |||| | || |||| TGTTGCATGT G---TGCCGC CATGAACTTC TGATTTTTTG ACAGATGAAA GAGTTGGAAA 665 AACAAGCACA GGACACCAGC TAATTGTCAT CTCTTCAAGC ACGGGGAATT GCTCTTCTCC 82986 ||||| || | || || | ||| ||| |||||||||| | |||||||| |||| | || AACAAACATA GGGCAATATA GAATCTCCAT CTCTTCAAGC ATGGGGAATT TCTCTCCACC 725 TGCCTCTTTC AGCAATCCTT TCAGATTATC GAAATTGACT ATAATAAGTT TTCTCAGAGA 82926 ||| |||| | |||||||| ||| ||| || || ||| |||| || |||| || CTCCTTTTTC ACCAATCCTT TCAAATTGTC AAAGAACCAA ATACAAAGTC TTTTCAGGGA 785 TGGAAACCTT CTTCTTGTAG GGAATC---C A-GA--A--- T-CT--TCAA CATACTCCAG 82878 |||||| ||| |||||||||| |||||| | || | | || |||| |||||| | TGGAAATCTT CTTCTTGTAG GGAATCTAGA ATGATCATCC TCCTCCTCAA AATACTCAAC 845 TTCCGCAGAC CCATCTCCTA ACTCTAGACT TTCAAGACAA GGCAGATCAC CAAACGGTGG 82818 ||||||||| || | | || |||||||||| ||| | |||| |||| || ||| ||||| CTCCGCAGAC CCGTATTGTA ACTCTAGACT TTCTA-ACAA GGCATCTCCA AAAAGGGTGG 904 TAAGCATGAG CAGTTTTCAC AACCTCTAAT TGCAATAGAG ACAACATTTT TCAAAACTGA 82758 |||||| || ||||||| | | | |||| | |||||| || || || | ||||||||| TAAGCACAAG CAGTTTTTGG AGCTTGTAAT TCTAATAGAC ACGACCTTCT CCAAAACTGA 964 GTGATTCATC CACTTTGGAA GACGGAATCC TCTGAAGCCA GTGATTGTTA AACCAGTCAC 82698 |||| ||| || |||||| || |||||| | ||| || ||||| || || ||| ACGATTTATC CAGCTTGGAA AACAGAATCC CCCAAAGGCA ATGATTTCTA AATTTTTCAG 1024 ATTGGAGTGT GGTTTGAGGG CTTCAAGCAC TTCAACTTCT TCTGATTCAT ATC--TAT-G 82641 | ||| || | |||||||||| |||||||||| || ||||||| | |||| ||| ||| | | | ACTGGGGTAT GGTTTGAGGG CTTCAAGCAC TTTAACTTCT TTTGATCCAT ATCTGTGTGG 1084 -CCGTC-CT- TTCCAAGTCA TGCTTAAAGA ATGCAGATTT TCTTTTGCAG ATAAATTGGC 82584 | ||| | | |||| ||| |||||||||| |||| ||||| |||| ||| |||||||||| TCTGTCGATG TCCCAACTCA TGCTTAAAGA ATGCGGATTT GCTTTAACAG ATAAATTGGC 1144 TTCTTTTGCA TCCCTATCAT TCTTCACTCT CTCAAGATGC GTGATTTCAA TTGACCCATA 82524 |||||||||| ||| |||||| | |||||||| ||||||| |||||| || |||| ||||| TTCTTTTGCA TCCTTATCAT TTTTCACTCT ATCAAGATAT GTGATTGAAA TTGATCCATA 1204 CAAATTCAG 82515 | ||| || AAGATTTAG 1213 hqPGS_C08SLe0082C24.1-_SGN-U344665- (85337 85304,83634 83598,83445 82515) ******************************************************************************** EST sequence 24 -strand 734 n (File: SGN-U331884-) 1 CAACATACTC CACCTCCGCA GACCCACTCC ATAACTCTAG ACTTTCTAGA CAAGGCAGAT 61 CACCAAACGG TGGTAAGCAT GAGCAGTTTT CACAACCTTT AATTGCAATA GAGACAACAT 121 TTTTCAAAAC TGAGTGATTC ATCCACTCTG GGAGACGGAT TCCTCTGAAG CCAGTGATTG 181 TTGAACAAGT CATATTGGAG TGTGGTTTGA GGGCTTCAAG CACTTCAACT TCTTCTGATT 241 CATATCTATG TGGTCCTTTC CATTCCATGC TTAAAGAATG CAGATTTTCT TCTGCAGATA 301 AATTGGCTTC TTTTGCATCC CTATCATTCT TCACTCTCTC AAGATGCGTG ATTTCAATTG 361 ACCCATACAG ATTCAGGTTT CGTAATTCAC CAAGTGGACA ACTTTTCCTC CTCCCCACTG 421 CAAATCTACT TAGAGTCTTA AGGCATGTCA AAGATCCTAT CCTTGGTGGC ATAGAATCCA 481 ATTCAAAGCA AACATCAAGT AAAAGATTTC TGAGACTGCT AAGTTGACTT GTTTGATTTG 541 GCAAACAACA AAGTGACCAG CAATTCTGTA GATTAAGAGT CTGCAGATTT TGAAGCTTGC 601 ATAACTGCTC TGGAAGACTA CGCATGTTAT TGAGAGAGAG GTTCAAGTAT CTTAAATGTA 661 CTAGATCTCC AATGGAAGAC GGTAAACGCT TAAGACTTAA ATTACTTAGA TTAAGCACCC 721 TCAACGACAC AAAC Predicted gene structure (within gDNA segment 83923 to 81037): Exon 1 82890 82159 ( 732 n); cDNA 1 734 ( 734 n); score: 0.905 MATCH C08SLe0082C24.1- SGN-U331884- 0.905 732 0.997 C PGS_C08SLe0082C24.1-_SGN-U331884- (82890 82159) Alignment (genomic DNA sequence = upper lines): CAACATACTC CAGTTCCGCA GACCCATCTC CTAACTCTAG ACTTTCAAGA CAAGGCAGAT 82831 |||||||||| || |||||| |||||| | ||||||||| |||||| ||| |||||||||| CAACATACTC CACCTCCGCA GACCCACTCC ATAACTCTAG ACTTTCTAGA CAAGGCAGAT 60 CACCAAACGG TGGTAAGCAT GAGCAGTTTT CACAACCTCT AATTGCAATA GAGACAACAT 82771 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CACCAAACGG TGGTAAGCAT GAGCAGTTTT CACAACCTTT AATTGCAATA GAGACAACAT 120 TTTTCAAAAC TGAGTGATTC ATCCACTTTG GAAGACGGAA TCCTCTGAAG CCAGTGATTG 82711 |||||||||| |||||||||| ||||||| || | ||||||| |||||||||| |||||||||| TTTTCAAAAC TGAGTGATTC ATCCACTCTG GGAGACGGAT TCCTCTGAAG CCAGTGATTG 180 TTAAACCAGT CACATTGGAG TGTGGTTTGA GGGCTTCAAG CACTTCAACT TCTTCTGATT 82651 || ||| ||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACAAGT CATATTGGAG TGTGGTTTGA GGGCTTCAAG CACTTCAACT TCTTCTGATT 240 CATATCTATG CCGTCCTTTC CAAGTCATGC TTAAAGAATG CAGATTTTCT TTTGCAGATA 82591 |||||||||| |||||||| || ||||| |||||||||| |||||||||| | |||||||| CATATCTATG TGGTCCTTTC CATTCCATGC TTAAAGAATG CAGATTTTCT TCTGCAGATA 300 AATTGGCTTC TTTTGCATCC CTATCATTCT TCACTCTCTC AAGATGCGTG ATTTCAATTG 82531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGCTTC TTTTGCATCC CTATCATTCT TCACTCTCTC AAGATGCGTG ATTTCAATTG 360 ACCCATACAA ATTCAGGTTT CGTAATTCAC CAAGTAGAGA ATCTTTTCT- CTCGCCAATA 82472 ||||||||| |||||||||| |||||||||| ||||| || | | ||| || ||| ||| | ACCCATACAG ATTCAGGTTT CGTAATTCAC CAAGTGGACA ACTTTTCCTC CTCCCCACT- 419 ACAAAGAAAC TTAGAGTCTT AAGGCATGTC AAAGATCCTA TCCTTGGTGG CATAGAATCC 82412 |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATCTAC TTAGAGTCTT AAGGCATGTC AAAGATCCTA TCCTTGGTGG CATAGAATCC 479 AATCCATCGC AACCATCAAG TAAGAGATTT CGGAGACTAC CAAGTTTACT TGTTTCTTTT 82352 ||| || || || ||||||| ||| |||||| | |||||| | ||||| ||| ||||| ||| AATTCAAAGC AAACATCAAG TAAAAGATTT CTGAGACTGC TAAGTTGACT TGTTTGATTT 539 GGCAAACAAC AAAGTGACCA GCAATACTCT ACATTAAGAG TCTGCAGATT TTGAAGCTTG 82292 |||||||||| |||||||||| ||||| || | | |||||||| |||||||||| |||||||||| GGCAAACAAC AAAGTGACCA GCAATTCTGT AGATTAAGAG TCTGCAGATT TTGAAGCTTG 599 CATAACTGCT TTGGAAGAGT ACGCATGTTA TT--GAGAGA GGTTCAAGTA TCTTAAATGT 82234 |||||||||| ||||||| | |||||||||| || |||||| |||||||||| |||||||||| CATAACTGCT CTGGAAGACT ACGCATGTTA TTGAGAGAGA GGTTCAAGTA TCTTAAATGT 659 ACTAGATCTC CAATGGAGGA CGGTAACTGC TTAAGTCCCA TGGAACTTAG ATTAAGAACC 82174 |||||||||| ||||||| || |||||| || ||||| | | |||||| |||||| ||| ACTAGATCTC CAATGGAAGA CGGTAAACGC TTAAGACTTA AATTACTTAG ATTAAGCACC 719 CTCAATGAGA CAAAC 82159 ||||| || | ||||| CTCAACGACA CAAAC 734 hqPGS_C08SLe0082C24.1-_SGN-U331884- (82890 82159) ******************************************************************************** EST sequence 40 +strand 742 n (File: SGN-U329022+) 1 TTTATATCCC AAGAAACTTC AGCCTTGGGG CCTTGGGGGT TATAATTTCC CTCCCCCCCC 61 CCCCCCCCGT CCAAAATTTT ATTTATTGAT ATTTAAGTTC TAGGCAGAAA GTAAACTCTT 121 TTACTGATTA GACAAAAAGT AAACACTAAA AAGAGTTCAT TTTATATGCA CAAAAACACA 181 GATAGGAGTA CTTCAGACAA TGTTGAGCAA TTTTATATCA ACAAGAGTTG ATCTTATATA 241 AATTATAATA GCAACAAAGG TCAAACGTGC AAGGCACGTT TTCAGAACTC GTACAATTAT 301 ATATGAAAGA ACTCAGTTCA TATACCTCTC ATAAAGCGTA ACGGCGTGCA AACTTTCTTC 361 TCAGTTGTAT TAAGGGTGTG CAAAATTAAA TATACCACAT AATTTTTCGG AATAAGGTAT 421 GCACTGGACC ACCCTTCACC TAAGGTGGCT CCGCCCATGT ACTTTATAAT ATAGAATTAT 481 CCAATTTATG GCATTTTCAG CTATTATTAA ACAGATATTG TGTCTTTACC TCTACATATT 541 GCTCTGATGA AGGTGCCACA GTATAATAGG GTCTTTCGTG GCAAATTCCA TGTCCATGCC 601 CTTGGAACTT CAATTGGTTG TTGAGTGGAC TCTTCATCTG CAAAAATCTG TGTAGATCAC 661 ATCATTAGTA TTTCTCGAAC AAAGAGTTAT ATGTGAAATG GTTGCATGAT TGAATACATT 721 AGCATGAAAT GAAGAATAGA AA Predicted gene structure (within gDNA segment 87133 to 80487): Exon 1 86461 86410 ( 52 n); cDNA 1 51 ( 51 n); score: 0.865 Intron 1 86409 86367 ( 43 n); Pd: 0.186 (s: 0.86), Pa: 0.000 (s: 0.66) Exon 2 86366 86118 ( 249 n); cDNA 52 301 ( 250 n); score: 0.831 Intron 2 86117 83635 (2483 n); Pd: 0.000 (s: 0.82), Pa: 0.999 (s: 0) Exon 3 83634 83627 ( 8 n); cDNA 302 309 ( 8 n); score: 0.750 MATCH C08SLe0082C24.1- SGN-U329022+ 0.837 309 0.416 C PGS_C08SLe0082C24.1-_SGN-U329022+ (86461 86410,86366 86118,83634 83627) Alignment (genomic DNA sequence = upper lines): TTTATGTTCC AAGAAACTTC AGCCTTGGGG CATTGGGGGT TATAATTTTT GAGTGATAAT 86402 ||||| | || |||||||||| |||||||||| | |||||||| ||||| ||| TTTATATCCC AAGAAACTTC AGCCTTGGGG CCTTGGGGGT TATAA-TTTC CC........ 51 TCTAATTAGT AAAAATATTG TTCTAGCCTT ATAAGTTGTT CATTATACCC CCCTCCGAAA 86342 | | ||| || ||| ||| .......... .......... .......... .....TCCCC CCCCCCCCCC CCGTCCAAAA 76 TTTT-TTTGT TGATATTTAA GTTTTAGGCA GAAAATAAAC TCTTTTACTG ATTAGGCAGA 86283 |||| ||| | |||||||||| ||| |||||| |||| ||||| |||||||||| ||||| || | TTTTATTTAT TGATATTTAA GTTCTAGGCA GAAAGTAAAC TCTTTTACTG ATTAGACAAA 136 AGGTAAACAC TAAAAAGAGT TTATTTTATA TGCACAAAAA TACAGACAGG AATACTTCAG 86223 | |||||||| |||||||||| | |||||||| |||||||||| ||||| ||| | |||||||| AAGTAAACAC TAAAAAGAGT TCATTTTATA TGCACAAAAA CACAGATAGG AGTACTTCAG 196 ACAATGTTGA ATAATTTT-T ATCAACAAGA GTTGATCCTA TATAAAATTT TAACAGTAAC 86164 |||||||||| |||||| | |||||||||| ||||||| || ||| ||||| ||| || ||| ACAATGTTGA GCAATTTTAT ATCAACAAGA GTTGATCTTA TAT-AAATTA TAATAGCAAC 255 AGAGGTAAAA CATGCAAGGC ACGTTTCCAG GACTCGTATT ACTATAAGTG GGAAATTCTA 86104 | |||| ||| | |||||||| |||||| ||| ||||||| | |||| AAAGGTCAAA CGTGCAAGGC ACGTTTTCAG AACTCGTACA ATTATA.... .......... 301 AAGTGAAAAG TTGAATTATC ATTTTGGCCT TGTACTAAAT TGAAATTTGA TTAATTAGTT 86044 .......... .......... .......... .......... .......... .......... 301 AATTTAAATA TCACATTGTC TCATTTTAAT AAAAATATTA ATAACTTTTG TACTTCCTTA 85984 .......... .......... .......... .......... .......... .......... 301 GATTAATTTC TAATTAAAAT ATCTAATTTA AATAATATTT ATCATCTATT ATCTATATGT 85924 .......... .......... .......... .......... .......... .......... 301 ATATTTAATT TAATCTCCAT CATATCATAT AATCAGCATA ATAATAATAA TAATAATAAT 85864 .......... .......... .......... .......... .......... .......... 301 GATAATAATA ATAATAATAG TAATAATAAT AATAATAATA ATAATAATAA TAATATACTA 85804 .......... .......... .......... .......... .......... .......... 301 ACAGTGAAAG CAATATTAGG CAAAAATTAG ATTACATTTT GTCCCTATAT CATATATAAA 85744 .......... .......... .......... .......... .......... .......... 301 TATTAATCGT CTAATAAATT GTTAACTGAA TATTAAATAG TAAATTTTAA TTACTATAAG 85684 .......... .......... .......... .......... .......... .......... 301 GGAGGATTAC ACATTAAGCA ATATCAAATT TATCAAATTC TTTCGGTTAC AATTTATTTA 85624 .......... .......... .......... .......... .......... .......... 301 TGTTGATGGT TAATTAATAT TAAATTGTTA GAAACAATTA TTATCAAGAA GACAAAAAGA 85564 .......... .......... .......... .......... .......... .......... 301 CCCCCAACGA TATTGTTCAA TGAATTAAAG GTGAAGACTA AAGGTTACAA AATTAATTAG 85504 .......... .......... .......... .......... .......... .......... 301 GAAACTGATA TGTATCTTTT ATTTTTTTCC TTTCATCTCC CCTCACCTAA AATTTTCCTA 85444 .......... .......... .......... .......... .......... .......... 301 TTTAAAGTCA CCTAGAAATG AAAATTACTT TACAAATCTC ATCTGATCTT CTTACTAAAG 85384 .......... .......... .......... .......... .......... .......... 301 TATGTTAATA TGTCAATTCT CTCTTATAAA TTATGATCCA TTTTCTCTTT TTTGGTATAT 85324 .......... .......... .......... .......... .......... .......... 301 CATTTCTTTC TTCTTTTTTA ATTTCCTTTC TGATCATAGT CATAGACTGC TGAAGAAAAG 85264 .......... .......... .......... .......... .......... .......... 301 TTGTCATCAA TCTTTATAGA ATTGTTAAGG ACAATAACAT TATTGTTGTA TTCGGATCGA 85204 .......... .......... .......... .......... .......... .......... 301 AGACATTATG ATTAATTGAT TGATTAATTG TAAAGAATGT TTAAAAGAAA ATAATTTTTT 85144 .......... .......... .......... .......... .......... .......... 301 TTATCACGTT ATATGAATTA TCACAAAATA ATGAATGTTT GTACTATTTT ATGTAAAATG 85084 .......... .......... .......... .......... .......... .......... 301 ATTATAGCTA TTACCATTTG AAGTTATTTT CATATTAGTT TTAAATGTTC TTTTATAATG 85024 .......... .......... .......... .......... .......... .......... 301 TTTCTCTTCT TATTCATTTT AAGTTAAATA TGTTCTCTAT TTATATAAAG AAGTTTATGT 84964 .......... .......... .......... .......... .......... .......... 301 TTAAATAATT AAATAGATGT TACTTATTTA GACTTTATAT AATTATTGGC GTAAAATATG 84904 .......... .......... .......... .......... .......... .......... 301 TACAATACTA TATTTCTTAT TTCCAAATCA AATTTAAAAT TGTCTCAATG ATATATTAGA 84844 .......... .......... .......... .......... .......... .......... 301 TATTTTATTA TATGTTTGAA ATATTTGACA GATATGTTGA CTGACTATGC ATGCATTTAT 84784 .......... .......... .......... .......... .......... .......... 301 AATTATTTCA TTATCTCATA AATTAGTATC TGTTTCATGT ACTTCTTATC CCCCTCTTTT 84724 .......... .......... .......... .......... .......... .......... 301 CTTACTTTTA AATACTCATT TGCAATTCAA TATATGTATC GATTTGAAAG ATTACTAACA 84664 .......... .......... .......... .......... .......... .......... 301 TTAGCTTATG AATTACATGT ATATTTACTT TTTTATGTAT ATTTTATTTT TTAAGTTATG 84604 .......... .......... .......... .......... .......... .......... 301 ACATATAGCA AATCCAACAA TATATGTACC ATTTACAAAT TAATTTTAGT ACAAAATTTA 84544 .......... .......... .......... .......... .......... .......... 301 TATTAAGTAG TTTAAAATAA ACGTGCAACG CACGTTTTGA AGACTAGTGT ATATATATAT 84484 .......... .......... .......... .......... .......... .......... 301 ATATATATAT ATATATATTA TGCTACATAT GACTTAACTA TGTACTTGTT CAATTATATA 84424 .......... .......... .......... .......... .......... .......... 301 CAAGTTAAAA TATCAAATTA TGTGTATATT CAAATTTGAA GGATATAAAT ATAAAATAAA 84364 .......... .......... .......... .......... .......... .......... 301 ATAAAATTAA AAGACATATT TATCTATTAT CTTGTTTATT GTTTATTGCC TGCTCCATTT 84304 .......... .......... .......... .......... .......... .......... 301 TGCTTTTCAG GAACTAGTGG TTGTCATTTT AGTATTTGTA TGCCTTTATT TCAATGATTT 84244 .......... .......... .......... .......... .......... .......... 301 TTTTTTGCTC ATATGTTAGT TTGTAGGTTT GATATTGTTA GTTGCCTGGA AGAGTTGAAT 84184 .......... .......... .......... .......... .......... .......... 301 TTTGTTTTTT TTAGCATCTT TTCTAAGTAA GAAGATTGAA CTGTAGTAAG CTGATATCCA 84124 .......... .......... .......... .......... .......... .......... 301 GAGCTTTAAA CTTTCAAATT ATATTTTGTT ATGACTTGAA TCTTGAATAT AAATGTGTGT 84064 .......... .......... .......... .......... .......... .......... 301 CTATGCAGCA TGGCAGGGTT ATAGTATTTT AAAACATGCA TTGTGGCTTT ATTTGCTTTC 84004 .......... .......... .......... .......... .......... .......... 301 ATTTATCTTG GCTGCCCTTT CTTCTATTTG ATTTACATTG CCTTAGTTAT GCGTATAAAT 83944 .......... .......... .......... .......... .......... .......... 301 GCAGAATTGT TTTTATCGTT GACTGTTTTT CTTTATGTTT CCTTTTGATC CGTTTCACGT 83884 .......... .......... .......... .......... .......... .......... 301 GCATTCGCCA TGACTCCTAA CGGATTTCGC CCGTATCCCT GCACTTCCTC GCTGAGCCGT 83824 .......... .......... .......... .......... .......... .......... 301 AAGGGCTCAA ACCTCCTCCT CAAGTCTTAG ACCCTCACAA CTGGCGTACA GGTTGAACAC 83764 .......... .......... .......... .......... .......... .......... 301 AAAAAAACGA GCTGCTGGAA ATTAATTTAC AGGTCGGAAG AATCAGCAAG TGTGTTGCTG 83704 .......... .......... .......... .......... .......... .......... 301 GAAAATCAAA TCTACAGATT TGAGCAGCAG TATACATATT GTATACATTT GTTATACACT 83644 .......... .......... .......... .......... .......... .......... 301 GATATACAGG TTGAAAG 83627 |||||| .........T ATGAAAG 309 hqPGS_C08SLe0082C24.1-_SGN-U329022+ (86461 86410,86366 86118) ******************************************************************************** EST sequence 28 +strand 826 n (File: SGN-U344226+) 1 ATTGAAACAA AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GAATTCGGCA CGAGCTTATT GTAGATGACC AATTTTTTCT TCGAATACGA 121 AATTAAATTA CAATACACAC AAAAAAAATA TTTGAATTTT TTTTATTTAA ACTAAGGAAT 181 GAAAGAAAAA AACAAAATAA GAATAAGAAA CTCAAATTAT TATAATAAAA GAAGTCAAAA 241 AATAATTTTT GTATGAAAAA ATTAAAATAT ACCTTGAACT TTGATAGAAG AATCATATAT 301 ATCCCTAAAT ATTTTTTTTA AAAAAAAATT AGAAGTAACA AATATAAATT TAAAACTAAT 361 TTTTTAACTT TCGTTAAATG AAGGGTATAT GTGAGCCATT TTCTAACGGC AGGGGTATAT 421 GTGAGCCGTT TGTATAACGA TAAGGGCATA TATGAACCAC TTTTATTACG AGGGATATAT 481 CAGCTCTAAA TGACAAAGTT GAGAGGTATA TCAGACCCTT TTCCCTATTT TTTAAAATTT 541 CATACCATTT GAAAAAAAAT CCTATGTTCT TCTCTTTACT ATTTTTGGAC ATATCATTCA 601 TGTATCGGTA CGAGATATAT CATTGGTGGT GTACCTTGTA TTAAACAAAA TAATGGATCG 661 AAATGTGAAT GTTTCGGAAC ATAAACAACG TTTCGAGAAG CATTGTATCA AAATATGGAG 721 GGATCATTTG GGTAGGTTTG TCTTGTTTTA ACAAGGGAAT GTATTGAGAC ACAATATATA 781 CATAACGTTT AAAGGAGGGT CGAAAACCCT AAATTTTAAT TTTTAG Predicted gene structure (within gDNA segment 92047 to 84979): Exon 1 90463 90021 ( 443 n); cDNA 86 525 ( 440 n); score: 0.906 Intron 1 90020 88035 (1986 n); Pd: 0.929 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 88034 88006 ( 29 n); cDNA 526 553 ( 28 n); score: 0.759 Intron 2 88005 87715 ( 291 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.54) Exon 3 87714 87644 ( 71 n); cDNA 554 623 ( 70 n); score: 0.556 Intron 3 87643 86707 ( 937 n); Pd: 0.000 (s: 0.54), Pa: 0.989 (s: 0) Exon 4 86706 86676 ( 31 n); cDNA 624 653 ( 30 n); score: 0.613 MATCH C08SLe0082C24.1- SGN-U344226+ 0.858 574 0.695 C PGS_C08SLe0082C24.1-_SGN-U344226+ (90463 90021,88034 88006,87714 87644,86706 86676) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACTAAATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACAC-AAA 90405 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||||| ||| TTATTGTAGA TGAC-CAATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 144 AAAATAGTTT AATTTTTCAC TCTCTTTAAA CTAAGGAATG AAAGAAAAAA AACAAAATAA 90345 |||||| || ||||||| | | |||||| |||||||||| |||| ||||| |||||||||| AAAATATTTG AATTTTT--- TTTATTTAAA CTAAGGAATG AAAG-AAAAA AACAAAATAA 200 GAATAAGAAA CTCAAATAAT TATAATAAAA GAAGTCAAAA AATAGTTTAT GTATGAAAAA 90285 |||||||||| ||||||| || |||||||||| |||||||||| |||| ||| | ||||| |||| GAATAAGAAA CTCAAATTAT TATAATAAAA GAAGTCAAAA AATAATTTTT GTATG-AAAA 259 AATTAAAATA TACCTTGAAC TTTGATAGAA GAATCATATA TACCTCTAAA TAATTTTTTT 90225 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| || ||||||| AATTAAAATA TACCTTGAAC TTTGATAGAA GAATCATATA TATCCCTAAA TATTTTTTTT 319 -AAAAAAAAT TAGAAGT-AT AAATATAAAT TTAAAACTAA TTTTTTAATT TCCGTCAAAT 90167 ||||||||| ||||||| | |||||||||| |||||||||| |||||||| | | ||| |||| AAAAAAAAAT TAGAAGTAAC AAATATAAAT TTAAAACTAA TTTTTTAACT TTCGTTAAAT 379 TAAGGGTATA TGTGAGTCAT TTTATAACGA CAGGGGTATA TATGAGCCGT TTGTATAACG 90107 ||||||||| |||||| ||| ||| ||||| |||||||||| | |||||||| |||||||||| GAAGGGTATA TGTGAGCCAT TTTCTAACGG CAGGGGTATA TGTGAGCCGT TTGTATAACG 439 GTAAGGGCAT ATATGAGCCA CTTTTATAAC GAGGGATATA TTAGCTCCAA ATGACAAAGT 90047 ||||||||| |||||| ||| ||||||| || |||||||||| | ||||| || |||||||||| ATAAGGGCAT ATATGAACCA CTTTTATTAC GAGGGATATA TCAGCTCTAA ATGACAAAGT 499 TAAGGGGTAT ATCAGACTCT TTTCCCGTAA ACTTTTGTTT CTCATTCTCT TGTTCTCCTT 89987 | || ||||| ||||||| || |||||| TGAGAGGTAT ATCAGACCCT TTTCCC.... .......... .......... .......... 525 TGTAGTCTTT TGTGTTTTTT TAAAAAAAAT TAGCCACAAT GTTTAACTAT TTTATTTTTA 89927 .......... .......... .......... .......... .......... .......... 525 TATTATTTAT TTAAGGAAAA CTTAAAGTAA ATGAAACGAG AAAAAATAGT TTTTTAGTGA 89867 .......... .......... .......... .......... .......... .......... 525 GATTAAAGAA ATTTAATATA GTGTAATTAA ATAATTTTTG TGTTTGCTTA TAAAAAGATC 89807 .......... .......... .......... .......... .......... .......... 525 ATACATTAAT TTTTTAGGAG AATTTTTTAT TTTATTATTT TATTAATAAA TGATCTGTAA 89747 .......... .......... .......... .......... .......... .......... 525 TAATTTTGAT TATACGTATA ACCTTCTCTG AAGCTAAAAA AATTATTATA AATATTTTTT 89687 .......... .......... .......... .......... .......... .......... 525 TTGTTCTCTT TGTGAGTACT CGTGTTTCTC TTTATAATAA TTATTCTTTT TACTTTGTAA 89627 .......... .......... .......... .......... .......... .......... 525 TTTAATTTAT ATTTTTATTT AGATAAAATT GAAAGTGTTT TTTCATGTTC AAAATAACTC 89567 .......... .......... .......... .......... .......... .......... 525 ATAATTTAAT TGATTATTTT ATTTAAATAA AATATTAACA AGACATCTTT AATATATCAG 89507 .......... .......... .......... .......... .......... .......... 525 CCTTAAATCT TTAATTTTTG TAAGAATATA GTAAAATCAT TGGGAATTTT TATCAAATTT 89447 .......... .......... .......... .......... .......... .......... 525 CTTAGTAACG ATTAAATTCT TCGTAATGCA TAATTTTTTC AGAGGATAAT TTTATATTAT 89387 .......... .......... .......... .......... .......... .......... 525 TATATATTTT CGAGAAGTCC ACAAAAAACA AATCGCAAGG AAAAAAAATA AAGTAATGAA 89327 .......... .......... .......... .......... .......... .......... 525 AAATCAACTT AATTGATTTG TCTTGATTTT AACATTTGAA AAATAAAATT ATTAAATCAA 89267 .......... .......... .......... .......... .......... .......... 525 TTTTCATTCA ATAAAATATA TTAAGTATCA AAGTTTTTTG ATAGAAAATA AAATAAAATT 89207 .......... .......... .......... .......... .......... .......... 525 TTATGAAGCA CGGAGAAAAA AAGAGAGAAG AAGAAGATAG AAATAGGTGA AAGAGAAAAA 89147 .......... .......... .......... .......... .......... .......... 525 AATGAAGCTT TAAGCATGTC ATACAAGTAT TGTCTGCCGA GTAACATTTC TACCTCTCAC 89087 .......... .......... .......... .......... .......... .......... 525 AAAATAAAAT TTTAGCCGCT ATATATACTT GTGTGAAGCC TTTTATAAGC TGACATGAAG 89027 .......... .......... .......... .......... .......... .......... 525 GAGCTTACGA ACCCCATATG TACAATCTTT TTCAATATCT TCCTCGAACT TGTATAAGGA 88967 .......... .......... .......... .......... .......... .......... 525 GTTAATATCT TAGATGTTCA CTCAACTTCG AATAATTCAC TTAGAAAGTC ACTCAGATTT 88907 .......... .......... .......... .......... .......... .......... 525 GAGTTAACTT CGAAAGTCAC TCAATTTTGT TTTATAACCT AAAAATTACT CAACTAATTT 88847 .......... .......... .......... .......... .......... .......... 525 TACTTAGAAA GTCAGTCAAT TATTTTAAAA TGAAATTTTT TATTAAATTT GGCTGAATAC 88787 .......... .......... .......... .......... .......... .......... 525 AAAAATAAAA TAAAATTATA AGCTGCTTTT AATTATTTTA TTAAATTTTG TTGAAGTATA 88727 .......... .......... .......... .......... .......... .......... 525 ATATTTCTTT ATACCTATCT TTTAAATAAA AAGTAATAAG AAAAAAGGCA CTGTGCTGCC 88667 .......... .......... .......... .......... .......... .......... 525 GTTTTTATAT TATTTCTTTT CAATTCCAAC TTCTTTCTTC TTTTTTGGAA TAACTAACTT 88607 .......... .......... .......... .......... .......... .......... 525 TTTAACATGT TTTCCCTTTT TCTAAAATAA ATATCTTATT ATTTTTTTTA AAAAAATAGT 88547 .......... .......... .......... .......... .......... .......... 525 TTAACATAAA AATAAGATTT TATGAAAAAA AATATTTAAG TTGATCGGAT GTCTTTTTAA 88487 .......... .......... .......... .......... .......... .......... 525 GTGAAACAAA AATAATTGAG TTACTTTTGA ATTATAAAGA GAGTTGAATG ACCTTTTAAA 88427 .......... .......... .......... .......... .......... .......... 525 CGAATAACTC AAATATTAGT GACTTTTGAC TTTAAGATAG AATTGAATGA CTTTCTAACA 88367 .......... .......... .......... .......... .......... .......... 525 AAATAATTCA AAGTTGAATG ACTATCAAAA TGAATTATTT AAAATTAAGT GATTATCTGA 88307 .......... .......... .......... .......... .......... .......... 525 GATGTTAACT GGTAAAATAA GACCCAAACC CAAAATTTGA TTGTCTCTAG GTGTAAGGTC 88247 .......... .......... .......... .......... .......... .......... 525 AAACTTTAAT TATGGAAGGT GTGTTGTAAT AATTATTCCA CCATGGGGCG GCCATGTCTC 88187 .......... .......... .......... .......... .......... .......... 525 TCAATTGGAG TATTTGGTTT TATTTTTCAA TCCAATAACT AACAGTTGCT TTTGATTTTA 88127 .......... .......... .......... .......... .......... .......... 525 AACATTCTTT CGGCGTATAT GGGCATCTCT TTTATGGTGG GGCAATTACT AGATTTTTTT 88067 .......... .......... .......... .......... .......... .......... 525 TAAAAAATAT TTTTTAAATC ATAATACATA AATATATTTT TTAAATTTGA TATTATTTTA 88007 ||| |||| | |||||| | || |||| | .......... .......... .......... ..TAT-TTTT TAAAATTTCA TACCATTTGA 552 TATTTATAGT GTTCAACTAT AATATGAACA AGTAGACACT TAAACTTGTA TAGAGTCGAA 87947 A......... .......... .......... .......... .......... .......... 553 CAAATAAACG TGTACATGCT TCATGGAAAT TGTGTCATAG GTGGTGTTTC ATATATATAT 87887 .......... .......... .......... .......... .......... .......... 553 CATATATTAT TATAAGTGGG AAGATTTTAA GTTCAAAGTT GAATTACGAA AATATCCTTC 87827 .......... .......... .......... .......... .......... .......... 553 ACCAATTTTT TAAATTAAAA AATCTTTTAT TAATTTTTAA AATCTATCTA TATATATTAT 87767 .......... .......... .......... .......... .......... .......... 553 ACTTTATATT ATATAAAGGA GAAGCATGAT GTGGCATGTC TCTAAAGCCA AGAATAACAT 87707 || || .......... .......... .......... .......... .......... ..AAAAAATC 561 TTATTTATTT TTCTCAAAT- TTTTTATATT TATTTTTAAA GTATATATAT ATATATATAT 87648 ||| | || ||| | | ||||| | ||| || | |||| || | |||||| CTATGTTCTT CTCTTTACTA TTTTTGGACA TATCATTCAT GTATCGGTA- CGAGATATAT 620 ATATATATCT TAATTTGAAT CAATGTGTAA CATAATCAAG TCTGTGAATA GAAAAAAAAA 87588 || -CAT...... .......... .......... .......... .......... .......... 623 CGGTTCTATT AATTCGAAGA TTCTACTCTA TGTAATAGGA AGAGACATCC GTTTACTTTC 87528 .......... .......... .......... .......... .......... .......... 623 AAAATTTTTG TAACTCCTAA ATACTAATTA ACAAATAGGC TTCTGTATCT CCTAAATACT 87468 .......... .......... .......... .......... .......... .......... 623 AATTAACAAA TAGGCTTCTG TATCTCCTAG CTCAACTACT GCTTACCCCC ATTAATTAGC 87408 .......... .......... .......... .......... .......... .......... 623 ATTTGAATTA ATTGGTAATT AACAATTAAA AATTAGAAAT ATAAGAAAGA GGGGATGTCA 87348 .......... .......... .......... .......... .......... .......... 623 CTCCCAGATT ATTTCTGGAA AATGAATAAC AAGAAAGACC ATCAAGCTTT GAGGTATGTT 87288 .......... .......... .......... .......... .......... .......... 623 TCCTGACTAG CAAATCTATC TCTTTGTTTT TTCTTTTTTA ACTTATTTTT ATTATAAACC 87228 .......... .......... .......... .......... .......... .......... 623 TTAAATTTTA TGTAGAAGCG AATAATATTT CTATGATATA TATTTAGATT GTTTTGAACG 87168 .......... .......... .......... .......... .......... .......... 623 ATAGTATGAT TTGTAGACGA TTTTCTTACA TCTCACCTTT ATAGAATATC AAATTTGATT 87108 .......... .......... .......... .......... .......... .......... 623 ATACGCGATT TTATTGTAAT CATGAATGGA TAGCTAATTG CACTTTCAAG CGAGCACCTT 87048 .......... .......... .......... .......... .......... .......... 623 ATACTTGATC TATCATAACT AAGAAGGTAT TATATTTCAT GATAACTTTT TGTACTTATA 86988 .......... .......... .......... .......... .......... .......... 623 AAAGCTTTCT AAATAGTTTA AAATATTTCA TTGACTAGCT CAAGATGTCG ATACGCCGCC 86928 .......... .......... .......... .......... .......... .......... 623 AGATTGACCA TTTTGTTATA AGCATGGTAG TCCTCTTTCT ATTATTTTTG TCAAATATTA 86868 .......... .......... .......... .......... .......... .......... 623 CGAATGTTGA GGTTTTATTC AAGAAAAGTA ATGATAAGTT TTGTTTCATT GTTATGTTGT 86808 .......... .......... .......... .......... .......... .......... 623 TTATTATCTT AGGATAGTGT ACAATATGCA TACTTTATGC ACATTGAATA TTACTTATTT 86748 .......... .......... .......... .......... .......... .......... 623 TTCTTTTGAA GTTACTAATC TTAATATTGT CATTCACACA GAGTTGGTGG CCACGAGGAT 86688 | ||||| | | | || .......... .......... .......... .......... .TGGTGGTGT AC-CTTGTAT 641 TTTGCAAAAA AA 86676 | ||||| || TAAACAAAAT AA 653 hqPGS_C08SLe0082C24.1-_SGN-U344226+ (90463 90021,88034 88006) ******************************************************************************** EST sequence 1 -strand 1190 n (File: SGN-U322569-) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TGGATCGGTA TTCGTGTTTG CTCCGACTTT GGAGCTACTG 661 GTTGTGAGAT CTGATTGATT TCTGCCATTG TTGGCGCTGG TTGTTTCATG GTTCCGAGCT 721 CATGGGTTTC AGTCATGACC TGCAAAAATA CAAGAGGAAT CGTGAAAGGG GAAGAGGAAT 781 GGATCTGACA GCGATTTTGG TGTTATATTC AGTGACTATT TCACCGGAAA AGGGAGAAAA 841 ATGAAGAGGG GTTTGGTCTG GTTGTAGTCT GTCTGGCGTG AGGTGGTGGT TTCCAGCGGG 901 TTTTTAGTTG TGGAAGTCGA TTATAGGTTT TTTTTGTAGG ACTCGTGAAG ACTTGGTTTT 961 TCATCGGAAC AGTTGATTTC GGTTCTGGTT CGCTGATCTG GTTGCAACGA TGAAAAGGGG 1021 GACGAGGGTA TTGCTAGAAA CAATGGAAAA GGGGAAGGTG TTCTGGTCAT TTGCTGCTAT 1081 AGCGGTGGAG TTGGAAGCTG GTTTCCCCGG AAAAAAAACT AAGAGGATGC CGGCGGAACT 1141 CTGGTTAACT TGTTACCGAA AAATAAAAGA ATAAAAAATT ACCCCAAAAG Predicted gene structure (within gDNA segment 91322 to 80206): Exon 1 90551 90180 ( 372 n); cDNA 1 367 ( 367 n); score: 0.891 Intron 1 90179 90134 ( 46 n); Pd: 0.000 (s: 0.87), Pa: 0.941 (s: 0) Exon 2 90133 90101 ( 33 n); cDNA 368 397 ( 30 n); score: 0.667 Intron 2 90100 90063 ( 38 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.79) Exon 3 90062 90021 ( 42 n); cDNA 398 437 ( 40 n); score: 0.786 Intron 3 90020 86288 (3733 n); Pd: 0.929 (s: 0.79), Pa: 0.577 (s: 0.61) Exon 4 86287 86244 ( 44 n); cDNA 438 481 ( 44 n); score: 0.614 Intron 4 86243 86198 ( 46 n); Pd: 0.000 (s: 0.61), Pa: 0.000 (s: 0.60) Exon 5 86197 86151 ( 47 n); cDNA 482 527 ( 46 n); score: 0.596 Intron 5 86150 84056 (2095 n); Pd: 0.437 (s: 0.60), Pa: 0.967 (s: 0) Exon 6 84055 84041 ( 15 n); cDNA 528 542 ( 15 n); score: 0.733 Intron 6 84040 83431 ( 610 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 7 83430 83421 ( 10 n); cDNA 543 552 ( 10 n); score: 0.900 Intron 7 83420 82037 (1384 n); Pd: 0.268 (s: 0), Pa: 0.815 (s: 0) Exon 8 82036 82008 ( 29 n); cDNA 553 582 ( 30 n); score: 0.603 MATCH C08SLe0082C24.1- SGN-U322569- 0.891 592 0.497 C PGS_C08SLe0082C24.1-_SGN-U322569- (90551 90180,90133 90101,90062 90021,86287 86244,86197 86151,84055 84041,83430 83421,82036 82008) Alignment (genomic DNA sequence = upper lines): TTTGACTTTT TTTTGTTTCA ATGACTAATT TATAATTATT ATTTTGATAG TCAAATTTAT 90492 ||| |||| ||||| || | |||||||||| |||||||||| ||||||||| |||||||||| TTTTCTTTTT TTTTGGTT-A ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 59 TTATTTTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACTAAATTTT TTCTTCGAAT 90432 |||| ||||| |||||||||| |||||||||| |||||||||| || ||| ||| ||||| |||| TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAC ACAC-AAAAA AATAGTTTAA TTTTTCACTC TCTTTAAACT 90373 || ||||||| |||||||||| |||| ||||| ||||||||| ||||| || |||||||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTT-TTTC TCTTTAAACT 178 AAGGAATGAA AGAAAAAAAA CAAAATAAGA ATAAGAAACT CAAATAATTA TAATAAAAGA 90313 |||||||||| || |||| ||||| ||| |||| ||||| |||||||||| |||||||||| AAGGAATGAA AG----AAAA -AAAATTAGA ATAACAAACT CAAATAATTA TAATAAAAGA 233 AGTCAAAAAA TAGTTTATGT ATGAAAAAAA TTAAA-ATAT ACCTTGAACT TTGATAGAAG 90254 ||||||| || || ||||||| || ||||||| ||||| ||| |||| ||||| |||||||||| AGTCAAACAA TAATTTATGT ATAAAAAAAA TTAAATATA- ACCTCGAACT TTGATAGAAG 292 AATCATATAT ACCTCTAAAT AATTTTTTTA AAAAAAATTA GAAGT-ATAA ATATAAATTT 90195 ||| |||||| |||| ||||| |||||||||| |||| ||| | |||| |||| |||||||||| AATAATATAT ACCTTTAAAT AATTTTTTTA AAAACAATCA AAAGTAATAA ATATAAATTT 352 AAAACTAATT TTTTAATTTC CGTCAAATTA AGGGTATATG TGAGTCATTT TATAACGACA 90135 |||| ||||| ||||| AAAATTAATT TTTTA..... .......... .......... .......... .......... 367 GGGGTATATA TGAGCCGTTT GTATAACGGT AAGGGCATAT ATGAGCCACT TTTATAACGA 90075 |||||| | |||| ||| | ||||| | | .--ATATATA TTAGCCATTT -TGTAACGAC AGTG...... .......... .......... 397 GGGATATATT AGCTCCAAAT GACAAAGTTA AGGGGTATAT CAGACTCTTT TCCCGTAAAC 90015 || ||||| |||||| || || ||||| || ||| ||| | || .......... ..CTGCAAAT GACAAAATTG AGAAATATAT CAAACT-TTT T-CC...... 437 TTTTGTTTCT CATTCTCTTG TTCTCCTTTG TAGTCTTTTG TGTTTTTTTA AAAAAAATTA 89955 .......... .......... .......... .......... .......... .......... 437 GCCACAATGT TTAACTATTT TATTTTTATA TTATTTATTT AAGGAAAACT TAAAGTAAAT 89895 .......... .......... .......... .......... .......... .......... 437 GAAACGAGAA AAAATAGTTT TTTAGTGAGA TTAAAGAAAT TTAATATAGT GTAATTAAAT 89835 .......... .......... .......... .......... .......... .......... 437 AATTTTTGTG TTTGCTTATA AAAAGATCAT ACATTAATTT TTTAGGAGAA TTTTTTATTT 89775 .......... .......... .......... .......... .......... .......... 437 TATTATTTTA TTAATAAATG ATCTGTAATA ATTTTGATTA TACGTATAAC CTTCTCTGAA 89715 .......... .......... .......... .......... .......... .......... 437 GCTAAAAAAA TTATTATAAA TATTTTTTTT GTTCTCTTTG TGAGTACTCG TGTTTCTCTT 89655 .......... .......... .......... .......... .......... .......... 437 TATAATAATT ATTCTTTTTA CTTTGTAATT TAATTTATAT TTTTATTTAG ATAAAATTGA 89595 .......... .......... .......... .......... .......... .......... 437 AAGTGTTTTT TCATGTTCAA AATAACTCAT AATTTAATTG ATTATTTTAT TTAAATAAAA 89535 .......... .......... .......... .......... .......... .......... 437 TATTAACAAG ACATCTTTAA TATATCAGCC TTAAATCTTT AATTTTTGTA AGAATATAGT 89475 .......... .......... .......... .......... .......... .......... 437 AAAATCATTG GGAATTTTTA TCAAATTTCT TAGTAACGAT TAAATTCTTC GTAATGCATA 89415 .......... .......... .......... .......... .......... .......... 437 ATTTTTTCAG AGGATAATTT TATATTATTA TATATTTTCG AGAAGTCCAC AAAAAACAAA 89355 .......... .......... .......... .......... .......... .......... 437 TCGCAAGGAA AAAAAATAAA GTAATGAAAA ATCAACTTAA TTGATTTGTC TTGATTTTAA 89295 .......... .......... .......... .......... .......... .......... 437 CATTTGAAAA ATAAAATTAT TAAATCAATT TTCATTCAAT AAAATATATT AAGTATCAAA 89235 .......... .......... .......... .......... .......... .......... 437 GTTTTTTGAT AGAAAATAAA ATAAAATTTT ATGAAGCACG GAGAAAAAAA GAGAGAAGAA 89175 .......... .......... .......... .......... .......... .......... 437 GAAGATAGAA ATAGGTGAAA GAGAAAAAAA TGAAGCTTTA AGCATGTCAT ACAAGTATTG 89115 .......... .......... .......... .......... .......... .......... 437 TCTGCCGAGT AACATTTCTA CCTCTCACAA AATAAAATTT TAGCCGCTAT ATATACTTGT 89055 .......... .......... .......... .......... .......... .......... 437 GTGAAGCCTT TTATAAGCTG ACATGAAGGA GCTTACGAAC CCCATATGTA CAATCTTTTT 88995 .......... .......... .......... .......... .......... .......... 437 CAATATCTTC CTCGAACTTG TATAAGGAGT TAATATCTTA GATGTTCACT CAACTTCGAA 88935 .......... .......... .......... .......... .......... .......... 437 TAATTCACTT AGAAAGTCAC TCAGATTTGA GTTAACTTCG AAAGTCACTC AATTTTGTTT 88875 .......... .......... .......... .......... .......... .......... 437 TATAACCTAA AAATTACTCA ACTAATTTTA CTTAGAAAGT CAGTCAATTA TTTTAAAATG 88815 .......... .......... .......... .......... .......... .......... 437 AAATTTTTTA TTAAATTTGG CTGAATACAA AAATAAAATA AAATTATAAG CTGCTTTTAA 88755 .......... .......... .......... .......... .......... .......... 437 TTATTTTATT AAATTTTGTT GAAGTATAAT ATTTCTTTAT ACCTATCTTT TAAATAAAAA 88695 .......... .......... .......... .......... .......... .......... 437 GTAATAAGAA AAAAGGCACT GTGCTGCCGT TTTTATATTA TTTCTTTTCA ATTCCAACTT 88635 .......... .......... .......... .......... .......... .......... 437 CTTTCTTCTT TTTTGGAATA ACTAACTTTT TAACATGTTT TCCCTTTTTC TAAAATAAAT 88575 .......... .......... .......... .......... .......... .......... 437 ATCTTATTAT TTTTTTTAAA AAAATAGTTT AACATAAAAA TAAGATTTTA TGAAAAAAAA 88515 .......... .......... .......... .......... .......... .......... 437 TATTTAAGTT GATCGGATGT CTTTTTAAGT GAAACAAAAA TAATTGAGTT ACTTTTGAAT 88455 .......... .......... .......... .......... .......... .......... 437 TATAAAGAGA GTTGAATGAC CTTTTAAACG AATAACTCAA ATATTAGTGA CTTTTGACTT 88395 .......... .......... .......... .......... .......... .......... 437 TAAGATAGAA TTGAATGACT TTCTAACAAA ATAATTCAAA GTTGAATGAC TATCAAAATG 88335 .......... .......... .......... .......... .......... .......... 437 AATTATTTAA AATTAAGTGA TTATCTGAGA TGTTAACTGG TAAAATAAGA CCCAAACCCA 88275 .......... .......... .......... .......... .......... .......... 437 AAATTTGATT GTCTCTAGGT GTAAGGTCAA ACTTTAATTA TGGAAGGTGT GTTGTAATAA 88215 .......... .......... .......... .......... .......... .......... 437 TTATTCCACC ATGGGGCGGC CATGTCTCTC AATTGGAGTA TTTGGTTTTA TTTTTCAATC 88155 .......... .......... .......... .......... .......... .......... 437 CAATAACTAA CAGTTGCTTT TGATTTTAAA CATTCTTTCG GCGTATATGG GCATCTCTTT 88095 .......... .......... .......... .......... .......... .......... 437 TATGGTGGGG CAATTACTAG ATTTTTTTTA AAAAATATTT TTTAAATCAT AATACATAAA 88035 .......... .......... .......... .......... .......... .......... 437 TATATTTTTT AAATTTGATA TTATTTTATA TTTATAGTGT TCAACTATAA TATGAACAAG 87975 .......... .......... .......... .......... .......... .......... 437 TAGACACTTA AACTTGTATA GAGTCGAACA AATAAACGTG TACATGCTTC ATGGAAATTG 87915 .......... .......... .......... .......... .......... .......... 437 TGTCATAGGT GGTGTTTCAT ATATATATCA TATATTATTA TAAGTGGGAA GATTTTAAGT 87855 .......... .......... .......... .......... .......... .......... 437 TCAAAGTTGA ATTACGAAAA TATCCTTCAC CAATTTTTTA AATTAAAAAA TCTTTTATTA 87795 .......... .......... .......... .......... .......... .......... 437 ATTTTTAAAA TCTATCTATA TATATTATAC TTTATATTAT ATAAAGGAGA AGCATGATGT 87735 .......... .......... .......... .......... .......... .......... 437 GGCATGTCTC TAAAGCCAAG AATAACATTT ATTTATTTTT CTCAAATTTT TTATATTTAT 87675 .......... .......... .......... .......... .......... .......... 437 TTTTAAAGTA TATATATATA TATATATATA TATATCTTAA TTTGAATCAA TGTGTAACAT 87615 .......... .......... .......... .......... .......... .......... 437 AATCAAGTCT GTGAATAGAA AAAAAAACGG TTCTATTAAT TCGAAGATTC TACTCTATGT 87555 .......... .......... .......... .......... .......... .......... 437 AATAGGAAGA GACATCCGTT TACTTTCAAA ATTTTTGTAA CTCCTAAATA CTAATTAACA 87495 .......... .......... .......... .......... .......... .......... 437 AATAGGCTTC TGTATCTCCT AAATACTAAT TAACAAATAG GCTTCTGTAT CTCCTAGCTC 87435 .......... .......... .......... .......... .......... .......... 437 AACTACTGCT TACCCCCATT AATTAGCATT TGAATTAATT GGTAATTAAC AATTAAAAAT 87375 .......... .......... .......... .......... .......... .......... 437 TAGAAATATA AGAAAGAGGG GATGTCACTC CCAGATTATT TCTGGAAAAT GAATAACAAG 87315 .......... .......... .......... .......... .......... .......... 437 AAAGACCATC AAGCTTTGAG GTATGTTTCC TGACTAGCAA ATCTATCTCT TTGTTTTTTC 87255 .......... .......... .......... .......... .......... .......... 437 TTTTTTAACT TATTTTTATT ATAAACCTTA AATTTTATGT AGAAGCGAAT AATATTTCTA 87195 .......... .......... .......... .......... .......... .......... 437 TGATATATAT TTAGATTGTT TTGAACGATA GTATGATTTG TAGACGATTT TCTTACATCT 87135 .......... .......... .......... .......... .......... .......... 437 CACCTTTATA GAATATCAAA TTTGATTATA CGCGATTTTA TTGTAATCAT GAATGGATAG 87075 .......... .......... .......... .......... .......... .......... 437 CTAATTGCAC TTTCAAGCGA GCACCTTATA CTTGATCTAT CATAACTAAG AAGGTATTAT 87015 .......... .......... .......... .......... .......... .......... 437 ATTTCATGAT AACTTTTTGT ACTTATAAAA GCTTTCTAAA TAGTTTAAAA TATTTCATTG 86955 .......... .......... .......... .......... .......... .......... 437 ACTAGCTCAA GATGTCGATA CGCCGCCAGA TTGACCATTT TGTTATAAGC ATGGTAGTCC 86895 .......... .......... .......... .......... .......... .......... 437 TCTTTCTATT ATTTTTGTCA AATATTACGA ATGTTGAGGT TTTATTCAAG AAAAGTAATG 86835 .......... .......... .......... .......... .......... .......... 437 ATAAGTTTTG TTTCATTGTT ATGTTGTTTA TTATCTTAGG ATAGTGTACA ATATGCATAC 86775 .......... .......... .......... .......... .......... .......... 437 TTTATGCACA TTGAATATTA CTTATTTTTC TTTTGAAGTT ACTAATCTTA ATATTGTCAT 86715 .......... .......... .......... .......... .......... .......... 437 TCACACAGAG TTGGTGGCCA CGAGGATTTT GCAAAAAAAG TGTTGTCCTC AACACTTTTA 86655 .......... .......... .......... .......... .......... .......... 437 CTACAATGAT TTAAGATTCC ATTACAATAT AATATTATTG TATACTTTCC TTAAAGTTCT 86595 .......... .......... .......... .......... .......... .......... 437 TTTAAAACAA ATTAATTTGA TTGTAATATT CTTCAAGTAA TAGTTCTCAT GTAATATTTT 86535 .......... .......... .......... .......... .......... .......... 437 TTTATTGGTC ACTATTTTTC CTGTTGTTTT ATGTCATTTG TTCCTTTTTT TAATTTTAAT 86475 .......... .......... .......... .......... .......... .......... 437 AATTGTTGGA GAGTTTATGT TCCAAGAAAC TTCAGCCTTG GGGCATTGGG GGTTATAATT 86415 .......... .......... .......... .......... .......... .......... 437 TTTGAGTGAT AATTCTAATT AGTAAAAATA TTGTTCTAGC CTTATAAGTT GTTCATTATA 86355 .......... .......... .......... .......... .......... .......... 437 CCCCCCTCCG AAATTTTTTT GTTGATATTT AAGTTTTAGG CAGAAAATAA ACTCTTTTAC 86295 .......... .......... .......... .......... .......... .......... 437 TGATTAGGCA GAAGGTAAAC ACTAAAAAGA GTTTATTTTA TATGCACAAA AATACAGACA 86235 | | || | | ||| |||||| | ||||| | ||| | | .......GTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA A......... 481 GGAATACTTC AGACAATGTT GAATAATTTT TATCAACAAG AGTTGATCCT ATATAAAATT 86175 || | ||| ||| ||| || .......... .......... .......... .......AAT CTTCAATCAA ATACAAAGTT 504 TTAACAGTAA CAGAGGTAAA ACATGCAAGG CACGTTTCCA GGACTCGTAT TACTATAAGT 86115 |||| || ||| | | | || CAAACACTAG CAG-TGAACC AAAT...... .......... .......... .......... 527 GGGAAATTCT AAAGTGAAAA GTTGAATTAT CATTTTGGCC TTGTACTAAA TTGAAATTTG 86055 .......... .......... .......... .......... .......... .......... 527 ATTAATTAGT TAATTTAAAT ATCACATTGT CTCATTTTAA TAAAAATATT AATAACTTTT 85995 .......... .......... .......... .......... .......... .......... 527 GTACTTCCTT AGATTAATTT CTAATTAAAA TATCTAATTT AAATAATATT TATCATCTAT 85935 .......... .......... .......... .......... .......... .......... 527 TATCTATATG TATATTTAAT TTAATCTCCA TCATATCATA TAATCAGCAT AATAATAATA 85875 .......... .......... .......... .......... .......... .......... 527 ATAATAATAA TGATAATAAT AATAATAATA GTAATAATAA TAATAATAAT AATAATAATA 85815 .......... .......... .......... .......... .......... .......... 527 ATAATATACT AACAGTGAAA GCAATATTAG GCAAAAATTA GATTACATTT TGTCCCTATA 85755 .......... .......... .......... .......... .......... .......... 527 TCATATATAA ATATTAATCG TCTAATAAAT TGTTAACTGA ATATTAAATA GTAAATTTTA 85695 .......... .......... .......... .......... .......... .......... 527 ATTACTATAA GGGAGGATTA CACATTAAGC AATATCAAAT TTATCAAATT CTTTCGGTTA 85635 .......... .......... .......... .......... .......... .......... 527 CAATTTATTT ATGTTGATGG TTAATTAATA TTAAATTGTT AGAAACAATT ATTATCAAGA 85575 .......... .......... .......... .......... .......... .......... 527 AGACAAAAAG ACCCCCAACG ATATTGTTCA ATGAATTAAA GGTGAAGACT AAAGGTTACA 85515 .......... .......... .......... .......... .......... .......... 527 AAATTAATTA GGAAACTGAT ATGTATCTTT TATTTTTTTC CTTTCATCTC CCCTCACCTA 85455 .......... .......... .......... .......... .......... .......... 527 AAATTTTCCT ATTTAAAGTC ACCTAGAAAT GAAAATTACT TTACAAATCT CATCTGATCT 85395 .......... .......... .......... .......... .......... .......... 527 TCTTACTAAA GTATGTTAAT ATGTCAATTC TCTCTTATAA ATTATGATCC ATTTTCTCTT 85335 .......... .......... .......... .......... .......... .......... 527 TTTTGGTATA TCATTTCTTT CTTCTTTTTT AATTTCCTTT CTGATCATAG TCATAGACTG 85275 .......... .......... .......... .......... .......... .......... 527 CTGAAGAAAA GTTGTCATCA ATCTTTATAG AATTGTTAAG GACAATAACA TTATTGTTGT 85215 .......... .......... .......... .......... .......... .......... 527 ATTCGGATCG AAGACATTAT GATTAATTGA TTGATTAATT GTAAAGAATG TTTAAAAGAA 85155 .......... .......... .......... .......... .......... .......... 527 AATAATTTTT TTTATCACGT TATATGAATT ATCACAAAAT AATGAATGTT TGTACTATTT 85095 .......... .......... .......... .......... .......... .......... 527 TATGTAAAAT GATTATAGCT ATTACCATTT GAAGTTATTT TCATATTAGT TTTAAATGTT 85035 .......... .......... .......... .......... .......... .......... 527 CTTTTATAAT GTTTCTCTTC TTATTCATTT TAAGTTAAAT ATGTTCTCTA TTTATATAAA 84975 .......... .......... .......... .......... .......... .......... 527 GAAGTTTATG TTTAAATAAT TAAATAGATG TTACTTATTT AGACTTTATA TAATTATTGG 84915 .......... .......... .......... .......... .......... .......... 527 CGTAAAATAT GTACAATACT ATATTTCTTA TTTCCAAATC AAATTTAAAA TTGTCTCAAT 84855 .......... .......... .......... .......... .......... .......... 527 GATATATTAG ATATTTTATT ATATGTTTGA AATATTTGAC AGATATGTTG ACTGACTATG 84795 .......... .......... .......... .......... .......... .......... 527 CATGCATTTA TAATTATTTC ATTATCTCAT AAATTAGTAT CTGTTTCATG TACTTCTTAT 84735 .......... .......... .......... .......... .......... .......... 527 CCCCCTCTTT TCTTACTTTT AAATACTCAT TTGCAATTCA ATATATGTAT CGATTTGAAA 84675 .......... .......... .......... .......... .......... .......... 527 GATTACTAAC ATTAGCTTAT GAATTACATG TATATTTACT TTTTTATGTA TATTTTATTT 84615 .......... .......... .......... .......... .......... .......... 527 TTTAAGTTAT GACATATAGC AAATCCAACA ATATATGTAC CATTTACAAA TTAATTTTAG 84555 .......... .......... .......... .......... .......... .......... 527 TACAAAATTT ATATTAAGTA GTTTAAAATA AACGTGCAAC GCACGTTTTG AAGACTAGTG 84495 .......... .......... .......... .......... .......... .......... 527 TATATATATA TATATATATA TATATATATT ATGCTACATA TGACTTAACT ATGTACTTGT 84435 .......... .......... .......... .......... .......... .......... 527 TCAATTATAT ACAAGTTAAA ATATCAAATT ATGTGTATAT TCAAATTTGA AGGATATAAA 84375 .......... .......... .......... .......... .......... .......... 527 TATAAAATAA AATAAAATTA AAAGACATAT TTATCTATTA TCTTGTTTAT TGTTTATTGC 84315 .......... .......... .......... .......... .......... .......... 527 CTGCTCCATT TTGCTTTTCA GGAACTAGTG GTTGTCATTT TAGTATTTGT ATGCCTTTAT 84255 .......... .......... .......... .......... .......... .......... 527 TTCAATGATT TTTTTTTGCT CATATGTTAG TTTGTAGGTT TGATATTGTT AGTTGCCTGG 84195 .......... .......... .......... .......... .......... .......... 527 AAGAGTTGAA TTTTGTTTTT TTTAGCATCT TTTCTAAGTA AGAAGATTGA ACTGTAGTAA 84135 .......... .......... .......... .......... .......... .......... 527 GCTGATATCC AGAGCTTTAA ACTTTCAAAT TATATTTTGT TATGACTTGA ATCTTGAATA 84075 .......... .......... .......... .......... .......... .......... 527 TAAATGTGTG TCTATGCAGC ATGGCAGGGT TATAGTATTT TAAAACATGC ATTGTGGCTT 84015 | || | | || |||| .......... .........C ATCGAAAAGT TATA...... .......... .......... 542 TATTTGCTTT CATTTATCTT GGCTGCCCTT TCTTCTATTT GATTTACATT GCCTTAGTTA 83955 .......... .......... .......... .......... .......... .......... 542 TGCGTATAAA TGCAGAATTG TTTTTATCGT TGACTGTTTT TCTTTATGTT TCCTTTTGAT 83895 .......... .......... .......... .......... .......... .......... 542 CCGTTTCACG TGCATTCGCC ATGACTCCTA ACGGATTTCG CCCGTATCCC TGCACTTCCT 83835 .......... .......... .......... .......... .......... .......... 542 CGCTGAGCCG TAAGGGCTCA AACCTCCTCC TCAAGTCTTA GACCCTCACA ACTGGCGTAC 83775 .......... .......... .......... .......... .......... .......... 542 AGGTTGAACA CAAAAAAACG AGCTGCTGGA AATTAATTTA CAGGTCGGAA GAATCAGCAA 83715 .......... .......... .......... .......... .......... .......... 542 GTGTGTTGCT GGAAAATCAA ATCTACAGAT TTGAGCAGCA GTATACATAT TGTATACATT 83655 .......... .......... .......... .......... .......... .......... 542 TGTTATACAC TGATATACAG GTTGAAAGGC GTATACGAAC AAATGCAGGG CTCAAAAGTC 83595 .......... .......... .......... .......... .......... .......... 542 CAATACGAAT TGGTTACAAA TAGTTGATTT GTTTCCAAAA GAAAAATCAG AAAATTACAT 83535 .......... .......... .......... .......... .......... .......... 542 CTCATTAGTA ATAAGCAGAT GAGGAATGTG AGCAATTTTG TACCAGTCTT GTCCTATTCC 83475 .......... .......... .......... .......... .......... .......... 542 CTTCTCACAC CGCTTGGCCA GTGTTGGACA TTCCCTAACT GATAAATTTG TTAGGTGCTG 83415 || ||| |||| .......... .......... .......... .......... ....AAATTG TTAG...... 552 CAATCCCTCC GGTAAACATT TTAGCCTCTT ACAATTTGTT ATGGATAATT CTGTGAGTGA 83355 .......... .......... .......... .......... .......... .......... 552 AGTTAAACCT TTCACCCCTT CCTCGGGGAG ACTCTCGAGT GCGTCACAAT ATTCAATTTT 83295 .......... .......... .......... .......... .......... .......... 552 CAGATGCTTC AAAGCATTGA GACTAGCCAG GCTGTTTGGC AGCTCTTTGA GATTGAAGAT 83235 .......... .......... .......... .......... .......... .......... 552 GAAAGAGATT TCCAAGTATT TGAGATTTGC AAGGCTTTTG AACATCTCTT CTGGGAGCGA 83175 .......... .......... .......... .......... .......... .......... 552 AGTAGCTGTC AAGTTATGGC TAATGTTGAG GGAAGTAAGA GCCCTAAGAT TATATATGGA 83115 .......... .......... .......... .......... .......... .......... 552 CCTCAAACCT ATTGCATCTG ACATGTTCCG ATTAACTACC AATTTCTTGA CAGAAGAAAG 83055 .......... .......... .......... .......... .......... .......... 552 GGTCGGAATA ACAAGCACAG GACACCAGCT AATTGTCATC TCTTCAAGCA CGGGGAATTG 82995 .......... .......... .......... .......... .......... .......... 552 CTCTTCTCCT GCCTCTTTCA GCAATCCTTT CAGATTATCG AAATTGACTA TAATAAGTTT 82935 .......... .......... .......... .......... .......... .......... 552 TCTCAGAGAT GGAAACCTTC TTCTTGTAGG GAATCCAGAA TCTTCAACAT ACTCCAGTTC 82875 .......... .......... .......... .......... .......... .......... 552 CGCAGACCCA TCTCCTAACT CTAGACTTTC AAGACAAGGC AGATCACCAA ACGGTGGTAA 82815 .......... .......... .......... .......... .......... .......... 552 GCATGAGCAG TTTTCACAAC CTCTAATTGC AATAGAGACA ACATTTTTCA AAACTGAGTG 82755 .......... .......... .......... .......... .......... .......... 552 ATTCATCCAC TTTGGAAGAC GGAATCCTCT GAAGCCAGTG ATTGTTAAAC CAGTCACATT 82695 .......... .......... .......... .......... .......... .......... 552 GGAGTGTGGT TTGAGGGCTT CAAGCACTTC AACTTCTTCT GATTCATATC TATGCCGTCC 82635 .......... .......... .......... .......... .......... .......... 552 TTTCCAAGTC ATGCTTAAAG AATGCAGATT TTCTTTTGCA GATAAATTGG CTTCTTTTGC 82575 .......... .......... .......... .......... .......... .......... 552 ATCCCTATCA TTCTTCACTC TCTCAAGATG CGTGATTTCA ATTGACCCAT ACAAATTCAG 82515 .......... .......... .......... .......... .......... .......... 552 GTTTCGTAAT TCACCAAGTA GAGAATCTTT TCTCTCGCCA ATAACAAAGA AACTTAGAGT 82455 .......... .......... .......... .......... .......... .......... 552 CTTAAGGCAT GTCAAAGATC CTATCCTTGG TGGCATAGAA TCCAATCCAT CGCAACCATC 82395 .......... .......... .......... .......... .......... .......... 552 AAGTAAGAGA TTTCGGAGAC TACCAAGTTT ACTTGTTTCT TTTGGCAAAC AACAAAGTGA 82335 .......... .......... .......... .......... .......... .......... 552 CCAGCAATAC TCTACATTAA GAGTCTGCAG ATTTTGAAGC TTGCATAACT GCTTTGGAAG 82275 .......... .......... .......... .......... .......... .......... 552 AGTACGCATG TTATTGAGAG AGGTTCAAGT ATCTTAAATG TACTAGATCT CCAATGGAGG 82215 .......... .......... .......... .......... .......... .......... 552 ACGGTAACTG CTTAAGTCCC ATGGAACTTA GATTAAGAAC CCTCAATGAG ACAAACTTTT 82155 .......... .......... .......... .......... .......... .......... 552 GCAAGTGAGG AGGAGAGTAA GAAGACACCA CTTTTGCGAA ACCAATCGAC ATCATATGTA 82095 .......... .......... .......... .......... .......... .......... 552 GGTAACCTTC TACATTTATT TCTCGGATAT TGCTGCTTGA TGTGCTTGCT GAAAATAGAG 82035 | .......... .......... .......... .......... .......... ........AA 554 ATGT-TGCCA AATCATGAAT GAGATCAT 82008 || | | ||| || || || || | ||| ATTTCTACCA TATATTGGAT GAAAACAT 582 hqPGS_C08SLe0082C24.1-_SGN-U322569- (90551 90180,90133 90101,90062 90021) ******************************************************************************** EST sequence 15 +strand 1112 n (File: SGN-U338250+) 1 NAAAAACTGA CTCCGCGGGG CGGCCGCTCA GAACTAGTGG ATCCCCCGGG CTGCAGGAAT 61 TCGGCACGAG CAATAAAAGA AAAAACATGG CCGACGAACT TCAGCCAGTC AACCAGAGGT 121 ACGGAGAATT GTTGGTATAT GTCGTTATCA TGGAATATAT GGAAGTCTAT ACACTGATCA 181 GCTGAGCAAA CCGGAAAATT TGAATTGGTC AATATTTCAT CAATACATGG CGGAAGCTTT 241 TCTTCAAGTT GTGCTAGAAA ATCTCACTTC TTTCATCGGA GGAAAACTTG TATTGATTTT 301 CGGTTTCGAA AAGGAATTTG AAAAGCTGTC GAGTGTGTTT TCCACAATTC AAGCTGTGCT 361 ACAAGATGCT CAGGAGAAGC AATTGAAGGA CAAGTCAATT GAGAATTGGT TGCAGAAACT 421 CAATTCTGCT GCATATGAAG TTGATGATAT ATTGGGCGAA TGTAAAAATG AGGCAACAAG 481 ATTCGAGCAA TCTCGATTAG GGTTTTTTCA TCCAGGAATT ATCAATTTCC GTCACAAAAT 541 TGGGAAAAGG ATGAAAGAGA TAATGGAGAA ACTAGATGCA ATTGCTGAGG ATAGAAGGAA 601 GTTTCATTTC CTTGAAAAAA TTACAGAGAG ACAAGCCGCC GCTGCTACGC GTGAAACAGG 661 TGTGAGAACT AAGTAATATA GCTTTAGTTT ATATTCAATT TGTTATCACA TTGTGTGTTC 721 ACCGTCGTCT CTACAGTAGT ATGGCAATGG GGCGGGGTGG AGTTGGAGGT CTGAAGGTGT 781 GGAGCGCAAC TTCAACTTTG AATCTGCATA AGTAGGTTTT AAATTTGTAT AGAATTGAAC 841 AAGTACACAC GCGTCCTACT TGGTGTCTAC TTGTTCAACT TTACAAGAGT TTTAAGTATG 901 TACTTGTGCA CAGTTAAGAA GGAATAGATG TCCGTTGATG TCAAAAAAAA AAAAAAAATT 961 CGAGGGGGGG CCGGGACCCA TTTCCCCTAA GGGGGGCCGA TAAAAANNNN NNNNNNNNNN 1021 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1081 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NG Predicted gene structure (within gDNA segment 86632 to 97305): Exon 1 91081 91497 ( 417 n); cDNA 223 639 ( 417 n); score: 0.789 MATCH C08SLe0082C24.1+ SGN-U338250+ 0.789 417 0.375 C PGS_C08SLe0082C24.1+_SGN-U338250+ (91081 91497) Alignment (genomic DNA sequence = upper lines): ATACATGGCT GAAGCTTTCC TTCAAATTTT GTTGAAAAAT TTGACTTCTT TCATACAAGA 91140 ||||||||| |||||||| | ||||| || | | | ||||| | ||||||| |||| || ATACATGGCG GAAGCTTTTC TTCAAGTTGT GCTAGAAAAT CTCACTTCTT TCATCGGAGG 282 GGAACTTGGA TTGTTTTTTG GTTTTAAGAA CGAGTTTGAA AATCTTAAAA GCACGTTTAC 91200 |||||| | ||| |||| | |||| | || || |||||| || || | | |||| | AAAACTTGTA TTGATTTTCG GTTTCGAAAA GGAATTTGAA AAGCTGTCGA GTGTGTTTTC 342 TACGATCCAA GCTGTGCTTG AAGATGCTCA GGAGAAGCAA CTGAAGGACA AGCCACTAGA 91260 || || ||| |||||||| |||||||||| |||||||||| ||||||||| || || | || CACAATTCAA GCTGTGCTAC AAGATGCTCA GGAGAAGCAA TTGAAGGACA AGTCAATTGA 402 AAATTGGTTG CAGAAACTCA ATATTGCTGC ATATGAAGTT GATGACATCT TGGATGAATG 91320 ||||||||| |||||||||| || |||||| |||||||||| ||||| || | ||| ||||| GAATTGGTTG CAGAAACTCA ATTCTGCTGC ATATGAAGTT GATGATATAT TGGGCGAATG 462 TCAAACTGAG GCAGCAAGAC TCAATCAGAC TAAATATGGG AGTTATCATC CAAAGGCTAT 91380 | ||| |||| ||| ||||| || | || | | || ||| || ||||| || ||| TAAAAATGAG GCAACAAGAT TCGAGCAATC TCGATTAGGG TTTTTTCATC CAGGAATTAT 522 CGCTTTCCGT TACAAGATTG GGAAAAGGAT GAAAGAGATA ATGGAGAGAC TAGATGCAAT 91440 | ||||||| |||| |||| |||||||||| |||||||||| ||||||| || |||||||||| CAATTTCCGT CACAAAATTG GGAAAAGGAT GAAAGAGATA ATGGAGAAAC TAGATGCAAT 582 TGCTGCAGAA CGAAGCAAGT TTCATTTGGA AAAAAGGACT ACAGAGAGAG AAGCTGC 91497 ||||| || |||| |||| ||||||| ||| | | ||||||||| |||| || TGCTGAGGAT AGAAGGAAGT TTCATTTCCT TGAAAAAATT ACAGAGAGAC AAGCCGC 639 hqPGS_C08SLe0082C24.1+_SGN-U338250+ (91081 91497) ******************************************************************************** EST sequence 23 +strand 734 n (File: SGN-U331884+) 1 GTTTGTGTCG TTGAGGGTGC TTAATCTAAG TAATTTAAGT CTTAAGCGTT TACCGTCTTC 61 CATTGGAGAT CTAGTACATT TAAGATACTT GAACCTCTCT CTCAATAACA TGCGTAGTCT 121 TCCAGAGCAG TTATGCAAGC TTCAAAATCT GCAGACTCTT AATCTACAGA ATTGCTGGTC 181 ACTTTGTTGT TTGCCAAATC AAACAAGTCA ACTTAGCAGT CTCAGAAATC TTTTACTTGA 241 TGTTTGCTTT GAATTGGATT CTATGCCACC AAGGATAGGA TCTTTGACAT GCCTTAAGAC 301 TCTAAGTAGA TTTGCAGTGG GGAGGAGGAA AAGTTGTCCA CTTGGTGAAT TACGAAACCT 361 GAATCTGTAT GGGTCAATTG AAATCACGCA TCTTGAGAGA GTGAAGAATG ATAGGGATGC 421 AAAAGAAGCC AATTTATCTG CAGAAGAAAA TCTGCATTCT TTAAGCATGG AATGGAAAGG 481 ACCACATAGA TATGAATCAG AAGAAGTTGA AGTGCTTGAA GCCCTCAAAC CACACTCCAA 541 TATGACTTGT TCAACAATCA CTGGCTTCAG AGGAATCCGT CTCCCAGAGT GGATGAATCA 601 CTCAGTTTTG AAAAATGTTG TCTCTATTGC AATTAAAGGT TGTGAAAACT GCTCATGCTT 661 ACCACCGTTT GGTGATCTGC CTTGTCTAGA AAGTCTAGAG TTATGGAGTG GGTCTGCGGA 721 GGTGGAGTAT GTTG Predicted gene structure (within gDNA segment 92427 to 94370): Exon 1 93027 93760 ( 734 n); cDNA 1 734 ( 734 n); score: 0.997 MATCH C08SLe0082C24.1+ SGN-U331884+ 0.997 734 1.000 C PGS_C08SLe0082C24.1+_SGN-U331884+ (93027 93760) Alignment (genomic DNA sequence = upper lines): GTTTGTGTCG TTGAGGGTGC TTAATCTAAG TAATTTAAGT CTTAAGCGTT TACCGTCTTC 93086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTGTCG TTGAGGGTGC TTAATCTAAG TAATTTAAGT CTTAAGCGTT TACCGTCTTC 60 CATTGGAGAT CTAGTACATT TAAGATACTT GAACCTCTCT CTCAATAACA TGCGTAGTCT 93146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGGAGAT CTAGTACATT TAAGATACTT GAACCTCTCT CTCAATAACA TGCGTAGTCT 120 TCCAGAGCAG TTATGCAAGC TTCAAAATCT GCAGACTCTT AATCTACAGA ATTGCTGGTC 93206 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGAGCAG TTATGCAAGC TTCAAAATCT GCAGACTCTT AATCTACAGA ATTGCTGGTC 180 ACTTTGTTGT TTGCCAAATC AAACAAGTCA ACTTAGCAGT CTCAGAAATC TTTTACTTGA 93266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGTTGT TTGCCAAATC AAACAAGTCA ACTTAGCAGT CTCAGAAATC TTTTACTTGA 240 TGTTTGCTTT GAATTGGATT CTATGCCACC AAGGATAGGA TCTTTGACAT GCCTTAAGAC 93326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGCTTT GAATTGGATT CTATGCCACC AAGGATAGGA TCTTTGACAT GCCTTAAGAC 300 TCTAAGTAGA TTTGCAGTGG GGAGGAGGAA AAGTTGTCCA CTTGGTGAAT TACGAAACCT 93386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAAGTAGA TTTGCAGTGG GGAGGAGGAA AAGTTGTCCA CTTGGTGAAT TACGAAACCT 360 GAATCTGTAT GGGTCAATTG AAATCACGCA TCTTGAGAGA GTGAAGAATG ATAGGGATGC 93446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCTGTAT GGGTCAATTG AAATCACGCA TCTTGAGAGA GTGAAGAATG ATAGGGATGC 420 AAAAGAAGCC AATTTATCTG CAGAAGAAAA TCTGCATTCT TTAAGCATGG AATGGAAAGG 93506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGCC AATTTATCTG CAGAAGAAAA TCTGCATTCT TTAAGCATGG AATGGAAAGG 480 ACCACATAGA TATGAATCAG AAGAAGTTGA AGTGCTTGAA GCCCTCAAAC CACACTCCAA 93566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACATAGA TATGAATCAG AAGAAGTTGA AGTGCTTGAA GCCCTCAAAC CACACTCCAA 540 TATGACTTGT TTAACAATCA CTGGCTTCAG AGGAATCCGT CTCCCAGAGT GGATGAATCA 93626 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGACTTGT TCAACAATCA CTGGCTTCAG AGGAATCCGT CTCCCAGAGT GGATGAATCA 600 CTCAGTTTTG AAAAATGTTG TCTCTATTGC AATTAGAGGT TGTGAAAACT GCTCATGCTT 93686 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CTCAGTTTTG AAAAATGTTG TCTCTATTGC AATTAAAGGT TGTGAAAACT GCTCATGCTT 660 ACCACCGTTT GGTGATCTGC CTTGTCTAGA AAGTCTAGAG TTATGGAGTG GGTCTGCGGA 93746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCGTTT GGTGATCTGC CTTGTCTAGA AAGTCTAGAG TTATGGAGTG GGTCTGCGGA 720 GGTGGAGTAT GTTG 93760 |||||||||| |||| GGTGGAGTAT GTTG 734 hqPGS_C08SLe0082C24.1+_SGN-U331884+ (93027 93760) ******************************************************************************** EST sequence 12 +strand 804 n (File: SGN-U326226+) 1 AGGAAGGAGA AGAGAAATTC CCCATGCTTG AAGAGATGGC GATTTTACAT TGCCCTCTGT 61 TTGTTTTTCC AACCCTTTCT TCTGTCAAGA AGTTAGAAGT TCACGGCAAC ATAAAAGCAA 121 GAGGTTTGAG CTCCATATCT AATCTTAGCA CTCTTACTTC CCTCCGCATT GGTGCTAACT 181 ATGGATCGAC TTCACTCCCA GAAGAGATGT TCACCAGTCT TACATATCTC GAATACTTGA 241 GTTTCTTTGA CTTCAAGAAT CTCAAAGAGC TGCCAACCAG CCTGACTAGT CTCAATGCTT 301 TGAAGCGTCT CCAAATTGAA AGTTGTGACT CTCTTGAGAG TTTCCCTGAA CAGGGGCTGG 361 AAGGTTTAAC TTCACTCACA CAGTTGTTTG TTAAATACTG TAAGATGCTA AAACGTTTAC 421 CCGAGGGATT GCAGCACCTA ACAGCCCTCA CAGATTTAGG AGTTACTGGT TGTCCAGAAG 481 TGGAAAAGCG CTGTGATAAG GAAATAGGAG AAGACTGGCA CAAAATTGCT CACATTCCAA 541 ATCTGGATAT TCATTAGTCT TAGTGTCATT GTTTGTTGGA TTCTTTCTTT GTGAGTCCCC 601 CTCAAGTTTC GTATCGTAGT TAGAGATCTT TTTATTCAAA TATTATTTCT GTTGTATTAA 661 TTAACAAGCC ATTAAAAATA ATTAGTGTCA AATCAAAACA AGACAAACGA GGGACAGAAG 721 TAATTAAAAA AGATGTAATA GATTAGATAA ACCATTTTTT CAATAAGAGC TTCACCAATT 781 CCAAATAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 90924 to 98697): Exon 1 93836 94284 ( 449 n); cDNA 4 448 ( 445 n); score: 0.777 PPA cDNA 783 804 MATCH C08SLe0082C24.1+ SGN-U326226+ 0.777 449 0.558 C PGS_C08SLe0082C24.1+_SGN-U326226+ (93836 94284) Alignment (genomic DNA sequence = upper lines): AAGGATTGCT GCAATTCCCC GTGCTTGAAG AGTTGACAAT TAGGTGTTGT CCTGTGTTTG 93895 ||||| | |||||||| ||||||||| || || | || | ||| ||| |||||| AAGGAGAAGA GAAATTCCCC ATGCTTGAAG AGATGGCGAT TTTACATTGC CCTCTGTTTG 63 TTATTCCGAC CCTTTCTTCT GTCAAGAAAT TGGTAGTTTA TGGGGACAAG TCAGATGCAA 93955 || |||| || |||||||||| |||||||| | | | |||| | || || | | | | |||| TTTTTCCAAC CCTTTCTTCT GTCAAGAAGT TAGAAGTTCA CGGCAAC-A- T-AAAAGCAA 120 CAGTTTTGAG GTCCATATAT AATCTTAGGG CTCTTACTTC CCTCACCATT AGCCTTAACT 94015 || |||||| ||||||| | |||||||| |||||||||| |||| |||| | ||||| GAGGTTTGAG CTCCATATCT AATCTTAGCA CTCTTACTTC CCTCCGCATT GGTGCTAACT 180 CCATAGCTAC TTCGCTCCCA GAAGAGATGT TCAAAAGCCT TGCAAATTCT CAAATACTTG 94075 | | || ||| |||||| |||||||||| ||| || || | || | ||| | |||||||| ATGGATCGAC TTCACTCCCA GAAGAGATGT TCACCAGTCT TACATA-TCT CGAATACTTG 239 GAAATCTCTT TCTTCGACAA TCTCAAAGAG CTGCCAAACA GCCTGGCTAG TCTCAATGCT 94135 ||| | |||| | || |||||||||| ||||||| || ||||| |||| |||||||||| AGTTTCTTTG ACTTCAAGAA TCTCAAAGAG CTGCCAACCA GCCTGACTAG TCTCAATGCT 299 TTGAAGCATC TGGAGATTAG TTGTTGTCCC AAACTGGAGA GTCTCCCCGA GGAAGGGGTG 94195 ||||||| || | | ||| ||||| | || |||| || |||| || | ||| || TTGAAGCGTC TCCAAATTGA AAGTTGTGAC TCTCTTGAGA GTTTCCCTGA ACAGGGGCTG 359 AAAGGTTTAA CTTCACTCAC ACAGTTATCC ATTACATACT GTGAGATGCT AAAACGTTTA 94255 ||||||||| |||||||||| |||||| | ||| ||||| || ||||||| |||||||||| GAAGGTTTAA CTTCACTCAC ACAGTTGTTT GTTAAATACT GTAAGATGCT AAAACGTTTA 419 CCAGAGGGAT TGCAGCAACT AACAAGACT 94284 || ||||||| ||||||| || |||| || CCCGAGGGAT TGCAGCACCT AACAGCCCT 448 hqPGS_C08SLe0082C24.1+_SGN-U326226+ (93836 94284) ******************************************************************************** EST sequence 18 +strand 796 n (File: SGN-U339740+) 1 CTTGACACCA AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GTTTTTTTTT TGTTTTACTG AAATTTTAGT TCAGTTGATT GACTATCTGA 121 ATTTTCACGT CTGGTTGGAT TTTTCGTGCC GTGTAGGAAG TTATTTCATT AATTTTAAAT 181 AATAAATTAA AGAGATCGAA GTAAATAGAT GAACTGAAAG AGCATGATGT TGTTATCATG 241 TGTTGGTTTC CTTTGTTGGT TCTTAATCAG ATATTTCGAG TTTTGAGTTT TTAGAAACAA 301 AAAGAATCTT TGATGCCTGA CATGCTGATC ACTGCTAAAA ATTATTATTT TCCCATTGAA 361 AAATATTTAG TGGTTGATTT CACTAATGTT TTGATTGAAT TGGTGGATTA AGAAAAAATA 421 GTATAATAGT AATGGTTTTG TTGAATGCCT TGAATCGGGC CCATACCTGT TAGGGCGTAG 481 CTTAGCTCTA TATATAGACC CTATGGGAAA CCCTATTCTG TAATTCTGTA TTTGCCTCTC 541 CATACTAAAA CTGCTCCCTC TTTTTCCGTG GACGTAGCCA ATATATTGGT GAACCACGTA 601 AATTTTGTGT CTTGTTTTTC GCGTTAATAT TTACTCGATT CATATTAAAT TTCGGATATC 661 AATGTTCATT TTCAAAAAGT TGGATTTTTG CTTTCATATT TGTGAGAATA TGTCGTACCA 721 TTATCTTTTT CCCTAATGAG TTAGGATCAT GGGAAAATCA CACGAGTAAA TATTGGAATT 781 TTTGCCCAAA TTTTCC Predicted gene structure (within gDNA segment 93347 to 101697): Exon 1 94302 94330 ( 29 n); cDNA 313 341 ( 29 n); score: 0.690 Intron 1 94331 95096 ( 766 n); Pd: 0.976 (s: 0), Pa: 0.000 (s: 0) Exon 2 95097 95120 ( 24 n); cDNA 342 364 ( 23 n); score: 0.708 Intron 2 95121 96255 (1135 n); Pd: 0.000 (s: 0), Pa: 0.920 (s: 0.64) Exon 3 96256 96295 ( 40 n); cDNA 365 402 ( 38 n); score: 0.637 Intron 3 96296 96538 ( 243 n); Pd: 0.000 (s: 0.64), Pa: 0.160 (s: 0) Exon 4 96539 96561 ( 23 n); cDNA 403 426 ( 24 n); score: 0.587 Intron 4 96562 97439 ( 878 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 5 97440 97459 ( 20 n); cDNA 427 446 ( 20 n); score: 0.700 Intron 5 97460 98992 (1533 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.77) Exon 6 98993 99206 ( 214 n); cDNA 447 662 ( 216 n); score: 0.836 MATCH C08SLe0082C24.1+ SGN-U339740+ 0.836 350 0.440 C PGS_C08SLe0082C24.1+_SGN-U339740+ (94302 94330,95097 95120,96256 96295,96539 96561,97440 97459,98993 99206) Alignment (genomic DNA sequence = upper lines): ATTCCTCATC TGCTGATTAC TGATTAGATG TAATTTTCTC ATTTTTCTTT TGGAAACAAA 94361 || ||| | ||||||| || || | | | ATGCCTGACA TGCTGATCAC TGCTAAAAA. .......... .......... .......... 341 TCAACTATTT GTAACCTCTA TTTGTATGAT ACTTGATTTT TCTTGGTTAT GTAACAATAA 94421 .......... .......... .......... .......... .......... .......... 341 ATATTTGAAA TTTTTCATAT TAAAGATTCA GAATGAGTTT TATAGCTAAC TCTATATTCT 94481 .......... .......... .......... .......... .......... .......... 341 CACAGTTTAA TAACGTAAAT ATGATATTCA TATCAAATTA TTACTTAGGT TGTGATTTAT 94541 .......... .......... .......... .......... .......... .......... 341 CAACATGTTG GAGATGATTT TGACAGTTTA TTAAAGAATT TCTAAGTTTT TATTGTTTGC 94601 .......... .......... .......... .......... .......... .......... 341 ACAAGTAACA AGCCATAAAT TAAGTTTCGA GATAAAATTG ATTTGTGTAT CATGGCTTAA 94661 .......... .......... .......... .......... .......... .......... 341 TTAGTCGGAA TTTCAAGTTT TTTCACAAGT TATATATATG GCAATTTGTA AAAATTAGAT 94721 .......... .......... .......... .......... .......... .......... 341 AGTATTCATT TTGATTTAAT TCAAGTATTT TTAAAAATAT ATACAAATAA TATGGGGGAT 94781 .......... .......... .......... .......... .......... .......... 341 ACACACGCTA AACGCGTACC CAGAAATTAG TATATAAAGA ATCAGGACCG AAAAATAAAA 94841 .......... .......... .......... .......... .......... .......... 341 TGAAGCTCTG TCACCAACTA TCTCGACATC TTTGCTGATA TATATATATC TAACTAGTGT 94901 .......... .......... .......... .......... .......... .......... 341 ACTTATTCGG ACTTGACATG GTATATTTGA TGTACTGTTT ATTCTCCATT TATTCTCTAT 94961 .......... .......... .......... .......... .......... .......... 341 AACTAAATAT ACTCGGAATC ATATTATATT ATAAGTGGGA AGCCTCTACT TCAAAAGTTG 95021 .......... .......... .......... .......... .......... .......... 341 AATTACAAAA ATGTCCTTAT AACATCATAA TATTTTTGGA CAAAAATGTA AATGTATATT 95081 .......... .......... .......... .......... .......... .......... 341 ATTTATAAAT AAAAGCTATT ATATTTTCTA TTAAATACTA CACATTGATT ATAATAAAAA 95141 |||| || ||| | | || || | | .......... .....TTATT AT-TTTCCCA TTGAAAAAT. .......... .......... 364 ATTAATATTC TAAAAATGAA GAACTTATCA TCTATGACAT GAATTTATCT TTAGATACAA 95201 .......... .......... .......... .......... .......... .......... 364 TGAACATTTG TAATTAAATG ACAAAAGGAA ATCAAAAGTT TTGTAACCGT TAAAATTATC 95261 .......... .......... .......... .......... .......... .......... 364 GTTTAAGTGT ACCTCCTTTA CTCCTACAGG GTAAAGGTAT ACAATTTTTC AGATGAATTA 95321 .......... .......... .......... .......... .......... .......... 364 TATTCATAAC ATTATATTAA ATGCTAAGTA GTTGCTTCAA AAATACTTAC AATGGAAGCT 95381 .......... .......... .......... .......... .......... .......... 364 TGCAATCGTT GGACTTTCAA TTTTCTTTCT GTTATAATTA GCACAAACTA ACAATGAATT 95441 .......... .......... .......... .......... .......... .......... 364 ATATACTTGG TAAATTGATT AAATTTATCT TATAATATAT ATCATATTAT ATTAAAAAGG 95501 .......... .......... .......... .......... .......... .......... 364 AGAAAGCTTT TTTTGGTGCA AAGTTAGATT TACCAAAATA TCTATCAAAA ATTAAAATTT 95561 .......... .......... .......... .......... .......... .......... 364 TATACCCTTT AAGGATGAAA TTAGTCATAT AACATTAATA AAAATATATT AATTAAATTT 95621 .......... .......... .......... .......... .......... .......... 364 CTTGGAATTA ATAATATTGT TTCAATTTTT TAAACAACTT AATATGTCAT TTATGTGAAG 95681 .......... .......... .......... .......... .......... .......... 364 TCTTTATAAC TTCAAAAGTT ATACTTTTCA AATTCCAATA CCTTAATCAT TTTCCCATCT 95741 .......... .......... .......... .......... .......... .......... 364 TCTTTTTTCA GATTTTTTTT TATTAATTAT TTAAAAAACT AATCATACTC AATCTTATTT 95801 .......... .......... .......... .......... .......... .......... 364 AATAAATTTC ATTAAATCTT AATTAATAAT ATATTTGATT TCTTATCAGT TACAAATATT 95861 .......... .......... .......... .......... .......... .......... 364 ATATATTTTC ATATTAACTT CAATTGTATT TGTCTTCTAA TAGCTTCTCT AAAGTTGCAT 95921 .......... .......... .......... .......... .......... .......... 364 CATATTATAA AAAGTTCAAA AGTTAAGAGA GAAAATAATC AAATTTTCAA GAGTTTTTTC 95981 .......... .......... .......... .......... .......... .......... 364 TCTTTATAAG TTCCTCCAAC TCTTTCACCC CTTCCCTTTT TAGGCAATCT ATTTAGTTAT 96041 .......... .......... .......... .......... .......... .......... 364 TTGACGTATT TGTAGTTGTA TCTCTTTTGT ATAGACTATT CGCTTGTAAG AATATATTTG 96101 .......... .......... .......... .......... .......... .......... 364 TTGCAATTAA TCGTTACTCT GATAATATGT TTGTTGTAGT TTTTAATTGT CAATATCACT 96161 .......... .......... .......... .......... .......... .......... 364 ATTCATTGTT GATTTTTGTT TGACTTTATG TGTTTCTTCT TCTTTTTCTT ATCGACACAC 96221 .......... .......... .......... .......... .......... .......... 364 TCTAACAATG TATTTGGTTT TCTTCCTTCC ACAGATTTA- CGGTTAATTT CTATCTATGT 96280 ||||| |||| |||| | | ||| | .......... .......... .......... ....ATTTAG TGGTTGATTT C-A-CTA-AT 387 GATTGGATTT AGAAGGTCTT CACGGCTTGC GGCTTGCATG AATGATGAGG GAGATGGTAA 96340 | || |||| | | GTTTTGATTG AATTG..... .......... .......... .......... .......... 402 GTTAGTTATC AGTTTCTCTA TATTTTCACA ACTTTTATCG TATAAATTAT TCTAGCTAGA 96400 .......... .......... .......... .......... .......... .......... 402 TTGTGTTGAT TAATATATTG ATGTATAGAC CTTGAAGTAA GAATGCAAAA GAAAAAAGGA 96460 .......... .......... .......... .......... .......... .......... 402 CAAGAAGTGC TAAAATATTG TATATGAAAT AGAGAATGCA TTGAATTCAT ATATTTTCAT 96520 .......... .......... .......... .......... .......... .......... 402 TAATTAATAT GTGAAAAGAT GGATATATAA AGAAT-GACT AAATATCATT CGAACACATC 96579 | |||| | || | ||| | | || .......... ........GT GGATTAAGAA AAAATAGTAT AA........ .......... 426 AAAACAAGGT GTGATTCGAT AATTTTTGTA ATAACAAATA TATTTTTATT TTTTTACAGC 96639 .......... .......... .......... .......... .......... .......... 426 ACTCTAATAT ATATATATAT ATATATGTAT GTATATATAT ATATATATCC AAAGTTGAGA 96699 .......... .......... .......... .......... .......... .......... 426 AGTTGAATGA ATAGTCATTT TGCCCTTTAA TCCAAAATAA TTCCTATAAT AAAAAATGGA 96759 .......... .......... .......... .......... .......... .......... 426 AACATCAAAA CTTCAAAGTT GGATTATTAT TTTGTCGTCT GTCCATATAC TATAGTTAAA 96819 .......... .......... .......... .......... .......... .......... 426 TATTATACTA ATTAAATAGT AAGTATTAGT TGTAATTCCT TTTTCTTCCT GTTAATATTA 96879 .......... .......... .......... .......... .......... .......... 426 ATTAAACAAT AAGTTAGTTG TAATTTTTTT TCTCTCCATG TTATTTAATG TTTTACTCCT 96939 .......... .......... .......... .......... .......... .......... 426 TAAATTTTTA ATTTAATAAT TAGTTGAATT TCTATTTTAA TGCTCCTCAT AATGCTTACT 96999 .......... .......... .......... .......... .......... .......... 426 TTAATTCTCC ATTGGATTAC TATTTTATCT CTATATCAAA TCAAATGTTA TATAATATAT 97059 .......... .......... .......... .......... .......... .......... 426 GGTTATATAT AAAATTTAAA TTATCACTAC AAATTTTCAG ATGAATTAAA ATTATAGATC 97119 .......... .......... .......... .......... .......... .......... 426 ATTTTTTAAT TTTAATTTCT AGAAATATCT CAACAGTTTT ATTTGTAGAT TAGTACATTT 97179 .......... .......... .......... .......... .......... .......... 426 TTCAGGTTGA TGCATCATTC ACTTTAATTA TACGAATAAT TCAAACTTTC AGAGTGTTTA 97239 .......... .......... .......... .......... .......... .......... 426 ATTATTAATG TAGTATTATT AAATACTAAG CAATGACTAC AATAAAATAT TTAAAGGAAA 97299 .......... .......... .......... .......... .......... .......... 426 AAATATTTAA GAATAAATAT CATAAATATG TAATCACTAT ATGATAATGG TAAATCACTT 97359 .......... .......... .......... .......... .......... .......... 426 AAACTATTTG TCATTGATAT GCACTTCAAA ACTCAATATA GAATTGAATT TTTAGATTAA 97419 .......... .......... .......... .......... .......... .......... 426 TATTTGCATA TTTGTCTTCT TAATAAAGCT TTCATTAAAT ATATACTTTA ACATTTTATC 97479 || ||| | | || || ||| .......... .......... TAGTAATGGT TTTGTTGAAT .......... .......... 446 ATCCCATTAT ATTTTCTTCA TTTACAGAAA TCTGATATTT ATAATTCACT TATTTTGATA 97539 .......... .......... .......... .......... .......... .......... 446 CAATAAAATA CAAAAATGAA GTGTTGTAAA AACAATTAAT TATAATATTA GTAAAAGCTC 97599 .......... .......... .......... .......... .......... .......... 446 TTAAAAGAAG TTTTCATTTC TCCATCAGAT ACAATATATT ACAAATAAAA TACTACAGAA 97659 .......... .......... .......... .......... .......... .......... 446 TTATTGTAAA TAGATTGTTT AAAAGTGCAA GTCAATAATT TCTAGGTTTA ATTTTTATTC 97719 .......... .......... .......... .......... .......... .......... 446 AATATGTGTT TAATACTATA CACCTTGACT ATCTCCTCAT TAATCTTCCA CACTCATATA 97779 .......... .......... .......... .......... .......... .......... 446 ATCTTTTCCA CATTCTCAAG AAATTAATGT CATATTTAAA ACACTCTTTG ATTTTACTTA 97839 .......... .......... .......... .......... .......... .......... 446 ATCATATCCT AGAAATGGTG TCATTTTATA CATTATGAAG AGACTTTTGC CCACTTCGAA 97899 .......... .......... .......... .......... .......... .......... 446 GAAACAAAAA AAAAAACATC TCTAACTGTC ACTATATTTC TGTTGGTTTT ATCTTTCAGT 97959 .......... .......... .......... .......... .......... .......... 446 AGTATTAATT TTAGCTTCAT TTTATAACAC GAAGCACTTT GTTACTCATA TATTCTTTTG 98019 .......... .......... .......... .......... .......... .......... 446 TTGCAACAGA AACAAAATAT ATTGTGTACA AATTCCTACT ACTACTAATC GAGCTTGCAA 98079 .......... .......... .......... .......... .......... .......... 446 TGAGAGAAGG CATGTTGAAA TCTTCAAGGA GACTGAATTC AATCTTTTGA CGATCGATGT 98139 .......... .......... .......... .......... .......... .......... 446 GGAATGTTAA CAACTTAATT AGTAAATGCG ATTATTTTTA TATTTATAAA GTTAGGCTTA 98199 .......... .......... .......... .......... .......... .......... 446 TATAAATTTT ATGTAATAGT AGGGATCAAA CGTGCAACGC ATGTTTCCAA GACTAGTTAT 98259 .......... .......... .......... .......... .......... .......... 446 TAATATATAC CCCACCGCCG TGGAAGTTTA CCCACGGGGT GTTACCACGA AATTTCTCTC 98319 .......... .......... .......... .......... .......... .......... 446 TCTCTATATC TCTCATCTCT CTCTCAAAAG TTCTTGTGTT CTTCATTCAT CAAGTGTATG 98379 .......... .......... .......... .......... .......... .......... 446 TGTGAATTCG ATCCTAACAA TGACAAGAAC CTAAAATCAT ACAAGTTGGG GGAAAAAAGC 98439 .......... .......... .......... .......... .......... .......... 446 TCATTATCAT GACTTGGAGG ATAGTTGAGT TCTTCCACAA TGAGTTGTTT GGTTTATTTA 98499 .......... .......... .......... .......... .......... .......... 446 TCGAAAGCAA GGGTTAAAGT TCTACGTTGC ATTGACAATT GCTCCTCCTT CTCGACGTTG 98559 .......... .......... .......... .......... .......... .......... 446 ATTTGAGGGA TGAATAAAAT TTGGACTTGA AATTCAAGAA TGTCATGATA GTGAAACACA 98619 .......... .......... .......... .......... .......... .......... 446 CTTGAATCGT AATAGAGATT TCACAGATAA AATTGAAAGA ATTATCATAA TGGTTTCATT 98679 .......... .......... .......... .......... .......... .......... 446 GGGTAGATAC ACCATCTCGA CAAGTAGTAG ATTTTCTGGG TAATTTTAAT TCTCGTATTT 98739 .......... .......... .......... .......... .......... .......... 446 CTGATATAGA CATATGCTCA CAAATTTTAA CTGTCTATTG TTGTTCCCTA ATTAAATATA 98799 .......... .......... .......... .......... .......... .......... 446 CACCTTCTCT GTTTCAACTT TCCAACAGTT TTGTGCTAAT GTATTTGTTG TTGCATTTAT 98859 .......... .......... .......... .......... .......... .......... 446 TTATTCAAAC TTAATCTGTT CCAAAATATC ATCAGAGTAC AAACTAAAGG ATTCAACATG 98919 .......... .......... .......... .......... .......... .......... 446 CCTTGACTAC ATTTTATACT GTCAATGGCG ATGCTACAGC TGTTGAATGC CTTGAATCGG 98979 .......... .......... .......... .......... .......... .......... 446 ACCCGCTACA AACAGAAAGG AT-GGGCCCA AGCCTGTTAG GGCGTAGCTT AGCACTATAT 99038 | || ||||||| |||||||| |||||||||| ||| |||||| .......... ...GCCTTGA ATCGGGCCCA TACCTGTTAG GGCGTAGCTT AGCTCTATAT 493 ATAGACGCTA TGGGAAATCC TATTCTGTAA TTCTGTTTTT GCCTCTCCAT AATAAAACTG 99098 |||||| ||| ||||||| || |||||||||| |||||| ||| |||||||||| | |||||||| ATAGACCCTA TGGGAAACCC TATTCTGTAA TTCTGTATTT GCCTCTCCAT ACTAAAACTG 553 CTCCCTCTCT TCCCGTGGAC GTAGCCAATT TATTGGTGAA CCACGTAAAC TGT-TGTCTT 99157 |||||||| | | |||||||| ||||||||| |||||||||| ||||||||| | | |||||| CTCCCTCTTT TTCCGTGGAC GTAGCCAATA TATTGGTGAA CCACGTAAAT TTTGTGTCTT 613 GTTTTTCGCA TTTATATTTT CTCGTATTAT CTCAAATTCC GCACAACAA 99206 ||||||||| || |||||| |||| | || | ||||| | | | | ||| GTTTTTCGCG TTAATATTTA CTCGATTCAT ATTAAATTTC GGATATCAA 662 hqPGS_C08SLe0082C24.1+_SGN-U339740+ (95097 95120,96256 96295,96539 96561,97440 97459,98993 99206) ******************************************************************************** EST sequence 4 +strand 1754 n (File: SGN-U314435+) 1 AAAAAGTGCA GAAAAAACCA ACTAATTGCA TTCTCCATTC TTGGAAGTGG CCATTCTTGA 61 TTTCTTGAAA CAAAGGTTTG TTTCCCTTCA CTTCTTGATA TGTAAAGTTG CAATCTTTAT 121 AACTTTCTAT TGCTTTGCTA GTGTTTTTGT TATATACAGG GGGTGGAGTT AGAGGGTAAG 181 TTACGCATTT AGTCGTAACT TTAGTCAAAC TTCGTAATAA TTTAGTAAGT TAAAATATAT 241 TAGAAATTTT CAGAATTCAT AAACTTTAAA TTTTAAATTT TGACTTCGCT TTGTGTGACT 301 ATACAATTAC AGAAATTCAG AGTGGCCATT GTTGAAAGAG AGGGTGGAAT TTGTAAGTCA 361 AGAAACAGGT TACTCCTGTT TGAGTGAGGA AAAGTTGGTT TGCCTGTCTG TGGTCTTTTT 421 ATAATCTTTT TCTACAGAAG AGAAAGTGGG TAATTTTGTT TGAGAGTGGA AATATTCTCT 481 AGTGGGAATC TACTAGGAGT AATTTATTTT CTATAAACTA AGTAAAGTTT GGAAGGTGAC 541 AAAAAGAAAG ACAAAAATCT TGGAATTGTT TTAGACAACC AAGGTTTTCT TGCTCAGAAT 601 GTCTGTTGCC TTGTTATGGG TTGTTTCTCC TTGTGACGTC TCAAATGGGA CAAGTTTCAT 661 GGAATCAGTC CGGGAGGGAA ACCGTTTTTT TGATTCATCG AGGCATAGGA ATTTGGTGTC 721 CAATGAGAGA ATCAATAGAG GTGGTGGAAA GCAAACTAAT AATGGACGGA AATTTTCTGT 781 ACGGTCTGCT ATTTTGGCTA CTCCATCTGG AGAACGGACG ATGACATCGG AACAGATGGT 841 CTATGATGTG GTTTTGAGGC AGGCAGCCTT GGTGAAGAGG CAACTGAGAT CTACCAATGA 901 GTTAGAAGTG AAGCCGGATG TTGAATGCCT TGAATCGGAC CCGCTACAAA CAGAAAGGAC 961 GGGGGTCTCG CTGCCCGGTC AGCGAGTCGG GGGGTCCAGG GGGGCGACGC GCTGGCCTGG 1021 GGGTCCGGGG GGGCGGAGAC GCGGCGCCGA CGGTATACAA TGTTGTTGTA TTGGGCCCTT 1081 AATTTTCTGT TGATTCTGTA TGTTGGGCCC AAGCCTTTTA GGGCGTAGCT TAGCACTATA 1141 TATAGACGCT ATGGCAAACC CTATTCTGTA ATTCTGTTTT TGCCTCTCCA TAATAAAATT 1201 GCTCCCTCTC TTCCCGTGGA CGTAGCCAAT TTATTGGTGA ACCACGTAAA TCTGTTGTCT 1261 TGTTTTTCGC GTTTATATAT TTTCTCGTAT TATCTCAAAT TTCGCACAAC ACTCTTAATA 1321 TTCATAACTA TCATCTTTTC ATATTCATAA CCTCCAAATA TTTAAATTAA ACTTTAAGAT 1381 ATCTTTTGGT ATTCCTTCTA TTCTATTTGT ATAAATTCAA CTTCTTTATC TCATGAAACC 1441 CCTATCAAGA TTATTATTTT TATTCTATAG TAAAAATAGA TGCTGAAAAC TCTTGAATTT 1501 TGATAGGATA TGAAAGGAGT CGATAAAAAC TCAGAGAGTT ATGTACTAAT TTTTACTTAT 1561 TTTTTCATCT ATATATACAT CAATCTTATA AGAATAATGT CTATATTGTA TTTTTTTCTT 1621 AAATATTCTG TTTCTTTTAG TCTTTTTTTT CACTCTGTTA GACTTCTTAA TTTAGTTTTC 1681 TATGAATGAT TTATTGTCGT ATGTCTTTGA ATTTTGTAAT TGTTACATTT TATTATTCAT 1741 TACAATTTAC ATAT Predicted gene structure (within gDNA segment 93599 to 108601): Exon 1 98960 99019 ( 60 n); cDNA 919 978 ( 60 n); score: 0.817 Intron 1 99020 100325 (1306 n); Pd: 0.876 (s: 0.78), Pa: 0.000 (s: 0.48) Exon 2 100326 100371 ( 46 n); cDNA 979 1024 ( 46 n); score: 0.478 Intron 2 100372 101439 (1068 n); Pd: 0.264 (s: 0.48), Pa: 0.000 (s: 0.52) Exon 3 101440 101499 ( 60 n); cDNA 1025 1081 ( 57 n); score: 0.517 Intron 3 101500 102225 ( 726 n); Pd: 0.900 (s: 0.52), Pa: 0.988 (s: 0) Exon 4 102226 102246 ( 21 n); cDNA 1082 1101 ( 20 n); score: 0.667 Intron 4 102247 103315 (1069 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 5 103316 103530 ( 215 n); cDNA 1102 1319 ( 218 n); score: 0.905 Intron 5 103531 104459 ( 929 n); Pd: 0.000 (s: 0.75), Pa: 0.000 (s: 0.62) Exon 6 104460 104529 ( 70 n); cDNA 1320 1388 ( 69 n); score: 0.586 Intron 6 104530 104963 ( 434 n); Pd: 0.000 (s: 0.58), Pa: 0.887 (s: 0) Exon 7 104964 104972 ( 9 n); cDNA 1389 1397 ( 9 n); score: 0.778 Intron 7 104973 106587 (1615 n); Pd: 0.000 (s: 0), Pa: 0.931 (s: 0) Exon 8 106588 106605 ( 18 n); cDNA 1398 1413 ( 16 n); score: 0.667 Intron 8 106606 107454 ( 849 n); Pd: 0.000 (s: 0), Pa: 0.541 (s: 0) Exon 9 107455 107479 ( 25 n); cDNA 1414 1437 ( 24 n); score: 0.720 MATCH C08SLe0082C24.1+ SGN-U314435+ 0.779 524 0.299 C PGS_C08SLe0082C24.1+_SGN-U314435+ (98960 99019,100326 100371,101440 101499,102226 102246,103316 103530,104460 104529,104964 104972,106588 106605,107455 107479) Alignment (genomic DNA sequence = upper lines): TGTTGAATGC CTTGAATCGG ACCCGCTACA AACAGAAAGG ATGGGCCCAA GCCTGTTAGG 99019 |||||||||| |||||||||| |||||||||| |||||||||| | ||| ||| || TGTTGAATGC CTTGAATCGG ACCCGCTACA AACAGAAAGG ACGGGGGTCT CGCTGCCCGG 978 GCGTAGCTTA GCACTATATA TAGACGCTAT GGGAAATCCT ATTCTGTAAT TCTGTTTTTG 99079 .......... .......... .......... .......... .......... .......... 978 CCTCTCCATA ATAAAACTGC TCCCTCTCTT CCCGTGGACG TAGCCAATTT ATTGGTGAAC 99139 .......... .......... .......... .......... .......... .......... 978 CACGTAAACT GTTGTCTTGT TTTTCGCATT TATATTTTCT CGTATTATCT CAAATTCCGC 99199 .......... .......... .......... .......... .......... .......... 978 ACAACAAATT GGTATCAGAG CCTCTCGGTT AATCGATGTT CTTGGAGAAT TTGAGATGTC 99259 .......... .......... .......... .......... .......... .......... 978 TGCTTTGAAC GTGAAAATCG ACAAATTCAC AGGGAGGAAC GGTTTCAGTT TATGGCAGAT 99319 .......... .......... .......... .......... .......... .......... 978 CAAGATGCGG GCTTTGTTGA AACAGCAAGG CTTCTGGGCG CCGTTGTCGA AAGACAAGAA 99379 .......... .......... .......... .......... .......... .......... 978 CGCCGTCGTT ACTCCTGAGA TGGCGATTCT GGAGGAAAAG GCGCACTCGA CGATCATGCT 99439 .......... .......... .......... .......... .......... .......... 978 GTGTCTCGCG GATGACGTCA TCACGGAGGT CTCGGATGAA GAGACTGCTG CTGGTCTGTG 99499 .......... .......... .......... .......... .......... .......... 978 GTTGAAGCTG GAGAGTTTGT ACATGACAAA ATCTCTAACC AACAAGCTGC TTCTGAAACA 99559 .......... .......... .......... .......... .......... .......... 978 ACGTCTATTC GGTTTACGAA TGGCTGAAGG TACACAACTC AGGGAACACT TAGAGCAATT 99619 .......... .......... .......... .......... .......... .......... 978 GAATATTTTG CTATTAGAAT TGCGTAATAT CGATGTGAAG ATCGAGGATG AAGATGCTGC 99679 .......... .......... .......... .......... .......... .......... 978 CCTGATTCTG TTAGTATCTC TCCCAATGTC GTTCGAGAAT TTTGTTCAAT CGTTCATTGT 99739 .......... .......... .......... .......... .......... .......... 978 TGGGAAAGAT ACTGTGTCAC TGGAAGAAGT CAGATCGGCC CTTCATAGCA GGGAATTACG 99799 .......... .......... .......... .......... .......... .......... 978 GCATAAGGCT AACGGCACAA GTACGGACAT ACAGCCTTCC GGTCTGTTCA CCAGTAGCGG 99859 .......... .......... .......... .......... .......... .......... 978 AAAGGGAAGG AAAAATGGCG GAAAGAAAAA TAAGCCGATG TCGAAGGGTG CAAAGCCGGA 99919 .......... .......... .......... .......... .......... .......... 978 TGATGTTTGT AATTACTGCA AGGAGAAGGG ACATTGGAAA TTTGATTGTC CGAAGAAGAA 99979 .......... .......... .......... .......... .......... .......... 978 GAAGCAATCG GAAAAACAAT CAGTGTCTGC TGTTGTTGCT GAAGAAGACA CCAATTCTGA 100039 .......... .......... .......... .......... .......... .......... 978 AGAAGATATT GCCCTAGTTG CGGATGAGCA CACTCATTAT TCAGATGTGT GGATTCTTGA 100099 .......... .......... .......... .......... .......... .......... 978 TTCTGGGGCA TCCTATCACA TCTGTCCTAG GAGAGAGTGG TTCACGACTT ATGAGCAGGT 100159 .......... .......... .......... .......... .......... .......... 978 AGACGGAGGC AGCATCTCGA TGGCCAACAG TTCTGTCTGC AAGGTGGTTG GGACAGGCTC 100219 .......... .......... .......... .......... .......... .......... 978 GATCAAGATA AGGACACATG ACGGTAGCTT CTGCACATTG AACGAGGTCA GGCACGTTCC 100279 .......... .......... .......... .......... .......... .......... 978 ATTGATGACG AAAAATCTGA TATCTCTCAG TCTTTTGGAC AGCAAGGGAT TCAGCTGGTC 100339 | || || .......... .......... .......... .......... ......TCAG CGAGTCGGGG 992 GGGAAAAGAT GGAGTCTTGC GGGTCTGGAA GGGTTCAAAT TTGATTCTGA AAGGTGTCAT 100399 || | | || | | || || |||| | GGTCCAGGGG GGCGACGCGC TGGCCTGGGG GT........ .......... .......... 1024 GCGTGGTACT TTGTATTTTC TACAAGGTTC CACGGTTACA GGTTCAGCCC ATGTTGCATC 100459 .......... .......... .......... .......... .......... .......... 1024 GTCAGAATTT CACCAGAAGG ATATGACTAA GTTATGGCAC ATGAGACTTG GTCATATGGG 100519 .......... .......... .......... .......... .......... .......... 1024 TGAAAGAGGG ATGCAAATTC TGTCAAAGGA GGATTTACTT GCTGGTCATA AGGTTAAGAG 100579 .......... .......... .......... .......... .......... .......... 1024 CCTAGAGTTT TGTGAACATT GTGTTTTTGG AAAACTACAT CGCAACAAGT TTCCAAAGGC 100639 .......... .......... .......... .......... .......... .......... 1024 CATTCATAGA ACAAAAGGCA CACTTGATTA TATCCATTCT GATTGCTGGG GTTCATGCCG 100699 .......... .......... .......... .......... .......... .......... 1024 TGTTGAGTTT TTGGGAGGCT GCAGATTTTT TGTGTCCATT ATTGATGACT ACTCAAGGAT 100759 .......... .......... .......... .......... .......... .......... 1024 GACTTGGGTG TACATGATGA AGCATAAAAG TGAAGCCTTC CAGAAGTTCA AGGAGTGGAA 100819 .......... .......... .......... .......... .......... .......... 1024 AATTTTGATG GAAAATCAAA CAGGGAAGAA GATCAAGAGG TTGCGAACTG ATAATGGGCT 100879 .......... .......... .......... .......... .......... .......... 1024 GGAATTCTGT TGGTCTGAAT TTGATCAATT CTGTAAGGAT GAAGGGATTG CTCGACATCG 100939 .......... .......... .......... .......... .......... .......... 1024 CACAGTCAGA AATACACCAC AGCAGAACGG TGTAGCTGAG CGGATGAATC AAACACTTCT 100999 .......... .......... .......... .......... .......... .......... 1024 GGAGAGAGCA AGGTGCATGC TCTCTAATGC TGGGCTAGAT AGAAGATTCT GGGCAGAAGC 101059 .......... .......... .......... .......... .......... .......... 1024 GGTTAGTACA GCTTGCTACT TGATTAACCG CGGACCACAT ACAGGCATAC AGTGCAAGAC 101119 .......... .......... .......... .......... .......... .......... 1024 ACCTATGGAG ATGTGGTCAG GAAAAGCTGC TGATTATTCA AATCTGAAAG CTTTTGGTTG 101179 .......... .......... .......... .......... .......... .......... 1024 TACGGCTTAC TATCACGTCA ATGAAGGTAA GTTAGAACCA AGAGCTAAAA AGGGAGTATT 101239 .......... .......... .......... .......... .......... .......... 1024 TGTGGGCTAC GGAGATGGAG TGAAAGGTTT CAGAATCTGG TCTCCAGCAG AAAAGAGGGT 101299 .......... .......... .......... .......... .......... .......... 1024 TATTATGAGC AGGAACGTTG TCTTTGATGA AAGTTCTCTG CTTAGAACCA TTGTGAAGCC 101359 .......... .......... .......... .......... .......... .......... 1024 TACAACTACG TCAGAAACTG GGAGTCTTGA CAAACAGGTG GAGTTTCAAG TCATTCAGAA 101419 .......... .......... .......... .......... .......... .......... 1024 CGAGAGAGAT TTAAAGGAAC CTGAAGAGGA GGATCAAGAG CCACAGACAG AAACTGATAT 101479 | | | || ||| | | | | | ||| | | || | .......... .......... CCGGGGGGGC GGA-GACGCG GCGCCGACGG TATACAATGT 1063 TCCAGAATCT ATGCCATCAG ATATCCATCA GAGTATAGCT CAAGATCGGC CAAGGAGGGT 101539 | | || | ||| | | TGTTGTAT-T GGGCCCTTA- .......... .......... .......... .......... 1081 TGGAGTTCGG CCACCTACGA GGTATGGTTT TGAGGACATG GTGGGTTATG CACTGCAGGT 101599 .......... .......... .......... .......... .......... .......... 1081 TGCTGAAGAG GTAGATACAT CTGAGCCGTC TACTTACAAA GAAGCCATTT TAAGTTCTGA 101659 .......... .......... .......... .......... .......... .......... 1081 TTCTGAAAAA TGGTTTGCCG CTATGGGAGA TGAGATGGAG TCCCTACACA AGAATCAGAC 101719 .......... .......... .......... .......... .......... .......... 1081 ATGGGATCTG GTCATACAGC CTTCGGGGAG AAAGATTATT ACTTGCAAAT GGGTTTTCAA 101779 .......... .......... .......... .......... .......... .......... 1081 GAAGAAGGAA GGGATATCAC CAGCAGAAGG AGTCAAGTAT AAAGCCAGGG TTGTTGCCAG 101839 .......... .......... .......... .......... .......... .......... 1081 AGGTTTCAAC CAAAGAGAGG GAGTGGACTA CAATGAGATC TTCTCACCAG TGGTCAGACA 101899 .......... .......... .......... .......... .......... .......... 1081 TACTTCCATC CGAGTGTTAC TAGCGATAGT TGCACATCAG AATCTGGAGC TTGAACAACT 101959 .......... .......... .......... .......... .......... .......... 1081 TGATGTGAAG ACAGCGTTTC TACATGGAGA GTTGGAGGAA GAGATATACA TGACTCAGCC 102019 .......... .......... .......... .......... .......... .......... 1081 GGATGGTTTC CAAGTTCCAG GGAAGGAAAA TCACGTCTGC AAGTTGAAGA AGTCCTTATA 102079 .......... .......... .......... .......... .......... .......... 1081 TGGACTTAAG CAGTCTCCAA GGCAGTGGTA TAAAAGGTTT GACAGCTATA TGGTGAAGTT 102139 .......... .......... .......... .......... .......... .......... 1081 GGGCTATACT CGGAGCTCAT ATGATTGTTG TGTCTACTAC AATAGGCTCA ATGATGATTC 102199 .......... .......... .......... .......... .......... .......... 1081 ATTCATCTAT CTGGTGCTTT ATGTAGATGA TATGTTGATA GCTGCAAAGA AGAAGTATGA 102259 || | ||||||| ||| | .......... .......... ......ATTT TCTGTTGAT- TCTGTAT... .......... 1101 CATTCAAAAG CTGAAGGGTT TACTTAGTGC TGAGTTTGAG ATGAAGGATC TGGGAGCCGC 102319 .......... .......... .......... .......... .......... .......... 1101 TCGGAAGATT TTAGGGATGG AGATCATTAG AGACAGAGAG AGAAGGAAAC TTTTCTTGTC 102379 .......... .......... .......... .......... .......... .......... 1101 ACAGAGAAGC TACATTCAGA AGGTCTTGGC GAGGTTTGGC ATGTCTTCAT CTAAGCCCAT 102439 .......... .......... .......... .......... .......... .......... 1101 TGATACCCCC AGTGCTGCCA ATATCCATCT CACTGCCATG TTCGCTCCAC AGTCAGAAGA 102499 .......... .......... .......... .......... .......... .......... 1101 AGAGAAGGAG TATATGTCAC GAGTCCCTTA TGCCAGTGCC GTAGGAAGTT TAATGTATGC 102559 .......... .......... .......... .......... .......... .......... 1101 TATGGTCTGT ACAAGGCCAG ATTTAGCACA TGCAGTCAGT GTAGTGAGCA GATTCATGGA 102619 .......... .......... .......... .......... .......... .......... 1101 ACAACCAGGG AGAGAACATT GGCAGGCTGT GAAGAGAATT TTCTGGTACC TTAGAGGTAC 102679 .......... .......... .......... .......... .......... .......... 1101 ATCTGACGTT GGTCTCATTT ATGGAGGTGA TACTCAGTGC TTGGTTACTG GCTATTCTGA 102739 .......... .......... .......... .......... .......... .......... 1101 TTCAGACTAT GCTGGAGATG TTGACACAAG AAGATCGATG ACTGGCTATG TGTTTACCCT 102799 .......... .......... .......... .......... .......... .......... 1101 TGGAGGATCT GTCGTCAGTT GGAAGGCAAC TTTGCAACCT ACAGTGACTT TGTCTACTAC 102859 .......... .......... .......... .......... .......... .......... 1101 GGAAGCGGAG TACATGGCCT TGACAGAGGC TGCAAAAGAA GGGATTTGGC TGAAAGGGCT 102919 .......... .......... .......... .......... .......... .......... 1101 GGTTAGTGAT CTTGGTCTGC ATCATGATCA GGCTACGGTG TATTGTGACA GTTTGAGCGC 102979 .......... .......... .......... .......... .......... .......... 1101 AATTTGTCTA GCCAAGGATC AAGTCCATCA TGAGAGAACC AAGCATATCG ACGTAAGGTA 103039 .......... .......... .......... .......... .......... .......... 1101 TCATTTTCTG AGAAGTGAGA AGAGAATCAA GGTGAAGAAA GTAGGAACTG CTGATAATCC 103099 .......... .......... .......... .......... .......... .......... 1101 TGCTGATATG TTCACAAAGC CGGTTCCACA GAGCAAGTTT CAACACTGTT TGGACTTGCT 103159 .......... .......... .......... .......... .......... .......... 1101 CAACATCAGA AGCTGTTAAT TGCCCTGCGG GGCAACTCTG AGGAAGAGGG GGAGGCCTGG 103219 .......... .......... .......... .......... .......... .......... 1101 CACTATCATA GTGCGTCTGA AGAATCTGTT CGGAGAATTC AAGTCAAGGT GGAGATTTGT 103279 .......... .......... .......... .......... .......... .......... 1101 TGAATGCCTT GAATCGGACC CGCTACAAAC AGAAAGGACG GGCCCAAGCC TGTTAGGGCG 103339 | | |||||||||| | |||||||| .......... .......... .......... ......GTTG GGCCCAAGCC TTTTAGGGCG 1125 TAGCTTAGCA CTATATATAG ACGCTATGGG AAACCCTATT CTGTAATTCT GTTTTTGCCT 103399 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TAGCTTAGCA CTATATATAG ACGCTATGGC AAACCCTATT CTGTAATTCT GTTTTTGCCT 1185 CTCCATAATA AAACTGCTCC CTCTCTTCCC ATGGACGTAG CCAATTTATT GGTGAACCAC 103459 |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCCATAATA AAATTGCTCC CTCTCTTCCC GTGGACGTAG CCAATTTATT GGTGAACCAC 1245 GTAAA-CTGT TGTCTTGTTT TTCGC-ATT- TATATTTTCT CGTATTATCT CAAATTCCGC 103516 ||||| |||| |||||||||| ||||| || |||||||||| |||||||||| |||||| ||| GTAAATCTGT TGTCTTGTTT TTCGCGTTTA TATATTTTCT CGTATTATCT CAAATTTCGC 1305 ACAACAACAG CAATTAAGCA CCAGCACATG AAGCAACCGT TCATTGGTTG AGATTTGAGC 103576 |||||| ||| ACAACACTCT TAAT...... .......... .......... .......... .......... 1319 GTCAGTGCCA TTTCTTTTCC ATTCTTTGTT TTTGGTAGTA ACTATGATAT TGCCATTGTT 103636 .......... .......... .......... .......... .......... .......... 1319 TAGAACTTCA ATGATCTGCT GATATTGTGG AGCATGCAAA ACTAAAAGCT ATCAAGTAAA 103696 .......... .......... .......... .......... .......... .......... 1319 AGTAATCGTA ATGTGCTAGT TCATATAAGA CCATCTAAAA GCTATCAATT AAAACTTATC 103756 .......... .......... .......... .......... .......... .......... 1319 GCAGTGTGTA CATATATTTG CAATTAGCAG CAAAACAGAG CAAAAACAAA GCATTAAGAT 103816 .......... .......... .......... .......... .......... .......... 1319 CAGAAAAAGT GATTAACCTT AAGGAATCAA CCTCGCCCAT TGTCACCTAC AACAAAGTTA 103876 .......... .......... .......... .......... .......... .......... 1319 AACACCTGCA GTGTTTAAAA ACCACAAACA ACATTTAACT TGTTAAAAGT GAATGATTAA 103936 .......... .......... .......... .......... .......... .......... 1319 AAGTAAAAAA AAAAAACAAT TGAGAAAGAT AAAAAGGAAG AGAAGACGGC ATAAACTACA 103996 .......... .......... .......... .......... .......... .......... 1319 ATATATGTTT TCCATCACAG GTTATTCATA TCATCCCCGA TAAAACTTTC TACTTGAGCA 104056 .......... .......... .......... .......... .......... .......... 1319 CTACCAAAAA ACTATTGAGG ATGTAGGACC TTGGATGGTT GAGTATGGTG ACAGAAAACA 104116 .......... .......... .......... .......... .......... .......... 1319 AAACATGGAA CAGGATCAAT CTAAGCCTTA TCATCCTTAC GATCAGAATG GACTCTTTGA 104176 .......... .......... .......... .......... .......... .......... 1319 TTTTCCTCTC CTTCGTTCAT GATCACACTT CTGTTAAAAA TTCACCTTAA CTATTATGCA 104236 .......... .......... .......... .......... .......... .......... 1319 ACAAAAACAA AGCGCCAAAA ATATATACCT GTATTTTATC CGGGCACGGA AAAGAGAAAC 104296 .......... .......... .......... .......... .......... .......... 1319 AGTTAAATGG ACAATAACAT GTCATTTGAG ATAATTATAC AGATGATGAG AGTAGCTGAA 104356 .......... .......... .......... .......... .......... .......... 1319 AAGATTTTGG AAGAAGGATA CTGAAAATTC ATGACCGCTG CAGAAGAGAA GTCGAGCAGC 104416 .......... .......... .......... .......... .......... .......... 1319 AACTACAAGA CTGTTACAGC GATCTGGCGT TTCAGAACAA TTAATTTAGG GCTATCAGCA 104476 ||| | |||||| | .......... .......... .......... .......... ...ATTCATA ACTATCATCT 1336 AATTAAATTT ATAATAAATT AATATTTAAC TAATATTTTT AATAAATTAA TATATAAATT 104536 | | ||| |||| ||||||||| | | | ||| || | || | TTTCATATTC ATAACCTCCA AATATTTAAA TTA-AACTTT AAGATATCTT TTG....... 1388 ATACTGTAGG ATTAAAACGG TAAATCAACT TTGGGATTAG GAGGTTCATG CCTATAATAA 104596 .......... .......... .......... .......... .......... .......... 1388 TATATGATAT GATGATGATA ATATCGGGCA GAAAGATATG TATTTGTATT TTAATATCCC 104656 .......... .......... .......... .......... .......... .......... 1388 ATCTCTCACA ACCACAATAA TAACTTTACA AGAAAAGAAG TGGAAAAAAT AAACTTGCCA 104716 .......... .......... .......... .......... .......... .......... 1388 TCAAATAATA AATTCAAATT AGTGAATTAG AAAAAACATG TGAGAAGATC AAATATGTCC 104776 .......... .......... .......... .......... .......... .......... 1388 CTTCATTGAT TTTTTAAAAA AATGTTATTT GTAAGTCATT TGTTTAACCA AAATAAAGAC 104836 .......... .......... .......... .......... .......... .......... 1388 ATATCAAACC CTTTTTCTCA AAACAAAATA AAATTACATT CGTAATAGTA AACTCAACAT 104896 .......... .......... .......... .......... .......... .......... 1388 ATGGCTGAAG CTGTCGTTAA AGTTCTCATA GACAATCTCA CTTCTTGTAT TGATTTTCGG 104956 .......... .......... .......... .......... .......... .......... 1388 GAAACAGGTA CTCATTGTTA ATGTTTGTAA TTATTGGCCA ACAGTATCAC TTTCTGAATG 105016 ||| || || .......GTA TTCCTT.... .......... .......... .......... .......... 1397 AATCTTGTGG CACAGGGAAA AATAACAAAT ATAACGCCAT TACCTGTCTT CTGGTGGTTG 105076 .......... .......... .......... .......... .......... .......... 1397 TGCTGCTGCA ATGGAGTAAC ATGGAGATTA TAATTGAGAG TAAAACCTTC TATTGCTATT 105136 .......... .......... .......... .......... .......... .......... 1397 AAATAGAATC TGCAATTAAA AAAAAAAATT ACATAGATAC AATATGGAAC TTCAATATGT 105196 .......... .......... .......... .......... .......... .......... 1397 ACAACTTGGA AACCCTTTCA ATGCTTGAGG TCTCAGTTTT TACCACATTC AGATACAAAA 105256 .......... .......... .......... .......... .......... .......... 1397 ATGTAGTAAC AATGGCAATT GTGCGCGATT CTAAAATGGC AAAAAAATAA TGCCGACTTA 105316 .......... .......... .......... .......... .......... .......... 1397 ACTATGGAAA TTATGTACAG ATATAACTAA CTATAAAACT TAAATCGTAC AGTGGCATAT 105376 .......... .......... .......... .......... .......... .......... 1397 CAAAAGAGCC TTCTTAGGCT CTGCTGCTAT CATCAAAAAA AGTTTTTGAC TGATTCTGGC 105436 .......... .......... .......... .......... .......... .......... 1397 AGTTCATGGA GTAGTATAAG CTTCGGACGA TTTGAACTGA TTCACACAGC ATGTAACTGA 105496 .......... .......... .......... .......... .......... .......... 1397 TTTAAAAAAT TCAGTTTTAC TCTATCAGAG TCACCAACTC CTTTCTTCCC AGAAGAACTA 105556 .......... .......... .......... .......... .......... .......... 1397 GCAGCCACTT GTTCCTTCAA AGCTTCCTTC TCCAGTTTCT TCTTTTCAGC ATCAGCTGCT 105616 .......... .......... .......... .......... .......... .......... 1397 TGTTCATTCT CATCGCGTGA TTTTTTAAAC ATCTTCATGA ACACCACCAA AATTTGTGTC 105676 .......... .......... .......... .......... .......... .......... 1397 ACTGCATCCA GAAAGTAAGG AAATGAAAAC TGACAAAGTT TGTCACAAAC ATTGTCCGGT 105736 .......... .......... .......... .......... .......... .......... 1397 TAAAGAGTTG GTGAGGAAAA ATCTGTTGAA GCAATTCTCA CACCGGTTAA AACAAGATCT 105796 .......... .......... .......... .......... .......... .......... 1397 CAAGGACAAA CGCAATTCGA GAAATCTAGC CGATGGCTAT ATGCACTCAA CAAAAGCTAA 105856 .......... .......... .......... .......... .......... .......... 1397 AAAGGCCATA AATGTTGCAT CCCATAATCT TCACATAAAG ATAGACAACT AAAAAGATTG 105916 .......... .......... .......... .......... .......... .......... 1397 CATCACTGAT AAACGCTTCT GGAATAGCTA TATTACCAAG ACTGTTTGTT AAACAGTCAA 105976 .......... .......... .......... .......... .......... .......... 1397 ACGACTGTAG TTTTTTCTTT TCCAGATGAC TGATAAGTGA TAATACAGCA AGAAAAATAA 106036 .......... .......... .......... .......... .......... .......... 1397 TGTATGTATC TCTAACCTTG CTCAAAGGGG CATCGAGCTG GATCTTCGCC AAAATACAGG 106096 .......... .......... .......... .......... .......... .......... 1397 GATAGGGAGT CTGCACTCCT TCCCTGCAGA TTTACAAGAT AGAAAAACAA TCAACAAACT 106156 .......... .......... .......... .......... .......... .......... 1397 TGGCGTGGCT TATACATTGA GGAGGCTTTA AAATATGGCA TAATGGATGC AAGAAACTCA 106216 .......... .......... .......... .......... .......... .......... 1397 CCACTTCAAT ATAAAGAGTA GTGAGAGACT TGACTTCAGC CTCAGCAGTA TCAAGGAAAT 106276 .......... .......... .......... .......... .......... .......... 1397 TCTTTAACAC CTGAGAAGGA ATGCACGAGT CACAAACCGC ATATTTCAGA TGTTTATAAC 106336 .......... .......... .......... .......... .......... .......... 1397 AAAATTATGT GTACACCAAA TCACAGACAT CGCAATCAAG TTTGACTGCA TCACCCGACT 106396 .......... .......... .......... .......... .......... .......... 1397 CCACTCTAAA ACCATGTCCA ACACAAACCA AATTGGGAGT TTTCCCAGCA CAAGCCTTTT 106456 .......... .......... .......... .......... .......... .......... 1397 TCACTTGACC TTGTTAAGAA CAAAAATGTC ATCCATTGGG GACACCTATC ACTCTTCTAA 106516 .......... .......... .......... .......... .......... .......... 1397 AACAGTGGTA CACTGCTTCC TTATTTTGTT TTCTCAAACT ATCTAGAATA AAGCTTTTTG 106576 .......... .......... .......... .......... .......... .......... 1397 ATAGTAAATA GGGATCCTAG TAATGTATAA TGAAGGAAAG CTGGGGAAAG AGGAATCCGC 106636 || ||| | |||||| .......... .CTATTCTA- T-TTGTATA. .......... .......... .......... 1413 ACAATGCCAT TCATTTCATA TCTGGCGTAA GAAAATCTAG AGAATTTGAT AATACATTTA 106696 .......... .......... .......... .......... .......... .......... 1413 GGGGTCGTTT GGTAGAACGT ATTAAGAAAA ATAATGGATG CATTAGCCTT GTTTATTGCT 106756 .......... .......... .......... .......... .......... .......... 1413 AGTACCATGT TTGGTACTCT TTTCTAAACT ATGTACAACT AGTGCTTGCA TTAGTTATAC 106816 .......... .......... .......... .......... .......... .......... 1413 ACTCTATCGT TTATTAAAGT AGATTACCAT ATGACCTTCA AAATTTAAAA TTTAAAACTA 106876 .......... .......... .......... .......... .......... .......... 1413 AAAAGAAACA TTATCTTGGA AGTACAAGTA ACTCATTTTG GTATGTAGGA ATAATTCACA 106936 .......... .......... .......... .......... .......... .......... 1413 TGCTACCATT CTCTTTTCTC ACCTTCTGAA ATCCTGAAGA TATTGTACCA TCGTTGTCGG 106996 .......... .......... .......... .......... .......... .......... 1413 ATGCAGTAAG TTCTTGTTCA ACTTTCTCAA GACCTTTACT CACTGCTTGC ATTTCTTCAG 107056 .......... .......... .......... .......... .......... .......... 1413 CCAAAGACTT CAGTTGAATC TAACCATATA ATATGAAGTA AACAAACATT TCAGTTCACC 107116 .......... .......... .......... .......... .......... .......... 1413 ATAATACCAG TAGTACTGCA AAGGAAGACC ATAATAAATA GCAAGGGTAC CTTAGAAGCA 107176 .......... .......... .......... .......... .......... .......... 1413 GCTTCCAAGT GAAGAAGATC CTTGTCAAAA TCAAGCAACT CTGGCATTTT CTCAGCAAGG 107236 .......... .......... .......... .......... .......... .......... 1413 AGCTGACAAA AAAACGAATT TACACATTTG GCATCACATT GGGAAGTGCA AACATATATA 107296 .......... .......... .......... .......... .......... .......... 1413 TGCCGAAGAG TAAAGACTAA GGCTGGGCTG GTCAATCCAG CTATAGTTGA TAGCTAAAGG 107356 .......... .......... .......... .......... .......... .......... 1413 CTATCAACTA AAGTTCACTG ATAGTTGGGC AAAAGAACAG CATAAACGTA GAATACTGAA 107416 .......... .......... .......... .......... .......... .......... 1413 AGTAGAAAAT ATATACAAAA ACATTTAGTT CTCTACAGAA CTCAACCTTC TATAATACAG 107476 || |||| |||| | || || .......... .......... .......... ........AA TTCAA-CTTC TTTATCTCAT 1434 GAA 107479 ||| GAA 1437 hqPGS_C08SLe0082C24.1+_SGN-U314435+ (98960 99019,100326 100371,101440 101499,102226 102246,103316 103530,104460 104529,104964 104972,106588 106605,107455 107479) ******************************************************************************** EST sequence 19 +strand 822 n (File: SGN-U339741+) 1 TTGAAGACTT TGCTGGAGCT CCACCGCGGT GGCGGCCGCT CTAGAACTAG TGGATCCCCC 61 GGGCTGCAGG TTTTTTTTTT GTTTTACTGA AATTTTAGTT CAATTGATTG ACTATCTGAA 121 TTTTCACGTC TGGTTGGATT TTTCGTGCCG AGTAGGAAGT TATTTCATTA ATTTTAAATA 181 ATAAATTAAA GAGATCGAAG TAAATAGATG AACTGAAAGA GCATGATGTT GTTATCATGT 241 GTTGGTTTCC TTTGTTGGTT CTTAATCAGA TATTTCGAGG TTTGAGTTTT TAGAAACAAA 301 AAGAATCTTT GATGCCTGAC ATGCTGATCA CTGCTAAAAA TTATTATATT CCCATTGAAA 361 AATATTTAGT GGTTGTTTTC ACTAATGTTT TGATTGAATT GGTGGATTAA GAAAAAATAG 421 TCCAATAGTA ATGGTTGTGC TGAATGCCTT GAATCTGTCC CAATCCTGTT AGGGCGTAGC 481 TTAGCACTAT ATATAGACGC TATGGGAAAC CCTATTCTGG AATTCTGATC TTGCCTCTGC 541 ATAATAAAAT TGCTACCTCT CTTCCCTTGG ACGGAACCAA TCTATTGGTG AACCACGTAG 601 ATTATGCAGT TTTGTTTGTC GCCGATATAT TATGCTGTTT ATCCTAAATT ACATACCAAA 661 AGGTTTATAT GAAAAAATAG GATTTCGATT TTATTTAGAT GAAATAATTT ACACTCATAC 721 TTTACTTGAT AATTGGTTCC TGGAAAATAA ACGTAAAATC TCGTTTTTAT CACAAATTTA 781 TGGCATCTCT TTGCAATTCC CACTACCTCA TTATACTTCT TA Predicted gene structure (within gDNA segment 97488 to 107022): Exon 1 98960 98983 ( 24 n); cDNA 438 461 ( 24 n); score: 0.875 Intron 1 98984 103324 (4341 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 2 103325 103514 ( 190 n); cDNA 462 652 ( 191 n); score: 0.826 Intron 2 103515 105248 (1734 n); Pd: 0.000 (s: 0.68), Pa: 0.499 (s: 0) Exon 3 105249 105260 ( 12 n); cDNA 653 664 ( 12 n); score: 0.833 MATCH C08SLe0082C24.1+ SGN-U339741+ 0.826 226 0.275 C PGS_C08SLe0082C24.1+_SGN-U339741+ (98960 98983,103325 103514,105249 105260) Alignment (genomic DNA sequence = upper lines): TGTTGAATGC CTTGAATCGG ACCCGCTACA AACAGAAAGG ATGGGCCCAA GCCTGTTAGG 99019 || ||||||| |||||||| | ||| TGCTGAATGC CTTGAATCTG TCCC...... .......... .......... .......... 461 GCGTAGCTTA GCACTATATA TAGACGCTAT GGGAAATCCT ATTCTGTAAT TCTGTTTTTG 99079 .......... .......... .......... .......... .......... .......... 461 CCTCTCCATA ATAAAACTGC TCCCTCTCTT CCCGTGGACG TAGCCAATTT ATTGGTGAAC 99139 .......... .......... .......... .......... .......... .......... 461 CACGTAAACT GTTGTCTTGT TTTTCGCATT TATATTTTCT CGTATTATCT CAAATTCCGC 99199 .......... .......... .......... .......... .......... .......... 461 ACAACAAATT GGTATCAGAG CCTCTCGGTT AATCGATGTT CTTGGAGAAT TTGAGATGTC 99259 .......... .......... .......... .......... .......... .......... 461 TGCTTTGAAC GTGAAAATCG ACAAATTCAC AGGGAGGAAC GGTTTCAGTT TATGGCAGAT 99319 .......... .......... .......... .......... .......... .......... 461 CAAGATGCGG GCTTTGTTGA AACAGCAAGG CTTCTGGGCG CCGTTGTCGA AAGACAAGAA 99379 .......... .......... .......... .......... .......... .......... 461 CGCCGTCGTT ACTCCTGAGA TGGCGATTCT GGAGGAAAAG GCGCACTCGA CGATCATGCT 99439 .......... .......... .......... .......... .......... .......... 461 GTGTCTCGCG GATGACGTCA TCACGGAGGT CTCGGATGAA GAGACTGCTG CTGGTCTGTG 99499 .......... .......... .......... .......... .......... .......... 461 GTTGAAGCTG GAGAGTTTGT ACATGACAAA ATCTCTAACC AACAAGCTGC TTCTGAAACA 99559 .......... .......... .......... .......... .......... .......... 461 ACGTCTATTC GGTTTACGAA TGGCTGAAGG TACACAACTC AGGGAACACT TAGAGCAATT 99619 .......... .......... .......... .......... .......... .......... 461 GAATATTTTG CTATTAGAAT TGCGTAATAT CGATGTGAAG ATCGAGGATG AAGATGCTGC 99679 .......... .......... .......... .......... .......... .......... 461 CCTGATTCTG TTAGTATCTC TCCCAATGTC GTTCGAGAAT TTTGTTCAAT CGTTCATTGT 99739 .......... .......... .......... .......... .......... .......... 461 TGGGAAAGAT ACTGTGTCAC TGGAAGAAGT CAGATCGGCC CTTCATAGCA GGGAATTACG 99799 .......... .......... .......... .......... .......... .......... 461 GCATAAGGCT AACGGCACAA GTACGGACAT ACAGCCTTCC GGTCTGTTCA CCAGTAGCGG 99859 .......... .......... .......... .......... .......... .......... 461 AAAGGGAAGG AAAAATGGCG GAAAGAAAAA TAAGCCGATG TCGAAGGGTG CAAAGCCGGA 99919 .......... .......... .......... .......... .......... .......... 461 TGATGTTTGT AATTACTGCA AGGAGAAGGG ACATTGGAAA TTTGATTGTC CGAAGAAGAA 99979 .......... .......... .......... .......... .......... .......... 461 GAAGCAATCG GAAAAACAAT CAGTGTCTGC TGTTGTTGCT GAAGAAGACA CCAATTCTGA 100039 .......... .......... .......... .......... .......... .......... 461 AGAAGATATT GCCCTAGTTG CGGATGAGCA CACTCATTAT TCAGATGTGT GGATTCTTGA 100099 .......... .......... .......... .......... .......... .......... 461 TTCTGGGGCA TCCTATCACA TCTGTCCTAG GAGAGAGTGG TTCACGACTT ATGAGCAGGT 100159 .......... .......... .......... .......... .......... .......... 461 AGACGGAGGC AGCATCTCGA TGGCCAACAG TTCTGTCTGC AAGGTGGTTG GGACAGGCTC 100219 .......... .......... .......... .......... .......... .......... 461 GATCAAGATA AGGACACATG ACGGTAGCTT CTGCACATTG AACGAGGTCA GGCACGTTCC 100279 .......... .......... .......... .......... .......... .......... 461 ATTGATGACG AAAAATCTGA TATCTCTCAG TCTTTTGGAC AGCAAGGGAT TCAGCTGGTC 100339 .......... .......... .......... .......... .......... .......... 461 GGGAAAAGAT GGAGTCTTGC GGGTCTGGAA GGGTTCAAAT TTGATTCTGA AAGGTGTCAT 100399 .......... .......... .......... .......... .......... .......... 461 GCGTGGTACT TTGTATTTTC TACAAGGTTC CACGGTTACA GGTTCAGCCC ATGTTGCATC 100459 .......... .......... .......... .......... .......... .......... 461 GTCAGAATTT CACCAGAAGG ATATGACTAA GTTATGGCAC ATGAGACTTG GTCATATGGG 100519 .......... .......... .......... .......... .......... .......... 461 TGAAAGAGGG ATGCAAATTC TGTCAAAGGA GGATTTACTT GCTGGTCATA AGGTTAAGAG 100579 .......... .......... .......... .......... .......... .......... 461 CCTAGAGTTT TGTGAACATT GTGTTTTTGG AAAACTACAT CGCAACAAGT TTCCAAAGGC 100639 .......... .......... .......... .......... .......... .......... 461 CATTCATAGA ACAAAAGGCA CACTTGATTA TATCCATTCT GATTGCTGGG GTTCATGCCG 100699 .......... .......... .......... .......... .......... .......... 461 TGTTGAGTTT TTGGGAGGCT GCAGATTTTT TGTGTCCATT ATTGATGACT ACTCAAGGAT 100759 .......... .......... .......... .......... .......... .......... 461 GACTTGGGTG TACATGATGA AGCATAAAAG TGAAGCCTTC CAGAAGTTCA AGGAGTGGAA 100819 .......... .......... .......... .......... .......... .......... 461 AATTTTGATG GAAAATCAAA CAGGGAAGAA GATCAAGAGG TTGCGAACTG ATAATGGGCT 100879 .......... .......... .......... .......... .......... .......... 461 GGAATTCTGT TGGTCTGAAT TTGATCAATT CTGTAAGGAT GAAGGGATTG CTCGACATCG 100939 .......... .......... .......... .......... .......... .......... 461 CACAGTCAGA AATACACCAC AGCAGAACGG TGTAGCTGAG CGGATGAATC AAACACTTCT 100999 .......... .......... .......... .......... .......... .......... 461 GGAGAGAGCA AGGTGCATGC TCTCTAATGC TGGGCTAGAT AGAAGATTCT GGGCAGAAGC 101059 .......... .......... .......... .......... .......... .......... 461 GGTTAGTACA GCTTGCTACT TGATTAACCG CGGACCACAT ACAGGCATAC AGTGCAAGAC 101119 .......... .......... .......... .......... .......... .......... 461 ACCTATGGAG ATGTGGTCAG GAAAAGCTGC TGATTATTCA AATCTGAAAG CTTTTGGTTG 101179 .......... .......... .......... .......... .......... .......... 461 TACGGCTTAC TATCACGTCA ATGAAGGTAA GTTAGAACCA AGAGCTAAAA AGGGAGTATT 101239 .......... .......... .......... .......... .......... .......... 461 TGTGGGCTAC GGAGATGGAG TGAAAGGTTT CAGAATCTGG TCTCCAGCAG AAAAGAGGGT 101299 .......... .......... .......... .......... .......... .......... 461 TATTATGAGC AGGAACGTTG TCTTTGATGA AAGTTCTCTG CTTAGAACCA TTGTGAAGCC 101359 .......... .......... .......... .......... .......... .......... 461 TACAACTACG TCAGAAACTG GGAGTCTTGA CAAACAGGTG GAGTTTCAAG TCATTCAGAA 101419 .......... .......... .......... .......... .......... .......... 461 CGAGAGAGAT TTAAAGGAAC CTGAAGAGGA GGATCAAGAG CCACAGACAG AAACTGATAT 101479 .......... .......... .......... .......... .......... .......... 461 TCCAGAATCT ATGCCATCAG ATATCCATCA GAGTATAGCT CAAGATCGGC CAAGGAGGGT 101539 .......... .......... .......... .......... .......... .......... 461 TGGAGTTCGG CCACCTACGA GGTATGGTTT TGAGGACATG GTGGGTTATG CACTGCAGGT 101599 .......... .......... .......... .......... .......... .......... 461 TGCTGAAGAG GTAGATACAT CTGAGCCGTC TACTTACAAA GAAGCCATTT TAAGTTCTGA 101659 .......... .......... .......... .......... .......... .......... 461 TTCTGAAAAA TGGTTTGCCG CTATGGGAGA TGAGATGGAG TCCCTACACA AGAATCAGAC 101719 .......... .......... .......... .......... .......... .......... 461 ATGGGATCTG GTCATACAGC CTTCGGGGAG AAAGATTATT ACTTGCAAAT GGGTTTTCAA 101779 .......... .......... .......... .......... .......... .......... 461 GAAGAAGGAA GGGATATCAC CAGCAGAAGG AGTCAAGTAT AAAGCCAGGG TTGTTGCCAG 101839 .......... .......... .......... .......... .......... .......... 461 AGGTTTCAAC CAAAGAGAGG GAGTGGACTA CAATGAGATC TTCTCACCAG TGGTCAGACA 101899 .......... .......... .......... .......... .......... .......... 461 TACTTCCATC CGAGTGTTAC TAGCGATAGT TGCACATCAG AATCTGGAGC TTGAACAACT 101959 .......... .......... .......... .......... .......... .......... 461 TGATGTGAAG ACAGCGTTTC TACATGGAGA GTTGGAGGAA GAGATATACA TGACTCAGCC 102019 .......... .......... .......... .......... .......... .......... 461 GGATGGTTTC CAAGTTCCAG GGAAGGAAAA TCACGTCTGC AAGTTGAAGA AGTCCTTATA 102079 .......... .......... .......... .......... .......... .......... 461 TGGACTTAAG CAGTCTCCAA GGCAGTGGTA TAAAAGGTTT GACAGCTATA TGGTGAAGTT 102139 .......... .......... .......... .......... .......... .......... 461 GGGCTATACT CGGAGCTCAT ATGATTGTTG TGTCTACTAC AATAGGCTCA ATGATGATTC 102199 .......... .......... .......... .......... .......... .......... 461 ATTCATCTAT CTGGTGCTTT ATGTAGATGA TATGTTGATA GCTGCAAAGA AGAAGTATGA 102259 .......... .......... .......... .......... .......... .......... 461 CATTCAAAAG CTGAAGGGTT TACTTAGTGC TGAGTTTGAG ATGAAGGATC TGGGAGCCGC 102319 .......... .......... .......... .......... .......... .......... 461 TCGGAAGATT TTAGGGATGG AGATCATTAG AGACAGAGAG AGAAGGAAAC TTTTCTTGTC 102379 .......... .......... .......... .......... .......... .......... 461 ACAGAGAAGC TACATTCAGA AGGTCTTGGC GAGGTTTGGC ATGTCTTCAT CTAAGCCCAT 102439 .......... .......... .......... .......... .......... .......... 461 TGATACCCCC AGTGCTGCCA ATATCCATCT CACTGCCATG TTCGCTCCAC AGTCAGAAGA 102499 .......... .......... .......... .......... .......... .......... 461 AGAGAAGGAG TATATGTCAC GAGTCCCTTA TGCCAGTGCC GTAGGAAGTT TAATGTATGC 102559 .......... .......... .......... .......... .......... .......... 461 TATGGTCTGT ACAAGGCCAG ATTTAGCACA TGCAGTCAGT GTAGTGAGCA GATTCATGGA 102619 .......... .......... .......... .......... .......... .......... 461 ACAACCAGGG AGAGAACATT GGCAGGCTGT GAAGAGAATT TTCTGGTACC TTAGAGGTAC 102679 .......... .......... .......... .......... .......... .......... 461 ATCTGACGTT GGTCTCATTT ATGGAGGTGA TACTCAGTGC TTGGTTACTG GCTATTCTGA 102739 .......... .......... .......... .......... .......... .......... 461 TTCAGACTAT GCTGGAGATG TTGACACAAG AAGATCGATG ACTGGCTATG TGTTTACCCT 102799 .......... .......... .......... .......... .......... .......... 461 TGGAGGATCT GTCGTCAGTT GGAAGGCAAC TTTGCAACCT ACAGTGACTT TGTCTACTAC 102859 .......... .......... .......... .......... .......... .......... 461 GGAAGCGGAG TACATGGCCT TGACAGAGGC TGCAAAAGAA GGGATTTGGC TGAAAGGGCT 102919 .......... .......... .......... .......... .......... .......... 461 GGTTAGTGAT CTTGGTCTGC ATCATGATCA GGCTACGGTG TATTGTGACA GTTTGAGCGC 102979 .......... .......... .......... .......... .......... .......... 461 AATTTGTCTA GCCAAGGATC AAGTCCATCA TGAGAGAACC AAGCATATCG ACGTAAGGTA 103039 .......... .......... .......... .......... .......... .......... 461 TCATTTTCTG AGAAGTGAGA AGAGAATCAA GGTGAAGAAA GTAGGAACTG CTGATAATCC 103099 .......... .......... .......... .......... .......... .......... 461 TGCTGATATG TTCACAAAGC CGGTTCCACA GAGCAAGTTT CAACACTGTT TGGACTTGCT 103159 .......... .......... .......... .......... .......... .......... 461 CAACATCAGA AGCTGTTAAT TGCCCTGCGG GGCAACTCTG AGGAAGAGGG GGAGGCCTGG 103219 .......... .......... .......... .......... .......... .......... 461 CACTATCATA GTGCGTCTGA AGAATCTGTT CGGAGAATTC AAGTCAAGGT GGAGATTTGT 103279 .......... .......... .......... .......... .......... .......... 461 TGAATGCCTT GAATCGGACC CGCTACAAAC AGAAAGGACG GGCCCAAGCC TGTTAGGGCG 103339 || || |||||||||| .......... .......... .......... .......... .....AATCC TGTTAGGGCG 476 TAGCTTAGCA CTATATATAG ACGCTATGGG AAACCCTATT CTGTAATTCT GTTTTTGCCT 103399 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| | | |||||| TAGCTTAGCA CTATATATAG ACGCTATGGG AAACCCTATT CTGGAATTCT GATCTTGCCT 536 CTCCATAATA AAACTGCTCC CTCTCTTCCC ATGGACGTAG CCAATTTATT GGTGAACCAC 103459 || ||||||| ||| |||| | |||||||||| |||||| | ||||| |||| |||||||||| CTGCATAATA AAATTGCTAC CTCTCTTCCC TTGGACGGAA CCAATCTATT GGTGAACCAC 596 GTA-A-ACTG TTGTCTTGTT TTTCGCATTT ATATTTTCTC GTATTATCTC AAATTCCGCA 103517 ||| | || || ||||| | |||| | ||||| | || ||||| ||||| | GTAGATTATG CAGTTTTGTT TGTCGCCGAT ATATTATGCT GT-TTATCCT AAATTAC... 652 CAACAACAGC AATTAAGCAC CAGCACATGA AGCAACCGTT CATTGGTTGA GATTTGAGCG 103577 .......... .......... .......... .......... .......... .......... 652 TCAGTGCCAT TTCTTTTCCA TTCTTTGTTT TTGGTAGTAA CTATGATATT GCCATTGTTT 103637 .......... .......... .......... .......... .......... .......... 652 AGAACTTCAA TGATCTGCTG ATATTGTGGA GCATGCAAAA CTAAAAGCTA TCAAGTAAAA 103697 .......... .......... .......... .......... .......... .......... 652 GTAATCGTAA TGTGCTAGTT CATATAAGAC CATCTAAAAG CTATCAATTA AAACTTATCG 103757 .......... .......... .......... .......... .......... .......... 652 CAGTGTGTAC ATATATTTGC AATTAGCAGC AAAACAGAGC AAAAACAAAG CATTAAGATC 103817 .......... .......... .......... .......... .......... .......... 652 AGAAAAAGTG ATTAACCTTA AGGAATCAAC CTCGCCCATT GTCACCTACA ACAAAGTTAA 103877 .......... .......... .......... .......... .......... .......... 652 ACACCTGCAG TGTTTAAAAA CCACAAACAA CATTTAACTT GTTAAAAGTG AATGATTAAA 103937 .......... .......... .......... .......... .......... .......... 652 AGTAAAAAAA AAAAACAATT GAGAAAGATA AAAAGGAAGA GAAGACGGCA TAAACTACAA 103997 .......... .......... .......... .......... .......... .......... 652 TATATGTTTT CCATCACAGG TTATTCATAT CATCCCCGAT AAAACTTTCT ACTTGAGCAC 104057 .......... .......... .......... .......... .......... .......... 652 TACCAAAAAA CTATTGAGGA TGTAGGACCT TGGATGGTTG AGTATGGTGA CAGAAAACAA 104117 .......... .......... .......... .......... .......... .......... 652 AACATGGAAC AGGATCAATC TAAGCCTTAT CATCCTTACG ATCAGAATGG ACTCTTTGAT 104177 .......... .......... .......... .......... .......... .......... 652 TTTCCTCTCC TTCGTTCATG ATCACACTTC TGTTAAAAAT TCACCTTAAC TATTATGCAA 104237 .......... .......... .......... .......... .......... .......... 652 CAAAAACAAA GCGCCAAAAA TATATACCTG TATTTTATCC GGGCACGGAA AAGAGAAACA 104297 .......... .......... .......... .......... .......... .......... 652 GTTAAATGGA CAATAACATG TCATTTGAGA TAATTATACA GATGATGAGA GTAGCTGAAA 104357 .......... .......... .......... .......... .......... .......... 652 AGATTTTGGA AGAAGGATAC TGAAAATTCA TGACCGCTGC AGAAGAGAAG TCGAGCAGCA 104417 .......... .......... .......... .......... .......... .......... 652 ACTACAAGAC TGTTACAGCG ATCTGGCGTT TCAGAACAAT TAATTTAGGG CTATCAGCAA 104477 .......... .......... .......... .......... .......... .......... 652 ATTAAATTTA TAATAAATTA ATATTTAACT AATATTTTTA ATAAATTAAT ATATAAATTA 104537 .......... .......... .......... .......... .......... .......... 652 TACTGTAGGA TTAAAACGGT AAATCAACTT TGGGATTAGG AGGTTCATGC CTATAATAAT 104597 .......... .......... .......... .......... .......... .......... 652 ATATGATATG ATGATGATAA TATCGGGCAG AAAGATATGT ATTTGTATTT TAATATCCCA 104657 .......... .......... .......... .......... .......... .......... 652 TCTCTCACAA CCACAATAAT AACTTTACAA GAAAAGAAGT GGAAAAAATA AACTTGCCAT 104717 .......... .......... .......... .......... .......... .......... 652 CAAATAATAA ATTCAAATTA GTGAATTAGA AAAAACATGT GAGAAGATCA AATATGTCCC 104777 .......... .......... .......... .......... .......... .......... 652 TTCATTGATT TTTTAAAAAA ATGTTATTTG TAAGTCATTT GTTTAACCAA AATAAAGACA 104837 .......... .......... .......... .......... .......... .......... 652 TATCAAACCC TTTTTCTCAA AACAAAATAA AATTACATTC GTAATAGTAA ACTCAACATA 104897 .......... .......... .......... .......... .......... .......... 652 TGGCTGAAGC TGTCGTTAAA GTTCTCATAG ACAATCTCAC TTCTTGTATT GATTTTCGGG 104957 .......... .......... .......... .......... .......... .......... 652 AAACAGGTAC TCATTGTTAA TGTTTGTAAT TATTGGCCAA CAGTATCACT TTCTGAATGA 105017 .......... .......... .......... .......... .......... .......... 652 ATCTTGTGGC ACAGGGAAAA ATAACAAATA TAACGCCATT ACCTGTCTTC TGGTGGTTGT 105077 .......... .......... .......... .......... .......... .......... 652 GCTGCTGCAA TGGAGTAACA TGGAGATTAT AATTGAGAGT AAAACCTTCT ATTGCTATTA 105137 .......... .......... .......... .......... .......... .......... 652 AATAGAATCT GCAATTAAAA AAAAAAATTA CATAGATACA ATATGGAACT TCAATATGTA 105197 .......... .......... .......... .......... .......... .......... 652 CAACTTGGAA ACCCTTTCAA TGCTTGAGGT CTCAGTTTTT ACCACATTCA GATACAAAAA 105257 |||| |||| .......... .......... .......... .......... .......... .ATACCAAAA 661 TGT 105260 || GGT 664 hqPGS_C08SLe0082C24.1+_SGN-U339741+ (98960 98983,103325 103514) ******************************************************************************** EST sequence 20 +strand 649 n (File: SGN-U330105+) 1 TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 61 CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 121 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 181 TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 241 AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 301 AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 361 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 421 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 481 CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 541 CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 601 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT Predicted gene structure (within gDNA segment 100640 to 102624): Exon 1 101366 102014 ( 649 n); cDNA 1 649 ( 649 n); score: 0.989 MATCH C08SLe0082C24.1+ SGN-U330105+ 0.989 649 1.000 C PGS_C08SLe0082C24.1+_SGN-U330105+ (101366 102014) Alignment (genomic DNA sequence = upper lines): TACGTCAGAA ACTGGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 101425 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 60 AGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACAGAAACTG ATATTCCAGA 101485 ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 120 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 101545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 180 TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 101605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 240 AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 101665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 300 AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 101725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 360 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 101785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 420 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGCC AGGGTTGTTG CCAGAGGTTT 101845 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| | |||||||| GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 480 CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 101905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 540 CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAC AACTTGATGT 101965 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 600 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 102014 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 649 hqPGS_C08SLe0082C24.1+_SGN-U330105+ (101366 102014) ******************************************************************************** EST sequence 10 +strand 946 n (File: SGN-U345812+) 1 TTTGGGGGCN GGAGCTCCAC CGCGGTGGCN GGCCGCTCTA GAACTAGTGG ATCCCCCGGG 61 CTGCAGGAAT TCGGCACGAG GGGTTTCCAA GTTCCAGGGA AGGAAAATCA CGTCTGCAAG 121 TTGAAGAAGT CCTTATATGG ACTTAAGCAG TCTCCAAGGC AGTGGTATAA AAGGTTTGAC 181 AGCTATATGG TGAAGTTGGG CTATACTCGG AGCTCATATG ATTGTTGTGT CTACTACAAT 241 AGGCTCAATG ATGATTCATT CATCTATCTG GTGCTTTATG TAGATGATAT GTTGATAGCT 301 GCAAAGAAGA AGTATGACAT TCAGAAGCTG AAGGGTTTAC TTAGTGCTGA GTTTGAGATG 361 AAGGATCTGG GAGCCGCTCG GAAGATTTTA GGGATGGAGA TCATTAGAGA CAGAGAGAGA 421 AGGAAACTTT TCTTGTCACA GAGAAGCTAC ATTCAGAAGG TCTTGGCGAG GTTTGGCATG 481 TCTTCATCTA AGCCCATTGA TACCCCCAGT GCTGCCAATA TCCATCTCAC TGCCATGTTC 541 GCTCCACAGT CAGAAGAAGA GAAGGAGTAT ATGTCACGAG TCCCTTATGC CAGTGCCGTA 601 AGAAGTTTGA TGTATGCTAT GGTCTGTACA AGGCCAGATT TAGCACATGC AGTCAGTGTA 661 GTGAGCAGAT TCATGGGACA ACCAGGGAGA GAACATTGGC AGGCTGTGAA GAGAATTTTC 721 CGGTACCTTA GAGGTACATC TGACGTTGGT CTCATTTATG GAGGTGATAC TCAGTGCTTG 781 GTTACTGGCT ATTCTGATTC AGACTATGCT GGAGATGTTG ACACAAGAAG ATCGATGACT 841 GGCTATGTGT TTACCCTGGG AGGATCTGTC GTCAGTTGGA AGGCAACTTT TGCACCTACA 901 GTGACTTTGT CTACTACGGA AGCCGAGTAC ATGGGCCTTG ACAGAA Predicted gene structure (within gDNA segment 100614 to 103705): Exon 1 102024 102886 ( 863 n); cDNA 82 945 ( 864 n); score: 0.986 MATCH C08SLe0082C24.1+ SGN-U345812+ 0.986 863 0.912 C PGS_C08SLe0082C24.1+_SGN-U345812+ (102024 102886) Alignment (genomic DNA sequence = upper lines): GGTTTCCAAG TTCCAGGGAA GGAAAATCAC GTCTGCAAGT TGAAGAAGTC CTTATATGGA 102083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCCAAG TTCCAGGGAA GGAAAATCAC GTCTGCAAGT TGAAGAAGTC CTTATATGGA 141 CTTAAGCAGT CTCCAAGGCA GTGGTATAAA AGGTTTGACA GCTATATGGT GAAGTTGGGC 102143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAGCAGT CTCCAAGGCA GTGGTATAAA AGGTTTGACA GCTATATGGT GAAGTTGGGC 201 TATACTCGGA GCTCATATGA TTGTTGTGTC TACTACAATA GGCTCAATGA TGATTCATTC 102203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACTCGGA GCTCATATGA TTGTTGTGTC TACTACAATA GGCTCAATGA TGATTCATTC 261 ATCTATCTGG TGCTTTATGT AGATGATATG TTGATAGCTG CAAAGAAGAA GTATGACATT 102263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATCTGG TGCTTTATGT AGATGATATG TTGATAGCTG CAAAGAAGAA GTATGACATT 321 CAAAAGCTGA AGGGTTTACT TAGTGCTGAG TTTGAGATGA AGGATCTGGG AGCCGCTCGG 102323 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAGCTGA AGGGTTTACT TAGTGCTGAG TTTGAGATGA AGGATCTGGG AGCCGCTCGG 381 AAGATTTTAG GGATGGAGAT CATTAGAGAC AGAGAGAGAA GGAAACTTTT CTTGTCACAG 102383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTTTAG GGATGGAGAT CATTAGAGAC AGAGAGAGAA GGAAACTTTT CTTGTCACAG 441 AGAAGCTACA TTCAGAAGGT CTTGGCGAGG TTTGGCATGT CTTCATCTAA GCCCATTGAT 102443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTACA TTCAGAAGGT CTTGGCGAGG TTTGGCATGT CTTCATCTAA GCCCATTGAT 501 ACCCCCAGTG CTGCCAATAT CCATCTCACT GCCATGTTCG CTCCACAGTC AGAAGAAGAG 102503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCCAGTG CTGCCAATAT CCATCTCACT GCCATGTTCG CTCCACAGTC AGAAGAAGAG 561 AAGGAGTATA TGTCACGAGT CCCTTATGCC AGTGCCGTAG GAAGTTTAAT GTATGCTATG 102563 |||||||||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| AAGGAGTATA TGTCACGAGT CCCTTATGCC AGTGCCGTAA GAAGTTTGAT GTATGCTATG 621 GTCTGTACAA GGCCAGATTT AGCACATGCA GTCAGTGTAG TGAGCAGATT CATGGAACAA 102623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GTCTGTACAA GGCCAGATTT AGCACATGCA GTCAGTGTAG TGAGCAGATT CATGGGACAA 681 CCAGGGAGAG AACATTGGCA GGCTGTGAAG AGAATTTTCT GGTACCTTAG AGGTACATCT 102683 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCAGGGAGAG AACATTGGCA GGCTGTGAAG AGAATTTTCC GGTACCTTAG AGGTACATCT 741 GACGTTGGTC TCATTTATGG AGGTGATACT CAGTGCTTGG TTACTGGCTA TTCTGATTCA 102743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGTTGGTC TCATTTATGG AGGTGATACT CAGTGCTTGG TTACTGGCTA TTCTGATTCA 801 GACTATGCTG GAGATGTTGA CACAAGAAGA TCGATGACTG GCTATGTGTT TACCCTTGGA 102803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GACTATGCTG GAGATGTTGA CACAAGAAGA TCGATGACTG GCTATGTGTT TACCCTGGGA 861 GGATCTGTCG TCAGTTGGAA GGCAACTTTG CAACCTACAG TGACTTTGTC TACTACGGAA 102863 |||||||||| |||||||||| ||||||||| |||||||| |||||||||| |||||||||| GGATCTGTCG TCAGTTGGAA GGCAACTTTT GCACCTACAG TGACTTTGTC TACTACGGAA 921 GCGGAGTACA T-GGCCTTGA CAGA 102886 || ||||||| | |||||||| |||| GCCGAGTACA TGGGCCTTGA CAGA 945 hqPGS_C08SLe0082C24.1+_SGN-U345812+ (102024 102886) ******************************************************************************** EST sequence 17 +strand 796 n (File: SGN-U339740+) 1 CTTGACACCA AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GTTTTTTTTT TGTTTTACTG AAATTTTAGT TCAGTTGATT GACTATCTGA 121 ATTTTCACGT CTGGTTGGAT TTTTCGTGCC GTGTAGGAAG TTATTTCATT AATTTTAAAT 181 AATAAATTAA AGAGATCGAA GTAAATAGAT GAACTGAAAG AGCATGATGT TGTTATCATG 241 TGTTGGTTTC CTTTGTTGGT TCTTAATCAG ATATTTCGAG TTTTGAGTTT TTAGAAACAA 301 AAAGAATCTT TGATGCCTGA CATGCTGATC ACTGCTAAAA ATTATTATTT TCCCATTGAA 361 AAATATTTAG TGGTTGATTT CACTAATGTT TTGATTGAAT TGGTGGATTA AGAAAAAATA 421 GTATAATAGT AATGGTTTTG TTGAATGCCT TGAATCGGGC CCATACCTGT TAGGGCGTAG 481 CTTAGCTCTA TATATAGACC CTATGGGAAA CCCTATTCTG TAATTCTGTA TTTGCCTCTC 541 CATACTAAAA CTGCTCCCTC TTTTTCCGTG GACGTAGCCA ATATATTGGT GAACCACGTA 601 AATTTTGTGT CTTGTTTTTC GCGTTAATAT TTACTCGATT CATATTAAAT TTCGGATATC 661 AATGTTCATT TTCAAAAAGT TGGATTTTTG CTTTCATATT TGTGAGAATA TGTCGTACCA 721 TTATCTTTTT CCCTAATGAG TTAGGATCAT GGGAAAATCA CACGAGTAAA TATTGGAATT 781 TTTGCCCAAA TTTTCC Predicted gene structure (within gDNA segment 98078 to 106983): Exon 1 98960 98977 ( 18 n); cDNA 439 456 ( 18 n); score: 1.000 Intron 1 98978 103318 (4341 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 103319 103515 ( 197 n); cDNA 457 654 ( 198 n); score: 0.881 Intron 2 103516 104963 (1448 n); Pd: 0.000 (s: 0.74), Pa: 0.887 (s: 0) Exon 3 104964 104978 ( 15 n); cDNA 655 669 ( 15 n); score: 0.667 Intron 3 104979 105248 ( 270 n); Pd: 0.000 (s: 0), Pa: 0.499 (s: 0) Exon 4 105249 105270 ( 22 n); cDNA 670 690 ( 21 n); score: 0.591 MATCH C08SLe0082C24.1+ SGN-U339740+ 0.881 252 0.317 C PGS_C08SLe0082C24.1+_SGN-U339740+ (98960 98977,103319 103515,104964 104978,105249 105270) Alignment (genomic DNA sequence = upper lines): TGTTGAATGC CTTGAATCGG ACCCGCTACA AACAGAAAGG ATGGGCCCAA GCCTGTTAGG 99019 |||||||||| |||||||| TGTTGAATGC CTTGAATC.. .......... .......... .......... .......... 456 GCGTAGCTTA GCACTATATA TAGACGCTAT GGGAAATCCT ATTCTGTAAT TCTGTTTTTG 99079 .......... .......... .......... .......... .......... .......... 456 CCTCTCCATA ATAAAACTGC TCCCTCTCTT CCCGTGGACG TAGCCAATTT ATTGGTGAAC 99139 .......... .......... .......... .......... .......... .......... 456 CACGTAAACT GTTGTCTTGT TTTTCGCATT TATATTTTCT CGTATTATCT CAAATTCCGC 99199 .......... .......... .......... .......... .......... .......... 456 ACAACAAATT GGTATCAGAG CCTCTCGGTT AATCGATGTT CTTGGAGAAT TTGAGATGTC 99259 .......... .......... .......... .......... .......... .......... 456 TGCTTTGAAC GTGAAAATCG ACAAATTCAC AGGGAGGAAC GGTTTCAGTT TATGGCAGAT 99319 .......... .......... .......... .......... .......... .......... 456 CAAGATGCGG GCTTTGTTGA AACAGCAAGG CTTCTGGGCG CCGTTGTCGA AAGACAAGAA 99379 .......... .......... .......... .......... .......... .......... 456 CGCCGTCGTT ACTCCTGAGA TGGCGATTCT GGAGGAAAAG GCGCACTCGA CGATCATGCT 99439 .......... .......... .......... .......... .......... .......... 456 GTGTCTCGCG GATGACGTCA TCACGGAGGT CTCGGATGAA GAGACTGCTG CTGGTCTGTG 99499 .......... .......... .......... .......... .......... .......... 456 GTTGAAGCTG GAGAGTTTGT ACATGACAAA ATCTCTAACC AACAAGCTGC TTCTGAAACA 99559 .......... .......... .......... .......... .......... .......... 456 ACGTCTATTC GGTTTACGAA TGGCTGAAGG TACACAACTC AGGGAACACT TAGAGCAATT 99619 .......... .......... .......... .......... .......... .......... 456 GAATATTTTG CTATTAGAAT TGCGTAATAT CGATGTGAAG ATCGAGGATG AAGATGCTGC 99679 .......... .......... .......... .......... .......... .......... 456 CCTGATTCTG TTAGTATCTC TCCCAATGTC GTTCGAGAAT TTTGTTCAAT CGTTCATTGT 99739 .......... .......... .......... .......... .......... .......... 456 TGGGAAAGAT ACTGTGTCAC TGGAAGAAGT CAGATCGGCC CTTCATAGCA GGGAATTACG 99799 .......... .......... .......... .......... .......... .......... 456 GCATAAGGCT AACGGCACAA GTACGGACAT ACAGCCTTCC GGTCTGTTCA CCAGTAGCGG 99859 .......... .......... .......... .......... .......... .......... 456 AAAGGGAAGG AAAAATGGCG GAAAGAAAAA TAAGCCGATG TCGAAGGGTG CAAAGCCGGA 99919 .......... .......... .......... .......... .......... .......... 456 TGATGTTTGT AATTACTGCA AGGAGAAGGG ACATTGGAAA TTTGATTGTC CGAAGAAGAA 99979 .......... .......... .......... .......... .......... .......... 456 GAAGCAATCG GAAAAACAAT CAGTGTCTGC TGTTGTTGCT GAAGAAGACA CCAATTCTGA 100039 .......... .......... .......... .......... .......... .......... 456 AGAAGATATT GCCCTAGTTG CGGATGAGCA CACTCATTAT TCAGATGTGT GGATTCTTGA 100099 .......... .......... .......... .......... .......... .......... 456 TTCTGGGGCA TCCTATCACA TCTGTCCTAG GAGAGAGTGG TTCACGACTT ATGAGCAGGT 100159 .......... .......... .......... .......... .......... .......... 456 AGACGGAGGC AGCATCTCGA TGGCCAACAG TTCTGTCTGC AAGGTGGTTG GGACAGGCTC 100219 .......... .......... .......... .......... .......... .......... 456 GATCAAGATA AGGACACATG ACGGTAGCTT CTGCACATTG AACGAGGTCA GGCACGTTCC 100279 .......... .......... .......... .......... .......... .......... 456 ATTGATGACG AAAAATCTGA TATCTCTCAG TCTTTTGGAC AGCAAGGGAT TCAGCTGGTC 100339 .......... .......... .......... .......... .......... .......... 456 GGGAAAAGAT GGAGTCTTGC GGGTCTGGAA GGGTTCAAAT TTGATTCTGA AAGGTGTCAT 100399 .......... .......... .......... .......... .......... .......... 456 GCGTGGTACT TTGTATTTTC TACAAGGTTC CACGGTTACA GGTTCAGCCC ATGTTGCATC 100459 .......... .......... .......... .......... .......... .......... 456 GTCAGAATTT CACCAGAAGG ATATGACTAA GTTATGGCAC ATGAGACTTG GTCATATGGG 100519 .......... .......... .......... .......... .......... .......... 456 TGAAAGAGGG ATGCAAATTC TGTCAAAGGA GGATTTACTT GCTGGTCATA AGGTTAAGAG 100579 .......... .......... .......... .......... .......... .......... 456 CCTAGAGTTT TGTGAACATT GTGTTTTTGG AAAACTACAT CGCAACAAGT TTCCAAAGGC 100639 .......... .......... .......... .......... .......... .......... 456 CATTCATAGA ACAAAAGGCA CACTTGATTA TATCCATTCT GATTGCTGGG GTTCATGCCG 100699 .......... .......... .......... .......... .......... .......... 456 TGTTGAGTTT TTGGGAGGCT GCAGATTTTT TGTGTCCATT ATTGATGACT ACTCAAGGAT 100759 .......... .......... .......... .......... .......... .......... 456 GACTTGGGTG TACATGATGA AGCATAAAAG TGAAGCCTTC CAGAAGTTCA AGGAGTGGAA 100819 .......... .......... .......... .......... .......... .......... 456 AATTTTGATG GAAAATCAAA CAGGGAAGAA GATCAAGAGG TTGCGAACTG ATAATGGGCT 100879 .......... .......... .......... .......... .......... .......... 456 GGAATTCTGT TGGTCTGAAT TTGATCAATT CTGTAAGGAT GAAGGGATTG CTCGACATCG 100939 .......... .......... .......... .......... .......... .......... 456 CACAGTCAGA AATACACCAC AGCAGAACGG TGTAGCTGAG CGGATGAATC AAACACTTCT 100999 .......... .......... .......... .......... .......... .......... 456 GGAGAGAGCA AGGTGCATGC TCTCTAATGC TGGGCTAGAT AGAAGATTCT GGGCAGAAGC 101059 .......... .......... .......... .......... .......... .......... 456 GGTTAGTACA GCTTGCTACT TGATTAACCG CGGACCACAT ACAGGCATAC AGTGCAAGAC 101119 .......... .......... .......... .......... .......... .......... 456 ACCTATGGAG ATGTGGTCAG GAAAAGCTGC TGATTATTCA AATCTGAAAG CTTTTGGTTG 101179 .......... .......... .......... .......... .......... .......... 456 TACGGCTTAC TATCACGTCA ATGAAGGTAA GTTAGAACCA AGAGCTAAAA AGGGAGTATT 101239 .......... .......... .......... .......... .......... .......... 456 TGTGGGCTAC GGAGATGGAG TGAAAGGTTT CAGAATCTGG TCTCCAGCAG AAAAGAGGGT 101299 .......... .......... .......... .......... .......... .......... 456 TATTATGAGC AGGAACGTTG TCTTTGATGA AAGTTCTCTG CTTAGAACCA TTGTGAAGCC 101359 .......... .......... .......... .......... .......... .......... 456 TACAACTACG TCAGAAACTG GGAGTCTTGA CAAACAGGTG GAGTTTCAAG TCATTCAGAA 101419 .......... .......... .......... .......... .......... .......... 456 CGAGAGAGAT TTAAAGGAAC CTGAAGAGGA GGATCAAGAG CCACAGACAG AAACTGATAT 101479 .......... .......... .......... .......... .......... .......... 456 TCCAGAATCT ATGCCATCAG ATATCCATCA GAGTATAGCT CAAGATCGGC CAAGGAGGGT 101539 .......... .......... .......... .......... .......... .......... 456 TGGAGTTCGG CCACCTACGA GGTATGGTTT TGAGGACATG GTGGGTTATG CACTGCAGGT 101599 .......... .......... .......... .......... .......... .......... 456 TGCTGAAGAG GTAGATACAT CTGAGCCGTC TACTTACAAA GAAGCCATTT TAAGTTCTGA 101659 .......... .......... .......... .......... .......... .......... 456 TTCTGAAAAA TGGTTTGCCG CTATGGGAGA TGAGATGGAG TCCCTACACA AGAATCAGAC 101719 .......... .......... .......... .......... .......... .......... 456 ATGGGATCTG GTCATACAGC CTTCGGGGAG AAAGATTATT ACTTGCAAAT GGGTTTTCAA 101779 .......... .......... .......... .......... .......... .......... 456 GAAGAAGGAA GGGATATCAC CAGCAGAAGG AGTCAAGTAT AAAGCCAGGG TTGTTGCCAG 101839 .......... .......... .......... .......... .......... .......... 456 AGGTTTCAAC CAAAGAGAGG GAGTGGACTA CAATGAGATC TTCTCACCAG TGGTCAGACA 101899 .......... .......... .......... .......... .......... .......... 456 TACTTCCATC CGAGTGTTAC TAGCGATAGT TGCACATCAG AATCTGGAGC TTGAACAACT 101959 .......... .......... .......... .......... .......... .......... 456 TGATGTGAAG ACAGCGTTTC TACATGGAGA GTTGGAGGAA GAGATATACA TGACTCAGCC 102019 .......... .......... .......... .......... .......... .......... 456 GGATGGTTTC CAAGTTCCAG GGAAGGAAAA TCACGTCTGC AAGTTGAAGA AGTCCTTATA 102079 .......... .......... .......... .......... .......... .......... 456 TGGACTTAAG CAGTCTCCAA GGCAGTGGTA TAAAAGGTTT GACAGCTATA TGGTGAAGTT 102139 .......... .......... .......... .......... .......... .......... 456 GGGCTATACT CGGAGCTCAT ATGATTGTTG TGTCTACTAC AATAGGCTCA ATGATGATTC 102199 .......... .......... .......... .......... .......... .......... 456 ATTCATCTAT CTGGTGCTTT ATGTAGATGA TATGTTGATA GCTGCAAAGA AGAAGTATGA 102259 .......... .......... .......... .......... .......... .......... 456 CATTCAAAAG CTGAAGGGTT TACTTAGTGC TGAGTTTGAG ATGAAGGATC TGGGAGCCGC 102319 .......... .......... .......... .......... .......... .......... 456 TCGGAAGATT TTAGGGATGG AGATCATTAG AGACAGAGAG AGAAGGAAAC TTTTCTTGTC 102379 .......... .......... .......... .......... .......... .......... 456 ACAGAGAAGC TACATTCAGA AGGTCTTGGC GAGGTTTGGC ATGTCTTCAT CTAAGCCCAT 102439 .......... .......... .......... .......... .......... .......... 456 TGATACCCCC AGTGCTGCCA ATATCCATCT CACTGCCATG TTCGCTCCAC AGTCAGAAGA 102499 .......... .......... .......... .......... .......... .......... 456 AGAGAAGGAG TATATGTCAC GAGTCCCTTA TGCCAGTGCC GTAGGAAGTT TAATGTATGC 102559 .......... .......... .......... .......... .......... .......... 456 TATGGTCTGT ACAAGGCCAG ATTTAGCACA TGCAGTCAGT GTAGTGAGCA GATTCATGGA 102619 .......... .......... .......... .......... .......... .......... 456 ACAACCAGGG AGAGAACATT GGCAGGCTGT GAAGAGAATT TTCTGGTACC TTAGAGGTAC 102679 .......... .......... .......... .......... .......... .......... 456 ATCTGACGTT GGTCTCATTT ATGGAGGTGA TACTCAGTGC TTGGTTACTG GCTATTCTGA 102739 .......... .......... .......... .......... .......... .......... 456 TTCAGACTAT GCTGGAGATG TTGACACAAG AAGATCGATG ACTGGCTATG TGTTTACCCT 102799 .......... .......... .......... .......... .......... .......... 456 TGGAGGATCT GTCGTCAGTT GGAAGGCAAC TTTGCAACCT ACAGTGACTT TGTCTACTAC 102859 .......... .......... .......... .......... .......... .......... 456 GGAAGCGGAG TACATGGCCT TGACAGAGGC TGCAAAAGAA GGGATTTGGC TGAAAGGGCT 102919 .......... .......... .......... .......... .......... .......... 456 GGTTAGTGAT CTTGGTCTGC ATCATGATCA GGCTACGGTG TATTGTGACA GTTTGAGCGC 102979 .......... .......... .......... .......... .......... .......... 456 AATTTGTCTA GCCAAGGATC AAGTCCATCA TGAGAGAACC AAGCATATCG ACGTAAGGTA 103039 .......... .......... .......... .......... .......... .......... 456 TCATTTTCTG AGAAGTGAGA AGAGAATCAA GGTGAAGAAA GTAGGAACTG CTGATAATCC 103099 .......... .......... .......... .......... .......... .......... 456 TGCTGATATG TTCACAAAGC CGGTTCCACA GAGCAAGTTT CAACACTGTT TGGACTTGCT 103159 .......... .......... .......... .......... .......... .......... 456 CAACATCAGA AGCTGTTAAT TGCCCTGCGG GGCAACTCTG AGGAAGAGGG GGAGGCCTGG 103219 .......... .......... .......... .......... .......... .......... 456 CACTATCATA GTGCGTCTGA AGAATCTGTT CGGAGAATTC AAGTCAAGGT GGAGATTTGT 103279 .......... .......... .......... .......... .......... .......... 456 TGAATGCCTT GAATCGGACC CGCTACAAAC AGAAAGGACG GGCCCAAGCC TGTTAGGGCG 103339 | |||||| || |||||||||| .......... .......... .......... .........G GGCCCATACC TGTTAGGGCG 477 TAGCTTAGCA CTATATATAG ACGCTATGGG AAACCCTATT CTGTAATTCT GTTTTTGCCT 103399 ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| || ||||||| TAGCTTAGCT CTATATATAG ACCCTATGGG AAACCCTATT CTGTAATTCT GTATTTGCCT 537 CTCCATAATA AAACTGCTCC CTCTCTTCCC ATGGACGTAG CCAATTTATT GGTGAACCAC 103459 ||||||| || |||||||||| |||| || || ||||||||| ||||| |||| |||||||||| CTCCATACTA AAACTGCTCC CTCTTTTTCC GTGGACGTAG CCAATATATT GGTGAACCAC 597 GTAAACTGT- TGTCTTGTTT TTCGCATTTA TATTTTCTCG TATTATCTCA AATTCCGCAC 103518 ||||| | | |||||||||| ||||| || | ||||| |||| | || | | |||| || GTAAATTTTG TGTCTTGTTT TTCGCGTTAA TATTTACTCG ATTCATATTA AATTTCG... 654 AACAACAGCA ATTAAGCACC AGCACATGAA GCAACCGTTC ATTGGTTGAG ATTTGAGCGT 103578 .......... .......... .......... .......... .......... .......... 654 CAGTGCCATT TCTTTTCCAT TCTTTGTTTT TGGTAGTAAC TATGATATTG CCATTGTTTA 103638 .......... .......... .......... .......... .......... .......... 654 GAACTTCAAT GATCTGCTGA TATTGTGGAG CATGCAAAAC TAAAAGCTAT CAAGTAAAAG 103698 .......... .......... .......... .......... .......... .......... 654 TAATCGTAAT GTGCTAGTTC ATATAAGACC ATCTAAAAGC TATCAATTAA AACTTATCGC 103758 .......... .......... .......... .......... .......... .......... 654 AGTGTGTACA TATATTTGCA ATTAGCAGCA AAACAGAGCA AAAACAAAGC ATTAAGATCA 103818 .......... .......... .......... .......... .......... .......... 654 GAAAAAGTGA TTAACCTTAA GGAATCAACC TCGCCCATTG TCACCTACAA CAAAGTTAAA 103878 .......... .......... .......... .......... .......... .......... 654 CACCTGCAGT GTTTAAAAAC CACAAACAAC ATTTAACTTG TTAAAAGTGA ATGATTAAAA 103938 .......... .......... .......... .......... .......... .......... 654 GTAAAAAAAA AAAACAATTG AGAAAGATAA AAAGGAAGAG AAGACGGCAT AAACTACAAT 103998 .......... .......... .......... .......... .......... .......... 654 ATATGTTTTC CATCACAGGT TATTCATATC ATCCCCGATA AAACTTTCTA CTTGAGCACT 104058 .......... .......... .......... .......... .......... .......... 654 ACCAAAAAAC TATTGAGGAT GTAGGACCTT GGATGGTTGA GTATGGTGAC AGAAAACAAA 104118 .......... .......... .......... .......... .......... .......... 654 ACATGGAACA GGATCAATCT AAGCCTTATC ATCCTTACGA TCAGAATGGA CTCTTTGATT 104178 .......... .......... .......... .......... .......... .......... 654 TTCCTCTCCT TCGTTCATGA TCACACTTCT GTTAAAAATT CACCTTAACT ATTATGCAAC 104238 .......... .......... .......... .......... .......... .......... 654 AAAAACAAAG CGCCAAAAAT ATATACCTGT ATTTTATCCG GGCACGGAAA AGAGAAACAG 104298 .......... .......... .......... .......... .......... .......... 654 TTAAATGGAC AATAACATGT CATTTGAGAT AATTATACAG ATGATGAGAG TAGCTGAAAA 104358 .......... .......... .......... .......... .......... .......... 654 GATTTTGGAA GAAGGATACT GAAAATTCAT GACCGCTGCA GAAGAGAAGT CGAGCAGCAA 104418 .......... .......... .......... .......... .......... .......... 654 CTACAAGACT GTTACAGCGA TCTGGCGTTT CAGAACAATT AATTTAGGGC TATCAGCAAA 104478 .......... .......... .......... .......... .......... .......... 654 TTAAATTTAT AATAAATTAA TATTTAACTA ATATTTTTAA TAAATTAATA TATAAATTAT 104538 .......... .......... .......... .......... .......... .......... 654 ACTGTAGGAT TAAAACGGTA AATCAACTTT GGGATTAGGA GGTTCATGCC TATAATAATA 104598 .......... .......... .......... .......... .......... .......... 654 TATGATATGA TGATGATAAT ATCGGGCAGA AAGATATGTA TTTGTATTTT AATATCCCAT 104658 .......... .......... .......... .......... .......... .......... 654 CTCTCACAAC CACAATAATA ACTTTACAAG AAAAGAAGTG GAAAAAATAA ACTTGCCATC 104718 .......... .......... .......... .......... .......... .......... 654 AAATAATAAA TTCAAATTAG TGAATTAGAA AAAACATGTG AGAAGATCAA ATATGTCCCT 104778 .......... .......... .......... .......... .......... .......... 654 TCATTGATTT TTTAAAAAAA TGTTATTTGT AAGTCATTTG TTTAACCAAA ATAAAGACAT 104838 .......... .......... .......... .......... .......... .......... 654 ATCAAACCCT TTTTCTCAAA ACAAAATAAA ATTACATTCG TAATAGTAAA CTCAACATAT 104898 .......... .......... .......... .......... .......... .......... 654 GGCTGAAGCT GTCGTTAAAG TTCTCATAGA CAATCTCACT TCTTGTATTG ATTTTCGGGA 104958 .......... .......... .......... .......... .......... .......... 654 AACAGGTACT CATTGTTAAT GTTTGTAATT ATTGGCCAAC AGTATCACTT TCTGAATGAA 105018 | | || |||| || .....GATAT CAATGTTCAT .......... .......... .......... .......... 669 TCTTGTGGCA CAGGGAAAAA TAACAAATAT AACGCCATTA CCTGTCTTCT GGTGGTTGTG 105078 .......... .......... .......... .......... .......... .......... 669 CTGCTGCAAT GGAGTAACAT GGAGATTATA ATTGAGAGTA AAACCTTCTA TTGCTATTAA 105138 .......... .......... .......... .......... .......... .......... 669 ATAGAATCTG CAATTAAAAA AAAAAATTAC ATAGATACAA TATGGAACTT CAATATGTAC 105198 .......... .......... .......... .......... .......... .......... 669 AACTTGGAAA CCCTTTCAAT GCTTGAGGTC TCAGTTTTTA CCACATTCAG ATACAAAAAT 105258 | |||||| .......... .......... .......... .......... .......... TTTCAAAAA- 678 GTAGTAACAA TG 105270 || | | || GTTGGATTTT TG 690 hqPGS_C08SLe0082C24.1+_SGN-U339740+ (103319 103515) ******************************************************************************** EST sequence 43 +strand 507 n (File: SGN-U331167+) 1 AAATTTTGGT GGTGTTCATG AAAATGTTTA AAAATCACGC GATAAGAATG AACAAGCAGC 61 TGATGCTGAA AAAAAGAAAC TGGAGAAGGA AGCTTTGAAG GAACAAGTGG CTGCTAGTTC 121 TTCTGGGAAG AAAGGAGTTG GTGACTCTGA TAGAGTAAAA CTGAATTTTT TAAATCAGTT 181 ACATGCTGTG TGAATCAGTT CAAATCGTCC GAAGCTTATA CTACTCCATG AACTGCCAGA 241 ATCAGTCAAA AACTTTTTTT GATGATAGCA GCAGAGCCTA AGAAGGCTCT TTTGATATGC 301 CACTGTACGA TTTAAGTTTT ATAGTTAGTT ATATCTGTAC ATAATTTCCA TAGTTAAGTC 361 GGCATTATTT TTTTGCCATT TTAGAATCGC GCACAATTGC CATTGTTACT ACATTTTTGT 421 ATCTGAATGT GGTAAAAACT GAGACCTCAA GCATTGAAAG GGTTTCCAAG TTGTACATAT 481 TGAAGTTCAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 106666 to 104383): Exon 1 105671 105183 ( 489 n); cDNA 1 488 ( 488 n); score: 0.992 PPA cDNA 489 507 MATCH C08SLe0082C24.1- SGN-U331167+ 0.992 489 0.964 C PGS_C08SLe0082C24.1-_SGN-U331167+ (105671 105183) Alignment (genomic DNA sequence = upper lines): AAATTTTGGT GGTGTTCATG AAGATGTTTA AAAAATCACG CGATGAGAAT GAACAAGCAG 105612 |||||||||| |||||||||| || |||||| |||||||||| |||| ||||| |||||||||| AAATTTTGGT GGTGTTCATG AAAATGTTT- AAAAATCACG CGATAAGAAT GAACAAGCAG 59 CTGATGCTGA AAAGAAGAAA CTGGAGAAGG AAGCTTTGAA GGAACAAGTG GCTGCTAGTT 105552 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGCTGA AAAAAAGAAA CTGGAGAAGG AAGCTTTGAA GGAACAAGTG GCTGCTAGTT 119 CTTCTGGGAA GAAAGGAGTT GGTGACTCTG ATAGAGTAAA ACTGAATTTT TTAAATCAGT 105492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGGGAA GAAAGGAGTT GGTGACTCTG ATAGAGTAAA ACTGAATTTT TTAAATCAGT 179 TACATGCTGT GTGAATCAGT TCAAATCGTC CGAAGCTTAT ACTACTCCAT GAACTGCCAG 105432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATGCTGT GTGAATCAGT TCAAATCGTC CGAAGCTTAT ACTACTCCAT GAACTGCCAG 239 AATCAGTCAA AAACTTTTTT TGATGATAGC AGCAGAGCCT AAGAAGGCTC TTTTGATATG 105372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAGTCAA AAACTTTTTT TGATGATAGC AGCAGAGCCT AAGAAGGCTC TTTTGATATG 299 CCACTGTACG ATTTAAGTTT TATAGTTAGT TATATCTGTA CATAATTTCC ATAGTTAAGT 105312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGTACG ATTTAAGTTT TATAGTTAGT TATATCTGTA CATAATTTCC ATAGTTAAGT 359 CGGCATTATT TTTTTGCCAT TTTAGAATCG CGCACAATTG CCATTGTTAC TACATTTTTG 105252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCATTATT TTTTTGCCAT TTTAGAATCG CGCACAATTG CCATTGTTAC TACATTTTTG 419 TATCTGAATG TGGTAAAAAC TGAGACCTCA AGCATTGAAA GGGTTTCCAA GTTGTACATA 105192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTGAATG TGGTAAAAAC TGAGACCTCA AGCATTGAAA GGGTTTCCAA GTTGTACATA 479 TTGAAGTTC 105183 ||||||||| TTGAAGTTC 488 hqPGS_C08SLe0082C24.1-_SGN-U331167+ (105671 105183) ******************************************************************************** EST sequence 29 +strand 1084 n (File: SGN-U324751+) 1 TCCACCACCC CCTAGGCGGG GTTTGACACC CACTCCACCT CCCCCGCCTG GTGGAAAGGG 61 CCTTAGTGTG CCAGCGCCAC CACCTCCATC TACCGGACGT GTAAGAGCCT CTGTAGGTTC 121 AACTGCTCTA GGGAAAGGGC GAGGTACAGG AGGCACTTCA ATTCCTCCGA AAAAAGCTTC 181 ATTGAAGCCC TTACATTGGT CGAAAGTTAC ACGGGCTATG CAAGGGAGTT TATGGGCTGA 241 TACACAAAAC AAGGAAAATA CTTCCAGAGC ACCTGAAATT GATATTACGG AGCTTGAGAA 301 TTTGTTTTCA GTGGCTTCAG CTACTGATGG CACTAGCAAA GGTGGAGGTC GACGTGGTTC 361 AAAAATCAAC AAACCAGAAA AAGTGCAATT GATTGATTTG CGCAGGGCAT ACAATTGTGA 421 AATCATGCTT ACAAAAATCA AGATTCCCCT GCCTGATATG CTTAATGCTA TTTTGGCTTT 481 GGATTCATCA GCTCTGGACA TTGATCAGGT TGAAAATCTG ATAAAATTTT GCCCAACAAA 541 AGAAGAAATG GAGACACTGA GGAACTATAA TGGGGACAAG GGGATGCTTG GAAAGTGTGA 601 GCAGTTTTTC CTGGAGCTGA TGAAGGTTCC ACGAGTTGAG TCCAAGTTAC GAGTGTTTTC 661 ATTTACTATC ACTTTCTCTA ATCAGGTGAA GGACTTGAGA AGTAACCTGA GTACAATTAA 721 TGATGCTACT AGAGAGGTGA AAGAATCTGC CAAATTACGT CAGATAATGC ACACCATTCT 781 AACATTGGGA AATGCTCTGA ATCAGGGTAC AGCACGAGGA TCTGCTGTAG GGTTCAAGTT 841 GGACAGTCTT CTTAAGCTTT CTGACACTCG TGCGAGAAAC AACAAAATGA CCTTGATGCA 901 TTATCTGTGC AAGCTCCTTG CTGAGAAAAT GCCAGAGTTG CTTGATTTTG ACAAGGATCT 961 TCTTCACTTG GAAGCTGCTT CTAAGATTCA ACTGAAGTCT TTGGCTGAAG AAATGCAAGC 1021 AGTGAGTAAA GGTCTTGAGA AAGTTGAACA AGAACTTACT GCATCCGACA ACGATGGTAC 1081 AATA Predicted gene structure (within gDNA segment 115183 to 106367): Exon 1 114583 114317 ( 267 n); cDNA 1 267 ( 267 n); score: 1.000 Intron 1 114316 114023 ( 294 n); Pd: 0.808 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 2 114022 113899 ( 124 n); cDNA 268 391 ( 124 n); score: 1.000 Intron 2 113898 112905 ( 994 n); Pd: 0.999 (s: 1.00), Pa: 0.907 (s: 1.00) Exon 3 112904 112833 ( 72 n); cDNA 392 463 ( 72 n); score: 1.000 Intron 3 112832 111284 (1549 n); Pd: 0.981 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 111283 111185 ( 99 n); cDNA 464 562 ( 99 n); score: 1.000 Intron 4 111184 110511 ( 674 n); Pd: 0.971 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 110510 110469 ( 42 n); cDNA 563 604 ( 42 n); score: 1.000 Intron 5 110468 110375 ( 94 n); Pd: 0.595 (s: 1.00), Pa: 0.629 (s: 1.00) Exon 6 110374 110294 ( 81 n); cDNA 605 685 ( 81 n); score: 1.000 Intron 6 110293 110206 ( 88 n); Pd: 0.966 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 110205 110155 ( 51 n); cDNA 686 736 ( 51 n); score: 1.000 Intron 7 110154 110076 ( 79 n); Pd: 0.977 (s: 1.00), Pa: 0.698 (s: 0.98) Exon 8 110075 109994 ( 82 n); cDNA 737 818 ( 82 n); score: 0.988 Intron 8 109993 109898 ( 96 n); Pd: 0.996 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 9 109897 109803 ( 95 n); cDNA 819 913 ( 95 n); score: 1.000 Intron 9 109802 107239 (2564 n); Pd: 0.992 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 10 107238 107167 ( 72 n); cDNA 914 985 ( 72 n); score: 1.000 Intron 10 107166 107076 ( 91 n); Pd: 0.995 (s: 1.00), Pa: 0.939 (s: 1.00) Exon 11 107075 106977 ( 99 n); cDNA 986 1084 ( 99 n); score: 1.000 MATCH C08SLe0082C24.1- SGN-U324751+ 0.999 1084 1.000 C PGS_C08SLe0082C24.1-_SGN-U324751+ (114583 114317,114022 113899,112904 112833,111283 111185,110510 110469,110374 110294,110205 110155,110075 109994,109897 109803,107238 107167,107075 106977) Alignment (genomic DNA sequence = upper lines): TCCACCACCC CCTAGGCGGG GTTTGACACC CACTCCACCT CCCCCGCCTG GTGGAAAGGG 114524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCACCC CCTAGGCGGG GTTTGACACC CACTCCACCT CCCCCGCCTG GTGGAAAGGG 60 CCTTAGTGTG CCAGCGCCAC CACCTCCATC TACCGGACGT GTAAGAGCCT CTGTAGGTTC 114464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTAGTGTG CCAGCGCCAC CACCTCCATC TACCGGACGT GTAAGAGCCT CTGTAGGTTC 120 AACTGCTCTA GGGAAAGGGC GAGGTACAGG AGGCACTTCA ATTCCTCCGA AAAAAGCTTC 114404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCTCTA GGGAAAGGGC GAGGTACAGG AGGCACTTCA ATTCCTCCGA AAAAAGCTTC 180 ATTGAAGCCC TTACATTGGT CGAAAGTTAC ACGGGCTATG CAAGGGAGTT TATGGGCTGA 114344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAAGCCC TTACATTGGT CGAAAGTTAC ACGGGCTATG CAAGGGAGTT TATGGGCTGA 240 TACACAAAAC AAGGAAAATA CTTCCAGGTA TGAAGATTTT ATTTTTGGGG ATGAAAATTA 114284 |||||||||| |||||||||| ||||||| TACACAAAAC AAGGAAAATA CTTCCAG... .......... .......... .......... 267 CAATGAGAAC TTTCTGTGTC ATTTCAATTT AATAGTCAGA GCTAATTTGT TCGCTATTTC 114224 .......... .......... .......... .......... .......... .......... 267 TCGTGTCTCG TGAAACTCCT TAACAGGTTG TCACAAGCAC TATCATTCTC ACGGTTTCAA 114164 .......... .......... .......... .......... .......... .......... 267 CTTCTAATGC TTAATAGATT GCAGATATAG TAGTTCTGAG CACTTTGAGC TTAACCTAGT 114104 .......... .......... .......... .......... .......... .......... 267 TTGTGTTGGG TACTGCAATT TTTATTTGTT ATCTGTCTGT TATGGGTAGT TCTGATAAGA 114044 .......... .......... .......... .......... .......... .......... 267 TTTTATTAAT GTACATGACA GAGCACCTGA AATTGATATT ACGGAGCTTG AGAATTTGTT 113984 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .AGCACCTGA AATTGATATT ACGGAGCTTG AGAATTTGTT 306 TTCAGTGGCT TCAGCTACTG ATGGCACTAG CAAAGGTGGA GGTCGACGTG GTTCAAAAAT 113924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTGGCT TCAGCTACTG ATGGCACTAG CAAAGGTGGA GGTCGACGTG GTTCAAAAAT 366 CAACAAACCA GAAAAAGTGC AATTGGCAAG TTATATATGC TTTATCTTGT TTCCAGTCTC 113864 |||||||||| |||||||||| ||||| CAACAAACCA GAAAAAGTGC AATTG..... .......... .......... .......... 391 TACATCTGTT ATTCTCCAGT AGGCATTATC TAGCAAGTCT TTCATGTAGT AAAGTGAGTG 113804 .......... .......... .......... .......... .......... .......... 391 TTGTAGGATG AGTGTATCTC CTTCCTTTAC TAGTTTAACT AAACAATTAA ATATTAGATA 113744 .......... .......... .......... .......... .......... .......... 391 GGTTTTAAAG AGTTTTTTTT ATGGTATCTT GTGGCTAACA AGGTGGAAGA AAAGAAGTGG 113684 .......... .......... .......... .......... .......... .......... 391 ATAGAAAGGC TTAAATGGGT TTAACATAGG TGACGTTTCG AAACAAGCAT GCCCTTATAG 113624 .......... .......... .......... .......... .......... .......... 391 AGAAGAACTT GTGTTTTTTC AGCCCGGATG TGGATGATTA CATAAACTTT GGGTGGAAAA 113564 .......... .......... .......... .......... .......... .......... 391 GTCCTCCTTT CTCCATCCTG TAGGTAACAC TATTTCTGTT TCATGAAAGT TGAGATAATT 113504 .......... .......... .......... .......... .......... .......... 391 ATCTTTGTAT CCTAGGGTAA GGTCCTTCAT CTCCAACCAT AAGGTTGGGG GTTTGATTAA 113444 .......... .......... .......... .......... .......... .......... 391 CGAAGGGATA AAGGGGGAAA CCACTCTTGG GCCTCTTAGG CAGAGGGTTT AGTGGATGGA 113384 .......... .......... .......... .......... .......... .......... 391 GTCAATCATA TAAAAAAATA ATCGTTGCCT TTGAAAAATT CTTAAAAGCT GTGTTGATAC 113324 .......... .......... .......... .......... .......... .......... 391 TTTGAGATGT AAATTCATGC AACAGAGTAA TTCTATTAGG CTGCGATACA TGTCTAGATC 113264 .......... .......... .......... .......... .......... .......... 391 TAATGAAAGA GTTGCGGAGG CTATGCTCAT GATGGGCACT GTGTCCCATG GGGATGGCCA 113204 .......... .......... .......... .......... .......... .......... 391 TTGACCATGA ATGAATTGCA GTTCACTTGC TTCTTAATTT ATCTGTTAGT GCTAAATTGG 113144 .......... .......... .......... .......... .......... .......... 391 GAAAGATATA GAAAACTTCT ATAGAAAGAA ACTGATAGTT TTCAAAGCTT TCACTGTATA 113084 .......... .......... .......... .......... .......... .......... 391 ATATGAGATC ACTATGGAAT AGTTGGTGAA CAGTCCATTG GTGTTGGCTT CTTTTTCTTC 113024 .......... .......... .......... .......... .......... .......... 391 CTGAGGTATT GGAGGTTTAT TTTACAGACT CCCATTATTT ATAGTGAAAG ACTGTAAGTG 112964 .......... .......... .......... .......... .......... .......... 391 TTACATTTTG GTCTAATGTT AAAAGACCGG GATGATTTCT TAACATATGC TTTTGCCAGA 112904 | .......... .......... .......... .......... .......... .........A 392 TTGATTTGCG CAGGGCATAC AATTGTGAAA TCATGCTTAC AAAAATCAAG ATTCCCCTGC 112844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTGCG CAGGGCATAC AATTGTGAAA TCATGCTTAC AAAAATCAAG ATTCCCCTGC 452 CTGATATGCT TGTGAGTTCT TTTTGTGTCT TCTTGTTTCT ACTATTAGCT TCGATACTTT 112784 |||||||||| | CTGATATGCT T......... .......... .......... .......... .......... 463 TATCTATTGC ACTAATTTAT GTCTTCTAGC CAACAGGTGG GTCTTTTGAT AATATTCTTT 112724 .......... .......... .......... .......... .......... .......... 463 TATTGTTTAT CAGATGAAAC TATTAGATTA TGTGACTTTA CTTGGGCTTT AGGGCAATCA 112664 .......... .......... .......... .......... .......... .......... 463 GATATTTGGA AATTGAGCTG CTAATAATTT AAAAAGTAAC ACAAACTAAA CAGCCATTAA 112604 .......... .......... .......... .......... .......... .......... 463 AATTAACGAA TCTTTTCCAA AAGATTACAA TTTAGTATTT TAGTTTTTTT TAATCCCTTT 112544 .......... .......... .......... .......... .......... .......... 463 GTACATTTGC TAAAACTATA GAAGTATGTA TCTGATGAAT CAAATAGATA TGCAAAATTA 112484 .......... .......... .......... .......... .......... .......... 463 TTGAATCAGC TTAATGGGTT TGAATAAAAG TCCATTCTCA ACAACAAAAA AAAAAGGAAA 112424 .......... .......... .......... .......... .......... .......... 463 AGATTGTTGT ATCTTGTATG TATTGAACTC TACATGCTAT AATCTTTTTA TTAGATTAAA 112364 .......... .......... .......... .......... .......... .......... 463 AAGATTATAT TATGTACTGA ACTCTAAATT GAAGTATCTT CGTTTCTGCT TAATAGAAGT 112304 .......... .......... .......... .......... .......... .......... 463 ACAATATATT GATTAACTAT CTATATTTTT TCTCAACAAA GGAATGAAGA ACGTATCGAT 112244 .......... .......... .......... .......... .......... .......... 463 CGGTTAACTA CACATAACAT TTATGTCATA CTCAGAGGAG TTTGGTAGTT TGACTATTTT 112184 .......... .......... .......... .......... .......... .......... 463 TATGTTAGCC ATTAACCTAT AACAGTTCTC CTTGTAATTC AGTTTCAAGT TAGTTATGCT 112124 .......... .......... .......... .......... .......... .......... 463 TTTCTCATAT TGGTGGAGTT CAATGAGCAC TTTAGAGTGT GGCCAAGTGG TTTTTCTAAA 112064 .......... .......... .......... .......... .......... .......... 463 ACTAAGATTT GGTGGTTTTC CTCATCTGAT TGCATTTTGG AGGGCATAGT TCCCCGTACC 112004 .......... .......... .......... .......... .......... .......... 463 TATGTTGATA GGAGGTGTCA AAGTACCCTA TAACTTAGTC AAGATACATG CACAAGTAGG 111944 .......... .......... .......... .......... .......... .......... 463 ATCAGACACT ATCGTTATTA GAAATATTTT TTAGCCGGAG TTCAATGAAA TGTATAATGA 111884 .......... .......... .......... .......... .......... .......... 463 AACCTTTATT TTGTACAAGG AGAAAATGAG CTTTCTATGG AAGTAGAAAA AAAGAGCTAG 111824 .......... .......... .......... .......... .......... .......... 463 CTGTAGAACT ATTTATCCAA AAGACTTTCT TATTTTTGAT ATTTTTGATA ATTTTATTGT 111764 .......... .......... .......... .......... .......... .......... 463 GTTGAAAAGA TCATGTAATT TCACCGAAGT TGAAGAGTTC AAAATTGAAC TCTTATGGAT 111704 .......... .......... .......... .......... .......... .......... 463 ATTTTTCCTT TGAAATTCAA AGGAATCATG ATACAAATTG TATAAAATAT TCTATCCTTT 111644 .......... .......... .......... .......... .......... .......... 463 GGCCTTTGGT CAAAATCATG TTTCATAATG CACAGTATCC ATATGCTGAT TCATGCATGT 111584 .......... .......... .......... .......... .......... .......... 463 GTTCAATAAG TGTAATGACT GACGAGCATT TCTTTAGGAT GCTCATGCAT GGTTTCTTTG 111524 .......... .......... .......... .......... .......... .......... 463 GAAGTTCTTT TTTCCTTATT TTGAGTTTTA ATGGAGGTAC ATTGAAATGA ATGAAATATT 111464 .......... .......... .......... .......... .......... .......... 463 TCCCATGGAT TTCTTTTTAC TAATATTATA ACAACAGTTG CGCCTCAGTT CCAAACAAGT 111404 .......... .......... .......... .......... .......... .......... 463 TGGGGTCCGC TATATGAATA CTCGCGGCCA GTATTATGCA AATGCAAATA AAATTTCTGT 111344 .......... .......... .......... .......... .......... .......... 463 TTACAAAGGA AAATTTACTG CGGATTTCTG ACTAATTATA TTTGTATGCA TGTCTTACAG 111284 .......... .......... .......... .......... .......... .......... 463 AATGCTATTT TGGCTTTGGA TTCATCAGCT CTGGACATTG ATCAGGTTGA AAATCTGATA 111224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTATTT TGGCTTTGGA TTCATCAGCT CTGGACATTG ATCAGGTTGA AAATCTGATA 523 AAATTTTGCC CAACAAAAGA AGAAATGGAG ACACTGAGGG TATAATCTCT TTCTCATCCT 111164 |||||||||| |||||||||| |||||||||| ||||||||| AAATTTTGCC CAACAAAAGA AGAAATGGAG ACACTGAGG. .......... .......... 562 ACTGTGCTTG CCTATCATGG CAAAGTTTAA GTTACAATAA TATGATTATA ATGTTTGTCT 111104 .......... .......... .......... .......... .......... .......... 562 AGTCATTTAT TTTGAGTTCA CGAGTAATAT TAGAGGTATG TTCTGAAGTT TGCTTTGATT 111044 .......... .......... .......... .......... .......... .......... 562 CTTCTTTTAA CTTTTCTCGT TTAGAGAAAA TACTCCATGT TGAAGTTTTT TGCCCATAGT 110984 .......... .......... .......... .......... .......... .......... 562 ATTTGGAAAC AAGAGTCAAA ACCTTCACAT TCTGCAATTG TACTTAACGT TAGAATAGTT 110924 .......... .......... .......... .......... .......... .......... 562 AAGTGAGTCA TAGGAACAGC AGGAGTCTAT AATTTTGTTG ATGTGCCATT TGTTGCAAGT 110864 .......... .......... .......... .......... .......... .......... 562 AGCTGTGCAG GTTGATGCCC ATAATTCAAT GACCCATTTA GCGGTTTCAT GCTTATACAG 110804 .......... .......... .......... .......... .......... .......... 562 TATGTACTTG CATCTATGCT GTGCGTGCAT GCTCATGTGT CTGTTTCAAT GTCTAATCAT 110744 .......... .......... .......... .......... .......... .......... 562 GCAGATACCT ATTTCTGGGA ACTTCCTTTC CCGGTGGGTG CGGATGTGTA TAAACATAGG 110684 .......... .......... .......... .......... .......... .......... 562 CATATATCTT AGTCTTTTGT GTATGTAGAT CCATAGTTGT TTCTGCTTGA TTTCCCCCTC 110624 .......... .......... .......... .......... .......... .......... 562 TCTTTGTGAA CTTAGTTGTG TTAGTTTCTT GACAGTCTAT ACTTGCCATT TGATATTTAA 110564 .......... .......... .......... .......... .......... .......... 562 TTGTTATTCT TGATTTCACA ATTTGATCTT ACTGTTTATT TTCTATTTTC CAGAACTATA 110504 ||||||| .......... .......... .......... .......... .......... ...AACTATA 569 ATGGGGACAA GGGGATGCTT GGAAAGTGTG AGCAGGTCTT CTCCATTTTG ACCATATATG 110444 |||||||||| |||||||||| |||||||||| ||||| ATGGGGACAA GGGGATGCTT GGAAAGTGTG AGCAG..... .......... .......... 604 TGGGGAAGTA CAAGTTTTCC TATCCTTTAA GTTATAAGTA ATTAACCGGA TTAGTAATAC 110384 .......... .......... .......... .......... .......... .......... 604 CCGTTTCAGT TTTTCCTGGA GCTGATGAAG GTTCCACGAG TTGAGTCCAA GTTACGAGTG 110324 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........T TTTTCCTGGA GCTGATGAAG GTTCCACGAG TTGAGTCCAA GTTACGAGTG 655 TTTTCATTTA CTATCACTTT CTCTAATCAG GTATTTGCTC TTGTACTTCT TAGTGATCTA 110264 |||||||||| |||||||||| |||||||||| TTTTCATTTA CTATCACTTT CTCTAATCAG .......... .......... .......... 685 ATGTCTATGG ATTCTGCCAT TAATTTTTCT GTTGACTATA ATATGTTGAA TTGTTCAGGT 110204 || .......... .......... .......... .......... .......... ........GT 687 GAAGGACTTG AGAAGTAACC TGAGTACAAT TAATGATGCT ACTAGAGAGG TATTTTTAAT 110144 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGGACTTG AGAAGTAACC TGAGTACAAT TAATGATGCT ACTAGAGAG. .......... 736 ACCTTATGAA GTTTGATTTG GCACATTCTG ATTTAACTAG GCTCTAACTG AATTTCCTGG 110084 .......... .......... .......... .......... .......... .......... 736 TCAAGTAGGT GAAAGAATCT GCCAAATTAC GTCAGATAAT GCAGACCATT CTAACATTGG 110024 || |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ........GT GAAAGAATCT GCCAAATTAC GTCAGATAAT GCACACCATT CTAACATTGG 788 GAAATGCTCT GAATCAGGGT ACAGCACGAG GTACAGTTTT CTAAGATCTA TATCTCTATA 109964 |||||||||| |||||||||| |||||||||| GAAATGCTCT GAATCAGGGT ACAGCACGAG .......... .......... .......... 818 AGAAAACAAT CAGTTGTTGG GTGGAGTCGT CGTGACTAAC ATCTTTGTTT TGTAATTACG 109904 .......... .......... .......... .......... .......... .......... 818 TCACAGGATC TGCTGTAGGG TTCAAGTTGG ACAGTCTTCT TAAGCTTTCT GACACTCGTG 109844 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GATC TGCTGTAGGG TTCAAGTTGG ACAGTCTTCT TAAGCTTTCT GACACTCGTG 872 CGAGAAACAA CAAAATGACC TTGATGCATT ATCTGTGCAA GGTAGAATTA CTGCATTATG 109784 |||||||||| |||||||||| |||||||||| |||||||||| | CGAGAAACAA CAAAATGACC TTGATGCATT ATCTGTGCAA G......... .......... 913 ATGCCTTTCT GTTTTTACTT TTATGTACTC GTATTGATCA ATTAGCTCTG AATTGGGAAG 109724 .......... .......... .......... .......... .......... .......... 913 AGTTGAAGGT GACTTAAGCG TAAGTTGAAT CAGATTAGTT TTGGCTCAAT AATGATTGTT 109664 .......... .......... .......... .......... .......... .......... 913 GAGTAGCTCA TGATTGAATT GAAAAAGTGC CAAGTGTATT TGAGGTCTAT ATCATAACCC 109604 .......... .......... .......... .......... .......... .......... 913 ATCTAAAACC ATGAAGGGGG CTACTTTAGA GGAGGCGAGC GCTTTCAAGG TTTCAACACT 109544 .......... .......... .......... .......... .......... .......... 913 CAGAAGCCAA ATGATTCTTT GTTTAAGTTT TAATTAGAAA GTTAAAGAAA TTGGGGAATA 109484 .......... .......... .......... .......... .......... .......... 913 GTTCCATGTT AGGCATGGCT GGTAGGCGTG GTTGTTTTGG CACAAGAGGA TGCTACGAAG 109424 .......... .......... .......... .......... .......... .......... 913 ATGAAGCATG CATGAGGCAT GGTGAAGAAG CTCTAGTGGA AGCCATAGTG TACAAGCACG 109364 .......... .......... .......... .......... .......... .......... 913 GTTCACAAAC ATAAGTGTGG CATGATGCGC AAGCGCAACA AAGCCATGGA CCAGGCTAAC 109304 .......... .......... .......... .......... .......... .......... 913 AGAGAGGAGG CAAGGAATTT CAAGGTCAAA TGATTCATTG TCTTAGTAGT AACGCAAAGA 109244 .......... .......... .......... .......... .......... .......... 913 AAATTAGGAA CTGTTTCATG GAGGCATGGC TGGTATGGTG ATAGTGTTAG CACAAGAGCA 109184 .......... .......... .......... .......... .......... .......... 913 TGGTCTGATG ATGTAGCATG CACGAGGCGT GGTGAAGCAC AAGTGGGAAC CATAGTGCAC 109124 .......... .......... .......... .......... .......... .......... 913 AAGCAAGGCT CACCACATAA GTATGACATG GTTCTACACA ATTAAGGAAG ATGCATGAGG 109064 .......... .......... .......... .......... .......... .......... 913 CTTTAGAATG CTTGGTAGTA CACTTAGTAG TTCAGGAATT ACTAGGACTA TTGGTGGGTT 109004 .......... .......... .......... .......... .......... .......... 913 GATTGATCCA TATCATTTAC AAAGGAGAGA TTACTCCAGC AAAAGAGGTT AAACATAACT 108944 .......... .......... .......... .......... .......... .......... 913 AAATGCCACA CATGCATCTA ACACTTAAAA CTTCTTGATT CATACTTTGT CTAAGTGTAG 108884 .......... .......... .......... .......... .......... .......... 913 CCCCTATCAT TGGGGATTAT TGGCTAAGTG CTGCACTTGA CGCTAGTACG ACAGTAGGTC 108824 .......... .......... .......... .......... .......... .......... 913 GGTGATAGCT AGATCCAGTA TCAACTCCAA GTCTCCAATA CTCTAAAATG AAATAGAAGA 108764 .......... .......... .......... .......... .......... .......... 913 TCAAACATGA AATTAGCTAT ACAAGACTAT CTAAATAGAA ATTAAAAATT TCAAGCTTAG 108704 .......... .......... .......... .......... .......... .......... 913 AGTATCTTGC CAAATGAATC AATTGGAAAT AAAATACACA AAAAATCTAT TAAATCACCC 108644 .......... .......... .......... .......... .......... .......... 913 AAAGGAAAGT CCAAGTGACT ATAGGTGCTT CTGTTGAGCA CTCAAACAAG AAGGCGGCGC 108584 .......... .......... .......... .......... .......... .......... 913 AAGGCGGTGT AACAGATTTT TGAGTGTCAG CAGCTCTTAA AGATGAAAAT CTGAAAACTA 108524 .......... .......... .......... .......... .......... .......... 913 ATCCATCTTA TATCGTTCAC TTTATTTTCA ACATTTTTCC TGTTGCATTT TTCTTTATTT 108464 .......... .......... .......... .......... .......... .......... 913 TGTTCTACTT CTCTCTTCTC TTATAGTGAA GTGCCTAAGG TTCATTTTCT TAAATTGTAT 108404 .......... .......... .......... .......... .......... .......... 913 CTCCATATCT ATCCCTGTTC ATTATTTCTG GGCGTCAAGT ATTATGAGCA TATCAGCTGT 108344 .......... .......... .......... .......... .......... .......... 913 GAAGTACGCT CAAGTGGGAA TAGGCTAAAA GGAAGGTTAT ATGACGTTTA TATCTTAAAA 108284 .......... .......... .......... .......... .......... .......... 913 TTATCGCTCT CATTGGTCGA CTGGTGCAAA TCGATTGACT CCTGGAAATG TTCAAGTTAT 108224 .......... .......... .......... .......... .......... .......... 913 TTCATATCAC AGGCTTATAC AAGACTGCGA GAGATTATCG GATACTCCGT AAGTTATAAA 108164 .......... .......... .......... .......... .......... .......... 913 TCACTTCAAA TTTTTGTGGA GAAGAGAAAG AGGAATCCTC GCTCACAGAT TTGAATTGAA 108104 .......... .......... .......... .......... .......... .......... 913 AAAGCAAGCC CAGATTCTTT TTAGCTAGAC TCTATTGTCT GGTCCTTGTC TTTGTTAAGG 108044 .......... .......... .......... .......... .......... .......... 913 TTTCATTGTA ATCTTGTCTT TGTTAAGGTT TCATTGTAAT CTAAGTTTCA TTTGGCCGCC 107984 .......... .......... .......... .......... .......... .......... 913 TAAGGATAAA TTTGCTAAAG TCCTTTTCTT TGGACAAATT TTTGATCAAT GATAAGAAAG 107924 .......... .......... .......... .......... .......... .......... 913 ATAGCCTTCC ATATATTTTG ATATGGATCC CTAAGGTACT GAGAAAGGTA GGTTTTTTCA 107864 .......... .......... .......... .......... .......... .......... 913 CTTGGTTAGG AACAAGAGGG GTGATCTTGA TGGATGATAA AAGAATGAAG AGGAGAACTA 107804 .......... .......... .......... .......... .......... .......... 913 CTTATGTTGG GCGGTGTTTT ATGTGTAAGG GGTAGGGTGA TGACGCGAAT CGTCTTCTAG 107744 .......... .......... .......... .......... .......... .......... 913 ATTGTGCGAT AACTTCTCGG TTATGGTGGG AAATGTGGTG TTCGTTTGGT ACATTTGGGT 107684 .......... .......... .......... .......... .......... .......... 913 GATGCCCGTC ACTGTATAAG TAATGTTGCT CAACTGAAAT GGCGGAAGAT GAAGGAGGAG 107624 .......... .......... .......... .......... .......... .......... 913 ACACAAGGCG TTTAAGGTAT GCTCTTGCAC TTGTGTGGGT TTTGTGGAGA GTGAGAATTA 107564 .......... .......... .......... .......... .......... .......... 913 GGAGAGCTTT TGAAAGTGTA GTGTAATTTG CAAAGTTAAG GAATAGCCTC TTGTCCCTTA 107504 .......... .......... .......... .......... .......... .......... 913 TTGCTTTTTG GTGCACCCAT GAGGTTCCTG TATTATAGAA GGTTGAGTTC TGTAGAGAAC 107444 .......... .......... .......... .......... .......... .......... 913 TAAATGTTTT TGTATATATT TTCTACTTTC AGTATTCTAC GTTTATGCTG TTCTTTTGCC 107384 .......... .......... .......... .......... .......... .......... 913 CAACTATCAG TGAACTTTAG TTGATAGCCT TTAGCTATCA ACTATAGCTG GATTGACCAG 107324 .......... .......... .......... .......... .......... .......... 913 CCCAGCCTTA GTCTTTACTC TTCGGCATAT ATATGTTTGC ACTTCCCAAT GTGATGCCAA 107264 .......... .......... .......... .......... .......... .......... 913 ATGTGTAAAT TCGTTTTTTT GTCAGCTCCT TGCTGAGAAA ATGCCAGAGT TGCTTGATTT 107204 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CTCCT TGCTGAGAAA ATGCCAGAGT TGCTTGATTT 948 TGACAAGGAT CTTCTTCACT TGGAAGCTGC TTCTAAGGTA CCCTTGCTAT TTATTATGGT 107144 |||||||||| |||||||||| |||||||||| ||||||| TGACAAGGAT CTTCTTCACT TGGAAGCTGC TTCTAAG... .......... .......... 985 CTTCCTTTGC AGTACTACTG GTATTATGGT GAACTGAAAT GTTTGTTTAC TTCATATTAT 107084 .......... .......... .......... .......... .......... .......... 985 ATGGTTAGAT TCAACTGAAG TCTTTGGCTG AAGAAATGCA AGCAGTGAGT AAAGGTCTTG 107024 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AT TCAACTGAAG TCTTTGGCTG AAGAAATGCA AGCAGTGAGT AAAGGTCTTG 1037 AGAAAGTTGA ACAAGAACTT ACTGCATCCG ACAACGATGG TACAATA 106977 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGAAAGTTGA ACAAGAACTT ACTGCATCCG ACAACGATGG TACAATA 1084 hqPGS_C08SLe0082C24.1-_SGN-U324751+ (114583 114317,114022 113899,112904 112833,111283 111185,110510 110469,110374 110294,110205 110155,110075 109994,109897 109803,107238 107167,107075 106977) ******************************************************************************** EST sequence 42 -strand 880 n (File: SGN-U340881-) 1 TAAAAATACC AAACCTAACA AATTGATTCT CTGTACTCGA ATTCATCATG AATTACAAGT 61 TTCACCGCAG CTCCCAAACA CACATAAGAC ATCATTCGNC CATACTTTAT AAGAAAAAAG 121 AAAAAAAAGG CCAAATATAC CTCAAACTCT CATACATGGT ATGCAGATAC CATTCGTTAA 181 CTTTTGGGAC ATTGGCGCCC CTATAATTCA AAAATAGATC ATATATACCC TTAATACTAA 241 CGGACATACA CGAAGAGACG GAGTCTGAAT TTTCAATAAG GGGGTTCAAA ATCTATAAAA 301 TTAGACACAT GAATAAACGA AGGGAATTCG GATGAACCCC TTTGTTCAAG GTACATACAC 361 GTGTCATAAT CTTGTCCACT ACATACATGT GTCATAGTAT TATCCACTAT ATACATGTGT 421 CATAATATTA TCCACTACAT ACACGTGTCC AGAGGCGGAC TCACATGGTG TCCGCCGGGT 481 GATCGAGCAC CCATTAACTT CGTTACAGAA TATATATATC TATGTAGAAA TCGGTAGGTA 541 TTTGTATAAA ATTAACATAA AACACCCAAT GAATAAATGA TTTAGTTGGC CCAATAGCTC 601 CTAGATGGGT ACTTTAAGAC TTTTTAAGTG TTGTTGTACC AAGGTTCGAA TCTCACTCTT 661 AACACATGAT TCAACATTTA TTAAATATAA AATCGACAGA TGTGTTCCGA TTTAGTCTTT 721 CTTTACATTG AAGAACATAT ATACTCTATG CTCTAGTTTT TGAAGGGCAT AAACACCAAC 781 CGCACATATA TACTGTACCC TCGTGCCGAA TTCCTGCAGC CCGGGGGATC CACTAGTTCT 841 AGAGCGGCCN GCCACCGCGG TGGAGCTCCN NCCCCAAAAA Predicted gene structure (within gDNA segment 116010 to 125326): Exon 1 117587 117613 ( 27 n); cDNA 275 301 ( 27 n); score: 0.704 Intron 1 117614 118379 ( 766 n); Pd: 0.148 (s: 0), Pa: 0.607 (s: 0) Exon 2 118380 118405 ( 26 n); cDNA 302 323 ( 22 n); score: 0.692 Intron 2 118406 119483 (1078 n); Pd: 0.000 (s: 0), Pa: 0.469 (s: 0.59) Exon 3 119484 119527 ( 44 n); cDNA 324 364 ( 41 n); score: 0.591 Intron 3 119528 119805 ( 278 n); Pd: 0.000 (s: 0.59), Pa: 0.000 (s: 0.62) Exon 4 119806 119863 ( 58 n); cDNA 365 422 ( 58 n); score: 0.612 Intron 4 119864 119897 ( 34 n); Pd: 0.000 (s: 0.62), Pa: 0.996 (s: 0) Exon 5 119898 119927 ( 30 n); cDNA 423 450 ( 28 n); score: 0.500 Intron 5 119928 121407 (1480 n); Pd: 0.891 (s: 0), Pa: 0.000 (s: 0.90) Exon 6 121408 121606 ( 199 n); cDNA 451 650 ( 200 n); score: 0.849 Intron 6 121607 122703 (1097 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.56) Exon 7 122704 122845 ( 142 n); cDNA 651 791 ( 141 n); score: 0.627 MATCH C08SLe0082C24.1+ SGN-U340881- 0.736 526 0.598 C PGS_C08SLe0082C24.1+_SGN-U340881- (117587 117613,118380 118405,119484 119527,119806 119863,119898 119927,121408 121606,122704 122845) Alignment (genomic DNA sequence = upper lines): AATCAGCTCG TACAAATTCA AGAAAATGTG AAATTCATTA GAAGAACTCA AAATTAATCT 117646 ||| || | | |||| || | ||||| AATAAGGGGG TTCAAAATCT ATAAAAT... .......... .......... .......... 301 CAAATTCAGA ATACCCACAA AGCTAAAAAG GGATTGAACT ATATTTCAGG CGAAAAAATT 117706 .......... .......... .......... .......... .......... .......... 301 GGAACTTGAA ACCAAATAAA CTACAACAAG ACTGAAACAC ACACAAAACT CACATGGAAA 117766 .......... .......... .......... .......... .......... .......... 301 ATATATGCAT AAAACACCAA AAAAGGAAAT CTTTGAACTG AAGCAAACCG ACAGAAGCCG 117826 .......... .......... .......... .......... .......... .......... 301 TTGAGGAAGG ATTCGAGATG TGAGGTGAAG AACCGACAGT GTTGCCAGTA AAGTTTTCAC 117886 .......... .......... .......... .......... .......... .......... 301 CTGCGCTTTC CGATTTTAGT ATGAATTTTT TAATTTTTTT TTCTGATTAC GGATTTGAAC 117946 .......... .......... .......... .......... .......... .......... 301 TCTTTGGAGT TCAAAATTTT GGGAACGGAA AAAAAGGGGG CTGATTTTTT TATTTTAACA 118006 .......... .......... .......... .......... .......... .......... 301 TATGGTTGTT TTCATTTTTT GAAATTACAG AACCAACCCA ACACTTGTAT GAATAACTTT 118066 .......... .......... .......... .......... .......... .......... 301 TAGTTGTGTT TTATTTTGGA AAACTCCACG AGGAGGTATC CTTCGAAAAT AAATTTTTAT 118126 .......... .......... .......... .......... .......... .......... 301 TTTCTACTCA TAATTAGGGA TAAGATTATA ATGTGAAATA TTCAATGATG ATTAATGGAT 118186 .......... .......... .......... .......... .......... .......... 301 AGTGTTATAT CTGATTGATT ATTACTGACT TGAATAATAA TAAAAATATT AATTATAAAT 118246 .......... .......... .......... .......... .......... .......... 301 ATATAAATTA AATAAGGAAA CTTTCACATA TAGTAAATAA AAAATTCATA TTTGTATGTT 118306 .......... .......... .......... .......... .......... .......... 301 ATAGCAAAGT TTGCTTAATT CCGCTCCATA GCAAACATAG AAACTGTATG TATAATTCGC 118366 .......... .......... .......... .......... .......... .......... 301 TATACATATA CAGTTGAAGC AAATTGTATA AAACGAAGTG TATAAAACAA GAAAGAGAAA 118426 | | | | | || | || |||||||| .......... ...TAG-A-C ACAT-GAAT- AAACGAAGG. .......... .......... 323 GACACTTGGG CAGAGAACTG TATATAAACG AAGTTTATAA AATGAATTGT ATTATTATAA 118486 .......... .......... .......... .......... .......... .......... 323 GTGTATAAAA CGATTATATA CAATTTGAAT TTGTATAAAA TGAGAAAGAG AGAAAGACAA 118546 .......... .......... .......... .......... .......... .......... 323 AAGAGAATTG ACAAGGAATA TACAATTGAA TCGAATTATA TAAAACGAGA AAGAGAGAAA 118606 .......... .......... .......... .......... .......... .......... 323 TTAGATACAA CTTGAAAATT GTATAAAACG AGAAAGCGAG AAAGGCAAAA GAAACTGGGC 118666 .......... .......... .......... .......... .......... .......... 323 AGGAGAGTAT TTTTATTGTA TAATTATAAG TGTATAGGAC GAAGATATAT GTACTTGCAT 118726 .......... .......... .......... .......... .......... .......... 323 GTGTATATAT AATTTTCTCA CGATTTATAC AAACAGAAAC GCAATTTATA CATTTCGCTT 118786 .......... .......... .......... .......... .......... .......... 323 CTGTTTGTAT AAGTGAGAAA GGCGAAGGTG GCGAGCGAGA TTTGGAAGAG TGGCAAGCGA 118846 .......... .......... .......... .......... .......... .......... 323 GATCTAGAAG ACGGGAGAGA GGGGAACAAA ATATATATAT TTATACAATT TTCTCTGCTT 118906 .......... .......... .......... .......... .......... .......... 323 TATACAATTA GAAACAATTT TTATACTTTT GTGTTTGTAT AAAAAATGAG GAAGCGAGCG 118966 .......... .......... .......... .......... .......... .......... 323 AGAGATTGGA GGAGAGTGGC GAGCGAGATA TTTGGGAGAG AGGCGCATGA CAATTTTTTG 119026 .......... .......... .......... .......... .......... .......... 323 CAAACGTTTG CTATAGAGCA CAATTAAATC AAACCCTAGC TACTCTATTT ATTTTAGGTT 119086 .......... .......... .......... .......... .......... .......... 323 ATTAGTTTGT TATTATATAC AATTTCCCCA ATTAAATATG AGCTTGCGAT AATACTTTAC 119146 .......... .......... .......... .......... .......... .......... 323 TTTACTTTCG TTATAATACG AGCTTAGACA GCTAAGGTAA TGAGTATAAT TTAACTTTCT 119206 .......... .......... .......... .......... .......... .......... 323 CAAAACAATT GAGTGTGATG GCTTAATGGT CGAGATGAAT ATGTTGTACT AGATGATCAT 119266 .......... .......... .......... .......... .......... .......... 323 GTCTTTGAAT CCCTATTTAA ATCATGTCCA AATACATAAA TGGATCTCTA AACTTGTTGG 119326 .......... .......... .......... .......... .......... .......... 323 GGTTTTTCCC TCATATACCT TAATTATGTC ATTTTTCTAT TGAGTCATTG AACCACCCAT 119386 .......... .......... .......... .......... .......... .......... 323 AATTTGTTCT TTTAAAACAC TGTTGGTTGA TTTTGATCGG CTATTCTATT GTAAATGCCT 119446 .......... .......... .......... .......... .......... .......... 323 TTAATTTGTG TTCGAATTGT AATAATTTTG ATTGAAGGAA TGAAGACAAA CCGTTTTAGT 119506 ||| | || || || ||| || .......... .......... .......... .......GAA TTCGGATGAA CCCCTTT-GT 345 CTCATTTGTT TTCTAACGTG TTCAAATGAC TTAAGTGAAA CACAATTATT CTCGAACATT 119566 ||| || ||||| | -TCA-AGGTA CATACACGTG T......... .......... .......... .......... 364 TTCAGTATCA ATTGGACTAA TGACTTCTGG AACAACATAT GTATCCTCTA TCAATACCCC 119626 .......... .......... .......... .......... .......... .......... 364 TTACAAATCT GGTTCCACAT CAGACAACAG TGTTTATTTA AATGGAACAA ATTATGGGGG 119686 .......... .......... .......... .......... .......... .......... 364 TTCAATGATT CAATAAAAAA ATAACGTAGT TGAGGTACCC GAGGGAAAAA AACACAACAA 119746 .......... .......... .......... .......... .......... .......... 364 GTTTAAAGAT CTGTTTATGT ATTTGGCCTT AAATCGGTTA TCCAACATGT ACTTTTGAGC 119806 | .......... .......... .......... .......... .......... .........C 365 TTTATATGGG TGCACTA-GT ACTTGTGTGT TAGTTTTTTT GAAGATATAT ATGAATAAAT 119865 | || | | | ||||| | || ||||| |||| || | | ||||| ||| | | ATAATCT-TG TCCACTACAT ACATGTGTCA TAGTATTATC CACTATATAC ATGTGTCA.. 422 ATATATAACA TGATTTATTT TGAAATTAAC AGGTATACGT GCACCTCATT TATACATGTC 119925 ||| | || | || || |||| .......... .......... .......... ..TAATATTA TCCACT-ACA TACACGTGTC 449 AGGTCTGTCT CTAAAATCAG ATCTACAAAG TTACATCGTG TATGTTATTA ATATTATTGT 119985 -C........ .......... .......... .......... .......... .......... 450 GGTTGTTTGT AATCAATATT TTAATTAGAG TTGTTCAAAA TCAAATCGAA ATTGATAATT 120045 .......... .......... .......... .......... .......... .......... 450 CGAATGGAAA AAAAAGTTAT TGATTTATCA GTTTTGGGTT ATTGGTTTAG CGATTTAGAT 120105 .......... .......... .......... .......... .......... .......... 450 AAGGGTCTGA ATTTTTTTGT TATCGGTTAT CAGTTCTAAC AATTTGAAGT TTTTTCTCAA 120165 .......... .......... .......... .......... .......... .......... 450 CGATTTAACT GATAACCCGA TAGTAAATTA AATAATTATA TTTATACCAT TTTATGTATA 120225 .......... .......... .......... .......... .......... .......... 450 AAGTCCTTGA CTCAAAGTTT GCTTTCCTAC TTTTATTTTT GGTTATTCAA TGTATCTATC 120285 .......... .......... .......... .......... .......... .......... 450 TGCTTTTGAG TAAGATGTAA CTTGTGAACT GATATGCATA GTTTATTTGG TTTGTCATCT 120345 .......... .......... .......... .......... .......... .......... 450 TGTTTCTAAG TGATTTTTAA TATATATTTT TTGTGTCAAG TCTTAACCGG TAAAATTGAT 120405 .......... .......... .......... .......... .......... .......... 450 AACCAAATCG ATAGCGATAA AAAATCGATA AGCCAATATG TTAATAGTTC TATGACGATT 120465 .......... .......... .......... .......... .......... .......... 450 TAGCATCTCT ATACACCAAC AACCAATAAG TCAATCAATA AACTTTAAAT CGAACCGAAC 120525 .......... .......... .......... .......... .......... .......... 450 AGACCGATAT GCAGACCTAA TTCTAATGAC ACATAATCGA TTGTGGAATC TATACTAATG 120585 .......... .......... .......... .......... .......... .......... 450 CATAGCTGCA TTGATCTCTA AATTGAAGCA TCTTTTTTTC TGCTTAAATT ACCTCCAAAA 120645 .......... .......... .......... .......... .......... .......... 450 GGTACCAATG ATACCAAAAT TTCCAGGCTT GGTTGATGGG CCAAAGTGAC CATGTGATCG 120705 .......... .......... .......... .......... .......... .......... 450 CCTTTGTTGG GCTTTTAGCC CAGTTAAACT TAGGGCCCAA TGACCCATAT TCTATCAGCA 120765 .......... .......... .......... .......... .......... .......... 450 ACAAGAAGTA TTGTTGGTGA CTAGAGAATT TTAGAATGTA ATTGAACTAT TTTTGGCCAA 120825 .......... .......... .......... .......... .......... .......... 450 CAAAAAATAT AAATGATATA CAATATTTTA AATAAAACTA GAAAAAATTA ACATTATTCC 120885 .......... .......... .......... .......... .......... .......... 450 TCAATGAGTA TGATTGAAAA TGCATAGACG AGGCTATATA CAAAAATAGA GGAAGACTGG 120945 .......... .......... .......... .......... .......... .......... 450 ATCGCCTATT TGAATCTGGT TTGGTGTTAG AAATTCGTAG ATAAATCGAG TTGAAAAAAA 121005 .......... .......... .......... .......... .......... .......... 450 CGTTGTGACA CGTGTTTTAC GTATGAGAGC CAAATGATAT GGACTTTAAT TAACTTTTTT 121065 .......... .......... .......... .......... .......... .......... 450 TCAATATATA TTTTTCGTCA TATTGATATG AGAAACATTA CAATTTATAG TATTTTCCTC 121125 .......... .......... .......... .......... .......... .......... 450 GTAGTTTTAA AAAACCAAAA GATTTTAAGT TTGAAATATA AAATTAATCC AATCAAATTT 121185 .......... .......... .......... .......... .......... .......... 450 AGTTTTGAAA GTCAATCAAA GTGACTCTCA AAAAAGCAAA ACATGATAGT ATTTTGAAAT 121245 .......... .......... .......... .......... .......... .......... 450 AAATTAGAGT GTTTTTTAAT TGTTTTATCT CATTTGTTAG TATTTAGAAA TTACGCGAAC 121305 .......... .......... .......... .......... .......... .......... 450 ATTCTAATCG TTATTCATTG AGTAATATAC CTGATTATAA GACGATTAAT ATTGAGATTG 121365 .......... .......... .......... .......... .......... .......... 450 TGAGACAAAA GGAAGAAAAG ATAAATTTAT AGTACTAAGG ACAGGGGTGG ACCCACATGG 121425 || || || || ||||||| .......... .......... .......... .......... ..AGAGGCGG ACTCACATGG 468 TGTCCGCCAG GTGCTCGAGC ACCCATTAAC TTCGTTACGA AATATATATA TCTATGTAGA 121485 |||||||| | ||| |||||| |||||||||| |||||||| |||||||||| |||||||||| TGTCCGCCGG GTGATCGAGC ACCCATTAAC TTCGTTACAG AATATATATA TCTATGTAGA 528 AATTGGTAGG TATTTGTATA AAATTAACAT AGAGCACACA ATGAATAAAT CATATAGTTG 121545 ||| |||||| |||||||||| |||||||||| | | ||| || |||||||||| || |||||| AATCGGTAGG TATTTGTATA AAATTAACAT AAAACACCCA ATGAATAAAT GATTTAGTTG 588 GCCCAAT-GA TTCTAGGATT GACAC-TTAA AACTCTTTTA ATGTTATTGT ACGAAGGTTC 121603 ||||||| | | ||| ||| | || |||| ||| ||| | |||| |||| || ||||||| GCCCAATAGC TCCTA-GATG GGTACTTTAA GACTTTTTAA GTGTTGTTGT ACCAAGGTTC 647 GAAATCCGCC ACTGACTAAG GATCACGATG GAGTCATGGA GATCATTATT TGGATATATA 121663 ||| GAA....... .......... .......... .......... .......... .......... 650 ACAAGCAAAT GCAACTTAAA TTCAATTTTC TTATATTCAA ATTGCAATTA ATTAAATTAT 121723 .......... .......... .......... .......... .......... .......... 650 GATTAAAAAA TCATTTTATA AGTAAAAATA CTTCTATAAA AGGAAATTTT ATCCTCAAAA 121783 .......... .......... .......... .......... .......... .......... 650 TTCAAATATT AAACTTCAAA TTAACAACAC ATGCAACCTT ATACAAAACA AATCAACTAG 121843 .......... .......... .......... .......... .......... .......... 650 GATACCTCTC CCAATAATTA AATTGGTGGT CAATAAAATT GTACTCCATA ATTATGAATT 121903 .......... .......... .......... .......... .......... .......... 650 GTAGTTGGCA ATAATAAATA TGCATTATAT TGTCCTCATC GACTAGTCAA TGGAACATTT 121963 .......... .......... .......... .......... .......... .......... 650 ATGAAACCAA AAAACATGAA TCAATGTTCT CTACTTGCAC CAAAGTTTTT ATGAATGAGA 122023 .......... .......... .......... .......... .......... .......... 650 AATAATATTA GATTTGTCCG TTAAGGATTT TAAATGTTTT AAATATTGTA CTTGGGTATA 122083 .......... .......... .......... .......... .......... .......... 650 AATGAGCACT TTTTTTTATC AGTAAATTTT TATCGTATTT CTGATGATTA TAGATTTTCA 122143 .......... .......... .......... .......... .......... .......... 650 TTCTCAGAAA CATCACTTGG AAATAGTTGT TACTCCATCC GCTCACCCAA TTATAACATC 122203 .......... .......... .......... .......... .......... .......... 650 GATCTTAATA AAAATACATA AAAATTATTT AGTTCAAATG GTTTCCCTCA CTTTATATTT 122263 .......... .......... .......... .......... .......... .......... 650 TTATCATTTT TTTCTATTAC CAATTAATCA GTTTTGTTAT AAAATCGTTG ATCGTCAACA 122323 .......... .......... .......... .......... .......... .......... 650 ATTATAACTC TATATTGATT GTCATACGAT TGTTAAGATG GAGTTTCAGC GAGGTTAAAA 122383 .......... .......... .......... .......... .......... .......... 650 ATTAACTCGT TGGTATAACC ATGCATTATT TAAATTTTAT TTGAGATGAT TTTATATATT 122443 .......... .......... .......... .......... .......... .......... 650 AATGGTAATT AATTTAGTCT TGAGGAGTAA AATAAAATCG TTATAGGTTT TAAAGTGTTC 122503 .......... .......... .......... .......... .......... .......... 650 CTAACATCAG AATGGTGAAA TCTTTATGAA GTTTTTAAAG ACATATAATA CCATTTAAAT 122563 .......... .......... .......... .......... .......... .......... 650 TAGAAAAAAA CATAAATATA CTTTTGAATT ATCGTAAATG ATATGTAAAT ATCTTTCGTT 122623 .......... .......... .......... .......... .......... .......... 650 AAATTTTTGG GACATTGGTG CTCTTGCCGT CCAAAAACTA GAAATAATAT ATACCCTTTA 122683 .......... .......... .......... .......... .......... .......... 650 TACTAAGGGA CACACATGTG TCATAATCTT ATCCACCAAT TGTATATTTA TAGACGTAGA 122743 || | |||| | | || | | ||||| | | || | .......... .......... TCTCACTCTT AACACATGAT TCAACATTTA T-TAAATATA 689 AAATTGCGTC TTGTGTTCCT ATTTAGTCTT CCTTTAGAGT TAACGGCATA TAAGCTTTAG 122803 |||| | |||||||| |||||||||| ||||| | | || |||| || || || AAATCGACAG ATGTGTTCCG ATTTAGTCTT TCTTTACATT GAAGAACATA TATACTCTAT 749 TTTTTTTTTT TTAAACAGCA GGAGCATCAA TGTCCCAAAA AT 122845 | | ||| || || ||| | || ||| | || | || GCTCTAGTTT TTGAAGGGCA TAAACACCAA CCGCACATAT AT 791 hqPGS_C08SLe0082C24.1+_SGN-U340881- (117587 117613,118380 118405,119484 119527,119806 119863,119898 119927,121408 121606) ******************************************************************************** EST sequence 34 -strand 874 n (File: SGN-U315517-) 1 TCGAGTTTTT TTTTTTCTTT TTTTTTTTTT TTTTTTTTCA TAAATGTAAC AATCTTATAT 61 TATATTGAAT TTGAAATAGA TAGTTGAAAT TACACATAGA GTTCATCGTA AAACTAGTTT 121 GAACTCATAT TATTTATAAT AAAATAGGTA TCTATTGAGC ATTAATACCA CAGTAAGGTT 181 TAGCAGTGCC ATAAGCCATG GGGCTAGCAC CAGTACTGTA GTACATAACT AAATCAAAAT 241 TATCAAAAGG CTTGTATTGT AAAGGATGTG TTTCATCCAC CAATTCCTCA GGTATATCTG 301 TTATTCCTTT ATTGAATGTG AATAACGCCA ATGTATACCT TTGCTTATCC TCTTTCATCA 361 ACACTTGGTG TCTTGGTGAA TATATTCTTC CATTACTCCA TGCCTACGCT CATTAATAAC 421 ATATATATAT ATATTAAGGT CAAATACATA AACAGATCCT TAAATTAGTT GGATTTTTTT 481 CCTCATCATT AAACCACCCA TAATTTATTC CTTTAAAATA CTGTTGGTTG ATTTTGATCG 541 ACTTTTCTAT TGTAAATGTC TCCAATTGTG TTCGAATTGT AATAATTTTG ATTGAACGAA 601 TGAACACAAA CCGTGTTAAT CTCATTTGTT TTCTAATGTC TTCAAATCAC TTAAGTGAAA 661 CACAATTATT CTCGAACATT TTCACTATCA ATTGGACTAA TGAGTTCAGG AACAACATAT 721 GTATCTTCTA TCAATACCCC TCACGAATAT GGTTCCACAT CAGACAACAG TGTTTGTTTA 781 AACGGAACAG ATTATGGGGG TTCAATGATT CAATAAGAAA ATGACATAGT TGAGATACCT 841 GAGGGAAAAA ACTCAACAAA TTTAGAAATC TCAT Predicted gene structure (within gDNA segment 113192 to 120882): Exon 1 119280 119339 ( 60 n); cDNA 426 485 ( 60 n); score: 0.750 Intron 1 119340 119370 ( 31 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.92) Exon 2 119371 119758 ( 388 n); cDNA 486 871 ( 386 n); score: 0.905 PPA cDNA 38 6 MATCH C08SLe0082C24.1+ SGN-U315517- 0.884 448 0.513 C PGS_C08SLe0082C24.1+_SGN-U315517- (119280 119339,119371 119758) Alignment (genomic DNA sequence = upper lines): TATTTAAATC ATGTCCAAAT ACATAAATGG ATCTCTAAAC TTGTTGGGGT TTTTCCCTCA 119339 ||| || || | | ||||| ||||||| | ||| |||| | ||||| | |||| ||||| TATATATATT AAGGTCAAAT ACATAAACAG ATCCTTAAAT TAGTTGGATT TTTTTCCTCA 485 TATACCTTAA TTATGTCATT TTTCTATTGA GTCATTGAAC CACCCATAAT TTGTTCTTTT 119399 ||||| ||| |||||||||| || ||| ||| .......... .......... .......... .TCATTAAAC CACCCATAAT TTATTCCTTT 514 AAAACACTGT TGGTTGATTT TGATCGGCTA TTCTATTGTA AATGCCTTTA ATTTGTGTTC 119459 |||| ||||| |||||||||| |||||| || |||||||||| |||| || | | |||||||| AAAATACTGT TGGTTGATTT TGATCGACTT TTCTATTGTA AATGTCTCCA A-TTGTGTTC 573 GAATTGTAAT AATTTTGATT GAAGGAATGA AGACAAACCG TTTTAGTCTC ATTTGTTTTC 119519 |||||||||| |||||||||| ||| |||||| | |||||||| | ||| |||| |||||||||| GAATTGTAAT AATTTTGATT GAACGAATGA ACACAAACCG TGTTAATCTC ATTTGTTTTC 633 TAACGTGTTC AAATGACTTA AGTGAAACAC AATTATTCTC GAACATTTTC AGTATCAATT 119579 ||| || ||| |||| ||||| |||||||||| |||||||||| |||||||||| | |||||||| TAATGTCTTC AAATCACTTA AGTGAAACAC AATTATTCTC GAACATTTTC ACTATCAATT 693 GGACTAATGA CTTCTGGAAC AACATATGTA TCCTCTATCA ATACCCCTTA CAAATCTGGT 119639 |||||||||| ||| ||||| |||||||||| || ||||||| |||||||| | | ||| |||| GGACTAATGA GTTCAGGAAC AACATATGTA TCTTCTATCA ATACCCCTCA CGAATATGGT 753 TCCACATCAG ACAACAGTGT TTATTTAAAT GGAACAAATT ATGGGGGTTC AATGATTCAA 119699 |||||||||| |||||||||| || |||||| |||||| ||| |||||||||| |||||||||| TCCACATCAG ACAACAGTGT TTGTTTAAAC GGAACAGATT ATGGGGGTTC AATGATTCAA 813 TAAAAAAATA ACGTAGTTGA GGTACCCGAG GGAAAAAAAC ACAACAAGTT TAAAGATCT 119758 ||| ||||| || ||||||| | |||| ||| || ||||||| |||||| || || | |||| TAAGAAAATG ACATAGTTGA GATACCTGAG GG-AAAAAAC TCAACAAATT TAGAAATCT 871 hqPGS_C08SLe0082C24.1+_SGN-U315517- (119280 119339,119371 119758) ******************************************************************************** EST sequence 11 +strand 756 n (File: SGN-U326156+) 1 CAAAATAAAC CAAAAAAAAG TNCTATTAAG TAAGGCTGTT TAAAATCGAA TCAAAATCGA 61 TAAGTTGAAT CGATAAAAAA GTTATTGGTT TATAGTATTG GGTTATTGGT TTAGTGATTT 121 TGATAATGGT TTTGATTTTT TTTTGTTATC GGGTTATCGA TTCTTAACGG TTTAAAGTTT 181 TTTTTTTTAA CGGATTAACC GATAACCCGA TAGTAAATTA AATATTTATA TTTATACCAT 241 TTTTGTATAT AAAGTTCTCG ACTTGGAGTT TAATTTCCTA CTTTTATTTT TGGTTGTCTC 301 AAACACTTGA TTATTCTACG ATGTAAAAGT GCTTGCTTTT GAGCAAGATG TAACTTGTGA 361 ACTCAAGTGC ATGGTTTATT TGGTTTGTCA CCTTGTTTCT ACGTGATTTT CAATATTTTT 421 TCTTTTGGGT CAAATCTTAA CGGTTAAACC GATAACCGAA CAGATAACGA TCAAAAATCG 481 ATAAACCAAT AACCGATAAG CCAATATCTT AATGGTTCTA TAATGGTTTA GCATCACTAC 541 AAACCGATAA CTAATAAGCC AACCCGATAA ACTTTAAAAT CGAACCGAAC CGGCCGATAC 601 ACAGCCCTAG TATGACTTGT GCTTGTTTTA CATTGTGGTG CCTCAGTAGG GAGGTGGCTC 661 CTTTCATCAA TTTATGATTT TCACTATCAA GTCCGTTTGG TACTTCTATC AGTCGTATAA 721 AGTTAGGAAG ACATGTCTCT TGGATCTATA ATATAT Predicted gene structure (within gDNA segment 117576 to 124612): Exon 1 120017 120443 ( 427 n); cDNA 37 491 ( 455 n); score: 0.686 MATCH C08SLe0082C24.1+ SGN-U326156+ 0.686 427 0.565 C PGS_C08SLe0082C24.1+_SGN-U326156+ (120017 120443) Alignment (genomic DNA sequence = upper lines): TGTTCAAAAT CAAATCGAAA TTGATAATTC GAATGGAAAA AAAAGTTATT GATTTATCAG 120076 |||| ||||| | |||| ||| | ||||| | |||| || || |||||||||| | ||||| || TGTTTAAAAT CGAATCAAAA TCGATAAGTT GAATCGATAA AAAAGTTATT GGTTTAT-AG 95 TTTTGGGTTA TTGGTTTAGC GATTTAGATA AGGGTC-TGA ATT-TTTTTG TTATC-GGTT 120133 | |||||||| ||||||||| ||||| |||| | ||| ||| || |||||| ||||| |||| TATTGGGTTA TTGGTTTAGT GATTTTGATA ATGGTTTTGA TTTTTTTTTG TTATCGGGTT 155 ATCAGTTC-T AACAATTTGA AG--TTTTTT CTCAACGATT TAACTGATAA CCCGATAGTA 120190 ||| ||| | ||| ||| | || |||||| | |||| | |||| ||||| |||||||||| ATCGATTCTT AACGGTTTAA AGTTTTTTTT TTTAACGGAT TAACCGATAA CCCGATAGTA 215 AATTAAATAA TTATATTTAT ACCA-TTTTA TGTATAAAGT CCTTGACTCA AAGTTTGCTT 120249 ||||||||| |||||||||| |||| |||| | |||||||| || |||| ||||| || AATTAAATAT TTATATTTAT ACCATTTTTG TATATAAAGT TCTCGACTTG GAGTTTAATT 275 TCCTACTTTT ATTTTTGGTT AT-TC--A-A --TG--TA-T CT---A---- ----T-C-TG 120287 |||||||||| |||||||||| | || | | || || | || | | | || TCCTACTTTT ATTTTTGGTT GTCTCAAACA CTTGATTATT CTACGATGTA AAAGTGCTTG 335 CTTTTGAGTA AGATGTAACT TGTGAACTGA TATGCATAGT TTATTTGGTT TGTCATCTTG 120347 |||||||| | |||||||||| |||||||| | ||||| || |||||||||| ||||| |||| CTTTTGAGCA AGATGTAACT TGTGAACTCA AGTGCATGGT TTATTTGGTT TGTCACCTTG 395 TTTCTAAGTG ATTTTTAATA TATATT-TTT TGTGTCAAGT CTTAACCGGT AAAATTGATA 120406 |||||| ||| ||||| |||| | | || ||| || ||||| | ||||| |||| ||| |||| TTTCTACGTG ATTTTCAATA TTTTTTCTTT TGGGTCAAAT CTTAA-CGGT TAAACCGATA 454 ACCAAATCGA TAGCGATAAA AAATCGATAA GCCAATA 120443 ||| || || || |||| || |||||||||| |||||| ACCGAACAGA TAACGATCAA AAATCGATAA ACCAATA 491 hqPGS_C08SLe0082C24.1+_SGN-U326156+ (120017 120443) ******************************************************************************** EST sequence 2 +strand 849 n (File: SGN-U342776+) 1 TTTGATACAA TGGTGGAGCT CCTGATACCG TGGAGCGGCC TACAACTAGG GGAGCCGTCT 61 GAGATGTAGG AGTTCCGCAC GAGGCTTGAA TTCCCCACAC ACACTGAAGA CAACATTGCA 121 GTTATGGCGG CACTTGAAGA ACATCAACAC CATCATCAAC AACAAGAACA AGAAGACCCC 181 ATTTCCTCTT TATCCTTAAA ACCCAACGAT AAACACTTGG AAAAGATTTT CTCCTCATAT 241 TTGGGTCTAA GTCTCGCTGT CTTTCTTGGG TCTTTACCAA GAAATGCAGT TTCTTTGGTT 301 GGGAGACTTC AGAACCGTAA CAAGGAGCTA ACTTTTCAGC TTATTGACAC AGAGGAGCAG 361 TTAAAGCAGC TACTTTTCAG GAGAAAAGAG GATTCAAAGG CAAATGCAAC AGTTGTGGAA 421 ATCTTTGCAA GTCATAGACA TGCCTGGCAT CAAGAATAGA AGAGGTTGTT ACAGCAGATC 481 GACGAGTGTG ATGAATAAAT TGCTGATTTA AGAGGGAGAG CTGAGCAGTT TGAAACGATG 541 GAAAGTGAGT TGAGGGCTAA TATTGAGGAC TTGAAAAGGG AGATTAGTGA AAGAGATGAA 601 ATGTTGAACT TTATGAATAC AACGGGTTGT GAGATGGAGA ATANTACTAA TGGAAATGGG 661 GGGAGAGAAG CAAATGGAGA TTGTTTTTGA ACAAATGGAA CTGAGGGAAT GGGATAATTT 721 GCATACCCCA AAGGCATGTT TTTTTTTGTT TCGCCATGGA AAAAGACTTT TCTTTTTTAA 781 AGGAAATACC AAGGCTAAAG CAAATCATTG GGGTTAAGGA CAAAAAAATC GGGTTTACCA 841 AATAAACTT Predicted gene structure (within gDNA segment 127596 to 130339): Exon 1 129576 130223 ( 648 n); cDNA 85 734 ( 650 n); score: 0.923 MATCH C08SLe0082C24.1+ SGN-U342776+ 0.923 648 0.763 C PGS_C08SLe0082C24.1+_SGN-U342776+ (129576 130223) Alignment (genomic DNA sequence = upper lines): CTTTTTTTCC CCACACACAC TGAAGACAAC TTTCCAGTAA TGGCGGCACA TGAAGAACAA 129635 ||| |||| |||||||||| |||||||||| || |||| | ||||||||| ||||||||| CTTGAATTCC CCACACACAC TGAAGACAAC ATTGCAGTTA TGGCGGCACT TGAAGAACAT 144 CAACACCATC ATCAACAACA AGAACAAGAA GACCCCATTT CCTCTTTATC CTTAAAACCC 129695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACACCATC ATCAACAACA AGAACAAGAA GACCCCATTT CCTCTTTATC CTTAAAACCC 204 AACGATAAAC ACTTGGAGAA GATTTTCTCC TCATATTTGG GTCTAAGTTT CGCTGTCTTT 129755 |||||||||| ||||||| || |||||||||| |||||||||| |||||||| | |||||||||| AACGATAAAC ACTTGGAAAA GATTTTCTCC TCATATTTGG GTCTAAGTCT CGCTGTCTTT 264 CTTGGGTCTT TACCAAGAAA TGCAGTTTCT TTGGTTGGGA GACTTCAGAA CCGTAACAAG 129815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGTCTT TACCAAGAAA TGCAGTTTCT TTGGTTGGGA GACTTCAGAA CCGTAACAAG 324 GAGCTAACTT TTCAGCTTAT TGACACAGAG GAGCAGTTAA AGCAGCTACT TTTCAGGAGA 129875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTAACTT TTCAGCTTAT TGACACAGAG GAGCAGTTAA AGCAGCTACT TTTCAGGAGA 384 AAAGAGGATT CAAAGGCAAA TGCAAGAGTT GTGGAAATCT TTGCAAGTCA TAGACATGCC 129935 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAGAGGATT CAAAGGCAAA TGCAACAGTT GTGGAAATCT TTGCAAGTCA TAGACATGCC 444 TGGCAGCAAG AAGAGAAGAG GTTGTTACAG CAGATCGACG AGTGTGATGA AGAAATTGCT 129995 ||||| |||| || ||||||| |||||||||| |||||||||| |||||||||| | |||||||| TGGCATCAAG AATAGAAGAG GTTGTTACAG CAGATCGACG AGTGTGATGA ATAAATTGCT 504 GAGTTAAGAG GGAGAGCTGA GCAGTTTGAG ACGATGGAAA GTGAGTTGAG GGCTAATATT 130055 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GATTTAAGAG GGAGAGCTGA GCAGTTTGAA ACGATGGAAA GTGAGTTGAG GGCTAATATT 564 GAGGACTTGA AAAGGGAGAT TAGTGAAAGA GATGAAATGT TGAACTTTAT GAGTAGAAGG 130115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || || || | GAGGACTTGA AAAGGGAGAT TAGTGAAAGA GATGAAATGT TGAACTTTAT GAATACAACG 624 GGTTGTGAGA TGGAGAATAG TACTAGTGGA GATGGTGGGA GTGATGGTAT TGGAGATTG- 130174 |||||||||| ||||||||| ||||| |||| |||| |||| | || | | ||||||||| GGTTGTGAGA TGGAGAATAN TACTAATGGA AATGGGGGGA GAGAAGCAAA TGGAGATTGT 684 TTATGCTGAA ATGGGTTTGA -GGTTTGGGA AAGTTGGGAT ATCTGAAGGG 130223 || || || |||| ||| || ||||| | || | || | | || || TTTTGAACAA ATGGAACTGA GGGAATGGGA TAATTTGCAT ACCCCAAAGG 734 hqPGS_C08SLe0082C24.1+_SGN-U342776+ (129576 130223) Total number of EST alignments reported: 41 ________________________________________________________________________________ Predicted gene locations (17) in segment 1 to 130339: PGL 1 (+ strand): 3544 6056 AGS-1 (3544 3650,5617 5633,6031 6056) SCR (e 0.874 d 0.000 a 0.000,e 0.765 d 0.900 a 0.000,e 0.731) Exon 1 3544 3650 ( 107 n); score: 0.874 Intron 1 3651 5616 (1966 n); Pd: 0.000 Pa: 0.000 Exon 2 5617 5633 ( 17 n); score: 0.765 Intron 2 5634 6030 ( 397 n); Pd: 0.900 Pa: 0.000 Exon 3 6031 6056 ( 26 n); score: 0.731 PGS (3544 3650,5617 5633,6031 6056) SGN-U318850- 3-phase translation of AGS-1 (+strand): . . . . . . 3544 AAAAAAAAGAGGAAAAAAAGAAATTGAAATAGAGGCCATAGAGAGGTGCACATCAGCTCC K K K R K K R N - N R G H R E V H I S S K K R G K K E I E I E A I E R C T S A P K K E E K K K L K - R P - R G A H Q L . . . . . : . 3604 TCTATGATCCTCCTTTATATATATATATATATATATTGATTTGTATT : TTTTATGTTTTAA S M I L L Y I Y I Y I Y - F V F : F M F - L - S S F I Y I Y I Y I D L Y : F L C F N L Y D P P L Y I Y I Y I L I C I : F Y V L . : . . 5630 CTAT : TGCACTCAACAATTATAATTATGAAC L : L H S T I I I M N Y : C T Q Q L - L - T I : A L N N Y N Y E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 17997 8983 AGS-1 (17997 17973,16119 16081,15508 15479,12264 12253,11568 11538,10717 10705,9584 9539,9225 8983) SCR (e 0.800 d 0.000 a 0.943,e 0.641 d 0.711 a 0.000,e 0.700 d 0.000 a 0.768,e 0.750 d 0.000 a 0.365,e 0.677 d 0.000 a 0.000,e 0.769 d 0.509 a 0.690,e 0.500 d 0.112 a 0.974,e 0.897) Exon 1 17997 17973 ( 25 n); score: 0.800 Intron 1 17972 16120 (1853 n); Pd: 0.000 Pa: 0.943 Exon 2 16119 16081 ( 39 n); score: 0.641 Intron 2 16080 15509 ( 572 n); Pd: 0.711 Pa: 0.000 Exon 3 15508 15479 ( 30 n); score: 0.700 Intron 3 15478 12265 (3214 n); Pd: 0.000 Pa: 0.768 Exon 4 12264 12253 ( 12 n); score: 0.750 Intron 4 12252 11569 ( 684 n); Pd: 0.000 Pa: 0.365 Exon 5 11568 11538 ( 31 n); score: 0.677 Intron 5 11537 10718 ( 820 n); Pd: 0.000 Pa: 0.000 Exon 6 10717 10705 ( 13 n); score: 0.769 Intron 6 10704 9585 (1120 n); Pd: 0.509 Pa: 0.690 Exon 7 9584 9539 ( 46 n); score: 0.500 Intron 7 9538 9226 ( 313 n); Pd: 0.112 Pa: 0.974 Exon 8 9225 8983 ( 243 n); score: 0.897 PGS (9225 8983) SGN-U324885+ PGS (17997 17973,16119 16081,15508 15479,12264 12253,11568 11538,10717 10705,9584 9539,9225 9061) SGN-U335242- 3-phase translation of AGS-1 (-strand): . . . : . . . 17997 TGTGATAATTGGAAAACCAGCTTCT : CACTCAACAAATGAAATCGGACAAATTGGGATGGA C D N W K T S F : S L N K - N R T N W D G V I I G K P A S : H S T N E I G Q I G M E - - L E N Q L L : T Q Q M K S D K L G W . : . . . : . : . 16084 AAAA : TGCATTATAAAGACTTATTAGTTAGCAATA : ATATTACATGAT : GTTAGCCCACCATG K : M H Y K D L L V S N : N I T - : C - P T M K : C I I K T Y - L A I : I L H D : V S P P - K N : A L - R L I S - Q - : Y Y M M : L A H H . . : . : . . . 11554 ATCTGGCTTTCAATTGA : ATATGGATTACAG : ACTGAGATCTGAGATATACAAATGAAGTGA I W L S I E : Y G L Q : T E I - D I Q M K - S G F Q L : N M D Y R : L R S E I Y K - S E D L A F N - : I W I T : D - D L R Y T N E V . . : . . . . 9554 AAAGATACCTCTCCTG : GGTGGCCCAGTGGTTTGGACTTGGGACTTCCATGTTGGAGATCT K D T S P : G W P S G L D L G L P C W R S K I P L L : G G P V V W T W D F H V G D L K R Y L S W : V A Q W F G L G T S M L E I . . . . . . 9181 CAAGTTCAAAACCCCTTGCCAGCGAAAGGAAGGGGAGTTGCCTTCTGGGTCGAGCTCATC Q V Q N P L P A K G R G V A F W V E L I K F K T P C Q R K E G E L P S G S S S S S S S K P L A S E R K G S C L L G R A H . . . . . . 9121 GCACCGGGCTTGCTTAGTGCGGGTTATCTCTCCTATGTGGTTTGCAAGCTATTGCATAGG A P G L L S A G Y L S Y V V C K L L H R H R A C L V R V I S P M W F A S Y C I G R T G L A - C G L S L L C G L Q A I A - . . . . . . 9061 AGCAGGGGTTTAACCCTGTGCACACCTAAAGGGTAGCGGCTACAGGTTTCCCTTGCCATC S R G L T L C T P K G - R L Q V S L A I A G V - P C A H L K G S G Y R F P L P S E Q G F N P V H T - R V A A T G F P C H . . 9001 AAAAAAGAAAAAGATACAA K K E K D T K K K K I Q Q K R K R Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-2_AGS-1_PPS_1 (9554 9539,9225 9026) (frame '1'; 213 bp, 71 residues) 1 KDTSPGWPSG LDLGLPCWRS QVQNPLPAKG RGVAFWVELI APGLLSAGYL SYVVCKLLHR 61 SRGLTLCTPK G- >C08SLe0082C24.1-_PGL-2_AGS-1_PPS_2 (9559 9539,9225 9049) (frame '2'; 195 bp, 65 residues) 1 SEKIPLLGGP VVWTWDFHVG DLKFKTPCQR KEGELPSGSS SSHRACLVRV ISPMWFASYC 61 IGAGV- PGL 3 (+ strand): 19009 22413 AGS-1 (19009 19092,20279 20452,20841 20986,22116 22413) SCR (e 1.000 d 0.960 a 0.990,e 1.000 d 0.998 a 0.996,e 1.000 d 0.998 a 0.885,e 0.901) Exon 1 19009 19092 ( 84 n); score: 1.000 Intron 1 19093 20278 (1186 n); Pd: 0.960 Pa: 0.990 Exon 2 20279 20452 ( 174 n); score: 1.000 Intron 2 20453 20840 ( 388 n); Pd: 0.998 Pa: 0.996 Exon 3 20841 20986 ( 146 n); score: 1.000 Intron 3 20987 22115 (1129 n); Pd: 0.998 Pa: 0.885 Exon 4 22116 22413 ( 298 n); score: 0.901 PGS (19009 19092,20279 20452,20841 20986,22116 22413) SGN-U340816+ 3-phase translation of AGS-1 (+strand): . . . . . . 19009 CCGGGTGGAAATAAATGGGTATGAAGAATATAGTAACCGTGAATACAGATCAGCTGGATG P G G N K W V - R I - - P - I Q I S W M R V E I N G Y E E Y S N R E Y R S A G C G W K - M G M K N I V T V N T D Q L D . . . : . . . 19069 TACCGAGGAGTATTCAGTTATTGA : ACGAGATCTGGAACAGGAAGGAGAATCAGAGTCTCT Y R G V F S Y - : T R S G T G R R I R V S T E E Y S V I E : R D L E Q E G E S E S L V P R S I Q L L : N E I W N R K E N Q S L . . . . . . 20315 TAGGCTGGAAGGTGATATAGGTGGTGGATTATTTATGGAACGATATATATCTTTGCCAAA - A G R - Y R W W I I Y G T I Y I F A K R L E G D I G G G L F M E R Y I S L P K L G W K V I - V V D Y L W N D I Y L C Q . . . . . . 20375 AGACAACTCCAAGGTTTTCCGCATTGATTCTGGAATTGTAGCTCGTGGAGTTGGTGCTGG R Q L Q G F P H - F W N C S S W S W C W D N S K V F R I D S G I V A R G V G A G K T T P R F S A L I L E L - L V E L V L . . : . . . . 20435 TTCTGGAGGATTTTCTAG : GCTTGTGTGCTTGCGTGTGCATCCAATGTTCACGTTGTTGCA F W R I F - : A C V L A C A S N V H V V A S G G F S R : L V C L R V H P M F T L L H V L E D F L : G L C A C V C I Q C S R C C . . . . . . 20883 CCCAACTGAATCATACGTGTCCTTTACTTCCCTCAATGGGTCCAAGCATGAACTTTGGCC P N - I I R V L Y F P Q W V Q A - T L A P T E S Y V S F T S L N G S K H E L W P T Q L N H T C P L L P S M G P S M N F G . . . . . : . 20943 AGAATCTGGAGAACAAGTGTTTGAAGGAGATCTTCGCCCAAAGG : GTGAATGGATGCTTGT R I W R T S V - R R S S P K G : - M D A C E S G E Q V F E G D L R P K : G E W M L V Q N L E N K C L K E I F A Q R : V N G C L . . . . . . 22132 TGATAGATGTCTTGGTCTGGGATTAGTCAATCGATTCAACATCGATCAAGTACACAAATG - - M S W S G I S Q S I Q H R S S T Q M D R C L G L G L V N R F N I D Q V H K C L I D V L V W D - S I D S T S I K Y T N . . . . . . 22192 TATGGTGCATTGGGGTACCGGAACAGTGAATCTAGAGCTCTGGTCTGAAGAAAGGCCTGT Y G A L G Y R N S E S R A L V - R K A C M V H W G T G T V N L E L W S E E R P V V W C I G V P E Q - I - S S G L K K G L . . . . . . 22252 CTCAAAGGACTCACCTCTTAAAATATCTCACGAGTACGAAGTGCAAAAGATAGCCTAAAA L K G L T S - N I S R V R S A K D S L K S K D S P L K I S H E Y E V Q K I A - N S Q R T H L L K Y L T S T K C K R - P K . . . . . . 22312 CTCTCACCCAGCATTGACCACTTGTTCAATGAGCATTTTCTGGGATTGAAGAACAGTATA L S P S I D H L F N E H F L G L K N S I S H P A L T T C S M S I F W D - R T V Y T L T Q H - P L V Q - A F S G I E E Q Y . . . . . 22372 CATTTCCACAAGCTATGGCCTTATGTAGATGGTGTTAAGTCA H F H K L W P Y V D G V K S I S T S Y G L M - M V L S T F P Q A M A L C R W C - V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-3_AGS-1_PPS_1 (19010 19092,20279 20452,20841 20986,22116 22309) (frame '2'; 594 bp, 198 residues) 1 RVEINGYEEY SNREYRSAGC TEEYSVIERD LEQEGESESL RLEGDIGGGL FMERYISLPK 61 DNSKVFRIDS GIVARGVGAG SGGFSRLVCL RVHPMFTLLH PTESYVSFTS LNGSKHELWP 121 ESGEQVFEGD LRPKGEWMLV DRCLGLGLVN RFNIDQVHKC MVHWGTGTVN LELWSEERPV 181 SKDSPLKISH EYEVQKIA- PGL 4 (- strand): 27528 24961 AGS-1 (25682 24961) SCR (e 0.996) Exon 1 25682 24961 ( 722 n); score: 0.996 PGS (25682 24961) SGN-U332956- 3-phase translation of AGS-1 (-strand): . . . . . . 25682 GAACTCCATTGAAGCTCCAACTTTGGATATTATTTTTATACCGGCAGGCAGCTGAAATGA E L H - S S N F G Y Y F Y T G R Q L K - N S I E A P T L D I I F I P A G S - N E T P L K L Q L W I L F L Y R Q A A E M . . . . . . 25622 GATCTTTTTTATGGTTAGGAATGAATACATGCTCAATTTTGAAATGTTAAGAGACATAAT D L F Y G - E - I H A Q F - N V K R H N I F F M V R N E Y M L N F E M L R D I I R S F L W L G M N T C S I L K C - E T - . . . . . . 25562 AGAAGAGCAAAGAGACGAGCTATGAATACTTGTGGGAATACACTAGATATGTTGACAATT R R A K R R A M N T C G N T L D M L T I E E Q R D E L - I L V G I H - I C - Q L - K S K E T S Y E Y L W E Y T R Y V D N . . . . . . 25502 ACTACTTTCAGGAGGTTTATAGATCCAAATATCGGATTGGGAGAAGAGATCAATGGTAGG T T F R R F I D P N I G L G E E I N G R L L S G G L - I Q I S D W E K R S M V G Y Y F Q E V Y R S K Y R I G R R D Q W - . . . . . . 25442 AATCAGCAACTACAACGGGTTGTTTGTGAAGGCGTTGTATGGTTTATGGGAATTTGACAC N Q Q L Q R V V C E G V V W F M G I - H I S N Y N G L F V K A L Y G L W E F D T E S A T T T G C L - R R C M V Y G N L T . . . . . . 25382 CACATGATCTGCAGTTGAAGCTAGAGTTATTCATGATCTTGAACTAATAGATGCTCCTCT H M I C S - S - S Y S - S - T N R C S S T - S A V E A R V I H D L E L I D A P L P H D L Q L K L E L F M I L N - - M L L . . . . . . 25322 CTATTGGGGAAATTATACGTTAAACTAGGGATATCCCATCAAGAAATGACAGATTTTTAT L L G K L Y V K L G I S H Q E M T D F Y Y W G N Y T L N - G Y P I K K - Q I F I S I G E I I R - T R D I P S R N D R F L . . . . . . 25262 TTCTCCATTGATTGGGATGATGATTTTTACAACATAAAACAATCTTTGCTCCCATTTATT F S I D W D D D F Y N I K Q S L L P F I S P L I G M M I F T T - N N L C S H L L F L H - L G - - F L Q H K T I F A P I Y . . . . . . 25202 ACACAAGATTTGAAGCTGAAAAGAAGAAATAGTGTCATTTACAACAATGCTTGAATTCTT T Q D L K L K R R N S V I Y N N A - I L H K I - S - K E E I V S F T T M L E F L Y T R F E A E K K K - C H L Q Q C L N S . . . . . . 25142 AGAGATTATTAATGATGTTGAACTAATAAATCCTCCTTTCTTTGGGGGAAATTATATGTG R D Y - - C - T N K S S F L W G K L Y V E I I N D V E L I N P P F F G G N Y M W - R L L M M L N - - I L L S L G E I I C . . . . . . 25082 GAACTAGGGAAATAATCGCGATATCTCACCAAGAAAATATTCAACAGGTTTTTGTTCCCT E L G K - S R Y L T K K I F N R F L F P N - G N N R D I S P R K Y S T G F C S L G T R E I I A I S H Q E N I Q Q V F V P . . . . . . 25022 ATTGATTGGGATGAGGATTTCAACAACCATAAAATAATCCAAGTTGTATTTTAAGTTTGA I D W D E D F N N H K I I Q V V F - V - L I G M R I S T T I K - S K L Y F K F E Y - L G - G F Q Q P - N N P S C I L S L . 24962 GA R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-4_AGS-1_PPS_1 (25580 25386) (frame '1'; 192 bp, 64 residues) 1 NVKRHNRRAK RRAMNTCGNT LDMLTITTFR RFIDPNIGLG EEINGRNQQL QRVVCEGVVW 61 FMGI- 3-phase translation of AGS-1 (+strand): . . . . . . 24961 TCTCAAACTTAAAATACAACTTGGATTATTTTATGGTTGTTGAAATCCTCATCCCAATCA S Q T - N T T W I I L W L L K S S S Q S L K L K I Q L G L F Y G C - N P H P N Q S N L K Y N L D Y F M V V E I L I P I . . . . . . 25021 ATAGGGAACAAAAACCTGTTGAATATTTTCTTGGTGAGATATCGCGATTATTTCCCTAGT I G N K N L L N I F L V R Y R D Y F P S - G T K T C - I F S W - D I A I I S L V N R E Q K P V E Y F L G E I S R L F P - . . . . . . 25081 TCCACATATAATTTCCCCCAAAGAAAGGAGGATTTATTAGTTCAACATCATTAATAATCT S T Y N F P Q R K E D L L V Q H H - - S P H I I S P K E R R I Y - F N I I N N L F H I - F P P K K G G F I S S T S L I I . . . . . . 25141 CTAAGAATTCAAGCATTGTTGTAAATGACACTATTTCTTCTTTTCAGCTTCAAATCTTGT L R I Q A L L - M T L F L L F S F K S C - E F K H C C K - H Y F F F S A S N L V S K N S S I V V N D T I S S F Q L Q I L . . . . . . 25201 GTAATAAATGGGAGCAAAGATTGTTTTATGTTGTAAAAATCATCATCCCAATCAATGGAG V I N G S K D C F M L - K S S S Q S M E - - M G A K I V L C C K N H H P N Q W R C N K W E Q R L F Y V V K I I I P I N G . . . . . . 25261 AAATAAAAATCTGTCATTTCTTGATGGGATATCCCTAGTTTAACGTATAATTTCCCCAAT K - K S V I S - W D I P S L T Y N F P N N K N L S F L D G I S L V - R I I S P I E I K I C H F L M G Y P - F N V - F P Q . . . . . . 25321 AGAGAGGAGCATCTATTAGTTCAAGATCATGAATAACTCTAGCTTCAACTGCAGATCATG R E E H L L V Q D H E - L - L Q L Q I M E R S I Y - F K I M N N S S F N C R S C - R G A S I S S R S - I T L A S T A D H . . . . . . 25381 TGGTGTCAAATTCCCATAAACCATACAACGCCTTCACAAACAACCCGTTGTAGTTGCTGA W C Q I P I N H T T P S Q T T R C S C - G V K F P - T I Q R L H K Q P V V V A D V V S N S H K P Y N A F T N N P L - L L . . . . . . 25441 TTCCTACCATTGATCTCTTCTCCCAATCCGATATTTGGATCTATAAACCTCCTGAAAGTA F L P L I S S P N P I F G S I N L L K V S Y H - S L L P I R Y L D L - T S - K - I P T I D L F S Q S D I W I Y K P P E S . . . . . . 25501 GTAATTGTCAACATATCTAGTGTATTCCCACAAGTATTCATAGCTCGTCTCTTTGCTCTT V I V N I S S V F P Q V F I A R L F A L - L S T Y L V Y S H K Y S - L V S L L F S N C Q H I - C I P T S I H S S S L C S . . . . . . 25561 CTATTATGTCTCTTAACATTTCAAAATTGAGCATGTATTCATTCCTAACCATAAAAAAGA L L C L L T F Q N - A C I H S - P - K R Y Y V S - H F K I E H V F I P N H K K D S I M S L N I S K L S M Y S F L T I K K . . . . . . 25621 TCTCATTTCAGCTGCCTGCCGGTATAAAAATAATATCCAAAGTTGGAGCTTCAATGGAGT S H F S C L P V - K - Y P K L E L Q W S L I S A A C R Y K N N I Q S W S F N G V I S F Q L P A G I K I I S K V G A S M E . 25681 TC F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-4_AGS-1_PPS_1 (25092 25298) (frame '0'; 204 bp, 68 residues) 1 FPPKKGGFIS STSLIISKNS SIVVNDTISS FQLQILCNKW EQRLFYVVKI IIPINGEIKI 61 CHFLMGYP- AGS-2 (27528 27024,26936 26808,26656 26168,26080 25781) SCR (e 0.978 d 0.991 a 0.998,e 1.000 d 0.996 a 0.987,e 1.000 d 0.999 a 1.000,e 1.000) Exon 1 27528 27024 ( 505 n); score: 0.978 Intron 1 27023 26937 ( 87 n); Pd: 0.991 Pa: 0.998 Exon 2 26936 26808 ( 129 n); score: 1.000 Intron 2 26807 26657 ( 151 n); Pd: 0.996 Pa: 0.987 Exon 3 26656 26168 ( 489 n); score: 1.000 Intron 3 26167 26081 ( 87 n); Pd: 0.999 Pa: 1.000 Exon 4 26080 25781 ( 300 n); score: 1.000 PGS (27528 27024,26936 26808,26656 26168,26080 25781) SGN-U315367+ 3-phase translation of AGS-2 (-strand): . . . . . . 27528 AAATATATATATATAATATTATTATTTGCCTTCTTCCTCAAGTTTCTTTCCAAACTTCCG K Y I Y I I L L F A F F L K F L S K L P N I Y I - Y Y Y L P S S S S F F P N F R I Y I Y N I I I C L L P Q V S F Q T S . . . . . . 27468 GCGAACATTTTTTTTGATTCCAGATTTTGATCGGAAGTTATCAAACATGATGACCCGTGG A N I F F D S R F - S E V I K H D D P W R T F F L I P D F D R K L S N M M T R G G E H F F - F Q I L I G S Y Q T - - P V . . . . . . 27408 AGCAACAAGGATGACACGAGTTGTCATGGGTCATATGGGTCCACGTTACTTTTCAACTAC S N K D D T S C H G S Y G S T L L F N Y A T R M T R V V M G H M G P R Y F S T T E Q Q G - H E L S W V I W V H V T F Q L . . . . . . 27348 AGTTCTGCGAAATAATCCCGGGACCGGAGTTGTTGGTGGAGTCGCTGCCGGACTTTTGCA S S A K - S R D R S C W W S R C R T F A V L R N N P G T G V V G G V A A G L L H Q F C E I I P G P E L L V E S L P D F C . . . . . . 27288 TGGTTTTCCGGCGAATCCATCGGAGAAAGTGGCAGTAACGTGGGTTAGGCATTTTTCGGC W F S G E S I G E S G S N V G - A F F G G F P A N P S E K V A V T W V R H F S A M V F R R I H R R K W Q - R G L G I F R . . . . . . 27228 TATGGGTTCACGGAGCGCTAGTACTGCGGCTTTGAATGATAAGCAACAAGAGAAGGAAAG Y G F T E R - Y C G F E - - A T R E G K M G S R S A S T A A L N D K Q Q E K E S L W V H G A L V L R L - M I S N K R R K . . . . . . 27168 TAGTGACAAAAAAGTGGAGAACACCGCCACCGCCACCGCCGCTGTAAACGGTGGTGTTGG - - Q K S G E H R H R H R R C K R W C W S D K K V E N T A T A T A A V N G G V G V V T K K W R T P P P P P P L - T V V L . . . . . . 27108 TAAATCTGTGGTGAGTTATTGGGGGGTTCCTCCTTCAAAGGCTACTAAACCAGATGGTAC - I C G E L L G G S S F K G Y - T R W Y K S V V S Y W G V P P S K A T K P D G T V N L W - V I G G F L L Q R L L N Q M V . . . : . . . 27048 TGAATGGAAATGGAATTGTTTTAGG : CCATGGGAGACTTATGAAGCTGATATGTCGATAGA - M E M E L F - : A M G D L - S - Y V D R E W K W N C F R : P W E T Y E A D M S I D L N G N G I V L G : H G R L M K L I C R - . . . . . . 26901 TTTGACGAAACACCATGCGCCTGTAACGTTTTTGGATAAATTTGCTTATTGGACTGTTAA F D E T P C A C N V F G - I C L L D C - L T K H H A P V T F L D K F A Y W T V K I - R N T M R L - R F W I N L L I G L L . . . . : . . 26841 GATCCTTCGTTTCCCCACTGATGTATTTTTTCAG : AGGAGATATGGTTGCAGAGCAATGAT D P S F P H - C I F S : E E I W L Q S N D I L R F P T D V F F Q : R R Y G C R A M M R S F V S P L M Y F F R : G D M V A E Q - . . . . . . 26630 GTTAGAGACAGTGGCGGCGGTGCCTGGAATGGTGGGAGGTATGTTGTTGCATTGTAAGTC V R D S G G G A W N G G R Y V V A L - V L E T V A A V P G M V G G M L L H C K S C - R Q W R R C L E W W E V C C C I V S . . . . . . 26570 ATTGAGGCGATTCGAACAGAGTGGTGGATGGATCAAAGCTCTGTTAGAAGAAGCTGAAAA I E A I R T E W W M D Q S S V R R S - K L R R F E Q S G G W I K A L L E E A E N H - G D S N R V V D G S K L C - K K L K . . . . . . 26510 CGAGAGGATGCATTTGATGACTTTCATGGAAGTTGCAAAGCCAAATGTATACGAACGTGC R E D A F D D F H G S C K A K C I R T C E R M H L M T F M E V A K P N V Y E R A T R G C I - - L S W K L Q S Q M Y T N V . . . . . . 26450 TCTGGTTTTCGCAGTGCAAGGCGTCTTCTTCAACGCTTACTTTGCTGCATACCTTATTTC S G F R S A R R L L Q R L L C C I P Y F L V F A V Q G V F F N A Y F A A Y L I S L W F S Q C K A S S S T L T L L H T L F . . . . . . 26390 CCCAAAATTGGCTCATCGTATCGTCGGATATTTGGAAGAAGAGGCTGTACATTCGTACAC P K I G S S Y R R I F G R R G C T F V H P K L A H R I V G Y L E E E A V H S Y T P Q N W L I V S S D I W K K R L Y I R T . . . . . . 26330 CGAGTTCCTCAAGGAATTGGACAATGGTAACATTGAGAACGTTCCTGCTCCCGCTATTGC R V P Q G I G Q W - H - E R S C S R Y C E F L K E L D N G N I E N V P A P A I A P S S S R N W T M V T L R T F L L P L L . . . . . . 26270 TATTGATTACTGGCGACTGCCTAAGGATGCCACTCTCCGCGATGTTGTCTTGGTTGTTCG Y - L L A T A - G C H S P R C C L G C S I D Y W R L P K D A T L R D V V L V V R L L I T G D C L R M P L S A M L S W L F . . . . . : . 26210 GGCTGATGAGGCTCATCATCGCGATGTCAACCACTATGCATCT : GACATTCATTACCAAGG G - - G S S S R C Q P L C I : - H S L P R A D E A H H R D V N H Y A S : D I H Y Q G G L M R L I I A M S T T M H L : T F I T K . . . . . . 26063 ACAACAGCTGAAGGACTCACCAGCACCACTTGGGTATCACTAAGCGACTAATAATAAATA T T A E G L T S T T W V S L S D - - - I Q Q L K D S P A P L G Y H - A T N N K Y D N S - R T H Q H H L G I T K R L I I N . . . . . . 26003 CAAAGATATGACTTATCAAGCTAAAAGTCCGTCACTATTTTGTTCCTTTTTTTGAACTGG Q R Y D L S S - K S V T I L F L F L N W K D M T Y Q A K S P S L F C S F F - T G T K I - L I K L K V R H Y F V P F F E L . . . . . . 25943 TAATAGAGAATATGTAGTAGGTATTACTAATCTCGAATGTTGATGTACATATTTTTGTGT - - R I C S R Y Y - S R M L M Y I F L C N R E Y V V G I T N L E C - C T Y F C V V I E N M - - V L L I S N V D V H I F V . . . . . . 25883 GGATTTGGTTCGTTCTTTGCTGCCTCTTCATCGATAAGAGGTAGAGTAGGATGACCTCTG G F G S F F A A S S S I R G R V G - P L D L V R S L L P L H R - E V E - D D L C W I W F V L C C L F I D K R - S R M T S . . . . . 25823 TATCCTATATATTCTTGATGAAATTATATCATCTTTTTGTCTA Y P I Y S - - N Y I I F L S I L Y I L D E I I S S F C L V S Y I F L M K L Y H L F V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-4_AGS-2_PPS_1 (27512 27024,26936 26808,26656 26168,26080 26021) (frame '2'; 1164 bp, 388 residues) 1 YYYLPSSSSF FPNFRRTFFL IPDFDRKLSN MMTRGATRMT RVVMGHMGPR YFSTTVLRNN 61 PGTGVVGGVA AGLLHGFPAN PSEKVAVTWV RHFSAMGSRS ASTAALNDKQ QEKESSDKKV 121 ENTATATAAV NGGVGKSVVS YWGVPPSKAT KPDGTEWKWN CFRPWETYEA DMSIDLTKHH 181 APVTFLDKFA YWTVKILRFP TDVFFQRRYG CRAMMLETVA AVPGMVGGML LHCKSLRRFE 241 QSGGWIKALL EEAENERMHL MTFMEVAKPN VYERALVFAV QGVFFNAYFA AYLISPKLAH 301 RIVGYLEEEA VHSYTEFLKE LDNGNIENVP APAIAIDYWR LPKDATLRDV VLVVRADEAH 361 HRDVNHYASD IHYQGQQLKD SPAPLGYH- AGS-3 (27031 27024,26936 26808,26685 26233) SCR (e 1.000 d 0.991 a 0.998,e 0.992 d 0.996 a 0.595,e 0.907) Exon 1 27031 27024 ( 8 n); score: 1.000 Intron 1 27023 26937 ( 87 n); Pd: 0.991 Pa: 0.998 Exon 2 26936 26808 ( 129 n); score: 0.992 Intron 2 26807 26686 ( 122 n); Pd: 0.996 Pa: 0.595 Exon 3 26685 26233 ( 453 n); score: 0.907 PGS (27031 27024,26936 26808,26685 26233) SGN-U335117+ 3-phase translation of AGS-3 (-strand): . : . . . . . 27031 GTTTTAGG : CCATGGGAGACTTATGAAGCTGATATGTCGATAGATTTGACGAAACACCATG V L G : H G R L M K L I C R - I - R N T M F - : A M G D L - S - Y V D R F D E T P C F R : P W E T Y E A D M S I D L T K H H . . . . . . 26884 CGCCTGTAACGTTTTTGGATAAATTTGCTTATTGGACTGTTAAGATCCTTCGTTTCCCCA R L - R F W I N L L I G L L R S F V S P A C N V F G - I C L L D C - D P S F P H A P V T F L D K F A Y W T V K I L R F P . . : . . . . 26824 CTGATGTATTTTTTCAG : AGAGATGATTTAATTTTGATGTGGTGCAGAGGAGATATGGTTG L M Y F F R : E M I - F - C G A E E I W L - C I F S : E R - F N F D V V Q R R Y G C T D V F F Q : R D D L I L M W C R G D M V . . . . . . 26642 CAGAGCAATGATGTTAGAGACAGTGGCGGCGGTGCCTGGAATGGTGGGAGGTATGTTGTT Q S N D V R D S G G G A W N G G R Y V V R A M M L E T V A A V P G M V G G M L L A E Q - C - R Q W R R C L E W W E V C C . . . . . . 26582 GCATTGTAAGTCATTGAGGCGATTCGAACAGAGTGGTGGATGGATCAAAGCTCTGTTAGA A L - V I E A I R T E W W M D Q S S V R H C K S L R R F E Q S G G W I K A L L E C I V S H - G D S N R V V D G S K L C - . . . . . . 26522 AGAAGCTGAAAACGAGAGGATGCATTTGATGACTTTCATGGAAGTTGCAAAGCCAAATGT R S - K R E D A F D D F H G S C K A K C E A E N E R M H L M T F M E V A K P N V K K L K T R G C I - - L S W K L Q S Q M . . . . . . 26462 ATACGAACGTGCTCTGGTTTTCGCAGTGCAAGGCGTCTTCTTCAACGCTTACTTTGCTGC I R T C S G F R S A R R L L Q R L L C C Y E R A L V F A V Q G V F F N A Y F A A Y T N V L W F S Q C K A S S S T L T L L . . . . . . 26402 ATACCTTATTTCCCCAAAATTGGCTCATCGTATCGTCGGATATTTGGAAGAAGAGGCTGT I P Y F P K I G S S Y R R I F G R R G C Y L I S P K L A H R I V G Y L E E E A V H T L F P Q N W L I V S S D I W K K R L . . . . . . 26342 ACATTCGTACACCGAGTTCCTCAAGGAATTGGACAATGGTAACATTGAGAACGTTCCTGC T F V H R V P Q G I G Q W - H - E R S C H S Y T E F L K E L D N G N I E N V P A Y I R T P S S S R N W T M V T L R T F L . . . . . 26282 TCCCGCTATTGCTATTGATTACTGGCGACTGCCTAAGGATGCCACTCTCC S R Y C Y - L L A T A - G C H S P A I A I D Y W R L P K D A T L L P L L L L I T G D C L R M P L S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-4_AGS-3_PPS_1 (26677 26234) (frame '2'; 444 bp, 148 residues) 1 FNFDVVQRRY GCRAMMLETV AAVPGMVGGM LLHCKSLRRF EQSGGWIKAL LEEAENERMH 61 LMTFMEVAKP NVYERALVFA VQGVFFNAYF AAYLISPKLA HRIVGYLEEE AVHSYTEFLK 121 ELDNGNIENV PAPAIAIDYW RLPKDATL PGL 5 (- strand): 33439 29906 AGS-1 (32645 32338,32055 31927,30556 30068,29965 29906) SCR (e 1.000 d 0.994 a 1.000,e 1.000 d 0.987 a 0.994,e 1.000 d 1.000 a 1.000,e 1.000) Exon 1 32645 32338 ( 308 n); score: 1.000 Intron 1 32337 32056 ( 282 n); Pd: 0.994 Pa: 1.000 Exon 2 32055 31927 ( 129 n); score: 1.000 Intron 2 31926 30557 (1370 n); Pd: 0.987 Pa: 0.994 Exon 3 30556 30068 ( 489 n); score: 1.000 Intron 3 30067 29966 ( 102 n); Pd: 1.000 Pa: 1.000 Exon 4 29965 29906 ( 60 n); score: 1.000 PGS (32645 32338,32055 31927,30556 30068,29965 29906) SGN-U338437+ 3-phase translation of AGS-1 (-strand): . . . . . . 32645 TTATTTTGTTAAATTTCAATCATTTGAATATGAATCGTAATGCAGCAATGAAAATATCTG L F C - I S I I - I - I V M Q Q - K Y L Y F V K F Q S F E Y E S - C S N E N I W I L L N F N H L N M N R N A A M K I S . . . . . . 32585 GATTACTTATGAGACAATTACGGGGCGAATTTTTGCCCCGTGGAGGCATGGTACAAATTC D Y L - D N Y G A N F C P V E A W Y K F I T Y E T I T G R I F A P W R H G T N S G L L M R Q L R G E F L P R G G M V Q I . . . . . . 32525 GTCATTGGAGTAATATGAATACTTCTAGTAAAACAAAAGAAGAACAAAAAACACATAATC V I G V I - I L L V K Q K K N K K H I I S L E - Y E Y F - - N K R R T K N T - S R H W S N M N T S S K T K E E Q K T H N . . . . . . 32465 AACCATCACACACTGATGCAACCAACGCCGCCGGCGACAAGGCTAAGAAAATTGTTAGCT N H H T L M Q P T P P A T R L R K L L A T I T H - C N Q R R R R Q G - E N C - L Q P S H T D A T N A A G D K A K K I V S . . . . . . 32405 ATTGGGGGGTGGATCCTCCCAAAATCTCCAAGGAAGATGGTACACCATGGAAGTGGAACA I G G W I L P K S P R K M V H H G S G T L G G G S S Q N L Q G R W Y T M E V E Q Y W G V D P P K I S K E D G T P W K W N . : . . . . . 32345 GCTTCAGG : CCATGGGAGACGTACTCAGCTGATATTTCAATTGATGTGGAGAAGCACCATA A S G : H G R R T Q L I F Q L M W R S T I L Q : A M G D V L S - Y F N - C G E A P Y S F R : P W E T Y S A D I S I D V E K H H . . . . . . 32003 TGCCTACCAATTTTATGGACAAGTTTGCTTATTGGACAGTCCAATCTTTAAAGTACCCCA C L P I L W T S L L I G Q S N L - S T P A Y Q F Y G Q V C L L D S P I F K V P H M P T N F M D K F A Y W T V Q S L K Y P . . : . . . . 31943 CCTACTTGTTTTTCCAG : AGACGTCACATGTGTCATGCTATGTTACTAGAAACGGTTGCAG P T C F S R : D V T C V M L C Y - K R L Q L L V F P : E T S H V S C Y V T R N G C S T Y L F F Q : R R H M C H A M L L E T V A . . . . . . 30513 CCGTGCCAGGCATGGTAGGTGGTATGCTCCTCCACTGTAAATCCCTCCGTCGATTCGAGC P C Q A W - V V C S S T V N P S V D S S R A R H G R W Y A P P L - I P P S I R A A V P G M V G G M L L H C K S L R R F E . . . . . . 30453 ACAGTGGTGGTTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACGGATGCATCTCA T V V V G S K P S S K K Q R T N G C I S Q W W L D Q S P P R R S R E R T D A S H H S G G W I K A L L E E A E N E R M H L . . . . . . 30393 TGACCTTTATCGAATTATCAAATCCGAAATGGTACGAACGTGCATTAGTCTTTGCAGTTC - P L S N Y Q I R N G T N V H - S L Q F D L Y R I I K S E M V R T C I S L C S S M T F I E L S N P K W Y E R A L V F A V . . . . . . 30333 AAGGCGTATTTGTCAATGCCTATTTCATTGCCTATTTAGCGTCCCCAAAATTGGCTCATC K A Y L S M P I S L P I - R P Q N W L I R R I C Q C L F H C L F S V P K I G S S Q G V F V N A Y F I A Y L A S P K L A H . . . . . . 30273 GAATTGTTGGTTACTTAGAAGAAGAAGCAGTAAATTCGTATACAGAGTTTTTGATCGATA E L L V T - K K K Q - I R I Q S F - S I N C W L L R R R S S K F V Y R V F D R Y R I V G Y L E E E A V N S Y T E F L I D . . . . . . 30213 TAGAAAAGGGACTTTTCGAGAACTCGCCTGCACCGGCTATTGCTATTGATTATTGGCGTT - K R D F S R T R L H R L L L L I I G V R K G T F R E L A C T G Y C Y - L L A F I E K G L F E N S P A P A I A I D Y W R . . . . . . 30153 TGCCGGCCGATGCAACGCTAAAAGATGTTGTTACTGTTATTAGGGCCGATGAGGCACATC C R P M Q R - K M L L L L L G P M R H I A G R C N A K R C C Y C Y - G R - G T S L P A D A T L K D V V T V I R A D E A H . . . : . . . 30093 ATCGGGACCTAAATCACTTTGCTTCG : GATATACAGTGTCAAGGGCATGAGTTGAAGGGCT I G T - I T L L R : I Y S V K G M S - R A S G P K S L C F : G Y T V S R A - V E G L H R D L N H F A S : D I Q C Q G H E L K G . . . 29931 ACCCTGCCCCAATTGGATATCATTGA T L P Q L D I I P C P N W I S L Y P A P I G Y H - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-5_AGS-1_PPS_1 (32643 32338,32055 31927,30556 30068,29965 29906) (frame '0'; 981 bp, 327 residues) 1 ILLNFNHLNM NRNAAMKISG LLMRQLRGEF LPRGGMVQIR HWSNMNTSSK TKEEQKTHNQ 61 PSHTDATNAA GDKAKKIVSY WGVDPPKISK EDGTPWKWNS FRPWETYSAD ISIDVEKHHM 121 PTNFMDKFAY WTVQSLKYPT YLFFQRRHMC HAMLLETVAA VPGMVGGMLL HCKSLRRFEH 181 SGGWIKALLE EAENERMHLM TFIELSNPKW YERALVFAVQ GVFVNAYFIA YLASPKLAHR 241 IVGYLEEEAV NSYTEFLIDI EKGLFENSPA PAIAIDYWRL PADATLKDVV TVIRADEAHH 301 RDLNHFASDI QCQGHELKGY PAPIGYH- AGS-2 (32478 31927,30556 30271) SCR (e 0.980 d 0.987 a 0.994,e 1.000) Exon 1 32478 31927 ( 552 n); score: 0.980 Intron 1 31926 30557 (1370 n); Pd: 0.987 Pa: 0.994 Exon 2 30556 30271 ( 286 n); score: 1.000 PGS (32478 31927,30556 30271) SGN-U327108+ 3-phase translation of AGS-2 (-strand): . . . . . . 32478 AAAACACATAATCAACCATCACACACTGATGCAACCAACGCCGCCGGCGACAAGGCTAAG K T H N Q P S H T D A T N A A G D K A K K H I I N H H T L M Q P T P P A T R L R N T - S T I T H - C N Q R R R R Q G - . . . . . . 32418 AAAATTGTTAGCTATTGGGGGGTGGATCCTCCCAAAATCTCCAAGGAAGATGGTACACCA K I V S Y W G V D P P K I S K E D G T P K L L A I G G W I L P K S P R K M V H H E N C - L L G G G S S Q N L Q G R W Y T . . . . . . 32358 TGGAAGTGGAACAGCTTCAGGGTACGTACGCGAATAATATATTCCCTTTATTCCGTTTTA W K W N S F R V R T R I I Y S L Y S V L G S G T A S G Y V R E - Y I P F I P F Y M E V E Q L Q G T Y A N N I F P L F R F . . . . . . 32298 TATGATTGACTTTCTTTTTTAGTCAGAAAGAATGACATATTTTTGTACTCTCTCTGAAAC Y D - L S F L V R K N D I F L Y S L - N M I D F L F - S E R M T Y F C T L S E T I - L T F F F S Q K E - H I F V L S L K . . . . . . 32238 GAGACAGAGGAAGTATGTTTCTAAATTATGACTTACTTATAAGGCTATAACTAAATCTCT E T E E V C F - I M T Y L - G Y N - I S R Q R K Y V S K L - L T Y K A I T K S L R D R G S M F L N Y D L L I R L - L N L . . . . . . 32178 TTTAGATAACTTGATCGTGTAAAAATATTTTATATTGATACTATATATAACTTAAACTCA F R - L D R V K I F Y I D T I Y N L N S L D N L I V - K Y F I L I L Y I T - T H F - I T - S C K N I L Y - Y Y I - L K L . . . . . . 32118 TAATTTTAATTATATATATATATATATATATATATATTTTTTTTTTTTTTTTGGTTTTGA - F - L Y I Y I Y I Y I F F F F F W F - N F N Y I Y I Y I Y I Y F F F F F G F D I I L I I Y I Y I Y I Y I F F F F L V L . . . . . . 32058 CAGCCATGGGAGACGTACTCAGCTGATATTTCAATTGATGTGGAGAAGCACCATATGCCT Q P W E T Y S A D I S I D V E K H H M P S H G R R T Q L I F Q L M W R S T I C L T A M G D V L S - Y F N - C G E A P Y A . . . . . . 31998 ACCAATTTTATGGACAAGTTTGCTTATTGGACAGTCCAATCTTTAAAGTACCCCACCTAC T N F M D K F A Y W T V Q S L K Y P T Y P I L W T S L L I G Q S N L - S T P P T Y Q F Y G Q V C L L D S P I F K V P H L . . : . . . . 31938 TTGTTTTTCCAG : AGACGTCACATGTGTCATGCTATGTTACTAGAAACGGTTGCAGCCGTG L F F Q : R R H M C H A M L L E T V A A V C F S R : D V T C V M L C Y - K R L Q P C L V F P : E T S H V S C Y V T R N G C S R . . . . . . 30508 CCAGGCATGGTAGGTGGTATGCTCCTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGT P G M V G G M L L H C K S L R R F E H S Q A W - V V C S S T V N P S V D S S T V A R H G R W Y A P P L - I P P S I R A Q . . . . . . 30448 GGTGGTTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACGGATGCATCTCATGACC G G W I K A L L E E A E N E R M H L M T V V G S K P S S K K Q R T N G C I S - P W W L D Q S P P R R S R E R T D A S H D . . . . . . 30388 TTTATCGAATTATCAAATCCGAAATGGTACGAACGTGCATTAGTCTTTGCAGTTCAAGGC F I E L S N P K W Y E R A L V F A V Q G L S N Y Q I R N G T N V H - S L Q F K A L Y R I I K S E M V R T C I S L C S S R . . . . . . 30328 GTATTTGTCAATGCCTATTTCATTGCCTATTTAGCGTCCCCAAAATTGGCTCATCGAA V F V N A Y F I A Y L A S P K L A H R Y L S M P I S L P I - R P Q N W L I E R I C Q C L F H C L F S V P K I G S S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-5_AGS-2_PPS_1 (32058 31927,30556 30272) (frame '1'; 417 bp, 139 residues) 1 QPWETYSADI SIDVEKHHMP TNFMDKFAYW TVQSLKYPTY LFFQRRHMCH AMLLETVAAV 61 PGMVGGMLLH CKSLRRFEHS GGWIKALLEE AENERMHLMT FIELSNPKWY ERALVFAVQG 121 VFVNAYFIAY LASPKLAHR AGS-3 (31624 31151) SCR (e 0.842) Exon 1 31624 31151 ( 474 n); score: 0.842 PGS (31624 31151) SGN-U340386- 3-phase translation of AGS-3 (-strand): . . . . . . 31624 ATTTACACTATATCTGGATCATTGTTATCTACTGTATTGTACAGTAACATTATTATACTT I Y T I S G S L L S T V L Y S N I I I L F T L Y L D H C Y L L Y C T V T L L Y L L H Y I W I I V I Y C I V Q - H Y Y T . . . . . . 31564 ACAATATTTGTTTGGATTATTACTTAAAATGTATTGTATTGTATTATAAAATTTGGTTGT T I F V W I I T - N V L Y C I I K F G C Q Y L F G L L L K M Y C I V L - N L V V Y N I C L D Y Y L K C I V L Y Y K I W L . . . . . . 31504 TAAGTAATAATGAAAACCACTATTTTATAGAACATTCAATTTGGTGTGTTCCCATTGTTA - V I M K T T I L - N I Q F G V F P L L K - - - K P L F Y R T F N L V C S H C Y L S N N E N H Y F I E H S I W C V P I V . . . . . . 31444 CTTAATATCCTTTTTCAATTATATATTTACATAATATTTTAAAATACTATTTTACCCTTT L N I L F Q L Y I Y I I F - N T I L P F L I S F F N Y I F T - Y F K I L F Y P L T - Y P F S I I Y L H N I L K Y Y F T L . . . . . . 31384 ATCTTAATTATTTGAATCTACTAAAACCTCCTACCATAGAATAATTAGGATATTTTAGTA I L I I - I Y - N L L P - N N - D I L V S - L F E S T K T S Y H R I I R I F - - Y L N Y L N L L K P P T I E - L G Y F S . . . . . . 31324 AATTTATAAATTACAATACAGTACGTACTATCAAACCAAACAATTAAAATGTTATTAAAC N L - I T I Q Y V L S N Q T I K M L L N I Y K L Q Y S T Y Y Q T K Q L K C Y - T K F I N Y N T V R T I K P N N - N V I K . . . . . . 31264 AACAACATACAATACAGTCTAGCCAAACATTGTATCTACCATACAATACAGTACAATAGA N N I Q Y S L A K H C I Y H T I Q Y N R T T Y N T V - P N I V S T I Q Y S T I E Q Q H T I Q S S Q T L Y L P Y N T V Q - . . . . . . 31204 GTACAATACAATACAATACATTATGAAACAATCGGTAACAATGATCCAAACAAA V Q Y N T I H Y E T I G N N D P N K Y N T I Q Y I M K Q S V T M I Q T S T I Q Y N T L - N N R - Q - S K Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 31151 TTTGTTTGGATCATTGTTACCGATTGTTTCATAATGTATTGTATTGTATTGTACTCTATT F V W I I V T D C F I M Y C I V L Y S I L F G S L L P I V S - C I V L Y C T L L C L D H C Y R L F H N V L Y C I V L Y . . . . . . 31211 GTACTGTATTGTATGGTAGATACAATGTTTGGCTAGACTGTATTGTATGTTGTTGTTTAA V L Y C M V D T M F G - T V L Y V V V - Y C I V W - I Q C L A R L Y C M L L F N C T V L Y G R Y N V W L D C I V C C C L . . . . . . 31271 TAACATTTTAATTGTTTGGTTTGATAGTACGTACTGTATTGTAATTTATAAATTTACTAA - H F N C L V - - Y V L Y C N L - I Y - N I L I V W F D S T Y C I V I Y K F T K I T F - L F G L I V R T V L - F I N L L . . . . . . 31331 AATATCCTAATTATTCTATGGTAGGAGGTTTTAGTAGATTCAAATAATTAAGATAAAGGG N I L I I L W - E V L V D S N N - D K G I S - L F Y G R R F - - I Q I I K I K G K Y P N Y S M V G G F S R F K - L R - R . . . . . . 31391 TAAAATAGTATTTTAAAATATTATGTAAATATATAATTGAAAAAGGATATTAAGTAACAA - N S I L K Y Y V N I - L K K D I K - Q K I V F - N I M - I Y N - K R I L S N N V K - Y F K I L C K Y I I E K G Y - V T . . . . . . 31451 TGGGAACACACCAAATTGAATGTTCTATAAAATAGTGGTTTTCATTATTACTTAACAACC W E H T K L N V L - N S G F H Y Y L T T G N T P N - M F Y K I V V F I I T - Q P M G T H Q I E C S I K - W F S L L L N N . . . . . . 31511 AAATTTTATAATACAATACAATACATTTTAAGTAATAATCCAAACAAATATTGTAAGTAT K F Y N T I Q Y I L S N N P N K Y C K Y N F I I Q Y N T F - V I I Q T N I V S I Q I L - Y N T I H F K - - S K Q I L - V . . . . . . 31571 AATAATGTTACTGTACAATACAGTAGATAACAATGATCCAGATATAGTGTAAAT N N V T V Q Y S R - Q - S R Y S V N I M L L Y N T V D N N D P D I V - - - C Y C T I Q - I T M I Q I - C K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (33439 32883) SCR (e 0.798) Exon 1 33439 32883 ( 557 n); score: 0.798 PGS (33436 32883) SGN-U326156+ PGS (33439 33203) SGN-U324134+ PGS (33436 33217) SGN-U337965- 3-phase translation of AGS-4 (-strand): . . . . . . 33439 TAGGGCTGTTCAAAATCGAATCGAAATTGATAAGCGAACTGATAAAAAAGTTATTGGTTT - G C S K S N R N - - A N - - K S Y W F R A V Q N R I E I D K R T D K K V I G L G L F K I E S K L I S E L I K K L L V . . . . . . 33379 ATATTATTGGGTTATTGGTTTAGTGATTTTGATGACGATTTTGATTTTTTTGTTATCTGG I L L G Y W F S D F D D D F D F F V I W Y Y W V I G L V I L M T I L I F L L S G Y I I G L L V - - F - - R F - F F C Y L . . . . . . 33319 TTATCGGTTCTCAACTGTTTAAAGTTTTTTCTTAACGGGTTAACAGATAACCCGATAGTA L S V L N C L K F F L N G L T D N P I V Y R F S T V - S F F L T G - Q I T R - - V I G S Q L F K V F S - R V N R - P D S . . . . . . 33259 AATTAAATAATAATATTTATACCATTTTGTATATAAAGTCCTCGATTTAGAGTTTAATTT N - I I I F I P F C I - S P R F R V - F I K - - Y L Y H F V Y K V L D L E F N F K L N N N I Y T I L Y I K S S I - S L I . . . . . . 33199 CCTACTTTTATTTTTGGTTGTCTCAAATACTTGATTATTCTACAATGTAAAAGTGTTTGT P T F I F G C L K Y L I I L Q C K S V C L L L F L V V S N T - L F Y N V K V F V S Y F Y F W L S Q I L D Y S T M - K C L . . . . . . 33139 TTTTTAGCAAGATGTAACTTGTGAACTCAAGTGCATGATTTATTTAGTTAGTCCCCTTGT F L A R C N L - T Q V H D L F S - S P C F - Q D V T C E L K C M I Y L V S P L V F F S K M - L V N S S A - F I - L V P L . . . . . . 33079 TTCTAATTGATTTTTAATGTTTTTTTTTTGTCAAATCTTAACGATTAAATCGATAACCGA F - L I F N V F F L S N L N D - I D N R S N - F L M F F F C Q I L T I K S I T E F L I D F - C F F F V K S - R L N R - P . . . . . . 33019 ACCGATAACGATCAATAACCGATAAACTAATATCTTAATGGTTCTATAACGATTTAGCAT T D N D Q - P I N - Y L N G S I T I - H P I T I N N R - T N I L M V L - R F S I N R - R S I T D K L I S - W F Y N D L A . . . . . . 32959 CTCTACAAATCGATAACCAATAAGCCAACCCGATAAACTTCAAAACCAAACCAAACCGGC L Y K S I T N K P T R - T S K P N Q T G S T N R - P I S Q P D K L Q N Q T K P A S L Q I D N Q - A N P I N F K T K P N R . . 32899 CGATATACCACCCTACT R Y T T L D I P P Y P I Y H P T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 32883 AGTAGGGTGGTATATCGGCCGGTTTGGTTTGGTTTTGAAGTTTATCGGGTTGGCTTATTG S R V V Y R P V W F G F E V Y R V G L L V G W Y I G R F G L V L K F I G L A Y W - G G I S A G L V W F - S L S G W L I . . . . . . 32943 GTTATCGATTTGTAGAGATGCTAAATCGTTATAGAACCATTAAGATATTAGTTTATCGGT V I D L - R C - I V I E P L R Y - F I G L S I C R D A K S L - N H - D I S L S V G Y R F V E M L N R Y R T I K I L V Y R . . . . . . 33003 TATTGATCGTTATCGGTTCGGTTATCGATTTAATCGTTAAGATTTGACAAAAAAAAAACA Y - S L S V R L S I - S L R F D K K K T I D R Y R F G Y R F N R - D L T K K K H L L I V I G S V I D L I V K I - Q K K N . . . . . . 33063 TTAAAAATCAATTAGAAACAAGGGGACTAACTAAATAAATCATGCACTTGAGTTCACAAG L K I N - K Q G D - L N K S C T - V H K - K S I R N K G T N - I N H A L E F T S I K N Q L E T R G L T K - I M H L S S Q . . . . . . 33123 TTACATCTTGCTAAAAAACAAACACTTTTACATTGTAGAATAATCAAGTATTTGAGACAA L H L A K K Q T L L H C R I I K Y L R Q Y I L L K N K H F Y I V E - S S I - D N V T S C - K T N T F T L - N N Q V F E T . . . . . . 33183 CCAAAAATAAAAGTAGGAAATTAAACTCTAAATCGAGGACTTTATATACAAAATGGTATA P K I K V G N - T L N R G L Y I Q N G I Q K - K - E I K L - I E D F I Y K M V - T K N K S R K L N S K S R T L Y T K W Y . . . . . . 33243 AATATTATTATTTAATTTACTATCGGGTTATCTGTTAACCCGTTAAGAAAAAACTTTAAA N I I I - F T I G L S V N P L R K N F K I L L F N L L S G Y L L T R - E K T L N K Y Y Y L I Y Y R V I C - P V K K K L - . . . . . . 33303 CAGTTGAGAACCGATAACCAGATAACAAAAAAATCAAAATCGTCATCAAAATCACTAAAC Q L R T D N Q I T K K S K S S S K S L N S - E P I T R - Q K N Q N R H Q N H - T T V E N R - P D N K K I K I V I K I T K . . . . . . 33363 CAATAACCCAATAATATAAACCAATAACTTTTTTATCAGTTCGCTTATCAATTTCGATTC Q - P N N I N Q - L F Y Q F A Y Q F R F N N P I I - T N N F F I S S L I N F D S P I T Q - Y K P I T F L S V R L S I S I . . 33423 GATTTTGAACAGCCCTA D F E Q P I L N S P R F - T A L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 38728 43816 AGS-1 (38728 38845,38876 38940,39092 39152) SCR (e 0.860 d 0.282 a 0.000,e 0.785 d 0.000 a 0.000,e 0.754) Exon 1 38728 38845 ( 118 n); score: 0.860 Intron 1 38846 38875 ( 30 n); Pd: 0.282 Pa: 0.000 Exon 2 38876 38940 ( 65 n); score: 0.785 Intron 2 38941 39091 ( 151 n); Pd: 0.000 Pa: 0.000 Exon 3 39092 39152 ( 61 n); score: 0.754 PGS (38728 38845,38876 38940,39092 39152) SGN-U335137- 3-phase translation of AGS-1 (+strand): . . . . . . 38728 CGACTTCTATTTCAACCCATTTTAATAAGGGCAACTTTCACATATAACAAACAAAAAATT R L L F Q P I L I R A T F T Y N K Q K I D F Y F N P F - - G Q L S H I T N K K F T S I S T H F N K G N F H I - Q T K N . . . . . . : 38788 CATATTTGTATGCTATAACAAACTTTGCGTAATTGCGCTCCATAGCAAACATAAAACT : AA H I C M L - Q T L R N C A P - Q T - N : - I F V C Y N K L C V I A L H S K H K T : N S Y L Y A I T N F A - L R S I A N I K L : . . . . . . 38878 TTCGCTGACCTAAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTTGTTT F A D L N C I I R W P I S L Q L Y N L F S L T - I V - F A G L F R C N C I I C F I R - P K L Y N S L A Y F A A I V - F V . : . . . . . 38938 TGC : TTGTTAATTCGCAATTGTATAATTCGTTGGCCTTTTCTCTGCAATATTTGAAGTAAA C : L L I R N C I I R W P F L C N I - S K A : C - F A I V - F V G L F S A I F E V K L : L V N S Q L Y N S L A F S L Q Y L K - . 39149 ATGT M C N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (38763 39429,42037 42045,43442 43465) SCR (e 0.913 d 0.000 a 0.999,e 0.556 d 0.000 a 0.347,e 0.792) Exon 1 38763 39429 ( 667 n); score: 0.913 Intron 1 39430 42036 (2607 n); Pd: 0.000 Pa: 0.999 Exon 2 42037 42045 ( 9 n); score: 0.556 Intron 2 42046 43441 (1396 n); Pd: 0.000 Pa: 0.347 Exon 3 43442 43465 ( 24 n); score: 0.792 PGS (38763 38889) SGN-U325194+ PGS (38838 39429,42037 42045,43442 43465) SGN-U315404+ 3-phase translation of AGS-2 (+strand): . . . . . . 38763 TTTCACATATAACAAACAAAAAATTCATATTTGTATGCTATAACAAACTTTGCGTAATTG F H I - Q T K N S Y L Y A I T N F A - L F T Y N K Q K I H I C M L - Q T L R N C S H I T N K K F I F V C Y N K L C V I . . . . . . 38823 CGCTCCATAGCAAACATAAAACTGTATAATTTGCTATACATATACAATTGTGTAATTCGC R S I A N I K L Y N L L Y I Y N C V I R A P - Q T - N C I I C Y T Y T I V - F A A L H S K H K T V - F A I H I Q L C N S . . . . . . 38883 TGACCTAAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTTGTTTTGCAT - P K L Y N S L A Y F A A I V - F V L H D L N C I I R W P I S L Q L Y N L F C I L T - I V - F A G L F R C N C I I C F A . . . . . . 38943 ATAGTTGAATTGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGA I V E L N - N V C I L H N Y K C I A R R - L N - I K M Y V Y C I I I S V - Q E D Y S - I E L K C M Y I A - L - V Y S K K . . . . . . 39003 TATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATA Y M F F S L Y T K T E T Q Y I H F C C I I C F S R F I Q K Q K H N I Y T S V V - I Y V F L A L Y K N R N T I Y T L L L Y . . . . . . 39063 AAGCTAGAGAAAATTGTATTACACTAAAATTGTTAATTCGCAATTGTATAATTCGTTGGC K L E K I V L H - N C - F A I V - F V G S - R K L Y Y T K I V N S Q L Y N S L A K A R E N C I T L K L L I R N C I I R W . . . . . . 39123 CTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACAC L F S A I F E V K C L - I V - L S V - H F S L Q Y L K - N V C K L Y N - V Y N T P F L C N I - S K M F V N C I I K C I T . . . . . . 39183 GAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGAAA E D I H F C M C I Y N F L L L Y T K Q K K I Y I F A C V Y T I F S C F I Q N R N R R Y T F L H V Y I Q F S L A L Y K T E . . . . . . 39243 CAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAG Q N Y T L L C I K R E R R A R M E S G E R I I H F C V - S E R G E R E W R V A S T E L Y T S V Y K A R E A S E N G E W R . . . . . . 39303 CGAGATTTTTGGGTGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAAA R D F W V R D A G K F - L M F A M E H K E I F G - E T L A N F S - C L L W S T N A R F L G E R R W Q I L A N V C Y G A Q . . . . . . 39363 TAAATCAAACCCTGGCTATTCCATTTAATTTAGCTTATTAGTTTGCTATTATATATAATT - I K P W L F H L I - L I S L L L Y I I K S N P G Y S I - F S L L V C Y Y I - F I N Q T L A I P F N L A Y - F A I I Y N . : . : . . 39423 TTCCCTT : ATTCTTATA : AAAAATAGAGAGGAGGGCAAAAGA F P : Y S Y : K K - R G G Q K S L : I L I : K N R E E G K R F P L : F L - : K I E R R A K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-6_AGS-2_PPS_1 (39143 39403) (frame '0'; 258 bp, 86 residues) 1 SKMFVNCIIK CITRRYTFLH VYIQFSLALY KTETELYTSV YKAREASENG EWRARFLGER 61 RWQILANVCY GAQINQTLAI PFNLAY- AGS-3 (39625 39654) SCR (e 0.800) Exon 1 39625 39654 ( 30 n); score: 0.800 PGS (39625 39654) SGN-U336521+ 3-phase translation of AGS-3 (+strand): . . . 39625 GTAGGCAATTGCAAATATTATTTTTAAATT V G N C K Y Y F - I - A I A N I I F K R Q L Q I L F L N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . 39654 AATTTAAAAATAATATTTGCAATTGCCTAC N L K I I F A I A Y I - K - Y L Q L P F K N N I C N C L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (42877 43816) SCR (e 1.000) Exon 1 42877 43816 ( 940 n); score: 1.000 PGS (42877 43816) SGN-U322384- 3-phase translation of AGS-4 (+strand): . . . . . . 42877 TTGTATGCATTTACATATTTATAAAGCAAAGAGCCACAAGAGAATATATATTACATTATG L Y A F T Y L - S K E P Q E N I Y Y I M C M H L H I Y K A K S H K R I Y I T L C V C I Y I F I K Q R A T R E Y I L H Y . . . . . . 42937 TATATACAATAAAGACGATCGAATTCTTTTAATGCATCAACAATCTTTGAACCCGAACTC Y I Q - R R S N S F N A S T I F E P E L I Y N K D D R I L L M H Q Q S L N P N S V Y T I K T I E F F - C I N N L - T R T . . . . . . 42997 TACAAAATGAAGTGAAACAAAGAAATGCTCATCTCCAATCTACACAAAATAACTTAAAAA Y K M K - N K E M L I S N L H K I T - K T K - S E T K K C S S P I Y T K - L K K L Q N E V K Q R N A H L Q S T Q N N L K . . . . . . 43057 GCTGAAAGAAACTCAATGTAGCTTTACTCTTGCTCTTGTTGTAATTTATGACAAAGTTTT A E R N S M - L Y S C S C C N L - Q S F L K E T Q C S F T L A L V V I Y D K V L S - K K L N V A L L L L L L - F M T K F . . . . . . 43117 AAGCTCCCACATAGTTTCTGCATCAATGCTGCAGTTGCTTTGTAGAAATTTCACATCAAG K L P H S F C I N A A V A L - K F H I K S S H I V S A S M L Q L L C R N F T S R - A P T - F L H Q C C S C F V E I S H Q . . . . . . 43177 AATCAATTCAAAGTTCTAATTTTTTAAACACCATAAAACATTAAGAAGGAAAGACGGTTG N Q F K V L I F - T P - N I K K E R R L I N S K F - F F K H H K T L R R K D G W E S I Q S S N F L N T I K H - E G K T V . . . . . . 43237 GGGGAGGGGTTCAAACCTGAGACTCTCAGTAGACTGCAAAATGTTGCGGACAAAAATTGC G E G F K P E T L S R L Q N V A D K N C G R G S N L R L S V D C K M L R T K I A G G G V Q T - D S Q - T A K C C G Q K L . . . . . . 43297 CTGGTCGCTTGGTTGCTCGCCGATTGAAATTGGTGGTCTTAGCGCGCTTGTTGAAGCTCA L V A W L L A D - N W W S - R A C - S S W S L G C S P I E I G G L S A L V E A H P G R L V A R R L K L V V L A R L L K L . . . . . . 43357 TCATTTTTATCCAGCTGCTGGTTCTGCAGCTGCTGCTGGATGACGTTGTTTGTTGTTTGT S F L S S C W F C S C C W M T L F V V C H F Y P A A G S A A A A G - R C L L F V I I F I Q L L V L Q L L L D D V V C C L . . . . . . 43417 TCTTCGGGTTGCACTGTCTGTAAAGAAAAATAGAGAGGAGGGCAAAAGAGATCTGGGCGA S S G C T V C K E K - R G G Q K R S G R L R V A L S V K K N R E E G K R D L G D F F G L H C L - R K I E R R A K E I W A . . . . . . 43477 CGGATTTTGAGAGGAGAGGAGAAGAGAATGAAGAAAATTGAGGGTTAGGGATCTTTTGTA R I L R G E E K R M K K I E G - G S F V G F - E E R R R E - R K L R V R D L L - T D F E R R G E E N E E N - G L G I F C . . . . . . 43537 AAAAATAGGAAACTCTTAGCAGACTGAAAATGTTGCGGACGGAGACCGTCTAGTCGCTTG K N R K L L A D - K C C G R R P S S R L K I G N S - Q T E N V A D G D R L V A W K K - E T L S R L K M L R T E T V - S L . . . . . . 43597 GTTGCTCGCCGATTGGGGCTGCCATCGATGGAGGTTCACTGATGGTCTTCACGCGCCTGT V A R R L G L P S M E V H - W S S R A C L L A D W G C H R W R F T D G L H A P V G C S P I G A A I D G G S L M V F T R L . . . . . . 43657 TCGAGCTCCCCATTTCTTTCCGGCTGCTGGTTTTGCGGCTACTGCTTGACGAAATTGTTT S S S P F L S G C W F C G Y C L T K L F R A P H F F P A A G F A A T A - R N C L F E L P I S F R L L V L R L L L D E I V . . . . . . 43717 GTTGCTCATTTTTAGGGTTGCACTGATCGGAAAGAAGGATGGAGAGAAGGGCAAAAAGGA V A H F - G C T D R K E G W R E G Q K G L L I F R V A L I G K K D G E K G K K D C C S F L G L H - S E R R M E R R A K R . . . . 43777 TCCGGGCGGCTGATTCGGAGAGGAGGGCAAAAGGGATCTG S G R L I R R G G Q K G S P G G - F G E E G K R D L I R A A D S E R R A K G I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-6_AGS-4_PPS_1 (43196 43399) (frame '2'; 201 bp, 67 residues) 1 FFKHHKTLRR KDGWGRGSNL RLSVDCKMLR TKIAWSLGCS PIEIGGLSAL VEAHHFYPAA 61 GSAAAAG- 3-phase translation of AGS-4 (-strand): . . . . . . 43816 CAGATCCCTTTTGCCCTCCTCTCCGAATCAGCCGCCCGGATCCTTTTTGCCCTTCTCTCC Q I P F A L L S E S A A R I L F A L L S R S L L P S S P N Q P P G S F L P F S P D P F C P P L R I S R P D P F C P S L . . . . . . 43756 ATCCTTCTTTCCGATCAGTGCAACCCTAAAAATGAGCAACAAACAATTTCGTCAAGCAGT I L L S D Q C N P K N E Q Q T I S S S S S F F P I S A T L K M S N K Q F R Q A V H P S F R S V Q P - K - A T N N F V K Q . . . . . . 43696 AGCCGCAAAACCAGCAGCCGGAAAGAAATGGGGAGCTCGAACAGGCGCGTGAAGACCATC S R K T S S R K E M G S S N R R V K T I A A K P A A G K K W G A R T G A - R P S - P Q N Q Q P E R N G E L E Q A R E D H . . . . . . 43636 AGTGAACCTCCATCGATGGCAGCCCCAATCGGCGAGCAACCAAGCGACTAGACGGTCTCC S E P P S M A A P I G E Q P S D - T V S V N L H R W Q P Q S A S N Q A T R R S P Q - T S I D G S P N R R A T K R L D G L . . . . . . 43576 GTCCGCAACATTTTCAGTCTGCTAAGAGTTTCCTATTTTTTACAAAAGATCCCTAACCCT V R N I F S L L R V S Y F L Q K I P N P S A T F S V C - E F P I F Y K R S L T L R P Q H F Q S A K S F L F F T K D P - P . . . . . . 43516 CAATTTTCTTCATTCTCTTCTCCTCTCCTCTCAAAATCCGTCGCCCAGATCTCTTTTGCC Q F S S F S S P L L S K S V A Q I S F A N F L H S L L L S S Q N P S P R S L L P S I F F I L F S S P L K I R R P D L F C . . . . . . 43456 CTCCTCTCTATTTTTCTTTACAGACAGTGCAACCCGAAGAACAAACAACAAACAACGTCA L L S I F L Y R Q C N P K N K Q Q T T S S S L F F F T D S A T R R T N N K Q R H P P L Y F S L Q T V Q P E E Q T T N N V . . . . . . 43396 TCCAGCAGCAGCTGCAGAACCAGCAGCTGGATAAAAATGATGAGCTTCAACAAGCGCGCT S S S S C R T S S W I K M M S F N K R A P A A A A E P A A G - K - - A S T S A L I Q Q Q L Q N Q Q L D K N D E L Q Q A R . . . . . . 43336 AAGACCACCAATTTCAATCGGCGAGCAACCAAGCGACCAGGCAATTTTTGTCCGCAACAT K T T N F N R R A T K R P G N F C P Q H R P P I S I G E Q P S D Q A I F V R N I - D H Q F Q S A S N Q A T R Q F L S A T . . . . . . 43276 TTTGCAGTCTACTGAGAGTCTCAGGTTTGAACCCCTCCCCCAACCGTCTTTCCTTCTTAA F A V Y - E S Q V - T P P P T V F P S - L Q S T E S L R F E P L P Q P S F L L N F C S L L R V S G L N P S P N R L S F L . . . . . . 43216 TGTTTTATGGTGTTTAAAAAATTAGAACTTTGAATTGATTCTTGATGTGAAATTTCTACA C F M V F K K L E L - I D S - C E I S T V L W C L K N - N F E L I L D V K F L Q M F Y G V - K I R T L N - F L M - N F Y . . . . . . 43156 AAGCAACTGCAGCATTGATGCAGAAACTATGTGGGAGCTTAAAACTTTGTCATAAATTAC K Q L Q H - C R N Y V G A - N F V I N Y S N C S I D A E T M W E L K T L S - I T K A T A A L M Q K L C G S L K L C H K L . . . . . . 43096 AACAAGAGCAAGAGTAAAGCTACATTGAGTTTCTTTCAGCTTTTTAAGTTATTTTGTGTA N K S K S K A T L S F F Q L F K L F C V T R A R V K L H - V S F S F L S Y F V - Q Q E Q E - S Y I E F L S A F - V I L C . . . . . . 43036 GATTGGAGATGAGCATTTCTTTGTTTCACTTCATTTTGTAGAGTTCGGGTTCAAAGATTG D W R - A F L C F T S F C R V R V Q R L I G D E H F F V S L H F V E F G F K D C R L E M S I S L F H F I L - S S G S K I . . . . . . 42976 TTGATGCATTAAAAGAATTCGATCGTCTTTATTGTATATACATAATGTAATATATATTCT L M H - K N S I V F I V Y T - C N I Y S - C I K R I R S S L L Y I H N V I Y I L V D A L K E F D R L Y C I Y I M - Y I F . . . . 42916 CTTGTGGCTCTTTGCTTTATAAATATGTAAATGCATACAA L V A L C F I N M - M H T L W L F A L - I C K C I Q S C G S L L Y K Y V N A Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-6_AGS-4_PPS_1 (43585 43262) (frame '1'; 321 bp, 107 residues) 1 TVSVRNIFSL LRVSYFLQKI PNPQFSSFSS PLLSKSVAQI SFALLSIFLY RQCNPKNKQQ 61 TTSSSSSCRT SSWIKMMSFN KRAKTTNFNR RATKRPGNFC PQHFAVY- >C08SLe0082C24.1-_PGL-6_AGS-4_PPS_2 (43816 43586) (frame '1'; 228 bp, 76 residues) 1 QIPFALLSES AARILFALLS ILLSDQCNPK NEQQTISSSS SRKTSSRKEM GSSNRRVKTI 61 SEPPSMAAPI GEQPSD- PGL 7 (- strand): 53429 52217 AGS-1 (53429 53275,53001 52217) SCR (e 1.000 d 0.999 a 0.704,e 1.000) Exon 1 53429 53275 ( 155 n); score: 1.000 Intron 1 53274 53002 ( 273 n); Pd: 0.999 Pa: 0.704 Exon 2 53001 52217 ( 785 n); score: 1.000 PGS (53429 53275,53001 52217) SGN-U329532+ 3-phase translation of AGS-1 (-strand): . . . . . . 53429 AAGAATCAAAACCCAAAATTAACTCCCCTGAACCCTCTCTCTCCCCGTTCAAAATTACCC K N Q N P K L T P L N P L S P R S K L P R I K T Q N - L P - T L S L P V Q N Y P E S K P K I N S P E P S L S P F K I T . . . . . . 53369 ACAATCTACCAGTAGTTTGTGCTGTGCAAACTCCTCCGGCCGGCGACGGCGGCATCAGCA T I Y Q - F V L C K L L R P A T A A S A Q S T S S L C C A N S S G R R R R H Q Q H N L P V V C A V Q T P P A G D G G I S . . . . : . . 53309 ATTTAGAGTCGGTGACTCCTCTTCCGTCACTCCCT : AAAGATGAGTCGATCAAGTGAAGCA I - S R - L L F R H S L : K M S R S S E A F R V G D S S S V T P : - R - V D Q V K Q N L E S V T P L P S L P : K D E S I K - S . . . . . . 52976 GCCGCCTTGAAGCGGAAAAGACCGGATTCATCTACTCAGGGACTTGTAGATGCTGAGCTT A A L K R K R P D S S T Q G L V D A E L P P - S G K D R I H L L R D L - M L S L S R L E A E K T G F I Y S G T C R C - A . . . . . . 52916 GTAGTGCTCAATGTGGTCAAAAGTAAAAAAAATCAGGGTGTCTGGGTAGCAGATGTGAAA V V L N V V K S K K N Q G V W V A D V K - C S M W S K V K K I R V S G - Q M - K C S A Q C G Q K - K K S G C L G S R C E . . . . . . 52856 AAAGAGGCAAACATCGCACCAGCTCTTGTCGATAAATGCCTTACTTCATTGGTGAAGAAG K E A N I A P A L V D K C L T S L V K K K R Q T S H Q L L S I N A L L H W - R R K R G K H R T S S C R - M P Y F I G E E . . . . . . 52796 AACTTGATTAAAAAAGTCCCTAGTATCCAAAATAAGGCAAAGAAGTATTACATGGCTGTT N L I K K V P S I Q N K A K K Y Y M A V T - L K K S L V S K I R Q R S I T W L L E L D - K S P - Y P K - G K E V L H G C . . . . . . 52736 GAGTATGAACCTTCCGAGGAACTGACTGGTGGAGCATGGTATTCCGAGGGAAAACTTGAC E Y E P S E E L T G G A W Y S E G K L D S M N L P R N - L V E H G I P R E N L T - V - T F R G T D W W S M V F R G K T - . . . . . . 52676 AAGGAATTCATAACCGTTCTTAGAGAGACGTGCCTTAAAGTCATTGGAATGATGAAAGTT K E F I T V L R E T C L K V I G M M K V R N S - P F L E R R A L K S L E - - K L Q G I H N R S - R D V P - S H W N D E S . . . . . . 52616 GCTACTGTGGAAGGAATCCACGACTTTTTGAAGAAGCGGAAAGTTGTTGAGTGCTGTACA A T V E G I H D F L K K R K V V E C C T L L W K E S T T F - R S G K L L S A V Q C Y C G R N P R L F E E A E S C - V L Y . . . . . . 52556 AGTCAACAAGTCGGGGAAATCTTGAACTCTATGGTTCTAGACGATTCCATTATAGAGGTA S Q Q V G E I L N S M V L D D S I I E V V N K S G K S - T L W F - T I P L - R - K S T S R G N L E L Y G S R R F H Y R G . . . . . . 52496 AAGAGCACTGGATTGGGTGAATATCATTCTATTCCTATTGGATCTGTTTGTTACAGAATT K S T G L G E Y H S I P I G S V C Y R I R A L D W V N I I L F L L D L F V T E L K E H W I G - I S F Y S Y W I C L L Q N . . . . . . 52436 GCAGTTGGAGTTACTTCAGGTCCGAAAACAATAGGGCCAATGGCTTCGATTCCATGTGGT A V G V T S G P K T I G P M A S I P C G Q L E L L Q V R K Q - G Q W L R F H V V C S W S Y F R S E N N R A N G F D S M W . . . . . . 52376 GCTTGCCCTAGGATTAGTGTATGTACACCTGATGGAATTATATCTCCGAAAACCTGTGTC A C P R I S V C T P D G I I S P K T C V L A L G L V Y V H L M E L Y L R K P V S C L P - D - C M Y T - W N Y I S E N L C . . . . . . 52316 TACTTCACTAAATGGTTAGACATTGAATTCTGATGGACTACAACAGTTGCTTTTCGGGTT Y F T K W L D I E F - W T T T V A F R V T S L N G - T L N S D G L Q Q L L F G F L L H - M V R H - I L M D Y N S C F S G . . . . 52256 TCTTATTTTGTCTTTTGGTTTATAGATGAAACCAATCAAC S Y F V F W F I D E T N Q L I L S F G L - M K P I N F L F C L L V Y R - N Q S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-7_AGS-1_PPS_1 (53294 53275,53001 52284) (frame '1'; 735 bp, 245 residues) 1 LLFRHSLKMS RSSEAAALKR KRPDSSTQGL VDAELVVLNV VKSKKNQGVW VADVKKEANI 61 APALVDKCLT SLVKKNLIKK VPSIQNKAKK YYMAVEYEPS EELTGGAWYS EGKLDKEFIT 121 VLRETCLKVI GMMKVATVEG IHDFLKKRKV VECCTSQQVG EILNSMVLDD SIIEVKSTGL 181 GEYHSIPIGS VCYRIAVGVT SGPKTIGPMA SIPCGACPRI SVCTPDGIIS PKTCVYFTKW 241 LDIEF- PGL 8 (- strand): 85337 76437 AGS-1 (80899 80870,79954 79892,76729 76437) SCR (e 0.733 d 0.000 a 0.000,e 0.627 d 0.000 a 0.000,e 0.833) Exon 1 80899 80870 ( 30 n); score: 0.733 Intron 1 80869 79955 ( 915 n); Pd: 0.000 Pa: 0.000 Exon 2 79954 79892 ( 63 n); score: 0.627 Intron 2 79891 76730 (3162 n); Pd: 0.000 Pa: 0.000 Exon 3 76729 76437 ( 293 n); score: 0.833 PGS (80899 80870,79954 79892,76729 76437) SGN-U343183+ 3-phase translation of AGS-1 (-strand): . . . : . . . 80899 ATTATTATCATTGTTAATTTATAAGATCTA : AATTAAATATATTACCGTCTTATCAACAAT I I I I V N L - D L : N - I Y Y R L I N N L L S L L I Y K I - : I K Y I T V L S T I Y Y H C - F I R S : K L N I L P S Y Q Q . . . . : . . 79924 CTATATATATACATATAATTTTTTTTAAAAAGA : TTAAATTATAAATTATTATTTAAAAAA L Y I Y I - F F L K R : L N Y K L L F K K Y I Y T Y N F F - K D : - I I N Y Y L K N S I Y I H I I F F K K : I K L - I I I - K . . . . . . 76702 CATTATCGAAAATATCGACAAAATAATATTACATGATGTTAATGTTACTACCTGTTAATC H Y R K Y R Q N N I T - C - C Y Y L L I I I E N I D K I I L H D V N V T T C - S T L S K I S T K - Y Y M M L M L L P V N . . . . . . 76642 AAATCCACAAATAAAATTATCTTTATAATATTTATTAAGTTTTTTTCAAGTAACAGTATA K S T N K I I F I I F I K F F S S N S I N P Q I K L S L - Y L L S F F Q V T V - Q I H K - N Y L Y N I Y - V F F K - Q Y . . . . . . 76582 AATAGCTAAATGGAAATATTAACCTAATTGTTTTGAGTTTGGATTCTCTTTAATTTTAAT N S - M E I L T - L F - V W I L F N F N I A K W K Y - P N C F E F G F S L I L I K - L N G N I N L I V L S L D S L - F - . . . . . . 76522 TTTAATTTTAATATTATATTATATTTTTAATCAATTTTTATTGGCCCACGTACCGGCGCT F N F N I I L Y F - S I F I G P R T G A L I L I L Y Y I F N Q F L L A H V P A L F - F - Y Y I I F L I N F Y W P T Y R R . . . 76462 ACCGATATTTCTGAAACCTCACAAAT T D I S E T S Q P I F L K P H K Y R Y F - N L T N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (84445 84380,82905 82819,82474 82449,81923 81905,81440 81417,80664 80247) SCR (e 0.773 d 0.000 a 0.396,e 0.546 d 0.800 a 0.000,e 0.654 d 0.716 a 0.000,e 0.579 d 0.900 a 0.000,e 0.479 d 0.490 a 0.218,e 0.797) Exon 1 84445 84380 ( 66 n); score: 0.773 Intron 1 84379 82906 (1474 n); Pd: 0.000 Pa: 0.396 Exon 2 82905 82819 ( 87 n); score: 0.546 Intron 2 82818 82475 ( 344 n); Pd: 0.800 Pa: 0.000 Exon 3 82474 82449 ( 26 n); score: 0.654 Intron 3 82448 81924 ( 525 n); Pd: 0.716 Pa: 0.000 Exon 4 81923 81905 ( 19 n); score: 0.579 Intron 4 81904 81441 ( 464 n); Pd: 0.900 Pa: 0.000 Exon 5 81440 81417 ( 24 n); score: 0.479 Intron 5 81416 80665 ( 752 n); Pd: 0.490 Pa: 0.218 Exon 6 80664 80247 ( 418 n); score: 0.797 PGS (84445 84380,82905 82819,82474 82449,81923 81905,81440 81417,80664 80247) SGN-U338250- 3-phase translation of AGS-2 (-strand): . . . . . . 84445 TATGTACTTGTTCAATTATATACAAGTTAAAATATCAAATTATGTGTATATTCAAATTTG Y V L V Q L Y T S - N I K L C V Y S N L M Y L F N Y I Q V K I S N Y V Y I Q I - C T C S I I Y K L K Y Q I M C I F K F . : . . . . . 84385 AAGGAT : GGAATCCAGAATCTTCAACATACTCCAGTTCCGCAGACCCATCTCCTAACTCTA K D : G I Q N L Q H T P V P Q T H L L T L R M : E S R I F N I L Q F R R P I S - L - E G : W N P E S S T Y S S S A D P S P N S . . . . : . . : 82851 GACTTTCAAGACAAGGCAGATCACCAAACGGTG : ATAACAAAGAAACTTAGAGTCTTAAG : C D F Q D K A D H Q T V : I T K K L R V L S : T F K T R Q I T K R - : - Q R N L E S - : A R L S R Q G R S P N G : D N K E T - S L K : . . : . . . : . 81922 TACATCCTCTAGCTCCAA : CACTTGCTCCAGCCTTCAAGACTT : CAACTTGTCTCTCTATAG Y I L - L Q : H L L Q P S R L : Q L V S L - T S S S S N : T C S S L Q D F : N L S L Y S L H P L A P : T L A P A F K T : S T C L S I . . . . . . 80646 TCCTTTCATCCAAATGAAACTTAATTCGTTCCGCTGCAATTGCATCTAGTTTCTCCATAA S F H P N E T - F V P L Q L H L V S P - P F I Q M K L N S F R C N C I - F L H N V L S S K - N L I R S A A I A S S F S I . . . . . . 80586 TCTTTTTCATCCTTTTCCCAATCTTGTGACGGAAAGTGATAACGTTTGGATGATAACACC S F S S F S Q S C D G K - - R L D D N T L F H P F P N L V T E S D N V W M I T P I F F I L F P I L - R K V I T F G - - H . . . . . . 80526 CATATTTATTCTTCTTCTGTATAATTGGTGCCTCAGTTTTACATTCGTCCAAGATGTCAT H I Y S S S V - L V P Q F Y I R P R C H I F I L L L Y N W C L S F T F V Q D V I P Y L F F F C I I G A S V L H S S K M S . . . . . . 80466 CAGCTTCATATGCAGCACCATTGAGTTTCTGCAACCAATTTTCAATTGCCTTGTCCTTCA Q L H M Q H H - V S A T N F Q L P C P S S F I C S T I E F L Q P I F N C L V L Q S A S Y A A P L S F C N Q F S I A L S F . . . . . . 80406 ATTGCTTCAACTGAGCATCTTGTACCACAGCTTGGATTGTAGTAAACGTGCTTTGAAGCT I A S T E H L V P Q L G L - - T C F E A L L Q L S I L Y H S L D C S K R A L K L N C F N - A S C T T A W I V V N V L - S . . . . . . 80346 TTTCGAACTCATCCTTAAAACCAAGAATCAATCCAAGTTCCCCTTGGATGAAACAAGTCA F R T H P - N Q E S I Q V P L G - N K S F E L I L K T K N Q S K F P L D E T S Q F S N S S L K P R I N P S S P W M K Q V . . . . 80286 GATTCTCTAACATAATTTGAAGGAAAGCTTCAGCCATAGA D S L T - F E G K L Q P - I L - H N L K E S F S H R R F S N I I - R K A S A I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-8_AGS-2_PPS_1 (80597 80277) (frame '2'; 318 bp, 106 residues) 1 FLHNLFHPFP NLVTESDNVW MITPIFILLL YNWCLSFTFV QDVISFICST IEFLQPIFNC 61 LVLQLLQLSI LYHSLDCSKR ALKLFELILK TKNQSKFPLD ETSQIL- AGS-3 (85337 85304,83634 83598,83445 82159) SCR (e 0.735 d 0.900 a 0.999,e 0.514 d 0.000 a 0.000,e 0.905) Exon 1 85337 85304 ( 34 n); score: 0.735 Intron 1 85303 83635 (1669 n); Pd: 0.900 Pa: 0.999 Exon 2 83634 83598 ( 37 n); score: 0.514 Intron 2 83597 83446 ( 152 n); Pd: 0.000 Pa: 0.000 Exon 3 83445 82159 (1287 n); score: 0.905 PGS (82890 82159) SGN-U331884- PGS (85337 85304,83634 83598,83445 82515) SGN-U344665- 3-phase translation of AGS-3 (-strand): . . . . : . . 85337 CTTTTTTGGTATATCATTTCTTTCTTCTTTTTTA : GTTGAAAGGCGTATACGAACAAATGC L F W Y I I S F F F F : S - K A Y T N K C F F G I S F L S S F L : V E R R I R T N A F L V Y H F F L L F - : L K G V Y E Q M . . : . . . . 83608 AGGGCTCAAAA : ATTCCCTAACTGATAAATTTGTTAGGTGCTGCAATCCCTCCGGTAAACA R A Q K : F P N - - I C - V L Q S L R - T G L K : N S L T D K F V R C C N P S G K H Q G S K : I P - L I N L L G A A I P P V N . . . . . . 83396 TTTTAGCCTCTTACAATTTGTTATGGATAATTCTGTGAGTGAAGTTAAACCTTTCACCCC F - P L T I C Y G - F C E - S - T F H P F S L L Q F V M D N S V S E V K P F T P I L A S Y N L L W I I L - V K L N L S P . . . . . . 83336 TTCCTCGGGGAGACTCTCGAGTGCGTCACAATATTCAATTTTCAGATGCTTCAAAGCATT F L G E T L E C V T I F N F Q M L Q S I S S G R L S S A S Q Y S I F R C F K A L L P R G D S R V R H N I Q F S D A S K H . . . . . . 83276 GAGACTAGCCAGGCTGTTTGGCAGCTCTTTGAGATTGAAGATGAAAGAGATTTCCAAGTA E T S Q A V W Q L F E I E D E R D F Q V R L A R L F G S S L R L K M K E I S K Y - D - P G C L A A L - D - R - K R F P S . . . . . . 83216 TTTGAGATTTGCAAGGCTTTTGAACATCTCTTCTGGGAGCGAAGTAGCTGTCAAGTTATG F E I C K A F E H L F W E R S S C Q V M L R F A R L L N I S S G S E V A V K L W I - D L Q G F - T S L L G A K - L S S Y . . . . . . 83156 GCTAATGTTGAGGGAAGTAAGAGCCCTAAGATTATATATGGACCTCAAACCTATTGCATC A N V E G S K S P K I I Y G P Q T Y C I L M L R E V R A L R L Y M D L K P I A S G - C - G K - E P - D Y I W T S N L L H . . . . . . 83096 TGACATGTTCCGATTAACTACCAATTTCTTGACAGAAGAAAGGGTCGGAATAACAAGCAC - H V P I N Y Q F L D R R K G R N N K H D M F R L T T N F L T E E R V G I T S T L T C S D - L P I S - Q K K G S E - Q A . . . . . . 83036 AGGACACCAGCTAATTGTCATCTCTTCAAGCACGGGGAATTGCTCTTCTCCTGCCTCTTT R T P A N C H L F K H G E L L F S C L F G H Q L I V I S S S T G N C S S P A S F Q D T S - L S S L Q A R G I A L L L P L . . . . . . 82976 CAGCAATCCTTTCAGATTATCGAAATTGACTATAATAAGTTTTCTCAGAGATGGAAACCT Q Q S F Q I I E I D Y N K F S Q R W K P S N P F R L S K L T I I S F L R D G N L S A I L S D Y R N - L - - V F S E M E T . . . . . . 82916 TCTTCTTGTAGGGAATCCAGAATCTTCAACATACTCCAGTTCCGCAGACCCATCTCCTAA S S C R E S R I F N I L Q F R R P I S - L L V G N P E S S T Y S S S A D P S P N F F L - G I Q N L Q H T P V P Q T H L L . . . . . . 82856 CTCTAGACTTTCAAGACAAGGCAGATCACCAAACGGTGGTAAGCATGAGCAGTTTTCACA L - T F K T R Q I T K R W - A - A V F T S R L S R Q G R S P N G G K H E Q F S Q T L D F Q D K A D H Q T V V S M S S F H . . . . . . 82796 ACCTCTAATTGCAATAGAGACAACATTTTTCAAAACTGAGTGATTCATCCACTTTGGAAG T S N C N R D N I F Q N - V I H P L W K P L I A I E T T F F K T E - F I H F G R N L - L Q - R Q H F S K L S D S S T L E . . . . . . 82736 ACGGAATCCTCTGAAGCCAGTGATTGTTAAACCAGTCACATTGGAGTGTGGTTTGAGGGC T E S S E A S D C - T S H I G V W F E G R N P L K P V I V K P V T L E C G L R A D G I L - S Q - L L N Q S H W S V V - G . . . . . . 82676 TTCAAGCACTTCAACTTCTTCTGATTCATATCTATGCCGTCCTTTCCAAGTCATGCTTAA F K H F N F F - F I S M P S F P S H A - S S T S T S S D S Y L C R P F Q V M L K L Q A L Q L L L I H I Y A V L S K S C L . . . . . . 82616 AGAATGCAGATTTTCTTTTGCAGATAAATTGGCTTCTTTTGCATCCCTATCATTCTTCAC R M Q I F F C R - I G F F C I P I I L H E C R F S F A D K L A S F A S L S F F T K N A D F L L Q I N W L L L H P Y H S S . . . . . . 82556 TCTCTCAAGATGCGTGATTTCAATTGACCCATACAAATTCAGGTTTCGTAATTCACCAAG S L K M R D F N - P I Q I Q V S - F T K L S R C V I S I D P Y K F R F R N S P S L S Q D A - F Q L T H T N S G F V I H Q . . . . . . 82496 TAGAGAATCTTTTCTCTCGCCAATAACAAAGAAACTTAGAGTCTTAAGGCATGTCAAAGA - R I F S L A N N K E T - S L K A C Q R R E S F L S P I T K K L R V L R H V K D V E N L F S R Q - Q R N L E S - G M S K . . . . . . 82436 TCCTATCCTTGGTGGCATAGAATCCAATCCATCGCAACCATCAAGTAAGAGATTTCGGAG S Y P W W H R I Q S I A T I K - E I S E P I L G G I E S N P S Q P S S K R F R R I L S L V A - N P I H R N H Q V R D F G . . . . . . 82376 ACTACCAAGTTTACTTGTTTCTTTTGGCAAACAACAAAGTGACCAGCAATACTCTACATT T T K F T C F F W Q T T K - P A I L Y I L P S L L V S F G K Q Q S D Q Q Y S T L D Y Q V Y L F L L A N N K V T S N T L H . . . . . . 82316 AAGAGTCTGCAGATTTTGAAGCTTGCATAACTGCTTTGGAAGAGTACGCATGTTATTGAG K S L Q I L K L A - L L W K S T H V I E R V C R F - S L H N C F G R V R M L L R - E S A D F E A C I T A L E E Y A C Y - . . . . . . 82256 AGAGGTTCAAGTATCTTAAATGTACTAGATCTCCAATGGAGGACGGTAACTGCTTAAGTC R G S S I L N V L D L Q W R T V T A - V E V Q V S - M Y - I S N G G R - L L K S E R F K Y L K C T R S P M E D G N C L S . . . . 82196 CCATGGAACTTAGATTAAGAACCCTCAATGAGACAAAC P W N L D - E P S M R Q H G T - I K N P Q - D K P M E L R L R T L N E T N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-8_AGS-3_PPS_1 (85336 85304,83634 83598,83445 82754) (frame '2'; 759 bp, 253 residues) 1 FFGISFLSSF LVERRIRTNA GLKNSLTDKF VRCCNPSGKH FSLLQFVMDN SVSEVKPFTP 61 SSGRLSSASQ YSIFRCFKAL RLARLFGSSL RLKMKEISKY LRFARLLNIS SGSEVAVKLW 121 LMLREVRALR LYMDLKPIAS DMFRLTTNFL TEERVGITST GHQLIVISSS TGNCSSPASF 181 SNPFRLSKLT IISFLRDGNL LLVGNPESST YSSSADPSPN SRLSRQGRSP NGGKHEQFSQ 241 PLIAIETTFF KTE- >C08SLe0082C24.1-_PGL-8_AGS-3_PPS_2 (82753 82298) (frame '2'; 453 bp, 151 residues) 1 FIHFGRRNPL KPVIVKPVTL ECGLRASSTS TSSDSYLCRP FQVMLKECRF SFADKLASFA 61 SLSFFTLSRC VISIDPYKFR FRNSPSRESF LSPITKKLRV LRHVKDPILG GIESNPSQPS 121 SKRFRRLPSL LVSFGKQQSD QQYSTLRVCR F- PGL 9 (- strand): 86461 86118 AGS-1 (86461 86410,86366 86118) SCR (e 0.865 d 0.186 a 0.000,e 0.831) Exon 1 86461 86410 ( 52 n); score: 0.865 Intron 1 86409 86367 ( 43 n); Pd: 0.186 Pa: 0.000 Exon 2 86366 86118 ( 249 n); score: 0.831 PGS (86461 86410,86366 86118) SGN-U329022+ 3-phase translation of AGS-1 (-strand): . . . . . . : 86461 TTTATGTTCCAAGAAACTTCAGCCTTGGGGCATTGGGGGTTATAATTTTTGA : TTGTTCAT F M F Q E T S A L G H W G L - F L : I V H L C S K K L Q P W G I G G Y N F - : L F I Y V P R N F S L G A L G V I I F D : C S . . . . . . 86358 TATACCCCCCTCCGAAATTTTTTTGTTGATATTTAAGTTTTAGGCAGAAAATAAACTCTT Y T P L R N F F V D I - V L G R K - T L I P P S E I F L L I F K F - A E N K L F L Y P P P K F F C - Y L S F R Q K I N S . . . . . . 86298 TTACTGATTAGGCAGAAGGTAAACACTAAAAAGAGTTTATTTTATATGCACAAAAATACA L L I R Q K V N T K K S L F Y M H K N T Y - L G R R - T L K R V Y F I C T K I Q F T D - A E G K H - K E F I L Y A Q K Y . . . . . . 86238 GACAGGAATACTTCAGACAATGTTGAATAATTTTTATCAACAAGAGTTGATCCTATATAA D R N T S D N V E - F L S T R V D P I - T G I L Q T M L N N F Y Q Q E L I L Y K R Q E Y F R Q C - I I F I N K S - S Y I . . . . . . 86178 AATTTTAACAGTAACAGAGGTAAAACATGCAAGGCACGTTTCCAGGACTCGTATTACTAT N F N S N R G K T C K A R F Q D S Y Y Y I L T V T E V K H A R H V S R T R I T I K F - Q - Q R - N M Q G T F P G L V L L . 86118 A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (- strand): 90551 88006 AGS-1 (90463 90021,88034 88006) SCR (e 0.906 d 0.929 a 0.000,e 0.759) Exon 1 90463 90021 ( 443 n); score: 0.906 Intron 1 90020 88035 (1986 n); Pd: 0.929 Pa: 0.000 Exon 2 88034 88006 ( 29 n); score: 0.759 PGS (90463 90021,88034 88006) SGN-U344226+ 3-phase translation of AGS-1 (-strand): . . . . . . 90463 TTATTGTAGATGACTAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAA L L - M T K F F L R I R N - I T I H T K Y C R - L N F F F E Y E I K L Q Y T Q K I V D D - I F S S N T K L N Y N T H K . . . . . . 90403 AAATAGTTTAATTTTTCACTCTCTTTAAACTAAGGAATGAAAGAAAAAAAACAAAATAAG K - F N F S L S L N - G M K E K K Q N K N S L I F H S L - T K E - K K K N K I R K I V - F F T L F K L R N E R K K T K - . . . . . . 90343 AATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAGTTTATGTATGAAAAAA N K K L K - L - - K K S K N S L C M K K I R N S N N Y N K R S Q K I V Y V - K K E - E T Q I I I I K E V K K - F M Y E K . . . . . . 90283 ATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCTCTAAATAATTTTTTTA I K I Y L E L - - K N H I Y L - I I F L L K Y T L N F D R R I I Y T S K - F F - N - N I P - T L I E E S Y I P L N N F F . . . . . . 90223 AAAAAAATTAGAAGTATAAATATAAATTTAAAACTAATTTTTTAATTTCCGTCAAATTAA K K I R S I N I N L K L I F - F P S N - K K L E V - I - I - N - F F N F R Q I K K K N - K Y K Y K F K T N F L I S V K L . . . . . . 90163 GGGTATATGTGAGTCATTTTATAACGACAGGGGTATATATGAGCCGTTTGTATAACGGTA G Y M - V I L - R Q G Y I - A V C I T V G I C E S F Y N D R G I Y E P F V - R - R V Y V S H F I T T G V Y M S R L Y N G . . . . . . 90103 AGGGCATATATGAGCCACTTTTATAACGAGGGATATATTAGCTCCAAATGACAAAGTTAA R A Y M S H F Y N E G Y I S S K - Q S - G H I - A T F I T R D I L A P N D K V K K G I Y E P L L - R G I Y - L Q M T K L . . . : . . . 90043 GGGGTATATCAGACTCTTTTCCC : TATATTTTTTAAATTTGATATTATTTTAT G V Y Q T L F P : I F F K F D I I L G Y I R L F S : L Y F L N L I L F Y R G I S D S F P : Y I F - I - Y Y F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (90551 90180,90133 90101,90062 90021) SCR (e 0.891 d 0.000 a 0.941,e 0.667 d 0.000 a 0.000,e 0.786) Exon 1 90551 90180 ( 372 n); score: 0.891 Intron 1 90179 90134 ( 46 n); Pd: 0.000 Pa: 0.941 Exon 2 90133 90101 ( 33 n); score: 0.667 Intron 2 90100 90063 ( 38 n); Pd: 0.000 Pa: 0.000 Exon 3 90062 90021 ( 42 n); score: 0.786 PGS (90551 90180,90133 90101,90062 90021) SGN-U322569- 3-phase translation of AGS-2 (-strand): . . . . . . 90551 TTTGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAGTCAAATTTAT F D F F L F Q - L I Y N Y Y F D S Q I Y L T F F C F N D - F I I I I L I V K F I - L F F V S M T N L - L L F - - S N L . . . . . . 90491 TTATTTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACTAAATTTTTTCTTCGAAT L F F T N I L V K L I V D D - I F S S N Y F S L I F L - N L L - M T K F F L R I F I F H - Y S C K T Y C R - L N F F F E . . . . . . 90431 ACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTCACTCTCTTTAAACTA T K L N Y N T H K K I V - F F T L F K L R N - I T I H T K K - F N F S L S L N - Y E I K L Q Y T Q K N S L I F H S L - T . . . . . . 90371 AGGAATGAAAGAAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAA R N E R K K T K - E - E T Q I I I I K E G M K E K K Q N K N K K L K - L - - K K K E - K K K N K I R I R N S N N Y N K R . . . . . . 90311 GTCAAAAAATAGTTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAA V K K - F M Y E K N - N I P - T L I E E S K N S L C M K K I K I Y L E L - - K N S Q K I V Y V - K K L K Y T L N F D R R . . . . . . 90251 TCATATATACCTCTAAATAATTTTTTTAAAAAAAATTAGAAGTATAAATATAAATTTAAA S Y I P L N N F F K K N - K Y K Y K F K H I Y L - I I F L K K I R S I N I N L K I I Y T S K - F F - K K L E V - I - I - . . : . . . : . 90191 ACTAATTTTTTA : GGGTATATATGAGCCGTTTGTATAACGGTAAGG : CTCCAAATGACAAAG T N F L : G Y I - A V C I T V R : L Q M T K L I F - : G I Y E P F V - R - G : S K - Q S N - F F : R V Y M S R L Y N G K : A P N D K . . . 90047 TTAAGGGGTATATCAGACTCTTTTCCC L R G I S D S F P - G V Y Q T L F V K G Y I R L F S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 91081 91497 AGS-1 (91081 91497) SCR (e 0.789) Exon 1 91081 91497 ( 417 n); score: 0.789 PGS (91081 91497) SGN-U338250+ 3-phase translation of AGS-1 (+strand): . . . . . . 91081 ATACATGGCTGAAGCTTTCCTTCAAATTTTGTTGAAAAATTTGACTTCTTTCATACAAGA I H G - S F P S N F V E K F D F F H T R Y M A E A F L Q I L L K N L T S F I Q E T W L K L S F K F C - K I - L L S Y K . . . . . . 91141 GGAACTTGGATTGTTTTTTGGTTTTAAGAACGAGTTTGAAAATCTTAAAAGCACGTTTAC G T W I V F W F - E R V - K S - K H V Y E L G L F F G F K N E F E N L K S T F T R N L D C F L V L R T S L K I L K A R L . . . . . . 91201 TACGATCCAAGCTGTGCTTGAAGATGCTCAGGAGAAGCAACTGAAGGACAAGCCACTAGA Y D P S C A - R C S G E A T E G Q A T R T I Q A V L E D A Q E K Q L K D K P L E L R S K L C L K M L R R S N - R T S H - . . . . . . 91261 AAATTGGTTGCAGAAACTCAATATTGCTGCATATGAAGTTGATGACATCTTGGATGAATG K L V A E T Q Y C C I - S - - H L G - M N W L Q K L N I A A Y E V D D I L D E C K I G C R N S I L L H M K L M T S W M N . . . . . . 91321 TCAAACTGAGGCAGCAAGACTCAATCAGACTAAATATGGGAGTTATCATCCAAAGGCTAT S N - G S K T Q S D - I W E L S S K G Y Q T E A A R L N Q T K Y G S Y H P K A I V K L R Q Q D S I R L N M G V I I Q R L . . . . . . 91381 CGCTTTCCGTTACAAGATTGGGAAAAGGATGAAAGAGATAATGGAGAGACTAGATGCAAT R F P L Q D W E K D E R D N G E T R C N A F R Y K I G K R M K E I M E R L D A I S L S V T R L G K G - K R - W R D - M Q . . . . . . 91441 TGCTGCAGAACGAAGCAAGTTTCATTTGGAAAAAAGGACTACAGAGAGAGAAGCTGC C C R T K Q V S F G K K D Y R E R S C A A E R S K F H L E K R T T E R E A L L Q N E A S F I W K K G L Q R E K L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-11_AGS-1_PPS_1 (91082 91495) (frame '2'; 414 bp, 138 residues) 1 YMAEAFLQIL LKNLTSFIQE ELGLFFGFKN EFENLKSTFT TIQAVLEDAQ EKQLKDKPLE 61 NWLQKLNIAA YEVDDILDEC QTEAARLNQT KYGSYHPKAI AFRYKIGKRM KEIMERLDAI 121 AAERSKFHLE KRTTEREA 3-phase translation of AGS-1 (-strand): . . . . . . 91497 GCAGCTTCTCTCTCTGTAGTCCTTTTTTCCAAATGAAACTTGCTTCGTTCTGCAGCAATT A A S L S V V L F S K - N L L R S A A I Q L L S L - S F F P N E T C F V L Q Q L S F S L C S P F F Q M K L A S F C S N . . . . . . 91437 GCATCTAGTCTCTCCATTATCTCTTTCATCCTTTTCCCAATCTTGTAACGGAAAGCGATA A S S L S I I S F I L F P I L - R K A I H L V S P L S L S S F S Q S C N G K R - C I - S L H Y L F H P F P N L V T E S D . . . . . . 91377 GCCTTTGGATGATAACTCCCATATTTAGTCTGATTGAGTCTTGCTGCCTCAGTTTGACAT A F G - - L P Y L V - L S L A A S V - H P L D D N S H I - S D - V L L P Q F D I S L W M I T P I F S L I E S C C L S L T . . . . . . 91317 TCATCCAAGATGTCATCAACTTCATATGCAGCAATATTGAGTTTCTGCAACCAATTTTCT S S K M S S T S Y A A I L S F C N Q F S H P R C H Q L H M Q Q Y - V S A T N F L F I Q D V I N F I C S N I E F L Q P I F . . . . . . 91257 AGTGGCTTGTCCTTCAGTTGCTTCTCCTGAGCATCTTCAAGCACAGCTTGGATCGTAGTA S G L S F S C F S - A S S S T A W I V V V A C P S V A S P E H L Q A Q L G S - - - W L V L Q L L L L S I F K H S L D R S . . . . . . 91197 AACGTGCTTTTAAGATTTTCAAACTCGTTCTTAAAACCAAAAAACAATCCAAGTTCCTCT N V L L R F S N S F L K P K N N P S S S T C F - D F Q T R S - N Q K T I Q V P L K R A F K I F K L V L K T K K Q S K F L . . . . . . 91137 TGTATGAAAGAAGTCAAATTTTTCAACAAAATTTGAAGGAAAGCTTCAGCCATGTAT C M K E V K F F N K I - R K A S A M Y V - K K S N F S T K F E G K L Q P C L Y E R S Q I F Q Q N L K E S F S H V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 93027 94284 AGS-1 (93027 93760) SCR (e 0.997) Exon 1 93027 93760 ( 734 n); score: 0.997 PGS (93027 93760) SGN-U331884+ 3-phase translation of AGS-1 (+strand): . . . . . . 93027 GTTTGTGTCGTTGAGGGTGCTTAATCTAAGTAATTTAAGTCTTAAGCGTTTACCGTCTTC V C V V E G A - S K - F K S - A F T V F F V S L R V L N L S N L S L K R L P S S L C R - G C L I - V I - V L S V Y R L . . . . . . 93087 CATTGGAGATCTAGTACATTTAAGATACTTGAACCTCTCTCTCAATAACATGCGTAGTCT H W R S S T F K I L E P L S Q - H A - S I G D L V H L R Y L N L S L N N M R S L P L E I - Y I - D T - T S L S I T C V V . . . . . . 93147 TCCAGAGCAGTTATGCAAGCTTCAAAATCTGCAGACTCTTAATCTACAGAATTGCTGGTC S R A V M Q A S K S A D S - S T E L L V P E Q L C K L Q N L Q T L N L Q N C W S F Q S S Y A S F K I C R L L I Y R I A G . . . . . . 93207 ACTTTGTTGTTTGCCAAATCAAACAAGTCAACTTAGCAGTCTCAGAAATCTTTTACTTGA T L L F A K S N K S T - Q S Q K S F T - L C C L P N Q T S Q L S S L R N L L L D H F V V C Q I K Q V N L A V S E I F Y L . . . . . . 93267 TGTTTGCTTTGAATTGGATTCTATGCCACCAAGGATAGGATCTTTGACATGCCTTAAGAC C L L - I G F Y A T K D R I F D M P - D V C F E L D S M P P R I G S L T C L K T M F A L N W I L C H Q G - D L - H A L R . . . . . . 93327 TCTAAGTAGATTTGCAGTGGGGAGGAGGAAAAGTTGTCCACTTGGTGAATTACGAAACCT S K - I C S G E E E K L S T W - I T K P L S R F A V G R R K S C P L G E L R N L L - V D L Q W G G G K V V H L V N Y E T . . . . . . 93387 GAATCTGTATGGGTCAATTGAAATCACGCATCTTGAGAGAGTGAAGAATGATAGGGATGC E S V W V N - N H A S - E S E E - - G C N L Y G S I E I T H L E R V K N D R D A - I C M G Q L K S R I L R E - R M I G M . . . . . . 93447 AAAAGAAGCCAATTTATCTGCAGAAGAAAATCTGCATTCTTTAAGCATGGAATGGAAAGG K R S Q F I C R R K S A F F K H G M E R K E A N L S A E E N L H S L S M E W K G Q K K P I Y L Q K K I C I L - A W N G K . . . . . . 93507 ACCACATAGATATGAATCAGAAGAAGTTGAAGTGCTTGAAGCCCTCAAACCACACTCCAA T T - I - I R R S - S A - S P Q T T L Q P H R Y E S E E V E V L E A L K P H S N D H I D M N Q K K L K C L K P S N H T P . . . . . . 93567 TATGACTTGTTTAACAATCACTGGCTTCAGAGGAATCCGTCTCCCAGAGTGGATGAATCA Y D L F N N H W L Q R N P S P R V D E S M T C L T I T G F R G I R L P E W M N H I - L V - Q S L A S E E S V S Q S G - I . . . . . . 93627 CTCAGTTTTGAAAAATGTTGTCTCTATTGCAATTAGAGGTTGTGAAAACTGCTCATGCTT L S F E K C C L Y C N - R L - K L L M L S V L K N V V S I A I R G C E N C S C L T Q F - K M L S L L Q L E V V K T A H A . . . . . . 93687 ACCACCGTTTGGTGATCTGCCTTGTCTAGAAAGTCTAGAGTTATGGAGTGGGTCTGCGGA T T V W - S A L S R K S R V M E W V C G P P F G D L P C L E S L E L W S G S A E Y H R L V I C L V - K V - S Y G V G L R . . 93747 GGTGGAGTATGTTG G G V C V E Y V R W S M L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-12_AGS-1_PPS_1 (93028 93759) (frame '2'; 732 bp, 244 residues) 1 FVSLRVLNLS NLSLKRLPSS IGDLVHLRYL NLSLNNMRSL PEQLCKLQNL QTLNLQNCWS 61 LCCLPNQTSQ LSSLRNLLLD VCFELDSMPP RIGSLTCLKT LSRFAVGRRK SCPLGELRNL 121 NLYGSIEITH LERVKNDRDA KEANLSAEEN LHSLSMEWKG PHRYESEEVE VLEALKPHSN 181 MTCLTITGFR GIRLPEWMNH SVLKNVVSIA IRGCENCSCL PPFGDLPCLE SLELWSGSAE 241 VEYV 3-phase translation of AGS-1 (-strand): . . . . . . 93760 CAACATACTCCACCTCCGCAGACCCACTCCATAACTCTAGACTTTCTAGACAAGGCAGAT Q H T P P P Q T H S I T L D F L D K A D N I L H L R R P T P - L - T F - T R Q I T Y S T S A D P L H N S R L S R Q G R . . . . . . 93700 CACCAAACGGTGGTAAGCATGAGCAGTTTTCACAACCTCTAATTGCAATAGAGACAACAT H Q T V V S M S S F H N L - L Q - R Q H T K R W - A - A V F T T S N C N R D N I S P N G G K H E Q F S Q P L I A I E T T . . . . . . 93640 TTTTCAAAACTGAGTGATTCATCCACTCTGGGAGACGGATTCCTCTGAAGCCAGTGATTG F S K L S D S S T L G D G F L - S Q - L F Q N - V I H P L W E T D S S E A S D C F F K T E - F I H S G R R I P L K P V I . . . . . . 93580 TTAAACAAGTCATATTGGAGTGTGGTTTGAGGGCTTCAAGCACTTCAACTTCTTCTGATT L N K S Y W S V V - G L Q A L Q L L L I - T S H I G V W F E G F K H F N F F - F V K Q V I L E C G L R A S S T S T S S D . . . . . . 93520 CATATCTATGTGGTCCTTTCCATTCCATGCTTAAAGAATGCAGATTTTCTTCTGCAGATA H I Y V V L S I P C L K N A D F L L Q I I S M W S F P F H A - R M Q I F F C R - S Y L C G P F H S M L K E C R F S S A D . . . . . . 93460 AATTGGCTTCTTTTGCATCCCTATCATTCTTCACTCTCTCAAGATGCGTGATTTCAATTG N W L L L H P Y H S S L S Q D A - F Q L I G F F C I P I I L H S L K M R D F N - K L A S F A S L S F F T L S R C V I S I . . . . . . 93400 ACCCATACAGATTCAGGTTTCGTAATTCACCAAGTGGACAACTTTTCCTCCTCCCCACTG T H T D S G F V I H Q V D N F S S S P L P I Q I Q V S - F T K W T T F P P P H C D P Y R F R F R N S P S G Q L F L L P T . . . . . . 93340 CAAATCTACTTAGAGTCTTAAGGCATGTCAAAGATCCTATCCTTGGTGGCATAGAATCCA Q I Y L E S - G M S K I L S L V A - N P K S T - S L K A C Q R S Y P W W H R I Q A N L L R V L R H V K D P I L G G I E S . . . . . . 93280 ATTCAAAGCAAACATCAAGTAAAAGATTTCTGAGACTGCTAAGTTGACTTGTTTGATTTG I Q S K H Q V K D F - D C - V D L F D L F K A N I K - K I S E T A K L T C L I W N S K Q T S S K R F L R L L S - L V - F . . . . . . 93220 GCAAACAACAAAGTGACCAGCAATTCTGTAGATTAAGAGTCTGCAGATTTTGAAGCTTGC A N N K V T S N S V D - E S A D F E A C Q T T K - P A I L - I K S L Q I L K L A G K Q Q S D Q Q F C R L R V C R F - S L . . . . . . 93160 ATAACTGCTCTGGAAGACTACGCATGTTATTGAGAGAGAGGTTCAAGTATCTTAAATGTA I T A L E D Y A C Y - E R G S S I L N V - L L W K T T H V I E R E V Q V S - M Y H N C S G R L R M L L R E R F K Y L K C . . . . . . 93100 CTAGATCTCCAATGGAAGACGGTAAACGCTTAAGACTTAAATTACTTAGATTAAGCACCC L D L Q W K T V N A - D L N Y L D - A P - I S N G R R - T L K T - I T - I K H P T R S P M E D G K R L R L K L L R L S T . . 93040 TCAACGACACAAAC S T T Q Q R H K L N D T N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-12_AGS-1_PPS_1 (93623 93234) (frame '0'; 387 bp, 129 residues) 1 FIHSGRRIPL KPVIVKQVIL ECGLRASSTS TSSDSYLCGP FHSMLKECRF SSADKLASFA 61 SLSFFTLSRC VISIDPYRFR FRNSPSGQLF LLPTANLLRV LRHVKDPILG GIESNSKQTS 121 SKRFLRLLS- AGS-2 (93836 94284) SCR (e 0.777) Exon 1 93836 94284 ( 449 n); score: 0.777 PGS (93836 94284) SGN-U326226+ 3-phase translation of AGS-2 (+strand): . . . . . . 93836 AAGGATTGCTGCAATTCCCCGTGCTTGAAGAGTTGACAATTAGGTGTTGTCCTGTGTTTG K D C C N S P C L K S - Q L G V V L C L R I A A I P R A - R V D N - V L S C V C G L L Q F P V L E E L T I R C C P V F . . . . . . 93896 TTATTCCGACCCTTTCTTCTGTCAAGAAATTGGTAGTTTATGGGGACAAGTCAGATGCAA L F R P F L L S R N W - F M G T S Q M Q Y S D P F F C Q E I G S L W G Q V R C N V I P T L S S V K K L V V Y G D K S D A . . . . . . 93956 CAGTTTTGAGGTCCATATATAATCTTAGGGCTCTTACTTCCCTCACCATTAGCCTTAACT Q F - G P Y I I L G L L L P S P L A L T S F E V H I - S - G S Y F P H H - P - L T V L R S I Y N L R A L T S L T I S L N . . . . . . 94016 CCATAGCTACTTCGCTCCCAGAAGAGATGTTCAAAAGCCTTGCAAATTCTCAAATACTTG P - L L R S Q K R C S K A L Q I L K Y L H S Y F A P R R D V Q K P C K F S N T W S I A T S L P E E M F K S L A N S Q I L . . . . . . 94076 GAAATCTCTTTCTTCGACAATCTCAAAGAGCTGCCAAACAGCCTGGCTAGTCTCAATGCT E I S F F D N L K E L P N S L A S L N A K S L S S T I S K S C Q T A W L V S M L G N L F L R Q S Q R A A K Q P G - S Q C . . . . . . 94136 TTGAAGCATCTGGAGATTAGTTGTTGTCCCAAACTGGAGAGTCTCCCCGAGGAAGGGGTG L K H L E I S C C P K L E S L P E E G V - S I W R L V V V P N W R V S P R K G - F E A S G D - L L S Q T G E S P R G R G . . . . . . 94196 AAAGGTTTAACTTCACTCACACAGTTATCCATTACATACTGTGAGATGCTAAAACGTTTA K G L T S L T Q L S I T Y C E M L K R L K V - L H S H S Y P L H T V R C - N V Y E R F N F T H T V I H Y I L - D A K T F . . . 94256 CCAGAGGGATTGCAGCAACTAACAAGACT P E G L Q Q L T R Q R D C S N - Q D T R G I A A T N K T Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-12_AGS-2_PPS_1 (93838 94125) (frame '0'; 285 bp, 95 residues) 1 GLLQFPVLEE LTIRCCPVFV IPTLSSVKKL VVYGDKSDAT VLRSIYNLRA LTSLTISLNS 61 IATSLPEEMF KSLANSQILG NLFLRQSQRA AKQPG- >C08SLe0082C24.1+_PGL-12_AGS-2_PPS_2 (94022 94282) (frame '1'; 261 bp, 87 residues) 1 LLRSQKRCSK ALQILKYLEI SFFDNLKELP NSLASLNALK HLEISCCPKL ESLPEEGVKG 61 LTSLTQLSIT YCEMLKRLPE GLQQLTR 3-phase translation of AGS-2 (-strand): . . . . . . 94284 AGTCTTGTTAGTTGCTGCAATCCCTCTGGTAAACGTTTTAGCATCTCACAGTATGTAATG S L V S C C N P S G K R F S I S Q Y V M V L L V A A I P L V N V L A S H S M - W S C - L L Q S L W - T F - H L T V C N . . . . . . 94224 GATAACTGTGTGAGTGAAGTTAAACCTTTCACCCCTTCCTCGGGGAGACTCTCCAGTTTG D N C V S E V K P F T P S S G R L S S L I T V - V K L N L S P L P R G D S P V W G - L C E - S - T F H P F L G E T L Q F . . . . . . 94164 GGACAACAACTAATCTCCAGATGCTTCAAAGCATTGAGACTAGCCAGGCTGTTTGGCAGC G Q Q L I S R C F K A L R L A R L F G S D N N - S P D A S K H - D - P G C L A A G T T T N L Q M L Q S I E T S Q A V W Q . . . . . . 94104 TCTTTGAGATTGTCGAAGAAAGAGATTTCCAAGTATTTGAGAATTTGCAAGGCTTTTGAA S L R L S K K E I S K Y L R I C K A F E L - D C R R K R F P S I - E F A R L L N L F E I V E E R D F Q V F E N L Q G F - . . . . . . 94044 CATCTCTTCTGGGAGCGAAGTAGCTATGGAGTTAAGGCTAATGGTGAGGGAAGTAAGAGC H L F W E R S S Y G V K A N G E G S K S I S S G S E V A M E L R L M V R E V R A T S L L G A K - L W S - G - W - G K - E . . . . . . 93984 CCTAAGATTATATATGGACCTCAAAACTGTTGCATCTGACTTGTCCCCATAAACTACCAA P K I I Y G P Q N C C I - L V P I N Y Q L R L Y M D L K T V A S D L S P - T T N P - D Y I W T S K L L H L T C P H K L P . . . . . . 93924 TTTCTTGACAGAAGAAAGGGTCGGAATAACAAACACAGGACAACACCTAATTGTCAACTC F L D R R K G R N N K H R T T P N C Q L F L T E E R V G I T N T G Q H L I V N S I S - Q K K G S E - Q T Q D N T - L S T . . . 93864 TTCAAGCACGGGGAATTGCAGCAATCCTT F K H G E L Q Q S S S T G N C S N P L Q A R G I A A I L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-12_AGS-2_PPS_1 (94284 93946) (frame '1'; 336 bp, 112 residues) 1 SLVSCCNPSG KRFSISQYVM DNCVSEVKPF TPSSGRLSSL GQQLISRCFK ALRLARLFGS 61 SLRLSKKEIS KYLRICKAFE HLFWERSSYG VKANGEGSKS PKIIYGPQNC CI- PGL 13 (+ strand): 95097 107479 AGS-1 (95097 95120,96256 96295,96539 96561,97440 97459,98993 99206) SCR (e 0.708 d 0.000 a 0.920,e 0.637 d 0.000 a 0.160,e 0.587 d 0.900 a 0.000,e 0.700 d 0.900 a 0.000,e 0.836) Exon 1 95097 95120 ( 24 n); score: 0.708 Intron 1 95121 96255 (1135 n); Pd: 0.000 Pa: 0.920 Exon 2 96256 96295 ( 40 n); score: 0.637 Intron 2 96296 96538 ( 243 n); Pd: 0.000 Pa: 0.160 Exon 3 96539 96561 ( 23 n); score: 0.587 Intron 3 96562 97439 ( 878 n); Pd: 0.900 Pa: 0.000 Exon 4 97440 97459 ( 20 n); score: 0.700 Intron 4 97460 98992 (1533 n); Pd: 0.900 Pa: 0.000 Exon 5 98993 99206 ( 214 n); score: 0.836 PGS (95097 95120,96256 96295,96539 96561,97440 97459,98993 99206) SGN-U339740+ 3-phase translation of AGS-1 (+strand): . . . : . . . 95097 CTATTATATTTTCTATTAAATACT : ATTTACGGTTAATTTCTATCTATGTGATTGGATTTA L L Y F L L N T : I Y G - F L S M - L D L Y Y I F Y - I L : F T V N F Y L C D W I - I I F S I K Y : Y L R L I S I Y V I G F . : . . : . . : . 96292 GAAG : ATGGATATATAAAGAATGACTAA : TAATAAAGCTTTCATTAAAT : AGAAAGGATGGGC E : D G Y I K N D - : - - S F H - I : E R M G K : M D I - R M T N : N K A F I K : - K G W A R R : W I Y K E - L : I I K L S L N : R K D G . . . . . . 99006 CCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAATCCTATTCTG P S L L G R S L A L Y I D A M G N P I L Q A C - G V A - H Y I - T L W E I L F C P K P V R A - L S T I Y R R Y G K S Y S . . . . . . 99066 TAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCA - F C F C L S I I K L L P L F P W T - P N S V F A S P - - N C S L S S R G R S Q V I L F L P L H N K T A P S L P V D V A . . . . . . 99126 ATTTATTGGTGAACCACGTAAACTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATT I Y W - T T - T V V L F F A F I F S R I F I G E P R K L L S C F S H L Y F L V L N L L V N H V N C C L V F R I Y I F S Y . . . 99186 ATCTCAAATTCCGCACAACAA I S N S A Q Q S Q I P H N Y L K F R T T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (98960 99019,100326 100371,101440 101499,102226 102246,103316 103530,104460 104529,104964 104972,106588 106605,107455 107479) SCR (e 0.817 d 0.876 a 0.000,e 0.478 d 0.264 a 0.000,e 0.517 d 0.900 a 0.988,e 0.667 d 0.000 a 0.000,e 0.905 d 0.000 a 0.000,e 0.586 d 0.000 a 0.887,e 0.778 d 0.000 a 0.931,e 0.667 d 0.000 a 0.541,e 0.720) Exon 1 98960 99019 ( 60 n); score: 0.817 Intron 1 99020 100325 (1306 n); Pd: 0.876 Pa: 0.000 Exon 2 100326 100371 ( 46 n); score: 0.478 Intron 2 100372 101439 (1068 n); Pd: 0.264 Pa: 0.000 Exon 3 101440 101499 ( 60 n); score: 0.517 Intron 3 101500 102225 ( 726 n); Pd: 0.900 Pa: 0.988 Exon 4 102226 102246 ( 21 n); score: 0.667 Intron 4 102247 103315 (1069 n); Pd: 0.000 Pa: 0.000 Exon 5 103316 103530 ( 215 n); score: 0.905 Intron 5 103531 104459 ( 929 n); Pd: 0.000 Pa: 0.000 Exon 6 104460 104529 ( 70 n); score: 0.586 Intron 6 104530 104963 ( 434 n); Pd: 0.000 Pa: 0.887 Exon 7 104964 104972 ( 9 n); score: 0.778 Intron 7 104973 106587 (1615 n); Pd: 0.000 Pa: 0.931 Exon 8 106588 106605 ( 18 n); score: 0.667 Intron 8 106606 107454 ( 849 n); Pd: 0.000 Pa: 0.541 Exon 9 107455 107479 ( 25 n); score: 0.720 PGS (98960 99019,100326 100371,101440 101499,102226 102246,103316 103530,104460 104529,104964 104972,106588 106605,107455 107479) SGN-U314435+ PGS (103319 103515) SGN-U339740+ 3-phase translation of AGS-2 (+strand): . . . . . . : 98960 TGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGATGGGCCCAAGCCTGTTAGG : C - M P - I G P A T N R K D G P K P V R : V E C L E S D P L Q T E R M G P S L L G : L N A L N R T R Y K Q K G W A Q A C - : . . . . . : . 100326 GGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGG : CTGAAGAGGAGGAT G F S W S G K D G V L R V W K : A E E E D D S A G R E K M E S C G S G R : L K R R I G I Q L V G K R W S L A G L E G : - R G G . . . . . : . 101454 CAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAG : ATGATATGTTGATA Q E P Q T E T D I P E S M P S : D D M L I K S H R Q K L I F Q N L C H Q : M I C - - S R A T D R N - Y S R I Y A I R : - Y V D . : . . . . . 102240 GCTGCAA : GACGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGG A A : R R A Q A C - G V A - H Y I - T L W L Q : D G P K P V R A - L S T I Y R R Y G S C K : T G P S L L G R S L A L Y I D A M . . . . . . 103369 GAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCC E T L F C N S V F A S P - - N C S L S S K P Y S V I L F L P L H N K T A P S L P G N P I L - F C F C L S I I K L L P L F . . . . . . 103429 CATGGACGTAGCCAATTTATTGGTGAACCACGTAAACTGTTGTCTTGTTTTTCGCATTTA H G R S Q F I G E P R K L L S C F S H L M D V A N L L V N H V N C C L V F R I Y P W T - P I Y W - T T - T V V L F F A F . . . . . : . 103489 TATTTTCTCGTATTATCTCAAATTCCGCACAACAACAGCAAT : ATTTAGGGCTATCAGCAA Y F L V L S Q I P H N N S N : I - G Y Q Q I F S Y Y L K F R T T T A I : F R A I S K I F S R I I S N S A Q Q Q Q : Y L G L S A . . . . . . : 104478 ATTAAATTTATAATAAATTAATATTTAACTAATATTTTTAATAAATTAATAT : GTACTCAT I K F I I N - Y L T N I F N K L I : C T H L N L - - I N I - L I F L I N - Y : V L I N - I Y N K L I F N - Y F - - I N M : Y S . : . : . . . 104972 T : GGATCCTAGTAATGTATA : AACTCAACCTTCTATAATACAGGAA : W I L V M Y : K L N L L - Y R : G S - - C I : N S T F Y N T G L : D P S N V - : T Q P S I I Q E Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-13_AGS-2_PPS_1 (103343 103530,104460 104490) (frame '2'; 216 bp, 72 residues) 1 LSTIYRRYGK PYSVILFLPL HNKTAPSLPM DVANLLVNHV NCCLVFRIYI FSYYLKFRTT 61 TAIFRAISKL NL- AGS-3 (98960 98983,103325 103514) SCR (e 0.875 d 0.000 a 0.000,e 0.826) Exon 1 98960 98983 ( 24 n); score: 0.875 Intron 1 98984 103324 (4341 n); Pd: 0.000 Pa: 0.000 Exon 2 103325 103514 ( 190 n); score: 0.826 PGS (98960 98983,103325 103514) SGN-U339741+ 3-phase translation of AGS-3 (+strand): . . . : . . . 98960 TGTTGAATGCCTTGAATCGGACCC : AAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGA C - M P - I G P : K P V R A - L S T I Y R V E C L E S D P : S L L G R S L A L Y I D L N A L N R T : Q A C - G V A - H Y I - . . . . . . 103361 CGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCC R Y G K P Y S V I L F L P L H N K T A P A M G N P I L - F C F C L S I I K L L P T L W E T L F C N S V F A S P - - N C S . . . . . . 103421 TCTCTTCCCATGGACGTAGCCAATTTATTGGTGAACCACGTAAACTGTTGTCTTGTTTTT S L P M D V A N L L V N H V N C C L V F L F P W T - P I Y W - T T - T V V L F F L S S H G R S Q F I G E P R K L L S C F . . . . 103481 CGCATTTATATTTTCTCGTATTATCTCAAATTCC R I Y I F S Y Y L K F A F I F S R I I S N S S H L Y F L V L S Q I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (101366 102014) SCR (e 0.989) Exon 1 101366 102014 ( 649 n); score: 0.989 PGS (101366 102014) SGN-U330105+ 3-phase translation of AGS-4 (+strand): . . . . . . 101366 TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAG Y V R N W E S - Q T G G V S S H S E R E T S E T G S L D K Q V E F Q V I Q N E R R Q K L G V L T N R W S F K S F R T R . . . . . . 101426 AGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGA R F K G T - R G G S R A T D R N - Y S R D L K E P E E E D Q E P Q T E T D I P E E I - R N L K R R I K S H R Q K L I F Q . . . . . . 101486 ATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGT I Y A I R Y P S E Y S S R S A K E G W S S M P S D I H Q S I A Q D R P R R V G V N L C H Q I S I R V - L K I G Q G G L E . . . . . . 101546 TCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGA S A T Y E V W F - G H G G L C T A G C - R P P T R Y G F E D M V G Y A L Q V A E F G H L R G M V L R T W W V M H C R L L . . . . . . 101606 AGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGA R G R Y I - A V Y L Q R S H F K F - F - E V D T S E P S T Y K E A I L S S D S E K R - I H L S R L L T K K P F - V L I L . . . . . . 101666 AAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGA K M V C R Y G R - D G V P T Q E S D M G K W F A A M G D E M E S L H K N Q T W D K N G L P L W E M R W S P Y T R I R H G . . . . . . 101726 TCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAA S G H T A F G E K D Y Y L Q M G F Q E E L V I Q P S G R K I I T C K W V F K K K I W S Y S L R G E R L L L A N G F S R R . . . . . . 101786 GGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTT G R D I T S R R S Q V - S Q G C C Q R F E G I S P A E G V K Y K A R V V A R G F R K G Y H Q Q K E S S I K P G L L P E V . . . . . . 101846 CAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTC Q P K R G S G L Q - D L L T S G Q T Y F N Q R E G V D Y N E I F S P V V R H T S S T K E R E W T T M R S S H Q W S D I L . . . . . . 101906 CATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGT H P S V T S D S C T S E S G A - T T - C I R V L L A I V A H Q N L E L E Q L D V P S E C Y - R - L H I R I W S L N N L M . . . . . 101966 GAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT E D S V S T W R V G G R D I H D K T A F L H G E L E E E I Y M T - R Q R F Y M E S W R K R Y T - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-13_AGS-4_PPS_1 (101367 102014) (frame '2'; 648 bp, 216 residues) 1 TSETGSLDKQ VEFQVIQNER DLKEPEEEDQ EPQTETDIPE SMPSDIHQSI AQDRPRRVGV 61 RPPTRYGFED MVGYALQVAE EVDTSEPSTY KEAILSSDSE KWFAAMGDEM ESLHKNQTWD 121 LVIQPSGRKI ITCKWVFKKK EGISPAEGVK YKARVVARGF NQREGVDYNE IFSPVVRHTS 181 IRVLLAIVAH QNLELEQLDV KTAFLHGELE EEIYMT 3-phase translation of AGS-4 (-strand): . . . . . . 102014 AGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTG S H V Y L F L Q L S M - K R C L H I K L V M Y I S S S N S P C R N A V F T S S C S C I S L P P T L H V E T L S S H Q V . . . . . . 101954 TTCAAGCTCCAGATTCTGATGTGCAACTATCGCTAGTAACACTCGGATGGAAGTATGTCT F K L Q I L M C N Y R - - H S D G S M S S S S R F - C A T I A S N T R M E V C L V Q A P D S D V Q L S L V T L G W K Y V . . . . . . 101894 GACCACTGGTGAGAAGATCTCATTGTAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGC D H W - E D L I V V H S L S L V E T S G T T G E K I S L - S T P S L W L K P L A - P L V R R S H C S P L P L F G - N L W . . . . . . 101834 AACAACCCTGGCTTTATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAA N N P G F I L D S F C W - Y P F L L L E T T L A L Y L T P S A G D I P S F F L K Q Q P W L Y T - L L L L V I S L P S S - . . . . . . 101774 AACCCATTTGCAAGTAATAATCTTTCTCCCCGAAGGCTGTATGACCAGATCCCATGTCTG N P F A S N N L S P R R L Y D Q I P C L T H L Q V I I F L P E G C M T R S H V - K P I C K - - S F S P K A V - P D P M S . . . . . . 101714 ATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCGGCAAACCATTTTTCAGAATCAGA I L V - G L H L I S H S G K P F F R I R F L C R D S I S S P I A A N H F S E S E D S C V G T P S H L P - R Q T I F Q N Q . . . . . . 101654 ACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGTATCTACCTCTTCAGCAACCTG T - N G F F V S R R L R C I Y L F S N L L K M A S L - V D G S D V S T S S A T C N L K W L L C K - T A Q M Y L P L Q Q P . . . . . . 101594 CAGTGCATAACCCACCATGTCCTCAAAACCATACCTCGTAGGTGGCCGAACTCCAACCCT Q C I T H H V L K T I P R R W P N S N P S A - P T M S S K P Y L V G G R T P T L A V H N P P C P Q N H T S - V A E L Q P . . . . . . 101534 CCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATC P W P I L S Y T L M D I - W H R F W N I L G R S - A I L - W I S D G I D S G I S S L A D L E L Y S D G Y L M A - I L E Y . . . . . . 101474 AGTTTCTGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCTCTCTCGTTCTG S F C L W L L I L L F R F L - I S L V L V S V C G S - S S S S G S F K S L S F - Q F L S V A L D P P L Q V P L N L S R S . . . . . 101414 AATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTA N D L K L H L F V K T P S F - R M T - N S T C L S R L P V S D V E - L E T P P V C Q D S Q F L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (102024 102886) SCR (e 0.986) Exon 1 102024 102886 ( 863 n); score: 0.986 PGS (102024 102886) SGN-U345812+ 3-phase translation of AGS-5 (+strand): . . . . . . 102024 GGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGA G F Q V P G K E N H V C K L K K S L Y G V S K F Q G R K I T S A S - R S P Y M D F P S S R E G K S R L Q V E E V L I W . . . . . . 102084 CTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGC L K Q S P R Q W Y K R F D S Y M V K L G L S S L Q G S G I K G L T A I W - S W A T - A V S K A V V - K V - Q L Y G E V G . . . . . . 102144 TATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTC Y T R S S Y D C C V Y Y N R L N D D S F I L G A H M I V V S T T I G S M M I H S L Y S E L I - L L C L L Q - A Q - - F I . . . . . . 102204 ATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATT I Y L V L Y V D D M L I A A K K K Y D I S I W C F M - M I C - - L Q R R S M T F H L S G A L C R - Y V D S C K E E V - H . . . . . . 102264 CAAAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGG Q K L K G L L S A E F E M K D L G A A R K S - R V Y L V L S L R - R I W E P L G S K A E G F T - C - V - D E G S G S R S . . . . . . 102324 AAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAG K I L G M E I I R D R E R R K L F L S Q R F - G W R S L E T E R E G N F S C H R E D F R D G D H - R Q R E K E T F L V T . . . . . . 102384 AGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGAT R S Y I Q K V L A R F G M S S S K P I D E A T F R R S W R G L A C L H L S P L I E K L H S E G L G E V W H V F I - A H - . . . . . . 102444 ACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAG T P S A A N I H L T A M F A P Q S E E E P P V L P I S I S L P C S L H S Q K K R Y P Q C C Q Y P S H C H V R S T V R R R . . . . . . 102504 AAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATG K E Y M S R V P Y A S A V G S L M Y A M R S I C H E S L M P V P - E V - C M L W E G V Y V T S P L C Q C R R K F N V C Y . . . . . . 102564 GTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGAACAA V C T R P D L A H A V S V V S R F M E Q S V Q G Q I - H M Q S V - - A D S W N N G L Y K A R F S T C S Q C S E Q I H G T . . . . . . 102624 CCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCTGGTACCTTAGAGGTACATCT P G R E H W Q A V K R I F W Y L R G T S Q G E N I G R L - R E F S G T L E V H L T R E R T L A G C E E N F L V P - R Y I . . . . . . 102684 GACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCA D V G L I Y G G D T Q C L V T G Y S D S T L V S F M E V I L S A W L L A I L I Q - R W S H L W R - Y S V L G Y W L F - F . . . . . . 102744 GACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGA D Y A G D V D T R R S M T G Y V F T L G T M L E M L T Q E D R - L A M C L P L E R L C W R C - H K K I D D W L C V Y P W . . . . . . 102804 GGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAA G S V V S W K A T L Q P T V T L S T T E D L S S V G R Q L C N L Q - L C L L R K R I C R Q L E G N F A T Y S D F V Y Y G . . . 102864 GCGGAGTACATGGCCTTGACAGA A E Y M A L T R S T W P - Q S G V H G L D R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-13_AGS-5_PPS_1 (102024 102884) (frame '1'; 861 bp, 287 residues) 1 GFQVPGKENH VCKLKKSLYG LKQSPRQWYK RFDSYMVKLG YTRSSYDCCV YYNRLNDDSF 61 IYLVLYVDDM LIAAKKKYDI QKLKGLLSAE FEMKDLGAAR KILGMEIIRD RERRKLFLSQ 121 RSYIQKVLAR FGMSSSKPID TPSAANIHLT AMFAPQSEEE KEYMSRVPYA SAVGSLMYAM 181 VCTRPDLAHA VSVVSRFMEQ PGREHWQAVK RIFWYLRGTS DVGLIYGGDT QCLVTGYSDS 241 DYAGDVDTRR SMTGYVFTLG GSVVSWKATL QPTVTLSTTE AEYMALT 3-phase translation of AGS-5 (-strand): . . . . . . 102886 TCTGTCAAGGCCATGTACTCCGCTTCCGTAGTAGACAAAGTCACTGTAGGTTGCAAAGTT S V K A M Y S A S V V D K V T V G C K V L S R P C T P L P - - T K S L - V A K L C Q G H V L R F R S R Q S H C R L Q S . . . . . . 102826 GCCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGATCTTCTT A F Q L T T D P P R V N T - P V I D L L P S N - R Q I L Q G - T H S Q S S I F L C L P T D D R S S K G K H I A S H R S S . . . . . . 102766 GTGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGAGTATCA V S T S P A - S E S E - P V T K H - V S C Q H L Q H S L N Q N S Q - P S T E Y H C V N I S S I V - I R I A S N Q A L S I . . . . . . 102706 CCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCAGAAAATTCTCTTCACA P P - M R P T S D V P L R Y Q K I L F T L H K - D Q R Q M Y L - G T R K F S S Q T S I N E T N V R C T S K V P E N S L H . . . . . . 102646 GCCTGCCAATGTTCTCTCCCTGGTTGTTCCATGAATCTGCTCACTACACTGACTGCATGT A C Q C S L P G C S M N L L T T L T A C P A N V L S L V V P - I C S L H - L H V S L P M F S P W L F H E S A H Y T D C M . . . . . . 102586 GCTAAATCTGGCCTTGTACAGACCATAGCATACATTAAACTTCCTACGGCACTGGCATAA A K S G L V Q T I A Y I K L P T A L A - L N L A L Y R P - H T L N F L R H W H K C - I W P C T D H S I H - T S Y G T G I . . . . . . 102526 GGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCGAACATGGCAGTGAGA G T R D I Y S F S S S D C G A N M A V R G L V T Y T P S L L L T V E R T W Q - D R D S - H I L L L F F - L W S E H G S E . . . . . . 102466 TGGATATTGGCAGCACTGGGGGTATCAATGGGCTTAGATGAAGACATGCCAAACCTCGCC W I L A A L G V S M G L D E D M P N L A G Y W Q H W G Y Q W A - M K T C Q T S P M D I G S T G G I N G L R - R H A K P R . . . . . . 102406 AAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTGTCTCTA K T F - M - L L C D K K S F L L S L S L R P S E C S F S V T R K V S F S L C L - Q D L L N V A S L - Q E K F P S L S V S . . . . . . 102346 ATGATCTCCATCCCTAAAATCTTCCGAGCGGCTCCCAGATCCTTCATCTCAAACTCAGCA M I S I P K I F R A A P R S F I S N S A - S P S L K S S E R L P D P S S Q T Q H N D L H P - N L P S G S Q I L H L K L S . . . . . . 102286 CTAAGTAAACCCTTCAGCTTTTGAATGTCATACTTCTTCTTTGCAGCTATCAACATATCA L S K P F S F - M S Y F F F A A I N I S - V N P S A F E C H T S S L Q L S T Y H T K - T L Q L L N V I L L L C S Y Q H I . . . . . . 102226 TCTACATAAAGCACCAGATAGATGAATGAATCATCATTGAGCCTATTGTAGTAGACACAA S T - S T R - M N E S S L S L L - - T Q L H K A P D R - M N H H - A Y C S R H N I Y I K H Q I D E - I I I E P I V V D T . . . . . . 102166 CAATCATATGAGCTCCGAGTATAGCCCAACTTCACCATATAGCTGTCAAACCTTTTATAC Q S Y E L R V - P N F T I - L S N L L Y N H M S S E Y S P T S P Y S C Q T F Y T T I I - A P S I A Q L H H I A V K P F I . . . . . . 102106 CACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACGTGATTT H C L G D C L S P Y K D F F N L Q T - F T A L E T A - V H I R T S S T C R R D F P L P W R L L K S I - G L L Q L A D V I . . . 102046 TCCTTCCCTGGAACTTGGAAACC S F P G T W K P S L E L G N F L P W N L E T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (- strand): 105671 105183 AGS-1 (105671 105183) SCR (e 0.992) Exon 1 105671 105183 ( 489 n); score: 0.992 PGS (105671 105183) SGN-U331167+ 3-phase translation of AGS-1 (-strand): . . . . . . 105671 AAATTTTGGTGGTGTTCATGAAGATGTTTAAAAAATCACGCGATGAGAATGAACAAGCAG K F W W C S - R C L K N H A M R M N K Q N F G G V H E D V - K I T R - E - T S S I L V V F M K M F K K S R D E N E Q A . . . . . . 105611 CTGATGCTGAAAAGAAGAAACTGGAGAAGGAAGCTTTGAAGGAACAAGTGGCTGCTAGTT L M L K R R N W R R K L - R N K W L L V - C - K E E T G E G S F E G T S G C - F A D A E K K K L E K E A L K E Q V A A S . . . . . . 105551 CTTCTGGGAAGAAAGGAGTTGGTGACTCTGATAGAGTAAAACTGAATTTTTTAAATCAGT L L G R K E L V T L I E - N - I F - I S F W E E R S W - L - - S K T E F F K S V S S G K K G V G D S D R V K L N F L N Q . . . . . . 105491 TACATGCTGTGTGAATCAGTTCAAATCGTCCGAAGCTTATACTACTCCATGAACTGCCAG Y M L C E S V Q I V R S L Y Y S M N C Q T C C V N Q F K S S E A Y T T P - T A R L H A V - I S S N R P K L I L L H E L P . . . . . . 105431 AATCAGTCAAAAACTTTTTTTGATGATAGCAGCAGAGCCTAAGAAGGCTCTTTTGATATG N Q S K T F F D D S S R A - E G S F D M I S Q K L F L M I A A E P K K A L L I C E S V K N F F - - - Q Q S L R R L F - Y . . . . . . 105371 CCACTGTACGATTTAAGTTTTATAGTTAGTTATATCTGTACATAATTTCCATAGTTAAGT P L Y D L S F I V S Y I C T - F P - L S H C T I - V L - L V I S V H N F H S - V A T V R F K F Y S - L Y L Y I I S I V K . . . . . . 105311 CGGCATTATTTTTTTGCCATTTTAGAATCGCGCACAATTGCCATTGTTACTACATTTTTG R H Y F F A I L E S R T I A I V T T F L G I I F L P F - N R A Q L P L L L H F C S A L F F C H F R I A H N C H C Y Y I F . . . . . . 105251 TATCTGAATGTGGTAAAAACTGAGACCTCAAGCATTGAAAGGGTTTCCAAGTTGTACATA Y L N V V K T E T S S I E R V S K L Y I I - M W - K L R P Q A L K G F P S C T Y V S E C G K N - D L K H - K G F Q V V H . 105191 TTGAAGTTC L K F - S I E V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 105183 GAACTTCAATATGTACAACTTGGAAACCCTTTCAATGCTTGAGGTCTCAGTTTTTACCAC E L Q Y V Q L G N P F N A - G L S F Y H N F N M Y N L E T L S M L E V S V F T T T S I C T T W K P F Q C L R S Q F L P . . . . . . 105243 ATTCAGATACAAAAATGTAGTAACAATGGCAATTGTGCGCGATTCTAAAATGGCAAAAAA I Q I Q K C S N N G N C A R F - N G K K F R Y K N V V T M A I V R D S K M A K K H S D T K M - - Q W Q L C A I L K W Q K . . . . . . 105303 ATAATGCCGACTTAACTATGGAAATTATGTACAGATATAACTAACTATAAAACTTAAATC I M P T - L W K L C T D I T N Y K T - I - C R L N Y G N Y V Q I - L T I K L K S N N A D L T M E I M Y R Y N - L - N L N . . . . . . 105363 GTACAGTGGCATATCAAAAGAGCCTTCTTAGGCTCTGCTGCTATCATCAAAAAAAGTTTT V Q W H I K R A F L G S A A I I K K S F Y S G I S K E P S - A L L L S S K K V F R T V A Y Q K S L L R L C C Y H Q K K F . . . . . . 105423 TGACTGATTCTGGCAGTTCATGGAGTAGTATAAGCTTCGGACGATTTGAACTGATTCACA - L I L A V H G V V - A S D D L N - F T D - F W Q F M E - Y K L R T I - T D S H L T D S G S S W S S I S F G R F E L I H . . . . . . 105483 CAGCATGTAACTGATTTAAAAAATTCAGTTTTACTCTATCAGAGTCACCAACTCCTTTCT Q H V T D L K N S V L L Y Q S H Q L L S S M - L I - K I Q F Y S I R V T N S F L T A C N - F K K F S F T L S E S P T P F . . . . . . 105543 TCCCAGAAGAACTAGCAGCCACTTGTTCCTTCAAAGCTTCCTTCTCCAGTTTCTTCTTTT S Q K N - Q P L V P S K L P S P V S S F P R R T S S H L F L Q S F L L Q F L L F F P E E L A A T C S F K A S F S S F F F . . . . . . 105603 CAGCATCAGCTGCTTGTTCATTCTCATCGCGTGATTTTTTAAACATCTTCATGAACACCA Q H Q L L V H S H R V I F - T S S - T P S I S C L F I L I A - F F K H L H E H H S A S A A C S F S S R D F L N I F M N T . 105663 CCAAAATTT P K F Q N T K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (- strand): 114583 106977 AGS-1 (114583 114317,114022 113899,112904 112833,111283 111185,110510 110469,110374 110294,110205 110155,110075 109994,109897 109803,107238 107167,107075 106977) SCR (e 1.000 d 0.808 a 0.976,e 1.000 d 0.999 a 0.907,e 1.000 d 0.981 a 0.996,e 1.000 d 0.971 a 1.000,e 1.000 d 0.595 a 0.629,e 1.000 d 0.966 a 1.000,e 1.000 d 0.977 a 0.698,e 0.988 d 0.996 a 0.992,e 1.000 d 0.992 a 0.989,e 1.000 d 0.995 a 0.939,e 1.000) Exon 1 114583 114317 ( 267 n); score: 1.000 Intron 1 114316 114023 ( 294 n); Pd: 0.808 Pa: 0.976 Exon 2 114022 113899 ( 124 n); score: 1.000 Intron 2 113898 112905 ( 994 n); Pd: 0.999 Pa: 0.907 Exon 3 112904 112833 ( 72 n); score: 1.000 Intron 3 112832 111284 (1549 n); Pd: 0.981 Pa: 0.996 Exon 4 111283 111185 ( 99 n); score: 1.000 Intron 4 111184 110511 ( 674 n); Pd: 0.971 Pa: 1.000 Exon 5 110510 110469 ( 42 n); score: 1.000 Intron 5 110468 110375 ( 94 n); Pd: 0.595 Pa: 0.629 Exon 6 110374 110294 ( 81 n); score: 1.000 Intron 6 110293 110206 ( 88 n); Pd: 0.966 Pa: 1.000 Exon 7 110205 110155 ( 51 n); score: 1.000 Intron 7 110154 110076 ( 79 n); Pd: 0.977 Pa: 0.698 Exon 8 110075 109994 ( 82 n); score: 0.988 Intron 8 109993 109898 ( 96 n); Pd: 0.996 Pa: 0.992 Exon 9 109897 109803 ( 95 n); score: 1.000 Intron 9 109802 107239 (2564 n); Pd: 0.992 Pa: 0.989 Exon 10 107238 107167 ( 72 n); score: 1.000 Intron 10 107166 107076 ( 91 n); Pd: 0.995 Pa: 0.939 Exon 11 107075 106977 ( 99 n); score: 1.000 PGS (114583 114317,114022 113899,112904 112833,111283 111185,110510 110469,110374 110294,110205 110155,110075 109994,109897 109803,107238 107167,107075 106977) SGN-U324751+ 3-phase translation of AGS-1 (-strand): . . . . . . 114583 TCCACCACCCCCTAGGCGGGGTTTGACACCCACTCCACCTCCCCCGCCTGGTGGAAAGGG S T T P - A G F D T H S T S P A W W K G P P P P R R G L T P T P P P P P G G K G H H P L G G V - H P L H L P R L V E R . . . . . . 114523 CCTTAGTGTGCCAGCGCCACCACCTCCATCTACCGGACGTGTAAGAGCCTCTGTAGGTTC P - C A S A T T S I Y R T C K S L C R F L S V P A P P P P S T G R V R A S V G S A L V C Q R H H L H L P D V - E P L - V . . . . . . 114463 AACTGCTCTAGGGAAAGGGCGAGGTACAGGAGGCACTTCAATTCCTCCGAAAAAAGCTTC N C S R E R A R Y R R H F N S S E K S F T A L G K G R G T G G T S I P P K K A S Q L L - G K G E V Q E A L Q F L R K K L . . . . . . 114403 ATTGAAGCCCTTACATTGGTCGAAAGTTACACGGGCTATGCAAGGGAGTTTATGGGCTGA I E A L T L V E S Y T G Y A R E F M G - L K P L H W S K V T R A M Q G S L W A D H - S P Y I G R K L H G L C K G V Y G L . . . : . . . 114343 TACACAAAACAAGGAAAATACTTCCAG : AGCACCTGAAATTGATATTACGGAGCTTGAGAA Y T K Q G K Y F Q : S T - N - Y Y G A - E T Q N K E N T S R : A P E I D I T E L E N I H K T R K I L P : E H L K L I L R S L R . . . . . . 113989 TTTGTTTTCAGTGGCTTCAGCTACTGATGGCACTAGCAAAGGTGGAGGTCGACGTGGTTC F V F S G F S Y - W H - Q R W R S T W F L F S V A S A T D G T S K G G G R R G S I C F Q W L Q L L M A L A K V E V D V V . . . . : . . 113929 AAAAATCAACAAACCAGAAAAAGTGCAATTG : ATTGATTTGCGCAGGGCATACAATTGTGA K N Q Q T R K S A I : D - F A Q G I Q L - K I N K P E K V Q L : I D L R R A Y N C E Q K S T N Q K K C N - : L I C A G H T I V . . . . . : . 112875 AATCATGCTTACAAAAATCAAGATTCCCCTGCCTGATATGCTT : AATGCTATTTTGGCTTT N H A Y K N Q D S P A - Y A : - C Y F G F I M L T K I K I P L P D M L : N A I L A L K S C L Q K S R F P C L I C L : M L F W L . . . . . . 111266 GGATTCATCAGCTCTGGACATTGATCAGGTTGAAAATCTGATAAAATTTTGCCCAACAAA G F I S S G H - S G - K S D K I L P N K D S S A L D I D Q V E N L I K F C P T K W I H Q L W T L I R L K I - - N F A Q Q . . . : . . . 111206 AGAAGAAATGGAGACACTGAGG : AACTATAATGGGGACAAGGGGATGCTTGGAAAGTGTGA R R N G D T E : E L - W G Q G D A W K V - E E M E T L R : N Y N G D K G M L G K C E K K K W R H - G : T I M G T R G C L E S V . : . . . . . 110472 GCAG : TTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAGTCCAAGTTACGAGTGTTTTC A : V F P G A D E G S T S - V Q V T S V F Q : F F L E L M K V P R V E S K L R V F S S S : F S W S - - R F H E L S P S Y E C F . . . : . . . 110318 ATTTACTATCACTTTCTCTAATCAG : GTGAAGGACTTGAGAAGTAACCTGAGTACAATTAA I Y Y H F L - S : G E G L E K - P E Y N - F T I T F S N Q : V K D L R S N L S T I N H L L S L S L I R : - R T - E V T - V Q L . . : . . . . 110170 TGATGCTACTAGAGAG : GTGAAAGAATCTGCCAAATTACGTCAGATAATGCAGACCATTCT - C Y - R : G E R I C Q I T S D N A D H S D A T R E : V K E S A K L R Q I M Q T I L M M L L E R : - K N L P N Y V R - C R P F . . . . : . . 110031 AACATTGGGAAATGCTCTGAATCAGGGTACAGCACGAG : GATCTGCTGTAGGGTTCAAGTT N I G K C S E S G Y S T R : I C C R V Q V T L G N A L N Q G T A R : G S A V G F K L - H W E M L - I R V Q H E : D L L - G S S . . . . . . 109875 GGACAGTCTTCTTAAGCTTTCTGACACTCGTGCGAGAAACAACAAAATGACCTTGATGCA G Q S S - A F - H S C E K Q Q N D L D A D S L L K L S D T R A R N N K M T L M H W T V F L S F L T L V R E T T K - P - C . . : . . . . 109815 TTATCTGTGCAAG : CTCCTTGCTGAGAAAATGCCAGAGTTGCTTGATTTTGACAAGGATCT L S V Q : A P C - E N A R V A - F - Q G S Y L C K : L L A E K M P E L L D F D K D L I I C A S : S L L R K C Q S C L I L T R I . . . : . . . 107191 TCTTCACTTGGAAGCTGCTTCTAAG : ATTCAACTGAAGTCTTTGGCTGAAGAAATGCAAGC S S L G S C F - : D S T E V F G - R N A S L H L E A A S K : I Q L K S L A E E M Q A F F T W K L L L R : F N - S L W L K K C K . . . . . . 107040 AGTGAGTAAAGGTCTTGAGAAAGTTGAACAAGAACTTACTGCATCCGACAACGATGGTAC S E - R S - E S - T R T Y C I R Q R W Y V S K G L E K V E Q E L T A S D N D G T Q - V K V L R K L N K N L L H P T T M V . 106980 AATA N I Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-15_AGS-1_PPS_1 (114582 114317,114022 113899,112904 112833,111283 111185,110510 110469,110374 110294,110205 110155,110075 109994,109897 109803,107238 107167,107075 106977) (frame '2'; 1083 bp, 361 residues) 1 PPPPRRGLTP TPPPPPGGKG LSVPAPPPPS TGRVRASVGS TALGKGRGTG GTSIPPKKAS 61 LKPLHWSKVT RAMQGSLWAD TQNKENTSRA PEIDITELEN LFSVASATDG TSKGGGRRGS 121 KINKPEKVQL IDLRRAYNCE IMLTKIKIPL PDMLNAILAL DSSALDIDQV ENLIKFCPTK 181 EEMETLRNYN GDKGMLGKCE QFFLELMKVP RVESKLRVFS FTITFSNQVK DLRSNLSTIN 241 DATREVKESA KLRQIMQTIL TLGNALNQGT ARGSAVGFKL DSLLKLSDTR ARNNKMTLMH 301 YLCKLLAEKM PELLDFDKDL LHLEAASKIQ LKSLAEEMQA VSKGLEKVEQ ELTASDNDGT 361 I PGL 16 (+ strand): 117587 121606 AGS-1 (117587 117613,118380 118405,119484 119527,119806 119863,119898 119927,121408 121606) SCR (e 0.704 d 0.148 a 0.607,e 0.692 d 0.000 a 0.469,e 0.591 d 0.000 a 0.000,e 0.612 d 0.000 a 0.996,e 0.500 d 0.891 a 0.000,e 0.849) Exon 1 117587 117613 ( 27 n); score: 0.704 Intron 1 117614 118379 ( 766 n); Pd: 0.148 Pa: 0.607 Exon 2 118380 118405 ( 26 n); score: 0.692 Intron 2 118406 119483 (1078 n); Pd: 0.000 Pa: 0.469 Exon 3 119484 119527 ( 44 n); score: 0.591 Intron 3 119528 119805 ( 278 n); Pd: 0.000 Pa: 0.000 Exon 4 119806 119863 ( 58 n); score: 0.612 Intron 4 119864 119897 ( 34 n); Pd: 0.000 Pa: 0.996 Exon 5 119898 119927 ( 30 n); score: 0.500 Intron 5 119928 121407 (1480 n); Pd: 0.891 Pa: 0.000 Exon 6 121408 121606 ( 199 n); score: 0.849 PGS (117587 117613,118380 118405,119484 119527,119806 119863,119898 119927,121408 121606) SGN-U340881- 3-phase translation of AGS-1 (+strand): . . . : . . . : 117587 AATCAGCTCGTACAAATTCAAGAAAAT : TTGAAGCAAATTGTATAAAACGAAGT : GAATGAA N Q L V Q I Q E N : L K Q I V - N E V : N E I S S Y K F K K I : - S K L Y K T K : - M K S A R T N S R K : F E A N C I K R S : E - . . . . : . . 119491 GACAAACCGTTTTAGTCTCATTTGTTTTCTAACGTGT : CTTTATATGGGTGCACTAGTACT D K P F - S H L F S N V : S L Y G C T S T T N R F S L I C F L T C : L Y M G A L V L R Q T V L V S F V F - R V : F I W V H - Y . . . . : . . 119829 TGTGTGTTAGTTTTTTTGAAGATATATATGAATAA : GTATACGTGCACCTCATTTATACAT C V L V F L K I Y M N K : Y T C T S F I H V C - F F - R Y I - I : S I R A P H L Y M L C V S F F E D I Y E - : V Y V H L I Y T . : . . . . . 119923 GTCAG : AGGGGTGGACCCACATGGTGTCCGCCAGGTGCTCGAGCACCCATTAACTTCGTTA V R : G V D P H G V R Q V L E H P L T S L S : E G W T H M V S A R C S S T H - L R Y C Q : R G G P T W C P P G A R A P I N F V . . . . . . 121463 CGAAATATATATATCTATGTAGAAATTGGTAGGTATTTGTATAAAATTAACATAGAGCAC R N I Y I Y V E I G R Y L Y K I N I E H E I Y I S M - K L V G I C I K L T - S T T K Y I Y L C R N W - V F V - N - H R A . . . . . . 121523 ACAATGAATAAATCATATAGTTGGCCCAATGATTCTAGGATTGACACTTAAAACTCTTTT T M N K S Y S W P N D S R I D T - N S F Q - I N H I V G P M I L G L T L K T L L H N E - I I - L A Q - F - D - H L K L F . . . 121583 AATGTTATTGTACGAAGGTTCGAA N V I V R R F E M L L Y E G S - C Y C T K V R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-16_AGS-1_PPS_1 (119506 119527,119806 119863,119898 119927,121408 121573) (frame '1'; 273 bp, 91 residues) 1 SHLFSNVSLY GCTSTCVLVF LKIYMNKYTC TSFIHVRGVD PHGVRQVLEH PLTSLRNIYI 61 YVEIGRYLYK INIEHTMNKS YSWPNDSRID T- AGS-2 (119280 119339,119371 119758) SCR (e 0.750 d 0.000 a 0.000,e 0.905) Exon 1 119280 119339 ( 60 n); score: 0.750 Intron 1 119340 119370 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 2 119371 119758 ( 388 n); score: 0.905 PGS (119280 119339,119371 119758) SGN-U315517- 3-phase translation of AGS-2 (+strand): . . . . . . : 119280 TATTTAAATCATGTCCAAATACATAAATGGATCTCTAAACTTGTTGGGGTTTTTCCCTCA : Y L N H V Q I H K W I S K L V G V F P S : I - I M S K Y I N G S L N L L G F F P H : F K S C P N T - M D L - T C W G F S L : . . . . . . 119371 TCATTGAACCACCCATAATTTGTTCTTTTAAAACACTGTTGGTTGATTTTGATCGGCTAT S L N H P - F V L L K H C W L I L I G Y H - T T H N L F F - N T V G - F - S A I I I E P P I I C S F K T L L V D F D R L . . . . . . 119431 TCTATTGTAAATGCCTTTAATTTGTGTTCGAATTGTAATAATTTTGATTGAAGGAATGAA S I V N A F N L C S N C N N F D - R N E L L - M P L I C V R I V I I L I E G M K F Y C K C L - F V F E L - - F - L K E - . . . . . . 119491 GACAAACCGTTTTAGTCTCATTTGTTTTCTAACGTGTTCAAATGACTTAAGTGAAACACA D K P F - S H L F S N V F K - L K - N T T N R F S L I C F L T C S N D L S E T Q R Q T V L V S F V F - R V Q M T - V K H . . . . . . 119551 ATTATTCTCGAACATTTTCAGTATCAATTGGACTAATGACTTCTGGAACAACATATGTAT I I L E H F Q Y Q L D - - L L E Q H M Y L F S N I F S I N W T N D F W N N I C I N Y S R T F S V S I G L M T S G T T Y V . . . . . . 119611 CCTCTATCAATACCCCTTACAAATCTGGTTCCACATCAGACAACAGTGTTTATTTAAATG P L S I P L T N L V P H Q T T V F I - M L Y Q Y P L Q I W F H I R Q Q C L F K W S S I N T P Y K S G S T S D N S V Y L N . . . . . . 119671 GAACAAATTATGGGGGTTCAATGATTCAATAAAAAAATAACGTAGTTGAGGTACCCGAGG E Q I M G V Q - F N K K I T - L R Y P R N K L W G F N D S I K K - R S - G T R G G T N Y G G S M I Q - K N N V V E V P E . . . 119731 GAAAAAAACACAACAAGTTTAAAGATCT E K N T T S L K I K K T Q Q V - R S G K K H N K F K D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-16_AGS-2_PPS_1 (119441 119710) (frame '2'; 267 bp, 89 residues) 1 MPLICVRIVI ILIEGMKTNR FSLICFLTCS NDLSETQLFS NIFSINWTND FWNNICILYQ 61 YPLQIWFHIR QQCLFKWNKL WGFNDSIKK- AGS-3 (120017 120443) SCR (e 0.686) Exon 1 120017 120443 ( 427 n); score: 0.686 PGS (120017 120443) SGN-U326156+ 3-phase translation of AGS-3 (+strand): . . . . . . 120017 TGTTCAAAATCAAATCGAAATTGATAATTCGAATGGAAAAAAAAGTTATTGATTTATCAG C S K S N R N - - F E W K K K L L I Y Q V Q N Q I E I D N S N G K K S Y - F I S F K I K S K L I I R M E K K V I D L S . . . . . . 120077 TTTTGGGTTATTGGTTTAGCGATTTAGATAAGGGTCTGAATTTTTTTGTTATCGGTTATC F W V I G L A I - I R V - I F L L S V I F G L L V - R F R - G S E F F C Y R L S V L G Y W F S D L D K G L N F F V I G Y . . . . . . 120137 AGTTCTAACAATTTGAAGTTTTTTCTCAACGATTTAACTGATAACCCGATAGTAAATTAA S S N N L K F F L N D L T D N P I V N - V L T I - S F F S T I - L I T R - - I K Q F - Q F E V F S Q R F N - - P D S K L . . . . . . 120197 ATAATTATATTTATACCATTTTATGTATAAAGTCCTTGACTCAAAGTTTGCTTTCCTACT I I I F I P F Y V - S P - L K V C F P T - L Y L Y H F M Y K V L D S K F A F L L N N Y I Y T I L C I K S L T Q S L L S Y . . . . . . 120257 TTTATTTTTGGTTATTCAATGTATCTATCTGCTTTTGAGTAAGATGTAACTTGTGAACTG F I F G Y S M Y L S A F E - D V T C E L L F L V I Q C I Y L L L S K M - L V N - F Y F W L F N V S I C F - V R C N L - T . . . . . . 120317 ATATGCATAGTTTATTTGGTTTGTCATCTTGTTTCTAAGTGATTTTTAATATATATTTTT I C I V Y L V C H L V S K - F L I Y I F Y A - F I W F V I L F L S D F - Y I F F D M H S L F G L S S C F - V I F N I Y F . . . . . . 120377 TGTGTCAAGTCTTAACCGGTAAAATTGATAACCAAATCGATAGCGATAAAAAATCGATAA C V K S - P V K L I T K S I A I K N R - V S S L N R - N - - P N R - R - K I D K L C Q V L T G K I D N Q I D S D K K S I . 120437 GCCAATA A N P I S Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 120443 TATTGGCTTATCGATTTTTTATCGCTATCGATTTGGTTATCAATTTTACCGGTTAAGACT Y W L I D F L S L S I W L S I L P V K T I G L S I F Y R Y R F G Y Q F Y R L R L L A Y R F F I A I D L V I N F T G - D . . . . . . 120383 TGACACAAAAAATATATATTAAAAATCACTTAGAAACAAGATGACAAACCAAATAAACTA - H K K Y I L K I T - K Q D D K P N K L D T K N I Y - K S L R N K M T N Q I N Y L T Q K I Y I K N H L E T R - Q T K - T . . . . . . 120323 TGCATATCAGTTCACAAGTTACATCTTACTCAAAAGCAGATAGATACATTGAATAACCAA C I S V H K L H L T Q K Q I D T L N N Q A Y Q F T S Y I L L K S R - I H - I T K M H I S S Q V T S Y S K A D R Y I E - P . . . . . . 120263 AAATAAAAGTAGGAAAGCAAACTTTGAGTCAAGGACTTTATACATAAAATGGTATAAATA K - K - E S K L - V K D F I H K M V - I N K S R K A N F E S R T L Y I K W Y K Y K I K V G K Q T L S Q G L Y T - N G I N . . . . . . 120203 TAATTATTTAATTTACTATCGGGTTATCAGTTAAATCGTTGAGAAAAAACTTCAAATTGT - L F N L L S G Y Q L N R - E K T S N C N Y L I Y Y R V I S - I V E K K L Q I V I I I - F T I G L S V K S L R K N F K L . . . . . . 120143 TAGAACTGATAACCGATAACAAAAAAATTCAGACCCTTATCTAAATCGCTAAACCAATAA - N - - P I T K K F R P L S K S L N Q - R T D N R - Q K N S D P Y L N R - T N N L E L I T D N K K I Q T L I - I A K P I . . . . . . 120083 CCCAAAACTGATAAATCAATAACTTTTTTTTCCATTCGAATTATCAATTTCGATTTGATT P K T D K S I T F F S I R I I N F D L I P K L I N Q - L F F P F E L S I S I - F T Q N - - I N N F F F H S N Y Q F R F D . 120023 TTGAACA L N - T F E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (+ strand): 129576 130223 AGS-1 (129576 130223) SCR (e 0.923) Exon 1 129576 130223 ( 648 n); score: 0.923 PGS (129576 130223) SGN-U342776+ 3-phase translation of AGS-1 (+strand): . . . . . . 129576 CTTTTTTTCCCCACACACACTGAAGACAACTTTCCAGTAATGGCGGCACATGAAGAACAA L F F P T H T E D N F P V M A A H E E Q F F S P H T L K T T F Q - W R H M K N N F F P H T H - R Q L S S N G G T - R T . . . . . . 129636 CAACACCATCATCAACAACAAGAACAAGAAGACCCCATTTCCTCTTTATCCTTAAAACCC Q H H H Q Q Q E Q E D P I S S L S L K P N T I I N N K N K K T P F P L Y P - N P T T P S S T T R T R R P H F L F I L K T . . . . . . 129696 AACGATAAACACTTGGAGAAGATTTTCTCCTCATATTTGGGTCTAAGTTTCGCTGTCTTT N D K H L E K I F S S Y L G L S F A V F T I N T W R R F S P H I W V - V S L S F Q R - T L G E D F L L I F G S K F R C L . . . . . . 129756 CTTGGGTCTTTACCAAGAAATGCAGTTTCTTTGGTTGGGAGACTTCAGAACCGTAACAAG L G S L P R N A V S L V G R L Q N R N K L G L Y Q E M Q F L W L G D F R T V T R S W V F T K K C S F F G W E T S E P - Q . . . . . . 129816 GAGCTAACTTTTCAGCTTATTGACACAGAGGAGCAGTTAAAGCAGCTACTTTTCAGGAGA E L T F Q L I D T E E Q L K Q L L F R R S - L F S L L T Q R S S - S S Y F S G E G A N F S A Y - H R G A V K A A T F Q E . . . . . . 129876 AAAGAGGATTCAAAGGCAAATGCAAGAGTTGTGGAAATCTTTGCAAGTCATAGACATGCC K E D S K A N A R V V E I F A S H R H A K R I Q R Q M Q E L W K S L Q V I D M P K R G F K G K C K S C G N L C K S - T C . . . . . . 129936 TGGCAGCAAGAAGAGAAGAGGTTGTTACAGCAGATCGACGAGTGTGATGAAGAAATTGCT W Q Q E E K R L L Q Q I D E C D E E I A G S K K R R G C Y S R S T S V M K K L L L A A R R E E V V T A D R R V - - R N C . . . . . . 129996 GAGTTAAGAGGGAGAGCTGAGCAGTTTGAGACGATGGAAAGTGAGTTGAGGGCTAATATT E L R G R A E Q F E T M E S E L R A N I S - E G E L S S L R R W K V S - G L I L - V K R E S - A V - D D G K - V E G - Y . . . . . . 130056 GAGGACTTGAAAAGGGAGATTAGTGAAAGAGATGAAATGTTGAACTTTATGAGTAGAAGG E D L K R E I S E R D E M L N F M S R R R T - K G R L V K E M K C - T L - V E G - G L E K G D - - K R - N V E L Y E - K . . . . . . 130116 GGTTGTGAGATGGAGAATAGTACTAGTGGAGATGGTGGGAGTGATGGTATTGGAGATTGT G C E M E N S T S G D G G S D G I G D C V V R W R I V L V E M V G V M V L E I V G L - D G E - Y - W R W W E - W Y W R L . . . . . 130176 TATGCTGAAATGGGTTTGAGGTTTGGGAAAGTTGGGATATCTGAAGGG Y A E M G L R F G K V G I S E G M L K W V - G L G K L G Y L K L C - N G F E V W E S W D I - R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1+_PGL-17_AGS-1_PPS_1 (129576 130223) (frame '1'; 648 bp, 216 residues) 1 LFFPTHTEDN FPVMAAHEEQ QHHHQQQEQE DPISSLSLKP NDKHLEKIFS SYLGLSFAVF 61 LGSLPRNAVS LVGRLQNRNK ELTFQLIDTE EQLKQLLFRR KEDSKANARV VEIFASHRHA 121 WQQEEKRLLQ QIDECDEEIA ELRGRAEQFE TMESELRANI EDLKREISER DEMLNFMSRR 181 GCEMENSTSG DGGSDGIGDC YAEMGLRFGK VGISEG 3-phase translation of AGS-1 (-strand): . . . . . . 130223 CCCTTCAGATATCCCAACTTTCCCAAACCTCAAACCCATTTCAGCATAACAATCTCCAAT P F R Y P N F P K P Q T H F S I T I S N P S D I P T F P N L K P I S A - Q S P I L Q I S Q L S Q T S N P F Q H N N L Q . . . . . . 130163 ACCATCACTCCCACCATCTCCACTAGTACTATTCTCCATCTCACAACCCCTTCTACTCAT T I T P T I S T S T I L H L T T P S T H P S L P P S P L V L F S I S Q P L L L I Y H H S H H L H - Y Y S P S H N P F Y S . . . . . . 130103 AAAGTTCAACATTTCATCTCTTTCACTAATCTCCCTTTTCAAGTCCTCAATATTAGCCCT K V Q H F I S F T N L P F Q V L N I S P K F N I S S L S L I S L F K S S I L A L - S S T F H L F H - S P F S S P Q Y - P . . . . . . 130043 CAACTCACTTTCCATCGTCTCAAACTGCTCAGCTCTCCCTCTTAACTCAGCAATTTCTTC Q L T F H R L K L L S S P S - L S N F F N S L S I V S N C S A L P L N S A I S S S T H F P S S Q T A Q L S L L T Q Q F L . . . . . . 129983 ATCACACTCGTCGATCTGCTGTAACAACCTCTTCTCTTCTTGCTGCCAGGCATGTCTATG I T L V D L L - Q P L L F L L P G M S M S H S S I C C N N L F S S C C Q A C L - H H T R R S A V T T S S L L A A R H V Y . . . . . . 129923 ACTTGCAAAGATTTCCACAACTCTTGCATTTGCCTTTGAATCCTCTTTTCTCCTGAAAAG T C K D F H N S C I C L - I L F S P E K L A K I S T T L A F A F E S S F L L K S D L Q R F P Q L L H L P L N P L F S - K . . . . . . 129863 TAGCTGCTTTAACTGCTCCTCTGTGTCAATAAGCTGAAAAGTTAGCTCCTTGTTACGGTT - L L - L L L C V N K L K S - L L V T V S C F N C S S V S I S - K V S S L L R F V A A L T A P L C Q - A E K L A P C Y G . . . . . . 129803 CTGAAGTCTCCCAACCAAAGAAACTGCATTTCTTGGTAAAGACCCAAGAAAGACAGCGAA L K S P N Q R N C I S W - R P K K D S E - S L P T K E T A F L G K D P R K T A K S E V S Q P K K L H F L V K T Q E R Q R . . . . . . 129743 ACTTAGACCCAAATATGAGGAGAAAATCTTCTCCAAGTGTTTATCGTTGGGTTTTAAGGA T - T Q I - G E N L L Q V F I V G F - G L R P K Y E E K I F S K C L S L G F K D N L D P N M R R K S S P S V Y R W V L R . . . . . . 129683 TAAAGAGGAAATGGGGTCTTCTTGTTCTTGTTGTTGATGATGGTGTTGTTGTTCTTCATG - R G N G V F L F L L L M M V L L F F M K E E M G S S C S C C - - W C C C S S C I K R K W G L L V L V V D D G V V V L H . . . . . 129623 TGCCGCCATTACTGGAAAGTTGTCTTCAGTGTGTGTGGGGAAAAAAAG C R H Y W K V V F S V C G E K K A A I T G K L S S V C V G K K V P P L L E S C L Q C V W G K K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0082C24.1-_PGL-17_AGS-1_PPS_1 (129831 129577) (frame '0'; 255 bp, 85 residues) 1 AEKLAPCYGS EVSQPKKLHF LVKTQERQRN LDPNMRRKSS PSVYRWVLRI KRKWGLLVLV 61 VDDGVVVLHV PPLLESCLQC VWGKK >C08SLe0082C24.1-_PGL-17_AGS-1_PPS_2 (130174 129923) (frame '2'; 249 bp, 83 residues) 1 QSPIPSLPPS PLVLFSISQP LLLIKFNISS LSLISLFKSS ILALNSLSIV SNCSALPLNS 61 AISSSHSSIC CNNLFSSCCQ ACL- ... finished at: Mon Aug 21 22:00:26 2006