GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 21 21:37:52 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-64ena/C08SLm0006K11/C08SLm0006K11.seq.screen ________________________________________________________________________________ Sequence 1: C08SLm0006K11.1, from 1 to 129852, both strands analyzed. ... started at: Mon Aug 21 22:03:12 2006 EST library file: /tmp/cxgn-bacpublish-resources-TUnTDC/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 86 EST library file: /tmp/cxgn-bacpublish-resources-TUnTDC/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 56 ******************************************************************************** EST sequence 26 +strand 577 n (File: SGN-E328609+) 1 TTAGTGTATT CTACGTTGAT TACGAAGGAA GAAGCTATGG CTGCCTGTTC GAGGCGAGGC 61 AATTCTCTCG TCGTGCTAGC GATCGTTTTA TTAGGCTGTC TTTCTGCACT TTCCAATGCA 121 AAGGAGGAGG CTACAAAACT TGGTACCGTT ATAGGAATTG ATCTTGGGAC AACCTATTCC 181 TGTGTTGGGG TGTACAAGAA TGGTCATGTG GAGATTATAG CTAATGACCA AGGAAACAGG 241 ATTACACCAT CATGGGTTGC ATTCACTGAT AACGAGAGAT TGATTGGTGA GGCTGCCAAG 301 AACCTGGCTG CGGTCAACCC AGAAAGAACA ATCTTTGATG TTAAGAGGCT GATTGGAAGA 361 AAATTTGAAG ATAAGGAAGT ACAGAGGGAT ATGAAGCTGG TACCGTACAA GATTGTCAGC 421 AAGGATGGAA AGCCCTACAT ACAAGTCAAA ATCAAGGATG GAGAAGTTAA GGTATTTAGT 481 CCTGAGGAAA TCAGCGCCAT GATTTTGACA AAGATGAAAG AGACAGCCGA AGCATTCCTT 541 GGGAAGACTA TTTAGGATGC TGTGGTCACT GTTCCTG Predicted gene structure (within gDNA segment 1 to 2219): Exon 1 992 1002 ( 11 n); cDNA 85 95 ( 11 n); score: 0.727 Intron 1 1003 1036 ( 34 n); Pd: 0.587 (s: 0), Pa: 0.983 (s: 0.98) Exon 2 1037 1304 ( 268 n); cDNA 96 362 ( 267 n); score: 0.996 Intron 2 1305 1394 ( 90 n); Pd: 0.945 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 1395 1609 ( 215 n); cDNA 363 577 ( 215 n); score: 0.995 MATCH C08SLm0006K11.1+ SGN-E328609+ 0.996 494 0.856 C PGS_C08SLm0006K11.1+_SGN-E328609+ (992 1002,1037 1304,1395 1609) Alignment (genomic DNA sequence = upper lines): GTCTGATGAG GGTCATCTGT TATCTTACTC TTTTCCTTGA AACAGGCTGT CTTTCTGCAC 1051 || | || || | |||| |||||||||| GTTTTATTAG G......... .......... .......... .....-CTGT CTTTCTGCAC 109 TTTCCAATGC AAAGGAGGAG GCTACAAAAC TTGGTACCGT TATAGGAATT GATCTTGGGA 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAATGC AAAGGAGGAG GCTACAAAAC TTGGTACCGT TATAGGAATT GATCTTGGGA 169 CAACCTATTC CTGTGTTGGG GTGTACAAGA ATGGTCATGT GGAGATTATA GCTAATGACC 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTATTC CTGTGTTGGG GTGTACAAGA ATGGTCATGT GGAGATTATA GCTAATGACC 229 AAGGAAACAG GATTACACCA TCATGGGTTG CATTCACTGA TAACGAGAGA TTGATTGGTG 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAACAG GATTACACCA TCATGGGTTG CATTCACTGA TAACGAGAGA TTGATTGGTG 289 AGGCTGCCAA GAACCTGGCT GCGGTCAACC CAGAAAGAAC AATCTTTGAT GTTAAGAGGC 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGCCAA GAACCTGGCT GCGGTCAACC CAGAAAGAAC AATCTTTGAT GTTAAGAGGC 349 TGATTGGAAG AAAGTAATGG ACAATTCTCA ATTAGTTTCA CATGTTTTGT TATGATTGTA 1351 |||||||||| ||| TGATTGGAAG AAA....... .......... .......... .......... .......... 362 TATCTGTCAT GCTAAGAGAT GCTTTATCTT CTTTTTTTTT CAGATTTGAA GATAAGGAAG 1411 ||||||| |||||||||| .......... .......... .......... .......... ...ATTTGAA GATAAGGAAG 379 TACAGAGGGA TATGAAGCTG GTACCGTACA AGATTGTCAG CAAGGATGGA AAGCCCTACA 1471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAGGGA TATGAAGCTG GTACCGTACA AGATTGTCAG CAAGGATGGA AAGCCCTACA 439 TACAAGTCAA AATCAAGGAT GGAGAAGTTA AGGTATTTAG TCCTGAGGAA ATCAGCGCCA 1531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGTCAA AATCAAGGAT GGAGAAGTTA AGGTATTTAG TCCTGAGGAA ATCAGCGCCA 499 TGATTTTGAC AAAGATGAAA GAGACAGCCG AAGCATTCCT TGGGAAGACT ATTAAGGATG 1591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TGATTTTGAC AAAGATGAAA GAGACAGCCG AAGCATTCCT TGGGAAGACT ATTTAGGATG 559 CTGTGGTCAC TGTTCCTG 1609 |||||||||| |||||||| CTGTGGTCAC TGTTCCTG 577 hqPGS_C08SLm0006K11.1+_SGN-E328609+ (992 1002,1037 1304,1395 1609) ******************************************************************************** EST sequence 1 +strand 595 n (File: SGN-E577904+) 1 AACTTTAAGC AGAATATCGC ATTTGAACGC TAACACAATT GCCTCTCCTT TTGCTGTGTT 61 ATGTCATGAA TTTCATATTG TACTTCCAGA GTCTGATGAG GGTCATCTTT TTTTTAAGAA 121 TGAACCAACA GATATCGTAA ACGATGTCAC GACCATGAAT ACAACAAAAT GACAAGCAAC 181 GAAAGAGAAT ACATACATCA TAAAGTTTCA GAAAGATTAC AGATAATCCA CATTCAAGGT 241 GTAACCCAGA CATACATTCA TTAACCAGTA CTCTTTAACA TCAAGACTAG TCCACATCAA 301 ACTTATAGAT CCTTACAAAA GCAGTTTCCA TAGCTGAGGA CGAAACCCAC TTATCTATAA 361 CCACGAGGGT AGTTCCTTTC ATAAGGAGAA TATGACCGGG ATCGCGCACG TCTCGACCTT 421 CCAGCATAAG GTGAGCGTCT AGGAGAATAA TCTCGCCCAC CTCTATATGG AGAGTGTCTG 481 GGAGAATAAT CTCGCCCACC TCTATATGGA GAACGTCTTG GAGATCTTCG GTACCCATAG 541 TCACCACGGT CACGATACCT ACCCCGATCA CCATGATAAC CATCACCCCT TGCGC Predicted gene structure (within gDNA segment 1 to 6489): Exon 1 947 1009 ( 63 n); cDNA 46 108 ( 63 n); score: 1.000 Intron 1 1010 3075 (2066 n); Pd: 0.000 (s: 1.00), Pa: 0.994 (s: 0) Exon 2 3076 3085 ( 10 n); cDNA 109 118 ( 10 n); score: 0.800 Intron 2 3086 5729 (2644 n); Pd: 0.000 (s: 0), Pa: 0.975 (s: 0) Exon 3 5730 5752 ( 23 n); cDNA 119 142 ( 24 n); score: 0.630 MATCH C08SLm0006K11.1+ SGN-E577904+ 1.000 96 0.161 C PGS_C08SLm0006K11.1+_SGN-E577904+ (947 1009,3076 3085,5730 5752) Alignment (genomic DNA sequence = upper lines): TCCTTTTGCT GTGTTATGTC ATGAATTTCA TATTGTACTT CCAGAGTCTG ATGAGGGTCA 1006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTGCT GTGTTATGTC ATGAATTTCA TATTGTACTT CCAGAGTCTG ATGAGGGTCA 105 TCTGTTATCT TACTCTTTTC CTTGAAACAG GCTGTCTTTC TGCACTTTCC AATGCAAAGG 1066 ||| TCT....... .......... .......... .......... .......... .......... 108 AGGAGGCTAC AAAACTTGGT ACCGTTATAG GAATTGATCT TGGGACAACC TATTCCTGTG 1126 .......... .......... .......... .......... .......... .......... 108 TTGGGGTGTA CAAGAATGGT CATGTGGAGA TTATAGCTAA TGACCAAGGA AACAGGATTA 1186 .......... .......... .......... .......... .......... .......... 108 CACCATCATG GGTTGCATTC ACTGATAACG AGAGATTGAT TGGTGAGGCT GCCAAGAACC 1246 .......... .......... .......... .......... .......... .......... 108 TGGCTGCGGT CAACCCAGAA AGAACAATCT TTGATGTTAA GAGGCTGATT GGAAGAAAGT 1306 .......... .......... .......... .......... .......... .......... 108 AATGGACAAT TCTCAATTAG TTTCACATGT TTTGTTATGA TTGTATATCT GTCATGCTAA 1366 .......... .......... .......... .......... .......... .......... 108 GAGATGCTTT ATCTTCTTTT TTTTTCAGAT TTGAAGATAA GGAAGTACAG AGGGATATGA 1426 .......... .......... .......... .......... .......... .......... 108 AGCTGGTACC GTACAAGATT GTCAGCAAGG ATGGAAAGCC CTACATACAA GTCAAAATCA 1486 .......... .......... .......... .......... .......... .......... 108 AGGATGGAGA AGTTAAGGTA TTTAGTCCTG AGGAAATCAG CGCCATGATT TTGACAAAGA 1546 .......... .......... .......... .......... .......... .......... 108 TGAAAGAGAC AGCCGAAGCA TTCCTTGGGA AGACTATTAA GGATGCTGTG GTCACTGTTC 1606 .......... .......... .......... .......... .......... .......... 108 CTGGTATGTT GTTATCAGGT CCCAAATGTT CAATTTTTTT GTTTTCATTT TTCTTTTCTG 1666 .......... .......... .......... .......... .......... .......... 108 TCATTATTTA GAGACTTGTC TCGTCTCTGC AGCATATTTC AATGATGCAC AAAGACAGGC 1726 .......... .......... .......... .......... .......... .......... 108 GACAAAGGAT GCTGGTGTTA TTGCTGGATT AAATGTTGCT AGGATCATTA ATGAGCCAAC 1786 .......... .......... .......... .......... .......... .......... 108 AGCTGCAGCC ATTGCCTACG GACTGGATAA GAAAGGTGGT GAGAAGAACA TTCTTGTCTT 1846 .......... .......... .......... .......... .......... .......... 108 TGACCTTGGT GGTGGGACAT TCGATGTCAG TATTCTGACC ATTGACAATG GTGTATTTGA 1906 .......... .......... .......... .......... .......... .......... 108 GGTTCTTGCA ACAAATGGTG ACACCCATCT TGGAGGTAAG GATCTATGGT ATAGAAACAA 1966 .......... .......... .......... .......... .......... .......... 108 CTTAAAGTTG AGCATGACAC ATTTTGATAC TGCTAACCAT AATGCTGTTA GGGTGTCCTG 2026 .......... .......... .......... .......... .......... .......... 108 ATTGTATTTT CTAATGGACT TCTCCTCAAC TTGATATCAA CTAATGAAAT GCTAAAACAC 2086 .......... .......... .......... .......... .......... .......... 108 TTTTCTATTG ATTGCACATT AGTGGGGTTG CTCTTTTGGG AGGGTATTTT ATGATAGCTG 2146 .......... .......... .......... .......... .......... .......... 108 AGGAAGATTC AGATGCCATC CTATGAGATA GTTATTCTTA GATTATATTT TGAATATCCG 2206 .......... .......... .......... .......... .......... .......... 108 ATACATCTTG CAGGTGAGGA CTTTGATCAA AGGATTATGG AATACTTCAT CAAGTTGATC 2266 .......... .......... .......... .......... .......... .......... 108 AAGAAGAAGC ATGGAAAGGA CATCAGCAAG GACAACAGAG CTCTTGGAAA GCTAAGGAGA 2326 .......... .......... .......... .......... .......... .......... 108 GAAGCTGAGC GTGCCAAGAG ATCCCTTAGT AGCCAGCACC AAGTCCGGGT TGAGATTGAA 2386 .......... .......... .......... .......... .......... .......... 108 TCATTATTTG ATGGTACTGA TTTCTCTGAA CCACTGACCC GTGCTCGCTT TGAGGAGTTG 2446 .......... .......... .......... .......... .......... .......... 108 AACAATGATC TCTTCAGAAA GACAATGGGA CCTGTGAAGA AGGCAATGGA TGATGCTGGC 2506 .......... .......... .......... .......... .......... .......... 108 CTACAAAAGA ACCAGATTGA TGAGATTGTT CTTGTTGGTG GAAGCACCAG AATTCCTAAG 2566 .......... .......... .......... .......... .......... .......... 108 GTGCAACAGC TCCTCAAAGA CTATTTTGAC GGGAAGGAGC CCAGCAAGGG TGTAAATCCT 2626 .......... .......... .......... .......... .......... .......... 108 GATGAAGCAG TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA 2686 .......... .......... .......... .......... .......... .......... 108 GATGAAACTA AAGGTACATG ATCTAATTAG TTTTCTTGCC ATAATTTGCT TATTGGTTTT 2746 .......... .......... .......... .......... .......... .......... 108 GATAACGTGT GAGTTTGCAG CTTTTGGTGA ATGATTGTGA CATGTTTCTT GTATGCAGAT 2806 .......... .......... .......... .......... .......... .......... 108 ATCCTTCTCC TGGATGTCGC TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG 2866 .......... .......... .......... .......... .......... .......... 108 ACCAAATTGA TCCCCAGAAA TACCGTTATC CCAACCAAGA AGTCCCAGGT CTTCACCACT 2926 .......... .......... .......... .......... .......... .......... 108 TACCAAGACC AGCAGACCAC TGTCTCCATT CAGGTATTGC TTTGCTTCAT ATTTGTGCAA 2986 .......... .......... .......... .......... .......... .......... 108 TCCTACAGCT CATTATCCAG AAATGTTCAT TAACCTGTCC TCTGGTATGC TCCGATTCTC 3046 .......... .......... .......... .......... .......... .......... 108 ACTGTTTTTT CTCCACATGT TGATTACAGG TTTTTGAAGG TGAAAGGAGT CTTACCAAGG 3106 ||||| ||| .......... .......... .........T TTTTTTAAG. .......... .......... 118 ACTGTAGGAA TCTCGGGAAG TTTGATCTTA CAGGAATTCC TCCAGCTCCA AGGTCAGTTA 3166 .......... .......... .......... .......... .......... .......... 118 CATTTCTTCT CTTTAGATAA TTGTACAAAC AACTTTTTGG GATCTGAATT GGAAACTTGA 3226 .......... .......... .......... .......... .......... .......... 118 TATTGTTTGA ACAGGGGAAC CCCCCAAATT GAGGTCACAT TCGAAGTTGA TGCCAATGGT 3286 .......... .......... .......... .......... .......... .......... 118 ATCTTGAATG TCAAAGCAGA AGACAAGGGT ACTGGAAAAG CAGAGAAGAT TACCATTACA 3346 .......... .......... .......... .......... .......... .......... 118 AACGACAAGG GCCGCTTAAG CCAAGAAGAG ATTGAGCGTA TGGTTCGTGA AGCAGAAGAG 3406 .......... .......... .......... .......... .......... .......... 118 TTTGCTGAGG AAGACAAGAA AGTGAAGGAG AAGATTGATG CCCGTAACGC TTTGGAAACC 3466 .......... .......... .......... .......... .......... .......... 118 TACGTGTACA ACATGAAGAA TCAAATCAAC GACAAGGACA AATTAGCTGA CAAACTCGAG 3526 .......... .......... .......... .......... .......... .......... 118 TCTGATGAGA AGGAGAAGAT TGAGACAGCA ACGAAAGAAG CCCTTGAATG GTTAGACGAT 3586 .......... .......... .......... .......... .......... .......... 118 AACCAGAGCG CCGAGAAAGA GGACTATGAC GAGAAGCTCA AAGAGGTCGA GGCAGTTTGC 3646 .......... .......... .......... .......... .......... .......... 118 AACCCAATCA TCACAGCTGT TTATCAACGA TCAGGTGGAG CCCCAGGTGG CGGTGCATCG 3706 .......... .......... .......... .......... .......... .......... 118 GAAGAAGAAG ATGACAGCCA TGATGAGCTG TAAGCTGTTC CAAAGAATCT CCATTGATAC 3766 .......... .......... .......... .......... .......... .......... 118 TGCAAAGATG CAGGAAATGA GGATATATAG AGTAGTTTGA AGTGAGGGTT AGTGCAAGTT 3826 .......... .......... .......... .......... .......... .......... 118 TTGTCATTCG TTCTGAAAAA TCTCTCCCCC CTTCGCTTAG TTTTTTTTAG GTGAAGATTT 3886 .......... .......... .......... .......... .......... .......... 118 TACTAAAGGA TGTTTCCGTT CTTTGAGAAC GACGGCTTGT ATGTTGCTTC GATCTGTTGA 3946 .......... .......... .......... .......... .......... .......... 118 ATACAACTTC AGAATTTTAT TTAGTTCATC TTTTGAGCAT CATAATCTGA CTCCTATTTC 4006 .......... .......... .......... .......... .......... .......... 118 GACCCAGTTA TTACATTGGA CATGTTCTCT TGCTGACAAG TGCCAATACT TTGGATGACT 4066 .......... .......... .......... .......... .......... .......... 118 TGTACCTAAG AATACAATGA TACAACACAA ATGAAATAAG ACAAATAATA CCGCATATAG 4126 .......... .......... .......... .......... .......... .......... 118 TAGAAAGAGA AAAAGGAGGA GGTTAGCCTC CTAATCTTAT TGTTAAAAAT AAGGATATAA 4186 .......... .......... .......... .......... .......... .......... 118 AGTAGTAACG AATTCCGAAA CCTTGTTAAT AAAGTTAGCC TTAAGTTTGG TCGGAGTTGA 4246 .......... .......... .......... .......... .......... .......... 118 ATTATTTCGA TATAACCTTA TGGTTTATTT AGTTAATAAA ATTACTTATG GTCGGGATAA 4306 .......... .......... .......... .......... .......... .......... 118 ATTATGCTCC CTAACAATTG CGATTTTTTT AATCCTATTT CGAAGTTAGA ATCAAATATC 4366 .......... .......... .......... .......... .......... .......... 118 GGTGATTTTG ATCTAAATAA ATGATCCCTA AGTTCTCATC ATAGTCCGGC AAACTTCCTT 4426 .......... .......... .......... .......... .......... .......... 118 GCGAGGAGGC AAATGCTCCT ATTGGAGCTT CTCACCTTTT TACCCTCGAG ATTTCGATAT 4486 .......... .......... .......... .......... .......... .......... 118 AACTTAAGAA GAATGATAGA TTTGATCTCA AAATATAAAA TTTTTTGTTT ATACAACAGA 4546 .......... .......... .......... .......... .......... .......... 118 TCACAAATGA TGGGGTTTTC ATTATTGAAA AATATTGAAC TGATTTTTCT TAAATAAGAG 4606 .......... .......... .......... .......... .......... .......... 118 TAAATTCGAC GTACGTAAAT TAGACTCAAT AGTTCAGAAA ACATTTGGAA ATCCTGTATC 4666 .......... .......... .......... .......... .......... .......... 118 TCCTTATCAG CTGTATTATG AGCTAAACTG TGTCAAGTTA GAATTAGAAG CCAGCTCTTG 4726 .......... .......... .......... .......... .......... .......... 118 GATCACCCGA GCCTGCTGCC ACAACACCCA TCCCACCATC AGCTGTAACG TTCACATTTT 4786 .......... .......... .......... .......... .......... .......... 118 CCCCATCAGT CGATTTTGTA AGAGCAATTT TATCACCATC AAGCTCGTTT ACAAGTTCAT 4846 .......... .......... .......... .......... .......... .......... 118 CAATCTTGCG AAACTGGTAA GGCCATCGGA CATTGTACAG GAACTGGCGC AGATCAAACC 4906 .......... .......... .......... .......... .......... .......... 118 TATTGTCCTC GGGTGAATAA CTCTGCAATA CAAAAAAAGT CATATGCTTG TCTGATGAAA 4966 .......... .......... .......... .......... .......... .......... 118 CATCCAAAGA TCATATAGCA GTTTTATTTT CATTTTACTC TGTGTAATGA CGGTCTAAGA 5026 .......... .......... .......... .......... .......... .......... 118 TGCGATATAG TAAGTGAAAA CTCGTATGGG CGAATTTGAC TTGGTTGGGA TTGAGATGTG 5086 .......... .......... .......... .......... .......... .......... 118 GATGATGATG AGGCTCCTCT GACGAAACAA ACCTAACAAA AGCATTAAAA TGGTTTTAAG 5146 .......... .......... .......... .......... .......... .......... 118 CCTCAAGTTG CATGGATATA TAAGTATTTC CATAAGAGCA TTTGCAGACT TTCTGCATAT 5206 .......... .......... .......... .......... .......... .......... 118 GTTTGAGGTA TCCATGAAGT GCCTAAAAGC CATCTCATGA GGCGAGGATT GTCCACGGCC 5266 .......... .......... .......... .......... .......... .......... 118 ATATAAAAGG CCATACCCAA TCTGTAAACT TTAATTCTTT TTCCCCCTCT TTTTTCTTTT 5326 .......... .......... .......... .......... .......... .......... 118 TTTCTCACTC TCTTATGAAC CGCAAAGAGA AAAGCTTGCG ATTCTGGTCT GACTTGAGCT 5386 .......... .......... .......... .......... .......... .......... 118 CTAACATTCA AAGCGGTGAC TTGCTAGTAA CCTTATTCAA TGCCCTATGT GGGACTACTC 5446 .......... .......... .......... .......... .......... .......... 118 TAACATTACC AGACAGATAT CTCAATGCAA GTAATGGATC CATGCAACAT AGAAGTGAAG 5506 .......... .......... .......... .......... .......... .......... 118 TACCTCAGCA TGATATGAAG GTGTCATGAC AGTCATCTTG TGTCTATTGA TGGAATAGTA 5566 .......... .......... .......... .......... .......... .......... 118 TTTAAAGAAG TATTTCACTT TGTCAGCCAC CTCTGCAGGC GTCAACTTTG TTCCCCATTT 5626 .......... .......... .......... .......... .......... .......... 118 GTAACACAAA TTCTGCAATA TGATCATTCA GTACTTGTCA AGGACTACAA AAATATGTGG 5686 .......... .......... .......... .......... .......... .......... 118 AAGAAATGAC CTATAACAAG TCTGATTCTA TAATGTCTTA CAGAATGAA- CAGGACAAAC 5745 |||||| || | | | .......... .......... .......... .......... ...AATGAAC CAACAGATAT 135 CTTAAAC 5752 | ||||| CGTAAAC 142 hqPGS_C08SLm0006K11.1+_SGN-E577904+ (947 1009) ******************************************************************************** EST sequence 32 +strand 458 n (File: SGN-E310011+) 1 CATTGCCTAC GGACTGGATA AGAAAGGTGG TGAGAAGAAC ATTCTTGTCT TTGACCTTGG 61 TGGTGGGACA TTCGATGTCA GTATTCTGAC CATTGACAAT GGTGTATTTG AGGTTCTTGC 121 AACAAATGGT GACACCCATC TTGGAGGTGA GGACTTTGAT CAAAGGATTA TGGAATACTT 181 CATCAAGTTG ATCAAGAAGA AGCATGGAAA GGACATCAGC AAGGACAACA GAGCTCTTGG 241 AAAGCTAAGG AGAGAAGCTG AGCGTGCCAA GAGATCCCTT AGTAGCCAGC ACCAAGTCCG 301 GGTTGAGATT GAATCATTAT TTGATGGTAC TGATTTCTCT GAACCACTGA CCCGTGCTCG 361 CTTTGAGGAG TTGAACAATG ATCTCTTCAG AAAGACAATG GGACCTGTGA AGAACGCAAT 421 GGATGATGCT GGCCTACAAA AGAACCAGAT TGATGAGA Predicted gene structure (within gDNA segment 1196 to 3141): Exon 1 1796 1941 ( 146 n); cDNA 1 146 ( 146 n); score: 1.000 Intron 1 1942 2219 ( 278 n); Pd: 0.988 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 2220 2531 ( 312 n); cDNA 147 458 ( 312 n); score: 0.997 MATCH C08SLm0006K11.1+ SGN-E310011+ 0.998 458 1.000 C PGS_C08SLm0006K11.1+_SGN-E310011+ (1796 1941,2220 2531) Alignment (genomic DNA sequence = upper lines): CATTGCCTAC GGACTGGATA AGAAAGGTGG TGAGAAGAAC ATTCTTGTCT TTGACCTTGG 1855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCCTAC GGACTGGATA AGAAAGGTGG TGAGAAGAAC ATTCTTGTCT TTGACCTTGG 60 TGGTGGGACA TTCGATGTCA GTATTCTGAC CATTGACAAT GGTGTATTTG AGGTTCTTGC 1915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGGACA TTCGATGTCA GTATTCTGAC CATTGACAAT GGTGTATTTG AGGTTCTTGC 120 AACAAATGGT GACACCCATC TTGGAGGTAA GGATCTATGG TATAGAAACA ACTTAAAGTT 1975 |||||||||| |||||||||| |||||| AACAAATGGT GACACCCATC TTGGAG.... .......... .......... .......... 146 GAGCATGACA CATTTTGATA CTGCTAACCA TAATGCTGTT AGGGTGTCCT GATTGTATTT 2035 .......... .......... .......... .......... .......... .......... 146 TCTAATGGAC TTCTCCTCAA CTTGATATCA ACTAATGAAA TGCTAAAACA CTTTTCTATT 2095 .......... .......... .......... .......... .......... .......... 146 GATTGCACAT TAGTGGGGTT GCTCTTTTGG GAGGGTATTT TATGATAGCT GAGGAAGATT 2155 .......... .......... .......... .......... .......... .......... 146 CAGATGCCAT CCTATGAGAT AGTTATTCTT AGATTATATT TTGAATATCC GATACATCTT 2215 .......... .......... .......... .......... .......... .......... 146 GCAGGTGAGG ACTTTGATCA AAGGATTATG GAATACTTCA TCAAGTTGAT CAAGAAGAAG 2275 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTGAGG ACTTTGATCA AAGGATTATG GAATACTTCA TCAAGTTGAT CAAGAAGAAG 202 CATGGAAAGG ACATCAGCAA GGACAACAGA GCTCTTGGAA AGCTAAGGAG AGAAGCTGAG 2335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAAAGG ACATCAGCAA GGACAACAGA GCTCTTGGAA AGCTAAGGAG AGAAGCTGAG 262 CGTGCCAAGA GATCCCTTAG TAGCCAGCAC CAAGTCCGGG TTGAGATTGA ATCATTATTT 2395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGCCAAGA GATCCCTTAG TAGCCAGCAC CAAGTCCGGG TTGAGATTGA ATCATTATTT 322 GATGGTACTG ATTTCTCTGA ACCACTGACC CGTGCTCGCT TTGAGGAGTT GAACAATGAT 2455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTACTG ATTTCTCTGA ACCACTGACC CGTGCTCGCT TTGAGGAGTT GAACAATGAT 382 CTCTTCAGAA AGACAATGGG ACCTGTGAAG AAGGCAATGG ATGATGCTGG CCTACAAAAG 2515 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CTCTTCAGAA AGACAATGGG ACCTGTGAAG AACGCAATGG ATGATGCTGG CCTACAAAAG 442 AACCAGATTG ATGAGA 2531 |||||||||| |||||| AACCAGATTG ATGAGA 458 hqPGS_C08SLm0006K11.1+_SGN-E310011+ (1796 1941,2220 2531) ******************************************************************************** EST sequence 36 +strand 517 n (File: SGN-E268352+) 1 GACTTTGATC AAAGGATTAT GGAATACTTC ATCAAGTTGA TCAAGAAGAA GCATGGAAAG 61 GACATCAGCA AGGACAACAG AGCTCTTGGA AAGCTAAGGA GAGAAGCTGA GCGTGCCAAG 121 AGATCCCTTA GTAGCCAGCA CCAAGTCCGG GTTGAGATTG AATCATTATT TGATGGTACT 181 GATTTCTCTG AACCACTGAC CCGTGCTCGC TTTGAGGAGT TGAACAATGA TCTCTTCAGA 241 AAGACAATGG GACCTGTGAA GAAGGCAATG GATGATGCTG GCCTACAAAA GAACCAGATT 301 GATGAGATTG TTCTTGTTGG TGGAAGCACC AGAATTCCTA AGGTGCAACA GCTCCTCAAA 361 GACTATTTTG ACGGGAAGGA GCCCAGCAAG GGTGTAAATC CTGATGAAGC AGTTGCTTAT 421 GGTGCTGCTG TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAGATATC 481 CTTCTCCTGG ATGTCGCTCC TCTCACCCTT GGTATTG Predicted gene structure (within gDNA segment 1625 to 3456): Exon 1 2225 2699 ( 475 n); cDNA 1 475 ( 475 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2846 ( 42 n); cDNA 476 517 ( 42 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E268352+ 1.000 517 1.000 C PGS_C08SLm0006K11.1+_SGN-E268352+ (2225 2699,2805 2846) Alignment (genomic DNA sequence = upper lines): GACTTTGATC AAAGGATTAT GGAATACTTC ATCAAGTTGA TCAAGAAGAA GCATGGAAAG 2284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTTGATC AAAGGATTAT GGAATACTTC ATCAAGTTGA TCAAGAAGAA GCATGGAAAG 60 GACATCAGCA AGGACAACAG AGCTCTTGGA AAGCTAAGGA GAGAAGCTGA GCGTGCCAAG 2344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATCAGCA AGGACAACAG AGCTCTTGGA AAGCTAAGGA GAGAAGCTGA GCGTGCCAAG 120 AGATCCCTTA GTAGCCAGCA CCAAGTCCGG GTTGAGATTG AATCATTATT TGATGGTACT 2404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCCTTA GTAGCCAGCA CCAAGTCCGG GTTGAGATTG AATCATTATT TGATGGTACT 180 GATTTCTCTG AACCACTGAC CCGTGCTCGC TTTGAGGAGT TGAACAATGA TCTCTTCAGA 2464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTCTCTG AACCACTGAC CCGTGCTCGC TTTGAGGAGT TGAACAATGA TCTCTTCAGA 240 AAGACAATGG GACCTGTGAA GAAGGCAATG GATGATGCTG GCCTACAAAA GAACCAGATT 2524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACAATGG GACCTGTGAA GAAGGCAATG GATGATGCTG GCCTACAAAA GAACCAGATT 300 GATGAGATTG TTCTTGTTGG TGGAAGCACC AGAATTCCTA AGGTGCAACA GCTCCTCAAA 2584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGATTG TTCTTGTTGG TGGAAGCACC AGAATTCCTA AGGTGCAACA GCTCCTCAAA 360 GACTATTTTG ACGGGAAGGA GCCCAGCAAG GGTGTAAATC CTGATGAAGC AGTTGCTTAT 2644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTATTTTG ACGGGAAGGA GCCCAGCAAG GGTGTAAATC CTGATGAAGC AGTTGCTTAT 420 GGTGCTGCTG TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAGGTACA 2704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GGTGCTGCTG TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAG..... 475 TGATCTAATT AGTTTTCTTG CCATAATTTG CTTATTGGTT TTGATAACGT GTGAGTTTGC 2764 .......... .......... .......... .......... .......... .......... 475 AGCTTTTGGT GAATGATTGT GACATGTTTC TTGTATGCAG ATATCCTTCT CCTGGATGTC 2824 |||||||||| |||||||||| .......... .......... .......... .......... ATATCCTTCT CCTGGATGTC 495 GCTCCTCTCA CCCTTGGTAT TG 2846 |||||||||| |||||||||| || GCTCCTCTCA CCCTTGGTAT TG 517 hqPGS_C08SLm0006K11.1+_SGN-E268352+ (2225 2699,2805 2846) ******************************************************************************** EST sequence 8 +strand 668 n (File: SGN-E327301+) 1 AGAAGCTGAG CGTGCCAAGA GATCCCTTAG TAGCCAGCAC CAAGTCCGGG TTGAGATTGA 61 ATCATTATTT GATGGTACTG ATTTCTCTGA ACCACTGACC CGTGCTCGCT TTGAGGAGTT 121 GAACAATGAT CTCTTCAGAA AGACAATGGG ACCTGTGAAG AAGGCAATGG ATGATGCTGG 181 CCTACAAAAG AACCAGATTG ATGAGATTGT TCTTGTTGGT GGAAGCACCA GAATTCCTAA 241 GGTGCAACAG CTCCTCAAAG ACTATTTTGA CGGGAAGGAG CCCAGCAAGG GTGTAAATCC 301 TGATGAAGCA GTTGCTTATG GTGCTGCTGT TCAAGGTGGT ATCCTCAGTG GTGAGGGTGG 361 AGATGAAACT AAAGATATCC TTCTCCTGGA TGTCGCTCCT CTCACCCTTG GTATTGAAAC 421 CGTTGGTGGT GTGATGACCA AATTGATCCC CAGAAATACC GTTATCCCAA CCAAGAAGTC 481 CCAGGTCTTC ACCACTTACC AAGACCAGCA GACCACTGTC TCCATTCAGG TTTTTGAAGG 541 TGAAAGGAGT CTTACCAAGG ACTGTAGGAA TCTCGGGAAG TTTGATCTTA CAGGAATTCC 601 TCCAGCTCCA AGGGGAACCC CCCAAATTGA GGTCACATTC GAAGTTGATG CCAATGGTAT 661 CTTGAATG Predicted gene structure (within gDNA segment 1726 to 3906): Exon 1 2326 2699 ( 374 n); cDNA 1 374 ( 374 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2959 ( 155 n); cDNA 375 529 ( 155 n); score: 1.000 Intron 2 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 3076 3158 ( 83 n); cDNA 530 612 ( 83 n); score: 1.000 Intron 3 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 3241 3296 ( 56 n); cDNA 613 668 ( 56 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E327301+ 1.000 668 1.000 C PGS_C08SLm0006K11.1+_SGN-E327301+ (2326 2699,2805 2959,3076 3158,3241 3296) Alignment (genomic DNA sequence = upper lines): AGAAGCTGAG CGTGCCAAGA GATCCCTTAG TAGCCAGCAC CAAGTCCGGG TTGAGATTGA 2385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTGAG CGTGCCAAGA GATCCCTTAG TAGCCAGCAC CAAGTCCGGG TTGAGATTGA 60 ATCATTATTT GATGGTACTG ATTTCTCTGA ACCACTGACC CGTGCTCGCT TTGAGGAGTT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATTATTT GATGGTACTG ATTTCTCTGA ACCACTGACC CGTGCTCGCT TTGAGGAGTT 120 GAACAATGAT CTCTTCAGAA AGACAATGGG ACCTGTGAAG AAGGCAATGG ATGATGCTGG 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAATGAT CTCTTCAGAA AGACAATGGG ACCTGTGAAG AAGGCAATGG ATGATGCTGG 180 CCTACAAAAG AACCAGATTG ATGAGATTGT TCTTGTTGGT GGAAGCACCA GAATTCCTAA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACAAAAG AACCAGATTG ATGAGATTGT TCTTGTTGGT GGAAGCACCA GAATTCCTAA 240 GGTGCAACAG CTCCTCAAAG ACTATTTTGA CGGGAAGGAG CCCAGCAAGG GTGTAAATCC 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAACAG CTCCTCAAAG ACTATTTTGA CGGGAAGGAG CCCAGCAAGG GTGTAAATCC 300 TGATGAAGCA GTTGCTTATG GTGCTGCTGT TCAAGGTGGT ATCCTCAGTG GTGAGGGTGG 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGAAGCA GTTGCTTATG GTGCTGCTGT TCAAGGTGGT ATCCTCAGTG GTGAGGGTGG 360 AGATGAAACT AAAGGTACAT GATCTAATTA GTTTTCTTGC CATAATTTGC TTATTGGTTT 2745 |||||||||| |||| AGATGAAACT AAAG...... .......... .......... .......... .......... 374 TGATAACGTG TGAGTTTGCA GCTTTTGGTG AATGATTGTG ACATGTTTCT TGTATGCAGA 2805 | .......... .......... .......... .......... .......... .........A 375 TATCCTTCTC CTGGATGTCG CTCCTCTCAC CCTTGGTATT GAAACCGTTG GTGGTGTGAT 2865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTTCTC CTGGATGTCG CTCCTCTCAC CCTTGGTATT GAAACCGTTG GTGGTGTGAT 435 GACCAAATTG ATCCCCAGAA ATACCGTTAT CCCAACCAAG AAGTCCCAGG TCTTCACCAC 2925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAAATTG ATCCCCAGAA ATACCGTTAT CCCAACCAAG AAGTCCCAGG TCTTCACCAC 495 TTACCAAGAC CAGCAGACCA CTGTCTCCAT TCAGGTATTG CTTTGCTTCA TATTTGTGCA 2985 |||||||||| |||||||||| |||||||||| |||| TTACCAAGAC CAGCAGACCA CTGTCTCCAT TCAG...... .......... .......... 529 ATCCTACAGC TCATTATCCA GAAATGTTCA TTAACCTGTC CTCTGGTATG CTCCGATTCT 3045 .......... .......... .......... .......... .......... .......... 529 CACTGTTTTT TCTCCACATG TTGATTACAG GTTTTTGAAG GTGAAAGGAG TCTTACCAAG 3105 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTTTTGAAG GTGAAAGGAG TCTTACCAAG 559 GACTGTAGGA ATCTCGGGAA GTTTGATCTT ACAGGAATTC CTCCAGCTCC AAGGTCAGTT 3165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| GACTGTAGGA ATCTCGGGAA GTTTGATCTT ACAGGAATTC CTCCAGCTCC AAG....... 612 ACATTTCTTC TCTTTAGATA ATTGTACAAA CAACTTTTTG GGATCTGAAT TGGAAACTTG 3225 .......... .......... .......... .......... .......... .......... 612 ATATTGTTTG AACAGGGGAA CCCCCCAAAT TGAGGTCACA TTCGAAGTTG ATGCCAATGG 3285 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GGGAA CCCCCCAAAT TGAGGTCACA TTCGAAGTTG ATGCCAATGG 657 TATCTTGAAT G 3296 |||||||||| | TATCTTGAAT G 668 hqPGS_C08SLm0006K11.1+_SGN-E327301+ (2326 2699,2805 2959,3076 3158,3241 3296) ******************************************************************************** EST sequence 77 +strand 242 n (File: SGN-E316692+) 1 TGGTGGAAGC ACCAGAATTC CTAAGGTGCA ACAGCTCCTC AAAGACTATT TTGACGGGAA 61 GGAGCCCAGC AAGGGTGTAA ATCCTGATGA AGCAGTTGCT TATGGTGCTG CTGTTCAAGG 121 TGGTATCCTC AGTGGTGAGG GTGGAGATGA AACTAAAGAT ATCCTTCTCC TGGATGTCGC 181 TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG ACCAAATTGA TCCCCAGAAA 241 TA Predicted gene structure (within gDNA segment 1942 to 3498): Exon 1 2542 2699 ( 158 n); cDNA 1 158 ( 158 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2888 ( 84 n); cDNA 159 242 ( 84 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E316692+ 1.000 242 1.000 C PGS_C08SLm0006K11.1+_SGN-E316692+ (2542 2699,2805 2888) Alignment (genomic DNA sequence = upper lines): TGGTGGAAGC ACCAGAATTC CTAAGGTGCA ACAGCTCCTC AAAGACTATT TTGACGGGAA 2601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGAAGC ACCAGAATTC CTAAGGTGCA ACAGCTCCTC AAAGACTATT TTGACGGGAA 60 GGAGCCCAGC AAGGGTGTAA ATCCTGATGA AGCAGTTGCT TATGGTGCTG CTGTTCAAGG 2661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCCCAGC AAGGGTGTAA ATCCTGATGA AGCAGTTGCT TATGGTGCTG CTGTTCAAGG 120 TGGTATCCTC AGTGGTGAGG GTGGAGATGA AACTAAAGGT ACATGATCTA ATTAGTTTTC 2721 |||||||||| |||||||||| |||||||||| |||||||| TGGTATCCTC AGTGGTGAGG GTGGAGATGA AACTAAAG.. .......... .......... 158 TTGCCATAAT TTGCTTATTG GTTTTGATAA CGTGTGAGTT TGCAGCTTTT GGTGAATGAT 2781 .......... .......... .......... .......... .......... .......... 158 TGTGACATGT TTCTTGTATG CAGATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG 2841 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG 195 TATTGAAACC GTTGGTGGTG TGATGACCAA ATTGATCCCC AGAAATA 2888 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATTGAAACC GTTGGTGGTG TGATGACCAA ATTGATCCCC AGAAATA 242 hqPGS_C08SLm0006K11.1+_SGN-E316692+ (2542 2699,2805 2888) ******************************************************************************** EST sequence 31 +strand 853 n (File: SGN-E554366+) 1 CCAGAATTCC TAAGGTGCAA CAGCTCCTCA AAGACTATTT TGACGGGAAG GAGCCCAGCA 61 AGGGTGTAAA TCCTGATGAA GCAGTTGCTT ATGGTGCTGC TGTTCAAGGT GGTATCCTCA 121 GTGGTGAGGG TGGAGATGAA ACTAAAGATA TCCTTCTCCT GGATGTCGCT CCTCTCACCC 181 TTGGTATTGA AACCGTTGGT GGTGTGATGA CCAAATTGAT CCCCAGAAAT ACCGTTATCC 241 CAACCAAGAA GTCCCAGGTC TTCACCACTT ACCAAGACCA GCAGACCACT GTCTCCATTC 301 AGGTTTTTGA AGGTGAAAGG AGTCTTACCA AGGACTGTAG GAATCTCGGG AAGTTTGATC 361 TTACAGGAAT TCCTCCAGCT CCAAGGGGAA CCCCCCAAAT TGAGGTCACA TTCGAAGTTG 421 ATGCCAATGG TATCTTGAAT GTCAAAGCAG AAGACAAGGG TACTGGAAAA GCAGAGAAGA 481 TTACCATTAC AAACGACAAG GGCCGCTTAA GCCAAGAAGA GATTGAGCGT ATGGTTCGTG 541 AAGCAGAAGA GTTTGCTGAG GAAGACAAGA AAGTGAAGGA GAAGATTGAT GCCCGTAACG 601 CTTTGGAAAC CTACGTGTAC AACATGAAGA ATCAAATCAA CGACAAGGAC AAATTAGCTG 661 ACAAACTCGA GTCTGATGAG AAGGAGAAGA TTGAGACAGC AACGAAAGAA GCCCTTGAAT 721 GGTTAGACGA TAACCAGAGC GCCGAGAAAG AGGACTATGA CGAGAAGCTC AAAGAGGTCG 781 AGGCAGTTTG CAACCCAATC ATCACAGCTG TTTATCAACG ATCAGGTGGA GCCCCCAGTG 841 GCGGTGCATC GGA Predicted gene structure (within gDNA segment 1953 to 4318): Exon 1 2553 2699 ( 147 n); cDNA 1 147 ( 147 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2959 ( 155 n); cDNA 148 302 ( 155 n); score: 1.000 Intron 2 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 3076 3158 ( 83 n); cDNA 303 385 ( 83 n); score: 1.000 Intron 3 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 3241 3708 ( 468 n); cDNA 386 853 ( 468 n); score: 0.996 MATCH C08SLm0006K11.1+ SGN-E554366+ 0.998 853 1.000 C PGS_C08SLm0006K11.1+_SGN-E554366+ (2553 2699,2805 2959,3076 3158,3241 3708) Alignment (genomic DNA sequence = upper lines): CCAGAATTCC TAAGGTGCAA CAGCTCCTCA AAGACTATTT TGACGGGAAG GAGCCCAGCA 2612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAATTCC TAAGGTGCAA CAGCTCCTCA AAGACTATTT TGACGGGAAG GAGCCCAGCA 60 AGGGTGTAAA TCCTGATGAA GCAGTTGCTT ATGGTGCTGC TGTTCAAGGT GGTATCCTCA 2672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGTAAA TCCTGATGAA GCAGTTGCTT ATGGTGCTGC TGTTCAAGGT GGTATCCTCA 120 GTGGTGAGGG TGGAGATGAA ACTAAAGGTA CATGATCTAA TTAGTTTTCT TGCCATAATT 2732 |||||||||| |||||||||| ||||||| GTGGTGAGGG TGGAGATGAA ACTAAAG... .......... .......... .......... 147 TGCTTATTGG TTTTGATAAC GTGTGAGTTT GCAGCTTTTG GTGAATGATT GTGACATGTT 2792 .......... .......... .......... .......... .......... .......... 147 TCTTGTATGC AGATATCCTT CTCCTGGATG TCGCTCCTCT CACCCTTGGT ATTGAAACCG 2852 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ATATCCTT CTCCTGGATG TCGCTCCTCT CACCCTTGGT ATTGAAACCG 195 TTGGTGGTGT GATGACCAAA TTGATCCCCA GAAATACCGT TATCCCAACC AAGAAGTCCC 2912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGGTGT GATGACCAAA TTGATCCCCA GAAATACCGT TATCCCAACC AAGAAGTCCC 255 AGGTCTTCAC CACTTACCAA GACCAGCAGA CCACTGTCTC CATTCAGGTA TTGCTTTGCT 2972 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGGTCTTCAC CACTTACCAA GACCAGCAGA CCACTGTCTC CATTCAG... .......... 302 TCATATTTGT GCAATCCTAC AGCTCATTAT CCAGAAATGT TCATTAACCT GTCCTCTGGT 3032 .......... .......... .......... .......... .......... .......... 302 ATGCTCCGAT TCTCACTGTT TTTTCTCCAC ATGTTGATTA CAGGTTTTTG AAGGTGAAAG 3092 ||||||| |||||||||| .......... .......... .......... .......... ...GTTTTTG AAGGTGAAAG 319 GAGTCTTACC AAGGACTGTA GGAATCTCGG GAAGTTTGAT CTTACAGGAA TTCCTCCAGC 3152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCTTACC AAGGACTGTA GGAATCTCGG GAAGTTTGAT CTTACAGGAA TTCCTCCAGC 379 TCCAAGGTCA GTTACATTTC TTCTCTTTAG ATAATTGTAC AAACAACTTT TTGGGATCTG 3212 |||||| TCCAAG.... .......... .......... .......... .......... .......... 385 AATTGGAAAC TTGATATTGT TTGAACAGGG GAACCCCCCA AATTGAGGTC ACATTCGAAG 3272 || |||||||||| |||||||||| |||||||||| .......... .......... ........GG GAACCCCCCA AATTGAGGTC ACATTCGAAG 417 TTGATGCCAA TGGTATCTTG AATGTCAAAG CAGAAGACAA GGGTACTGGA AAAGCAGAGA 3332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCCAA TGGTATCTTG AATGTCAAAG CAGAAGACAA GGGTACTGGA AAAGCAGAGA 477 AGATTACCAT TACAAACGAC AAGGGCCGCT TAAGCCAAGA AGAGATTGAG CGTATGGTTC 3392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTACCAT TACAAACGAC AAGGGCCGCT TAAGCCAAGA AGAGATTGAG CGTATGGTTC 537 GTGAAGCAGA AGAGTTTGCT GAGGAAGACA AGAAAGTGAA GGAGAAGATT GATGCCCGTA 3452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGA AGAGTTTGCT GAGGAAGACA AGAAAGTGAA GGAGAAGATT GATGCCCGTA 597 ACGCTTTGGA AACCTACGTG TACAACATGA AGAATCAAAT CAACGACAAG GACAAATTAG 3512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCTTTGGA AACCTACGTG TACAACATGA AGAATCAAAT CAACGACAAG GACAAATTAG 657 CTGACAAACT CGAGTCTGAT GAGAAGGAGA AGATTGAGAC AGCAACGAAA GAAGCCCTTG 3572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGACAAACT CGAGTCTGAT GAGAAGGAGA AGATTGAGAC AGCAACGAAA GAAGCCCTTG 717 AATGGTTAGA CGATAACCAG AGCGCCGAGA AAGAGGACTA TGACGAGAAG CTCAAAGAGG 3632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTTAGA CGATAACCAG AGCGCCGAGA AAGAGGACTA TGACGAGAAG CTCAAAGAGG 777 TCGAGGCAGT TTGCAACCCA ATCATCACAG CTGTTTATCA ACGATCAGGT GGAGCCCCAG 3692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCGAGGCAGT TTGCAACCCA ATCATCACAG CTGTTTATCA ACGATCAGGT GGAGCCCCCA 837 GTGGCGGTGC ATCGGA 3708 |||||||||| |||||| GTGGCGGTGC ATCGGA 853 hqPGS_C08SLm0006K11.1+_SGN-E554366+ (2553 2699,2805 2959,3076 3158,3241 3708) ******************************************************************************** EST sequence 60 +strand 495 n (File: SGN-E287221+) 1 GTGCAACAGC TCCTCAAAGA CTATTTTGAC GGGAAGGAGC CCAGCAAGGG TGTAAATCCT 61 GATGAAGCAG TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA 121 GATGAAACTA AAGATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG TATTGAAACC 181 GTTGGTGGTG TGATGACCAA ATTGATCCCC AGAAATACCG TTATCCCAAC CAAGAAGTCC 241 CAGGTCTTCA CCACTTACCA AGACCAGCAG ACCACTGTCT CCATTCAGGT TTTTGAAGGT 301 GAAAGGAGTC TTACCAAGGA CTGTAGGAAT CTCGGGAAGT TTGATCTTAC AGGAATTCCT 361 CCAGCTCCAA GGGGAACCCC CCAAATTGAG GTCACATTCG AAGTTGATGC CAATGGTATC 421 TTGAATGTCA AAGCAGAAGA CAAGGGTACT GGAAAAGCAG AGAAGATTAC CATTACAAAC 481 GACAAGGGCC GCTTA Predicted gene structure (within gDNA segment 1967 to 3974): Exon 1 2567 2699 ( 133 n); cDNA 1 133 ( 133 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2959 ( 155 n); cDNA 134 288 ( 155 n); score: 1.000 Intron 2 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 3076 3158 ( 83 n); cDNA 289 371 ( 83 n); score: 1.000 Intron 3 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 3241 3364 ( 124 n); cDNA 372 495 ( 124 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E287221+ 1.000 495 1.000 C PGS_C08SLm0006K11.1+_SGN-E287221+ (2567 2699,2805 2959,3076 3158,3241 3364) Alignment (genomic DNA sequence = upper lines): GTGCAACAGC TCCTCAAAGA CTATTTTGAC GGGAAGGAGC CCAGCAAGGG TGTAAATCCT 2626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAACAGC TCCTCAAAGA CTATTTTGAC GGGAAGGAGC CCAGCAAGGG TGTAAATCCT 60 GATGAAGCAG TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA 2686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAGCAG TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA 120 GATGAAACTA AAGGTACATG ATCTAATTAG TTTTCTTGCC ATAATTTGCT TATTGGTTTT 2746 |||||||||| ||| GATGAAACTA AAG....... .......... .......... .......... .......... 133 GATAACGTGT GAGTTTGCAG CTTTTGGTGA ATGATTGTGA CATGTTTCTT GTATGCAGAT 2806 || .......... .......... .......... .......... .......... ........AT 135 ATCCTTCTCC TGGATGTCGC TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG 2866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTTCTCC TGGATGTCGC TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG 195 ACCAAATTGA TCCCCAGAAA TACCGTTATC CCAACCAAGA AGTCCCAGGT CTTCACCACT 2926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAATTGA TCCCCAGAAA TACCGTTATC CCAACCAAGA AGTCCCAGGT CTTCACCACT 255 TACCAAGACC AGCAGACCAC TGTCTCCATT CAGGTATTGC TTTGCTTCAT ATTTGTGCAA 2986 |||||||||| |||||||||| |||||||||| ||| TACCAAGACC AGCAGACCAC TGTCTCCATT CAG....... .......... .......... 288 TCCTACAGCT CATTATCCAG AAATGTTCAT TAACCTGTCC TCTGGTATGC TCCGATTCTC 3046 .......... .......... .......... .......... .......... .......... 288 ACTGTTTTTT CTCCACATGT TGATTACAGG TTTTTGAAGG TGAAAGGAGT CTTACCAAGG 3106 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTTTTGAAGG TGAAAGGAGT CTTACCAAGG 319 ACTGTAGGAA TCTCGGGAAG TTTGATCTTA CAGGAATTCC TCCAGCTCCA AGGTCAGTTA 3166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ACTGTAGGAA TCTCGGGAAG TTTGATCTTA CAGGAATTCC TCCAGCTCCA AG........ 371 CATTTCTTCT CTTTAGATAA TTGTACAAAC AACTTTTTGG GATCTGAATT GGAAACTTGA 3226 .......... .......... .......... .......... .......... .......... 371 TATTGTTTGA ACAGGGGAAC CCCCCAAATT GAGGTCACAT TCGAAGTTGA TGCCAATGGT 3286 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGGAAC CCCCCAAATT GAGGTCACAT TCGAAGTTGA TGCCAATGGT 417 ATCTTGAATG TCAAAGCAGA AGACAAGGGT ACTGGAAAAG CAGAGAAGAT TACCATTACA 3346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGAATG TCAAAGCAGA AGACAAGGGT ACTGGAAAAG CAGAGAAGAT TACCATTACA 477 AACGACAAGG GCCGCTTA 3364 |||||||||| |||||||| AACGACAAGG GCCGCTTA 495 hqPGS_C08SLm0006K11.1+_SGN-E287221+ (2567 2699,2805 2959,3076 3158,3241 3364) ******************************************************************************** EST sequence 74 +strand 425 n (File: SGN-E322961+) 1 TTGCTTATGG TGCTGCTGAT AAGGTGGTAT CCTCAGTGGT GAGGGTGGAG ATGAAACTAA 61 AGATATCCTT CTCCTGGATG TCGCTCCTCT CACCCTTGGT ATTGAAACCG TTGGTGGTGT 121 GATGACCAAA TTGATCCCCA GAAATACCGT TATCCCAACC AAGAAGTCCC AGGTCTTCAC 181 CACTTACCAA GACCAGCAGA CCACTGTCTC CATTCAGGTT TTTGAACGTG AAAGGAGTCT 241 TACCAAGGAC TGTAGGAATC TCCGGAAGTT TGATCTTACA GGAATTCCTC CATCTCCAAA 301 GGGAACCCCC CAAATTGAGG TCACATTCGA AGTTGATGCC AATGGTATCT TGAATGTCAA 361 AGCACAAGAC AAGGGTACTG GAAAAGCAGA GAAGATTACC ATTACAAACG ACCATGGCCG 421 CTTAA Predicted gene structure (within gDNA segment 2037 to 4092): Exon 1 2637 2699 ( 63 n); cDNA 1 62 ( 62 n); score: 0.968 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 2 2805 2959 ( 155 n); cDNA 63 217 ( 155 n); score: 1.000 Intron 2 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 0.96) Exon 3 3076 3158 ( 83 n); cDNA 218 300 ( 83 n); score: 0.952 Intron 3 3159 3240 ( 82 n); Pd: 1.000 (s: 0.94), Pa: 0.994 (s: 1.00) Exon 4 3241 3365 ( 125 n); cDNA 301 425 ( 125 n); score: 0.976 MATCH C08SLm0006K11.1+ SGN-E322961+ 0.979 426 1.002 C PGS_C08SLm0006K11.1+_SGN-E322961+ (2637 2699,2805 2959,3076 3158,3241 3365) Alignment (genomic DNA sequence = upper lines): TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA GATGAAACTA 2696 |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| TTGCTTATGG TGCTGCTGAT -AAGGTGGTA TCCTCAGTGG TGAGGGTGGA GATGAAACTA 59 AAGGTACATG ATCTAATTAG TTTTCTTGCC ATAATTTGCT TATTGGTTTT GATAACGTGT 2756 ||| AAG....... .......... .......... .......... .......... .......... 62 GAGTTTGCAG CTTTTGGTGA ATGATTGTGA CATGTTTCTT GTATGCAGAT ATCCTTCTCC 2816 || |||||||||| .......... .......... .......... .......... ........AT ATCCTTCTCC 74 TGGATGTCGC TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG ACCAAATTGA 2876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGTCGC TCCTCTCACC CTTGGTATTG AAACCGTTGG TGGTGTGATG ACCAAATTGA 134 TCCCCAGAAA TACCGTTATC CCAACCAAGA AGTCCCAGGT CTTCACCACT TACCAAGACC 2936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCAGAAA TACCGTTATC CCAACCAAGA AGTCCCAGGT CTTCACCACT TACCAAGACC 194 AGCAGACCAC TGTCTCCATT CAGGTATTGC TTTGCTTCAT ATTTGTGCAA TCCTACAGCT 2996 |||||||||| |||||||||| ||| AGCAGACCAC TGTCTCCATT CAG....... .......... .......... .......... 217 CATTATCCAG AAATGTTCAT TAACCTGTCC TCTGGTATGC TCCGATTCTC ACTGTTTTTT 3056 .......... .......... .......... .......... .......... .......... 217 CTCCACATGT TGATTACAGG TTTTTGAAGG TGAAAGGAGT CTTACCAAGG ACTGTAGGAA 3116 | |||||||| | |||||||||| |||||||||| |||||||||| .......... .........G TTTTTGAACG TGAAAGGAGT CTTACCAAGG ACTGTAGGAA 258 TCTCGGGAAG TTTGATCTTA CAGGAATTCC TCCAGCTCCA AGGTCAGTTA CATTTCTTCT 3176 |||| ||||| |||||||||| |||||||||| |||| ||||| | TCTCCGGAAG TTTGATCTTA CAGGAATTCC TCCATCTCCA AA........ .......... 300 CTTTAGATAA TTGTACAAAC AACTTTTTGG GATCTGAATT GGAAACTTGA TATTGTTTGA 3236 .......... .......... .......... .......... .......... .......... 300 ACAGGGGAAC CCCCCAAATT GAGGTCACAT TCGAAGTTGA TGCCAATGGT ATCTTGAATG 3296 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GGGAAC CCCCCAAATT GAGGTCACAT TCGAAGTTGA TGCCAATGGT ATCTTGAATG 356 TCAAAGCAGA AGACAAGGGT ACTGGAAAAG CAGAGAAGAT TACCATTACA AACGACAAGG 3356 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | TCAAAGCACA AGACAAGGGT ACTGGAAAAG CAGAGAAGAT TACCATTACA AACGACCATG 416 GCCGCTTAA 3365 ||||||||| GCCGCTTAA 425 hqPGS_C08SLm0006K11.1+_SGN-E322961+ (2637 2699,2805 2959,3076 3158,3241 3365) ******************************************************************************** EST sequence 7 +strand 641 n (File: SGN-E326986+) 1 TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAGATATC CTTCTCCTGG 61 ATGTCGCTCC TCTCACCCTT GGTATTGAAA CCGTTGGTGG TGTGATGACC AAATTGATCC 121 CCAGAAATAC CGTTATCCCA ACCAAGAAGT CCCAGGTCTT CACCACTTAC CAAGACCAGC 181 AGACCACTGT CTCCATTCAG GTTTTTGAAG GTGAAAGGAG TCTTACCAAG GACTGTAGGA 241 ATCTCGGGAA GTTTGATCTT ACAGGAATTC CTCCAGCTCC AAGGGGAACC CCCCAAATTG 301 AGGTCACATT CGAAGTTGAT GCCAATGGTA TCTTGAATGT CAAAGCAGAA GACAAGGGTA 361 CTGGAAAAGC AGAGAAGATT ACCATTACAA ACGACAAGGG CCGCTTAAGC CAAGAAGAGA 421 TTGAGCGTAT GGTTCGTGAA GCAGAAGAGT TTGCTGAGGA AGACAAGAAA GTGAAGGAGA 481 AGATTGATGC CCGTAACGCT TTGGAAACCT ACGTGTACAA CATGAAGAAT CAAATCAACG 541 ACAAGGACAA ATTAGCTGAC AAACTCGAGT CTGATGAGAA GGAGAAGATT GAGACAGCAA 601 CGAAAGAAGC CCTTGAATGG TTAGACGATA ACCAGAGCGC C Predicted gene structure (within gDNA segment 2055 to 4208): Exon 1 2655 2699 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 2805 2959 ( 155 n); cDNA 46 200 ( 155 n); score: 1.000 Intron 2 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 3076 3158 ( 83 n); cDNA 201 283 ( 83 n); score: 1.000 Intron 3 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 3241 3598 ( 358 n); cDNA 284 641 ( 358 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E326986+ 1.000 641 1.000 C PGS_C08SLm0006K11.1+_SGN-E326986+ (2655 2699,2805 2959,3076 3158,3241 3598) Alignment (genomic DNA sequence = upper lines): TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAGGTACA TGATCTAATT 2714 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTCAAGGTGG TATCCTCAGT GGTGAGGGTG GAGATGAAAC TAAAG..... .......... 45 AGTTTTCTTG CCATAATTTG CTTATTGGTT TTGATAACGT GTGAGTTTGC AGCTTTTGGT 2774 .......... .......... .......... .......... .......... .......... 45 GAATGATTGT GACATGTTTC TTGTATGCAG ATATCCTTCT CCTGGATGTC GCTCCTCTCA 2834 |||||||||| |||||||||| |||||||||| .......... .......... .......... ATATCCTTCT CCTGGATGTC GCTCCTCTCA 75 CCCTTGGTAT TGAAACCGTT GGTGGTGTGA TGACCAAATT GATCCCCAGA AATACCGTTA 2894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTGGTAT TGAAACCGTT GGTGGTGTGA TGACCAAATT GATCCCCAGA AATACCGTTA 135 TCCCAACCAA GAAGTCCCAG GTCTTCACCA CTTACCAAGA CCAGCAGACC ACTGTCTCCA 2954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACCAA GAAGTCCCAG GTCTTCACCA CTTACCAAGA CCAGCAGACC ACTGTCTCCA 195 TTCAGGTATT GCTTTGCTTC ATATTTGTGC AATCCTACAG CTCATTATCC AGAAATGTTC 3014 ||||| TTCAG..... .......... .......... .......... .......... .......... 200 ATTAACCTGT CCTCTGGTAT GCTCCGATTC TCACTGTTTT TTCTCCACAT GTTGATTACA 3074 .......... .......... .......... .......... .......... .......... 200 GGTTTTTGAA GGTGAAAGGA GTCTTACCAA GGACTGTAGG AATCTCGGGA AGTTTGATCT 3134 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTTGAA GGTGAAAGGA GTCTTACCAA GGACTGTAGG AATCTCGGGA AGTTTGATCT 259 TACAGGAATT CCTCCAGCTC CAAGGTCAGT TACATTTCTT CTCTTTAGAT AATTGTACAA 3194 |||||||||| |||||||||| |||| TACAGGAATT CCTCCAGCTC CAAG...... .......... .......... .......... 283 ACAACTTTTT GGGATCTGAA TTGGAAACTT GATATTGTTT GAACAGGGGA ACCCCCCAAA 3254 |||| |||||||||| .......... .......... .......... .......... ......GGGA ACCCCCCAAA 297 TTGAGGTCAC ATTCGAAGTT GATGCCAATG GTATCTTGAA TGTCAAAGCA GAAGACAAGG 3314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGTCAC ATTCGAAGTT GATGCCAATG GTATCTTGAA TGTCAAAGCA GAAGACAAGG 357 GTACTGGAAA AGCAGAGAAG ATTACCATTA CAAACGACAA GGGCCGCTTA AGCCAAGAAG 3374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTGGAAA AGCAGAGAAG ATTACCATTA CAAACGACAA GGGCCGCTTA AGCCAAGAAG 417 AGATTGAGCG TATGGTTCGT GAAGCAGAAG AGTTTGCTGA GGAAGACAAG AAAGTGAAGG 3434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGAGCG TATGGTTCGT GAAGCAGAAG AGTTTGCTGA GGAAGACAAG AAAGTGAAGG 477 AGAAGATTGA TGCCCGTAAC GCTTTGGAAA CCTACGTGTA CAACATGAAG AATCAAATCA 3494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATTGA TGCCCGTAAC GCTTTGGAAA CCTACGTGTA CAACATGAAG AATCAAATCA 537 ACGACAAGGA CAAATTAGCT GACAAACTCG AGTCTGATGA GAAGGAGAAG ATTGAGACAG 3554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACAAGGA CAAATTAGCT GACAAACTCG AGTCTGATGA GAAGGAGAAG ATTGAGACAG 597 CAACGAAAGA AGCCCTTGAA TGGTTAGACG ATAACCAGAG CGCC 3598 |||||||||| |||||||||| |||||||||| |||||||||| |||| CAACGAAAGA AGCCCTTGAA TGGTTAGACG ATAACCAGAG CGCC 641 hqPGS_C08SLm0006K11.1+_SGN-E326986+ (2655 2699,2805 2959,3076 3158,3241 3598) ******************************************************************************** EST sequence 76 +strand 579 n (File: SGN-E329946+) 1 GTTTTTGAAG GTGAAAGGAG TCTTACCAAG GACTGTAGGA ATCTCGGGAA GTTTGATCTT 61 ACAGGAATTC CTCCAGCTCC AAGGGGAACC CCCCAAATTG AGGTCACATT CGAAGTTGAT 121 GCCAATGGTA TCTTGAATGT CAAAGCAGAA GACAAGGGTA CTGGAAAAGC AGAGAAGATT 181 ACCATTACAA ACGACAAGGG CCGCTTAAGC CAAGAAGAGA TTGAGCGTAT GGTTCGTGAA 241 GCAGAAGAGT TTGCTGAGGA AGACAAGAAA GTGAAGGAGA AGATTGATGC CCGTAACGCT 301 TTGGAAACCT ACGTGTACAA CATGAAGAAT CAAATCAACG ACAAGGACAA ATTATCTGAC 361 AAACTCGAGT CTGATGAGAA GGAGAAGATT GAGACAGCAA CGAAAGAAGC CCTTGAATGG 421 TTAGACGATA ACCAGAGCGC CGAGAAAGAG GACTATGACG AGAAGCTCAC AGAGGTCGAG 481 GCAGTTTGCA ACCCAATCAT CACAGCTGTT TATCAACGAT CACGTGGAGC CCCATGTGGC 541 GGTGCATCGG AAGAAGAAGA TGACAGCCAT GATGAGCTG Predicted gene structure (within gDNA segment 2476 to 4346): Exon 1 3076 3158 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 3241 3735 ( 495 n); cDNA 84 578 ( 495 n); score: 0.992 MATCH C08SLm0006K11.1+ SGN-E329946+ 0.993 578 0.998 C PGS_C08SLm0006K11.1+_SGN-E329946+ (3076 3158,3241 3735) Alignment (genomic DNA sequence = upper lines): GTTTTTGAAG GTGAAAGGAG TCTTACCAAG GACTGTAGGA ATCTCGGGAA GTTTGATCTT 3135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGAAG GTGAAAGGAG TCTTACCAAG GACTGTAGGA ATCTCGGGAA GTTTGATCTT 60 ACAGGAATTC CTCCAGCTCC AAGGTCAGTT ACATTTCTTC TCTTTAGATA ATTGTACAAA 3195 |||||||||| |||||||||| ||| ACAGGAATTC CTCCAGCTCC AAG....... .......... .......... .......... 83 CAACTTTTTG GGATCTGAAT TGGAAACTTG ATATTGTTTG AACAGGGGAA CCCCCCAAAT 3255 ||||| |||||||||| .......... .......... .......... .......... .....GGGAA CCCCCCAAAT 98 TGAGGTCACA TTCGAAGTTG ATGCCAATGG TATCTTGAAT GTCAAAGCAG AAGACAAGGG 3315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTCACA TTCGAAGTTG ATGCCAATGG TATCTTGAAT GTCAAAGCAG AAGACAAGGG 158 TACTGGAAAA GCAGAGAAGA TTACCATTAC AAACGACAAG GGCCGCTTAA GCCAAGAAGA 3375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGGAAAA GCAGAGAAGA TTACCATTAC AAACGACAAG GGCCGCTTAA GCCAAGAAGA 218 GATTGAGCGT ATGGTTCGTG AAGCAGAAGA GTTTGCTGAG GAAGACAAGA AAGTGAAGGA 3435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGAGCGT ATGGTTCGTG AAGCAGAAGA GTTTGCTGAG GAAGACAAGA AAGTGAAGGA 278 GAAGATTGAT GCCCGTAACG CTTTGGAAAC CTACGTGTAC AACATGAAGA ATCAAATCAA 3495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATTGAT GCCCGTAACG CTTTGGAAAC CTACGTGTAC AACATGAAGA ATCAAATCAA 338 CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG AAGGAGAAGA TTGAGACAGC 3555 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CGACAAGGAC AAATTATCTG ACAAACTCGA GTCTGATGAG AAGGAGAAGA TTGAGACAGC 398 AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC GCCGAGAAAG AGGACTATGA 3615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC GCCGAGAAAG AGGACTATGA 458 CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC ATCACAGCTG TTTATCAACG 3675 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAAGCTC ACAGAGGTCG AGGCAGTTTG CAACCCAATC ATCACAGCTG TTTATCAACG 518 ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA GATGACAGCC ATGATGAGCT 3735 |||| ||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACGTGGA GCCCCATGTG GCGGTGCATC GGAAGAAGAA GATGACAGCC ATGATGAGCT 578 hqPGS_C08SLm0006K11.1+_SGN-E329946+ (3076 3158,3241 3735) ******************************************************************************** EST sequence 75 +strand 402 n (File: SGN-E330198+) 1 TCTTGAATGT CAAAGCAGAA GACAAGGGTA CTGGAAAAGC AGAGAAGATT ACCATTACAA 61 ACGACAAGGG CCGCTTAAGC CAAGAAGAGA TTGAGCGTAT GGTTCGTGAA GCACAAGAGT 121 TTGCTGAGGA AGACAAGAAA GTGAAGGAGA AGATTGATGC CCGTAACGCT TTGGAAACCT 181 ACGTGTGCAA CATGAAGAAT CAAATCAACG ACAAGGACAA ATTAGCTGAC AAACTCGAGT 241 CTGATGAGAA GGAGAAGATT GAGACAGCAA CGAAAGAAGC CCTTGAATGG TTAGACGATA 301 ACCAGAGCGC CGAGAAAGAG GACTATGACG AGAAGCTCAA AGAGGTCGAG GCAGTTTGCA 361 ACCCAATCAT CACAGCTGTT TATCAACGAT CAGGTGGAGC CC Predicted gene structure (within gDNA segment 2688 to 4299): Exon 1 3288 3689 ( 402 n); cDNA 1 402 ( 402 n); score: 0.995 MATCH C08SLm0006K11.1+ SGN-E330198+ 0.995 402 1.000 C PGS_C08SLm0006K11.1+_SGN-E330198+ (3288 3689) Alignment (genomic DNA sequence = upper lines): TCTTGAATGT CAAAGCAGAA GACAAGGGTA CTGGAAAAGC AGAGAAGATT ACCATTACAA 3347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATGT CAAAGCAGAA GACAAGGGTA CTGGAAAAGC AGAGAAGATT ACCATTACAA 60 ACGACAAGGG CCGCTTAAGC CAAGAAGAGA TTGAGCGTAT GGTTCGTGAA GCAGAAGAGT 3407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ACGACAAGGG CCGCTTAAGC CAAGAAGAGA TTGAGCGTAT GGTTCGTGAA GCACAAGAGT 120 TTGCTGAGGA AGACAAGAAA GTGAAGGAGA AGATTGATGC CCGTAACGCT TTGGAAACCT 3467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGAGGA AGACAAGAAA GTGAAGGAGA AGATTGATGC CCGTAACGCT TTGGAAACCT 180 ACGTGTACAA CATGAAGAAT CAAATCAACG ACAAGGACAA ATTAGCTGAC AAACTCGAGT 3527 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGTGCAA CATGAAGAAT CAAATCAACG ACAAGGACAA ATTAGCTGAC AAACTCGAGT 240 CTGATGAGAA GGAGAAGATT GAGACAGCAA CGAAAGAAGC CCTTGAATGG TTAGACGATA 3587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGAGAA GGAGAAGATT GAGACAGCAA CGAAAGAAGC CCTTGAATGG TTAGACGATA 300 ACCAGAGCGC CGAGAAAGAG GACTATGACG AGAAGCTCAA AGAGGTCGAG GCAGTTTGCA 3647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGAGCGC CGAGAAAGAG GACTATGACG AGAAGCTCAA AGAGGTCGAG GCAGTTTGCA 360 ACCCAATCAT CACAGCTGTT TATCAACGAT CAGGTGGAGC CC 3689 |||||||||| |||||||||| |||||||||| |||||||||| || ACCCAATCAT CACAGCTGTT TATCAACGAT CAGGTGGAGC CC 402 hqPGS_C08SLm0006K11.1+_SGN-E330198+ (3288 3689) ******************************************************************************** EST sequence 94 -strand 505 n (File: SGN-E296369-) 1 AACATGAAGA ATCAAATCGC CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 61 AAGGAGAAGA TTGAGGCAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 121 GCCGAGAAAG AGGTCTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 181 ATCGCAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 241 GATGACAGCC ATGATGAGCT GTTAGCTGTT CCAAAGAATT TCCCTTGATA CTGCAAAAAT 301 GCAGGAAATT AGGATATATA GAGTAGTTTT AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 361 GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 421 ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 481 CAGAATTTTA TTTAGTTAAA AAAAA Predicted gene structure (within gDNA segment 2866 to 4652): Exon 1 3476 3972 ( 497 n); cDNA 1 497 ( 497 n); score: 0.978 MATCH C08SLm0006K11.1+ SGN-E296369- 0.978 497 0.984 C PGS_C08SLm0006K11.1+_SGN-E296369- (3476 3972) Alignment (genomic DNA sequence = upper lines): AACATGAAGA ATCAAATCAA CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 3535 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGAAGA ATCAAATCGC CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 60 AAGGAGAAGA TTGAGACAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 3595 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGAAGA TTGAGGCAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 120 GCCGAGAAAG AGGACTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 3655 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGAAAG AGGTCTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 180 ATCACAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 3715 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 240 GATGACAGCC ATGATGAGCT GTAAGCTGTT CCAAAGAATC TCCATTGATA CTGCAAAGAT 3775 |||||||||| |||||||||| || ||||||| ||||||||| ||| |||||| ||||||| || GATGACAGCC ATGATGAGCT GTTAGCTGTT CCAAAGAATT TCCCTTGATA CTGCAAAAAT 300 GCAGGAAATG AGGATATATA GAGTAGTTTG AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 3835 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GCAGGAAATT AGGATATATA GAGTAGTTTT AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 360 GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 3895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 420 ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 3955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 480 CAGAATTTTA TTTAGTT 3972 |||||||||| ||||||| CAGAATTTTA TTTAGTT 497 hqPGS_C08SLm0006K11.1+_SGN-E296369- (3476 3972) ******************************************************************************** EST sequence 95 -strand 505 n (File: SGN-E296509-) 1 AACATGAAGA ATCAAATCGC CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 61 AAGGAGAAGA TTGAGGCAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 121 GCCGAGAAAG AGGTCTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 181 ATCGCAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 241 GATGACAGCC ATGATGAGCT GTTAGCTGTT CCAAAGAATT TCCCTTGATA CTGCAAAAAT 301 GCAGGAAATT AGGATATATA GAGTAGTTTT AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 361 GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 421 ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 481 CAGAATTTTA TTTAGTTAAA AAAAA Predicted gene structure (within gDNA segment 2866 to 4652): Exon 1 3476 3972 ( 497 n); cDNA 1 497 ( 497 n); score: 0.978 MATCH C08SLm0006K11.1+ SGN-E296509- 0.978 497 0.984 C PGS_C08SLm0006K11.1+_SGN-E296509- (3476 3972) Alignment (genomic DNA sequence = upper lines): AACATGAAGA ATCAAATCAA CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 3535 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGAAGA ATCAAATCGC CGACAAGGAC AAATTAGCTG ACAAACTCGA GTCTGATGAG 60 AAGGAGAAGA TTGAGACAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 3595 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGAAGA TTGAGGCAGC AACGAAAGAA GCCCTTGAAT GGTTAGACGA TAACCAGAGC 120 GCCGAGAAAG AGGACTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 3655 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGAAAG AGGTCTATGA CGAGAAGCTC AAAGAGGTCG AGGCAGTTTG CAACCCAATC 180 ATCACAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 3715 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCAGCTG TTTATCAACG ATCAGGTGGA GCCCCAGGTG GCGGTGCATC GGAAGAAGAA 240 GATGACAGCC ATGATGAGCT GTAAGCTGTT CCAAAGAATC TCCATTGATA CTGCAAAGAT 3775 |||||||||| |||||||||| || ||||||| ||||||||| ||| |||||| ||||||| || GATGACAGCC ATGATGAGCT GTTAGCTGTT CCAAAGAATT TCCCTTGATA CTGCAAAAAT 300 GCAGGAAATG AGGATATATA GAGTAGTTTG AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 3835 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GCAGGAAATT AGGATATATA GAGTAGTTTT AAGTGAGGGT TAGTGCAAGT TTTGTCATTC 360 GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 3895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTGAAAA ATCTCTCCCC CCTTCGCTTA GTTTTTTTTA GGTGAAGATT TTACTAAAGG 420 ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 3955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTCCGT TCTTTGAGAA CGACGGCTTG TATGTTGCTT CGATCTGTTG AATACAACTT 480 CAGAATTTTA TTTAGTT 3972 |||||||||| ||||||| CAGAATTTTA TTTAGTT 497 hqPGS_C08SLm0006K11.1+_SGN-E296509- (3476 3972) ******************************************************************************** EST sequence 57 +strand 418 n (File: SGN-E267455+) 1 ACATGAAAAA TCGAATCCAC AACAAGGACA AATTAGCTGA CAAACTCGAG TCTGATGAGA 61 AGGAGAAGAT TGAGACAGCA ACGAAAGAAG CCCTTGAATG GTTAGACGAT AACCAGAGCG 121 CCGAGAAAGA GGACTATGAC GAGAAGCTCA AAGAGGTCGA GGCAGTTTGC AACCCAATCA 181 TCACAGCTGT TTATCAACGA TCAGGTGGAG CCCCAGGTGG CGGTGCATCG GAAGAAGAAG 241 ATGACAGCCA TGATGAGCTG TAAGCTGTTC CAAAGAATCT CCATTGATAC TGCAAAGATG 301 CAGGAAATGA GGATATATAG AGTAGTTTGA AGTGAGGGTT AGTGCAAGTT TTGTCATTCG 361 TTCTGAAAAA TCTCTTCCCC CTTCGCTTAG TTTTTTTTAG GTGAAGATTT TACTAAAG Predicted gene structure (within gDNA segment 2688 to 4504): Exon 1 3477 3894 ( 418 n); cDNA 1 418 ( 418 n); score: 0.988 MATCH C08SLm0006K11.1+ SGN-E267455+ 0.988 418 1.000 C PGS_C08SLm0006K11.1+_SGN-E267455+ (3477 3894) Alignment (genomic DNA sequence = upper lines): ACATGAAGAA TCAAATCAAC GACAAGGACA AATTAGCTGA CAAACTCGAG TCTGATGAGA 3536 ||||||| || || |||| || ||||||||| |||||||||| |||||||||| |||||||||| ACATGAAAAA TCGAATCCAC AACAAGGACA AATTAGCTGA CAAACTCGAG TCTGATGAGA 60 AGGAGAAGAT TGAGACAGCA ACGAAAGAAG CCCTTGAATG GTTAGACGAT AACCAGAGCG 3596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAGAT TGAGACAGCA ACGAAAGAAG CCCTTGAATG GTTAGACGAT AACCAGAGCG 120 CCGAGAAAGA GGACTATGAC GAGAAGCTCA AAGAGGTCGA GGCAGTTTGC AACCCAATCA 3656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGAAAGA GGACTATGAC GAGAAGCTCA AAGAGGTCGA GGCAGTTTGC AACCCAATCA 180 TCACAGCTGT TTATCAACGA TCAGGTGGAG CCCCAGGTGG CGGTGCATCG GAAGAAGAAG 3716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAGCTGT TTATCAACGA TCAGGTGGAG CCCCAGGTGG CGGTGCATCG GAAGAAGAAG 240 ATGACAGCCA TGATGAGCTG TAAGCTGTTC CAAAGAATCT CCATTGATAC TGCAAAGATG 3776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACAGCCA TGATGAGCTG TAAGCTGTTC CAAAGAATCT CCATTGATAC TGCAAAGATG 300 CAGGAAATGA GGATATATAG AGTAGTTTGA AGTGAGGGTT AGTGCAAGTT TTGTCATTCG 3836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGAAATGA GGATATATAG AGTAGTTTGA AGTGAGGGTT AGTGCAAGTT TTGTCATTCG 360 TTCTGAAAAA TCTCTCCCCC CTTCGCTTAG TTTTTTTTAG GTGAAGATTT TACTAAAG 3894 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| TTCTGAAAAA TCTCTTCCCC CTTCGCTTAG TTTTTTTTAG GTGAAGATTT TACTAAAG 418 hqPGS_C08SLm0006K11.1+_SGN-E267455+ (3477 3894) ******************************************************************************** EST sequence 54 +strand 745 n (File: SGN-E334225+) 1 TTGGCCCTGC TTTGAGGTTT CGCCAGGATT CTCTCACAGA GCCGCCTCAC ACTGTACCCG 61 CAACCCGGTC CACAACCCAT TTTCCCTTTC ATTCCGGTTC ATCTTCTCCA TCACCGGCAG 121 AAGGCGGAAA GTGGAGAACG AAGATGACTG AAGTCGCGAG CAACGTTGTA CACGAAATCC 181 TAGGCGGACG AGCTCAAGAT GTAGATCAGC CTATTATCGA CTATATTATC AATGTCGTCG 241 CCGATGAAGA TTTCGATTTT GGTCACGACG GTGAAGGTGC TTTTGAAGCC CTTGGAGAGC 301 TACTTGTCGA TTCCGGTTGT GTTACTGACT TCTCCGAATG TCGTGCGGTT TGTAGCAAGT 361 TGTCTGAGAA GTTAGAGAAG CATGAATTGG CTAAACCCCA ACCGACGGTG AGAAGCTTAA 421 AAATGCCGCT GAGAATGTTT GATGGAATGG ATGAAGAGGA AGCTCCAAAG AATAAAAAGC 481 CAGAACCAGT TGATGGTCCT TTGCTCACAG AACGTGACAA GATTAAGATT GAAAGAAGGA 541 AGAGGAAAGA GGAACGCCTG AGAGAGGCAG AATACCAAGA ACACTTGAAA GAAGTGGAGG 601 AAGTGAAAGC TGGTATGCCT TTAGTGTGTG TGAATCATGA TGGTCAGGGT GATGGACCAA 661 CTGTTAAGGA TATCCGTATG GAGAACTTCA TATATCTNGT CGTGGTCGTG AACTTATTGT 721 CGATGGTTCT GTCACGCTTT CTTTG Predicted gene structure (within gDNA segment 20412 to 23785): Exon 1 21012 21358 ( 347 n); cDNA 1 347 ( 347 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 348 566 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23165 ( 179 n); cDNA 567 744 ( 178 n); score: 0.972 MATCH C08SLm0006K11.1+ SGN-E334225+ 0.993 745 1.000 C PGS_C08SLm0006K11.1+_SGN-E334225+ (21012 21358,22373 22591,22987 23165) Alignment (genomic DNA sequence = upper lines): TTGGCCCTGC TTTGAGGTTT CGCCAGGATT CTCTCACAGA GCCGCCTCAC ACTGTACCCG 21071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCCCTGC TTTGAGGTTT CGCCAGGATT CTCTCACAGA GCCGCCTCAC ACTGTACCCG 60 CAACCCGGTC CACAACCCAT TTTCCCTTTC ATTCCGGTTC ATCTTCTCCA TCACCGGCAG 21131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCCGGTC CACAACCCAT TTTCCCTTTC ATTCCGGTTC ATCTTCTCCA TCACCGGCAG 120 AAGGCGGAAA GTGGAGAACG AAGATGACTG AAGTCGCGAG CAACGTTGTA CACGAAATCC 21191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCGGAAA GTGGAGAACG AAGATGACTG AAGTCGCGAG CAACGTTGTA CACGAAATCC 180 TAGGCGGACG AGCTCAAGAT GTAGATCAGC CTATTATCGA CTATATTATC AATGTCGTCG 21251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGCGGACG AGCTCAAGAT GTAGATCAGC CTATTATCGA CTATATTATC AATGTCGTCG 240 CCGATGAAGA TTTCGATTTT GGTCACGACG GTGAAGGTGC TTTTGAAGCC CTTGGAGAGC 21311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATGAAGA TTTCGATTTT GGTCACGACG GTGAAGGTGC TTTTGAAGCC CTTGGAGAGC 300 TACTTGTCGA TTCCGGTTGT GTTACTGACT TCTCCGAATG TCGTGCGGTA TTAATACTTC 21371 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TACTTGTCGA TTCCGGTTGT GTTACTGACT TCTCCGAATG TCGTGCG... .......... 347 CATTCCATGC TCAATTTCGT TATTGCTTAG GCTGAGTTTC ATATTTTTCT GCTCGAAATT 21431 .......... .......... .......... .......... .......... .......... 347 TGTTAGATTG AATTGATTCT GAAAGATGTG CTTATTATAC TGTTAAGATA TTTTTCTGCT 21491 .......... .......... .......... .......... .......... .......... 347 CGAAATTTGT TATATTGAAT TGATTCTGAA AGATGTGCTT ATCATACTGT TAATAGTTTG 21551 .......... .......... .......... .......... .......... .......... 347 GATTGTTGAC TAGGAACATA ATTTACGAAC TAAATAACAT TTTTGAAACT TGTGGTCTAA 21611 .......... .......... .......... .......... .......... .......... 347 ATAAGCCATA GACATTTGTT TGACTACTAT CTATGAGTGG AAATGAGAAC TTTAGAGTTA 21671 .......... .......... .......... .......... .......... .......... 347 AATACTTTTT GGATATAGGA AAACTACCAT TCTTTTTAGT ATTTTAAGAG TGAAAAGTGA 21731 .......... .......... .......... .......... .......... .......... 347 GAAGTTTAAA GTTGAACCTC CAGGCATGAC CCAAGCTAGT CTAAACAAGG AGAAGAACAC 21791 .......... .......... .......... .......... .......... .......... 347 AATTCAAAAG TCTTTTCAAG TTAGTCTAAA CAAGGAGAAG AACATATTCC AAAAGTCTCT 21851 .......... .......... .......... .......... .......... .......... 347 TGCTACTGTA AACAACGACA GGTTTTGATG AATAAAATTT GGACTTAAAA GTTAAGTGAT 21911 .......... .......... .......... .......... .......... .......... 347 TATTAGCTTC AGTTTATCAT TTATGAAGCA AGGATTGTGT GATTTAGTTA GAGAGCTTAT 21971 .......... .......... .......... .......... .......... .......... 347 GATGGCCTCA AAAGAAAATC ATTTGTAAGT GAATTTGGTC TGAAATAGAG AGTGACCAAC 22031 .......... .......... .......... .......... .......... .......... 347 ACTGTATTGG ACTTAGATGT TGTCAGTTGA ATTGATTTGG TAATAGCTCA TTTATGATTA 22091 .......... .......... .......... .......... .......... .......... 347 GAGGACTTGT TAAACCAGAG AAATAAACAG CCATTTAAGG GGACATAGAA TTCAAATGGG 22151 .......... .......... .......... .......... .......... .......... 347 TGAATAACTC TCATCATAGA GCAATTTGTG AACTGAAAAG TTGAAGTATA ATATGGCGAA 22211 .......... .......... .......... .......... .......... .......... 347 CAAAAATACA AGTAATTTCT TAGTACCAGA ATTTATGGTT ATACCAGCAT TTACTATTGT 22271 .......... .......... .......... .......... .......... .......... 347 GATTGTTAGA CTCCTCTATG TTGGTCTTTG TTGCATGCCG TTGTGTTTAT ACATTGAGTC 22331 .......... .......... .......... .......... .......... .......... 347 GTCTGCAATC TATCTTCAGT AGCATTTTCC AACCATGACA GGTTTGTAGC AAGTTGTCTG 22391 ||||||||| |||||||||| .......... .......... .......... .......... .GTTTGTAGC AAGTTGTCTG 366 AGAAGTTAGA GAAGCATGAA TTGGCTAAAC CCCAACCGAC GGTGAGAAGC TTAAAAATGC 22451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTAGA GAAGCATGAA TTGGCTAAAC CCCAACCGAC GGTGAGAAGC TTAAAAATGC 426 CGCTGAGAAT GTTTGATGGA ATGGATGAAG AGGAAGCTCC AAAGAATAAA AAGCCAGAAC 22511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTGAGAAT GTTTGATGGA ATGGATGAAG AGGAAGCTCC AAAGAATAAA AAGCCAGAAC 486 CAGTTGATGG TCCTTTGCTC ACAGAACGTG ACAAGATTAA GATTGAAAGA AGGAAGAGGA 22571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGATGG TCCTTTGCTC ACAGAACGTG ACAAGATTAA GATTGAAAGA AGGAAGAGGA 546 AAGAGGAACG CCTGAGAGAG GTGAGTGAAA AAATGATAAT CTTGATCGTA ATCAGAATGA 22631 |||||||||| |||||||||| AAGAGGAACG CCTGAGAGAG .......... .......... .......... .......... 566 ACCTGTTTGA CACAAATATT GGTTGTTAAA TAAATATGTT GGGAAGACTG CTCTTCTTGT 22691 .......... .......... .......... .......... .......... .......... 566 CTATGAACTA CACTGATTTG AGTTAACACT TCACTGAGTT TCCATTTATC ATTCTAATGG 22751 .......... .......... .......... .......... .......... .......... 566 GGTGTGTATG TGTGTGACAT TTCAAAATAC TCCTTTTGTT GGATAATGGT TGTCTTCGTG 22811 .......... .......... .......... .......... .......... .......... 566 AAGTTATGAG ACAGAATAAA TGTAATCACT TTCCTATTAC TGCTTTAAAA ATTGTAACCG 22871 .......... .......... .......... .......... .......... .......... 566 GTAACCCTCT ACTTTCTGCC ATGTTGATGA AAAGAAGAGG GGAAAAAAAA AGAAGAAGAT 22931 .......... .......... .......... .......... .......... .......... 566 GAAAGTGGCT GGTTTACTCC TTCATTCTTT TAATCTGTAT GGCTTGATTC TGCAGGCAGA 22991 ||||| .......... .......... .......... .......... .......... .....GCAGA 571 ATACCAAGAA CACTTGAAAG AAGTGGAGGA AGTGAAAGCT GGTATGCCTT TAGTGTGTGT 23051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACCAAGAA CACTTGAAAG AAGTGGAGGA AGTGAAAGCT GGTATGCCTT TAGTGTGTGT 631 GAATCATGAT GGTCAGGGTG ATGGACCAAC TGTTAAGGAT ATCCGTATGG AGAACTTCAA 23111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GAATCATGAT GGTCAGGGTG ATGGACCAAC TGTTAAGGAT ATCCGTATGG AGAACTTC-A 690 TATATCTGTC GGTGGTCGTG AACTTATTGT CGATGGTTCT GTCACGCTTT CTTT 23165 ||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| TATATCTNGT CGTGGTCGTG AACTTATTGT CGATGGTTCT GTCACGCTTT CTTT 744 hqPGS_C08SLm0006K11.1+_SGN-E334225+ (21012 21358,22373 22591,22987 23165) ******************************************************************************** EST sequence 29 +strand 697 n (File: SGN-E328851+) 1 TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 61 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 121 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 181 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 241 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 301 TGTGTTACTG ACTTCTCCGA ATGTCGTGCG GTTTGTAGCA AGTTGTCTGA GAAGTTAGAG 361 AAGCATGAAT TGGCTAAACC CCAACCGACG GTGAGAAGCT TAAAAATGCC GCTGAGAATG 421 TTTGATGGAA TGGATGAAGA GGAAGCTCCA AAGAATAAAA AGCCAGAACC AGTTGATGGT 481 CCTTTGCTCA CAGAACGTGA CAAGATTAAG ATTGAAAGAA GGAAGAGGAA AGAGGAACGC 541 CTGAGAGAGG CAGAATACCA AGAACACTTG AAAGAAGTGG AGGAAGTGAA AGCTGGTATG 601 CCTTTAGTGT GTGTGAATCA TGATGGTCAG GGTGATGGAC CAACTGTTAA GGATATCCGT 661 ATGGAGAACT TCATATATCT GTCGGTGGTC GTGAACT Predicted gene structure (within gDNA segment 20429 to 23745): Exon 1 21029 21358 ( 330 n); cDNA 1 330 ( 330 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 331 549 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23135 ( 149 n); cDNA 550 697 ( 148 n); score: 0.993 MATCH C08SLm0006K11.1+ SGN-E328851+ 0.999 698 1.001 C PGS_C08SLm0006K11.1+_SGN-E328851+ (21029 21358,22373 22591,22987 23135) Alignment (genomic DNA sequence = upper lines): TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 60 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 120 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 21208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 180 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 21268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 240 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 21328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 300 TGTGTTACTG ACTTCTCCGA ATGTCGTGCG GTATTAATAC TTCCATTCCA TGCTCAATTT 21388 |||||||||| |||||||||| |||||||||| TGTGTTACTG ACTTCTCCGA ATGTCGTGCG .......... .......... .......... 330 CGTTATTGCT TAGGCTGAGT TTCATATTTT TCTGCTCGAA ATTTGTTAGA TTGAATTGAT 21448 .......... .......... .......... .......... .......... .......... 330 TCTGAAAGAT GTGCTTATTA TACTGTTAAG ATATTTTTCT GCTCGAAATT TGTTATATTG 21508 .......... .......... .......... .......... .......... .......... 330 AATTGATTCT GAAAGATGTG CTTATCATAC TGTTAATAGT TTGGATTGTT GACTAGGAAC 21568 .......... .......... .......... .......... .......... .......... 330 ATAATTTACG AACTAAATAA CATTTTTGAA ACTTGTGGTC TAAATAAGCC ATAGACATTT 21628 .......... .......... .......... .......... .......... .......... 330 GTTTGACTAC TATCTATGAG TGGAAATGAG AACTTTAGAG TTAAATACTT TTTGGATATA 21688 .......... .......... .......... .......... .......... .......... 330 GGAAAACTAC CATTCTTTTT AGTATTTTAA GAGTGAAAAG TGAGAAGTTT AAAGTTGAAC 21748 .......... .......... .......... .......... .......... .......... 330 CTCCAGGCAT GACCCAAGCT AGTCTAAACA AGGAGAAGAA CACAATTCAA AAGTCTTTTC 21808 .......... .......... .......... .......... .......... .......... 330 AAGTTAGTCT AAACAAGGAG AAGAACATAT TCCAAAAGTC TCTTGCTACT GTAAACAACG 21868 .......... .......... .......... .......... .......... .......... 330 ACAGGTTTTG ATGAATAAAA TTTGGACTTA AAAGTTAAGT GATTATTAGC TTCAGTTTAT 21928 .......... .......... .......... .......... .......... .......... 330 CATTTATGAA GCAAGGATTG TGTGATTTAG TTAGAGAGCT TATGATGGCC TCAAAAGAAA 21988 .......... .......... .......... .......... .......... .......... 330 ATCATTTGTA AGTGAATTTG GTCTGAAATA GAGAGTGACC AACACTGTAT TGGACTTAGA 22048 .......... .......... .......... .......... .......... .......... 330 TGTTGTCAGT TGAATTGATT TGGTAATAGC TCATTTATGA TTAGAGGACT TGTTAAACCA 22108 .......... .......... .......... .......... .......... .......... 330 GAGAAATAAA CAGCCATTTA AGGGGACATA GAATTCAAAT GGGTGAATAA CTCTCATCAT 22168 .......... .......... .......... .......... .......... .......... 330 AGAGCAATTT GTGAACTGAA AAGTTGAAGT ATAATATGGC GAACAAAAAT ACAAGTAATT 22228 .......... .......... .......... .......... .......... .......... 330 TCTTAGTACC AGAATTTATG GTTATACCAG CATTTACTAT TGTGATTGTT AGACTCCTCT 22288 .......... .......... .......... .......... .......... .......... 330 ATGTTGGTCT TTGTTGCATG CCGTTGTGTT TATACATTGA GTCGTCTGCA ATCTATCTTC 22348 .......... .......... .......... .......... .......... .......... 330 AGTAGCATTT TCCAACCATG ACAGGTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 22408 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 366 GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 22468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 426 GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 22528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 486 CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 22588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 546 GAGGTGAGTG AAAAAATGAT AATCTTGATC GTAATCAGAA TGAACCTGTT TGACACAAAT 22648 ||| GAG....... .......... .......... .......... .......... .......... 549 ATTGGTTGTT AAATAAATAT GTTGGGAAGA CTGCTCTTCT TGTCTATGAA CTACACTGAT 22708 .......... .......... .......... .......... .......... .......... 549 TTGAGTTAAC ACTTCACTGA GTTTCCATTT ATCATTCTAA TGGGGTGTGT ATGTGTGTGA 22768 .......... .......... .......... .......... .......... .......... 549 CATTTCAAAA TACTCCTTTT GTTGGATAAT GGTTGTCTTC GTGAAGTTAT GAGACAGAAT 22828 .......... .......... .......... .......... .......... .......... 549 AAATGTAATC ACTTTCCTAT TACTGCTTTA AAAATTGTAA CCGGTAACCC TCTACTTTCT 22888 .......... .......... .......... .......... .......... .......... 549 GCCATGTTGA TGAAAAGAAG AGGGGAAAAA AAAAGAAGAA GATGAAAGTG GCTGGTTTAC 22948 .......... .......... .......... .......... .......... .......... 549 TCCTTCATTC TTTTAATCTG TATGGCTTGA TTCTGCAGGC AGAATACCAA GAACACTTGA 23008 || |||||||||| |||||||||| .......... .......... .......... ........GC AGAATACCAA GAACACTTGA 571 AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG 23068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG 631 GTGATGGACC AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GTCGGTGGTC 23128 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GTGATGGACC AACTGTTAAG GATATCCGTA TGGAGAACTT C-ATATATCT GTCGGTGGTC 690 GTGAACT 23135 ||||||| GTGAACT 697 hqPGS_C08SLm0006K11.1+_SGN-E328851+ (21029 21358,22373 22591,22987 23135) ******************************************************************************** EST sequence 15 +strand 683 n (File: SGN-E328214+) 1 TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 61 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 121 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 181 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 241 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 301 TGTGTTACTG ACTTCTCCGA ATGTCGTGCG GTTTGTAGCA AGTTGTCTGA GAAGTTAGAG 361 AAGCATGAAT TGGCTAAACC CCAACCGACG GTGAGAAGCT TAAAAATGCC GCTGAGAATG 421 TTTGATGGAA TGGATGAAGA GGAAGCTCCA AAGAATAAAA AGCCAGAACC AGTTGATGGT 481 CCTTTGCTCA CAGAACGTGA CAAGATTAAG ATTGAAAGAA GGAAGAGGAA AGAGGAACGC 541 CTGAGAGAGG CAGAATACCA AGAACACTTG AAAGAAGTGG AGGAAGTGAA AGCTGGTATG 601 CCTTTAGTGT GTGTGAATCA TGATGGTCAG GNTGATGGAC CAACTGTTAA GGATATCCGT 661 ATGGAGAAAC TTCATATATC TGT Predicted gene structure (within gDNA segment 20429 to 23865): Exon 1 21029 21358 ( 330 n); cDNA 1 330 ( 330 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 331 549 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23120 ( 134 n); cDNA 550 683 ( 134 n); score: 0.963 MATCH C08SLm0006K11.1+ SGN-E328214+ 0.993 683 1.000 C PGS_C08SLm0006K11.1+_SGN-E328214+ (21029 21358,22373 22591,22987 23120) Alignment (genomic DNA sequence = upper lines): TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 60 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 120 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 21208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 180 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 21268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 240 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 21328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 300 TGTGTTACTG ACTTCTCCGA ATGTCGTGCG GTATTAATAC TTCCATTCCA TGCTCAATTT 21388 |||||||||| |||||||||| |||||||||| TGTGTTACTG ACTTCTCCGA ATGTCGTGCG .......... .......... .......... 330 CGTTATTGCT TAGGCTGAGT TTCATATTTT TCTGCTCGAA ATTTGTTAGA TTGAATTGAT 21448 .......... .......... .......... .......... .......... .......... 330 TCTGAAAGAT GTGCTTATTA TACTGTTAAG ATATTTTTCT GCTCGAAATT TGTTATATTG 21508 .......... .......... .......... .......... .......... .......... 330 AATTGATTCT GAAAGATGTG CTTATCATAC TGTTAATAGT TTGGATTGTT GACTAGGAAC 21568 .......... .......... .......... .......... .......... .......... 330 ATAATTTACG AACTAAATAA CATTTTTGAA ACTTGTGGTC TAAATAAGCC ATAGACATTT 21628 .......... .......... .......... .......... .......... .......... 330 GTTTGACTAC TATCTATGAG TGGAAATGAG AACTTTAGAG TTAAATACTT TTTGGATATA 21688 .......... .......... .......... .......... .......... .......... 330 GGAAAACTAC CATTCTTTTT AGTATTTTAA GAGTGAAAAG TGAGAAGTTT AAAGTTGAAC 21748 .......... .......... .......... .......... .......... .......... 330 CTCCAGGCAT GACCCAAGCT AGTCTAAACA AGGAGAAGAA CACAATTCAA AAGTCTTTTC 21808 .......... .......... .......... .......... .......... .......... 330 AAGTTAGTCT AAACAAGGAG AAGAACATAT TCCAAAAGTC TCTTGCTACT GTAAACAACG 21868 .......... .......... .......... .......... .......... .......... 330 ACAGGTTTTG ATGAATAAAA TTTGGACTTA AAAGTTAAGT GATTATTAGC TTCAGTTTAT 21928 .......... .......... .......... .......... .......... .......... 330 CATTTATGAA GCAAGGATTG TGTGATTTAG TTAGAGAGCT TATGATGGCC TCAAAAGAAA 21988 .......... .......... .......... .......... .......... .......... 330 ATCATTTGTA AGTGAATTTG GTCTGAAATA GAGAGTGACC AACACTGTAT TGGACTTAGA 22048 .......... .......... .......... .......... .......... .......... 330 TGTTGTCAGT TGAATTGATT TGGTAATAGC TCATTTATGA TTAGAGGACT TGTTAAACCA 22108 .......... .......... .......... .......... .......... .......... 330 GAGAAATAAA CAGCCATTTA AGGGGACATA GAATTCAAAT GGGTGAATAA CTCTCATCAT 22168 .......... .......... .......... .......... .......... .......... 330 AGAGCAATTT GTGAACTGAA AAGTTGAAGT ATAATATGGC GAACAAAAAT ACAAGTAATT 22228 .......... .......... .......... .......... .......... .......... 330 TCTTAGTACC AGAATTTATG GTTATACCAG CATTTACTAT TGTGATTGTT AGACTCCTCT 22288 .......... .......... .......... .......... .......... .......... 330 ATGTTGGTCT TTGTTGCATG CCGTTGTGTT TATACATTGA GTCGTCTGCA ATCTATCTTC 22348 .......... .......... .......... .......... .......... .......... 330 AGTAGCATTT TCCAACCATG ACAGGTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 22408 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 366 GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 22468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 426 GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 22528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 486 CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 22588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 546 GAGGTGAGTG AAAAAATGAT AATCTTGATC GTAATCAGAA TGAACCTGTT TGACACAAAT 22648 ||| GAG....... .......... .......... .......... .......... .......... 549 ATTGGTTGTT AAATAAATAT GTTGGGAAGA CTGCTCTTCT TGTCTATGAA CTACACTGAT 22708 .......... .......... .......... .......... .......... .......... 549 TTGAGTTAAC ACTTCACTGA GTTTCCATTT ATCATTCTAA TGGGGTGTGT ATGTGTGTGA 22768 .......... .......... .......... .......... .......... .......... 549 CATTTCAAAA TACTCCTTTT GTTGGATAAT GGTTGTCTTC GTGAAGTTAT GAGACAGAAT 22828 .......... .......... .......... .......... .......... .......... 549 AAATGTAATC ACTTTCCTAT TACTGCTTTA AAAATTGTAA CCGGTAACCC TCTACTTTCT 22888 .......... .......... .......... .......... .......... .......... 549 GCCATGTTGA TGAAAAGAAG AGGGGAAAAA AAAAGAAGAA GATGAAAGTG GCTGGTTTAC 22948 .......... .......... .......... .......... .......... .......... 549 TCCTTCATTC TTTTAATCTG TATGGCTTGA TTCTGCAGGC AGAATACCAA GAACACTTGA 23008 || |||||||||| |||||||||| .......... .......... .......... ........GC AGAATACCAA GAACACTTGA 571 AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG 23068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG 631 GTGATGGACC AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GT 23120 ||||||||| |||||||||| |||||||||| ||||||| | |||||||| || NTGATGGACC AACTGTTAAG GATATCCGTA TGGAGAAACT TCATATATCT GT 683 hqPGS_C08SLm0006K11.1+_SGN-E328214+ (21029 21358,22373 22591,22987 23120) ******************************************************************************** EST sequence 21 +strand 625 n (File: SGN-E317338+) 1 TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 61 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 121 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 181 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 241 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 301 TGTGTTACTG ACTTCTCCGA ATTTCGTGCG GTTTGTAGCA AGTTGTCTGA GAAGTTAGAG 361 AAGCATGAAT TGGCTAAACC CCAACCGACG GTGAGAAGCT TAAAAATGCC GCTGAGAATG 421 TTTGATGGAA TGGATGAAGA GGAAGCTCCA AAGAATAAAA AGCCAGAACC AGTTGATGGT 481 CCTTTGCTCA CAGAACGTGA CAAGATTAAG ATTGAAAGAA GGAAGAGGAA AGAGGAACGC 541 CTGAGAGAGG CAGAATACCA AGAACACTTG AAAGAAGTGG AGGAAGTGAA AGCTGGTATG 601 CCTTTAGTGT GTGTGAATCA TGATG Predicted gene structure (within gDNA segment 20429 to 23672): Exon 1 21029 21358 ( 330 n); cDNA 1 330 ( 330 n); score: 0.997 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 0.98), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 331 549 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23062 ( 76 n); cDNA 550 625 ( 76 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E317338+ 0.998 625 1.000 C PGS_C08SLm0006K11.1+_SGN-E317338+ (21029 21358,22373 22591,22987 23062) Alignment (genomic DNA sequence = upper lines): TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGCCAGG ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC 60 CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCCCT TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA 120 ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 21208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGATGA CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA 180 GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 21268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGATC AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT 240 TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 21328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCACG ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT 300 TGTGTTACTG ACTTCTCCGA ATGTCGTGCG GTATTAATAC TTCCATTCCA TGCTCAATTT 21388 |||||||||| |||||||||| || ||||||| TGTGTTACTG ACTTCTCCGA ATTTCGTGCG .......... .......... .......... 330 CGTTATTGCT TAGGCTGAGT TTCATATTTT TCTGCTCGAA ATTTGTTAGA TTGAATTGAT 21448 .......... .......... .......... .......... .......... .......... 330 TCTGAAAGAT GTGCTTATTA TACTGTTAAG ATATTTTTCT GCTCGAAATT TGTTATATTG 21508 .......... .......... .......... .......... .......... .......... 330 AATTGATTCT GAAAGATGTG CTTATCATAC TGTTAATAGT TTGGATTGTT GACTAGGAAC 21568 .......... .......... .......... .......... .......... .......... 330 ATAATTTACG AACTAAATAA CATTTTTGAA ACTTGTGGTC TAAATAAGCC ATAGACATTT 21628 .......... .......... .......... .......... .......... .......... 330 GTTTGACTAC TATCTATGAG TGGAAATGAG AACTTTAGAG TTAAATACTT TTTGGATATA 21688 .......... .......... .......... .......... .......... .......... 330 GGAAAACTAC CATTCTTTTT AGTATTTTAA GAGTGAAAAG TGAGAAGTTT AAAGTTGAAC 21748 .......... .......... .......... .......... .......... .......... 330 CTCCAGGCAT GACCCAAGCT AGTCTAAACA AGGAGAAGAA CACAATTCAA AAGTCTTTTC 21808 .......... .......... .......... .......... .......... .......... 330 AAGTTAGTCT AAACAAGGAG AAGAACATAT TCCAAAAGTC TCTTGCTACT GTAAACAACG 21868 .......... .......... .......... .......... .......... .......... 330 ACAGGTTTTG ATGAATAAAA TTTGGACTTA AAAGTTAAGT GATTATTAGC TTCAGTTTAT 21928 .......... .......... .......... .......... .......... .......... 330 CATTTATGAA GCAAGGATTG TGTGATTTAG TTAGAGAGCT TATGATGGCC TCAAAAGAAA 21988 .......... .......... .......... .......... .......... .......... 330 ATCATTTGTA AGTGAATTTG GTCTGAAATA GAGAGTGACC AACACTGTAT TGGACTTAGA 22048 .......... .......... .......... .......... .......... .......... 330 TGTTGTCAGT TGAATTGATT TGGTAATAGC TCATTTATGA TTAGAGGACT TGTTAAACCA 22108 .......... .......... .......... .......... .......... .......... 330 GAGAAATAAA CAGCCATTTA AGGGGACATA GAATTCAAAT GGGTGAATAA CTCTCATCAT 22168 .......... .......... .......... .......... .......... .......... 330 AGAGCAATTT GTGAACTGAA AAGTTGAAGT ATAATATGGC GAACAAAAAT ACAAGTAATT 22228 .......... .......... .......... .......... .......... .......... 330 TCTTAGTACC AGAATTTATG GTTATACCAG CATTTACTAT TGTGATTGTT AGACTCCTCT 22288 .......... .......... .......... .......... .......... .......... 330 ATGTTGGTCT TTGTTGCATG CCGTTGTGTT TATACATTGA GTCGTCTGCA ATCTATCTTC 22348 .......... .......... .......... .......... .......... .......... 330 AGTAGCATTT TCCAACCATG ACAGGTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 22408 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT 366 GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 22468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGGCTA AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT 426 GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 22528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGGATG AAGAGGAAGC TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG 486 CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 22588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACAGAAC GTGACAAGAT TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA 546 GAGGTGAGTG AAAAAATGAT AATCTTGATC GTAATCAGAA TGAACCTGTT TGACACAAAT 22648 ||| GAG....... .......... .......... .......... .......... .......... 549 ATTGGTTGTT AAATAAATAT GTTGGGAAGA CTGCTCTTCT TGTCTATGAA CTACACTGAT 22708 .......... .......... .......... .......... .......... .......... 549 TTGAGTTAAC ACTTCACTGA GTTTCCATTT ATCATTCTAA TGGGGTGTGT ATGTGTGTGA 22768 .......... .......... .......... .......... .......... .......... 549 CATTTCAAAA TACTCCTTTT GTTGGATAAT GGTTGTCTTC GTGAAGTTAT GAGACAGAAT 22828 .......... .......... .......... .......... .......... .......... 549 AAATGTAATC ACTTTCCTAT TACTGCTTTA AAAATTGTAA CCGGTAACCC TCTACTTTCT 22888 .......... .......... .......... .......... .......... .......... 549 GCCATGTTGA TGAAAAGAAG AGGGGAAAAA AAAAGAAGAA GATGAAAGTG GCTGGTTTAC 22948 .......... .......... .......... .......... .......... .......... 549 TCCTTCATTC TTTTAATCTG TATGGCTTGA TTCTGCAGGC AGAATACCAA GAACACTTGA 23008 || |||||||||| |||||||||| .......... .......... .......... ........GC AGAATACCAA GAACACTTGA 571 AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATG 23062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGAAGTGGA GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATG 625 hqPGS_C08SLm0006K11.1+_SGN-E317338+ (21029 21358,22373 22591,22987 23062) ******************************************************************************** EST sequence 13 +strand 744 n (File: SGN-E315868+) 1 AGGATTCTCT CACAGAGCCG CCTCACACTG TACCCGCAAC CCGGTCCACA ACCCATTTTC 61 CCTTTCATTC CGGTTCATCT TCTCCATCAC CGGCAGAAGG CGGAAAGTGG AGAACGAAGA 121 TGACTGAAGT CGCGAGCAAC GTTGTACACG AAATCCTAGG CGGACGAGCT CAAGATGTAG 181 ATCAGCCTAT TATCGACTAT ATTATCAATG TCGTCGCCGA TGAAGATTTC GATTTTGGTC 241 ACGACGGTGA AGGTGCTTTT GAAGCCCTTG GAGAGCTACT TGTCGATTCC GGTTGTGTTA 301 CTGACTTCTC CGAATGTCGT GCGGTTTGTA GCAAGTTGTC TGAGAAGTTA GAGAAGCATG 361 AATTGGCTAA ACCCCAACCG ACGGTGAGAA GCTTAAAAAT GCCGCTGAGA ATGTTTGATG 421 GAATGGATGA AGAGGAAGCT CCAAAGAATA AAAAGCCAGA ACCAGTTGAT GGTCCTTTGC 481 TCACAGAACG TGACAAGATT AAGATTGAAA GAAGGAAGAG GAAAGAGGAA CGCCTGAGAG 541 AGGCAGAATA CCAAGAACAC TTGAAAGAAG TGGAGGAAGT GAAAGCTGGT ATGCCTTTAG 601 TGTGTGTGAA TCATGATGGT CAGGGTGATG GACCAACTGT TAAGGATATC CGTATGGAGA 661 ACTTCATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT GGTTCTGTCA CGCTTTCTTT 721 TGGAAGCACT ACGGTCTTAT TGGA Predicted gene structure (within gDNA segment 20436 to 23961): Exon 1 21036 21358 ( 323 n); cDNA 1 323 ( 323 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 324 542 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23179 ( 193 n); cDNA 543 733 ( 191 n); score: 0.990 MATCH C08SLm0006K11.1+ SGN-E315868+ 0.997 735 0.988 C PGS_C08SLm0006K11.1+_SGN-E315868+ (21036 21358,22373 22591,22987 23179) Alignment (genomic DNA sequence = upper lines): AGGATTCTCT CACAGAGCCG CCTCACACTG TACCCGCAAC CCGGTCCACA ACCCATTTTC 21095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTCTCT CACAGAGCCG CCTCACACTG TACCCGCAAC CCGGTCCACA ACCCATTTTC 60 CCTTTCATTC CGGTTCATCT TCTCCATCAC CGGCAGAAGG CGGAAAGTGG AGAACGAAGA 21155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTCATTC CGGTTCATCT TCTCCATCAC CGGCAGAAGG CGGAAAGTGG AGAACGAAGA 120 TGACTGAAGT CGCGAGCAAC GTTGTACACG AAATCCTAGG CGGACGAGCT CAAGATGTAG 21215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTGAAGT CGCGAGCAAC GTTGTACACG AAATCCTAGG CGGACGAGCT CAAGATGTAG 180 ATCAGCCTAT TATCGACTAT ATTATCAATG TCGTCGCCGA TGAAGATTTC GATTTTGGTC 21275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGCCTAT TATCGACTAT ATTATCAATG TCGTCGCCGA TGAAGATTTC GATTTTGGTC 240 ACGACGGTGA AGGTGCTTTT GAAGCCCTTG GAGAGCTACT TGTCGATTCC GGTTGTGTTA 21335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACGGTGA AGGTGCTTTT GAAGCCCTTG GAGAGCTACT TGTCGATTCC GGTTGTGTTA 300 CTGACTTCTC CGAATGTCGT GCGGTATTAA TACTTCCATT CCATGCTCAA TTTCGTTATT 21395 |||||||||| |||||||||| ||| CTGACTTCTC CGAATGTCGT GCG....... .......... .......... .......... 323 GCTTAGGCTG AGTTTCATAT TTTTCTGCTC GAAATTTGTT AGATTGAATT GATTCTGAAA 21455 .......... .......... .......... .......... .......... .......... 323 GATGTGCTTA TTATACTGTT AAGATATTTT TCTGCTCGAA ATTTGTTATA TTGAATTGAT 21515 .......... .......... .......... .......... .......... .......... 323 TCTGAAAGAT GTGCTTATCA TACTGTTAAT AGTTTGGATT GTTGACTAGG AACATAATTT 21575 .......... .......... .......... .......... .......... .......... 323 ACGAACTAAA TAACATTTTT GAAACTTGTG GTCTAAATAA GCCATAGACA TTTGTTTGAC 21635 .......... .......... .......... .......... .......... .......... 323 TACTATCTAT GAGTGGAAAT GAGAACTTTA GAGTTAAATA CTTTTTGGAT ATAGGAAAAC 21695 .......... .......... .......... .......... .......... .......... 323 TACCATTCTT TTTAGTATTT TAAGAGTGAA AAGTGAGAAG TTTAAAGTTG AACCTCCAGG 21755 .......... .......... .......... .......... .......... .......... 323 CATGACCCAA GCTAGTCTAA ACAAGGAGAA GAACACAATT CAAAAGTCTT TTCAAGTTAG 21815 .......... .......... .......... .......... .......... .......... 323 TCTAAACAAG GAGAAGAACA TATTCCAAAA GTCTCTTGCT ACTGTAAACA ACGACAGGTT 21875 .......... .......... .......... .......... .......... .......... 323 TTGATGAATA AAATTTGGAC TTAAAAGTTA AGTGATTATT AGCTTCAGTT TATCATTTAT 21935 .......... .......... .......... .......... .......... .......... 323 GAAGCAAGGA TTGTGTGATT TAGTTAGAGA GCTTATGATG GCCTCAAAAG AAAATCATTT 21995 .......... .......... .......... .......... .......... .......... 323 GTAAGTGAAT TTGGTCTGAA ATAGAGAGTG ACCAACACTG TATTGGACTT AGATGTTGTC 22055 .......... .......... .......... .......... .......... .......... 323 AGTTGAATTG ATTTGGTAAT AGCTCATTTA TGATTAGAGG ACTTGTTAAA CCAGAGAAAT 22115 .......... .......... .......... .......... .......... .......... 323 AAACAGCCAT TTAAGGGGAC ATAGAATTCA AATGGGTGAA TAACTCTCAT CATAGAGCAA 22175 .......... .......... .......... .......... .......... .......... 323 TTTGTGAACT GAAAAGTTGA AGTATAATAT GGCGAACAAA AATACAAGTA ATTTCTTAGT 22235 .......... .......... .......... .......... .......... .......... 323 ACCAGAATTT ATGGTTATAC CAGCATTTAC TATTGTGATT GTTAGACTCC TCTATGTTGG 22295 .......... .......... .......... .......... .......... .......... 323 TCTTTGTTGC ATGCCGTTGT GTTTATACAT TGAGTCGTCT GCAATCTATC TTCAGTAGCA 22355 .......... .......... .......... .......... .......... .......... 323 TTTTCCAACC ATGACAGGTT TGTAGCAAGT TGTCTGAGAA GTTAGAGAAG CATGAATTGG 22415 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTT TGTAGCAAGT TGTCTGAGAA GTTAGAGAAG CATGAATTGG 366 CTAAACCCCA ACCGACGGTG AGAAGCTTAA AAATGCCGCT GAGAATGTTT GATGGAATGG 22475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAACCCCA ACCGACGGTG AGAAGCTTAA AAATGCCGCT GAGAATGTTT GATGGAATGG 426 ATGAAGAGGA AGCTCCAAAG AATAAAAAGC CAGAACCAGT TGATGGTCCT TTGCTCACAG 22535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGAGGA AGCTCCAAAG AATAAAAAGC CAGAACCAGT TGATGGTCCT TTGCTCACAG 486 AACGTGACAA GATTAAGATT GAAAGAAGGA AGAGGAAAGA GGAACGCCTG AGAGAGGTGA 22595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AACGTGACAA GATTAAGATT GAAAGAAGGA AGAGGAAAGA GGAACGCCTG AGAGAG.... 542 GTGAAAAAAT GATAATCTTG ATCGTAATCA GAATGAACCT GTTTGACACA AATATTGGTT 22655 .......... .......... .......... .......... .......... .......... 542 GTTAAATAAA TATGTTGGGA AGACTGCTCT TCTTGTCTAT GAACTACACT GATTTGAGTT 22715 .......... .......... .......... .......... .......... .......... 542 AACACTTCAC TGAGTTTCCA TTTATCATTC TAATGGGGTG TGTATGTGTG TGACATTTCA 22775 .......... .......... .......... .......... .......... .......... 542 AAATACTCCT TTTGTTGGAT AATGGTTGTC TTCGTGAAGT TATGAGACAG AATAAATGTA 22835 .......... .......... .......... .......... .......... .......... 542 ATCACTTTCC TATTACTGCT TTAAAAATTG TAACCGGTAA CCCTCTACTT TCTGCCATGT 22895 .......... .......... .......... .......... .......... .......... 542 TGATGAAAAG AAGAGGGGAA AAAAAAAGAA GAAGATGAAA GTGGCTGGTT TACTCCTTCA 22955 .......... .......... .......... .......... .......... .......... 542 TTCTTTTAAT CTGTATGGCT TGATTCTGCA GGCAGAATAC CAAGAACACT TGAAAGAAGT 23015 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GCAGAATAC CAAGAACACT TGAAAGAAGT 571 GGAGGAAGTG AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG 23075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGAAGTG AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG 631 ACCAACTGTT AAGGATATCC GTATGGAGAA CTTCAATATA TCTGTCGGTG GTCGTGAACT 23135 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ACCAACTGTT AAGGATATCC GTATGGAGAA CTTC-ATATA TCTGTCGGTG GTCGTGAACT 690 TATTGTCGAT GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACG 23179 |||||||||| |||||||||| |||||||||| |||||| ||| |||| TATTGTCGAT GGTTCTGTCA CGCTTTCTTT TGGAAG-CAC TACG 733 hqPGS_C08SLm0006K11.1+_SGN-E315868+ (21036 21358,22373 22591,22987 23179) ******************************************************************************** EST sequence 50 +strand 450 n (File: SGN-E320214+) 1 ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC CATTTTCCCT 61 TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA ACGAAGATGA 121 CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA GATGTAGATC 181 AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT TTTGGTCACG 241 ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGG TGTGTTACTG 301 ACTTCTCCGA ATGGCGTGCG GGTTGTAACA AGTTGTCTGA GAAGTTAGAG AAGCATGAAT 361 TGGCTAAACC CCAACCGACG GTGAGAAGCT TAAAAATGCC GCTGAGAATG GTTGATGGAA 421 TGGATGAAGA AGAAGCTCCC AAGAATAAAA Predicted gene structure (within gDNA segment 20439 to 23292): Exon 1 21039 21358 ( 320 n); cDNA 1 320 ( 320 n); score: 0.994 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 0.96), Pa: 0.920 (s: 0.96) Exon 2 22373 22502 ( 130 n); cDNA 321 450 ( 130 n); score: 0.962 MATCH C08SLm0006K11.1+ SGN-E320214+ 0.984 450 1.000 C PGS_C08SLm0006K11.1+_SGN-E320214+ (21039 21358,22373 22502) Alignment (genomic DNA sequence = upper lines): ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC CATTTTCCCT 21098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCTCAC AGAGCCGCCT CACACTGTAC CCGCAACCCG GTCCACAACC CATTTTCCCT 60 TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA ACGAAGATGA 21158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCCGG TTCATCTTCT CCATCACCGG CAGAAGGCGG AAAGTGGAGA ACGAAGATGA 120 CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA GATGTAGATC 21218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGTCGC GAGCAACGTT GTACACGAAA TCCTAGGCGG ACGAGCTCAA GATGTAGATC 180 AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT TTTGGTCACG 21278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTATTAT CGACTATATT ATCAATGTCG TCGCCGATGA AGATTTCGAT TTTGGTCACG 240 ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGT TGTGTTACTG 21338 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACGGTGAAGG TGCTTTTGAA GCCCTTGGAG AGCTACTTGT CGATTCCGGG TGTGTTACTG 300 ACTTCTCCGA ATGTCGTGCG GTATTAATAC TTCCATTCCA TGCTCAATTT CGTTATTGCT 21398 |||||||||| ||| |||||| ACTTCTCCGA ATGGCGTGCG .......... .......... .......... .......... 320 TAGGCTGAGT TTCATATTTT TCTGCTCGAA ATTTGTTAGA TTGAATTGAT TCTGAAAGAT 21458 .......... .......... .......... .......... .......... .......... 320 GTGCTTATTA TACTGTTAAG ATATTTTTCT GCTCGAAATT TGTTATATTG AATTGATTCT 21518 .......... .......... .......... .......... .......... .......... 320 GAAAGATGTG CTTATCATAC TGTTAATAGT TTGGATTGTT GACTAGGAAC ATAATTTACG 21578 .......... .......... .......... .......... .......... .......... 320 AACTAAATAA CATTTTTGAA ACTTGTGGTC TAAATAAGCC ATAGACATTT GTTTGACTAC 21638 .......... .......... .......... .......... .......... .......... 320 TATCTATGAG TGGAAATGAG AACTTTAGAG TTAAATACTT TTTGGATATA GGAAAACTAC 21698 .......... .......... .......... .......... .......... .......... 320 CATTCTTTTT AGTATTTTAA GAGTGAAAAG TGAGAAGTTT AAAGTTGAAC CTCCAGGCAT 21758 .......... .......... .......... .......... .......... .......... 320 GACCCAAGCT AGTCTAAACA AGGAGAAGAA CACAATTCAA AAGTCTTTTC AAGTTAGTCT 21818 .......... .......... .......... .......... .......... .......... 320 AAACAAGGAG AAGAACATAT TCCAAAAGTC TCTTGCTACT GTAAACAACG ACAGGTTTTG 21878 .......... .......... .......... .......... .......... .......... 320 ATGAATAAAA TTTGGACTTA AAAGTTAAGT GATTATTAGC TTCAGTTTAT CATTTATGAA 21938 .......... .......... .......... .......... .......... .......... 320 GCAAGGATTG TGTGATTTAG TTAGAGAGCT TATGATGGCC TCAAAAGAAA ATCATTTGTA 21998 .......... .......... .......... .......... .......... .......... 320 AGTGAATTTG GTCTGAAATA GAGAGTGACC AACACTGTAT TGGACTTAGA TGTTGTCAGT 22058 .......... .......... .......... .......... .......... .......... 320 TGAATTGATT TGGTAATAGC TCATTTATGA TTAGAGGACT TGTTAAACCA GAGAAATAAA 22118 .......... .......... .......... .......... .......... .......... 320 CAGCCATTTA AGGGGACATA GAATTCAAAT GGGTGAATAA CTCTCATCAT AGAGCAATTT 22178 .......... .......... .......... .......... .......... .......... 320 GTGAACTGAA AAGTTGAAGT ATAATATGGC GAACAAAAAT ACAAGTAATT TCTTAGTACC 22238 .......... .......... .......... .......... .......... .......... 320 AGAATTTATG GTTATACCAG CATTTACTAT TGTGATTGTT AGACTCCTCT ATGTTGGTCT 22298 .......... .......... .......... .......... .......... .......... 320 TTGTTGCATG CCGTTGTGTT TATACATTGA GTCGTCTGCA ATCTATCTTC AGTAGCATTT 22358 .......... .......... .......... .......... .......... .......... 320 TCCAACCATG ACAGGTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT GAATTGGCTA 22418 | |||| | |||||||| |||||||||| |||||||||| |||||||||| .......... ....GGTTGT AACAAGTTGT CTGAGAAGTT AGAGAAGCAT GAATTGGCTA 366 AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT GGAATGGATG 22478 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AACCCCAACC GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGGTTGAT GGAATGGATG 426 AAGAGGAAGC TCCAAAGAAT AAAA 22502 |||| ||||| ||| |||||| |||| AAGAAGAAGC TCCCAAGAAT AAAA 450 hqPGS_C08SLm0006K11.1+_SGN-E320214+ (21039 21358,22373 22502) ******************************************************************************** EST sequence 34 +strand 509 n (File: SGN-E214776+) 1 GCCGATGAAG ATTTCGATTT TGGTCACGAC GGTGAAGGTG CTTTTGAAGC CCTTGGAGAG 61 CTACTTGTCG ATTCCGGTTG TGTTACTGAC TTCTCCGAAT GTCGTGCGGT TTGTAGCAAG 121 TTGTCTGAGA AGTTAGAGAA GCATGAATTG GCTAAACCCC AACCGACGGT GAGAAGCTTA 181 AAAATGCCGC TGAGAATGTT TGATGGAATG GATGAAGAGG AAGCTCCAAA GAATAAAAAG 241 CCAGAACCAG TTGATGGTCC TTTGCTCACA GAACGTGACA AGATTAAGAT TGAAAGAAGG 301 AAGAGGAAAG AGGAACGCCT GAGAGAGGCA GAATACCAAG AACACTTGAA AGAAGTGGAG 361 GAAGTGAAAG CTGGTATGCC TTTAGTGTGG TGTGAATCAT GATGGTCAGG GTGATGGACC 421 AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GTCGGTGGTC GTGAACTTAT 481 TGTCGATGGT TCTGTCACGC TTTCTTTTG Predicted gene structure (within gDNA segment 20651 to 23777): Exon 1 21251 21358 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 109 327 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23167 ( 181 n); cDNA 328 509 ( 182 n); score: 0.986 MATCH C08SLm0006K11.1+ SGN-E214776+ 0.995 508 0.998 C PGS_C08SLm0006K11.1+_SGN-E214776+ (21251 21358,22373 22591,22987 23167) Alignment (genomic DNA sequence = upper lines): GCCGATGAAG ATTTCGATTT TGGTCACGAC GGTGAAGGTG CTTTTGAAGC CCTTGGAGAG 21310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGATGAAG ATTTCGATTT TGGTCACGAC GGTGAAGGTG CTTTTGAAGC CCTTGGAGAG 60 CTACTTGTCG ATTCCGGTTG TGTTACTGAC TTCTCCGAAT GTCGTGCGGT ATTAATACTT 21370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTACTTGTCG ATTCCGGTTG TGTTACTGAC TTCTCCGAAT GTCGTGCG.. .......... 108 CCATTCCATG CTCAATTTCG TTATTGCTTA GGCTGAGTTT CATATTTTTC TGCTCGAAAT 21430 .......... .......... .......... .......... .......... .......... 108 TTGTTAGATT GAATTGATTC TGAAAGATGT GCTTATTATA CTGTTAAGAT ATTTTTCTGC 21490 .......... .......... .......... .......... .......... .......... 108 TCGAAATTTG TTATATTGAA TTGATTCTGA AAGATGTGCT TATCATACTG TTAATAGTTT 21550 .......... .......... .......... .......... .......... .......... 108 GGATTGTTGA CTAGGAACAT AATTTACGAA CTAAATAACA TTTTTGAAAC TTGTGGTCTA 21610 .......... .......... .......... .......... .......... .......... 108 AATAAGCCAT AGACATTTGT TTGACTACTA TCTATGAGTG GAAATGAGAA CTTTAGAGTT 21670 .......... .......... .......... .......... .......... .......... 108 AAATACTTTT TGGATATAGG AAAACTACCA TTCTTTTTAG TATTTTAAGA GTGAAAAGTG 21730 .......... .......... .......... .......... .......... .......... 108 AGAAGTTTAA AGTTGAACCT CCAGGCATGA CCCAAGCTAG TCTAAACAAG GAGAAGAACA 21790 .......... .......... .......... .......... .......... .......... 108 CAATTCAAAA GTCTTTTCAA GTTAGTCTAA ACAAGGAGAA GAACATATTC CAAAAGTCTC 21850 .......... .......... .......... .......... .......... .......... 108 TTGCTACTGT AAACAACGAC AGGTTTTGAT GAATAAAATT TGGACTTAAA AGTTAAGTGA 21910 .......... .......... .......... .......... .......... .......... 108 TTATTAGCTT CAGTTTATCA TTTATGAAGC AAGGATTGTG TGATTTAGTT AGAGAGCTTA 21970 .......... .......... .......... .......... .......... .......... 108 TGATGGCCTC AAAAGAAAAT CATTTGTAAG TGAATTTGGT CTGAAATAGA GAGTGACCAA 22030 .......... .......... .......... .......... .......... .......... 108 CACTGTATTG GACTTAGATG TTGTCAGTTG AATTGATTTG GTAATAGCTC ATTTATGATT 22090 .......... .......... .......... .......... .......... .......... 108 AGAGGACTTG TTAAACCAGA GAAATAAACA GCCATTTAAG GGGACATAGA ATTCAAATGG 22150 .......... .......... .......... .......... .......... .......... 108 GTGAATAACT CTCATCATAG AGCAATTTGT GAACTGAAAA GTTGAAGTAT AATATGGCGA 22210 .......... .......... .......... .......... .......... .......... 108 ACAAAAATAC AAGTAATTTC TTAGTACCAG AATTTATGGT TATACCAGCA TTTACTATTG 22270 .......... .......... .......... .......... .......... .......... 108 TGATTGTTAG ACTCCTCTAT GTTGGTCTTT GTTGCATGCC GTTGTGTTTA TACATTGAGT 22330 .......... .......... .......... .......... .......... .......... 108 CGTCTGCAAT CTATCTTCAG TAGCATTTTC CAACCATGAC AGGTTTGTAG CAAGTTGTCT 22390 |||||||| |||||||||| .......... .......... .......... .......... ..GTTTGTAG CAAGTTGTCT 126 GAGAAGTTAG AGAAGCATGA ATTGGCTAAA CCCCAACCGA CGGTGAGAAG CTTAAAAATG 22450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGTTAG AGAAGCATGA ATTGGCTAAA CCCCAACCGA CGGTGAGAAG CTTAAAAATG 186 CCGCTGAGAA TGTTTGATGG AATGGATGAA GAGGAAGCTC CAAAGAATAA AAAGCCAGAA 22510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCTGAGAA TGTTTGATGG AATGGATGAA GAGGAAGCTC CAAAGAATAA AAAGCCAGAA 246 CCAGTTGATG GTCCTTTGCT CACAGAACGT GACAAGATTA AGATTGAAAG AAGGAAGAGG 22570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTGATG GTCCTTTGCT CACAGAACGT GACAAGATTA AGATTGAAAG AAGGAAGAGG 306 AAAGAGGAAC GCCTGAGAGA GGTGAGTGAA AAAATGATAA TCTTGATCGT AATCAGAATG 22630 |||||||||| |||||||||| | AAAGAGGAAC GCCTGAGAGA G......... .......... .......... .......... 327 AACCTGTTTG ACACAAATAT TGGTTGTTAA ATAAATATGT TGGGAAGACT GCTCTTCTTG 22690 .......... .......... .......... .......... .......... .......... 327 TCTATGAACT ACACTGATTT GAGTTAACAC TTCACTGAGT TTCCATTTAT CATTCTAATG 22750 .......... .......... .......... .......... .......... .......... 327 GGGTGTGTAT GTGTGTGACA TTTCAAAATA CTCCTTTTGT TGGATAATGG TTGTCTTCGT 22810 .......... .......... .......... .......... .......... .......... 327 GAAGTTATGA GACAGAATAA ATGTAATCAC TTTCCTATTA CTGCTTTAAA AATTGTAACC 22870 .......... .......... .......... .......... .......... .......... 327 GGTAACCCTC TACTTTCTGC CATGTTGATG AAAAGAAGAG GGGAAAAAAA AAGAAGAAGA 22930 .......... .......... .......... .......... .......... .......... 327 TGAAAGTGGC TGGTTTACTC CTTCATTCTT TTAATCTGTA TGGCTTGATT CTGCAGGCAG 22990 |||| .......... .......... .......... .......... .......... ......GCAG 331 AATACCAAGA ACACTTGAAA GAAGTGGAGG AAGTGAAAGC TGGTATGCCT TTAGTGT-GT 23049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AATACCAAGA ACACTTGAAA GAAGTGGAGG AAGTGAAAGC TGGTATGCCT TTAGTGTGGT 391 GTGAATCATG ATGGTCAGGG TGATGGACCA ACTGTTAAGG ATATCCGTAT GGAGAACTTC 23109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATCATG ATGGTCAGGG TGATGGACCA ACTGTTAAGG ATATCCGTAT GGAGAACTTC 451 AATATATCTG TCGGTGGTCG TGAACTTATT GTCGATGGTT CTGTCACGCT TTCTTTTG 23167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATATATCTG TCGGTGGTCG TGAACTTATT GTCGATGGTT CTGTCACGCT TTCTTTTG 509 hqPGS_C08SLm0006K11.1+_SGN-E214776+ (21251 21358,22373 22591,22987 23167) ******************************************************************************** EST sequence 28 +strand 539 n (File: SGN-E203785+) 1 GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG GTGATGGACC 61 AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GTCGGTGGTC GTGAACTTAT 121 TGTCGATGGT TCTGTCACGC TTTCTTTTGG AAGACACTAC GGTCTTATTG GAAGAAACGG 181 TACAGGGAAA ACAACTCTCC TGAGGCATAT GGCTATGCAC GCTATTGATG GTATTCCCAG 241 GAACTGCCAG ATATTGCATG TTGAGCAAGA AGTGGTTGGT GATAATACCT CAGTTTTGCA 301 ATGTATTCTT AACACTGATA TGGAGAGAAC CCAACTTCTG GAAGAAGAGG CTCGTCTGCT 361 TGAATTACAG AGAGTGACCG ACTTAGAAGG CGAATCTGCA AAGAGTGATA AGTTGAATGG 421 AGGTATCGAC AAAAATTCGC AAGCAAAAAG GCTTGAAGAG ATATACAAAA GACTTGATTT 481 CATTGATGCT TACTCGGCTG AGTCACGTGC AGCAACTATA CTATCGGGTT TGAGCTTCT Predicted gene structure (within gDNA segment 22419 to 25499): Exon 1 23019 23179 ( 161 n); cDNA 1 161 ( 161 n); score: 1.000 Intron 1 23180 24277 (1098 n); Pd: 0.965 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 24278 24486 ( 209 n); cDNA 162 370 ( 209 n); score: 1.000 Intron 2 24487 24612 ( 126 n); Pd: 0.999 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 24613 24768 ( 156 n); cDNA 371 526 ( 156 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E203785+ 1.000 526 0.976 C PGS_C08SLm0006K11.1+_SGN-E203785+ (23019 23179,24278 24486,24613 24768) Alignment (genomic DNA sequence = upper lines): GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG GTGATGGACC 23078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTGAAA GCTGGTATGC CTTTAGTGTG TGTGAATCAT GATGGTCAGG GTGATGGACC 60 AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GTCGGTGGTC GTGAACTTAT 23138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGTTAAG GATATCCGTA TGGAGAACTT CAATATATCT GTCGGTGGTC GTGAACTTAT 120 TGTCGATGGT TCTGTCACGC TTTCTTTTGG AAGACACTAC GGTATGCTTG ATTATCTTAT 23198 |||||||||| |||||||||| |||||||||| |||||||||| | TGTCGATGGT TCTGTCACGC TTTCTTTTGG AAGACACTAC G......... .......... 161 TGAAAAATAA ATGAAAACTC ATTCCTATGT ACTTTGATTT TGCATTTTCT TAGACCTTTT 23258 .......... .......... .......... .......... .......... .......... 161 AGTATCAAGT AGTTTGTATC TCATCGATAT GGTATTACTC CCTCCTTGCT GATAAGAACT 23318 .......... .......... .......... .......... .......... .......... 161 ACCCACTTTT GCAGAGTCAA ATCATGAGTA CATGACATCT ATCAACATGT TAGTATATAG 23378 .......... .......... .......... .......... .......... .......... 161 AAATAATTCG ATTTCTGTTT AAATTGATAA AGCTTATCTA AAAGAAAGTT AAAAATAGTA 23438 .......... .......... .......... .......... .......... .......... 161 GTTTGGAATT TGAGAAGTTG GGATGTTAGT CGAAAATTCA CATCAGATTG GATACAATAC 23498 .......... .......... .......... .......... .......... .......... 161 GAGATTGACC CAGTTTATAT TCATTCATTT AGAAGTGTTG GGGAGAAAAA ATTTCCATCA 23558 .......... .......... .......... .......... .......... .......... 161 AGGGGAGAAG TCAAGAATAT TGGGTTGGGC TAAAAGGAAA ACATGCCATT TATCAGAGGG 23618 .......... .......... .......... .......... .......... .......... 161 TGCGAGTGTC TATCTATCTT GATAAGCATT TAGGGGTCAT TTGGTAGGAT GTATTACATC 23678 .......... .......... .......... .......... .......... .......... 161 TCTAATACAT GTACTAGTCA TGGTATTATT TAATCCTTTA TTTGATAGGA TTTTCAGCCT 23738 .......... .......... .......... .......... .......... .......... 161 GTGTATAACT AATCTATTAG CTATACACCC TATTCAGTAT TATAAGTTGT ATAACTAAGA 23798 .......... .......... .......... .......... .......... .......... 161 CATAGCAAAT TATGGTATTA GCAATATGAG GGCTATTAAT ACATGGATAA GCATGGTAAA 23858 .......... .......... .......... .......... .......... .......... 161 AGACATAGTT GCCCTTAATA AACCGAACCA AACAGTGGAT AAGAGATAAT CTCCGTGTTA 23918 .......... .......... .......... .......... .......... .......... 161 TCAATCCTAG TATTACTAAT ACATTCCATT AATCTACTCA GTGCTATTCT TATATACTCT 23978 .......... .......... .......... .......... .......... .......... 161 ACCAAACGAC CCCTTAATGT CTTAAACAAG TAAGTCATCA TGCACACATC CATTATTTTG 24038 .......... .......... .......... .......... .......... .......... 161 TCACTGGGAA GAAGACTGGA ATACATGAAT TGGCATAAAT GCAAAGGGGG TGAAACTTGG 24098 .......... .......... .......... .......... .......... .......... 161 GGGAACATAT TTCGTCAAAC AACAACATAG GCTATAGCCA GTGTATATTG GCATTTTTTG 24158 .......... .......... .......... .......... .......... .......... 161 CTGTTTATTT ATTAATTAAA TTGATGACTT TCTCAAAAAA AAAAACATAG CCTATAGCCA 24218 .......... .......... .......... .......... .......... .......... 161 GCGGCGTAGT TATGTTTTAT GAATCCACGG CCTTACCTAA ATCTCTAATT TGGATGCAGG 24278 | .......... .......... .......... .......... .......... .........G 162 TCTTATTGGA AGAAACGGTA CAGGGAAAAC AACTCTCCTG AGGCATATGG CTATGCACGC 24338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATTGGA AGAAACGGTA CAGGGAAAAC AACTCTCCTG AGGCATATGG CTATGCACGC 222 TATTGATGGT ATTCCCAGGA ACTGCCAGAT ATTGCATGTT GAGCAAGAAG TGGTTGGTGA 24398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGATGGT ATTCCCAGGA ACTGCCAGAT ATTGCATGTT GAGCAAGAAG TGGTTGGTGA 282 TAATACCTCA GTTTTGCAAT GTATTCTTAA CACTGATATG GAGAGAACCC AACTTCTGGA 24458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATACCTCA GTTTTGCAAT GTATTCTTAA CACTGATATG GAGAGAACCC AACTTCTGGA 342 AGAAGAGGCT CGTCTGCTTG AATTACAGGT TAGAAACAGA TCAATGGCTA AGCTTTTATG 24518 |||||||||| |||||||||| |||||||| AGAAGAGGCT CGTCTGCTTG AATTACAG.. .......... .......... .......... 370 TCATATTATA CTGTTTATTT TTAATATACC TTCGTATTTT GTTCTCATTG GATCAAGTAT 24578 .......... .......... .......... .......... .......... .......... 370 ATTCCCATTC CTTGGCATTT TCATGATTTT CTAGAGAGTG ACCGACTTAG AAGGCGAATC 24638 |||||| |||||||||| |||||||||| .......... .......... .......... ....AGAGTG ACCGACTTAG AAGGCGAATC 396 TGCAAAGAGT GATAAGTTGA ATGGAGGTAT CGACAAAAAT TCGCAAGCAA AAAGGCTTGA 24698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAAGAGT GATAAGTTGA ATGGAGGTAT CGACAAAAAT TCGCAAGCAA AAAGGCTTGA 456 AGAGATATAC AAAAGACTTG ATTTCATTGA TGCTTACTCG GCTGAGTCAC GTGCAGCAAC 24758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATATAC AAAAGACTTG ATTTCATTGA TGCTTACTCG GCTGAGTCAC GTGCAGCAAC 516 TATACTATCG 24768 |||||||||| TATACTATCG 526 hqPGS_C08SLm0006K11.1+_SGN-E203785+ (23019 23179,24278 24486,24613 24768) ******************************************************************************** EST sequence 22 +strand 697 n (File: SGN-E372510+) 1 AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 61 AAGGATATCC GTATGGACAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 121 GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACGGTCTTA TTGGAAGAAA CGGTACAGGG 181 AAAACAACTC TCCTGAGGCA TATGGCTATG CACGCTATTG ATGGTATTCC CAGGAACTGC 241 CAGATATTGC ATGTTGAGCA AGAAGTGGTT GGTGATAATA CCTCAGTTTT GCAATGTATT 301 CTTAACACTG ATATGGAGAG AACCCAACTT CTGGAAGAAG AGGCTCGTCT GCTTGAATTA 361 CAGAGAGTGA CCGACTTAGA AGGCGAATCT GCAAAGAGTG ATAAGTTGAA TGGAGGTATC 421 GACAAAAATT CGCAAGCAAA AAGGCTTGAA GAGATATACA AAAGACTTGA TTTCATTGAT 481 GCTTACTCGG CTGAGTCACG TGCAGCAACT ATACTATCGG GTTTGAGCTT CTCTCCAGAA 541 ATGCAAAAGA GAGCAACCAA AACATTTTCT GGAGGATGGA GAATGAGAAT CGCTCTTGCT 601 CGGGCATTGT TCATTGAACC TGATCTATTG TTGCTTGATG AACCCACGAA TCATCTTGAT 661 CTGCATGCTG TCTTATGGCT GGAAAGTTAC CTGGTGA Predicted gene structure (within gDNA segment 22426 to 26466): Exon 1 23026 23179 ( 154 n); cDNA 1 154 ( 154 n); score: 0.994 Intron 1 23180 24277 (1098 n); Pd: 0.965 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 24278 24486 ( 209 n); cDNA 155 363 ( 209 n); score: 1.000 Intron 2 24487 24612 ( 126 n); Pd: 0.999 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 24613 24768 ( 156 n); cDNA 364 519 ( 156 n); score: 1.000 Intron 3 24769 25571 ( 803 n); Pd: 0.870 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 25572 25700 ( 129 n); cDNA 520 648 ( 129 n); score: 1.000 Intron 4 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 25808 25856 ( 49 n); cDNA 649 697 ( 49 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E372510+ 0.998 697 1.000 C PGS_C08SLm0006K11.1+_SGN-E372510+ (23026 23179,24278 24486,24613 24768,25572 25700,25808 25856) Alignment (genomic DNA sequence = upper lines): AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 23085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 60 AAGGATATCC GTATGGAGAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 23145 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AAGGATATCC GTATGGACAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 120 GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACGGTATGC TTGATTATCT TATTGAAAAA 23205 |||||||||| |||||||||| |||||||||| |||| GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACG...... .......... .......... 154 TAAATGAAAA CTCATTCCTA TGTACTTTGA TTTTGCATTT TCTTAGACCT TTTAGTATCA 23265 .......... .......... .......... .......... .......... .......... 154 AGTAGTTTGT ATCTCATCGA TATGGTATTA CTCCCTCCTT GCTGATAAGA ACTACCCACT 23325 .......... .......... .......... .......... .......... .......... 154 TTTGCAGAGT CAAATCATGA GTACATGACA TCTATCAACA TGTTAGTATA TAGAAATAAT 23385 .......... .......... .......... .......... .......... .......... 154 TCGATTTCTG TTTAAATTGA TAAAGCTTAT CTAAAAGAAA GTTAAAAATA GTAGTTTGGA 23445 .......... .......... .......... .......... .......... .......... 154 ATTTGAGAAG TTGGGATGTT AGTCGAAAAT TCACATCAGA TTGGATACAA TACGAGATTG 23505 .......... .......... .......... .......... .......... .......... 154 ACCCAGTTTA TATTCATTCA TTTAGAAGTG TTGGGGAGAA AAAATTTCCA TCAAGGGGAG 23565 .......... .......... .......... .......... .......... .......... 154 AAGTCAAGAA TATTGGGTTG GGCTAAAAGG AAAACATGCC ATTTATCAGA GGGTGCGAGT 23625 .......... .......... .......... .......... .......... .......... 154 GTCTATCTAT CTTGATAAGC ATTTAGGGGT CATTTGGTAG GATGTATTAC ATCTCTAATA 23685 .......... .......... .......... .......... .......... .......... 154 CATGTACTAG TCATGGTATT ATTTAATCCT TTATTTGATA GGATTTTCAG CCTGTGTATA 23745 .......... .......... .......... .......... .......... .......... 154 ACTAATCTAT TAGCTATACA CCCTATTCAG TATTATAAGT TGTATAACTA AGACATAGCA 23805 .......... .......... .......... .......... .......... .......... 154 AATTATGGTA TTAGCAATAT GAGGGCTATT AATACATGGA TAAGCATGGT AAAAGACATA 23865 .......... .......... .......... .......... .......... .......... 154 GTTGCCCTTA ATAAACCGAA CCAAACAGTG GATAAGAGAT AATCTCCGTG TTATCAATCC 23925 .......... .......... .......... .......... .......... .......... 154 TAGTATTACT AATACATTCC ATTAATCTAC TCAGTGCTAT TCTTATATAC TCTACCAAAC 23985 .......... .......... .......... .......... .......... .......... 154 GACCCCTTAA TGTCTTAAAC AAGTAAGTCA TCATGCACAC ATCCATTATT TTGTCACTGG 24045 .......... .......... .......... .......... .......... .......... 154 GAAGAAGACT GGAATACATG AATTGGCATA AATGCAAAGG GGGTGAAACT TGGGGGAACA 24105 .......... .......... .......... .......... .......... .......... 154 TATTTCGTCA AACAACAACA TAGGCTATAG CCAGTGTATA TTGGCATTTT TTGCTGTTTA 24165 .......... .......... .......... .......... .......... .......... 154 TTTATTAATT AAATTGATGA CTTTCTCAAA AAAAAAAACA TAGCCTATAG CCAGCGGCGT 24225 .......... .......... .......... .......... .......... .......... 154 AGTTATGTTT TATGAATCCA CGGCCTTACC TAAATCTCTA ATTTGGATGC AGGTCTTATT 24285 |||||||| .......... .......... .......... .......... .......... ..GTCTTATT 162 GGAAGAAACG GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT 24345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGAAACG GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT 222 GGTATTCCCA GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC 24405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTCCCA GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC 282 TCAGTTTTGC AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG 24465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTTTGC AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG 342 GCTCGTCTGC TTGAATTACA GGTTAGAAAC AGATCAATGG CTAAGCTTTT ATGTCATATT 24525 |||||||||| |||||||||| | GCTCGTCTGC TTGAATTACA G......... .......... .......... .......... 363 ATACTGTTTA TTTTTAATAT ACCTTCGTAT TTTGTTCTCA TTGGATCAAG TATATTCCCA 24585 .......... .......... .......... .......... .......... .......... 363 TTCCTTGGCA TTTTCATGAT TTTCTAGAGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG 24645 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG 396 AGTGATAAGT TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA 24705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGATAAGT TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA 456 TACAAAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA 24765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA 516 TCGGTTAGTT TGACTTTGAC TAGTAATCCG ATTTGCAAGC TTATGATGAC ATCAGTCTCT 24825 ||| TCG....... .......... .......... .......... .......... .......... 519 CTGTAACTGT TGAGAAAGTT TGTTCACTTT ATATATCTTC TTGATGCTCT TTTTACTGAA 24885 .......... .......... .......... .......... .......... .......... 519 ACCACTTTCT TCATAAAAAT AAAGTTTATT CACTTTATAC ACTATGTTTA ACTAAAACAG 24945 .......... .......... .......... .......... .......... .......... 519 AGTTTGCATT TGATTTATAA TATCGCACAC AAATGCTGTA CGTTAGAGTT TAATTTATAA 25005 .......... .......... .......... .......... .......... .......... 519 TGTATGAGCA AGATTCAGTC TACTAATTCA TGTACCTGGG ATGCCTGTTC CTTTCCTTCT 25065 .......... .......... .......... .......... .......... .......... 519 GTTTCTACCA TGATTATGCT TCCGCCTACT TTGTCTTAGG AATGTGTTTT GGATATGGCT 25125 .......... .......... .......... .......... .......... .......... 519 TGAAAGTATG GAAGCTAGTC TCAAGCTAAT CTTGCTGTTT TTGCCTCTTC TTAGAGTTTG 25185 .......... .......... .......... .......... .......... .......... 519 AGTTGTCTAA GCTTCTGTCC TAACTTCATG TTATCCGAAC TATCTTGCTG TTTTGGCCTC 25245 .......... .......... .......... .......... .......... .......... 519 TCCTTGGAGT TTAAGTTGTA TGTTGAGATT ATTTCCCTTA TAATTTAATG TTGTCTTGTC 25305 .......... .......... .......... .......... .......... .......... 519 GTTTTAAGCT GTGGATCTGT GTACTAACAT CTTAAATAGG AAGTTTTGAA TGGGGGAATA 25365 .......... .......... .......... .......... .......... .......... 519 TGCTAGAAGT TAATCTATCT CTGGCAATTG AAAGTTAGAA CTCCTTTATT TAAGAGGCTG 25425 .......... .......... .......... .......... .......... .......... 519 GGTTTTATTC TGCTGTAGTT TTGGCGTTCT TCAAGTTGGA TGCTTGTCCA CCTCAATTTT 25485 .......... .......... .......... .......... .......... .......... 519 TCTTATGATG TTTTGCCTAT TGATCATTTG TGTTCACACC ATTTGTAATG TATAGTCTAG 25545 .......... .......... .......... .......... .......... .......... 519 TTCTCATTGG TGGCTATTAC TTCCAGGGTT TGAGCTTCTC TCCAGAAATG CAAAAGAGAG 25605 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGTT TGAGCTTCTC TCCAGAAATG CAAAAGAGAG 553 CAACCAAAAC ATTTTCTGGA GGATGGAGAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA 25665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAAAAC ATTTTCTGGA GGATGGAGAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA 613 TTGAACCTGA TCTATTGTTG CTTGATGAAC CCACGGTGTG TTATTTCTTC TCGAGGATGT 25725 |||||||||| |||||||||| |||||||||| ||||| TTGAACCTGA TCTATTGTTG CTTGATGAAC CCACG..... .......... .......... 648 AGATGTACAG CTATTCAAAT AATGAACTTC TGTTTTCTTT TGCATGAAGA AATCATAGAA 25785 .......... .......... .......... .......... .......... .......... 648 CTTATGTTTT CCTTCCTTGC AGAATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG 25845 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG 686 TTACCTGGTG A 25856 |||||||||| | TTACCTGGTG A 697 hqPGS_C08SLm0006K11.1+_SGN-E372510+ (23026 23179,24278 24486,24613 24768,25572 25700,25808 25856) ******************************************************************************** EST sequence 81 +strand 531 n (File: SGN-E294168+) 1 AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 61 AAGGATATCC GTATGGACAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 121 GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACGGTCTTA TTGGAAGAAA CGGTACAGGG 181 AAAACAACTC TCCTGAGGCA TATGGCTATG CACGCTATTG ATGGTATTCC CAGGAACTGC 241 CAGATATTGC ATGTTGAGCA AGAAGTGGTT GGTGATAATA CCTCAGTTTT GCAATGTATT 301 CTTAACACTG ATATGGAGAG AACCCAACTT CTGGAAGAAG AGGCTCGTCT GCTTGAATTA 361 CAGAGAGTGA CCGACTTAGA AGGCGAATCT GCAAAGAGTG ATAAGTTGAA TGGAGGTATC 421 GACAAAAATT CGCAAGCAAA AAGGCTTGAA GAGATATACA AAAGACTTGA TTTCATTGAT 481 GCTTACTCGG CTGAGTCACG TGCAGCAACT ATACTATCGG GTTTGAGCTT C Predicted gene structure (within gDNA segment 22426 to 25489): Exon 1 23026 23179 ( 154 n); cDNA 1 154 ( 154 n); score: 0.994 Intron 1 23180 24277 (1098 n); Pd: 0.965 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 24278 24486 ( 209 n); cDNA 155 363 ( 209 n); score: 1.000 Intron 2 24487 24612 ( 126 n); Pd: 0.999 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 24613 24768 ( 156 n); cDNA 364 519 ( 156 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E294168+ 0.998 519 0.977 C PGS_C08SLm0006K11.1+_SGN-E294168+ (23026 23179,24278 24486,24613 24768) Alignment (genomic DNA sequence = upper lines): AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 23085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGGTA TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT 60 AAGGATATCC GTATGGAGAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 23145 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AAGGATATCC GTATGGACAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT 120 GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACGGTATGC TTGATTATCT TATTGAAAAA 23205 |||||||||| |||||||||| |||||||||| |||| GGTTCTGTCA CGCTTTCTTT TGGAAGACAC TACG...... .......... .......... 154 TAAATGAAAA CTCATTCCTA TGTACTTTGA TTTTGCATTT TCTTAGACCT TTTAGTATCA 23265 .......... .......... .......... .......... .......... .......... 154 AGTAGTTTGT ATCTCATCGA TATGGTATTA CTCCCTCCTT GCTGATAAGA ACTACCCACT 23325 .......... .......... .......... .......... .......... .......... 154 TTTGCAGAGT CAAATCATGA GTACATGACA TCTATCAACA TGTTAGTATA TAGAAATAAT 23385 .......... .......... .......... .......... .......... .......... 154 TCGATTTCTG TTTAAATTGA TAAAGCTTAT CTAAAAGAAA GTTAAAAATA GTAGTTTGGA 23445 .......... .......... .......... .......... .......... .......... 154 ATTTGAGAAG TTGGGATGTT AGTCGAAAAT TCACATCAGA TTGGATACAA TACGAGATTG 23505 .......... .......... .......... .......... .......... .......... 154 ACCCAGTTTA TATTCATTCA TTTAGAAGTG TTGGGGAGAA AAAATTTCCA TCAAGGGGAG 23565 .......... .......... .......... .......... .......... .......... 154 AAGTCAAGAA TATTGGGTTG GGCTAAAAGG AAAACATGCC ATTTATCAGA GGGTGCGAGT 23625 .......... .......... .......... .......... .......... .......... 154 GTCTATCTAT CTTGATAAGC ATTTAGGGGT CATTTGGTAG GATGTATTAC ATCTCTAATA 23685 .......... .......... .......... .......... .......... .......... 154 CATGTACTAG TCATGGTATT ATTTAATCCT TTATTTGATA GGATTTTCAG CCTGTGTATA 23745 .......... .......... .......... .......... .......... .......... 154 ACTAATCTAT TAGCTATACA CCCTATTCAG TATTATAAGT TGTATAACTA AGACATAGCA 23805 .......... .......... .......... .......... .......... .......... 154 AATTATGGTA TTAGCAATAT GAGGGCTATT AATACATGGA TAAGCATGGT AAAAGACATA 23865 .......... .......... .......... .......... .......... .......... 154 GTTGCCCTTA ATAAACCGAA CCAAACAGTG GATAAGAGAT AATCTCCGTG TTATCAATCC 23925 .......... .......... .......... .......... .......... .......... 154 TAGTATTACT AATACATTCC ATTAATCTAC TCAGTGCTAT TCTTATATAC TCTACCAAAC 23985 .......... .......... .......... .......... .......... .......... 154 GACCCCTTAA TGTCTTAAAC AAGTAAGTCA TCATGCACAC ATCCATTATT TTGTCACTGG 24045 .......... .......... .......... .......... .......... .......... 154 GAAGAAGACT GGAATACATG AATTGGCATA AATGCAAAGG GGGTGAAACT TGGGGGAACA 24105 .......... .......... .......... .......... .......... .......... 154 TATTTCGTCA AACAACAACA TAGGCTATAG CCAGTGTATA TTGGCATTTT TTGCTGTTTA 24165 .......... .......... .......... .......... .......... .......... 154 TTTATTAATT AAATTGATGA CTTTCTCAAA AAAAAAAACA TAGCCTATAG CCAGCGGCGT 24225 .......... .......... .......... .......... .......... .......... 154 AGTTATGTTT TATGAATCCA CGGCCTTACC TAAATCTCTA ATTTGGATGC AGGTCTTATT 24285 |||||||| .......... .......... .......... .......... .......... ..GTCTTATT 162 GGAAGAAACG GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT 24345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGAAACG GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT 222 GGTATTCCCA GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC 24405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTCCCA GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC 282 TCAGTTTTGC AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG 24465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTTTGC AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG 342 GCTCGTCTGC TTGAATTACA GGTTAGAAAC AGATCAATGG CTAAGCTTTT ATGTCATATT 24525 |||||||||| |||||||||| | GCTCGTCTGC TTGAATTACA G......... .......... .......... .......... 363 ATACTGTTTA TTTTTAATAT ACCTTCGTAT TTTGTTCTCA TTGGATCAAG TATATTCCCA 24585 .......... .......... .......... .......... .......... .......... 363 TTCCTTGGCA TTTTCATGAT TTTCTAGAGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG 24645 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG 396 AGTGATAAGT TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA 24705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGATAAGT TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA 456 TACAAAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA 24765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA 516 TCG 24768 ||| TCG 519 hqPGS_C08SLm0006K11.1+_SGN-E294168+ (23026 23179,24278 24486,24613 24768) ******************************************************************************** EST sequence 61 +strand 564 n (File: SGN-E298025+) 1 AACTGCCAGA TATTGCATGT TGAGCAAGAA GTGGTTGGTG ATAATACCTC AGTTTTGCAA 61 TGTATTCTTA ACACTGATAT GGAGAGAACC CAACTTCTGG AAGAAGAGGC TCGTCTGCTT 121 GAATTACAGA GAGTGACCGA CTTAGAAGGC GAATCTGCAA AGAGTGATAA GTTGAATGGA 181 GGTATCGACA AAAATTCGCA AGCAAAAAGG CTTGAAGAGA TATACAAAAG ACTTGATTTC 241 ATTGATGCTT ACTCGGCTGA GTCACGTGCA GCAACTATAC TATCGGGTTT GAGCTTCTCT 301 CCAGAAATGC AAAAGAGAGC AACCAAAACA TTTTCTGGAG GATGGAGAAT GAGAATCGCT 361 CTTGCTCGGG CATTGTTCAT TGAACCTGAT CTATTGTTGC TTGATGAACC CACGAATCAT 421 CTTGATCTGC ATGCTGTCTT ATGGCTGGAA AGTTACCTGG TGAAGTGGCC GAAGACATTT 481 ATAGTTGTGT CTCATGCTAG AGAGTTCTTG AATTCTGTAG TCACAGATAT CATCCATCTA 541 CAAAATCAGA AATTGAGCAC CTTT Predicted gene structure (within gDNA segment 23758 to 26665): Exon 1 24358 24486 ( 129 n); cDNA 1 129 ( 129 n); score: 1.000 Intron 1 24487 24612 ( 126 n); Pd: 0.999 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 2 24613 24768 ( 156 n); cDNA 130 285 ( 156 n); score: 1.000 Intron 2 24769 25571 ( 803 n); Pd: 0.870 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 25572 25700 ( 129 n); cDNA 286 414 ( 129 n); score: 1.000 Intron 3 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 25808 25909 ( 102 n); cDNA 415 516 ( 102 n); score: 1.000 Intron 4 25910 26007 ( 98 n); Pd: 0.957 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 26008 26055 ( 48 n); cDNA 517 564 ( 48 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E298025+ 1.000 564 1.000 C PGS_C08SLm0006K11.1+_SGN-E298025+ (24358 24486,24613 24768,25572 25700,25808 25909,26008 26055) Alignment (genomic DNA sequence = upper lines): AACTGCCAGA TATTGCATGT TGAGCAAGAA GTGGTTGGTG ATAATACCTC AGTTTTGCAA 24417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCCAGA TATTGCATGT TGAGCAAGAA GTGGTTGGTG ATAATACCTC AGTTTTGCAA 60 TGTATTCTTA ACACTGATAT GGAGAGAACC CAACTTCTGG AAGAAGAGGC TCGTCTGCTT 24477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATTCTTA ACACTGATAT GGAGAGAACC CAACTTCTGG AAGAAGAGGC TCGTCTGCTT 120 GAATTACAGG TTAGAAACAG ATCAATGGCT AAGCTTTTAT GTCATATTAT ACTGTTTATT 24537 ||||||||| GAATTACAG. .......... .......... .......... .......... .......... 129 TTTAATATAC CTTCGTATTT TGTTCTCATT GGATCAAGTA TATTCCCATT CCTTGGCATT 24597 .......... .......... .......... .......... .......... .......... 129 TTCATGATTT TCTAGAGAGT GACCGACTTA GAAGGCGAAT CTGCAAAGAG TGATAAGTTG 24657 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....AGAGT GACCGACTTA GAAGGCGAAT CTGCAAAGAG TGATAAGTTG 174 AATGGAGGTA TCGACAAAAA TTCGCAAGCA AAAAGGCTTG AAGAGATATA CAAAAGACTT 24717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGAGGTA TCGACAAAAA TTCGCAAGCA AAAAGGCTTG AAGAGATATA CAAAAGACTT 234 GATTTCATTG ATGCTTACTC GGCTGAGTCA CGTGCAGCAA CTATACTATC GGTTAGTTTG 24777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GATTTCATTG ATGCTTACTC GGCTGAGTCA CGTGCAGCAA CTATACTATC G......... 285 ACTTTGACTA GTAATCCGAT TTGCAAGCTT ATGATGACAT CAGTCTCTCT GTAACTGTTG 24837 .......... .......... .......... .......... .......... .......... 285 AGAAAGTTTG TTCACTTTAT ATATCTTCTT GATGCTCTTT TTACTGAAAC CACTTTCTTC 24897 .......... .......... .......... .......... .......... .......... 285 ATAAAAATAA AGTTTATTCA CTTTATACAC TATGTTTAAC TAAAACAGAG TTTGCATTTG 24957 .......... .......... .......... .......... .......... .......... 285 ATTTATAATA TCGCACACAA ATGCTGTACG TTAGAGTTTA ATTTATAATG TATGAGCAAG 25017 .......... .......... .......... .......... .......... .......... 285 ATTCAGTCTA CTAATTCATG TACCTGGGAT GCCTGTTCCT TTCCTTCTGT TTCTACCATG 25077 .......... .......... .......... .......... .......... .......... 285 ATTATGCTTC CGCCTACTTT GTCTTAGGAA TGTGTTTTGG ATATGGCTTG AAAGTATGGA 25137 .......... .......... .......... .......... .......... .......... 285 AGCTAGTCTC AAGCTAATCT TGCTGTTTTT GCCTCTTCTT AGAGTTTGAG TTGTCTAAGC 25197 .......... .......... .......... .......... .......... .......... 285 TTCTGTCCTA ACTTCATGTT ATCCGAACTA TCTTGCTGTT TTGGCCTCTC CTTGGAGTTT 25257 .......... .......... .......... .......... .......... .......... 285 AAGTTGTATG TTGAGATTAT TTCCCTTATA ATTTAATGTT GTCTTGTCGT TTTAAGCTGT 25317 .......... .......... .......... .......... .......... .......... 285 GGATCTGTGT ACTAACATCT TAAATAGGAA GTTTTGAATG GGGGAATATG CTAGAAGTTA 25377 .......... .......... .......... .......... .......... .......... 285 ATCTATCTCT GGCAATTGAA AGTTAGAACT CCTTTATTTA AGAGGCTGGG TTTTATTCTG 25437 .......... .......... .......... .......... .......... .......... 285 CTGTAGTTTT GGCGTTCTTC AAGTTGGATG CTTGTCCACC TCAATTTTTC TTATGATGTT 25497 .......... .......... .......... .......... .......... .......... 285 TTGCCTATTG ATCATTTGTG TTCACACCAT TTGTAATGTA TAGTCTAGTT CTCATTGGTG 25557 .......... .......... .......... .......... .......... .......... 285 GCTATTACTT CCAGGGTTTG AGCTTCTCTC CAGAAATGCA AAAGAGAGCA ACCAAAACAT 25617 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGTTTG AGCTTCTCTC CAGAAATGCA AAAGAGAGCA ACCAAAACAT 331 TTTCTGGAGG ATGGAGAATG AGAATCGCTC TTGCTCGGGC ATTGTTCATT GAACCTGATC 25677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTGGAGG ATGGAGAATG AGAATCGCTC TTGCTCGGGC ATTGTTCATT GAACCTGATC 391 TATTGTTGCT TGATGAACCC ACGGTGTGTT ATTTCTTCTC GAGGATGTAG ATGTACAGCT 25737 |||||||||| |||||||||| ||| TATTGTTGCT TGATGAACCC ACG....... .......... .......... .......... 414 ATTCAAATAA TGAACTTCTG TTTTCTTTTG CATGAAGAAA TCATAGAACT TATGTTTTCC 25797 .......... .......... .......... .......... .......... .......... 414 TTCCTTGCAG AATCATCTTG ATCTGCATGC TGTCTTATGG CTGGAAAGTT ACCTGGTGAA 25857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AATCATCTTG ATCTGCATGC TGTCTTATGG CTGGAAAGTT ACCTGGTGAA 464 GTGGCCGAAG ACATTTATAG TTGTGTCTCA TGCTAGAGAG TTCTTGAATT CTGTACGTCC 25917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTGGCCGAAG ACATTTATAG TTGTGTCTCA TGCTAGAGAG TTCTTGAATT CT........ 516 TTTCTTCTCT TTGACCTAAA ACAATAGTTG GGTTCAGTAT GTTGATGTTT GTTTGACATC 25977 .......... .......... .......... .......... .......... .......... 516 TCATAAACCT ATCTTTGCTT CTTTCTTCAG GTAGTCACAG ATATCATCCA TCTACAAAAT 26037 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTAGTCACAG ATATCATCCA TCTACAAAAT 546 CAGAAATTGA GCACCTTT 26055 |||||||||| |||||||| CAGAAATTGA GCACCTTT 564 hqPGS_C08SLm0006K11.1+_SGN-E298025+ (24358 24486,24613 24768,25572 25700,25808 25909,26008 26055) ******************************************************************************** EST sequence 78 +strand 408 n (File: SGN-E301396+) 1 TACCTCACTT TTGCAATGTA TTCTTAACAC TGATATGGAG AGAACCCAAC TTCTGGAAGA 61 AGAAGCTCGT CTGCTTGAAT TACCCATAGT GACCCCCTTA TAAGGCGAAT CTGCAAAGAG 121 TGATAAGTTG AATGGAGGTA TCGACAAAAA TTCGCAAGCA AAAAGGCTTG AAGAGATATA 181 CAAAAGACTT GATTTCATTG ATGCTTACTC GGCTGAGTCA CGTGCAGCAA CTATACTATC 241 GGGTTTGAGC TTCTCTCCAG AAATGCAAAA GAGAGCAACC AAAACATTTT CTGGAGGATG 301 GAGAATGAGA ATCGCTCTTG CTCGGGCATT GTTCATTGAA CCTGATCTAT TGTTGCTTGA 361 TGAACCCACG AATCATCTTG ATCTGCATGC TGTCTTATGG CTGGAAAG Predicted gene structure (within gDNA segment 23730 to 26455): Exon 1 24402 24486 ( 85 n); cDNA 1 85 ( 85 n); score: 0.953 Intron 1 24487 24612 ( 126 n); Pd: 0.999 (s: 0.94), Pa: 0.987 (s: 0.92) Exon 2 24613 24768 ( 156 n); cDNA 86 241 ( 156 n); score: 0.974 Intron 2 24769 25571 ( 803 n); Pd: 0.870 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 25572 25700 ( 129 n); cDNA 242 370 ( 129 n); score: 1.000 Intron 3 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 0) Exon 4 25808 25845 ( 38 n); cDNA 371 408 ( 38 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E301396+ 0.978 408 1.000 C PGS_C08SLm0006K11.1+_SGN-E301396+ (24402 24486,24613 24768,25572 25700,25808 25845) Alignment (genomic DNA sequence = upper lines): TACCTCAGTT TTGCAATGTA TTCTTAACAC TGATATGGAG AGAACCCAAC TTCTGGAAGA 24461 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTCACTT TTGCAATGTA TTCTTAACAC TGATATGGAG AGAACCCAAC TTCTGGAAGA 60 AGAGGCTCGT CTGCTTGAAT TACAGGTTAG AAACAGATCA ATGGCTAAGC TTTTATGTCA 24521 ||| |||||| |||||||||| ||| AGAAGCTCGT CTGCTTGAAT TACCC..... .......... .......... .......... 85 TATTATACTG TTTATTTTTA ATATACCTTC GTATTTTGTT CTCATTGGAT CAAGTATATT 24581 .......... .......... .......... .......... .......... .......... 85 CCCATTCCTT GGCATTTTCA TGATTTTCTA GAGAGTGACC GACTTAGAAG GCGAATCTGC 24641 | ||||||| |||| ||| |||||||||| .......... .......... .......... .ATAGTGACC CCCTTATAAG GCGAATCTGC 114 AAAGAGTGAT AAGTTGAATG GAGGTATCGA CAAAAATTCG CAAGCAAAAA GGCTTGAAGA 24701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTGAT AAGTTGAATG GAGGTATCGA CAAAAATTCG CAAGCAAAAA GGCTTGAAGA 174 GATATACAAA AGACTTGATT TCATTGATGC TTACTCGGCT GAGTCACGTG CAGCAACTAT 24761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATACAAA AGACTTGATT TCATTGATGC TTACTCGGCT GAGTCACGTG CAGCAACTAT 234 ACTATCGGTT AGTTTGACTT TGACTAGTAA TCCGATTTGC AAGCTTATGA TGACATCAGT 24821 ||||||| ACTATCG... .......... .......... .......... .......... .......... 241 CTCTCTGTAA CTGTTGAGAA AGTTTGTTCA CTTTATATAT CTTCTTGATG CTCTTTTTAC 24881 .......... .......... .......... .......... .......... .......... 241 TGAAACCACT TTCTTCATAA AAATAAAGTT TATTCACTTT ATACACTATG TTTAACTAAA 24941 .......... .......... .......... .......... .......... .......... 241 ACAGAGTTTG CATTTGATTT ATAATATCGC ACACAAATGC TGTACGTTAG AGTTTAATTT 25001 .......... .......... .......... .......... .......... .......... 241 ATAATGTATG AGCAAGATTC AGTCTACTAA TTCATGTACC TGGGATGCCT GTTCCTTTCC 25061 .......... .......... .......... .......... .......... .......... 241 TTCTGTTTCT ACCATGATTA TGCTTCCGCC TACTTTGTCT TAGGAATGTG TTTTGGATAT 25121 .......... .......... .......... .......... .......... .......... 241 GGCTTGAAAG TATGGAAGCT AGTCTCAAGC TAATCTTGCT GTTTTTGCCT CTTCTTAGAG 25181 .......... .......... .......... .......... .......... .......... 241 TTTGAGTTGT CTAAGCTTCT GTCCTAACTT CATGTTATCC GAACTATCTT GCTGTTTTGG 25241 .......... .......... .......... .......... .......... .......... 241 CCTCTCCTTG GAGTTTAAGT TGTATGTTGA GATTATTTCC CTTATAATTT AATGTTGTCT 25301 .......... .......... .......... .......... .......... .......... 241 TGTCGTTTTA AGCTGTGGAT CTGTGTACTA ACATCTTAAA TAGGAAGTTT TGAATGGGGG 25361 .......... .......... .......... .......... .......... .......... 241 AATATGCTAG AAGTTAATCT ATCTCTGGCA ATTGAAAGTT AGAACTCCTT TATTTAAGAG 25421 .......... .......... .......... .......... .......... .......... 241 GCTGGGTTTT ATTCTGCTGT AGTTTTGGCG TTCTTCAAGT TGGATGCTTG TCCACCTCAA 25481 .......... .......... .......... .......... .......... .......... 241 TTTTTCTTAT GATGTTTTGC CTATTGATCA TTTGTGTTCA CACCATTTGT AATGTATAGT 25541 .......... .......... .......... .......... .......... .......... 241 CTAGTTCTCA TTGGTGGCTA TTACTTCCAG GGTTTGAGCT TCTCTCCAGA AATGCAAAAG 25601 |||||||||| |||||||||| |||||||||| .......... .......... .......... GGTTTGAGCT TCTCTCCAGA AATGCAAAAG 271 AGAGCAACCA AAACATTTTC TGGAGGATGG AGAATGAGAA TCGCTCTTGC TCGGGCATTG 25661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAACCA AAACATTTTC TGGAGGATGG AGAATGAGAA TCGCTCTTGC TCGGGCATTG 331 TTCATTGAAC CTGATCTATT GTTGCTTGAT GAACCCACGG TGTGTTATTT CTTCTCGAGG 25721 |||||||||| |||||||||| |||||||||| ||||||||| TTCATTGAAC CTGATCTATT GTTGCTTGAT GAACCCACG. .......... .......... 370 ATGTAGATGT ACAGCTATTC AAATAATGAA CTTCTGTTTT CTTTTGCATG AAGAAATCAT 25781 .......... .......... .......... .......... .......... .......... 370 AGAACTTATG TTTTCCTTCC TTGCAGAATC ATCTTGATCT GCATGCTGTC TTATGGCTGG 25841 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AATC ATCTTGATCT GCATGCTGTC TTATGGCTGG 404 AAAG 25845 |||| AAAG 408 hqPGS_C08SLm0006K11.1+_SGN-E301396+ (24402 24486,24613 24768,25572 25700,25808 25845) ******************************************************************************** EST sequence 58 +strand 562 n (File: SGN-E298042+) 1 AGAGAGAGAA TCGCTCTTGC TCGGGCATTG TTCATTGAAC CTGATCTATT GTTGCTTGAT 61 GAACCCACGA ATCATCTTGA TCTGCATGCT GTCTTATGGC TGGAAAGTTA CCTGGTGAAG 121 TGGCCGAAGA CATTTATAGT TGTGTCTCAT GCTAGAGAGT TCTTGAATTC TGTAGTCACA 181 GATATCATCC ATCTACAAAA TCAGAAATTG AGCACCTTTA AAGGAGACTA TGATACATTT 241 GAAAGGACAC GAGAAGAACA AGTTAAGAAT CAACAGAAAG CATTCGAGGC AAATGAACGT 301 ACAAGGGCCC ACATGCAGAC CTTTATTGAC AAGTTCAGGT ACAATGCAAA GCGTGCATCT 361 CTTGTTCAGT CTAGAATTAA AGCACTGGAA CGAATTGGTC GTGTGGATGA AGTCATCAAT 421 GATCCTGACT ACAAGTTTGA GTTCCCTTCT CCTGATGATA GACCTGGCGC TCCTATTATA 481 AGCTTCAGTG ACGCATCCTT TGGATATCCT GGGGGACCAA TATTGTTCAA AAATTTGAAT 541 TTTGGAAATA GATTTGGATA GC Predicted gene structure (within gDNA segment 24987 to 27559): Exon 1 25632 25700 ( 69 n); cDNA 1 69 ( 69 n); score: 0.971 Intron 1 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 25808 25909 ( 102 n); cDNA 70 171 ( 102 n); score: 1.000 Intron 2 25910 26007 ( 98 n); Pd: 0.957 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 26008 26154 ( 147 n); cDNA 172 318 ( 147 n); score: 1.000 Intron 3 26155 26319 ( 165 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 4 26320 26382 ( 63 n); cDNA 319 381 ( 63 n); score: 0.984 Intron 4 26383 26504 ( 122 n); Pd: 0.999 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 5 26505 26551 ( 47 n); cDNA 382 428 ( 47 n); score: 1.000 Intron 5 26552 26716 ( 165 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 26717 26776 ( 60 n); cDNA 429 488 ( 60 n); score: 1.000 Intron 6 26777 26876 ( 100 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 7 26877 26949 ( 73 n); cDNA 489 562 ( 74 n); score: 0.966 MATCH C08SLm0006K11.1+ SGN-E298042+ 0.989 561 0.998 C PGS_C08SLm0006K11.1+_SGN-E298042+ (25632 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26949) Alignment (genomic DNA sequence = upper lines): AGAATGAGAA TCGCTCTTGC TCGGGCATTG TTCATTGAAC CTGATCTATT GTTGCTTGAT 25691 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGAGAA TCGCTCTTGC TCGGGCATTG TTCATTGAAC CTGATCTATT GTTGCTTGAT 60 GAACCCACGG TGTGTTATTT CTTCTCGAGG ATGTAGATGT ACAGCTATTC AAATAATGAA 25751 ||||||||| GAACCCACG. .......... .......... .......... .......... .......... 69 CTTCTGTTTT CTTTTGCATG AAGAAATCAT AGAACTTATG TTTTCCTTCC TTGCAGAATC 25811 |||| .......... .......... .......... .......... .......... ......AATC 73 ATCTTGATCT GCATGCTGTC TTATGGCTGG AAAGTTACCT GGTGAAGTGG CCGAAGACAT 25871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGATCT GCATGCTGTC TTATGGCTGG AAAGTTACCT GGTGAAGTGG CCGAAGACAT 133 TTATAGTTGT GTCTCATGCT AGAGAGTTCT TGAATTCTGT ACGTCCTTTC TTCTCTTTGA 25931 |||||||||| |||||||||| |||||||||| |||||||| TTATAGTTGT GTCTCATGCT AGAGAGTTCT TGAATTCT.. .......... .......... 171 CCTAAAACAA TAGTTGGGTT CAGTATGTTG ATGTTTGTTT GACATCTCAT AAACCTATCT 25991 .......... .......... .......... .......... .......... .......... 171 TTGCTTCTTT CTTCAGGTAG TCACAGATAT CATCCATCTA CAAAATCAGA AATTGAGCAC 26051 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTAG TCACAGATAT CATCCATCTA CAAAATCAGA AATTGAGCAC 215 CTTTAAAGGA GACTATGATA CATTTGAAAG GACACGAGAA GAACAAGTTA AGAATCAACA 26111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAAGGA GACTATGATA CATTTGAAAG GACACGAGAA GAACAAGTTA AGAATCAACA 275 GAAAGCATTC GAGGCAAATG AACGTACAAG GGCCCACATG CAGGTCTTTC CCAATTATAT 26171 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAAAGCATTC GAGGCAAATG AACGTACAAG GGCCCACATG CAG....... .......... 318 TTACCTTTTT TTTTTTGAGA TGATAACTTT AATTACATTC ACTTTATTGG TAGACTATTG 26231 .......... .......... .......... .......... .......... .......... 318 CAAACAGATT ATTTGCGACC TTATTTGCAG ATTTCTTGTC TCGCTGTTTA ATGCTTTGAT 26291 .......... .......... .......... .......... .......... .......... 318 ACATTTTTTT GGCTATAATG CTGTGCAGAC CTTTATTGAC AAGTTCAGGT ACAATGCAAA 26351 || |||||||||| |||||||||| |||||||||| .......... .......... ........AC CTTTATTGAC AAGTTCAGGT ACAATGCAAA 350 GCGTGCATCT CTTGTTCAGT CTAGAATTAA GGTATGCATT CATTGCTGCT CCTATATATC 26411 |||||||||| |||||||||| |||||||||| GCGTGCATCT CTTGTTCAGT CTAGAATTAA A......... .......... .......... 381 TTGATCCAAT TGTTTAATAA TTTAATTAGG TCCACTTTTG ATTCCCTAGC ATGCCATGAT 26471 .......... .......... .......... .......... .......... .......... 381 CAGTACCTGA ATCGTTTTCC TTGAATTTGA CAGGCACTGG AACGAATTGG TCGTGTGGAT 26531 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GCACTGG AACGAATTGG TCGTGTGGAT 408 GAAGTCATCA ATGATCCTGA GTACGCATTC ATTCCTTTAA CACATTGCTC CTATATGTTT 26591 |||||||||| |||||||||| GAAGTCATCA ATGATCCTGA .......... .......... .......... .......... 428 GTGTATTTTA ACTCTCTTAT GATGTTTAAC TTGTTATAAC CTGCATCGAT AAAATTCCGA 26651 .......... .......... .......... .......... .......... .......... 428 TTTCTGTCAT GTTGCATTTT TATAATTAAA TGAACTCATT GTTATTTTGC ATATGATATA 26711 .......... .......... .......... .......... .......... .......... 428 TGCAGCTACA AGTTTGAGTT CCCTTCTCCT GATGATAGAC CTGGCGCTCC TATTATAAGC 26771 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....CTACA AGTTTGAGTT CCCTTCTCCT GATGATAGAC CTGGCGCTCC TATTATAAGC 483 TTCAGGTTAA ACATCTCTTA GTCTGTGGCT AAGACATTCT TGTGATCTCT TGTCAGACAG 26831 ||||| TTCAG..... .......... .......... .......... .......... .......... 488 CAAATCTCAG CTAATTAACT TCTTACCTTA TTGTAACTAA TGCAGTGACG CATCCTTTGG 26891 ||||| |||||||||| .......... .......... .......... .......... .....TGACG CATCCTTTGG 503 ATATCCTGGG GGACCAATAT TGTTCAAAAA TTTGAATTTT GG-AATAGAT TTGGATAGC 26949 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ||||||||| ATATCCTGGG GGACCAATAT TGTTCAAAAA TTTGAATTTT GGAAATAGAT TTGGATAGC 562 hqPGS_C08SLm0006K11.1+_SGN-E298042+ (25632 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26949) ******************************************************************************** EST sequence 69 +strand 822 n (File: SGN-E545737+) 1 GACGCATCCT TTGGATATCC TGGGGGACCA ATATTGTTCA AAAATTTGAA TTTTGGAATA 61 GATTTGGATA GCAGAGTAGC AATGGTTGGT CCTAATGGTA TTGGAAAGTC AACAATACTT 121 AAGCTTATTT CTGGGGAGCT TCAACCAACC TCAGGGACTG TTTTCCGCTC TGCTAAGGTC 181 CGTATTGCTG TATTTAGTCA GCATCATGTT GATGGGCTGG ATCTGTCCTC AAATCCCCTC 241 TTATACATGA TGCGTTGCTT TCCAGGAGTG CCTGAACAAA AATTACGTGG TCATCTAGGT 301 TCATTTGGTA TAACCGGAAA TCTTGCTCTT CAGCCCATGT ACACTTTATC TGGTGGCCAA 361 AAAAGCAGAG TTGCATTTGC AAAGATAACT TTCAAGAAAC CTCACATATT GCTTCTTGAT 421 GAGCCGTCAA ATCACTTGGA TCTGGACGCT GTGGAAGCCT TGATACAAGG TCTTGTCTTG 481 TTCCAAGGAG GCGTCCTGAT GGTCAGTCAC GATGAACATT TAATATCTGG CAGTGTTGAT 541 CAACTCTGGG CTGTCTCTGA GGGCAGAGTG ACGCCTTTTG ACGGGACATT CCAAGATTAC 601 AAGAAAATAT TGCAATCATA AACACTTCTG CTGCTTTCTG AAGTGAACGA ACTATAATTA 661 GTTACTTATG GCCTAAACCC CTACTTTTAT GCAGAGACCA CATGTTCGAT GTAAAATTTC 721 GAAACCAAAT TCTGAAGAAT GTTCTAAAAC AAATAGTGAT TTTCTACTCC TACTTGCTTC 781 TATTTACACT GTCCAAATTG GACAAAACAT TTTCTCGATT TG Predicted gene structure (within gDNA segment 26278 to 29797): Exon 1 26878 26959 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 26960 27217 ( 258 n); Pd: 0.833 (s: 1.00), Pa: 0.916 (s: 1.00) Exon 2 27218 27312 ( 95 n); cDNA 83 177 ( 95 n); score: 1.000 Intron 2 27313 27635 ( 323 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 27636 27722 ( 87 n); cDNA 178 264 ( 87 n); score: 1.000 Intron 3 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 27952 28039 ( 88 n); cDNA 265 352 ( 88 n); score: 1.000 Intron 4 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 5 28322 28407 ( 86 n); cDNA 353 438 ( 86 n); score: 1.000 Intron 5 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 6 28704 28766 ( 63 n); cDNA 439 501 ( 63 n); score: 1.000 Intron 6 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 7 28867 29187 ( 321 n); cDNA 502 822 ( 321 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E545737+ 1.000 822 1.000 C PGS_C08SLm0006K11.1+_SGN-E545737+ (26878 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29187) Alignment (genomic DNA sequence = upper lines): GACGCATCCT TTGGATATCC TGGGGGACCA ATATTGTTCA AAAATTTGAA TTTTGGAATA 26937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCATCCT TTGGATATCC TGGGGGACCA ATATTGTTCA AAAATTTGAA TTTTGGAATA 60 GATTTGGATA GCAGAGTAGC AAGTAAGACC TTTATTGTCT ACCAATCAAG TATTTTCAAG 26997 |||||||||| |||||||||| || GATTTGGATA GCAGAGTAGC AA........ .......... .......... .......... 82 TTCACTTAAC TGGTGCAAAC CTTTGTAAAC TGTACGTATG GGTCAGTAAT ATGTCTCTCT 27057 .......... .......... .......... .......... .......... .......... 82 GCATTGACGT TGAGTTTTTC TGTTGGGAAG TAAAATTAGA TCTCTTTATT TGTGAGTTAG 27117 .......... .......... .......... .......... .......... .......... 82 GTAGTATGTG GTTTTGGCAT GTGTATTTTT ATAATTGTTT TTTAATCATT TTTACTGTTT 27177 .......... .......... .......... .......... .......... .......... 82 TACATATCAT GGACCTTGTC TCACCTTATG TATTTTCCAG TGGTTGGTCC TAATGGTATT 27237 |||||||||| |||||||||| .......... .......... .......... .......... TGGTTGGTCC TAATGGTATT 102 GGAAAGTCAA CAATACTTAA GCTTATTTCT GGGGAGCTTC AACCAACCTC AGGGACTGTT 27297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGTCAA CAATACTTAA GCTTATTTCT GGGGAGCTTC AACCAACCTC AGGGACTGTT 162 TTCCGCTCTG CTAAGGTAAA CTTTATTTGG CAAAAACTTA CGAGATTTTG TGGGTTTTTT 27357 |||||||||| ||||| TTCCGCTCTG CTAAG..... .......... .......... .......... .......... 177 TTTATAAAAA AAAAATCACT TCCAATGTCT ACTAGTTCTG TCCTTCACAC CATATATCAA 27417 .......... .......... .......... .......... .......... .......... 177 TATTGTTCTG GTCAATTTGT GTTTCAGCCG TACGTTCTCT CATTGCAATT CCTGTCACCT 27477 .......... .......... .......... .......... .......... .......... 177 TTTAGTTATT AAAAGTCTAT AGACTAATGA TTCTGTATGA GCAAATGCTA GTGGTGTTCT 27537 .......... .......... .......... .......... .......... .......... 177 TTTGACCTTA TAATTATTTG TGCAGGCAAA TGTTTCATTT TGCTCTATTC AGTTACTTGA 27597 .......... .......... .......... .......... .......... .......... 177 TCTTAATGCA TTCTAAATGC TCTTCACTTT TTGTTTAGGT CCGTATTGCT GTATTTAGTC 27657 || |||||||||| |||||||||| .......... .......... .......... ........GT CCGTATTGCT GTATTTAGTC 199 AGCATCATGT TGATGGGCTG GATCTGTCCT CAAATCCCCT CTTATACATG ATGCGTTGCT 27717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATCATGT TGATGGGCTG GATCTGTCCT CAAATCCCCT CTTATACATG ATGCGTTGCT 259 TTCCAGTAAG TTCTCCTAAT CAATGATGTA TTTTCTTGTA AATTCTAAAA TGTATGTGTA 27777 ||||| TTCCA..... .......... .......... .......... .......... .......... 264 ATAAGTTCTC TCTAAAGAAG GTGGGTCAAC AGTTGATTTT TCTGAATTTA TTTGTGTCCG 27837 .......... .......... .......... .......... .......... .......... 264 AACTCCTGAT AAGACATTTT TAAAGGTTTA ATTGCTCCCT TACATCTCAT ATTGCCAAAG 27897 .......... .......... .......... .......... .......... .......... 264 TGAATCTGCA AGTCATCTTT TTTAATGTAT TGACCTTGCT CTGGCTTCCT GCAGGGAGTG 27957 |||||| .......... .......... .......... .......... .......... ....GGAGTG 270 CCTGAACAAA AATTACGTGG TCATCTAGGT TCATTTGGTA TAACCGGAAA TCTTGCTCTT 28017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAACAAA AATTACGTGG TCATCTAGGT TCATTTGGTA TAACCGGAAA TCTTGCTCTT 330 CAGCCCATGT ACACTTTATC TGGTATGTTA GCATTCTACT TGTGTTTTTT TTTTTGATAA 28077 |||||||||| |||||||||| || CAGCCCATGT ACACTTTATC TG........ .......... .......... .......... 352 AGTAAATAAA TGATATTAGG AAGCATCAAG AAGATGCAAA GTCACAAAAC ACTATGTGCT 28137 .......... .......... .......... .......... .......... .......... 352 AGAAAGCTGC TCCAAACAGC AATATATGGA GCTAGCTTGG CAAAAACTAC TCTACTGTAC 28197 .......... .......... .......... .......... .......... .......... 352 TAGAGATATA CTTGTGTTCT TGTTTAGATT ACAATGATTC AGTTCCGCCT TCTGTCACTT 28257 .......... .......... .......... .......... .......... .......... 352 GGGGTCAAGA GTTGTGGCAT AATAACTTAT AGTCCACATT TTGGATTGAT CTATGGGATC 28317 .......... .......... .......... .......... .......... .......... 352 TCAGGTGGCC AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA 28377 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTGGCC AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA 408 TTGCTTCTTG ATGAGCCGTC AAATCACTTG GTAAGTTGAA TTCTACTTGT TTTAGTTTCT 28437 |||||||||| |||||||||| |||||||||| TTGCTTCTTG ATGAGCCGTC AAATCACTTG .......... .......... .......... 438 TATTCACCAT CTTTTCTTCA TACATCCGTG ATTTTCATGT CTTCTTGTTG CCGAATAACA 28497 .......... .......... .......... .......... .......... .......... 438 TACTTGGTCG GAGTAAAAAG TGGAACATAG AATGCCCGAA AAAAAACTGG CGCGTTTGTG 28557 .......... .......... .......... .......... .......... .......... 438 GGTTTTAGGA AGGGCCTGGT GTGGTTTCAT GATTTTTTCT TGATGGCATT TAATTTCAAC 28617 .......... .......... .......... .......... .......... .......... 438 AGCTAAAGCA AAGGATGTAC TTAGTGCTTC ATTTATCCAA AGCTTCTTGC ATATGCAATG 28677 .......... .......... .......... .......... .......... .......... 438 GCATTATCTA ATCGAGTTCT ATGCAGGATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC 28737 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC 472 TTGTCTTGTT CCAAGGAGGC GTCCTGATGG TACTATAAAA CTTCTGTCAA TTATTTTTTT 28797 |||||||||| |||||||||| ||||||||| TTGTCTTGTT CCAAGGAGGC GTCCTGATG. .......... .......... .......... 501 GGCTAAATGG TAGCATGTTT TTGGTTTTGC TGGTGTTTAA TGGGAGCTGC TACGTGATGT 28857 .......... .......... .......... .......... .......... .......... 501 TATTTACAGG TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT 28917 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT 552 GTCTCTGAGG GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG 28977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCTGAGG GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG 612 CAATCATAAA CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC 29037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCATAAA CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC 672 CTAAACCCCT ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC 29097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAACCCCT ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC 732 TGAAGAATGT TCTAAAACAA ATAGTGATTT TCTACTCCTA CTTGCTTCTA TTTACACTGT 29157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAATGT TCTAAAACAA ATAGTGATTT TCTACTCCTA CTTGCTTCTA TTTACACTGT 792 CCAAATTGGA CAAAACATTT TCTCGATTTG 29187 |||||||||| |||||||||| |||||||||| CCAAATTGGA CAAAACATTT TCTCGATTTG 822 hqPGS_C08SLm0006K11.1+_SGN-E545737+ (26878 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29187) ******************************************************************************** EST sequence 66 +strand 551 n (File: SGN-E312499+) 1 CTTTGGATAT TCCTGGGGGA CCAATATTGT TCAAAAATTT GAATTTTGGA ATAGATTTGG 61 ATAGCAGAGT AGCAATGGTT GGTCCTAATG GTATTGGAAA GTCAACAATA CTTAAGCTTA 121 TTTCTGGGGA GCTTCAACCA ACCTCAGGGA CTGTTTTCCG CTCTGCTAAG GTCCGTATTG 181 CTGTATTTAG TCAGCATCAT GTTGATGGGC TGGATCTGTC CTCAAATCCC CTCTTATACC 241 ATGATGCCTT GCTTTCCAGG AGTGCCTGAA CAAAAATTAC CGTGGTCATC TAGGTTCATT 301 TGGTATAACC GGAAATCTTG CTCTTCAGCC CATGTACCAC TTTATCTGGT GGCCAAAAAA 361 GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA CATATTGCTT CTTGATGAGC 421 CGTCAAATCA CTTGGATCTG GACGCTGTGG AAGCCTTGAT ACCAGGTCTT GTCTTGTTCC 481 AAGGAGGCGT CCTGATGGTC AGTCACGATG AACATTTAAT ATCTGGCAGT GTTGATCAAC 541 TCTGGGCTGT C Predicted gene structure (within gDNA segment 26195 to 29530): Exon 1 26886 26959 ( 74 n); cDNA 1 75 ( 75 n); score: 0.966 Intron 1 26960 27217 ( 258 n); Pd: 0.833 (s: 1.00), Pa: 0.916 (s: 1.00) Exon 2 27218 27312 ( 95 n); cDNA 76 170 ( 95 n); score: 1.000 Intron 2 27313 27635 ( 323 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 27636 27722 ( 87 n); cDNA 171 258 ( 88 n); score: 0.960 Intron 3 27723 27951 ( 229 n); Pd: 0.999 (s: 0.93), Pa: 0.996 (s: 0.95) Exon 4 27952 28039 ( 88 n); cDNA 259 348 ( 90 n); score: 0.943 Intron 4 28040 28321 ( 282 n); Pd: 0.995 (s: 0.95), Pa: 0.962 (s: 1.00) Exon 5 28322 28407 ( 86 n); cDNA 349 434 ( 86 n); score: 1.000 Intron 5 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 0.98) Exon 6 28704 28766 ( 63 n); cDNA 435 497 ( 63 n); score: 0.984 Intron 6 28767 28866 ( 100 n); Pd: 0.995 (s: 0.98), Pa: 0.977 (s: 1.00) Exon 7 28867 28920 ( 54 n); cDNA 498 551 ( 54 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E312499+ 0.978 547 0.993 C PGS_C08SLm0006K11.1+_SGN-E312499+ (26886 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 28920) Alignment (genomic DNA sequence = upper lines): CTTTGGATA- TCCTGGGGGA CCAATATTGT TCAAAAATTT GAATTTTGGA ATAGATTTGG 26944 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGATAT TCCTGGGGGA CCAATATTGT TCAAAAATTT GAATTTTGGA ATAGATTTGG 60 ATAGCAGAGT AGCAAGTAAG ACCTTTATTG TCTACCAATC AAGTATTTTC AAGTTCACTT 27004 |||||||||| ||||| ATAGCAGAGT AGCAA..... .......... .......... .......... .......... 75 AACTGGTGCA AACCTTTGTA AACTGTACGT ATGGGTCAGT AATATGTCTC TCTGCATTGA 27064 .......... .......... .......... .......... .......... .......... 75 CGTTGAGTTT TTCTGTTGGG AAGTAAAATT AGATCTCTTT ATTTGTGAGT TAGGTAGTAT 27124 .......... .......... .......... .......... .......... .......... 75 GTGGTTTTGG CATGTGTATT TTTATAATTG TTTTTTAATC ATTTTTACTG TTTTACATAT 27184 .......... .......... .......... .......... .......... .......... 75 CATGGACCTT GTCTCACCTT ATGTATTTTC CAGTGGTTGG TCCTAATGGT ATTGGAAAGT 27244 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TGGTTGG TCCTAATGGT ATTGGAAAGT 102 CAACAATACT TAAGCTTATT TCTGGGGAGC TTCAACCAAC CTCAGGGACT GTTTTCCGCT 27304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAATACT TAAGCTTATT TCTGGGGAGC TTCAACCAAC CTCAGGGACT GTTTTCCGCT 162 CTGCTAAGGT AAACTTTATT TGGCAAAAAC TTACGAGATT TTGTGGGTTT TTTTTTATAA 27364 |||||||| CTGCTAAG.. .......... .......... .......... .......... .......... 170 AAAAAAAATC ACTTCCAATG TCTACTAGTT CTGTCCTTCA CACCATATAT CAATATTGTT 27424 .......... .......... .......... .......... .......... .......... 170 CTGGTCAATT TGTGTTTCAG CCGTACGTTC TCTCATTGCA ATTCCTGTCA CCTTTTAGTT 27484 .......... .......... .......... .......... .......... .......... 170 ATTAAAAGTC TATAGACTAA TGATTCTGTA TGAGCAAATG CTAGTGGTGT TCTTTTGACC 27544 .......... .......... .......... .......... .......... .......... 170 TTATAATTAT TTGTGCAGGC AAATGTTTCA TTTTGCTCTA TTCAGTTACT TGATCTTAAT 27604 .......... .......... .......... .......... .......... .......... 170 GCATTCTAAA TGCTCTTCAC TTTTTGTTTA GGTCCGTATT GCTGTATTTA GTCAGCATCA 27664 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTCCGTATT GCTGTATTTA GTCAGCATCA 199 TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATA- CATGATGCGT TGCTTTCCAG 27723 |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | ||||||||| TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC CATGATGCCT TGCTTTCCA. 258 TAAGTTCTCC TAATCAATGA TGTATTTTCT TGTAAATTCT AAAATGTATG TGTAATAAGT 27783 .......... .......... .......... .......... .......... .......... 258 TCTCTCTAAA GAAGGTGGGT CAACAGTTGA TTTTTCTGAA TTTATTTGTG TCCGAACTCC 27843 .......... .......... .......... .......... .......... .......... 258 TGATAAGACA TTTTTAAAGG TTTAATTGCT CCCTTACATC TCATATTGCC AAAGTGAATC 27903 .......... .......... .......... .......... .......... .......... 258 TGCAAGTCAT CTTTTTTAAT GTATTGACCT TGCTCTGGCT TCCTGCAGGG AGTGCCTGAA 27963 || |||||||||| .......... .......... .......... .......... ........GG AGTGCCTGAA 270 CAAAAATTA- CGTGGTCATC TAGGTTCATT TGGTATAACC GGAAATCTTG CTCTTCAGCC 28022 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATTAC CGTGGTCATC TAGGTTCATT TGGTATAACC GGAAATCTTG CTCTTCAGCC 330 CATGTA-CAC TTTATCTGGT ATGTTAGCAT TCTACTTGTG TTTTTTTTTT TGATAAAGTA 28081 |||||| ||| |||||||| CATGTACCAC TTTATCTG.. .......... .......... .......... .......... 348 AATAAATGAT ATTAGGAAGC ATCAAGAAGA TGCAAAGTCA CAAAACACTA TGTGCTAGAA 28141 .......... .......... .......... .......... .......... .......... 348 AGCTGCTCCA AACAGCAATA TATGGAGCTA GCTTGGCAAA AACTACTCTA CTGTACTAGA 28201 .......... .......... .......... .......... .......... .......... 348 GATATACTTG TGTTCTTGTT TAGATTACAA TGATTCAGTT CCGCCTTCTG TCACTTGGGG 28261 .......... .......... .......... .......... .......... .......... 348 TCAAGAGTTG TGGCATAATA ACTTATAGTC CACATTTTGG ATTGATCTAT GGGATCTCAG 28321 .......... .......... .......... .......... .......... .......... 348 GTGGCCAAAA AAGCAGAGTT GCATTTGCAA AGATAACTTT CAAGAAACCT CACATATTGC 28381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCCAAAA AAGCAGAGTT GCATTTGCAA AGATAACTTT CAAGAAACCT CACATATTGC 408 TTCTTGATGA GCCGTCAAAT CACTTGGTAA GTTGAATTCT ACTTGTTTTA GTTTCTTATT 28441 |||||||||| |||||||||| |||||| TTCTTGATGA GCCGTCAAAT CACTTG.... .......... .......... .......... 434 CACCATCTTT TCTTCATACA TCCGTGATTT TCATGTCTTC TTGTTGCCGA ATAACATACT 28501 .......... .......... .......... .......... .......... .......... 434 TGGTCGGAGT AAAAAGTGGA ACATAGAATG CCCGAAAAAA AACTGGCGCG TTTGTGGGTT 28561 .......... .......... .......... .......... .......... .......... 434 TTAGGAAGGG CCTGGTGTGG TTTCATGATT TTTTCTTGAT GGCATTTAAT TTCAACAGCT 28621 .......... .......... .......... .......... .......... .......... 434 AAAGCAAAGG ATGTACTTAG TGCTTCATTT ATCCAAAGCT TCTTGCATAT GCAATGGCAT 28681 .......... .......... .......... .......... .......... .......... 434 TATCTAATCG AGTTCTATGC AGGATCTGGA CGCTGTGGAA GCCTTGATAC AAGGTCTTGT 28741 |||||||| |||||||||| |||||||||| ||||||||| .......... .......... ..GATCTGGA CGCTGTGGAA GCCTTGATAC CAGGTCTTGT 472 CTTGTTCCAA GGAGGCGTCC TGATGGTACT ATAAAACTTC TGTCAATTAT TTTTTTGGCT 28801 |||||||||| |||||||||| ||||| CTTGTTCCAA GGAGGCGTCC TGATG..... .......... .......... .......... 497 AAATGGTAGC ATGTTTTTGG TTTTGCTGGT GTTTAATGGG AGCTGCTACG TGATGTTATT 28861 .......... .......... .......... .......... .......... .......... 497 TACAGGTCAG TCACGATGAA CATTTAATAT CTGGCAGTGT TGATCAACTC TGGGCTGTC 28920 ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| .....GTCAG TCACGATGAA CATTTAATAT CTGGCAGTGT TGATCAACTC TGGGCTGTC 551 hqPGS_C08SLm0006K11.1+_SGN-E312499+ (26886 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 28920) ******************************************************************************** EST sequence 134 -strand 855 n (File: SGN-E549256-) 1 AAAATTTGAA TTTGGAATAG ATTTGANTAG CAGAGTAGCA ATGGTTGGTC CTAATGGTAT 61 TGAAAAGTCA ACAATACTTA AGCTTATTTC TGGGGAGCTT CAACCAACCT CAGGGACTGT 121 TTTCCGCTCT GCTAAGGTCC GTATTGCTGT ATTTAGTCAG CATCATGTTG ATGGGCTGGA 181 TCTGTCCTCA AATCCCCTCT TATACATGAT GCGTTGCTTT CCAGGAGTGC CTGAACAAAA 241 ATTACGTGGT CATCTAGGTT CATTTGGTAT AACCGGAAAT CTTGCTCTTC AGCCCATGTA 301 CACTTTATCT GGTGGCCAAA AAAGCAGAGT TGCATTTGCA AAGATAACTT TCAAGAAACC 361 TCACATATTG CTTCTTGATG AGCCGTCAAA TCACTTGGAT CTGGACGCTG TGGAAGCCTT 421 GATACAAGGT CTTGTCTTGT TCCAAGGAGG CGTCCTGATG GTCAGTCACG ATGAACATTT 481 AATATCTGGC AGTGTTGATC AACTCTGGGC TGTCTCTGAG GGCAGAGTGA CGCCTTTTGA 541 CGGGACATTC CAAGATTACA AGAAAATATT GCAATCATAA ACACTTCTGC TGCTTTCTGA 601 AGTGAACGAA CTATAATTAG TTACTTATGG CCTAAACCCC TACTTTTATG CAGAGACCAC 661 ATGTTCGATG TAAAATTTCG AAACCAAATT CTGAAGAATG TTCTAAAACA AATAGTGATT 721 TTCTACTCCT ACTTGCTTCT ATTTACACTG TCCAAATTGG ACAAAACATT TTCTCGATTT 781 GATGAACTTT ATTTCATCAA TTTTATATTA ACAAATCAAT GAAATAAAAG TGTTATTAAA 841 AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 26198 to 30014): Exon 1 26918 26959 ( 42 n); cDNA 1 41 ( 41 n); score: 0.929 Intron 1 26960 27217 ( 258 n); Pd: 0.833 (s: 0.93), Pa: 0.916 (s: 0.98) Exon 2 27218 27312 ( 95 n); cDNA 42 136 ( 95 n); score: 0.989 Intron 2 27313 27635 ( 323 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 27636 27722 ( 87 n); cDNA 137 223 ( 87 n); score: 1.000 Intron 3 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 27952 28039 ( 88 n); cDNA 224 311 ( 88 n); score: 1.000 Intron 4 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 5 28322 28407 ( 86 n); cDNA 312 397 ( 86 n); score: 1.000 Intron 5 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 6 28704 28766 ( 63 n); cDNA 398 460 ( 63 n); score: 1.000 Intron 6 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 7 28867 29250 ( 384 n); cDNA 461 844 ( 384 n); score: 0.992 PPA cDNA 845 855 MATCH C08SLm0006K11.1+ SGN-E549256- 0.995 845 0.988 C PGS_C08SLm0006K11.1+_SGN-E549256- (26918 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29250) Alignment (genomic DNA sequence = upper lines): AAAATTTGAA TTTTGGAATA GATTTGGATA GCAGAGTAGC AAGTAAGACC TTTATTGTCT 26977 |||||||||| ||||||||| |||||| || |||||||||| || AAAATTTGAA -TTTGGAATA GATTTGANTA GCAGAGTAGC AA........ .......... 41 ACCAATCAAG TATTTTCAAG TTCACTTAAC TGGTGCAAAC CTTTGTAAAC TGTACGTATG 27037 .......... .......... .......... .......... .......... .......... 41 GGTCAGTAAT ATGTCTCTCT GCATTGACGT TGAGTTTTTC TGTTGGGAAG TAAAATTAGA 27097 .......... .......... .......... .......... .......... .......... 41 TCTCTTTATT TGTGAGTTAG GTAGTATGTG GTTTTGGCAT GTGTATTTTT ATAATTGTTT 27157 .......... .......... .......... .......... .......... .......... 41 TTTAATCATT TTTACTGTTT TACATATCAT GGACCTTGTC TCACCTTATG TATTTTCCAG 27217 .......... .......... .......... .......... .......... .......... 41 TGGTTGGTCC TAATGGTATT GGAAAGTCAA CAATACTTAA GCTTATTTCT GGGGAGCTTC 27277 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TGGTTGGTCC TAATGGTATT GAAAAGTCAA CAATACTTAA GCTTATTTCT GGGGAGCTTC 101 AACCAACCTC AGGGACTGTT TTCCGCTCTG CTAAGGTAAA CTTTATTTGG CAAAAACTTA 27337 |||||||||| |||||||||| |||||||||| ||||| AACCAACCTC AGGGACTGTT TTCCGCTCTG CTAAG..... .......... .......... 136 CGAGATTTTG TGGGTTTTTT TTTATAAAAA AAAAATCACT TCCAATGTCT ACTAGTTCTG 27397 .......... .......... .......... .......... .......... .......... 136 TCCTTCACAC CATATATCAA TATTGTTCTG GTCAATTTGT GTTTCAGCCG TACGTTCTCT 27457 .......... .......... .......... .......... .......... .......... 136 CATTGCAATT CCTGTCACCT TTTAGTTATT AAAAGTCTAT AGACTAATGA TTCTGTATGA 27517 .......... .......... .......... .......... .......... .......... 136 GCAAATGCTA GTGGTGTTCT TTTGACCTTA TAATTATTTG TGCAGGCAAA TGTTTCATTT 27577 .......... .......... .......... .......... .......... .......... 136 TGCTCTATTC AGTTACTTGA TCTTAATGCA TTCTAAATGC TCTTCACTTT TTGTTTAGGT 27637 || .......... .......... .......... .......... .......... ........GT 138 CCGTATTGCT GTATTTAGTC AGCATCATGT TGATGGGCTG GATCTGTCCT CAAATCCCCT 27697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTATTGCT GTATTTAGTC AGCATCATGT TGATGGGCTG GATCTGTCCT CAAATCCCCT 198 CTTATACATG ATGCGTTGCT TTCCAGTAAG TTCTCCTAAT CAATGATGTA TTTTCTTGTA 27757 |||||||||| |||||||||| ||||| CTTATACATG ATGCGTTGCT TTCCA..... .......... .......... .......... 223 AATTCTAAAA TGTATGTGTA ATAAGTTCTC TCTAAAGAAG GTGGGTCAAC AGTTGATTTT 27817 .......... .......... .......... .......... .......... .......... 223 TCTGAATTTA TTTGTGTCCG AACTCCTGAT AAGACATTTT TAAAGGTTTA ATTGCTCCCT 27877 .......... .......... .......... .......... .......... .......... 223 TACATCTCAT ATTGCCAAAG TGAATCTGCA AGTCATCTTT TTTAATGTAT TGACCTTGCT 27937 .......... .......... .......... .......... .......... .......... 223 CTGGCTTCCT GCAGGGAGTG CCTGAACAAA AATTACGTGG TCATCTAGGT TCATTTGGTA 27997 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGAGTG CCTGAACAAA AATTACGTGG TCATCTAGGT TCATTTGGTA 269 TAACCGGAAA TCTTGCTCTT CAGCCCATGT ACACTTTATC TGGTATGTTA GCATTCTACT 28057 |||||||||| |||||||||| |||||||||| |||||||||| || TAACCGGAAA TCTTGCTCTT CAGCCCATGT ACACTTTATC TG........ .......... 311 TGTGTTTTTT TTTTTGATAA AGTAAATAAA TGATATTAGG AAGCATCAAG AAGATGCAAA 28117 .......... .......... .......... .......... .......... .......... 311 GTCACAAAAC ACTATGTGCT AGAAAGCTGC TCCAAACAGC AATATATGGA GCTAGCTTGG 28177 .......... .......... .......... .......... .......... .......... 311 CAAAAACTAC TCTACTGTAC TAGAGATATA CTTGTGTTCT TGTTTAGATT ACAATGATTC 28237 .......... .......... .......... .......... .......... .......... 311 AGTTCCGCCT TCTGTCACTT GGGGTCAAGA GTTGTGGCAT AATAACTTAT AGTCCACATT 28297 .......... .......... .......... .......... .......... .......... 311 TTGGATTGAT CTATGGGATC TCAGGTGGCC AAAAAAGCAG AGTTGCATTT GCAAAGATAA 28357 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTGGCC AAAAAAGCAG AGTTGCATTT GCAAAGATAA 347 CTTTCAAGAA ACCTCACATA TTGCTTCTTG ATGAGCCGTC AAATCACTTG GTAAGTTGAA 28417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCAAGAA ACCTCACATA TTGCTTCTTG ATGAGCCGTC AAATCACTTG .......... 397 TTCTACTTGT TTTAGTTTCT TATTCACCAT CTTTTCTTCA TACATCCGTG ATTTTCATGT 28477 .......... .......... .......... .......... .......... .......... 397 CTTCTTGTTG CCGAATAACA TACTTGGTCG GAGTAAAAAG TGGAACATAG AATGCCCGAA 28537 .......... .......... .......... .......... .......... .......... 397 AAAAAACTGG CGCGTTTGTG GGTTTTAGGA AGGGCCTGGT GTGGTTTCAT GATTTTTTCT 28597 .......... .......... .......... .......... .......... .......... 397 TGATGGCATT TAATTTCAAC AGCTAAAGCA AAGGATGTAC TTAGTGCTTC ATTTATCCAA 28657 .......... .......... .......... .......... .......... .......... 397 AGCTTCTTGC ATATGCAATG GCATTATCTA ATCGAGTTCT ATGCAGGATC TGGACGCTGT 28717 |||| |||||||||| .......... .......... .......... .......... ......GATC TGGACGCTGT 411 GGAAGCCTTG ATACAAGGTC TTGTCTTGTT CCAAGGAGGC GTCCTGATGG TACTATAAAA 28777 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGAAGCCTTG ATACAAGGTC TTGTCTTGTT CCAAGGAGGC GTCCTGATG. .......... 460 CTTCTGTCAA TTATTTTTTT GGCTAAATGG TAGCATGTTT TTGGTTTTGC TGGTGTTTAA 28837 .......... .......... .......... .......... .......... .......... 460 TGGGAGCTGC TACGTGATGT TATTTACAGG TCAGTCACGA TGAACATTTA ATATCTGGCA 28897 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TCAGTCACGA TGAACATTTA ATATCTGGCA 491 GTGTTGATCA ACTCTGGGCT GTCTCTGAGG GCAGAGTGAC GCCTTTTGAC GGGACATTCC 28957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTGATCA ACTCTGGGCT GTCTCTGAGG GCAGAGTGAC GCCTTTTGAC GGGACATTCC 551 AAGATTACAA GAAAATATTG CAATCATAAA CACTTCTGCT GCTTTCTGAA GTGAACGAAC 29017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTACAA GAAAATATTG CAATCATAAA CACTTCTGCT GCTTTCTGAA GTGAACGAAC 611 TATAATTAGT TACTTATGGC CTAAACCCCT ACTTTTATGC AGAGACCACA TGTTCGATGT 29077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAATTAGT TACTTATGGC CTAAACCCCT ACTTTTATGC AGAGACCACA TGTTCGATGT 671 AAAATTTCGA AACCAAATTC TGAAGAATGT TCTAAAACAA ATAGTGATTT TCTACTCCTA 29137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTCGA AACCAAATTC TGAAGAATGT TCTAAAACAA ATAGTGATTT TCTACTCCTA 731 CTTGCTTCTA TTTACACTGT CCAAATTGGA CAAAACATTT TCTCGATTTG ATGAACTTTA 29197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCTTCTA TTTACACTGT CCAAATTGGA CAAAACATTT TCTCGATTTG ATGAACTTTA 791 TTTCATCAAT TTTATATTAA CAAATCAATG AAATAAAAGT GTTATTACGA CAA 29250 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | || TTTCATCAAT TTTATATTAA CAAATCAATG AAATAAAAGT GTTATTAAAA AAA 844 hqPGS_C08SLm0006K11.1+_SGN-E549256- (26918 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29250) ******************************************************************************** EST sequence 2 +strand 534 n (File: SGN-E551023+) 1 GTTTTCCGCT CTGCTAAGGT CCGTATTGTT GTATTTAGTC AGCATCATGT TGATGGGCTG 61 GATCTGTCCT CAAATCCCCT CTTATACATG ATGCGTTGCT TTCCAGGAGT GCCTGAACAA 121 AAATTACATG GTCATCTAGG TTCATTTGGT ATAACCGGAA ATCTTGCTCT TCAGCCCATG 181 TACACTTTAT CTGGTGGCCA AAAAAAGAAC AGTTGCATTT GCAAAGATAA CTTTCAAGAA 241 AACTCACATA TTGCTTCTTG ATGAGCCATC AAATCACTTG GATCTGGACG CTGTGGAAGC 301 CTTGATACAA GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTCAGAC ACGATGAACA 361 TTTAATATCT GGCGCTGTTG ATCAACTCTG GGCTGTCTCT GAGGGCAGAT TGACGCCTTT 421 TGACGGGACA TTCCAAGATT ACAAGAAAAT ATTGCAATCA TAAACACTTC TGCTGCTTTC 481 TGAAGTGAAC GAACTATAAT TAGTTACTTA TGGCCTACAC CCCTACTTTT ATGC Predicted gene structure (within gDNA segment 26757 to 29667): Exon 1 27295 27312 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 27313 27635 ( 323 n); Pd: 0.999 (s: 0), Pa: 0.993 (s: 0.98) Exon 2 27636 27722 ( 87 n); cDNA 19 105 ( 87 n); score: 0.989 Intron 2 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 3 27952 28039 ( 88 n); cDNA 106 193 ( 88 n); score: 0.989 Intron 3 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 0.89) Exon 4 28322 28407 ( 86 n); cDNA 194 280 ( 87 n); score: 0.924 Intron 4 28408 28703 ( 296 n); Pd: 0.999 (s: 0.96), Pa: 0.785 (s: 1.00) Exon 5 28704 28766 ( 63 n); cDNA 281 343 ( 63 n); score: 1.000 Intron 5 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 0.94) Exon 6 28867 29057 ( 191 n); cDNA 344 534 ( 191 n); score: 0.974 MATCH C08SLm0006K11.1+ SGN-E551023+ 0.974 533 0.998 C PGS_C08SLm0006K11.1+_SGN-E551023+ (27295 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) Alignment (genomic DNA sequence = upper lines): GTTTTCCGCT CTGCTAAGGT AAACTTTATT TGGCAAAAAC TTACGAGATT TTGTGGGTTT 27354 |||||||||| |||||||| GTTTTCCGCT CTGCTAAG.. .......... .......... .......... .......... 18 TTTTTTATAA AAAAAAAATC ACTTCCAATG TCTACTAGTT CTGTCCTTCA CACCATATAT 27414 .......... .......... .......... .......... .......... .......... 18 CAATATTGTT CTGGTCAATT TGTGTTTCAG CCGTACGTTC TCTCATTGCA ATTCCTGTCA 27474 .......... .......... .......... .......... .......... .......... 18 CCTTTTAGTT ATTAAAAGTC TATAGACTAA TGATTCTGTA TGAGCAAATG CTAGTGGTGT 27534 .......... .......... .......... .......... .......... .......... 18 TCTTTTGACC TTATAATTAT TTGTGCAGGC AAATGTTTCA TTTTGCTCTA TTCAGTTACT 27594 .......... .......... .......... .......... .......... .......... 18 TGATCTTAAT GCATTCTAAA TGCTCTTCAC TTTTTGTTTA GGTCCGTATT GCTGTATTTA 27654 ||||||||| | |||||||| .......... .......... .......... .......... .GTCCGTATT GTTGTATTTA 37 GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 27714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 97 GCTTTCCAGT AAGTTCTCCT AATCAATGAT GTATTTTCTT GTAAATTCTA AAATGTATGT 27774 |||||||| GCTTTCCA.. .......... .......... .......... .......... .......... 105 GTAATAAGTT CTCTCTAAAG AAGGTGGGTC AACAGTTGAT TTTTCTGAAT TTATTTGTGT 27834 .......... .......... .......... .......... .......... .......... 105 CCGAACTCCT GATAAGACAT TTTTAAAGGT TTAATTGCTC CCTTACATCT CATATTGCCA 27894 .......... .......... .......... .......... .......... .......... 105 AAGTGAATCT GCAAGTCATC TTTTTTAATG TATTGACCTT GCTCTGGCTT CCTGCAGGGA 27954 ||| .......... .......... .......... .......... .......... .......GGA 108 GTGCCTGAAC AAAAATTACG TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 28014 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTGAAC AAAAATTACA TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 168 CTTCAGCCCA TGTACACTTT ATCTGGTATG TTAGCATTCT ACTTGTGTTT TTTTTTTTGA 28074 |||||||||| |||||||||| ||||| CTTCAGCCCA TGTACACTTT ATCTG..... .......... .......... .......... 193 TAAAGTAAAT AAATGATATT AGGAAGCATC AAGAAGATGC AAAGTCACAA AACACTATGT 28134 .......... .......... .......... .......... .......... .......... 193 GCTAGAAAGC TGCTCCAAAC AGCAATATAT GGAGCTAGCT TGGCAAAAAC TACTCTACTG 28194 .......... .......... .......... .......... .......... .......... 193 TACTAGAGAT ATACTTGTGT TCTTGTTTAG ATTACAATGA TTCAGTTCCG CCTTCTGTCA 28254 .......... .......... .......... .......... .......... .......... 193 CTTGGGGTCA AGAGTTGTGG CATAATAACT TATAGTCCAC ATTTTGGATT GATCTATGGG 28314 .......... .......... .......... .......... .......... .......... 193 ATCTCAGGTG GCC-AAAAAA GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA 28373 ||| ||| |||||| | | |||||| |||||||||| |||||||||| ||||| |||| .......GTG GCCAAAAAAA GAACAGTTGC ATTTGCAAAG ATAACTTTCA AGAAAACTCA 246 CATATTGCTT CTTGATGAGC CGTCAAATCA CTTGGTAAGT TGAATTCTAC TTGTTTTAGT 28433 |||||||||| |||||||||| | |||||||| |||| CATATTGCTT CTTGATGAGC CATCAAATCA CTTG...... .......... .......... 280 TTCTTATTCA CCATCTTTTC TTCATACATC CGTGATTTTC ATGTCTTCTT GTTGCCGAAT 28493 .......... .......... .......... .......... .......... .......... 280 AACATACTTG GTCGGAGTAA AAAGTGGAAC ATAGAATGCC CGAAAAAAAA CTGGCGCGTT 28553 .......... .......... .......... .......... .......... .......... 280 TGTGGGTTTT AGGAAGGGCC TGGTGTGGTT TCATGATTTT TTCTTGATGG CATTTAATTT 28613 .......... .......... .......... .......... .......... .......... 280 CAACAGCTAA AGCAAAGGAT GTACTTAGTG CTTCATTTAT CCAAAGCTTC TTGCATATGC 28673 .......... .......... .......... .......... .......... .......... 280 AATGGCATTA TCTAATCGAG TTCTATGCAG GATCTGGACG CTGTGGAAGC CTTGATACAA 28733 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATCTGGACG CTGTGGAAGC CTTGATACAA 310 GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTACTAT AAAACTTCTG TCAATTATTT 28793 |||||||||| |||||||||| |||||||||| ||| GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATG....... .......... .......... 343 TTTTGGCTAA ATGGTAGCAT GTTTTTGGTT TTGCTGGTGT TTAATGGGAG CTGCTACGTG 28853 .......... .......... .......... .......... .......... .......... 343 ATGTTATTTA CAGGTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG ATCAACTCTG 28913 ||||| | |||||||||| |||||||||| ||| ||||| |||||||||| .......... ...GTCAGAC ACGATGAACA TTTAATATCT GGCGCTGTTG ATCAACTCTG 390 GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 28973 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTCTCT GAGGGCAGAT TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 450 ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 29033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 510 TGGCCTAAAC CCCTACTTTT ATGC 29057 ||||||| || |||||||||| |||| TGGCCTACAC CCCTACTTTT ATGC 534 hqPGS_C08SLm0006K11.1+_SGN-E551023+ (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) ******************************************************************************** EST sequence 3 +strand 534 n (File: SGN-E551051+) 1 GTTTTCCGCT CTGCTAAGGT CCGTATTGCT GTATTTAGTC AGCATCATGT TGATGGGCTG 61 GATCTGTCCT CAAATCCCCT CTTATACATG ATGCGTTGCT TTCCAGGAGT GCCTGAACAA 121 AAATTACGTG GTCATCTAGG TTCATTTGGT ATAACCGGAA ATCTTGCTCT TCAGCCCATG 181 TACACTTTAT CTGGTGGCCA AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA 241 ACCTCACATA TTGCTTCTTG ATGAGCCGTC AAATCACTTG GATCTGGACG CTGTGGAAGC 301 CTTGATACAA GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTCAGTC ACGATGAACA 361 TTTAATATCT GGCAGTGTTG ATCAACTCTG GGCTGTCTCT GAGGGCAGAG TGACGCCTTT 421 TGACGGGACA TTCCAAGATT ACAAGAAAAT ATTGCAATCA TAAACACTTC TGCTGCTTTC 481 TGAAGTGAAC GAACTATAAT TAGTTACTTA TGGCCTAAAC CCCTACTTTT ATGC Predicted gene structure (within gDNA segment 26874 to 29667): Exon 1 27295 27312 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 27313 27635 ( 323 n); Pd: 0.999 (s: 0), Pa: 0.993 (s: 1.00) Exon 2 27636 27722 ( 87 n); cDNA 19 105 ( 87 n); score: 1.000 Intron 2 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 27952 28039 ( 88 n); cDNA 106 193 ( 88 n); score: 1.000 Intron 3 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 0.95) Exon 4 28322 28407 ( 86 n); cDNA 194 280 ( 87 n); score: 0.971 Intron 4 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 5 28704 28766 ( 63 n); cDNA 281 343 ( 63 n); score: 1.000 Intron 5 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 6 28867 29057 ( 191 n); cDNA 344 534 ( 191 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E551051+ 0.995 533 0.998 C PGS_C08SLm0006K11.1+_SGN-E551051+ (27295 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) Alignment (genomic DNA sequence = upper lines): GTTTTCCGCT CTGCTAAGGT AAACTTTATT TGGCAAAAAC TTACGAGATT TTGTGGGTTT 27354 |||||||||| |||||||| GTTTTCCGCT CTGCTAAG.. .......... .......... .......... .......... 18 TTTTTTATAA AAAAAAAATC ACTTCCAATG TCTACTAGTT CTGTCCTTCA CACCATATAT 27414 .......... .......... .......... .......... .......... .......... 18 CAATATTGTT CTGGTCAATT TGTGTTTCAG CCGTACGTTC TCTCATTGCA ATTCCTGTCA 27474 .......... .......... .......... .......... .......... .......... 18 CCTTTTAGTT ATTAAAAGTC TATAGACTAA TGATTCTGTA TGAGCAAATG CTAGTGGTGT 27534 .......... .......... .......... .......... .......... .......... 18 TCTTTTGACC TTATAATTAT TTGTGCAGGC AAATGTTTCA TTTTGCTCTA TTCAGTTACT 27594 .......... .......... .......... .......... .......... .......... 18 TGATCTTAAT GCATTCTAAA TGCTCTTCAC TTTTTGTTTA GGTCCGTATT GCTGTATTTA 27654 ||||||||| |||||||||| .......... .......... .......... .......... .GTCCGTATT GCTGTATTTA 37 GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 27714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 97 GCTTTCCAGT AAGTTCTCCT AATCAATGAT GTATTTTCTT GTAAATTCTA AAATGTATGT 27774 |||||||| GCTTTCCA.. .......... .......... .......... .......... .......... 105 GTAATAAGTT CTCTCTAAAG AAGGTGGGTC AACAGTTGAT TTTTCTGAAT TTATTTGTGT 27834 .......... .......... .......... .......... .......... .......... 105 CCGAACTCCT GATAAGACAT TTTTAAAGGT TTAATTGCTC CCTTACATCT CATATTGCCA 27894 .......... .......... .......... .......... .......... .......... 105 AAGTGAATCT GCAAGTCATC TTTTTTAATG TATTGACCTT GCTCTGGCTT CCTGCAGGGA 27954 ||| .......... .......... .......... .......... .......... .......GGA 108 GTGCCTGAAC AAAAATTACG TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 28014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTGAAC AAAAATTACG TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 168 CTTCAGCCCA TGTACACTTT ATCTGGTATG TTAGCATTCT ACTTGTGTTT TTTTTTTTGA 28074 |||||||||| |||||||||| ||||| CTTCAGCCCA TGTACACTTT ATCTG..... .......... .......... .......... 193 TAAAGTAAAT AAATGATATT AGGAAGCATC AAGAAGATGC AAAGTCACAA AACACTATGT 28134 .......... .......... .......... .......... .......... .......... 193 GCTAGAAAGC TGCTCCAAAC AGCAATATAT GGAGCTAGCT TGGCAAAAAC TACTCTACTG 28194 .......... .......... .......... .......... .......... .......... 193 TACTAGAGAT ATACTTGTGT TCTTGTTTAG ATTACAATGA TTCAGTTCCG CCTTCTGTCA 28254 .......... .......... .......... .......... .......... .......... 193 CTTGGGGTCA AGAGTTGTGG CATAATAACT TATAGTCCAC ATTTTGGATT GATCTATGGG 28314 .......... .......... .......... .......... .......... .......... 193 ATCTCAGGTG GCC-AAAAAA GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA 28373 ||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG GCCAAAAAAA GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA 246 CATATTGCTT CTTGATGAGC CGTCAAATCA CTTGGTAAGT TGAATTCTAC TTGTTTTAGT 28433 |||||||||| |||||||||| |||||||||| |||| CATATTGCTT CTTGATGAGC CGTCAAATCA CTTG...... .......... .......... 280 TTCTTATTCA CCATCTTTTC TTCATACATC CGTGATTTTC ATGTCTTCTT GTTGCCGAAT 28493 .......... .......... .......... .......... .......... .......... 280 AACATACTTG GTCGGAGTAA AAAGTGGAAC ATAGAATGCC CGAAAAAAAA CTGGCGCGTT 28553 .......... .......... .......... .......... .......... .......... 280 TGTGGGTTTT AGGAAGGGCC TGGTGTGGTT TCATGATTTT TTCTTGATGG CATTTAATTT 28613 .......... .......... .......... .......... .......... .......... 280 CAACAGCTAA AGCAAAGGAT GTACTTAGTG CTTCATTTAT CCAAAGCTTC TTGCATATGC 28673 .......... .......... .......... .......... .......... .......... 280 AATGGCATTA TCTAATCGAG TTCTATGCAG GATCTGGACG CTGTGGAAGC CTTGATACAA 28733 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATCTGGACG CTGTGGAAGC CTTGATACAA 310 GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTACTAT AAAACTTCTG TCAATTATTT 28793 |||||||||| |||||||||| |||||||||| ||| GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATG....... .......... .......... 343 TTTTGGCTAA ATGGTAGCAT GTTTTTGGTT TTGCTGGTGT TTAATGGGAG CTGCTACGTG 28853 .......... .......... .......... .......... .......... .......... 343 ATGTTATTTA CAGGTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG ATCAACTCTG 28913 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG ATCAACTCTG 390 GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 28973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 450 ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 29033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 510 TGGCCTAAAC CCCTACTTTT ATGC 29057 |||||||||| |||||||||| |||| TGGCCTAAAC CCCTACTTTT ATGC 534 hqPGS_C08SLm0006K11.1+_SGN-E551051+ (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) ******************************************************************************** EST sequence 4 +strand 534 n (File: SGN-E551052+) 1 GTTTTCCGCT CTGCTAAGGT CCGTATTGCT GTATTTAGTC AGCATCATGT TGATGGGCTG 61 GATCTGTCCT CAAATCCCCT CTTATACATG ATGCGTTGCT TTCCAGGAGT GCCTGAACAA 121 AAATTACATG GTCATCTAGG TTCATTTGGT ATAACCGGAA ATCTTGCTCT TCAGCCCATG 181 TACACTTTAT CTGGTGGCCA AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA 241 ACCTCACATA TTGCTTCTTG ATGAGCCATC AAATCACTTG GATCTGGACG CTGTGGAAGC 301 CTTGATACAA GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTCAGTC ACGATGAACA 361 TTTAATATCT GGAAGTGTTG ATCAACTCTG GGCTGTCTCT GAGGGCAGAG TGACGCCTTT 421 TGACGGGACA TTCCAAGATT ACAAGAAAAT ATTGCAATCA TAAACACTTC TGCTGCTTTC 481 TGAAGTGAAC GAACTATAAT TAGTTACTTA TGGCCTACAC CCCTACTTTT ATGC Predicted gene structure (within gDNA segment 26874 to 29667): Exon 1 27295 27312 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 27313 27635 ( 323 n); Pd: 0.999 (s: 0), Pa: 0.993 (s: 1.00) Exon 2 27636 27722 ( 87 n); cDNA 19 105 ( 87 n); score: 1.000 Intron 2 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 3 27952 28039 ( 88 n); cDNA 106 193 ( 88 n); score: 0.989 Intron 3 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 0.95) Exon 4 28322 28407 ( 86 n); cDNA 194 280 ( 87 n); score: 0.959 Intron 4 28408 28703 ( 296 n); Pd: 0.999 (s: 0.98), Pa: 0.785 (s: 1.00) Exon 5 28704 28766 ( 63 n); cDNA 281 343 ( 63 n); score: 1.000 Intron 5 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 0.98) Exon 6 28867 29057 ( 191 n); cDNA 344 534 ( 191 n); score: 0.990 MATCH C08SLm0006K11.1+ SGN-E551052+ 0.987 533 0.998 C PGS_C08SLm0006K11.1+_SGN-E551052+ (27295 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) Alignment (genomic DNA sequence = upper lines): GTTTTCCGCT CTGCTAAGGT AAACTTTATT TGGCAAAAAC TTACGAGATT TTGTGGGTTT 27354 |||||||||| |||||||| GTTTTCCGCT CTGCTAAG.. .......... .......... .......... .......... 18 TTTTTTATAA AAAAAAAATC ACTTCCAATG TCTACTAGTT CTGTCCTTCA CACCATATAT 27414 .......... .......... .......... .......... .......... .......... 18 CAATATTGTT CTGGTCAATT TGTGTTTCAG CCGTACGTTC TCTCATTGCA ATTCCTGTCA 27474 .......... .......... .......... .......... .......... .......... 18 CCTTTTAGTT ATTAAAAGTC TATAGACTAA TGATTCTGTA TGAGCAAATG CTAGTGGTGT 27534 .......... .......... .......... .......... .......... .......... 18 TCTTTTGACC TTATAATTAT TTGTGCAGGC AAATGTTTCA TTTTGCTCTA TTCAGTTACT 27594 .......... .......... .......... .......... .......... .......... 18 TGATCTTAAT GCATTCTAAA TGCTCTTCAC TTTTTGTTTA GGTCCGTATT GCTGTATTTA 27654 ||||||||| |||||||||| .......... .......... .......... .......... .GTCCGTATT GCTGTATTTA 37 GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 27714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGCATCA TGTTGATGGG CTGGATCTGT CCTCAAATCC CCTCTTATAC ATGATGCGTT 97 GCTTTCCAGT AAGTTCTCCT AATCAATGAT GTATTTTCTT GTAAATTCTA AAATGTATGT 27774 |||||||| GCTTTCCA.. .......... .......... .......... .......... .......... 105 GTAATAAGTT CTCTCTAAAG AAGGTGGGTC AACAGTTGAT TTTTCTGAAT TTATTTGTGT 27834 .......... .......... .......... .......... .......... .......... 105 CCGAACTCCT GATAAGACAT TTTTAAAGGT TTAATTGCTC CCTTACATCT CATATTGCCA 27894 .......... .......... .......... .......... .......... .......... 105 AAGTGAATCT GCAAGTCATC TTTTTTAATG TATTGACCTT GCTCTGGCTT CCTGCAGGGA 27954 ||| .......... .......... .......... .......... .......... .......GGA 108 GTGCCTGAAC AAAAATTACG TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 28014 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTGAAC AAAAATTACA TGGTCATCTA GGTTCATTTG GTATAACCGG AAATCTTGCT 168 CTTCAGCCCA TGTACACTTT ATCTGGTATG TTAGCATTCT ACTTGTGTTT TTTTTTTTGA 28074 |||||||||| |||||||||| ||||| CTTCAGCCCA TGTACACTTT ATCTG..... .......... .......... .......... 193 TAAAGTAAAT AAATGATATT AGGAAGCATC AAGAAGATGC AAAGTCACAA AACACTATGT 28134 .......... .......... .......... .......... .......... .......... 193 GCTAGAAAGC TGCTCCAAAC AGCAATATAT GGAGCTAGCT TGGCAAAAAC TACTCTACTG 28194 .......... .......... .......... .......... .......... .......... 193 TACTAGAGAT ATACTTGTGT TCTTGTTTAG ATTACAATGA TTCAGTTCCG CCTTCTGTCA 28254 .......... .......... .......... .......... .......... .......... 193 CTTGGGGTCA AGAGTTGTGG CATAATAACT TATAGTCCAC ATTTTGGATT GATCTATGGG 28314 .......... .......... .......... .......... .......... .......... 193 ATCTCAGGTG GCC-AAAAAA GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA 28373 ||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG GCCAAAAAAA GCAGAGTTGC ATTTGCAAAG ATAACTTTCA AGAAACCTCA 246 CATATTGCTT CTTGATGAGC CGTCAAATCA CTTGGTAAGT TGAATTCTAC TTGTTTTAGT 28433 |||||||||| |||||||||| | |||||||| |||| CATATTGCTT CTTGATGAGC CATCAAATCA CTTG...... .......... .......... 280 TTCTTATTCA CCATCTTTTC TTCATACATC CGTGATTTTC ATGTCTTCTT GTTGCCGAAT 28493 .......... .......... .......... .......... .......... .......... 280 AACATACTTG GTCGGAGTAA AAAGTGGAAC ATAGAATGCC CGAAAAAAAA CTGGCGCGTT 28553 .......... .......... .......... .......... .......... .......... 280 TGTGGGTTTT AGGAAGGGCC TGGTGTGGTT TCATGATTTT TTCTTGATGG CATTTAATTT 28613 .......... .......... .......... .......... .......... .......... 280 CAACAGCTAA AGCAAAGGAT GTACTTAGTG CTTCATTTAT CCAAAGCTTC TTGCATATGC 28673 .......... .......... .......... .......... .......... .......... 280 AATGGCATTA TCTAATCGAG TTCTATGCAG GATCTGGACG CTGTGGAAGC CTTGATACAA 28733 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATCTGGACG CTGTGGAAGC CTTGATACAA 310 GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATGGTACTAT AAAACTTCTG TCAATTATTT 28793 |||||||||| |||||||||| |||||||||| ||| GGTCTTGTCT TGTTCCAAGG AGGCGTCCTG ATG....... .......... .......... 343 TTTTGGCTAA ATGGTAGCAT GTTTTTGGTT TTGCTGGTGT TTAATGGGAG CTGCTACGTG 28853 .......... .......... .......... .......... .......... .......... 343 ATGTTATTTA CAGGTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG ATCAACTCTG 28913 ||||||| |||||||||| |||||||||| || ||||||| |||||||||| .......... ...GTCAGTC ACGATGAACA TTTAATATCT GGAAGTGTTG ATCAACTCTG 390 GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 28973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT ACAAGAAAAT 450 ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 29033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT TAGTTACTTA 510 TGGCCTAAAC CCCTACTTTT ATGC 29057 ||||||| || |||||||||| |||| TGGCCTACAC CCCTACTTTT ATGC 534 hqPGS_C08SLm0006K11.1+_SGN-E551052+ (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) ******************************************************************************** EST sequence 65 +strand 204 n (File: SGN-E258311+) 1 TTTTCCGCTC TGCTAAGGTC CGTATTGCTG TATTTAGTCA GCATCATGTT GATGGGCTGG 61 ATCTGTCCTC AAATCCCCTC TTATACATGA TGCGTTGCTT TCCAGGAGTG CCTGAACAAA 121 AATTACGTGG TCATCTAGGT TCATTTGGTA TAACCGGAAA TCTTGCTCTT CAGCCCATGT 181 ACACTTTATC TGGTGGGCAA AAAA Predicted gene structure (within gDNA segment 26884 to 28751): Exon 1 27296 27312 ( 17 n); cDNA 1 17 ( 17 n); score: 1.000 Intron 1 27313 27635 ( 323 n); Pd: 0.999 (s: 0), Pa: 0.993 (s: 1.00) Exon 2 27636 27722 ( 87 n); cDNA 18 104 ( 87 n); score: 1.000 Intron 2 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 27952 28039 ( 88 n); cDNA 105 192 ( 88 n); score: 1.000 Intron 3 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 0) Exon 4 28322 28333 ( 12 n); cDNA 193 204 ( 12 n); score: 0.917 MATCH C08SLm0006K11.1+ SGN-E258311+ 1.000 204 1.000 C PGS_C08SLm0006K11.1+_SGN-E258311+ (27296 27312,27636 27722,27952 28039,28322 28333) Alignment (genomic DNA sequence = upper lines): TTTTCCGCTC TGCTAAGGTA AACTTTATTT GGCAAAAACT TACGAGATTT TGTGGGTTTT 27355 |||||||||| ||||||| TTTTCCGCTC TGCTAAG... .......... .......... .......... .......... 17 TTTTTATAAA AAAAAAATCA CTTCCAATGT CTACTAGTTC TGTCCTTCAC ACCATATATC 27415 .......... .......... .......... .......... .......... .......... 17 AATATTGTTC TGGTCAATTT GTGTTTCAGC CGTACGTTCT CTCATTGCAA TTCCTGTCAC 27475 .......... .......... .......... .......... .......... .......... 17 CTTTTAGTTA TTAAAAGTCT ATAGACTAAT GATTCTGTAT GAGCAAATGC TAGTGGTGTT 27535 .......... .......... .......... .......... .......... .......... 17 CTTTTGACCT TATAATTATT TGTGCAGGCA AATGTTTCAT TTTGCTCTAT TCAGTTACTT 27595 .......... .......... .......... .......... .......... .......... 17 GATCTTAATG CATTCTAAAT GCTCTTCACT TTTTGTTTAG GTCCGTATTG CTGTATTTAG 27655 |||||||||| |||||||||| .......... .......... .......... .......... GTCCGTATTG CTGTATTTAG 37 TCAGCATCAT GTTGATGGGC TGGATCTGTC CTCAAATCCC CTCTTATACA TGATGCGTTG 27715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCATCAT GTTGATGGGC TGGATCTGTC CTCAAATCCC CTCTTATACA TGATGCGTTG 97 CTTTCCAGTA AGTTCTCCTA ATCAATGATG TATTTTCTTG TAAATTCTAA AATGTATGTG 27775 ||||||| CTTTCCA... .......... .......... .......... .......... .......... 104 TAATAAGTTC TCTCTAAAGA AGGTGGGTCA ACAGTTGATT TTTCTGAATT TATTTGTGTC 27835 .......... .......... .......... .......... .......... .......... 104 CGAACTCCTG ATAAGACATT TTTAAAGGTT TAATTGCTCC CTTACATCTC ATATTGCCAA 27895 .......... .......... .......... .......... .......... .......... 104 AGTGAATCTG CAAGTCATCT TTTTTAATGT ATTGACCTTG CTCTGGCTTC CTGCAGGGAG 27955 |||| .......... .......... .......... .......... .......... ......GGAG 108 TGCCTGAACA AAAATTACGT GGTCATCTAG GTTCATTTGG TATAACCGGA AATCTTGCTC 28015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGAACA AAAATTACGT GGTCATCTAG GTTCATTTGG TATAACCGGA AATCTTGCTC 168 TTCAGCCCAT GTACACTTTA TCTGGTATGT TAGCATTCTA CTTGTGTTTT TTTTTTTGAT 28075 |||||||||| |||||||||| |||| TTCAGCCCAT GTACACTTTA TCTG...... .......... .......... .......... 192 AAAGTAAATA AATGATATTA GGAAGCATCA AGAAGATGCA AAGTCACAAA ACACTATGTG 28135 .......... .......... .......... .......... .......... .......... 192 CTAGAAAGCT GCTCCAAACA GCAATATATG GAGCTAGCTT GGCAAAAACT ACTCTACTGT 28195 .......... .......... .......... .......... .......... .......... 192 ACTAGAGATA TACTTGTGTT CTTGTTTAGA TTACAATGAT TCAGTTCCGC CTTCTGTCAC 28255 .......... .......... .......... .......... .......... .......... 192 TTGGGGTCAA GAGTTGTGGC ATAATAACTT ATAGTCCACA TTTTGGATTG ATCTATGGGA 28315 .......... .......... .......... .......... .......... .......... 192 TCTCAGGTGG CCAAAAAA 28333 |||| ||||||| ......GTGG GCAAAAAA 204 hqPGS_C08SLm0006K11.1+_SGN-E258311+ (27636 27722,27952 28039,28322 28333) ******************************************************************************** EST sequence 11 +strand 602 n (File: SGN-E551987+) 1 TCTAGGTTCA TTTGGTATAA CCGGAAATCT TGCTCTTCAG CCCATGTACA CTTTATCTGG 61 TGGCCAAAAA AGCAGAGTTG CATTTGCAAA GATAACTTTC AAGAAACCTC ACATATTGCT 121 TCTTGATGAG CCGTCAAATC ACTTGGATCT GGACGCTGTG GAAGCCTTGA TACAAGGTCT 181 TGTCTTGTTC CAAGGAGGCG TCCTGATGGT CAGTCACGAT GAACATTTAA TATCTGGCAG 241 TGTTGATCAA CTCTGGGCTG TCTCTGAGGG CAGAGTGACG CCTTTTGACG GGACATTCCA 301 AGATTACAAG AAAATATTGC AATCATAAAC ACTTCTGCTG CTTTCTGAAG TGAACGAACT 361 ATAATTAGTT ACTTATGGCC TAAACCCCTA CTTTTATGCA GAGACCACAT GTTCGATGTA 421 AAATTTCGAA ACCAAATTCT GAAGAATGTT CTAAAACAAA TAGTGATTTT CTACTCCTAA 481 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAGAGGAA AAAAAAAAAA AAAAANNNNN NCTGGGGGGG GGGGCCCCCC CCCCCCCCCC 601 CC Predicted gene structure (within gDNA segment 27381 to 30977): Exon 1 27981 28039 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 28322 28407 ( 86 n); cDNA 60 145 ( 86 n); score: 1.000 Intron 2 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 28704 28766 ( 63 n); cDNA 146 208 ( 63 n); score: 1.000 Intron 3 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 4 28867 29137 ( 271 n); cDNA 209 479 ( 271 n); score: 1.000 PPA cDNA 552 566 MATCH C08SLm0006K11.1+ SGN-E551987+ 1.000 479 0.796 C PGS_C08SLm0006K11.1+_SGN-E551987+ (27981 28039,28322 28407,28704 28766,28867 29137) Alignment (genomic DNA sequence = upper lines): TCTAGGTTCA TTTGGTATAA CCGGAAATCT TGCTCTTCAG CCCATGTACA CTTTATCTGG 28040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTAGGTTCA TTTGGTATAA CCGGAAATCT TGCTCTTCAG CCCATGTACA CTTTATCTG. 59 TATGTTAGCA TTCTACTTGT GTTTTTTTTT TTGATAAAGT AAATAAATGA TATTAGGAAG 28100 .......... .......... .......... .......... .......... .......... 59 CATCAAGAAG ATGCAAAGTC ACAAAACACT ATGTGCTAGA AAGCTGCTCC AAACAGCAAT 28160 .......... .......... .......... .......... .......... .......... 59 ATATGGAGCT AGCTTGGCAA AAACTACTCT ACTGTACTAG AGATATACTT GTGTTCTTGT 28220 .......... .......... .......... .......... .......... .......... 59 TTAGATTACA ATGATTCAGT TCCGCCTTCT GTCACTTGGG GTCAAGAGTT GTGGCATAAT 28280 .......... .......... .......... .......... .......... .......... 59 AACTTATAGT CCACATTTTG GATTGATCTA TGGGATCTCA GGTGGCCAAA AAAGCAGAGT 28340 ||||||||| |||||||||| .......... .......... .......... .......... .GTGGCCAAA AAAGCAGAGT 78 TGCATTTGCA AAGATAACTT TCAAGAAACC TCACATATTG CTTCTTGATG AGCCGTCAAA 28400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATTTGCA AAGATAACTT TCAAGAAACC TCACATATTG CTTCTTGATG AGCCGTCAAA 138 TCACTTGGTA AGTTGAATTC TACTTGTTTT AGTTTCTTAT TCACCATCTT TTCTTCATAC 28460 ||||||| TCACTTG... .......... .......... .......... .......... .......... 145 ATCCGTGATT TTCATGTCTT CTTGTTGCCG AATAACATAC TTGGTCGGAG TAAAAAGTGG 28520 .......... .......... .......... .......... .......... .......... 145 AACATAGAAT GCCCGAAAAA AAACTGGCGC GTTTGTGGGT TTTAGGAAGG GCCTGGTGTG 28580 .......... .......... .......... .......... .......... .......... 145 GTTTCATGAT TTTTTCTTGA TGGCATTTAA TTTCAACAGC TAAAGCAAAG GATGTACTTA 28640 .......... .......... .......... .......... .......... .......... 145 GTGCTTCATT TATCCAAAGC TTCTTGCATA TGCAATGGCA TTATCTAATC GAGTTCTATG 28700 .......... .......... .......... .......... .......... .......... 145 CAGGATCTGG ACGCTGTGGA AGCCTTGATA CAAGGTCTTG TCTTGTTCCA AGGAGGCGTC 28760 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GATCTGG ACGCTGTGGA AGCCTTGATA CAAGGTCTTG TCTTGTTCCA AGGAGGCGTC 202 CTGATGGTAC TATAAAACTT CTGTCAATTA TTTTTTTGGC TAAATGGTAG CATGTTTTTG 28820 |||||| CTGATG.... .......... .......... .......... .......... .......... 208 GTTTTGCTGG TGTTTAATGG GAGCTGCTAC GTGATGTTAT TTACAGGTCA GTCACGATGA 28880 |||| |||||||||| .......... .......... .......... .......... ......GTCA GTCACGATGA 222 ACATTTAATA TCTGGCAGTG TTGATCAACT CTGGGCTGTC TCTGAGGGCA GAGTGACGCC 28940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTAATA TCTGGCAGTG TTGATCAACT CTGGGCTGTC TCTGAGGGCA GAGTGACGCC 282 TTTTGACGGG ACATTCCAAG ATTACAAGAA AATATTGCAA TCATAAACAC TTCTGCTGCT 29000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGACGGG ACATTCCAAG ATTACAAGAA AATATTGCAA TCATAAACAC TTCTGCTGCT 342 TTCTGAAGTG AACGAACTAT AATTAGTTAC TTATGGCCTA AACCCCTACT TTTATGCAGA 29060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGAAGTG AACGAACTAT AATTAGTTAC TTATGGCCTA AACCCCTACT TTTATGCAGA 402 GACCACATGT TCGATGTAAA ATTTCGAAAC CAAATTCTGA AGAATGTTCT AAAACAAATA 29120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCACATGT TCGATGTAAA ATTTCGAAAC CAAATTCTGA AGAATGTTCT AAAACAAATA 462 GTGATTTTCT ACTCCTA 29137 |||||||||| ||||||| GTGATTTTCT ACTCCTA 479 hqPGS_C08SLm0006K11.1+_SGN-E551987+ (27981 28039,28322 28407,28704 28766,28867 29137) ******************************************************************************** EST sequence 131 -strand 464 n (File: SGN-E221741-) 1 AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 61 ATGAGCCGTC AAATCACTTG GATCTGGACG CTGTGGAAGC CTTGATACAA GGTCTTGTCT 121 TGTTCCAAGG AGGCGTCCTG ATGGTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG 181 ATCAACTCTG GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT 241 ACAAGAAAAT ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT 301 TAGTTACTTA TGGCCTAAAC CCCTACTTTT ATGCAGAGAC CACATGTTCG ATGTAAAATT 361 TCGAAACCAA ATTCTGAAGA ATGTTCTAAA ACAAATAGTG ATTTTCTACT CCTACTCGCT 421 TCTATTTACA CTGTCCAAAT TGGACAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 27718 to 29922): Exon 1 28328 28407 ( 80 n); cDNA 1 80 ( 80 n); score: 1.000 Intron 1 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 2 28704 28766 ( 63 n); cDNA 81 143 ( 63 n); score: 1.000 Intron 2 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 28867 29172 ( 306 n); cDNA 144 449 ( 306 n); score: 0.997 PPA cDNA 450 464 MATCH C08SLm0006K11.1+ SGN-E221741- 0.998 449 0.968 C PGS_C08SLm0006K11.1+_SGN-E221741- (28328 28407,28704 28766,28867 29172) Alignment (genomic DNA sequence = upper lines): AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 28387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 60 ATGAGCCGTC AAATCACTTG GTAAGTTGAA TTCTACTTGT TTTAGTTTCT TATTCACCAT 28447 |||||||||| |||||||||| ATGAGCCGTC AAATCACTTG .......... .......... .......... .......... 80 CTTTTCTTCA TACATCCGTG ATTTTCATGT CTTCTTGTTG CCGAATAACA TACTTGGTCG 28507 .......... .......... .......... .......... .......... .......... 80 GAGTAAAAAG TGGAACATAG AATGCCCGAA AAAAAACTGG CGCGTTTGTG GGTTTTAGGA 28567 .......... .......... .......... .......... .......... .......... 80 AGGGCCTGGT GTGGTTTCAT GATTTTTTCT TGATGGCATT TAATTTCAAC AGCTAAAGCA 28627 .......... .......... .......... .......... .......... .......... 80 AAGGATGTAC TTAGTGCTTC ATTTATCCAA AGCTTCTTGC ATATGCAATG GCATTATCTA 28687 .......... .......... .......... .......... .......... .......... 80 ATCGAGTTCT ATGCAGGATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC TTGTCTTGTT 28747 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC TTGTCTTGTT 124 CCAAGGAGGC GTCCTGATGG TACTATAAAA CTTCTGTCAA TTATTTTTTT GGCTAAATGG 28807 |||||||||| ||||||||| CCAAGGAGGC GTCCTGATG. .......... .......... .......... .......... 143 TAGCATGTTT TTGGTTTTGC TGGTGTTTAA TGGGAGCTGC TACGTGATGT TATTTACAGG 28867 | .......... .......... .......... .......... .......... .........G 144 TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT GTCTCTGAGG 28927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT GTCTCTGAGG 204 GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG CAATCATAAA 28987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG CAATCATAAA 264 CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC CTAAACCCCT 29047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC CTAAACCCCT 324 ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC TGAAGAATGT 29107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC TGAAGAATGT 384 TCTAAAACAA ATAGTGATTT TCTACTCCTA CTTGCTTCTA TTTACACTGT CCAAATTGGA 29167 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TCTAAAACAA ATAGTGATTT TCTACTCCTA CTCGCTTCTA TTTACACTGT CCAAATTGGA 444 CAAAA 29172 ||||| CAAAA 449 hqPGS_C08SLm0006K11.1+_SGN-E221741- (28328 28407,28704 28766,28867 29172) ******************************************************************************** EST sequence 141 -strand 409 n (File: SGN-E216379-) 1 AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 61 ATGAGCCGTC AAATCACTTG GATCTGGACG CTGTGGAAGC CTTGATACAA GGTCTTGTCT 121 TGTTCCAAGG AGGCGTCCTG ATGGTCAGTC ACGATGAACA TTTAATATCT GGCAGTGTTG 181 ATCAACTCTG GGCTGTCTCT GAGGGCAGAG TGACGCCTTT TGACGGGACA TTCCAAGATT 241 ACAAGAAAAT ATTGCAATCA TAAACACTTC TGCTGCTTTC TGAAGTGAAC GAACTATAAT 301 TAGTTACTTA TGGCCTAAAC CCCTACTTTT ATGCAGAGAC CACATGTTCG ATGTAAAATT 361 TCGAAACCAA ATTCTGAAGA ATGTTCTAAA ACAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 27718 to 29858): Exon 1 28328 28407 ( 80 n); cDNA 1 80 ( 80 n); score: 1.000 Intron 1 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 2 28704 28766 ( 63 n); cDNA 81 143 ( 63 n); score: 1.000 Intron 2 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 28867 29118 ( 252 n); cDNA 144 395 ( 252 n); score: 1.000 PPA cDNA 396 409 MATCH C08SLm0006K11.1+ SGN-E216379- 1.000 395 0.966 C PGS_C08SLm0006K11.1+_SGN-E216379- (28328 28407,28704 28766,28867 29118) Alignment (genomic DNA sequence = upper lines): AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 28387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGCAG AGTTGCATTT GCAAAGATAA CTTTCAAGAA ACCTCACATA TTGCTTCTTG 60 ATGAGCCGTC AAATCACTTG GTAAGTTGAA TTCTACTTGT TTTAGTTTCT TATTCACCAT 28447 |||||||||| |||||||||| ATGAGCCGTC AAATCACTTG .......... .......... .......... .......... 80 CTTTTCTTCA TACATCCGTG ATTTTCATGT CTTCTTGTTG CCGAATAACA TACTTGGTCG 28507 .......... .......... .......... .......... .......... .......... 80 GAGTAAAAAG TGGAACATAG AATGCCCGAA AAAAAACTGG CGCGTTTGTG GGTTTTAGGA 28567 .......... .......... .......... .......... .......... .......... 80 AGGGCCTGGT GTGGTTTCAT GATTTTTTCT TGATGGCATT TAATTTCAAC AGCTAAAGCA 28627 .......... .......... .......... .......... .......... .......... 80 AAGGATGTAC TTAGTGCTTC ATTTATCCAA AGCTTCTTGC ATATGCAATG GCATTATCTA 28687 .......... .......... .......... .......... .......... .......... 80 ATCGAGTTCT ATGCAGGATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC TTGTCTTGTT 28747 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GATC TGGACGCTGT GGAAGCCTTG ATACAAGGTC TTGTCTTGTT 124 CCAAGGAGGC GTCCTGATGG TACTATAAAA CTTCTGTCAA TTATTTTTTT GGCTAAATGG 28807 |||||||||| ||||||||| CCAAGGAGGC GTCCTGATG. .......... .......... .......... .......... 143 TAGCATGTTT TTGGTTTTGC TGGTGTTTAA TGGGAGCTGC TACGTGATGT TATTTACAGG 28867 | .......... .......... .......... .......... .......... .........G 144 TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT GTCTCTGAGG 28927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTCACGA TGAACATTTA ATATCTGGCA GTGTTGATCA ACTCTGGGCT GTCTCTGAGG 204 GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG CAATCATAAA 28987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGTGAC GCCTTTTGAC GGGACATTCC AAGATTACAA GAAAATATTG CAATCATAAA 264 CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC CTAAACCCCT 29047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCTGCT GCTTTCTGAA GTGAACGAAC TATAATTAGT TACTTATGGC CTAAACCCCT 324 ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC TGAAGAATGT 29107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTATGC AGAGACCACA TGTTCGATGT AAAATTTCGA AACCAAATTC TGAAGAATGT 384 TCTAAAACAA A 29118 |||||||||| | TCTAAAACAA A 395 hqPGS_C08SLm0006K11.1+_SGN-E216379- (28328 28407,28704 28766,28867 29118) ******************************************************************************** EST sequence 35 +strand 418 n (File: SGN-E307646+) 1 AGAGTTGCAT TTGCAAAGAT AACTTTCAAG AAACCTCACA TATTGCTTCT TGATGAGCCG 61 TCAAATCACT TGGATCTGGA CGCTGTGGAA GCCTTGATAC AAGGTCTTGT CTTGTTCCAA 121 GGAGGCGTCC TGATGGTCAG TCACGATGAA CATTTAATAT CTGGCAGTGT TGATCAACTC 181 TGGGCTGTCT CTGAGGGCAG AGTGACGCCT TTTGACGGGA CATTCCAAGA TTACAAGAAA 241 ATATTGCAAT CATAAACACT TCTGCTGCTT TCTGAAGTGA ACGAACTATA ATTAGTTACT 301 TATGGCCTAA ACCCCTACTT TTATGCAGAG ACCACATGTT CGATGTAAAA TTTCGAAACC 361 AAATTCTGAA GAATGTTCTA AAACAAATAG TGATTTTCTA CTCCTAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 27736 to 29867): Exon 1 28336 28407 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000 Intron 1 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 2 28704 28766 ( 63 n); cDNA 73 135 ( 63 n); score: 1.000 Intron 2 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 28867 29137 ( 271 n); cDNA 136 406 ( 271 n); score: 1.000 PPA cDNA 407 418 MATCH C08SLm0006K11.1+ SGN-E307646+ 1.000 406 0.971 C PGS_C08SLm0006K11.1+_SGN-E307646+ (28336 28407,28704 28766,28867 29137) Alignment (genomic DNA sequence = upper lines): AGAGTTGCAT TTGCAAAGAT AACTTTCAAG AAACCTCACA TATTGCTTCT TGATGAGCCG 28395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTGCAT TTGCAAAGAT AACTTTCAAG AAACCTCACA TATTGCTTCT TGATGAGCCG 60 TCAAATCACT TGGTAAGTTG AATTCTACTT GTTTTAGTTT CTTATTCACC ATCTTTTCTT 28455 |||||||||| || TCAAATCACT TG........ .......... .......... .......... .......... 72 CATACATCCG TGATTTTCAT GTCTTCTTGT TGCCGAATAA CATACTTGGT CGGAGTAAAA 28515 .......... .......... .......... .......... .......... .......... 72 AGTGGAACAT AGAATGCCCG AAAAAAAACT GGCGCGTTTG TGGGTTTTAG GAAGGGCCTG 28575 .......... .......... .......... .......... .......... .......... 72 GTGTGGTTTC ATGATTTTTT CTTGATGGCA TTTAATTTCA ACAGCTAAAG CAAAGGATGT 28635 .......... .......... .......... .......... .......... .......... 72 ACTTAGTGCT TCATTTATCC AAAGCTTCTT GCATATGCAA TGGCATTATC TAATCGAGTT 28695 .......... .......... .......... .......... .......... .......... 72 CTATGCAGGA TCTGGACGCT GTGGAAGCCT TGATACAAGG TCTTGTCTTG TTCCAAGGAG 28755 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA TCTGGACGCT GTGGAAGCCT TGATACAAGG TCTTGTCTTG TTCCAAGGAG 124 GCGTCCTGAT GGTACTATAA AACTTCTGTC AATTATTTTT TTGGCTAAAT GGTAGCATGT 28815 |||||||||| | GCGTCCTGAT G......... .......... .......... .......... .......... 135 TTTTGGTTTT GCTGGTGTTT AATGGGAGCT GCTACGTGAT GTTATTTACA GGTCAGTCAC 28875 ||||||||| .......... .......... .......... .......... .......... .GTCAGTCAC 144 GATGAACATT TAATATCTGG CAGTGTTGAT CAACTCTGGG CTGTCTCTGA GGGCAGAGTG 28935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAACATT TAATATCTGG CAGTGTTGAT CAACTCTGGG CTGTCTCTGA GGGCAGAGTG 204 ACGCCTTTTG ACGGGACATT CCAAGATTAC AAGAAAATAT TGCAATCATA AACACTTCTG 28995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCTTTTG ACGGGACATT CCAAGATTAC AAGAAAATAT TGCAATCATA AACACTTCTG 264 CTGCTTTCTG AAGTGAACGA ACTATAATTA GTTACTTATG GCCTAAACCC CTACTTTTAT 29055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCTG AAGTGAACGA ACTATAATTA GTTACTTATG GCCTAAACCC CTACTTTTAT 324 GCAGAGACCA CATGTTCGAT GTAAAATTTC GAAACCAAAT TCTGAAGAAT GTTCTAAAAC 29115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGACCA CATGTTCGAT GTAAAATTTC GAAACCAAAT TCTGAAGAAT GTTCTAAAAC 384 AAATAGTGAT TTTCTACTCC TA 29137 |||||||||| |||||||||| || AAATAGTGAT TTTCTACTCC TA 406 hqPGS_C08SLm0006K11.1+_SGN-E307646+ (28336 28407,28704 28766,28867 29137) ******************************************************************************** EST sequence 39 +strand 621 n (File: SGN-E206171+) 1 CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 61 TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 121 ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 181 TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 241 AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 301 ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 361 AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 421 CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 481 CGCTATTATC ACTGGTGCGA CGTCAGGAAT TGGAGCGGAG ACGGCGAGAG TTCTGGCAAA 541 ACGTGGTGTT AAGCTGATTT TACCGGCGCG TAGTGTAAAA GCGGCAGAGG AAACAAAAAC 601 TCGAATCCTA TCTGAAGTGC C Predicted gene structure (within gDNA segment 44283 to 46189): Exon 1 44883 45376 ( 494 n); cDNA 1 494 ( 494 n); score: 1.000 Intron 1 45377 45452 ( 76 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 45453 45579 ( 127 n); cDNA 495 621 ( 127 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E206171+ 1.000 621 1.000 C PGS_C08SLm0006K11.1+_SGN-E206171+ (44883 45376,45453 45579) Alignment (genomic DNA sequence = upper lines): CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 44942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 60 TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 45002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 120 ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 45062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 180 TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 45122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 240 AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 45182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 300 ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 45242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 360 AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 45302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 420 CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 45362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 480 CGCTATTATC ACTGGTAAGG ATTTTCATTG AAAAAAATTG ATTAAATGAA ATTTTACCTC 45422 |||||||||| |||| CGCTATTATC ACTG...... .......... .......... .......... .......... 494 ATTTCTGATC TGAGCATGTG ACATATGCAG GTGCGACGTC AGGAATTGGA GCGGAGACGG 45482 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGCGACGTC AGGAATTGGA GCGGAGACGG 524 CGAGAGTTCT GGCAAAACGT GGTGTTAAGC TGATTTTACC GGCGCGTAGT GTAAAAGCGG 45542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAGTTCT GGCAAAACGT GGTGTTAAGC TGATTTTACC GGCGCGTAGT GTAAAAGCGG 584 CAGAGGAAAC AAAAACTCGA ATCCTATCTG AAGTGCC 45579 |||||||||| |||||||||| |||||||||| ||||||| CAGAGGAAAC AAAAACTCGA ATCCTATCTG AAGTGCC 621 hqPGS_C08SLm0006K11.1+_SGN-E206171+ (44883 45376,45453 45579) ******************************************************************************** EST sequence 64 +strand 552 n (File: SGN-E247823+) 1 GGATGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT GGGAGTGCCG TACGGAATTT 61 CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCATAAACA ACGCCGGAAA 121 ATTCGCTCAC CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA 181 CTTAGGCCAT TTCCTTTTAA CAAAGCTTTT ACTGAAGAAG ATGATCGAGA CGGCTAATGA 241 AACGGGCGTT CAAGGAAGAA TAGTGAATGT ATCCTCAAGC ATCCATGGCT GGTTTTCCGG 301 CGACTCGATT CAGTACCTCC GACTGATCAC TAAAGACAAA AGTCAATACG ATGCGACACG 361 TGCATATGCT CTCTCGAAGC TGGCTAATGT TTTGCACACC AAGGAGCTGG CTCGGGTATT 421 GAAAAAAACG GGGGCAAATG TGACAGTCAA TTGTGTTCAT CCTGGAATTG TAAGAACTAG 481 ACTCACTAGA GAACGAGAAG GCCTCGTCAC TGATCTGGTA TTCTTTTTGA CCTCAAAACT 541 CTTGAAGACT AT Predicted gene structure (within gDNA segment 44944 to 48027): Exon 1 45580 45684 ( 105 n); cDNA 1 105 ( 105 n); score: 0.962 Intron 1 45685 45794 ( 110 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 45795 45874 ( 80 n); cDNA 106 185 ( 80 n); score: 1.000 Intron 2 45875 45982 ( 108 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 45983 46139 ( 157 n); cDNA 186 342 ( 157 n); score: 1.000 Intron 3 46140 46780 ( 641 n); Pd: 0.994 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 46781 46862 ( 82 n); cDNA 343 424 ( 82 n); score: 1.000 Intron 4 46863 47055 ( 193 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 47056 47143 ( 88 n); cDNA 425 512 ( 88 n); score: 1.000 Intron 5 47144 47377 ( 234 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 47378 47417 ( 40 n); cDNA 513 552 ( 40 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E247823+ 0.992 552 1.000 C PGS_C08SLm0006K11.1+_SGN-E247823+ (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47417) Alignment (genomic DNA sequence = upper lines): GGAGGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT CTGAGTTCCG TACGGAATTT 45639 ||| |||||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||| GGATGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT GGGAGTGCCG TACGGAATTT 60 CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCATGTAAA GCTTCATTCA 45699 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCAT..... .......... 105 CTATAATTAA CCTCTTTAGT TCCGATCAGC TGTGTATATT AGTGATTAGT TTTCTAATTT 45759 .......... .......... .......... .......... .......... .......... 105 TATTTAGAAG TCACGTTTTA TCTGTTTGAT TGCAGAAACA ACGCCGGAAA ATTCGCTCAC 45819 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAACA ACGCCGGAAA ATTCGCTCAC 130 CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA CTTAGGTAAA 45879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA CTTAG..... 185 TTTTCAACTG TTTTCTCTCT CGTTTACATG CATGTGAAAA AGTTTTTTGA TACCGATTAA 45939 .......... .......... .......... .......... .......... .......... 185 ATTAATCATT CATTTTTTAA AATTTATGTG TGCCAAACTT CAGGCCATTT CCTTTTAACA 45999 ||||||| |||||||||| .......... .......... .......... .......... ...GCCATTT CCTTTTAACA 202 AAGCTTTTAC TGAAGAAGAT GATCGAGACG GCTAATGAAA CGGGCGTTCA AGGAAGAATA 46059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTTAC TGAAGAAGAT GATCGAGACG GCTAATGAAA CGGGCGTTCA AGGAAGAATA 262 GTGAATGTAT CCTCAAGCAT CCATGGCTGG TTTTCCGGCG ACTCGATTCA GTACCTCCGA 46119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGTAT CCTCAAGCAT CCATGGCTGG TTTTCCGGCG ACTCGATTCA GTACCTCCGA 322 CTGATCACTA AAGACAAAAG GTGAACTTTA TTCATTATTA TCTCTTCCGT AACCGTTTTG 46179 |||||||||| |||||||||| CTGATCACTA AAGACAAAAG .......... .......... .......... .......... 342 AAAAATCGGG GAAAAGTACA ATGCGTTACT TTCATAGGAC TTTGTACTGA AATAAATGCA 46239 .......... .......... .......... .......... .......... .......... 342 TTATTGGTAG AAGATAATAT AGGATTTCAA AGTATAATAT ATATTCGTGT ATTCACTAGT 46299 .......... .......... .......... .......... .......... .......... 342 ATTTCTGAAA ATAAAATATA ATATTTGTAT ATTGAAAGAC GTTTTTATAA TATTATATAT 46359 .......... .......... .......... .......... .......... .......... 342 ACACGGACTA CTGGCCTCTT GCAATTTTTT ATTATCTGGA TTTAAGATTT GACTATGTAA 46419 .......... .......... .......... .......... .......... .......... 342 AAAATTCGCA AATTATTTGA AAGTTAAATT TATATCTACT ATCGTCATTG TATTAAATTA 46479 .......... .......... .......... .......... .......... .......... 342 AATCTGAATG GATTTAGACT AAAATATATG AGGTGGTGTT CAACCATGAT TTGTTAGTAA 46539 .......... .......... .......... .......... .......... .......... 342 ACTTCAACTG ACTTAACAAA AAGACGTAGT TAATTATGCA CAGTCGAAAC TTAAAGTAGG 46599 .......... .......... .......... .......... .......... .......... 342 GTTAGATTTA TATCTCATTT TTGAGCTTTA AACGACCGAT TTTTTTTAAA AAATCATTTC 46659 .......... .......... .......... .......... .......... .......... 342 ATTATGAATA CAAATTTAAT CGAGTAATAA ATTAAAATTA AAAAAAACTA TTGGAAAAGA 46719 .......... .......... .......... .......... .......... .......... 342 AGTAAACATA ATTAGCTTGA TTTAATTGTG AAAGAGAGTA ATTTGTCTTG TTATTGGACA 46779 .......... .......... .......... .......... .......... .......... 342 GTCAATACGA TGCGACACGT GCATATGCTC TCTCGAAGCT GGCTAATGTT TTGCACACCA 46839 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TCAATACGA TGCGACACGT GCATATGCTC TCTCGAAGCT GGCTAATGTT TTGCACACCA 401 AGGAGCTGGC TCGGGTATTG AAAGTAAGTC CAAAATTTTC TCTCTCCTTT TTTTTTAAAA 46899 |||||||||| |||||||||| ||| AGGAGCTGGC TCGGGTATTG AAA....... .......... .......... .......... 424 AAAGAAAAAG CTTTTCGAAA AAAATGTTAT TTATTGATTT AGGAAAAAGT GAAATTTGTT 46959 .......... .......... .......... .......... .......... .......... 424 GGCTTGCTCC TGATTCATTA GAAGATTGAA TTATTTGTTT GCGTTAAGAT ACTAGAAATT 47019 .......... .......... .......... .......... .......... .......... 424 AAATTTAGAT GTCTTTTTGT CTTTTAAATG TTGCAGAAAA CGGGGGCAAA TGTGACAGTC 47079 |||| |||||||||| |||||||||| .......... .......... .......... ......AAAA CGGGGGCAAA TGTGACAGTC 448 AATTGTGTTC ATCCTGGAAT TGTAAGAACT AGACTCACTA GAGAACGAGA AGGCCTCGTC 47139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTGTTC ATCCTGGAAT TGTAAGAACT AGACTCACTA GAGAACGAGA AGGCCTCGTC 508 ACTGGTACTT CTTTTTTTTT TTTCACCAAC CATTAATTAA GTTGATTAAT TTTTTTTAAG 47199 |||| ACTG...... .......... .......... .......... .......... .......... 512 TGGATTTGAT TGATCAAAAT AATTTACAAA ATCAAAGTTT ACAAAAACTA GCTAGCGTGA 47259 .......... .......... .......... .......... .......... .......... 512 TTAGATACCT CGTTTGACAA AATAAAGAAA ACAGCTTGAA TAGTGTGGTT TAAAATTTAA 47319 .......... .......... .......... .......... .......... .......... 512 AGTAAAATAT ATTATGTTCA AAATAATACC TCATGATTTT TGTTTTTTAT AAATGCAGAT 47379 || .......... .......... .......... .......... .......... ........AT 514 CTGGTATTCT TTTTGACCTC AAAACTCTTG AAGACTAT 47417 |||||||||| |||||||||| |||||||||| |||||||| CTGGTATTCT TTTTGACCTC AAAACTCTTG AAGACTAT 552 hqPGS_C08SLm0006K11.1+_SGN-E247823+ (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47417) ******************************************************************************** EST sequence 47 +strand 397 n (File: SGN-E206709+) 1 ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGT ATACTGCTTC TTCTCTTTTT 61 AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 121 CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 181 TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 241 AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 301 CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 361 ACCAAAAAAA TGCTTGAAAC GGTGAAGTAC TTGCTTG Predicted gene structure (within gDNA segment 44284 to 45890): Exon 1 44884 45280 ( 397 n); cDNA 1 397 ( 397 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E206709+ 1.000 397 1.000 C PGS_C08SLm0006K11.1+_SGN-E206709+ (44884 45280) Alignment (genomic DNA sequence = upper lines): ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGT ATACTGCTTC TTCTCTTTTT 44943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGT ATACTGCTTC TTCTCTTTTT 60 AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 45003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 120 CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 45063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 180 TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 45123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 240 AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 45183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 300 CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 45243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 360 ACCAAAAAAA TGCTTGAAAC GGTGAAGTAC TTGCTTG 45280 |||||||||| |||||||||| |||||||||| ||||||| ACCAAAAAAA TGCTTGAAAC GGTGAAGTAC TTGCTTG 397 hqPGS_C08SLm0006K11.1+_SGN-E206709+ (44884 45280) ******************************************************************************** EST sequence 41 +strand 373 n (File: SGN-E206214+) 1 ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGG GTACTGCTTC TTCTCTTTTT 61 AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 121 CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 181 TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 241 AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 301 CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 361 ACCAAAAAAA TGC Predicted gene structure (within gDNA segment 44284 to 45866): Exon 1 44884 45256 ( 373 n); cDNA 1 373 ( 373 n); score: 0.995 MATCH C08SLm0006K11.1+ SGN-E206214+ 0.995 373 1.000 C PGS_C08SLm0006K11.1+_SGN-E206214+ (44884 45256) Alignment (genomic DNA sequence = upper lines): ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGT ATACTGCTTC TTCTCTTTTT 44943 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ACAACCTCCA TAACTATTTT CTCTCTATCA GTTTCTCTGG GTACTGCTTC TTCTCTTTTT 60 AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 45003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTAGAAA AATCGCAGGC CTAGAGTTGT ACTAGTTTCG CCTTTTTGTG TTCTGAATCA 120 CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 45063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTAAAGTG TGTGAGGTTT CGGCTATCGC ATCAACAACA GTCAATAGCA ACTACTTTCT 180 TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 45123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTC GTTTTCGGTT TTCCCAATTG TTATGGTGTA TGGACCACTA GTACTGCAAA 240 AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 45183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTTTT CTGTGAAAGC AATTTCTGGA AGGAAAATCA AGCATAGTGT GTTTGTTGTA 300 CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 45243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACTACT GTAGTTACTA GTAAAAAACC ACTGTATCAC ATAGAGAGCG TGAAAAATTA 360 ACCAAAAAAA TGC 45256 |||||||||| ||| ACCAAAAAAA TGC 373 hqPGS_C08SLm0006K11.1+_SGN-E206214+ (44884 45256) ******************************************************************************** EST sequence 49 +strand 520 n (File: SGN-E233706+) 1 CGACTGATCA CTAAAGACAA AAGTCAATAC GATGCGACAC GTGCATATGC TCTCTCGAAG 61 CTGGCTAATG TTTTGCACAC CAAGGAGCTG GCTCGGGTAT TGAAAAAAAC GGGGGCAAAT 121 GTGACAGTCA ATTGTGTTCA TCCTGGAATT GTAAGAACTA GACTCACTAG AGAACGAGAA 181 GGCCTCGTCA CTGATCTGGT ATTCTTTCTG ACCTCAAAAC TCTTGAAGAC TATTCCACAG 241 GCAGCTGCAA CAACTTGCTA TGTTGCTACT CACCCAAGAC TTGCAAATGT GAGTGGAAAA 301 TATTCTGCAG ACTGTAATGA AGTTTGTTCT TCAAAGTTGG GTTCCAATTC AACAGAAGCA 361 GCACGCATAT GGTCAGCTTC AGAGATCATG GTTGCAAAAA ATTCAAATGC AAATTTAGAT 421 CCATTGGAGG CCAGCTTACT CTGACGCTCA AAGCGACTCG TTCCTTGGCT GCGGAGGATT 481 TAAAACAGGC TATAAACAGA AAATAGTTAG CTCTTATATG Predicted gene structure (within gDNA segment 45969 to 48562): Exon 1 46117 46139 ( 23 n); cDNA 1 23 ( 23 n); score: 1.000 Intron 1 46140 46780 ( 641 n); Pd: 0.994 (s: 0), Pa: 0.989 (s: 1.00) Exon 2 46781 46862 ( 82 n); cDNA 24 105 ( 82 n); score: 1.000 Intron 2 46863 47055 ( 193 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 47056 47143 ( 88 n); cDNA 106 193 ( 88 n); score: 1.000 Intron 3 47144 47377 ( 234 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 4 47378 47424 ( 47 n); cDNA 194 240 ( 47 n); score: 0.979 Intron 4 47425 47582 ( 158 n); Pd: 0.999 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 5 47583 47862 ( 280 n); cDNA 241 520 ( 280 n); score: 0.993 MATCH C08SLm0006K11.1+ SGN-E233706+ 0.996 520 1.000 C PGS_C08SLm0006K11.1+_SGN-E233706+ (46117 46139,46781 46862,47056 47143,47378 47424,47583 47862) Alignment (genomic DNA sequence = upper lines): CGACTGATCA CTAAAGACAA AAGGTGAACT TTATTCATTA TTATCTCTTC CGTAACCGTT 46176 |||||||||| |||||||||| ||| CGACTGATCA CTAAAGACAA AAG....... .......... .......... .......... 23 TTGAAAAATC GGGGAAAAGT ACAATGCGTT ACTTTCATAG GACTTTGTAC TGAAATAAAT 46236 .......... .......... .......... .......... .......... .......... 23 GCATTATTGG TAGAAGATAA TATAGGATTT CAAAGTATAA TATATATTCG TGTATTCACT 46296 .......... .......... .......... .......... .......... .......... 23 AGTATTTCTG AAAATAAAAT ATAATATTTG TATATTGAAA GACGTTTTTA TAATATTATA 46356 .......... .......... .......... .......... .......... .......... 23 TATACACGGA CTACTGGCCT CTTGCAATTT TTTATTATCT GGATTTAAGA TTTGACTATG 46416 .......... .......... .......... .......... .......... .......... 23 TAAAAAATTC GCAAATTATT TGAAAGTTAA ATTTATATCT ACTATCGTCA TTGTATTAAA 46476 .......... .......... .......... .......... .......... .......... 23 TTAAATCTGA ATGGATTTAG ACTAAAATAT ATGAGGTGGT GTTCAACCAT GATTTGTTAG 46536 .......... .......... .......... .......... .......... .......... 23 TAAACTTCAA CTGACTTAAC AAAAAGACGT AGTTAATTAT GCACAGTCGA AACTTAAAGT 46596 .......... .......... .......... .......... .......... .......... 23 AGGGTTAGAT TTATATCTCA TTTTTGAGCT TTAAACGACC GATTTTTTTT AAAAAATCAT 46656 .......... .......... .......... .......... .......... .......... 23 TTCATTATGA ATACAAATTT AATCGAGTAA TAAATTAAAA TTAAAAAAAA CTATTGGAAA 46716 .......... .......... .......... .......... .......... .......... 23 AGAAGTAAAC ATAATTAGCT TGATTTAATT GTGAAAGAGA GTAATTTGTC TTGTTATTGG 46776 .......... .......... .......... .......... .......... .......... 23 ACAGTCAATA CGATGCGACA CGTGCATATG CTCTCTCGAA GCTGGCTAAT GTTTTGCACA 46836 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCAATA CGATGCGACA CGTGCATATG CTCTCTCGAA GCTGGCTAAT GTTTTGCACA 79 CCAAGGAGCT GGCTCGGGTA TTGAAAGTAA GTCCAAAATT TTCTCTCTCC TTTTTTTTTA 46896 |||||||||| |||||||||| |||||| CCAAGGAGCT GGCTCGGGTA TTGAAA.... .......... .......... .......... 105 AAAAAAGAAA AAGCTTTTCG AAAAAAATGT TATTTATTGA TTTAGGAAAA AGTGAAATTT 46956 .......... .......... .......... .......... .......... .......... 105 GTTGGCTTGC TCCTGATTCA TTAGAAGATT GAATTATTTG TTTGCGTTAA GATACTAGAA 47016 .......... .......... .......... .......... .......... .......... 105 ATTAAATTTA GATGTCTTTT TGTCTTTTAA ATGTTGCAGA AAACGGGGGC AAATGTGACA 47076 | |||||||||| |||||||||| .......... .......... .......... .........A AAACGGGGGC AAATGTGACA 126 GTCAATTGTG TTCATCCTGG AATTGTAAGA ACTAGACTCA CTAGAGAACG AGAAGGCCTC 47136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATTGTG TTCATCCTGG AATTGTAAGA ACTAGACTCA CTAGAGAACG AGAAGGCCTC 186 GTCACTGGTA CTTCTTTTTT TTTTTTCACC AACCATTAAT TAAGTTGATT AATTTTTTTT 47196 ||||||| GTCACTG... .......... .......... .......... .......... .......... 193 AAGTGGATTT GATTGATCAA AATAATTTAC AAAATCAAAG TTTACAAAAA CTAGCTAGCG 47256 .......... .......... .......... .......... .......... .......... 193 TGATTAGATA CCTCGTTTGA CAAAATAAAG AAAACAGCTT GAATAGTGTG GTTTAAAATT 47316 .......... .......... .......... .......... .......... .......... 193 TAAAGTAAAA TATATTATGT TCAAAATAAT ACCTCATGAT TTTTGTTTTT TATAAATGCA 47376 .......... .......... .......... .......... .......... .......... 193 GATCTGGTAT TCTTTTTGAC CTCAAAACTC TTGAAGACTA TTCCACAGGT TAGTTTTCTC 47436 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||| .ATCTGGTAT TCTTTCTGAC CTCAAAACTC TTGAAGACTA TTCCACAG.. .......... 240 ATACCCATCA TCTCAAAATC TGCATCCTAA GGGAATCTAA TATTTATATA GACATCAATG 47496 .......... .......... .......... .......... .......... .......... 240 GTTGATTCTG TATATTGAAA AAAACATAAC GATAAACTAT ATGCAAGCAT GATTACTTAT 47556 .......... .......... .......... .......... .......... .......... 240 ATGACGTTCA ATGATATAAA TTTCAGGCAG CTGCAACAAC TTGCTATGTT GCTACTCACC 47616 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GCAG CTGCAACAAC TTGCTATGTT GCTACTCACC 274 CAAGACTTGC AAATGTGAGT GGAAAATATT TTGCAGACTG TAATGAAGTT TGTTCTTCAA 47676 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CAAGACTTGC AAATGTGAGT GGAAAATATT CTGCAGACTG TAATGAAGTT TGTTCTTCAA 334 AGTTGGGTTC CAATTCAACA GAAGCAGCAC GCATATGGTC AGCTTCAGAG ATCATGGTTG 47736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGGGTTC CAATTCAACA GAAGCAGCAC GCATATGGTC AGCTTCAGAG ATCATGGTTG 394 CAAAAAATTC AAATGCAAAT TTAGATCCAT TGGAGGCCAG CTTACTCTGA CGCTCAAAGC 47796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAATTC AAATGCAAAT TTAGATCCAT TGGAGGCCAG CTTACTCTGA CGCTCAAAGC 454 GACTCGTTCC TTGGCTGCGG AGGATTTAAA ACAGGCTATA AACAGAAAAT AGTTAGTTCT 47856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GACTCGTTCC TTGGCTGCGG AGGATTTAAA ACAGGCTATA AACAGAAAAT AGTTAGCTCT 514 TATATG 47862 |||||| TATATG 520 hqPGS_C08SLm0006K11.1+_SGN-E233706+ (46117 46139,46781 46862,47056 47143,47378 47424,47583 47862) ******************************************************************************** EST sequence 19 +strand 446 n (File: SGN-E231704+) 1 CGACTGATCA CTAAAGACAA AAGTCAATAC GATGCGACAC GTGCATATGC TCTCTCGAAG 61 CTGGCTAATG TTTTGCACAC CAAGGAGCTG GCTCGGGTAT TGAAAAAAAC GGGGGCAAAT 121 GTGACAGTCA ATTGTGTTCA TCCTGGAATT GTAAGAACTA GACTCACTAG AGAACGAGAA 181 GGCCTCGTCA CTGATCTGGT ATTCTTTTTG ACCTCAAAAC TCTTGAAGAC TATTCCACAG 241 GCAGCTGCAA CAACTTGCTA TGTTGCTACT CACCCAAGAC TTGCAAATGT GAGTGGAAAA 301 TATTTTGCAG ACTGTAATGA AGTTTGTTCT TCAAAGTTGG GTTCCAATTC AACAGAAGCA 361 GCACGCATAT GGTCAGCTTC AGAGATCATG GTTGCAAAAA ATTCAAATGC AAATTTAGAT 421 CCATTGGAGG CCAGCTTACT CTGACG Predicted gene structure (within gDNA segment 45969 to 48398): Exon 1 46117 46139 ( 23 n); cDNA 1 23 ( 23 n); score: 1.000 Intron 1 46140 46780 ( 641 n); Pd: 0.994 (s: 0), Pa: 0.989 (s: 1.00) Exon 2 46781 46862 ( 82 n); cDNA 24 105 ( 82 n); score: 1.000 Intron 2 46863 47055 ( 193 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 47056 47143 ( 88 n); cDNA 106 193 ( 88 n); score: 1.000 Intron 3 47144 47377 ( 234 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 47378 47424 ( 47 n); cDNA 194 240 ( 47 n); score: 1.000 Intron 4 47425 47582 ( 158 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 47583 47788 ( 206 n); cDNA 241 446 ( 206 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E231704+ 1.000 446 1.000 C PGS_C08SLm0006K11.1+_SGN-E231704+ (46117 46139,46781 46862,47056 47143,47378 47424,47583 47788) Alignment (genomic DNA sequence = upper lines): CGACTGATCA CTAAAGACAA AAGGTGAACT TTATTCATTA TTATCTCTTC CGTAACCGTT 46176 |||||||||| |||||||||| ||| CGACTGATCA CTAAAGACAA AAG....... .......... .......... .......... 23 TTGAAAAATC GGGGAAAAGT ACAATGCGTT ACTTTCATAG GACTTTGTAC TGAAATAAAT 46236 .......... .......... .......... .......... .......... .......... 23 GCATTATTGG TAGAAGATAA TATAGGATTT CAAAGTATAA TATATATTCG TGTATTCACT 46296 .......... .......... .......... .......... .......... .......... 23 AGTATTTCTG AAAATAAAAT ATAATATTTG TATATTGAAA GACGTTTTTA TAATATTATA 46356 .......... .......... .......... .......... .......... .......... 23 TATACACGGA CTACTGGCCT CTTGCAATTT TTTATTATCT GGATTTAAGA TTTGACTATG 46416 .......... .......... .......... .......... .......... .......... 23 TAAAAAATTC GCAAATTATT TGAAAGTTAA ATTTATATCT ACTATCGTCA TTGTATTAAA 46476 .......... .......... .......... .......... .......... .......... 23 TTAAATCTGA ATGGATTTAG ACTAAAATAT ATGAGGTGGT GTTCAACCAT GATTTGTTAG 46536 .......... .......... .......... .......... .......... .......... 23 TAAACTTCAA CTGACTTAAC AAAAAGACGT AGTTAATTAT GCACAGTCGA AACTTAAAGT 46596 .......... .......... .......... .......... .......... .......... 23 AGGGTTAGAT TTATATCTCA TTTTTGAGCT TTAAACGACC GATTTTTTTT AAAAAATCAT 46656 .......... .......... .......... .......... .......... .......... 23 TTCATTATGA ATACAAATTT AATCGAGTAA TAAATTAAAA TTAAAAAAAA CTATTGGAAA 46716 .......... .......... .......... .......... .......... .......... 23 AGAAGTAAAC ATAATTAGCT TGATTTAATT GTGAAAGAGA GTAATTTGTC TTGTTATTGG 46776 .......... .......... .......... .......... .......... .......... 23 ACAGTCAATA CGATGCGACA CGTGCATATG CTCTCTCGAA GCTGGCTAAT GTTTTGCACA 46836 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCAATA CGATGCGACA CGTGCATATG CTCTCTCGAA GCTGGCTAAT GTTTTGCACA 79 CCAAGGAGCT GGCTCGGGTA TTGAAAGTAA GTCCAAAATT TTCTCTCTCC TTTTTTTTTA 46896 |||||||||| |||||||||| |||||| CCAAGGAGCT GGCTCGGGTA TTGAAA.... .......... .......... .......... 105 AAAAAAGAAA AAGCTTTTCG AAAAAAATGT TATTTATTGA TTTAGGAAAA AGTGAAATTT 46956 .......... .......... .......... .......... .......... .......... 105 GTTGGCTTGC TCCTGATTCA TTAGAAGATT GAATTATTTG TTTGCGTTAA GATACTAGAA 47016 .......... .......... .......... .......... .......... .......... 105 ATTAAATTTA GATGTCTTTT TGTCTTTTAA ATGTTGCAGA AAACGGGGGC AAATGTGACA 47076 | |||||||||| |||||||||| .......... .......... .......... .........A AAACGGGGGC AAATGTGACA 126 GTCAATTGTG TTCATCCTGG AATTGTAAGA ACTAGACTCA CTAGAGAACG AGAAGGCCTC 47136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATTGTG TTCATCCTGG AATTGTAAGA ACTAGACTCA CTAGAGAACG AGAAGGCCTC 186 GTCACTGGTA CTTCTTTTTT TTTTTTCACC AACCATTAAT TAAGTTGATT AATTTTTTTT 47196 ||||||| GTCACTG... .......... .......... .......... .......... .......... 193 AAGTGGATTT GATTGATCAA AATAATTTAC AAAATCAAAG TTTACAAAAA CTAGCTAGCG 47256 .......... .......... .......... .......... .......... .......... 193 TGATTAGATA CCTCGTTTGA CAAAATAAAG AAAACAGCTT GAATAGTGTG GTTTAAAATT 47316 .......... .......... .......... .......... .......... .......... 193 TAAAGTAAAA TATATTATGT TCAAAATAAT ACCTCATGAT TTTTGTTTTT TATAAATGCA 47376 .......... .......... .......... .......... .......... .......... 193 GATCTGGTAT TCTTTTTGAC CTCAAAACTC TTGAAGACTA TTCCACAGGT TAGTTTTCTC 47436 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| .ATCTGGTAT TCTTTTTGAC CTCAAAACTC TTGAAGACTA TTCCACAG.. .......... 240 ATACCCATCA TCTCAAAATC TGCATCCTAA GGGAATCTAA TATTTATATA GACATCAATG 47496 .......... .......... .......... .......... .......... .......... 240 GTTGATTCTG TATATTGAAA AAAACATAAC GATAAACTAT ATGCAAGCAT GATTACTTAT 47556 .......... .......... .......... .......... .......... .......... 240 ATGACGTTCA ATGATATAAA TTTCAGGCAG CTGCAACAAC TTGCTATGTT GCTACTCACC 47616 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GCAG CTGCAACAAC TTGCTATGTT GCTACTCACC 274 CAAGACTTGC AAATGTGAGT GGAAAATATT TTGCAGACTG TAATGAAGTT TGTTCTTCAA 47676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACTTGC AAATGTGAGT GGAAAATATT TTGCAGACTG TAATGAAGTT TGTTCTTCAA 334 AGTTGGGTTC CAATTCAACA GAAGCAGCAC GCATATGGTC AGCTTCAGAG ATCATGGTTG 47736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGGGTTC CAATTCAACA GAAGCAGCAC GCATATGGTC AGCTTCAGAG ATCATGGTTG 394 CAAAAAATTC AAATGCAAAT TTAGATCCAT TGGAGGCCAG CTTACTCTGA CG 47788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CAAAAAATTC AAATGCAAAT TTAGATCCAT TGGAGGCCAG CTTACTCTGA CG 446 hqPGS_C08SLm0006K11.1+_SGN-E231704+ (46117 46139,46781 46862,47056 47143,47378 47424,47583 47788) ******************************************************************************** EST sequence 24 +strand 588 n (File: SGN-E551400+) 1 AATTGATCTC TTCTTCGCTT CTGGAGTGAA TTTGCCTTTT TGGTTTGTAC TTGGGTTTGA 61 ATCATGTTTT TTTTAACTCT GATGCCATTG ACTTGTAGAG GTCGAAAGGA GAGCCTCTAC 121 GTGGCTTTGA AGATGAAAAG TTTTGCTTCA TCGCTTTTAG ACGAGGAGAA CGGCCAAAGC 181 AAGTTCTTCT TCAAGAATAC GGAATGCCAA TTGTTAATTT GTTTTTAGCT TGTTCCATCA 241 TTACCATTGT GAAGTGCAAA TTTTCACTTT TTATTTTTAT TTTTTATTAT CGCCATCTTC 301 TTAAAGTCTC CATTGAACTA ATTTCTTTGT TTTTCAAGCA GAGAGCCTTG GCCATTGGAT 361 AGTATGAAGT TTGAGACATT GAAGGAGCAG CATGCCAGAA GGAATCCAGA GGATTTAGAA 421 ATTGACTATG AGGACCAATT CATCTCAGAA GATGAGGGTA TTGAGGATGA AGTAGATCAT 481 GTCACATATG ATTCCGATGC TACAGAAACA GATGCTGTTA CTGAAAATGA TGATTGGGAG 541 GAAGAAGGTG AAGAAAGGAC CCATGCCGAT CTTGGTGGTG GTTGGGGA Predicted gene structure (within gDNA segment 53483 to 55375): Exon 1 54083 54512 ( 430 n); cDNA 1 430 ( 430 n); score: 0.998 Intron 1 54513 54607 ( 95 n); Pd: 0.992 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 54608 54765 ( 158 n); cDNA 431 588 ( 158 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E551400+ 0.998 588 1.000 C PGS_C08SLm0006K11.1+_SGN-E551400+ (54083 54512,54608 54765) Alignment (genomic DNA sequence = upper lines): AATTGATCTC TTCTTCGCTT CTGGAGTGAA TTTGCCTTTT TGGTTTGTAC TTGGGTTTGA 54142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGATCTC TTCTTCGCTT CTGGAGTGAA TTTGCCTTTT TGGTTTGTAC TTGGGTTTGA 60 ATCATGTTTT TTTTAACTCT GATGCCATTG ACTTGTAGAG GTCGAAAGGA GAGCCTCTAC 54202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATGTTTT TTTTAACTCT GATGCCATTG ACTTGTAGAG GTCGAAAGGA GAGCCTCTAC 120 GTGGCTTTGA AGATGAAAAG TTTTGCTTCA TCGCTTTTAG ACGAGGAGAA CGGCCAAAGC 54262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCTTTGA AGATGAAAAG TTTTGCTTCA TCGCTTTTAG ACGAGGAGAA CGGCCAAAGC 180 AAGTTCTTCT TCAAGAATAC GGAATGCCAA TTGTTAATTT GTTTTTAGCT TGTTCCATCA 54322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCTTCT TCAAGAATAC GGAATGCCAA TTGTTAATTT GTTTTTAGCT TGTTCCATCA 240 TTACCATTGT GAAGTGCAAA TTTTCACTTT TTATTTTTAT TTTTTATTTT CGCCATCTTC 54382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTACCATTGT GAAGTGCAAA TTTTCACTTT TTATTTTTAT TTTTTATTAT CGCCATCTTC 300 TTAAAGTCTC CATTGAACTA ATTTCTTTGT TTTTCAAGCA GAGAGCCTTG GCCATTGGAT 54442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGTCTC CATTGAACTA ATTTCTTTGT TTTTCAAGCA GAGAGCCTTG GCCATTGGAT 360 AGTATGAAGT TTGAGACATT GAAGGAGCAG CATGCCAGAA GGAATCCAGA GGATTTAGAA 54502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGAAGT TTGAGACATT GAAGGAGCAG CATGCCAGAA GGAATCCAGA GGATTTAGAA 420 ATTGACTATG GTATTTGCTA TCACTATTAA ATCTCAGTTT TGCTTTGCCA TGTTAAAACA 54562 |||||||||| ATTGACTATG .......... .......... .......... .......... .......... 430 TCTACATTCA TTTACAAAGT AGTGACATTT CTCCTTTTAT TTCAGAGGAC CAATTCATCT 54622 ||||| |||||||||| .......... .......... .......... .......... .....AGGAC CAATTCATCT 445 CAGAAGATGA GGGTATTGAG GATGAAGTAG ATCATGTCAC ATATGATTCC GATGCTACAG 54682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAGATGA GGGTATTGAG GATGAAGTAG ATCATGTCAC ATATGATTCC GATGCTACAG 505 AAACAGATGC TGTTACTGAA AATGATGATT GGGAGGAAGA AGGTGAAGAA AGGACCCATG 54742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGATGC TGTTACTGAA AATGATGATT GGGAGGAAGA AGGTGAAGAA AGGACCCATG 565 CCGATCTTGG TGGTGGTTGG GGA 54765 |||||||||| |||||||||| ||| CCGATCTTGG TGGTGGTTGG GGA 588 hqPGS_C08SLm0006K11.1+_SGN-E551400+ (54083 54512,54608 54765) ******************************************************************************** EST sequence 9 +strand 380 n (File: SGN-E272666+) 1 ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 61 TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 121 TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 181 AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 241 TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 301 TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 361 GTATGAAGTT TGAGACATTG Predicted gene structure (within gDNA segment 53484 to 55073): Exon 1 54084 54463 ( 380 n); cDNA 1 380 ( 380 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E272666+ 1.000 380 1.000 C PGS_C08SLm0006K11.1+_SGN-E272666+ (54084 54463) Alignment (genomic DNA sequence = upper lines): ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 54143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 60 TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 54203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 120 TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 54263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 180 AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 54323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 240 TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 54383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 300 TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 54443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 360 GTATGAAGTT TGAGACATTG 54463 |||||||||| |||||||||| GTATGAAGTT TGAGACATTG 380 hqPGS_C08SLm0006K11.1+_SGN-E272666+ (54084 54463) ******************************************************************************** EST sequence 91 -strand 428 n (File: SGN-E225171-) 1 CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 61 AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 121 TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 181 ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 241 GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 301 AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 361 TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TAAAAAAAAA 421 AAAAAAAA Predicted gene structure (within gDNA segment 54210 to 55991): Exon 1 54820 55244 ( 425 n); cDNA 1 425 ( 425 n); score: 0.984 MATCH C08SLm0006K11.1+ SGN-E225171- 0.984 425 0.993 C PGS_C08SLm0006K11.1+_SGN-E225171- (54820 55244) Alignment (genomic DNA sequence = upper lines): CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 54879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 60 AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 54939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 120 TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 54999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 180 ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 55059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 240 GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 55119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 300 AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 55179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 360 TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TATGACAGAG 55239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || | | | TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TAAAAAAAAA 420 GATAA 55244 | || AAAAA 425 hqPGS_C08SLm0006K11.1+_SGN-E225171- (54820 55244) ******************************************************************************** EST sequence 92 -strand 351 n (File: SGN-E225600-) 1 TGCATCATCA GGCGCGAAGA TCGCTTTGGG GTGACTTATG GCCCTTCTAA ATTTTGTTAG 61 AAAAATGGCA CTCAAGGTGT TTGGTCCATC AGTAAGAGCG CAGTGTGATG TCTGAGTTAG 121 GCACTCATCG CAGAGTTCAA ATGTCGCAAC AAACAAAAGC CTGGTAGGAG GGGCACGTCT 181 ATAATCCATC AAGTCTCAAA CTATGCTTCA CTTGCCCTCA GTTATCAAAG AAATTATTTT 241 TGTTAAAAAT AGTTTCTTGA GTAATGTAAT AAATGTATTT TCGTGTGTAC CCATTTTCTG 301 AAAAAGAAGA AAAGTGAAGT CAGATGGTTA TTCTGATTAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 54283 to 55951): Exon 1 54893 55231 ( 339 n); cDNA 1 339 ( 339 n); score: 0.997 PPA cDNA 340 351 MATCH C08SLm0006K11.1+ SGN-E225600- 0.997 339 0.966 C PGS_C08SLm0006K11.1+_SGN-E225600- (54893 55231) Alignment (genomic DNA sequence = upper lines): TGCATCATCA GGCGCGAAGA TCGCTTTGGG GTGACTTATG GCCCTTCTAA ATTTTGTTAG 54952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATCATCA GGCGCGAAGA TCGCTTTGGG GTGACTTATG GCCCTTCTAA ATTTTGTTAG 60 AAAAATGGCA CTCAAGGTGT TTGGTCCATC AGTAAGAGCG CAGTGTGATG TCTGAGTTAG 55012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA CTCAAGGTGT TTGGTCCATC AGTAAGAGCG CAGTGTGATG TCTGAGTTAG 120 GCACTCATCA CAGAGTTCAA ATGTCGCAAC AAACAAAAGC CTGGTAGGAG GGGCACGTCT 55072 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTCATCG CAGAGTTCAA ATGTCGCAAC AAACAAAAGC CTGGTAGGAG GGGCACGTCT 180 ATAATCCATC AAGTCTCAAA CTATGCTTCA CTTGCCCTCA GTTATCAAAG AAATTATTTT 55132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATCCATC AAGTCTCAAA CTATGCTTCA CTTGCCCTCA GTTATCAAAG AAATTATTTT 240 TGTTAAAAAT AGTTTCTTGA GTAATGTAAT AAATGTATTT TCGTGTGTAC CCATTTTCTG 55192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAAAAAT AGTTTCTTGA GTAATGTAAT AAATGTATTT TCGTGTGTAC CCATTTTCTG 300 AAAAAGAAGA AAAGTGAAGT CAGATGGTTA TTCTGATTA 55231 |||||||||| |||||||||| |||||||||| ||||||||| AAAAAGAAGA AAAGTGAAGT CAGATGGTTA TTCTGATTA 339 hqPGS_C08SLm0006K11.1+_SGN-E225600- (54893 55231) ******************************************************************************** EST sequence 139 -strand 450 n (File: SGN-E235244-) 1 TTGTTAGAAA AATGGCACTC AAGGTGTTTG GTCCATCAGT AAGAGCGCAG TGTGATGTCT 61 GAGTTAGGCA CTCATCACAG AGTTCAAATG TCGCAACAAA CAAAAGCCTG GTAGGAGGGG 121 CACGTCTATA ATCCATCAAG TCTCAAACTA TGCTTCACTT GCCCTCAGTT ATCAAAGAAA 181 TTATTTTTGT TAAAAATAGT TTCTTGAGTA ATGTAATAAA TGTATTTTCG TGTGGACCCA 241 TTTTCTGAAA AAGAAGAAAA GTGAAGTCAG ATGGTTATTC TGATTATGAC AAAGGATAAG 301 ATTGGGCCAA ATGGCTCAAA AAGTAGAGTT ACTGCATACA TGTGAACCAC ATATGTCTTA 361 TTCATAATTC TTGGACGGAA TCATGGAACA GTAAAAGAGT TCGAGTCACG TGCCAGCTTT 421 GTAGAAAAAA AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 54336 to 56274): Exon 1 54946 55370 ( 425 n); cDNA 1 425 ( 425 n); score: 0.988 PPA cDNA 426 450 MATCH C08SLm0006K11.1+ SGN-E235244- 0.988 425 0.944 C PGS_C08SLm0006K11.1+_SGN-E235244- (54946 55370) Alignment (genomic DNA sequence = upper lines): TTGTTAGAAA AATGGCACTC AAGGTGTTTG GTCCATCAGT AAGAGCGCAG TGTGATGTCT 55005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAGAAA AATGGCACTC AAGGTGTTTG GTCCATCAGT AAGAGCGCAG TGTGATGTCT 60 GAGTTAGGCA CTCATCACAG AGTTCAAATG TCGCAACAAA CAAAAGCCTG GTAGGAGGGG 55065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTAGGCA CTCATCACAG AGTTCAAATG TCGCAACAAA CAAAAGCCTG GTAGGAGGGG 120 CACGTCTATA ATCCATCAAG TCTCAAACTA TGCTTCACTT GCCCTCAGTT ATCAAAGAAA 55125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTCTATA ATCCATCAAG TCTCAAACTA TGCTTCACTT GCCCTCAGTT ATCAAAGAAA 180 TTATTTTTGT TAAAAATAGT TTCTTGAGTA ATGTAATAAA TGTATTTTCG TGTGTACCCA 55185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TTATTTTTGT TAAAAATAGT TTCTTGAGTA ATGTAATAAA TGTATTTTCG TGTGGACCCA 240 TTTTCTGAAA AAGAAGAAAA GTGAAGTCAG ATGGTTATTC TGATTATGAC AGAGGATAAG 55245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TTTTCTGAAA AAGAAGAAAA GTGAAGTCAG ATGGTTATTC TGATTATGAC AAAGGATAAG 300 ATTGGGCCAA ATGGCTCAAA AAGTAGAGTT ACTGCATACA TGTGAACCAC ATATGTCTTA 55305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGCCAA ATGGCTCAAA AAGTAGAGTT ACTGCATACA TGTGAACCAC ATATGTCTTA 360 TTCATAATTC TTGTACGGAA TCATGGAACA GTAAAAGAGT TCGAGTCACG TGCCAGCTTA 55365 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATAATTC TTGGACGGAA TCATGGAACA GTAAAAGAGT TCGAGTCACG TGCCAGCTTT 420 GAAGA 55370 | ||| GTAGA 425 hqPGS_C08SLm0006K11.1+_SGN-E235244- (54946 55370) ******************************************************************************** EST sequence 138 -strand 441 n (File: SGN-E234572-) 1 AAATGGCACT CAAGGTGTTT GGTCCATCAG TAAGAGCGCA GTGTGATGTC TGAGTTAGGC 61 ACTCATCACA GAGTTCAAAT GTCGCAACAA ACAAAAGCCT GGTAGGAGGG GCACGTCTAT 121 AATCCATCAA GTCTCAAACT ATGCTTCACT TGCCCTCAGT TATCAAAGAA ATTATTTTTG 181 TTAAAAATAG TTTCTTGAGT AATGTAATAA ATGTATTTTC GTGTGTACCC ATTTTCTGAA 241 AAAGAAGAAA AGTGAAGTCA GATGGTTATT CTGATTATGA CAGAGGATAA GATTGGGCCA 301 AATGGCTCAA AAAGTAGAGT TACTGCATAC ATGTGAACCA CATATGTCTT ATTCATAATT 361 CTTGTACGGA ATCATGGAAC AGTAAAAGAG TTCGAGTCAC GTGCCAGCTT AGAAGAAAAA 421 AAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 54345 to 56220): Exon 1 54955 55370 ( 416 n); cDNA 1 416 ( 416 n); score: 1.000 PPA cDNA 417 441 MATCH C08SLm0006K11.1+ SGN-E234572- 1.000 416 0.943 C PGS_C08SLm0006K11.1+_SGN-E234572- (54955 55370) Alignment (genomic DNA sequence = upper lines): AAATGGCACT CAAGGTGTTT GGTCCATCAG TAAGAGCGCA GTGTGATGTC TGAGTTAGGC 55014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGCACT CAAGGTGTTT GGTCCATCAG TAAGAGCGCA GTGTGATGTC TGAGTTAGGC 60 ACTCATCACA GAGTTCAAAT GTCGCAACAA ACAAAAGCCT GGTAGGAGGG GCACGTCTAT 55074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCATCACA GAGTTCAAAT GTCGCAACAA ACAAAAGCCT GGTAGGAGGG GCACGTCTAT 120 AATCCATCAA GTCTCAAACT ATGCTTCACT TGCCCTCAGT TATCAAAGAA ATTATTTTTG 55134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCATCAA GTCTCAAACT ATGCTTCACT TGCCCTCAGT TATCAAAGAA ATTATTTTTG 180 TTAAAAATAG TTTCTTGAGT AATGTAATAA ATGTATTTTC GTGTGTACCC ATTTTCTGAA 55194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAATAG TTTCTTGAGT AATGTAATAA ATGTATTTTC GTGTGTACCC ATTTTCTGAA 240 AAAGAAGAAA AGTGAAGTCA GATGGTTATT CTGATTATGA CAGAGGATAA GATTGGGCCA 55254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAGAAA AGTGAAGTCA GATGGTTATT CTGATTATGA CAGAGGATAA GATTGGGCCA 300 AATGGCTCAA AAAGTAGAGT TACTGCATAC ATGTGAACCA CATATGTCTT ATTCATAATT 55314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCTCAA AAAGTAGAGT TACTGCATAC ATGTGAACCA CATATGTCTT ATTCATAATT 360 CTTGTACGGA ATCATGGAAC AGTAAAAGAG TTCGAGTCAC GTGCCAGCTT AGAAGA 55370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTTGTACGGA ATCATGGAAC AGTAAAAGAG TTCGAGTCAC GTGCCAGCTT AGAAGA 416 hqPGS_C08SLm0006K11.1+_SGN-E234572- (54955 55370) ******************************************************************************** EST sequence 98 +strand 720 n (File: SGN-E389562+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA GAAAAGAAGT 541 GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG AGAAGATAAA 601 AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAGGAAACA TAGTTTTGAA 661 AATGATACAT TGAGTACTAC TACTTGTTCC CTCAATAGTA ATTTTGAAAA AGTTGATGAT Predicted gene structure (within gDNA segment 58047 to 55867): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56477 ( 494 n); cDNA 228 720 ( 493 n); score: 0.988 MATCH C08SLm0006K11.1- SGN-E389562+ 0.992 721 1.001 C PGS_C08SLm0006K11.1-_SGN-E389562+ (57447 57221,56970 56477) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 530 GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 56608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 590 AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 56548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||| AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TC-AGGAAAC 649 ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA 56488 |||||||||| |||||||||| |||||||||| |||||||||| | |||||| |||||||||| ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CCTCAATAGT AATTTTGAAA 709 AAGTTGATGA T 56477 |||||||||| | AAGTTGATGA T 720 hqPGS_C08SLm0006K11.1-_SGN-E389562+ (57447 57221,56970 56477) ******************************************************************************** EST sequence 118 +strand 719 n (File: SGN-E396035+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA GAAAAGAAGT 541 GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG AGAAGATAAA 601 AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA ATAGTTTTGA 661 AAATGATACA TTGAGTACTA CTACTTGTTT CCTCAATAGT AATTTTGAAA AAATTGGAT Predicted gene structure (within gDNA segment 58047 to 55806): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56482 ( 489 n); cDNA 228 716 ( 489 n); score: 0.990 MATCH C08SLm0006K11.1- SGN-E396035+ 0.993 716 0.996 C PGS_C08SLm0006K11.1-_SGN-E396035+ (57447 57221,56970 56482) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 530 GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 56608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 590 AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 56548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 650 ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA 56488 |||||||||| |||||||||| |||||||||| ||||||||| | |||||| |||||||||| ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTT CCTCAATAGT AATTTTGAAA 710 AAGTTG 56482 || ||| AAATTG 716 hqPGS_C08SLm0006K11.1-_SGN-E396035+ (57447 57221,56970 56482) ******************************************************************************** EST sequence 100 +strand 711 n (File: SGN-E550187+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA GAAAAGAAGT 541 GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG AGAAGAATAA 601 AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA ATAGTTTTGA 661 AAATGATACA TTGAGTACTA CTACTTNGTC CTCAAATAGT AATTTTGAAA A Predicted gene structure (within gDNA segment 58047 to 55877): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56487 ( 484 n); cDNA 228 711 ( 484 n); score: 0.992 MATCH C08SLm0006K11.1- SGN-E550187+ 0.994 711 1.000 C PGS_C08SLm0006K11.1-_SGN-E550187+ (57447 57221,56970 56487) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 530 GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 56608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 590 AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 56548 |||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAATAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 650 ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA 56488 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTNGTC CTCAAATAGT AATTTTGAAA 710 A 56487 | A 711 hqPGS_C08SLm0006K11.1-_SGN-E550187+ (57447 57221,56970 56487) ******************************************************************************** EST sequence 119 +strand 645 n (File: SGN-E396053+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA GAAAAGAAGT 541 GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG AGAAGATAAA 601 AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAG Predicted gene structure (within gDNA segment 58047 to 55943): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56553 ( 418 n); cDNA 228 645 ( 418 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E396053+ 1.000 645 1.000 C PGS_C08SLm0006K11.1-_SGN-E396053+ (57447 57221,56970 56553) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 530 GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 56608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 590 AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAG 56553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAG 645 hqPGS_C08SLm0006K11.1-_SGN-E396053+ (57447 57221,56970 56553) ******************************************************************************** EST sequence 129 +strand 528 n (File: SGN-E398601+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAGAACA AACCAAAAAG GGAGAAAT Predicted gene structure (within gDNA segment 58047 to 55853): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56671 ( 300 n); cDNA 228 528 ( 301 n); score: 0.988 MATCH C08SLm0006K11.1- SGN-E398601+ 0.993 527 0.998 C PGS_C08SLm0006K11.1-_SGN-E398601+ (57447 57221,56970 56671) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAA- GGAGAAAT 56671 |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| |||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAGAACA AACCAAAAAG GGAGAAAT 528 hqPGS_C08SLm0006K11.1-_SGN-E398601+ (57447 57221,56970 56671) ******************************************************************************** EST sequence 44 -strand 706 n (File: SGN-E396052-) 1 ATTCACTTCG GGGTAATCGT TGGTCATTAA TTGCCGGACG ATTACCTGGT CGAACAGATA 61 ATGAAATCAA GAATTATTGG AATACGCATT TGACCAAGAA GCTCAGAAGC ACAGGAATTG 121 AACCAAAACC CCACAAGAAT TTGACCAAAT TAAAGGAGAA ATCAAGAAAA CAAACCAAAA 181 AGGAGAAATC AAGAAAAGAA GTGGGGAAGA AAAGCAATGA TGAGAAGTTG AAGGGTCAAA 241 TTGCACAAGT TGAGAAGATA AAAGTATTTG CACCAAAGCC CATAAGGATT TCTTGTGGGA 301 TTTCAAGGAA CAATAGTTTT GAAAATGATA CATTGAGTAC TACTACTTGT TCCTCAAATA 361 GTAATTTTGA AAAAGTTGAT GATGGAAAAG ACAGGGAAAA AGAGGTGAAG TTATTTCCAA 421 GGGAATTAGA TTTTGATGAA TTACTTGAAG GGGGTGGATT TTATGATGAA TTTCTTATGG 481 GAGAAAGCTG CAATTTTTCA AACAAAGTGG AAATGAATGA TAATATGGTG GAAAAAGTAT 541 ATGAAGAATA TCTTCTACTT CTTTCTGAAA TTCAAGAAGA TCAAACGGAG CAAAAATTCT 601 CAATGTAAGT TTTAGTTTGG ATAGGCTTTT TATAAAGTTT GTTGATCCGA CTAATTCAAA 661 TTAACGAGTA ATGTATATTT GTTTAGTTTC TAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 57559 to 55428): Exon 1 56859 56168 ( 692 n); cDNA 1 692 ( 692 n); score: 0.999 PPA cDNA 693 706 MATCH C08SLm0006K11.1- SGN-E396052- 0.999 692 0.980 C PGS_C08SLm0006K11.1-_SGN-E396052- (56859 56168) Alignment (genomic DNA sequence = upper lines): ATTCACTTCT GGGTAATCGT TGGTCATTAA TTGCCGGACG ATTACCTGGT CGAACAGATA 56800 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCACTTCG GGGTAATCGT TGGTCATTAA TTGCCGGACG ATTACCTGGT CGAACAGATA 60 ATGAAATCAA GAATTATTGG AATACGCATT TGACCAAGAA GCTCAGAAGC ACAGGAATTG 56740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAATCAA GAATTATTGG AATACGCATT TGACCAAGAA GCTCAGAAGC ACAGGAATTG 120 AACCAAAACC CCACAAGAAT TTGACCAAAT TAAAGGAGAA ATCAAGAAAA CAAACCAAAA 56680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAAAACC CCACAAGAAT TTGACCAAAT TAAAGGAGAA ATCAAGAAAA CAAACCAAAA 180 AGGAGAAATC AAGAAAAGAA GTGGGGAAGA AAAGCAATGA TGAGAAGTTG AAGGGTCAAA 56620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAATC AAGAAAAGAA GTGGGGAAGA AAAGCAATGA TGAGAAGTTG AAGGGTCAAA 240 TTGCACAAGT TGAGAAGATA AAAGTATTTG CACCAAAGCC CATAAGGATT TCTTGTGGGA 56560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACAAGT TGAGAAGATA AAAGTATTTG CACCAAAGCC CATAAGGATT TCTTGTGGGA 300 TTTCAAGGAA CAATAGTTTT GAAAATGATA CATTGAGTAC TACTACTTGT TCCTCAAATA 56500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAAGGAA CAATAGTTTT GAAAATGATA CATTGAGTAC TACTACTTGT TCCTCAAATA 360 GTAATTTTGA AAAAGTTGAT GATGGAAAAG ACAGGGAAAA AGAGGTGAAG TTATTTCCAA 56440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATTTTGA AAAAGTTGAT GATGGAAAAG ACAGGGAAAA AGAGGTGAAG TTATTTCCAA 420 GGGAATTAGA TTTTGATGAA TTACTTGAAG GGGGTGGATT TTATGATGAA TTTCTTATGG 56380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAATTAGA TTTTGATGAA TTACTTGAAG GGGGTGGATT TTATGATGAA TTTCTTATGG 480 GAGAAAGCTG CAATTTTTCA AACAAAGTGG AAATGAATGA TAATATGGTG GAAAAAGTAT 56320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGCTG CAATTTTTCA AACAAAGTGG AAATGAATGA TAATATGGTG GAAAAAGTAT 540 ATGAAGAATA TCTTCTACTT CTTTCTGAAA TTCAAGAAGA TCAAACGGAG CAAAAATTCT 56260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGAATA TCTTCTACTT CTTTCTGAAA TTCAAGAAGA TCAAACGGAG CAAAAATTCT 600 CAATGTAAGT TTTAGTTTGG ATAGGCTTTT TATAAAGTTT GTTGATCCGA CTAATTCAAA 56200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGTAAGT TTTAGTTTGG ATAGGCTTTT TATAAAGTTT GTTGATCCGA CTAATTCAAA 660 TTAACGAGTA ATGTATATTT GTTTAGTTTC TA 56168 |||||||||| |||||||||| |||||||||| || TTAACGAGTA ATGTATATTT GTTTAGTTTC TA 692 hqPGS_C08SLm0006K11.1-_SGN-E396052- (56859 56168) ******************************************************************************** EST sequence 63 -strand 437 n (File: SGN-E396802-) 1 CCAAAGCCCA TAAGGATTTT CTTGTGGGAT TTCAAGGAAC ACTCCTTCCG AAAATGATAC 61 ATTGAGTACT ACTAAAAAAA ACATCAAATA GTAATTTTGA AAAAGTTGAT GATGGAAAAG 121 ACAGGGAAAA AGAGGTGAAG TTATTTCCAA GGGAATTAGA TTTTGATGAA TTACTTGAAG 181 GGGGTGGATT TTATGATGAA TTTCTTATGG GAGAAAGCTG CAATTTTTCA AACAAAGTGG 241 AAATGAATGA TAATATGGTG GAAAAAGTAT ATGAAGAATA TCTTCTACTT CTTTCTGAAA 301 TTCAAGAAGA TCAAACGGAG CAAAAATTCT CAATGTAAGT TTTAGTTTGG ATAGGCTTTT 361 TATAAAGTTT GTTGATCCGA CTAATTCAAA TTAACGAAGT AATGTATATT TGTTTAGTTG 421 CTAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 57197 to 55392): Exon 1 56587 56175 ( 413 n); cDNA 1 416 ( 416 n); score: 0.953 PPA cDNA 423 437 MATCH C08SLm0006K11.1- SGN-E396802- 0.953 413 0.945 C PGS_C08SLm0006K11.1-_SGN-E396802- (56587 56175) Alignment (genomic DNA sequence = upper lines): CCAAAGCCCA TAAGGAT-TT CTTGTGGGAT TTCAAGGAAC AATAGTTTTG AAAATGATAC 56529 |||||||||| ||||||| || |||||||||| |||||||||| | | || | |||||||||| CCAAAGCCCA TAAGGATTTT CTTGTGGGAT TTCAAGGAAC ACTCCTTCCG AAAATGATAC 60 ATTGAGTACT ACT-ACTTGT TCCTCAAATA GTAATTTTGA AAAAGTTGAT GATGGAAAAG 56470 |||||||||| ||| | | ||||||| |||||||||| |||||||||| |||||||||| ATTGAGTACT ACTAAAAAAA ACATCAAATA GTAATTTTGA AAAAGTTGAT GATGGAAAAG 120 ACAGGGAAAA AGAGGTGAAG TTATTTCCAA GGGAATTAGA TTTTGATGAA TTACTTGAAG 56410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGAAAA AGAGGTGAAG TTATTTCCAA GGGAATTAGA TTTTGATGAA TTACTTGAAG 180 GGGGTGGATT TTATGATGAA TTTCTTATGG GAGAAAGCTG CAATTTTTCA AACAAAGTGG 56350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGGATT TTATGATGAA TTTCTTATGG GAGAAAGCTG CAATTTTTCA AACAAAGTGG 240 AAATGAATGA TAATATGGTG GAAAAAGTAT ATGAAGAATA TCTTCTACTT CTTTCTGAAA 56290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAATGA TAATATGGTG GAAAAAGTAT ATGAAGAATA TCTTCTACTT CTTTCTGAAA 300 TTCAAGAAGA TCAAACGGAG CAAAAATTCT CAATGTAAGT TTTAGTTTGG ATAGGCTTTT 56230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGAAGA TCAAACGGAG CAAAAATTCT CAATGTAAGT TTTAGTTTGG ATAGGCTTTT 360 TATAAAGTTT GTTGATCCGA CTAATTCAAA TTAACG-AGT AATGTATATT TGTTTA 56175 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||| TATAAAGTTT GTTGATCCGA CTAATTCAAA TTAACGAAGT AATGTATATT TGTTTA 416 hqPGS_C08SLm0006K11.1-_SGN-E396802- (56587 56175) ******************************************************************************** EST sequence 101 +strand 266 n (File: SGN-E231676+) 1 GATCACTACC TTTCTCCTAA TTTTTGCATC TTCTTAGTTC TCTCTGTTCT GAAAATTTTT 61 CTTTAGAAAA AACACACACA AAAAAAAATA AAAATGGGAA GAGCACCATG TTGTGCTAAA 121 GAAGGATTGC GTAAAGGGCC ATGGTCTACT AAAGAAGATT TATTACTTAC TAATTATATC 181 AATCAATATG GTGAAGGCCA ATGGAGATCT TTGCCTAAAA ATGCTGGATT GCTTAGGTGT 241 GGGAAAAGTT GTAGATTAAG ATGGGT Predicted gene structure (within gDNA segment 58046 to 56321): Exon 1 57446 57221 ( 226 n); cDNA 1 226 ( 226 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56931 ( 40 n); cDNA 227 266 ( 40 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E231676+ 1.000 266 1.000 C PGS_C08SLm0006K11.1-_SGN-E231676+ (57446 57221,56970 56931) Alignment (genomic DNA sequence = upper lines): GATCACTACC TTTCTCCTAA TTTTTGCATC TTCTTAGTTC TCTCTGTTCT GAAAATTTTT 57387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCACTACC TTTCTCCTAA TTTTTGCATC TTCTTAGTTC TCTCTGTTCT GAAAATTTTT 60 CTTTAGAAAA AACACACACA AAAAAAAATA AAAATGGGAA GAGCACCATG TTGTGCTAAA 57327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAGAAAA AACACACACA AAAAAAAATA AAAATGGGAA GAGCACCATG TTGTGCTAAA 120 GAAGGATTGC GTAAAGGGCC ATGGTCTACT AAAGAAGATT TATTACTTAC TAATTATATC 57267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGATTGC GTAAAGGGCC ATGGTCTACT AAAGAAGATT TATTACTTAC TAATTATATC 180 AATCAATATG GTGAAGGCCA ATGGAGATCT TTGCCTAAAA ATGCTGGTAA TTTTTCTTTT 57207 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATCAATATG GTGAAGGCCA ATGGAGATCT TTGCCTAAAA ATGCTG.... .......... 226 TTCTAATTCC TTTCTCGATG TTTGATACGA TACAAGTTAT TTTTAATATA TATAGTAACA 57147 .......... .......... .......... .......... .......... .......... 226 ATAAATTTTA ATTTTCTTCT TTAAAATTTG TGTGTTTAAT ACATTATTGT TATGAAAATT 57087 .......... .......... .......... .......... .......... .......... 226 CTGTTATAGT TCTTGCTCGT TACGGAATGA AATGACTTTT GTTGTACCAT ATGTATTTAT 57027 .......... .......... .......... .......... .......... .......... 226 ATATGAGTGT ATTTATTTTC TTGCTCGTTA GCGTAATTCT ATGAAAAATA TTTCAGGATT 56967 |||| .......... .......... .......... .......... .......... ......GATT 230 GCTTAGGTGT GGGAAAAGTT GTAGATTAAG ATGGGT 56931 |||||||||| |||||||||| |||||||||| |||||| GCTTAGGTGT GGGAAAAGTT GTAGATTAAG ATGGGT 266 hqPGS_C08SLm0006K11.1-_SGN-E231676+ (57446 57221,56970 56931) ******************************************************************************** EST sequence 43 -strand 652 n (File: SGN-E396034-) 1 CAGATAATGA AATCAAGAAT TATTGGAATA CGCATTTGAC CAAGAAGCTC AGAAGCACAG 61 GAATTGAACC AAAACCCCAC AAGAATTTGA CCAAATTAAA GGAGAAATCA AGAAAACAAA 121 CCAAAAAGGA GAAATCAAGA AAAGAAGTGG GGAAGAAAAG CAATGATGAG AAGTTGAAGG 181 GTCAAATTGC ACAAGTTGAG AAGATAAAAG TATTTGCACC AAAGCCCATA AGGATTTCTT 241 GTGGGATTTC AAGGAACAAT AGTTTTGAAA ATGATACATT GAGTACTACT ACTTGTTCCT 301 CAAATAGTAA TTTTGAAAAA GTTGATGATG GAAAAGACAG GGAAAAAGAG GTGAAGTTAT 361 TTCCAAGGGA ATTAGATTTT GATGAATTAC TTGAAGGGGG TGGATTTTAT GATGAATTTC 421 TTATGGGAGA AAGCTGCAAT TTTTCAAACA AAGTGGAAAT GAATGATAAT ATGGTGGAAA 481 AAGTATATGA AGAATATCTT CTACTTCTTT CTGAAATTCA AGAAGATCAA ACGGAGCAAA 541 AATTCTCAAT GTAAGTTTTA GTTTGGATAG GCTTTTTATA AAGTTTGTTA ATCCGACTAA 601 TTCAAATTAA CGAGTAATGT ATATTTGTTA AATTTTTAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 57415 to 55347): Exon 1 56805 56177 ( 629 n); cDNA 1 629 ( 629 n); score: 0.998 PPA cDNA 638 652 MATCH C08SLm0006K11.1- SGN-E396034- 0.998 629 0.965 C PGS_C08SLm0006K11.1-_SGN-E396034- (56805 56177) Alignment (genomic DNA sequence = upper lines): CAGATAATGA AATCAAGAAT TATTGGAATA CGCATTTGAC CAAGAAGCTC AGAAGCACAG 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATAATGA AATCAAGAAT TATTGGAATA CGCATTTGAC CAAGAAGCTC AGAAGCACAG 60 GAATTGAACC AAAACCCCAC AAGAATTTGA CCAAATTAAA GGAGAAATCA AGAAAACAAA 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGAACC AAAACCCCAC AAGAATTTGA CCAAATTAAA GGAGAAATCA AGAAAACAAA 120 CCAAAAAGGA GAAATCAAGA AAAGAAGTGG GGAAGAAAAG CAATGATGAG AAGTTGAAGG 56626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAAAGGA GAAATCAAGA AAAGAAGTGG GGAAGAAAAG CAATGATGAG AAGTTGAAGG 180 GTCAAATTGC ACAAGTTGAG AAGATAAAAG TATTTGCACC AAAGCCCATA AGGATTTCTT 56566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAATTGC ACAAGTTGAG AAGATAAAAG TATTTGCACC AAAGCCCATA AGGATTTCTT 240 GTGGGATTTC AAGGAACAAT AGTTTTGAAA ATGATACATT GAGTACTACT ACTTGTTCCT 56506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGATTTC AAGGAACAAT AGTTTTGAAA ATGATACATT GAGTACTACT ACTTGTTCCT 300 CAAATAGTAA TTTTGAAAAA GTTGATGATG GAAAAGACAG GGAAAAAGAG GTGAAGTTAT 56446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGTAA TTTTGAAAAA GTTGATGATG GAAAAGACAG GGAAAAAGAG GTGAAGTTAT 360 TTCCAAGGGA ATTAGATTTT GATGAATTAC TTGAAGGGGG TGGATTTTAT GATGAATTTC 56386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAGGGA ATTAGATTTT GATGAATTAC TTGAAGGGGG TGGATTTTAT GATGAATTTC 420 TTATGGGAGA AAGCTGCAAT TTTTCAAACA AAGTGGAAAT GAATGATAAT ATGGTGGAAA 56326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGGGAGA AAGCTGCAAT TTTTCAAACA AAGTGGAAAT GAATGATAAT ATGGTGGAAA 480 AAGTATATGA AGAATATCTT CTACTTCTTT CTGAAATTCA AGAAGATCAA ACGGAGCAAA 56266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTATATGA AGAATATCTT CTACTTCTTT CTGAAATTCA AGAAGATCAA ACGGAGCAAA 540 AATTCTCAAT GTAAGTTTTA GTTTGGATAG GCTTTTTATA AAGTTTGTTG ATCCGACTAA 56206 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AATTCTCAAT GTAAGTTTTA GTTTGGATAG GCTTTTTATA AAGTTTGTTA ATCCGACTAA 600 TTCAAATTAA CGAGTAATGT ATATTTGTT 56177 |||||||||| |||||||||| ||||||||| TTCAAATTAA CGAGTAATGT ATATTTGTT 629 hqPGS_C08SLm0006K11.1-_SGN-E396034- (56805 56177) ******************************************************************************** EST sequence 10 -strand 583 n (File: SGN-E389563-) 1 GAAATCAAGA ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA 61 CCAAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 121 GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 181 GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 241 TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 301 AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 361 GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 421 GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 481 GAAGAATATC TTCGACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 541 ATGTAAGTTT TAGTATGGAT AGGCTTTTTA TAAAGTTTGT TGA Predicted gene structure (within gDNA segment 57407 to 55615): Exon 1 56797 56215 ( 583 n); cDNA 1 583 ( 583 n); score: 0.997 MATCH C08SLm0006K11.1- SGN-E389563- 0.997 583 1.000 C PGS_C08SLm0006K11.1-_SGN-E389563- (56797 56215) Alignment (genomic DNA sequence = upper lines): GAAATCAAGA ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATCAAGA ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA 60 CCAAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 120 GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 56618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 180 GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 56558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 240 TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 56498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 300 AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 56438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 360 GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 56378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 420 GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 56318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 480 GAAGAATATC TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 56258 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATATC TTCGACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 540 ATGTAAGTTT TAGTTTGGAT AGGCTTTTTA TAAAGTTTGT TGA 56215 |||||||||| |||| ||||| |||||||||| |||||||||| ||| ATGTAAGTTT TAGTATGGAT AGGCTTTTTA TAAAGTTTGT TGA 583 hqPGS_C08SLm0006K11.1-_SGN-E389563- (56797 56215) ******************************************************************************** EST sequence 14 -strand 689 n (File: SGN-E550435-) 1 CAGGGATTAA AAGAGGAAAT TTTAGTGAAG ATGAAGAAGA TCTTATAGTG AGATTACATT 61 CACTTCTGGG TAATCGTTGG TCATTAATTG CCGGACGATT ACCTGGTCGA ACAGATAATG 121 AAATCAAGAA TTATTGGAAT ACGCATTTGA CCAAGAAGCT CAGAAGCACA GGAATTGAAC 181 CCCAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 241 GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 301 GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 361 TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 421 AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 481 GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 541 GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 601 GAAGAATATC TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 661 ATGTAAGTTT TAGTATGGAT AGGCTTTTT Predicted gene structure (within gDNA segment 57526 to 55494): Exon 1 56916 56229 ( 688 n); cDNA 1 689 ( 689 n); score: 0.993 MATCH C08SLm0006K11.1- SGN-E550435- 0.993 688 0.999 C PGS_C08SLm0006K11.1-_SGN-E550435- (56916 56229) Alignment (genomic DNA sequence = upper lines): CAGGGATTAA AAGAGGAAAT TTTAGTGAAG ATGAAGAAGA TCTTATAGTG AGATTACATT 56857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGATTAA AAGAGGAAAT TTTAGTGAAG ATGAAGAAGA TCTTATAGTG AGATTACATT 60 CACTTCTGGG TAATCGTTGG TCATTAATTG CCGGACGATT ACCTGGTCGA ACAGATAATG 56797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCTGGG TAATCGTTGG TCATTAATTG CCGGACGATT ACCTGGTCGA ACAGATAATG 120 AAATCAAGAA TTATTGGAAT ACGCATTTGA CCAAGAAGCT CAGAAGCACA GGAATTGAA- 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATCAAGAA TTATTGGAAT ACGCATTTGA CCAAGAAGCT CAGAAGCACA GGAATTGAAC 180 CCAAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 56678 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAACCCC ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG 240 GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 56618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAATCAA GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT 300 GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 56558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAAGTTG AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT 360 TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 56498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGGAACA ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT 420 AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 56438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGAAA AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG 480 GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 56378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTAGATT TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA 540 GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 56318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGCTGCA ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT 600 GAAGAATATC TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 56258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATATC TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA 660 ATGTAAGTTT TAGTTTGGAT AGGCTTTTT 56229 |||||||||| |||| ||||| ||||||||| ATGTAAGTTT TAGTATGGAT AGGCTTTTT 689 hqPGS_C08SLm0006K11.1-_SGN-E550435- (56916 56229) ******************************************************************************** EST sequence 99 +strand 725 n (File: SGN-E373416+) 1 TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 61 TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 121 GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 181 ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 241 TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTCAC ATATCAATGT 301 TTTCACTGGA AGAAGGGAAC ACCATTTGCT GATGATCAAG GTATCTACAA TAGGTTGACT 361 TGGTGGGAGC AGATAGATAG TGGGAAGCAG CTTACACGCA ATAGGAAGTT TCTAACAGTT 421 GTCCCTGTGG TGCTCTACTT GATAGCCTCC CATACAACTG ATTATCAACA CCCCATGCTA 481 TTCTTCAACA CTATCGCAGT TTTTGTACTG GTCGTTGCCA AATTTCCCAA TATGCACAAG 541 GTTCGTATTT TCGGGATAAA TGCAGATCAA TGAACTTTGG TTCAACTGAA GTCATACCAC 601 AGAAAGAAGG AAAAAGAAAA GTAGTCATTG ATTTGCTTTT AAGCATCATG AGTAAAACTG 661 GGATGCCCCT GTACAGATGC AAGAACTGGA AAGGTTTTAT CATTATTTTG TAAAAGAAAT 721 CTCTT Predicted gene structure (within gDNA segment 63533 to 57418): Exon 1 62933 62649 ( 285 n); cDNA 1 285 ( 285 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 286 397 ( 112 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E373416+ 1.000 397 0.548 C PGS_C08SLm0006K11.1-_SGN-E373416+ (62933 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 62874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 60 TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 62814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 120 GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 62754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 180 ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 62694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 240 TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTATG ATTCTAATTT 62634 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTC..... .......... 285 CCTTTAATTC GGTTGGAATT GAGTAGTTCT TTGCAGTTAA ATAATGATGG GTTGCTTTAA 62574 .......... .......... .......... .......... .......... .......... 285 ACTCGTCAAA TTTTGATAAA ATTATAATCA AGTTCAGTTT TTTTTTGGTT TAAATGGGTC 62514 .......... .......... .......... .......... .......... .......... 285 TGATTAGAGG AATAGCAGTT TAAATGTTTG GTTGATTGAT ATTCTTATGA TTACATGCCT 62454 .......... .......... .......... .......... .......... .......... 285 AGTTCGTTTA GTGTTTCCTG TGTTTTTGGT ACTATGGAAT TTGGAGACTC AATTTGGAAT 62394 .......... .......... .......... .......... .......... .......... 285 TGATTTGAGC TAGGTTCAGC TTTGGGTCAT TGATCATTTC CTTATGTTCA ATTTGGAAGT 62334 .......... .......... .......... .......... .......... .......... 285 GAGAGATTCT GGGGTTGTAG CTGAAAAAGT GGTGAATTGA AATTCTTTTA GTACTAGTCT 62274 .......... .......... .......... .......... .......... .......... 285 TGATTCCTAG ATATGGTGGA AAATATTACA GCTGAGCTTT ACCTTGTGTG ATTGATTGTT 62214 .......... .......... .......... .......... .......... .......... 285 GATTTAAGGC CTAGATAGTT GGACATGCCG AATGTATCGA AAGCTATGGC CTTTTTGGTG 62154 .......... .......... .......... .......... .......... .......... 285 TCTAATATAT TTGGTTTTTC CATTTCAATC AAACTTCACT AGACATTATT GCTGTAGTCT 62094 .......... .......... .......... .......... .......... .......... 285 CATATTTGTT GAAGGTATCC TATTAGGATG GAGATTAGCC AAGGTTCCTA TATTGGTCGA 62034 .......... .......... .......... .......... .......... .......... 285 CATCTCGCGT TATAGTGTCT TTATATTGGT TTCGAGAACT TTTTCCACTT GAACTAGTTT 61974 .......... .......... .......... .......... .......... .......... 285 TTGGAGTTTA GTTGGATTCA AGACCATTTT CATGACAATT ATGATGTTTG CTGGATGTTC 61914 .......... .......... .......... .......... .......... .......... 285 CTTGTTATTT CGTTATTTGA TCACTAGCAT ACAGAGAAAC AAGTACATTT GAAACATGGG 61854 .......... .......... .......... .......... .......... .......... 285 AGATTTTTGC AGATGTGGAT GGTTAGTACT TCTATTGAGA TTGATAATGT GAAAGCTTGA 61794 .......... .......... .......... .......... .......... .......... 285 TTATATCTAT TACCTTTTTT TTGCGTCTTT TAACTCATTC TTGCAATGCT TTGCCCGTCT 61734 .......... .......... .......... .......... .......... .......... 285 CATGTGTTTT TTTAGCAATT AACTATTACA GTTTACCTAT GTTGTATGCC CTGAAAAATG 61674 .......... .......... .......... .......... .......... .......... 285 TCTGTATGCA TAATTCTTAG GCTTATCGAA TAGTCGAGGT CTAGTTGATG AGCTTTATCT 61614 .......... .......... .......... .......... .......... .......... 285 TCCTCTTTGT ACCAATTTTT TTGTTTTGTG TTTTTTTTCT GTCCTTTGTG TTATAGCATG 61554 .......... .......... .......... .......... .......... .......... 285 GGAGGAAACC TTGTTTATAT ATCTACTCTG GATTTTACCT CTTTGTGTAA GACTCTGCCT 61494 .......... .......... .......... .......... .......... .......... 285 TCTCTATAAA TATGCATTTC TTATATCAAT AATTTCCACT GGAAGAAGGG AACACAATTG 61434 .......... .......... .......... .......... .......... .......... 285 TACATACTCC AAATTTTAGG TGTCTTTACA AACGCCTTCG TATTGTCATT TATCTTCAGG 61374 | .......... .......... .......... .......... .......... .........G 286 TCACATATCA ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT 61314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACATATCA ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT 346 ACAATAGGTT GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 61263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ACAATAGGTT GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 397 hqPGS_C08SLm0006K11.1-_SGN-E373416+ (62933 62649,61374 61263) ******************************************************************************** EST sequence 120 +strand 498 n (File: SGN-E287763+) 1 TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 61 TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 121 GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 181 ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 241 TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTCAC ATATCAATGT 301 TTTCACTGGA AGAAGGGAAC ACCATTTGCT GATGATCAAG GTATCTACAA TAGGTTGACT 361 TGGTGGGAGC AGATAGATAG TGGGAAGCAG CTTACACGCA ATAGGAAGTT TCTAACAGTT 421 GTCCCTGTGG TGCTCTACTT GATAGCCTCC CATACAACTG ATTATCAACA CCCCATGCTA 481 TTCTTCAACA CTATCGCA Predicted gene structure (within gDNA segment 63533 to 59688): Exon 1 62933 62649 ( 285 n); cDNA 1 285 ( 285 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 286 397 ( 112 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E287763+ 1.000 397 0.797 C PGS_C08SLm0006K11.1-_SGN-E287763+ (62933 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 62874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTCAA ATCAAATTTG GGCGACGAAA GCTCCATTTT TTTTAACATC TTCCTATACA 60 TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 62814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATCTTA CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG 120 GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 62754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGTTCCGC CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG 180 ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 62694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACCTACA TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC 240 TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTATG ATTCTAATTT 62634 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCTCCTGGCA TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTC..... .......... 285 CCTTTAATTC GGTTGGAATT GAGTAGTTCT TTGCAGTTAA ATAATGATGG GTTGCTTTAA 62574 .......... .......... .......... .......... .......... .......... 285 ACTCGTCAAA TTTTGATAAA ATTATAATCA AGTTCAGTTT TTTTTTGGTT TAAATGGGTC 62514 .......... .......... .......... .......... .......... .......... 285 TGATTAGAGG AATAGCAGTT TAAATGTTTG GTTGATTGAT ATTCTTATGA TTACATGCCT 62454 .......... .......... .......... .......... .......... .......... 285 AGTTCGTTTA GTGTTTCCTG TGTTTTTGGT ACTATGGAAT TTGGAGACTC AATTTGGAAT 62394 .......... .......... .......... .......... .......... .......... 285 TGATTTGAGC TAGGTTCAGC TTTGGGTCAT TGATCATTTC CTTATGTTCA ATTTGGAAGT 62334 .......... .......... .......... .......... .......... .......... 285 GAGAGATTCT GGGGTTGTAG CTGAAAAAGT GGTGAATTGA AATTCTTTTA GTACTAGTCT 62274 .......... .......... .......... .......... .......... .......... 285 TGATTCCTAG ATATGGTGGA AAATATTACA GCTGAGCTTT ACCTTGTGTG ATTGATTGTT 62214 .......... .......... .......... .......... .......... .......... 285 GATTTAAGGC CTAGATAGTT GGACATGCCG AATGTATCGA AAGCTATGGC CTTTTTGGTG 62154 .......... .......... .......... .......... .......... .......... 285 TCTAATATAT TTGGTTTTTC CATTTCAATC AAACTTCACT AGACATTATT GCTGTAGTCT 62094 .......... .......... .......... .......... .......... .......... 285 CATATTTGTT GAAGGTATCC TATTAGGATG GAGATTAGCC AAGGTTCCTA TATTGGTCGA 62034 .......... .......... .......... .......... .......... .......... 285 CATCTCGCGT TATAGTGTCT TTATATTGGT TTCGAGAACT TTTTCCACTT GAACTAGTTT 61974 .......... .......... .......... .......... .......... .......... 285 TTGGAGTTTA GTTGGATTCA AGACCATTTT CATGACAATT ATGATGTTTG CTGGATGTTC 61914 .......... .......... .......... .......... .......... .......... 285 CTTGTTATTT CGTTATTTGA TCACTAGCAT ACAGAGAAAC AAGTACATTT GAAACATGGG 61854 .......... .......... .......... .......... .......... .......... 285 AGATTTTTGC AGATGTGGAT GGTTAGTACT TCTATTGAGA TTGATAATGT GAAAGCTTGA 61794 .......... .......... .......... .......... .......... .......... 285 TTATATCTAT TACCTTTTTT TTGCGTCTTT TAACTCATTC TTGCAATGCT TTGCCCGTCT 61734 .......... .......... .......... .......... .......... .......... 285 CATGTGTTTT TTTAGCAATT AACTATTACA GTTTACCTAT GTTGTATGCC CTGAAAAATG 61674 .......... .......... .......... .......... .......... .......... 285 TCTGTATGCA TAATTCTTAG GCTTATCGAA TAGTCGAGGT CTAGTTGATG AGCTTTATCT 61614 .......... .......... .......... .......... .......... .......... 285 TCCTCTTTGT ACCAATTTTT TTGTTTTGTG TTTTTTTTCT GTCCTTTGTG TTATAGCATG 61554 .......... .......... .......... .......... .......... .......... 285 GGAGGAAACC TTGTTTATAT ATCTACTCTG GATTTTACCT CTTTGTGTAA GACTCTGCCT 61494 .......... .......... .......... .......... .......... .......... 285 TCTCTATAAA TATGCATTTC TTATATCAAT AATTTCCACT GGAAGAAGGG AACACAATTG 61434 .......... .......... .......... .......... .......... .......... 285 TACATACTCC AAATTTTAGG TGTCTTTACA AACGCCTTCG TATTGTCATT TATCTTCAGG 61374 | .......... .......... .......... .......... .......... .........G 286 TCACATATCA ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT 61314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACATATCA ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT 346 ACAATAGGTT GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 61263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ACAATAGGTT GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 397 hqPGS_C08SLm0006K11.1-_SGN-E287763+ (62933 62649,61374 61263) ******************************************************************************** EST sequence 115 +strand 561 n (File: SGN-E392233+) 1 TCAATCAAAT TTGGGCGACG AAAGCTCCAT TTTTTTTACA TCTTCCTATA CATTGGATCT 61 TACTTTCATT GAATTTTCAA GAATTTATTG TATGGCAAAT TATTATGTAA CGGCGGTTCC 121 GCCGACGGAT CTGAATCGGA ATACCGAGTG GTTCACGTAT CCCGGTGTAT GGACGACCTA 181 CATCCTAATT CTATTCTTCT CATGGCTCGT TGTTCTCTCT GTATTTGGTT GCTCTCCTGG 241 CATGGCTTGG ACCATCGTCC ATCTTTCTCA TTTTCTCGTC ACATATCAAT GTTTTCACTG 301 GAAGAAGGGA ACACCATTTG CTGATGATCA AGGTATCTAC AATAGGTTGA CTTGGTGGGA 361 GCAGATAGAT AGTGGGAAGC AGCTTACACG CAATAGGAAG TTTCTAACAG TTGTCCCTGT 421 GGTGCTCTAC TTGATAGCCT CCCATACAAC TGATTATCAA CACCCCATGC TATTCGGTCG 481 GGCGCTATCG CAGTTTTTGT ACTGGTCGTT GCCAAATTTC CCAATATGCC CAAGGTTCGT 541 ATTTTCGGGA TAAATGCACA T Predicted gene structure (within gDNA segment 63544 to 58978): Exon 1 62924 62649 ( 276 n); cDNA 3 277 ( 275 n); score: 0.996 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 278 389 ( 112 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E392233+ 0.997 388 0.692 C PGS_C08SLm0006K11.1-_SGN-E392233+ (62924 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): AATCAAATTT GGGCGACGAA AGCTCCATTT TTTTTAACAT CTTCCTATAC ATTGGATCTT 62865 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AATCAAATTT GGGCGACGAA AGCTCCATTT TTTTT-ACAT CTTCCTATAC ATTGGATCTT 61 ACTTTCATTG AATTTTCAAG AATTTATTGT ATGGCAAATT ATTATGTAAC GGCGGTTCCG 62805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTCATTG AATTTTCAAG AATTTATTGT ATGGCAAATT ATTATGTAAC GGCGGTTCCG 121 CCGACGGATC TGAATCGGAA TACCGAGTGG TTCACGTATC CCGGTGTATG GACGACCTAC 62745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACGGATC TGAATCGGAA TACCGAGTGG TTCACGTATC CCGGTGTATG GACGACCTAC 181 ATCCTAATTC TATTCTTCTC ATGGCTCGTT GTTCTCTCTG TATTTGGTTG CTCTCCTGGC 62685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTAATTC TATTCTTCTC ATGGCTCGTT GTTCTCTCTG TATTTGGTTG CTCTCCTGGC 241 ATGGCTTGGA CCATCGTCCA TCTTTCTCAT TTTCTCGTAT GATTCTAATT TCCTTTAATT 62625 |||||||||| |||||||||| |||||||||| |||||| ATGGCTTGGA CCATCGTCCA TCTTTCTCAT TTTCTC.... .......... .......... 277 CGGTTGGAAT TGAGTAGTTC TTTGCAGTTA AATAATGATG GGTTGCTTTA AACTCGTCAA 62565 .......... .......... .......... .......... .......... .......... 277 ATTTTGATAA AATTATAATC AAGTTCAGTT TTTTTTTGGT TTAAATGGGT CTGATTAGAG 62505 .......... .......... .......... .......... .......... .......... 277 GAATAGCAGT TTAAATGTTT GGTTGATTGA TATTCTTATG ATTACATGCC TAGTTCGTTT 62445 .......... .......... .......... .......... .......... .......... 277 AGTGTTTCCT GTGTTTTTGG TACTATGGAA TTTGGAGACT CAATTTGGAA TTGATTTGAG 62385 .......... .......... .......... .......... .......... .......... 277 CTAGGTTCAG CTTTGGGTCA TTGATCATTT CCTTATGTTC AATTTGGAAG TGAGAGATTC 62325 .......... .......... .......... .......... .......... .......... 277 TGGGGTTGTA GCTGAAAAAG TGGTGAATTG AAATTCTTTT AGTACTAGTC TTGATTCCTA 62265 .......... .......... .......... .......... .......... .......... 277 GATATGGTGG AAAATATTAC AGCTGAGCTT TACCTTGTGT GATTGATTGT TGATTTAAGG 62205 .......... .......... .......... .......... .......... .......... 277 CCTAGATAGT TGGACATGCC GAATGTATCG AAAGCTATGG CCTTTTTGGT GTCTAATATA 62145 .......... .......... .......... .......... .......... .......... 277 TTTGGTTTTT CCATTTCAAT CAAACTTCAC TAGACATTAT TGCTGTAGTC TCATATTTGT 62085 .......... .......... .......... .......... .......... .......... 277 TGAAGGTATC CTATTAGGAT GGAGATTAGC CAAGGTTCCT ATATTGGTCG ACATCTCGCG 62025 .......... .......... .......... .......... .......... .......... 277 TTATAGTGTC TTTATATTGG TTTCGAGAAC TTTTTCCACT TGAACTAGTT TTTGGAGTTT 61965 .......... .......... .......... .......... .......... .......... 277 AGTTGGATTC AAGACCATTT TCATGACAAT TATGATGTTT GCTGGATGTT CCTTGTTATT 61905 .......... .......... .......... .......... .......... .......... 277 TCGTTATTTG ATCACTAGCA TACAGAGAAA CAAGTACATT TGAAACATGG GAGATTTTTG 61845 .......... .......... .......... .......... .......... .......... 277 CAGATGTGGA TGGTTAGTAC TTCTATTGAG ATTGATAATG TGAAAGCTTG ATTATATCTA 61785 .......... .......... .......... .......... .......... .......... 277 TTACCTTTTT TTTGCGTCTT TTAACTCATT CTTGCAATGC TTTGCCCGTC TCATGTGTTT 61725 .......... .......... .......... .......... .......... .......... 277 TTTTAGCAAT TAACTATTAC AGTTTACCTA TGTTGTATGC CCTGAAAAAT GTCTGTATGC 61665 .......... .......... .......... .......... .......... .......... 277 ATAATTCTTA GGCTTATCGA ATAGTCGAGG TCTAGTTGAT GAGCTTTATC TTCCTCTTTG 61605 .......... .......... .......... .......... .......... .......... 277 TACCAATTTT TTTGTTTTGT GTTTTTTTTC TGTCCTTTGT GTTATAGCAT GGGAGGAAAC 61545 .......... .......... .......... .......... .......... .......... 277 CTTGTTTATA TATCTACTCT GGATTTTACC TCTTTGTGTA AGACTCTGCC TTCTCTATAA 61485 .......... .......... .......... .......... .......... .......... 277 ATATGCATTT CTTATATCAA TAATTTCCAC TGGAAGAAGG GAACACAATT GTACATACTC 61425 .......... .......... .......... .......... .......... .......... 277 CAAATTTTAG GTGTCTTTAC AAACGCCTTC GTATTGTCAT TTATCTTCAG GTCACATATC 61365 |||||||||| .......... .......... .......... .......... .......... GTCACATATC 287 AATGTTTTCA CTGGAAGAAG GGAACACCAT TTGCTGATGA TCAAGGTATC TACAATAGGT 61305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTTTCA CTGGAAGAAG GGAACACCAT TTGCTGATGA TCAAGGTATC TACAATAGGT 347 TGACTTGGTG GGAGCAGATA GATAGTGGGA AGCAGCTTAC AC 61263 |||||||||| |||||||||| |||||||||| |||||||||| || TGACTTGGTG GGAGCAGATA GATAGTGGGA AGCAGCTTAC AC 389 hqPGS_C08SLm0006K11.1-_SGN-E392233+ (62924 62649,61374 61263) ******************************************************************************** EST sequence 12 -strand 751 n (File: SGN-E373415-) 1 CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG GCGGTTCCGC 61 CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG ACGACCTACA 121 TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC TCTCCTGGCA 181 TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTCAC ATATCAATGT TTTCACTGGA 241 AGAAGGGAAC ACCATTTGCT GATGATCAAG GTATCTACAA TAGGTTGACT TGGTGGGAGC 301 AGATAGATAG TGGGAAGCAG CTTACACGCA ATAGGAAGTT TCTAACAGTT GTCCCTGTGG 361 TGCTCTACTT GATAGCCTCC CATACAACTG ATTATCAACA CCCCATGCTA TTCTTCAACA 421 CTATCGCAGT TTTTGTACTG GTCGTTGCCA AATTTCCCAA TATGCACAAG GTTCGTATTT 481 TCGGGATAAA TGCAGATCAA TGAACTTTGG TTCAACTGAA GTCATACCAC AGAAAGAAGG 541 AAAAAGAAAA GTAGTCATTG ATTTGCTTTT AAGCATCATG AGTAAAACTG GGATGCCCCT 601 GTACAGATGC AAGAACTGGA AAGGGTTTAT CATTATTTTG TAAAAGAAAT CTCTTTGTGG 661 ATAATCTTTT CTTGTAAAAA CTGTTTGTAT GAGAATGCTG GAATATCGAT TGAGTTATGA 721 TATTTTTCAC GTTACAACTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 63473 to 56468): Exon 1 62863 62649 ( 215 n); cDNA 1 215 ( 215 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 216 327 ( 112 n); score: 1.000 PPA cDNA 741 751 MATCH C08SLm0006K11.1- SGN-E373415- 1.000 327 0.435 C PGS_C08SLm0006K11.1-_SGN-E373415- (62863 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG GCGGTTCCGC 62804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCATTGA ATTTTCAAGA ATTTATTGTA TGGCAAATTA TTATGTAACG GCGGTTCCGC 60 CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG ACGACCTACA 62744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGGATCT GAATCGGAAT ACCGAGTGGT TCACGTATCC CGGTGTATGG ACGACCTACA 120 TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC TCTCCTGGCA 62684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTAATTCT ATTCTTCTCA TGGCTCGTTG TTCTCTCTGT ATTTGGTTGC TCTCCTGGCA 180 TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTCGTATG ATTCTAATTT CCTTTAATTC 62624 |||||||||| |||||||||| |||||||||| ||||| TGGCTTGGAC CATCGTCCAT CTTTCTCATT TTCTC..... .......... .......... 215 GGTTGGAATT GAGTAGTTCT TTGCAGTTAA ATAATGATGG GTTGCTTTAA ACTCGTCAAA 62564 .......... .......... .......... .......... .......... .......... 215 TTTTGATAAA ATTATAATCA AGTTCAGTTT TTTTTTGGTT TAAATGGGTC TGATTAGAGG 62504 .......... .......... .......... .......... .......... .......... 215 AATAGCAGTT TAAATGTTTG GTTGATTGAT ATTCTTATGA TTACATGCCT AGTTCGTTTA 62444 .......... .......... .......... .......... .......... .......... 215 GTGTTTCCTG TGTTTTTGGT ACTATGGAAT TTGGAGACTC AATTTGGAAT TGATTTGAGC 62384 .......... .......... .......... .......... .......... .......... 215 TAGGTTCAGC TTTGGGTCAT TGATCATTTC CTTATGTTCA ATTTGGAAGT GAGAGATTCT 62324 .......... .......... .......... .......... .......... .......... 215 GGGGTTGTAG CTGAAAAAGT GGTGAATTGA AATTCTTTTA GTACTAGTCT TGATTCCTAG 62264 .......... .......... .......... .......... .......... .......... 215 ATATGGTGGA AAATATTACA GCTGAGCTTT ACCTTGTGTG ATTGATTGTT GATTTAAGGC 62204 .......... .......... .......... .......... .......... .......... 215 CTAGATAGTT GGACATGCCG AATGTATCGA AAGCTATGGC CTTTTTGGTG TCTAATATAT 62144 .......... .......... .......... .......... .......... .......... 215 TTGGTTTTTC CATTTCAATC AAACTTCACT AGACATTATT GCTGTAGTCT CATATTTGTT 62084 .......... .......... .......... .......... .......... .......... 215 GAAGGTATCC TATTAGGATG GAGATTAGCC AAGGTTCCTA TATTGGTCGA CATCTCGCGT 62024 .......... .......... .......... .......... .......... .......... 215 TATAGTGTCT TTATATTGGT TTCGAGAACT TTTTCCACTT GAACTAGTTT TTGGAGTTTA 61964 .......... .......... .......... .......... .......... .......... 215 GTTGGATTCA AGACCATTTT CATGACAATT ATGATGTTTG CTGGATGTTC CTTGTTATTT 61904 .......... .......... .......... .......... .......... .......... 215 CGTTATTTGA TCACTAGCAT ACAGAGAAAC AAGTACATTT GAAACATGGG AGATTTTTGC 61844 .......... .......... .......... .......... .......... .......... 215 AGATGTGGAT GGTTAGTACT TCTATTGAGA TTGATAATGT GAAAGCTTGA TTATATCTAT 61784 .......... .......... .......... .......... .......... .......... 215 TACCTTTTTT TTGCGTCTTT TAACTCATTC TTGCAATGCT TTGCCCGTCT CATGTGTTTT 61724 .......... .......... .......... .......... .......... .......... 215 TTTAGCAATT AACTATTACA GTTTACCTAT GTTGTATGCC CTGAAAAATG TCTGTATGCA 61664 .......... .......... .......... .......... .......... .......... 215 TAATTCTTAG GCTTATCGAA TAGTCGAGGT CTAGTTGATG AGCTTTATCT TCCTCTTTGT 61604 .......... .......... .......... .......... .......... .......... 215 ACCAATTTTT TTGTTTTGTG TTTTTTTTCT GTCCTTTGTG TTATAGCATG GGAGGAAACC 61544 .......... .......... .......... .......... .......... .......... 215 TTGTTTATAT ATCTACTCTG GATTTTACCT CTTTGTGTAA GACTCTGCCT TCTCTATAAA 61484 .......... .......... .......... .......... .......... .......... 215 TATGCATTTC TTATATCAAT AATTTCCACT GGAAGAAGGG AACACAATTG TACATACTCC 61424 .......... .......... .......... .......... .......... .......... 215 AAATTTTAGG TGTCTTTACA AACGCCTTCG TATTGTCATT TATCTTCAGG TCACATATCA 61364 | |||||||||| .......... .......... .......... .......... .........G TCACATATCA 226 ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT ACAATAGGTT 61304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTTCAC TGGAAGAAGG GAACACCATT TGCTGATGAT CAAGGTATCT ACAATAGGTT 286 GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 61263 |||||||||| |||||||||| |||||||||| |||||||||| | GACTTGGTGG GAGCAGATAG ATAGTGGGAA GCAGCTTACA C 327 hqPGS_C08SLm0006K11.1-_SGN-E373415- (62863 62649,61374 61263) ******************************************************************************** EST sequence 42 -strand 626 n (File: SGN-E235581-) 1 TTCTTCTCAT GGCTCGTTGT TCTCTCTGTA TTTGGTTGCT CTCCTGGCAT GGCTTGGACC 61 ATCGTCCATC TTTCTCATTT TCTCGTCACA TATCAATGTT TTCACTGGAA GAAGGGAACA 121 CCATTTGCTG ATGATCAAGG TATCTACAAT AGGTTGACTT GGTGGGAGCA GATAGATAGT 181 GGGAAGCAGC TTACACGCAA TAGGAAGTTT CTAACAGTTG TCCCTGTGGT GCTCTACTTG 241 ATAGCCTCCC ATACAACTGA TTATCAACAC CCCATGCTAT TCTTCAACAC TATCGCAGTT 301 TTTGTACTGG TCGTTGCCAA ATTTCCCAAT ATGCACAAGG TTCGTATTTT CGGGATAAAT 361 GCAGATCAAT GAACTTTGGT TCAACTGAAG TCATACCACA GAAAGAAGGA AAAAGAAAAG 421 TAGTCATTGA TTTGCTTTTA AGCATCATGA GTAAAACTGG GATGCCCCTG TACAGATGCA 481 AGAACTGGAA AGGGTTTATC ATTATTTTGT AAAAGAAATC TCTTTGTGGA TAATCTTTTC 541 TTGTAAAAAC TGTTTGTATG AGAATGCTGG AATATCGATT GAGTTATGAT ATTTTTCACG 601 TTACAACTCA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 63342 to 56408): Exon 1 62732 62649 ( 84 n); cDNA 1 84 ( 84 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 85 196 ( 112 n); score: 1.000 PPA cDNA 610 626 MATCH C08SLm0006K11.1- SGN-E235581- 1.000 196 0.313 C PGS_C08SLm0006K11.1-_SGN-E235581- (62732 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): TTCTTCTCAT GGCTCGTTGT TCTCTCTGTA TTTGGTTGCT CTCCTGGCAT GGCTTGGACC 62673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTCAT GGCTCGTTGT TCTCTCTGTA TTTGGTTGCT CTCCTGGCAT GGCTTGGACC 60 ATCGTCCATC TTTCTCATTT TCTCGTATGA TTCTAATTTC CTTTAATTCG GTTGGAATTG 62613 |||||||||| |||||||||| |||| ATCGTCCATC TTTCTCATTT TCTC...... .......... .......... .......... 84 AGTAGTTCTT TGCAGTTAAA TAATGATGGG TTGCTTTAAA CTCGTCAAAT TTTGATAAAA 62553 .......... .......... .......... .......... .......... .......... 84 TTATAATCAA GTTCAGTTTT TTTTTGGTTT AAATGGGTCT GATTAGAGGA ATAGCAGTTT 62493 .......... .......... .......... .......... .......... .......... 84 AAATGTTTGG TTGATTGATA TTCTTATGAT TACATGCCTA GTTCGTTTAG TGTTTCCTGT 62433 .......... .......... .......... .......... .......... .......... 84 GTTTTTGGTA CTATGGAATT TGGAGACTCA ATTTGGAATT GATTTGAGCT AGGTTCAGCT 62373 .......... .......... .......... .......... .......... .......... 84 TTGGGTCATT GATCATTTCC TTATGTTCAA TTTGGAAGTG AGAGATTCTG GGGTTGTAGC 62313 .......... .......... .......... .......... .......... .......... 84 TGAAAAAGTG GTGAATTGAA ATTCTTTTAG TACTAGTCTT GATTCCTAGA TATGGTGGAA 62253 .......... .......... .......... .......... .......... .......... 84 AATATTACAG CTGAGCTTTA CCTTGTGTGA TTGATTGTTG ATTTAAGGCC TAGATAGTTG 62193 .......... .......... .......... .......... .......... .......... 84 GACATGCCGA ATGTATCGAA AGCTATGGCC TTTTTGGTGT CTAATATATT TGGTTTTTCC 62133 .......... .......... .......... .......... .......... .......... 84 ATTTCAATCA AACTTCACTA GACATTATTG CTGTAGTCTC ATATTTGTTG AAGGTATCCT 62073 .......... .......... .......... .......... .......... .......... 84 ATTAGGATGG AGATTAGCCA AGGTTCCTAT ATTGGTCGAC ATCTCGCGTT ATAGTGTCTT 62013 .......... .......... .......... .......... .......... .......... 84 TATATTGGTT TCGAGAACTT TTTCCACTTG AACTAGTTTT TGGAGTTTAG TTGGATTCAA 61953 .......... .......... .......... .......... .......... .......... 84 GACCATTTTC ATGACAATTA TGATGTTTGC TGGATGTTCC TTGTTATTTC GTTATTTGAT 61893 .......... .......... .......... .......... .......... .......... 84 CACTAGCATA CAGAGAAACA AGTACATTTG AAACATGGGA GATTTTTGCA GATGTGGATG 61833 .......... .......... .......... .......... .......... .......... 84 GTTAGTACTT CTATTGAGAT TGATAATGTG AAAGCTTGAT TATATCTATT ACCTTTTTTT 61773 .......... .......... .......... .......... .......... .......... 84 TGCGTCTTTT AACTCATTCT TGCAATGCTT TGCCCGTCTC ATGTGTTTTT TTAGCAATTA 61713 .......... .......... .......... .......... .......... .......... 84 ACTATTACAG TTTACCTATG TTGTATGCCC TGAAAAATGT CTGTATGCAT AATTCTTAGG 61653 .......... .......... .......... .......... .......... .......... 84 CTTATCGAAT AGTCGAGGTC TAGTTGATGA GCTTTATCTT CCTCTTTGTA CCAATTTTTT 61593 .......... .......... .......... .......... .......... .......... 84 TGTTTTGTGT TTTTTTTCTG TCCTTTGTGT TATAGCATGG GAGGAAACCT TGTTTATATA 61533 .......... .......... .......... .......... .......... .......... 84 TCTACTCTGG ATTTTACCTC TTTGTGTAAG ACTCTGCCTT CTCTATAAAT ATGCATTTCT 61473 .......... .......... .......... .......... .......... .......... 84 TATATCAATA ATTTCCACTG GAAGAAGGGA ACACAATTGT ACATACTCCA AATTTTAGGT 61413 .......... .......... .......... .......... .......... .......... 84 GTCTTTACAA ACGCCTTCGT ATTGTCATTT ATCTTCAGGT CACATATCAA TGTTTTCACT 61353 || |||||||||| |||||||||| .......... .......... .......... ........GT CACATATCAA TGTTTTCACT 106 GGAAGAAGGG AACACCATTT GCTGATGATC AAGGTATCTA CAATAGGTTG ACTTGGTGGG 61293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGAAGGG AACACCATTT GCTGATGATC AAGGTATCTA CAATAGGTTG ACTTGGTGGG 166 AGCAGATAGA TAGTGGGAAG CAGCTTACAC 61263 |||||||||| |||||||||| |||||||||| AGCAGATAGA TAGTGGGAAG CAGCTTACAC 196 hqPGS_C08SLm0006K11.1-_SGN-E235581- (62732 62649,61374 61263) ******************************************************************************** EST sequence 37 -strand 596 n (File: SGN-E397854-) 1 TGGGTTGCTC TCCTGGCATG GCTTGGACCA TCGTCCATCT TTCTCATTTT CTCGTCACAT 61 ATCAATGTTT TCACTGGAAG AAGGGAACAC CATTTGCTGA TGATCAAGGT ATCTACAATA 121 GGTTGACTTG GTGGGAGCAG ATAGATAGTG GGAAGCAGCT TACACGCAAT AGGAAGTTTC 181 TAACAGTTGT CCCTGTGGTG CTCTACTTGA TAGCCTCCCA TACAACTGAT TATCAACACC 241 CCATGCTATT CTTCAACACT ATCGCAGTTT TTGTACTGGT CGTTGCCAAA TTTCCCAATA 301 TGCACAAGGT TCGTATTTTC GGGATAAATG CAGATCAATG AACTTTGGTT CAACTGAAGT 361 CATACCACAG AAAGAAGGAA AAAGAAAAGT AGTCATTGAT TTGCTTTTAA GCATCATGAG 421 TAAAACTGGG ATGCCCCTGT ACAGATGCAA GAACTGGAAA GGGTTTATCA TTATTTTGTA 481 AAAGAAATCT CTTTGTGGAT AATCTTTTCT TGTAAAAACT GTTTGTATGA GAATGCTGGA 541 ATATCGATTG AGTTATGATA TTTTTCACGT TACAACTCAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 63329 to 56398): Exon 1 62699 62649 ( 51 n); cDNA 3 53 ( 51 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 54 165 ( 112 n); score: 1.000 PPA cDNA 579 596 MATCH C08SLm0006K11.1- SGN-E397854- 1.000 163 0.273 C PGS_C08SLm0006K11.1-_SGN-E397854- (62699 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): GGTTGCTCTC CTGGCATGGC TTGGACCATC GTCCATCTTT CTCATTTTCT CGTATGATTC 62640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GGTTGCTCTC CTGGCATGGC TTGGACCATC GTCCATCTTT CTCATTTTCT C......... 53 TAATTTCCTT TAATTCGGTT GGAATTGAGT AGTTCTTTGC AGTTAAATAA TGATGGGTTG 62580 .......... .......... .......... .......... .......... .......... 53 CTTTAAACTC GTCAAATTTT GATAAAATTA TAATCAAGTT CAGTTTTTTT TTGGTTTAAA 62520 .......... .......... .......... .......... .......... .......... 53 TGGGTCTGAT TAGAGGAATA GCAGTTTAAA TGTTTGGTTG ATTGATATTC TTATGATTAC 62460 .......... .......... .......... .......... .......... .......... 53 ATGCCTAGTT CGTTTAGTGT TTCCTGTGTT TTTGGTACTA TGGAATTTGG AGACTCAATT 62400 .......... .......... .......... .......... .......... .......... 53 TGGAATTGAT TTGAGCTAGG TTCAGCTTTG GGTCATTGAT CATTTCCTTA TGTTCAATTT 62340 .......... .......... .......... .......... .......... .......... 53 GGAAGTGAGA GATTCTGGGG TTGTAGCTGA AAAAGTGGTG AATTGAAATT CTTTTAGTAC 62280 .......... .......... .......... .......... .......... .......... 53 TAGTCTTGAT TCCTAGATAT GGTGGAAAAT ATTACAGCTG AGCTTTACCT TGTGTGATTG 62220 .......... .......... .......... .......... .......... .......... 53 ATTGTTGATT TAAGGCCTAG ATAGTTGGAC ATGCCGAATG TATCGAAAGC TATGGCCTTT 62160 .......... .......... .......... .......... .......... .......... 53 TTGGTGTCTA ATATATTTGG TTTTTCCATT TCAATCAAAC TTCACTAGAC ATTATTGCTG 62100 .......... .......... .......... .......... .......... .......... 53 TAGTCTCATA TTTGTTGAAG GTATCCTATT AGGATGGAGA TTAGCCAAGG TTCCTATATT 62040 .......... .......... .......... .......... .......... .......... 53 GGTCGACATC TCGCGTTATA GTGTCTTTAT ATTGGTTTCG AGAACTTTTT CCACTTGAAC 61980 .......... .......... .......... .......... .......... .......... 53 TAGTTTTTGG AGTTTAGTTG GATTCAAGAC CATTTTCATG ACAATTATGA TGTTTGCTGG 61920 .......... .......... .......... .......... .......... .......... 53 ATGTTCCTTG TTATTTCGTT ATTTGATCAC TAGCATACAG AGAAACAAGT ACATTTGAAA 61860 .......... .......... .......... .......... .......... .......... 53 CATGGGAGAT TTTTGCAGAT GTGGATGGTT AGTACTTCTA TTGAGATTGA TAATGTGAAA 61800 .......... .......... .......... .......... .......... .......... 53 GCTTGATTAT ATCTATTACC TTTTTTTTGC GTCTTTTAAC TCATTCTTGC AATGCTTTGC 61740 .......... .......... .......... .......... .......... .......... 53 CCGTCTCATG TGTTTTTTTA GCAATTAACT ATTACAGTTT ACCTATGTTG TATGCCCTGA 61680 .......... .......... .......... .......... .......... .......... 53 AAAATGTCTG TATGCATAAT TCTTAGGCTT ATCGAATAGT CGAGGTCTAG TTGATGAGCT 61620 .......... .......... .......... .......... .......... .......... 53 TTATCTTCCT CTTTGTACCA ATTTTTTTGT TTTGTGTTTT TTTTCTGTCC TTTGTGTTAT 61560 .......... .......... .......... .......... .......... .......... 53 AGCATGGGAG GAAACCTTGT TTATATATCT ACTCTGGATT TTACCTCTTT GTGTAAGACT 61500 .......... .......... .......... .......... .......... .......... 53 CTGCCTTCTC TATAAATATG CATTTCTTAT ATCAATAATT TCCACTGGAA GAAGGGAACA 61440 .......... .......... .......... .......... .......... .......... 53 CAATTGTACA TACTCCAAAT TTTAGGTGTC TTTACAAACG CCTTCGTATT GTCATTTATC 61380 .......... .......... .......... .......... .......... .......... 53 TTCAGGTCAC ATATCAATGT TTTCACTGGA AGAAGGGAAC ACCATTTGCT GATGATCAAG 61320 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTCAC ATATCAATGT TTTCACTGGA AGAAGGGAAC ACCATTTGCT GATGATCAAG 108 GTATCTACAA TAGGTTGACT TGGTGGGAGC AGATAGATAG TGGGAAGCAG CTTACAC 61263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTATCTACAA TAGGTTGACT TGGTGGGAGC AGATAGATAG TGGGAAGCAG CTTACAC 165 hqPGS_C08SLm0006K11.1-_SGN-E397854- (62699 62649,61374 61263) ******************************************************************************** EST sequence 124 +strand 429 n (File: SGN-E290294+) 1 GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 61 GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 121 ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 181 AATTATTATG TAACGGCGGG TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 241 TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 301 TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG GCCATCTTTC TCATTTTCTC 361 GTCACATATC AATGTTTTCA CTGGAAGAAG GGAACACCAT TTGCTGATGA TCAAGGTATC 421 TACAATAGG Predicted gene structure (within gDNA segment 63608 to 60696): Exon 1 63008 62649 ( 360 n); cDNA 1 360 ( 360 n); score: 0.994 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 0.98), Pa: 0.978 (s: 1.00) Exon 2 61374 61306 ( 69 n); cDNA 361 429 ( 69 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E290294+ 0.995 429 1.000 C PGS_C08SLm0006K11.1-_SGN-E290294+ (63008 62649,61374 61306) Alignment (genomic DNA sequence = upper lines): GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 62949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 60 GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 62889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 120 ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 62829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 180 AATTATTATG TAACGGCGGT TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 62769 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATTATG TAACGGCGGG TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 240 TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 62709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 300 TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG TCCATCTTTC TCATTTTCTC 62649 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG GCCATCTTTC TCATTTTCTC 360 GTATGATTCT AATTTCCTTT AATTCGGTTG GAATTGAGTA GTTCTTTGCA GTTAAATAAT 62589 .......... .......... .......... .......... .......... .......... 360 GATGGGTTGC TTTAAACTCG TCAAATTTTG ATAAAATTAT AATCAAGTTC AGTTTTTTTT 62529 .......... .......... .......... .......... .......... .......... 360 TGGTTTAAAT GGGTCTGATT AGAGGAATAG CAGTTTAAAT GTTTGGTTGA TTGATATTCT 62469 .......... .......... .......... .......... .......... .......... 360 TATGATTACA TGCCTAGTTC GTTTAGTGTT TCCTGTGTTT TTGGTACTAT GGAATTTGGA 62409 .......... .......... .......... .......... .......... .......... 360 GACTCAATTT GGAATTGATT TGAGCTAGGT TCAGCTTTGG GTCATTGATC ATTTCCTTAT 62349 .......... .......... .......... .......... .......... .......... 360 GTTCAATTTG GAAGTGAGAG ATTCTGGGGT TGTAGCTGAA AAAGTGGTGA ATTGAAATTC 62289 .......... .......... .......... .......... .......... .......... 360 TTTTAGTACT AGTCTTGATT CCTAGATATG GTGGAAAATA TTACAGCTGA GCTTTACCTT 62229 .......... .......... .......... .......... .......... .......... 360 GTGTGATTGA TTGTTGATTT AAGGCCTAGA TAGTTGGACA TGCCGAATGT ATCGAAAGCT 62169 .......... .......... .......... .......... .......... .......... 360 ATGGCCTTTT TGGTGTCTAA TATATTTGGT TTTTCCATTT CAATCAAACT TCACTAGACA 62109 .......... .......... .......... .......... .......... .......... 360 TTATTGCTGT AGTCTCATAT TTGTTGAAGG TATCCTATTA GGATGGAGAT TAGCCAAGGT 62049 .......... .......... .......... .......... .......... .......... 360 TCCTATATTG GTCGACATCT CGCGTTATAG TGTCTTTATA TTGGTTTCGA GAACTTTTTC 61989 .......... .......... .......... .......... .......... .......... 360 CACTTGAACT AGTTTTTGGA GTTTAGTTGG ATTCAAGACC ATTTTCATGA CAATTATGAT 61929 .......... .......... .......... .......... .......... .......... 360 GTTTGCTGGA TGTTCCTTGT TATTTCGTTA TTTGATCACT AGCATACAGA GAAACAAGTA 61869 .......... .......... .......... .......... .......... .......... 360 CATTTGAAAC ATGGGAGATT TTTGCAGATG TGGATGGTTA GTACTTCTAT TGAGATTGAT 61809 .......... .......... .......... .......... .......... .......... 360 AATGTGAAAG CTTGATTATA TCTATTACCT TTTTTTTGCG TCTTTTAACT CATTCTTGCA 61749 .......... .......... .......... .......... .......... .......... 360 ATGCTTTGCC CGTCTCATGT GTTTTTTTAG CAATTAACTA TTACAGTTTA CCTATGTTGT 61689 .......... .......... .......... .......... .......... .......... 360 ATGCCCTGAA AAATGTCTGT ATGCATAATT CTTAGGCTTA TCGAATAGTC GAGGTCTAGT 61629 .......... .......... .......... .......... .......... .......... 360 TGATGAGCTT TATCTTCCTC TTTGTACCAA TTTTTTTGTT TTGTGTTTTT TTTCTGTCCT 61569 .......... .......... .......... .......... .......... .......... 360 TTGTGTTATA GCATGGGAGG AAACCTTGTT TATATATCTA CTCTGGATTT TACCTCTTTG 61509 .......... .......... .......... .......... .......... .......... 360 TGTAAGACTC TGCCTTCTCT ATAAATATGC ATTTCTTATA TCAATAATTT CCACTGGAAG 61449 .......... .......... .......... .......... .......... .......... 360 AAGGGAACAC AATTGTACAT ACTCCAAATT TTAGGTGTCT TTACAAACGC CTTCGTATTG 61389 .......... .......... .......... .......... .......... .......... 360 TCATTTATCT TCAGGTCACA TATCAATGTT TTCACTGGAA GAAGGGAACA CCATTTGCTG 61329 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTCACA TATCAATGTT TTCACTGGAA GAAGGGAACA CCATTTGCTG 406 ATGATCAAGG TATCTACAAT AGG 61306 |||||||||| |||||||||| ||| ATGATCAAGG TATCTACAAT AGG 429 hqPGS_C08SLm0006K11.1-_SGN-E290294+ (63008 62649,61374 61306) ******************************************************************************** EST sequence 56 -strand 702 n (File: SGN-E544787-) 1 AGGTCACATA TCAATGTTTT CACTGGAAGA AGGGAACACC ATTTGCTGAT GATCAAGGTA 61 TCTACAATAG GTTGACTTGG TGGGAGCAGA TAGATAGTGG GAAGCAGCTT ACACGCAATA 121 GGAAGTTTCT AACAGTTGTC CCTGTGGTGC TGTAAGTAGT CAATTTCAGC AAGTTGATTG 181 CTATTTACAA TATTAATGCT ATGAACAAAT TTCCTGCTTT CAAGTGTAGT CGATGTGCAT 241 ATGATCTCAC CAACTGGCTT GAAAAAGCTT CTAAATTTCA CCATGATGCA CTTTACAACA 301 CAGGTTCTGA TTATGGTAGA GTATATATAT TAGAGGGCAT AATGCTCTTA AGCCATGATT 361 TTGTAGGTTT GATTACTGAA CTTTTCCAAT CGTTCATTTT ATACGACACT ATTCTCATTT 421 GGGAAGTTAA CAATTACCGG TCCAAGAAGT CAGAAAATAG ATGTAGTAGC TAGCTAGACA 481 AAAATTATCA TGGATCACTC ACAAATCAAT GTTATTAGCA TTCCATTTAT GCATAACTTC 541 CATGGTTAAT GATATTAGTC CAAGTGTTAA TTGCACAAGC TTGCTTTCTG TATCTTCTTG 601 ATGTCATTTA GTGGAACTCC CTTACTAAAT CAAAAAAATA AGAAGCTAGT TTGTGTTTAA 661 TTCTTTATCA AAAAAAAAAA AAAAAAAACT CGAGGGGGGC CC Predicted gene structure (within gDNA segment 61986 to 54228): Exon 1 61376 61263 ( 114 n); cDNA 1 114 ( 114 n); score: 1.000 Intron 1 61262 55190 (6073 n); Pd: 0.677 (s: 1.00), Pa: 0.904 (s: 0) Exon 2 55189 55185 ( 5 n); cDNA 115 119 ( 5 n); score: 0.600 PPA cDNA 670 689 MATCH C08SLm0006K11.1- SGN-E544787- 1.000 119 0.170 C PGS_C08SLm0006K11.1-_SGN-E544787- (61376 61263,55189 55185) Alignment (genomic DNA sequence = upper lines): AGGTCACATA TCAATGTTTT CACTGGAAGA AGGGAACACC ATTTGCTGAT GATCAAGGTA 61317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCACATA TCAATGTTTT CACTGGAAGA AGGGAACACC ATTTGCTGAT GATCAAGGTA 60 TCTACAATAG GTTGACTTGG TGGGAGCAGA TAGATAGTGG GAAGCAGCTT ACACGCAATT 61257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TCTACAATAG GTTGACTTGG TGGGAGCAGA TAGATAGTGG GAAGCAGCTT ACAC...... 114 CCCTCTCTCC GAAATTATGT TTCGCTTCTC AAAAAGTCTA GTGTTTAATC CTGTTAAATT 61197 .......... .......... .......... .......... .......... .......... 114 AAGTTATATA TTAATTAAAA TTCACATAAA ATTTGACAAA TAATTTGAAA TAATAAACTG 61137 .......... .......... .......... .......... .......... .......... 114 TTCAGTTTGA TTCAAATTTA GATCCACGAC AAAATTATTG TAAGTGAGAA GATTTTGTGG 61077 .......... .......... .......... .......... .......... .......... 114 CTATGTCATA TCAAAAGAGT CCAAAAATTC TTCTTAGATA ATTTTCACTA ATGTCCATAA 61017 .......... .......... .......... .......... .......... .......... 114 TTTATGTTGT CCTCACTTAA ATCAAATCAT TGCCTGAATC ATCGTATGTG TTAGGCTTGT 60957 .......... .......... .......... .......... .......... .......... 114 CTACATGTTT TAATTTGGTT TATTAATATA TAATACCTGT TTAAGCCTAT TACTCCTAAG 60897 .......... .......... .......... .......... .......... .......... 114 TCCTAATAAA GTGATCTAAT AGACATCATT TCAAGTTCCC AATTTTTTTT TTACCCATAT 60837 .......... .......... .......... .......... .......... .......... 114 TACATAATTA AGTTAACTAT ATCAAATATG ACATGGCACA TATAATTATA TCAACCTACG 60777 .......... .......... .......... .......... .......... .......... 114 TAGAAAACAC CTTAGAGGTT TAAGTGAATG CAAATAATTA ATTAAAAAAA CGGATTCAAG 60717 .......... .......... .......... .......... .......... .......... 114 TAATTATTGA TGATATATGG TGTTAGCAAT TCAAGTTGGG TTTGGTACAA AAAGAAAATA 60657 .......... .......... .......... .......... .......... .......... 114 TTTTGCACTA AAGATATTCT TTCTTTTTAT TCATTTTAAC AATTCTAAAA GTATTTATAT 60597 .......... .......... .......... .......... .......... .......... 114 ATAATATAGA TAGATATTAT CATAGGTTTA CTGGAGGTTA CAAGTATTAG GGTGAATCTC 60537 .......... .......... .......... .......... .......... .......... 114 ACTGGTAAAA TCTATTTTGC TTACTTTTAT TAGAAAAATC ATTTTTTAAA AACTTTATTT 60477 .......... .......... .......... .......... .......... .......... 114 TTTTAAAAAA AAATTTATCA AACAAATAAT AAAAATTCAC CTTTCGAACA CACGGCGGCT 60417 .......... .......... .......... .......... .......... .......... 114 AAGAGGGGAA TAAGCTCTAG AAAAAATCAA ATACTAAGAA CAACAAAATC CAAAAAATAA 60357 .......... .......... .......... .......... .......... .......... 114 AACAAAGGAA ATATATTATT GTTTTTTAAA ATAAGGTCAC ATGATTTACT ACTAATCATT 60297 .......... .......... .......... .......... .......... .......... 114 ATGATTCTGA ATATAGTTGG TATATATAAA GTTATAGTAA TATATATATA TATATATATT 60237 .......... .......... .......... .......... .......... .......... 114 CATAGACTGG ATCTAGTCAT CCTACAGATT CAAAAAGTTA CTATAAAAAT AATATTTCCC 60177 .......... .......... .......... .......... .......... .......... 114 TGACCTACCA ATAGGATACA TTTTTGTTAG TCCACAACGT CTAATCATGG TTTCATTTGA 60117 .......... .......... .......... .......... .......... .......... 114 TCTGAATAAA CCAATGAAAA AAATTTGGAA TAAGAAATTA TCGTTAACGG TAATTCCAGT 60057 .......... .......... .......... .......... .......... .......... 114 CGGTGATACG TATCGTTTGT TGTTCTTTGA GCTCGCTAAT ATCAAGCTCA AAAATACGTA 59997 .......... .......... .......... .......... .......... .......... 114 TATTACGTGA AATTATATTT TTTTTCTAAA ATATTATTGG TGTAAAAATT TATTAGTTTA 59937 .......... .......... .......... .......... .......... .......... 114 GCGATTCTAA TCATTGACCA ACCCTGTTAA ACCCTAGCAT TCTACTGCTG GAGTCCAACT 59877 .......... .......... .......... .......... .......... .......... 114 TTGATTTGAT ATTTGTAGCA GTCCAAACTC GTATTATGTA ATTTTGGCTC AATAATTCTT 59817 .......... .......... .......... .......... .......... .......... 114 ATATATAATA GTTCTTAAAT TACGTGATAA TTTAATTCAA ATAAAAACAT ATGTGTTACT 59757 .......... .......... .......... .......... .......... .......... 114 GTCATTACTA GCTTACGATT TACCTTTTTA ACTTATCCTC ATCAATTCGC TCTCTATCAT 59697 .......... .......... .......... .......... .......... .......... 114 GTGATAAATT CTGATCCAAC GATTCTCCAA ATCTTTAAAT AATAACAATG CGATCCATGG 59637 .......... .......... .......... .......... .......... .......... 114 TACGTCGCAT TCTTTGTGTA CTAATTTTGT CTGTCCATTA CATTGAACTT ATAGGTTAAA 59577 .......... .......... .......... .......... .......... .......... 114 TTTTTCTTTT TTTTTACACT GGTTAAATTA ACATGTTTTT TTGTTTAATA ATAGCACATG 59517 .......... .......... .......... .......... .......... .......... 114 CATGCACGTG GATGAATTTG GGTCCAATTT GGTACCATAA ATTTGGATTT TGTAACTGTT 59457 .......... .......... .......... .......... .......... .......... 114 GGGTTTGTTG ACAAATAAAA AAGCCCAAGC CATTTCAAAA CACGTTTTAT TTTTTATTAT 59397 .......... .......... .......... .......... .......... .......... 114 AAAGATCCAA AATATAAAAT CCAAAAACTA CAAAAAATAA ATTAAAACAG CTATTTTCAC 59337 .......... .......... .......... .......... .......... .......... 114 TTCAAATTAC TCATAAAAAA TCAGTTTTAT TTATTTTACA GTTAAACACA ACATAAATAT 59277 .......... .......... .......... .......... .......... .......... 114 ATCACATACA GATCAAGTTG TCCATTTTAG ATTAATAAAA TAAATAAATA AAAACTGCCA 59217 .......... .......... .......... .......... .......... .......... 114 CAATTAAAAT ATTTTACTGA AGTTGACACA TGTTGGGTAT CAGAGGTGGA TCAGATTCTC 59157 .......... .......... .......... .......... .......... .......... 114 TGTTTATACA ACTACCTTCT TTACTACTTT TATATTGTTC AAAATTTTTT GAAAGTTAAA 59097 .......... .......... .......... .......... .......... .......... 114 AGTGATATTT TATAATATTA AATTTTTAAT TTTTTTAAAT TATTATGATT TATAATATTT 59037 .......... .......... .......... .......... .......... .......... 114 TTTTCATGGT AATATCATGT ATTCAATTTT GTTTCAATTT TTTTTAAAAA AATTATGTTC 58977 .......... .......... .......... .......... .......... .......... 114 GAATACACGA TAAGAATATG TTATCATATA AATTGAAAGA AAAAAATATT TTTTGTTAAT 58917 .......... .......... .......... .......... .......... .......... 114 CACAAAATAT GGTGAAATGA TTAAAATTTC TGCATCTTTA GTCGAGATTC AAAATTTCTC 58857 .......... .......... .......... .......... .......... .......... 114 CACCTTTAAT ATGACGTGAA CATGTCATCT CAATTTTTAA ATGGATTGAC TCAAAAGAGA 58797 .......... .......... .......... .......... .......... .......... 114 AAGACGATAA ATTCATTAAA TTTTGAAATA AAAAAGAATT AAGTGTGATT TCAAGCGTTT 58737 .......... .......... .......... .......... .......... .......... 114 ATTAGATATT AAACTTTCAC ATGTAAAAGA CAATAGATTT TTTTTAATGA TATACATCAA 58677 .......... .......... .......... .......... .......... .......... 114 TATTAATTAG AAAACATTTG AGTTTTAAAG TTTGTTAAGG TGAATGCCTA TGATTAAACG 58617 .......... .......... .......... .......... .......... .......... 114 AGATGATATA ATACTAAATA GTTAATTCAT CTGCACTTCT TTCCATGTTA TTTAATTCGA 58557 .......... .......... .......... .......... .......... .......... 114 CATATTCTTT AAAAAAAGAT TAAAAACATA ATGATAATTT TACCTTATCA CTCATTACTA 58497 .......... .......... .......... .......... .......... .......... 114 TATATGAGTC ATATAAATAT TAAAAATAAT TAATATTTAA TAATAAAAAT AAAATAATAA 58437 .......... .......... .......... .......... .......... .......... 114 ATTATATATA TTTTTTTAAC TAAACTAGTA AAAATGACCC TTTTTTTTAT ACGATAGACT 58377 .......... .......... .......... .......... .......... .......... 114 ATTTTTTGGC TAGCATGTGA TTGGCGCTCT ACAAAGAAAT GTATTTTTTG AAAAAGGTGT 58317 .......... .......... .......... .......... .......... .......... 114 ACGACATAAT AATTGAATGT AAGTTTTCAA TTAATAAGAA ACAACTTGAT CGCACTGTCC 58257 .......... .......... .......... .......... .......... .......... 114 TTTACTTTTC TATTAGTTTC TCCCTTGCTA TAAATAATAA ATATTGATAA GTGTTAGTTT 58197 .......... .......... .......... .......... .......... .......... 114 TTGGAAACGA GTACTTTCTT TCAATTGGAG CTTTACGTGG TGTAAAGTAA TATAAATAAA 58137 .......... .......... .......... .......... .......... .......... 114 TTTTAATATA AATTTCAGAC ACTAGATAAA AATAATTAAA AAGAATAAGT GTTAAAATTA 58077 .......... .......... .......... .......... .......... .......... 114 TATATATCGT TAGTATTAAA AAAGTTATGA TATCATCTAA GGTGTCTTTA AATGAGTTTG 58017 .......... .......... .......... .......... .......... .......... 114 TAGTCATGCA TATAGTTATT TAATAAGTAC GGCGAATAAA AATGATTTTG ATGATGTTAA 57957 .......... .......... .......... .......... .......... .......... 114 CAGCTATTTA TATTAATGAA ATAGTGTTTA CTATTTAAAT TCTATTCATA CTACAATAAT 57897 .......... .......... .......... .......... .......... .......... 114 TATAAGGATG TAAGTTATAT ATACATATTA TTATTCATTA TGAATCAATT AAAAATTTAT 57837 .......... .......... .......... .......... .......... .......... 114 ACTATAAAAT ATGATTTTTT TCACCTAACG AGCTCAGTGG AGAAACACAT GATCACTGAA 57777 .......... .......... .......... .......... .......... .......... 114 ATATTAAAAA AACTTGCTAA TGTTATTGTG TTAAAATACT ACTATTTTTT CTTTTCTTAC 57717 .......... .......... .......... .......... .......... .......... 114 CTATTAAATC AATTTATTTG AATGATTTTA ACTAATATTG TCAATAAACA TGAGTTTAGA 57657 .......... .......... .......... .......... .......... .......... 114 TTAATGAAAT ACTCTTTTGG TTATAATTTG TTTTTTTTCC AGTTAGTTGT CAATGAAATT 57597 .......... .......... .......... .......... .......... .......... 114 ATTTATAATC GCACAAATAC GTATATCTTA TTTTAAATCA TAAATTTCAA GATAAATAAA 57537 .......... .......... .......... .......... .......... .......... 114 TAAATAAAAT ATAAAATATC GAGTCAAACA GCATCAACGA TATTCTATAA TAATAATGCT 57477 .......... .......... .......... .......... .......... .......... 114 TTTGTACTTT CAACTTCACG GCTTCGAAAA GATCACTACC TTTCTCCTAA TTTTTGCATC 57417 .......... .......... .......... .......... .......... .......... 114 TTCTTAGTTC TCTCTGTTCT GAAAATTTTT CTTTAGAAAA AACACACACA AAAAAAAATA 57357 .......... .......... .......... .......... .......... .......... 114 AAAATGGGAA GAGCACCATG TTGTGCTAAA GAAGGATTGC GTAAAGGGCC ATGGTCTACT 57297 .......... .......... .......... .......... .......... .......... 114 AAAGAAGATT TATTACTTAC TAATTATATC AATCAATATG GTGAAGGCCA ATGGAGATCT 57237 .......... .......... .......... .......... .......... .......... 114 TTGCCTAAAA ATGCTGGTAA TTTTTCTTTT TTCTAATTCC TTTCTCGATG TTTGATACGA 57177 .......... .......... .......... .......... .......... .......... 114 TACAAGTTAT TTTTAATATA TATAGTAACA ATAAATTTTA ATTTTCTTCT TTAAAATTTG 57117 .......... .......... .......... .......... .......... .......... 114 TGTGTTTAAT ACATTATTGT TATGAAAATT CTGTTATAGT TCTTGCTCGT TACGGAATGA 57057 .......... .......... .......... .......... .......... .......... 114 AATGACTTTT GTTGTACCAT ATGTATTTAT ATATGAGTGT ATTTATTTTC TTGCTCGTTA 56997 .......... .......... .......... .......... .......... .......... 114 GCGTAATTCT ATGAAAAATA TTTCAGGATT GCTTAGGTGT GGGAAAAGTT GTAGATTAAG 56937 .......... .......... .......... .......... .......... .......... 114 ATGGGTGAAT TATTTAAAGC CAGGGATTAA AAGAGGAAAT TTTAGTGAAG ATGAAGAAGA 56877 .......... .......... .......... .......... .......... .......... 114 TCTTATAGTG AGATTACATT CACTTCTGGG TAATCGTTGG TCATTAATTG CCGGACGATT 56817 .......... .......... .......... .......... .......... .......... 114 ACCTGGTCGA ACAGATAATG AAATCAAGAA TTATTGGAAT ACGCATTTGA CCAAGAAGCT 56757 .......... .......... .......... .......... .......... .......... 114 CAGAAGCACA GGAATTGAAC CAAAACCCCA CAAGAATTTG ACCAAATTAA AGGAGAAATC 56697 .......... .......... .......... .......... .......... .......... 114 AAGAAAACAA ACCAAAAAGG AGAAATCAAG AAAAGAAGTG GGGAAGAAAA GCAATGATGA 56637 .......... .......... .......... .......... .......... .......... 114 GAAGTTGAAG GGTCAAATTG CACAAGTTGA GAAGATAAAA GTATTTGCAC CAAAGCCCAT 56577 .......... .......... .......... .......... .......... .......... 114 AAGGATTTCT TGTGGGATTT CAAGGAACAA TAGTTTTGAA AATGATACAT TGAGTACTAC 56517 .......... .......... .......... .......... .......... .......... 114 TACTTGTTCC TCAAATAGTA ATTTTGAAAA AGTTGATGAT GGAAAAGACA GGGAAAAAGA 56457 .......... .......... .......... .......... .......... .......... 114 GGTGAAGTTA TTTCCAAGGG AATTAGATTT TGATGAATTA CTTGAAGGGG GTGGATTTTA 56397 .......... .......... .......... .......... .......... .......... 114 TGATGAATTT CTTATGGGAG AAAGCTGCAA TTTTTCAAAC AAAGTGGAAA TGAATGATAA 56337 .......... .......... .......... .......... .......... .......... 114 TATGGTGGAA AAAGTATATG AAGAATATCT TCTACTTCTT TCTGAAATTC AAGAAGATCA 56277 .......... .......... .......... .......... .......... .......... 114 AACGGAGCAA AAATTCTCAA TGTAAGTTTT AGTTTGGATA GGCTTTTTAT AAAGTTTGTT 56217 .......... .......... .......... .......... .......... .......... 114 GATCCGACTA ATTCAAATTA ACGAGTAATG TATATTTGTT TAGTTTCTAC TTTTATAGTT 56157 .......... .......... .......... .......... .......... .......... 114 TTTTTAGCTT TTAGCTCAAC TTTTTTGTGT TATGACTAGA TTTCTGTTGA AGCGATATCG 56097 .......... .......... .......... .......... .......... .......... 114 AAAGTATTAT AATTACGTTA AAACAAAAAA AAGATACATC CTAAACACAT AAAAAAAAAT 56037 .......... .......... .......... .......... .......... .......... 114 CAAAAGTTAT GATTTAAATT TACTTGTATG ACCTTATTCG TATCATCATC TCAAAGTTAA 55977 .......... .......... .......... .......... .......... .......... 114 ATAAAAGAGA GAGTTTGCAA ATATTTAATA TAAAACATCT TAAATCCTTA TAACTTATAA 55917 .......... .......... .......... .......... .......... .......... 114 GATGTAATAT TGATTGATAT AGTTGATCGC AAAGTTAAAT TAAAAACATT TTAAATCTTC 55857 .......... .......... .......... .......... .......... .......... 114 ATAAAAGATG TATATTGATG ATATAGTTCA AACTTAAATG AAGCAATGAG GAGAATTCAT 55797 .......... .......... .......... .......... .......... .......... 114 TTCATCCACT ATAATTTATT TGATATTAAA GCGATAAAAA TTATTTTTAA AAAAATGGAC 55737 .......... .......... .......... .......... .......... .......... 114 CACAAAGTTA GGTGGATATC CCCGAAAACA TAGGAATAAT AATAATAATA TCAAAAGGAC 55677 .......... .......... .......... .......... .......... .......... 114 AAAGAAATAT TTAGCATGTC GACAAAAGCA TAAAAATGAA TAAAACGTGT GTTCATAAAA 55617 .......... .......... .......... .......... .......... .......... 114 AGAGCAGCCA CAAATCATGG TGCGCTACTT ACAATGAGAG AAAAAATAAG TAAATTTGTC 55557 .......... .......... .......... .......... .......... .......... 114 TCGTGAAGAA GAAACCAAAA GAAATCAAAT GCGATAGTGA CACGCTCAGT AGGAACAAAT 55497 .......... .......... .......... .......... .......... .......... 114 ATGTCCAAAG TAAAGACAAC AAATAATGTG TAATAATCTC AACATTATGA ATACACTATA 55437 .......... .......... .......... .......... .......... .......... 114 TCGAGCGATA TTCTTATACA TCATATCAAA CAACCGCGAT TCACACAGAG TACTGTTCCA 55377 .......... .......... .......... .......... .......... .......... 114 TACCAATCTT CTAAGCTGGC ACGTGACTCG AACTCTTTTA CTGTTCCATG ATTCCGTACA 55317 .......... .......... .......... .......... .......... .......... 114 AGAATTATGA ATAAGACATA TGTGGTTCAC ATGTATGCAG TAACTCTACT TTTTGAGCCA 55257 .......... .......... .......... .......... .......... .......... 114 TTTGGCCCAA TCTTATCCTC TGTCATAATC AGAATAACCA TCTGACTTCA CTTTTCTTCT 55197 .......... .......... .......... .......... .......... .......... 114 TTTTCAGAAA AT 55185 | || .......GCA AT 119 hqPGS_C08SLm0006K11.1-_SGN-E544787- (61376 61263) ******************************************************************************** EST sequence 127 +strand 805 n (File: SGN-E544788+) 1 TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 61 GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 121 GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 181 GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 241 AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 301 GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 361 TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 421 GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 481 GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 541 TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 601 GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 661 GTTCCCTTGT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 721 TGGGAGATTT TTGCAGATGT GGATGGGTAG TACTTCTATT TGAGATGATA ATGTGAAAGC 781 TTTGATATAT CTATTACCTT TTTTT Predicted gene structure (within gDNA segment 63177 to 61163): Exon 1 62577 61773 ( 805 n); cDNA 1 805 ( 805 n); score: 0.987 MATCH C08SLm0006K11.1- SGN-E544788+ 0.987 805 1.000 C PGS_C08SLm0006K11.1-_SGN-E544788+ (62577 61773) Alignment (genomic DNA sequence = upper lines): TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 62518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 60 GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 62458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 120 GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 62398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 180 GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 62338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 240 AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 62278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 300 GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 62218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 360 TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 62158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 420 GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 62098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 480 GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 62038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 540 TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 61978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 600 GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 61918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 660 GTTCCTTGTT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 61858 ||||| | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCCTTGT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 720 TGGGAGATTT TTGCAGATGT GGATGGTTAG TACTTCTA-T TGAGATTGAT AATGTGAAAG 61799 |||||||||| |||||||||| |||||| ||| |||||||| | ||||| |||| |||||||||| TGGGAGATTT TTGCAGATGT GGATGGGTAG TACTTCTATT TGAGA-TGAT AATGTGAAAG 779 CTTGATTATA TCTATTACCT TTTTTT 61773 ||| |||| |||||||||| |||||| CTTTGATATA TCTATTACCT TTTTTT 805 hqPGS_C08SLm0006K11.1-_SGN-E544788+ (62577 61773) ******************************************************************************** EST sequence 117 +strand 571 n (File: SGN-E307904+) 1 TAAACTCGTC AAATTTTGAT AAAATTATAG TCAAGTTCAG GTTTTTTTTG GTTTAAATGG 61 GTCTGATTAG AGGAATAGCA GTTTAAATGT TTGGTTGATT GATATTCTTA TGATTACATG 121 CCTAGTTCGT TTAGTGTTTC CTGTGTTTTT GGTACTATGG AATTTGGAGA CTCAATTTGG 181 AATTGATTTG AGCTAGGTTC AGCTTTGGGT CATTGATCAT TTCCTTATGT TCAATTTGGA 241 AGTGAGAGAT TCTGGGGTTG TAGCTGAAAA AGTGGTGAAT TGAAATTCTT TTAGTACTAG 301 TCTTGATTCC TAGATATGGT GGAAAATATT ACAGCTGAGC TTTACCTTGT GTGATTGATT 361 GTTGATTTAA GGCCTAGATA GTTGGACATG CCGAATGTAT CGAAAGCTAT GGCCTTTTTG 421 GTGTCTAATA TATTTGGTTT TTCCATTTCA ATCAAACTTC ACTAGACATT ATTGCTGTAG 481 TCTCATATTT GTTGAAGGTA TCCTATTAGG ATGGAGATTA GCCAAGGTTC CTATATTGGT 541 CGACATCTCG CGTTATAGTG TCTTTATATT G Predicted gene structure (within gDNA segment 63176 to 61396): Exon 1 62576 62006 ( 571 n); cDNA 1 571 ( 571 n); score: 0.996 MATCH C08SLm0006K11.1- SGN-E307904+ 0.996 571 1.000 C PGS_C08SLm0006K11.1-_SGN-E307904+ (62576 62006) Alignment (genomic DNA sequence = upper lines): TAAACTCGTC AAATTTTGAT AAAATTATAA TCAAGTTCAG TTTTTTTTTG GTTTAAATGG 62517 |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| TAAACTCGTC AAATTTTGAT AAAATTATAG TCAAGTTCAG GTTTTTTTTG GTTTAAATGG 60 GTCTGATTAG AGGAATAGCA GTTTAAATGT TTGGTTGATT GATATTCTTA TGATTACATG 62457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGATTAG AGGAATAGCA GTTTAAATGT TTGGTTGATT GATATTCTTA TGATTACATG 120 CCTAGTTCGT TTAGTGTTTC CTGTGTTTTT GGTACTATGG AATTTGGAGA CTCAATTTGG 62397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAGTTCGT TTAGTGTTTC CTGTGTTTTT GGTACTATGG AATTTGGAGA CTCAATTTGG 180 AATTGATTTG AGCTAGGTTC AGCTTTGGGT CATTGATCAT TTCCTTATGT TCAATTTGGA 62337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGATTTG AGCTAGGTTC AGCTTTGGGT CATTGATCAT TTCCTTATGT TCAATTTGGA 240 AGTGAGAGAT TCTGGGGTTG TAGCTGAAAA AGTGGTGAAT TGAAATTCTT TTAGTACTAG 62277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAGAGAT TCTGGGGTTG TAGCTGAAAA AGTGGTGAAT TGAAATTCTT TTAGTACTAG 300 TCTTGATTCC TAGATATGGT GGAAAATATT ACAGCTGAGC TTTACCTTGT GTGATTGATT 62217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGATTCC TAGATATGGT GGAAAATATT ACAGCTGAGC TTTACCTTGT GTGATTGATT 360 GTTGATTTAA GGCCTAGATA GTTGGACATG CCGAATGTAT CGAAAGCTAT GGCCTTTTTG 62157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATTTAA GGCCTAGATA GTTGGACATG CCGAATGTAT CGAAAGCTAT GGCCTTTTTG 420 GTGTCTAATA TATTTGGTTT TTCCATTTCA ATCAAACTTC ACTAGACATT ATTGCTGTAG 62097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCTAATA TATTTGGTTT TTCCATTTCA ATCAAACTTC ACTAGACATT ATTGCTGTAG 480 TCTCATATTT GTTGAAGGTA TCCTATTAGG ATGGAGATTA GCCAAGGTTC CTATATTGGT 62037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATATTT GTTGAAGGTA TCCTATTAGG ATGGAGATTA GCCAAGGTTC CTATATTGGT 540 CGACATCTCG CGTTATAGTG TCTTTATATT G 62006 |||||||||| |||||||||| |||||||||| | CGACATCTCG CGTTATAGTG TCTTTATATT G 571 hqPGS_C08SLm0006K11.1-_SGN-E307904+ (62576 62006) ******************************************************************************** EST sequence 113 -strand 790 n (File: SGN-E541887-) 1 TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTATTTA 61 CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 121 ACTTGGAAAA GCTAGCAGAG TCCTTAGATT GTTGTGTAGC TGAATTTTTT AGCGACAGTG 181 AAGACACAAC AACAAATACT AAAAAAATGC TAGCTTTCAA GTGTGTGTTG AATTCAAAGG 241 CCTCTGAAGA GACAATGGCC AACTTTGCTA GATGGGAGCC TGCTCATGGA CTTTTCAACT 301 TTCAACATCC ATGGGGAAAG TACCTTAAGA TCAGCGCGTC AATGCGTAGT TGTGCCTGTT 361 GCATTGAGGC ACTTACAAGC TGCATCAATC AAAAGATCAG GCTTCTGAGT TGTTAAAGAA 421 TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 481 AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 541 GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 601 ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 661 TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 721 GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 781 GGATGCTGAT Predicted gene structure (within gDNA segment 80059 to 82418): Exon 1 80669 80818 ( 150 n); cDNA 1 150 ( 150 n); score: 0.987 Intron 1 80819 80906 ( 88 n); Pd: 0.912 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 2 80907 81013 ( 107 n); cDNA 151 257 ( 107 n); score: 1.000 Intron 2 81014 81202 ( 189 n); Pd: 0.998 (s: 1.00), Pa: 0.851 (s: 1.00) Exon 3 81203 81346 ( 144 n); cDNA 258 400 ( 143 n); score: 0.993 Intron 3 81347 81428 ( 82 n); Pd: 0.977 (s: 0.98), Pa: 0.849 (s: 1.00) Exon 4 81429 81818 ( 390 n); cDNA 401 790 ( 390 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E541887- 0.996 791 1.001 C PGS_C08SLm0006K11.1+_SGN-E541887- (80669 80818,80907 81013,81203 81346,81429 81818) Alignment (genomic DNA sequence = upper lines): TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTTATTA 80728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTATTTA 60 CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 80788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 120 ACTTGGAAAA GCTAGCAGAG TCCTTAGATT GTAAGTATTT CTTGCCTAAA ATTTGGATAT 80848 |||||||||| |||||||||| |||||||||| ACTTGGAAAA GCTAGCAGAG TCCTTAGATT .......... .......... .......... 150 CAGTAACAAA ATTTCATCAT ATATTGTTTT TAAAGTTGAT CCTCAATTGT CCTTTTAGGT 80908 || .......... .......... .......... .......... .......... ........GT 152 TGTGTAGCTG AATTTTTTAG CGACAGTGAA GACACAACAA CAAATACTAA AAAAATGCTA 80968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTAGCTG AATTTTTTAG CGACAGTGAA GACACAACAA CAAATACTAA AAAAATGCTA 212 GCTTTCAAGT GTGTGTTGAA TTCAAAGGCC TCTGAAGAGA CAATGGTAAG TTTTTGCCAA 81028 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCTTTCAAGT GTGTGTTGAA TTCAAAGGCC TCTGAAGAGA CAATG..... .......... 257 TATCAATATA AGCTATGTTA CTCGGACTCT TTAAAATACC GTTGGGTGAG TGTCAGATCT 81088 .......... .......... .......... .......... .......... .......... 257 TCCAAAGGTA GTGCGTGGAT TTGTGGCACC GACTCATTTT TTGCTTCAAA ATTGATCCAA 81148 .......... .......... .......... .......... .......... .......... 257 ATAACCCCAA AACAACTTCA AATTTTACTG ATATAACATG GAATTATCTG CTAGGCCAAC 81208 |||||| .......... .......... .......... .......... .......... ....GCCAAC 263 TTTGCTAGAT GGGAGCCTGC TCATGGACTT TTCAACTTTC AACATCCATG GGGAAAGTAC 81268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTAGAT GGGAGCCTGC TCATGGACTT TTCAACTTTC AACATCCATG GGGAAAGTAC 323 CTTAAGATCA GCGCGTCAAT GCGTAGTTGT GCCTGTTGCA TTGAGGCACT TACAAGCTGC 81328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAGATCA GCGCGTCAAT GCGTAGTTGT GCCTGTTGCA TTGAGGCACT TACAAGCTGC 383 ATCAATCAAA AAGATCAGGT CGGCTAAATT CTTAATTCTA CTAAAAAATT ATACAAACTC 81388 ||||||| || |||||||| ATCAATC-AA AAGATCAG.. .......... .......... .......... .......... 400 TTTAACTAAC TAAAAGGCAA AAAATTTCAT TGTGTTATAG GCTTCTGAGT TGTTAAAGAA 81448 |||||||||| |||||||||| .......... .......... .......... .......... GCTTCTGAGT TGTTAAAGAA 420 TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 81508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 480 AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 81568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 540 GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 81628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 600 ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 81688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 660 TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 81748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 720 GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 81808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 780 GGATGCTGAT 81818 |||||||||| GGATGCTGAT 790 hqPGS_C08SLm0006K11.1+_SGN-E541887- (80669 80818,80907 81013,81203 81346,81429 81818) ******************************************************************************** EST sequence 87 -strand 505 n (File: SGN-E300972-) 1 CATGGACTTT TCAACTTTCA ACATCCATGG GGAGAGTACT TTAAGATCAG CGCGTCAATG 61 CGTAGTTGTG CCTGTTGCAT TGAGGCACTT ACAAGCTGCA TCAATCAAAA GATCAGGCTT 121 CTGAGTTGTT AAAGAATGAG CTTACTAACA CTTGCCAACA AGTAAGTTCA AGTACAAGTG 181 AGATACTGAA AGAGTTAGCT TTAAACATGA AAACAATGAG AAAATCCTCC AGGATGGATA 241 TCTTACTACA AGAAAAGAGT AACGCGATTC AAGAACTAGA AACTCTGATG GAACAACTTT 301 CAGGATTGCT TTTTATACAG CCAAAGAATG ATCAAGAAAA GCCAGTTATA AGAACCAGTA 361 GTACTAATGT TATCCCTCTT GTTGAAATCA TACCAACTGC AACATTTGCT TCTTTAGTGA 421 TCGAAATTGC CACGAGGATC GAAGGGGTTG TTGATGGTGT TGAAGAATTA TCAAAATTGG 481 CAAAATTCAA ACTTGAGGAT GCTGA Predicted gene structure (within gDNA segment 80620 to 82417): Exon 1 81230 81346 ( 117 n); cDNA 1 116 ( 116 n); score: 0.974 Intron 1 81347 81428 ( 82 n); Pd: 0.977 (s: 0.98), Pa: 0.849 (s: 1.00) Exon 2 81429 81817 ( 389 n); cDNA 117 505 ( 389 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E300972- 0.994 506 1.002 C PGS_C08SLm0006K11.1+_SGN-E300972- (81230 81346,81429 81817) Alignment (genomic DNA sequence = upper lines): CATGGACTTT TCAACTTTCA ACATCCATGG GGAAAGTACC TTAAGATCAG CGCGTCAATG 81289 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| CATGGACTTT TCAACTTTCA ACATCCATGG GGAGAGTACT TTAAGATCAG CGCGTCAATG 60 CGTAGTTGTG CCTGTTGCAT TGAGGCACTT ACAAGCTGCA TCAATCAAAA AGATCAGGTC 81349 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||||| CGTAGTTGTG CCTGTTGCAT TGAGGCACTT ACAAGCTGCA TCAATC-AAA AGATCAG... 116 GGCTAAATTC TTAATTCTAC TAAAAAATTA TACAAACTCT TTAACTAACT AAAAGGCAAA 81409 .......... .......... .......... .......... .......... .......... 116 AAATTTCATT GTGTTATAGG CTTCTGAGTT GTTAAAGAAT GAGCTTACTA ACACTTGCCA 81469 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CTTCTGAGTT GTTAAAGAAT GAGCTTACTA ACACTTGCCA 157 ACAAGTAAGT TCAAGTACAA GTGAGATACT GAAAGAGTTA GCTTTAAACA TGAAAACAAT 81529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTAAGT TCAAGTACAA GTGAGATACT GAAAGAGTTA GCTTTAAACA TGAAAACAAT 217 GAGAAAATCC TCCAGGATGG ATATCTTACT ACAAGAAAAG AGTAACGCGA TTCAAGAACT 81589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAATCC TCCAGGATGG ATATCTTACT ACAAGAAAAG AGTAACGCGA TTCAAGAACT 277 AGAAACTCTG ATGGAACAAC TTTCAGGATT GCTTTTTATA CAGCCAAAGA ATGATCAAGA 81649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACTCTG ATGGAACAAC TTTCAGGATT GCTTTTTATA CAGCCAAAGA ATGATCAAGA 337 AAAGCCAGTT ATAAGAACCA GTAGTACTAA TGTTATCCCT CTTGTTGAAA TCATACCAAC 81709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCCAGTT ATAAGAACCA GTAGTACTAA TGTTATCCCT CTTGTTGAAA TCATACCAAC 397 TGCAACATTT GCTTCTTTAG TGATCGAAAT TGCCACGAGG ATCGAAGGGG TTGTTGATGG 81769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACATTT GCTTCTTTAG TGATCGAAAT TGCCACGAGG ATCGAAGGGG TTGTTGATGG 457 TGTTGAAGAA TTATCAAAAT TGGCAAAATT CAAACTTGAG GATGCTGA 81817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGTTGAAGAA TTATCAAAAT TGGCAAAATT CAAACTTGAG GATGCTGA 505 hqPGS_C08SLm0006K11.1+_SGN-E300972- (81230 81346,81429 81817) ******************************************************************************** EST sequence 68 +strand 375 n (File: SGN-E248937+) 1 AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTGTCTTA GTTAATTGCT TTACTTTTTG 61 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 121 CGTCTCGTAT AATATGTCGG GTTTGTCAAA AGCAATTTTC GCAGTATACC TGCCCTCGAT 181 GTAATACCCG TTATTGCTCT CTGCCTTGTT ACAAGTCTCA TAGTCTTCGT TGCACCGAAT 241 CCTTTATGAG AGAGAATGTC ATGGAGGAAC TACAGCATTT GCAACCAAAT GATGGAAGTA 301 AGCAGAAAAT GCTAGACATA CTTAAACGAT TCCACTCAGA AGATGAAGCA GACATCATGG 361 ATGAAGATGA TTCCC Predicted gene structure (within gDNA segment 82696 to 86023): Exon 1 83296 83437 ( 142 n); cDNA 1 142 ( 142 n); score: 0.986 Intron 1 83438 84938 (1501 n); Pd: 0.902 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 84939 85011 ( 73 n); cDNA 143 215 ( 73 n); score: 1.000 Intron 2 85012 85199 ( 188 n); Pd: 0.999 (s: 1.00), Pa: 0.188 (s: 1.00) Exon 3 85200 85353 ( 154 n); cDNA 216 369 ( 154 n); score: 1.000 Intron 3 85354 85770 ( 417 n); Pd: 0.953 (s: 1.00), Pa: 0.882 (s: 0) Exon 4 85771 85776 ( 6 n); cDNA 370 375 ( 6 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E248937+ 0.995 375 1.000 C PGS_C08SLm0006K11.1+_SGN-E248937+ (83296 83437,84939 85011,85200 85353,85771 85776) Alignment (genomic DNA sequence = upper lines): AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 83355 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTGTCTTA GTTAATTGCT TTACTTTTTG 60 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 83415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 120 CGTCTCGTAT AATATGTCGG GTGTAAGTAT TGTTAATTTT TTAGCTTTGA TTTCAATATA 83475 |||||||||| |||||||||| || CGTCTCGTAT AATATGTCGG GT........ .......... .......... .......... 142 TTAGTTCTTT TATGCTTTAT TGTTTTCTTT AATTGATTCA ATTTTTCAGT TTTCAGCAAG 83535 .......... .......... .......... .......... .......... .......... 142 TTTTTGAGTT TTCTGCTTAA ACACTCAATT GGGATGTTAT CAATATTGGT TTTTTTGGCT 83595 .......... .......... .......... .......... .......... .......... 142 TGTCATGCTC AAATTAGAAA CTAGAAGTAA CTTACAGCTA AATGGACTTA GCAACGCATG 83655 .......... .......... .......... .......... .......... .......... 142 CTTGAGTAAT TGTAGTTTGC TTTCATTACA CATTTACACT CCACTCTTTA GGAGTGGCTA 83715 .......... .......... .......... .......... .......... .......... 142 ATGTGAAATG GACGAATAGA GCGGAATATT AATCGTGAAA TAGCATGGCA ATAGGATGTC 83775 .......... .......... .......... .......... .......... .......... 142 GAGGTCTGAA TTTTGAAGTG AATTCTTTTT TAGAAAGAGA ATTCATATTG ATGACCCCAA 83835 .......... .......... .......... .......... .......... .......... 142 CTTATTTGGG GTTGAGGGGT AGTTGATTGA TTGATTTGTT GAGGCCTTCT TTGCATCTTC 83895 .......... .......... .......... .......... .......... .......... 142 CTGACATTTA GCTTGTGTTG AGAGTTGCGA TTTGTGGGTT ATGCCATTTG TGATTTGTCA 83955 .......... .......... .......... .......... .......... .......... 142 CAGTTTCTTT TTTCTCTATT TGCATGTTGA TATAGAGAAA TGATTGTAGT TCTTTCAGAT 84015 .......... .......... .......... .......... .......... .......... 142 GACAATGAAA TTAAAAGATG GATTGTTATA CATGAACTTT AGACAAAGTT GAACAGAATT 84075 .......... .......... .......... .......... .......... .......... 142 TGGTGTACTT TGGTCACTTT GTTTGCGTTA CCACCATTTT TGGGATTTAG GAGCGGCTAT 84135 .......... .......... .......... .......... .......... .......... 142 ATGATGCCTA TCTTATAAAT GTACAATGCT TGCACAATTA TGGACGCAGG TAGGCTTAGA 84195 .......... .......... .......... .......... .......... .......... 142 GGGATCGAAG TGATTATCAG ACACGTTAGT GAATAGTCCA TCTGATTTTT TTATTGATGA 84255 .......... .......... .......... .......... .......... .......... 142 AGAGTCCATC TGAAAATTGA ACACGATACT GTACAATTTC AAGTTAAATC CTCATTGTTT 84315 .......... .......... .......... .......... .......... .......... 142 GGGGTATTCC ATTGTCTCCC TTAAAGATCC AAATTAGAAA CCTAATACTT TCCTCCTATG 84375 .......... .......... .......... .......... .......... .......... 142 ATATTGAGGC AAATATTTTT TCCTTCACTG TTGGATATGT GAAGGTTGAA ACATTTTTCA 84435 .......... .......... .......... .......... .......... .......... 142 GGTGAAAGGG GATCAATTCC TGGAATTGAA CTCATGAACA TGGAAGTTTC ACCCACATAG 84495 .......... .......... .......... .......... .......... .......... 142 TTCATCTATT CTTTAGTTTC TTCCTATTCT ACATTCTGAG CGTATGAGAA GTTTTCACTA 84555 .......... .......... .......... .......... .......... .......... 142 AGACGAATAT GTTGACTTCA TTATCATTTA CTATTGTGAC CTGCCTATTT TACATTCTAC 84615 .......... .......... .......... .......... .......... .......... 142 CAATGCTGCA CATGAGAAGT CTCATCAAAA GTTTCAGATT GTGCAAATCT CCCATCATTT 84675 .......... .......... .......... .......... .......... .......... 142 CTCTAATGGA ATCTACATCA TTTATGATAA CCAGTTTGCG CCAAAAAGCT AGCAAAAAAT 84735 .......... .......... .......... .......... .......... .......... 142 TCGCATGAGC TTAAGGTTTT CTGAGGTAAT CTTGGAAAGA CCAAAAGAAA AATTGTGTAT 84795 .......... .......... .......... .......... .......... .......... 142 CCACTGATTC CTATCGTATT TTTTTCCCTT GCTTATTCAA TATAATGGGG AAATTGAAAA 84855 .......... .......... .......... .......... .......... .......... 142 TCTGATAATT TCTTCTTAGC AAGTTGTTTG TCTATCAAAA TTGTGAGTGG CTATAATAAC 84915 .......... .......... .......... .......... .......... .......... 142 AGCAATGCTT ACTTTTTGTG CAGTTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 84975 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 179 TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAGGTAA GCGAAAAATG GCTTCTTCTA 85035 |||||||||| |||||||||| |||||||||| |||||| TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAG.... .......... .......... 215 AGTGAAGCTG GAAACTATGA TCTTTTGCAC TTCCTTTTTT TTCTTCTGAA ATCTACCTAT 85095 .......... .......... .......... .......... .......... .......... 215 GCCGAAAGTT GTTATTGTTA GCATGTGATG GCTATAAGTC CCATATATTG TGGAGAATCT 85155 .......... .......... .......... .......... .......... .......... 215 ATTGAACCAT CGTCCCTGAT TTTTCTTAAT GATATTGGTG GCAGTCTCAT AGTCTTCGTT 85215 |||||| |||||||||| .......... .......... .......... .......... ....TCTCAT AGTCTTCGTT 231 GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 85275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 291 ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAACGATT CCACTCAGAA GATGAAGCAG 85335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAACGATT CCACTCAGAA GATGAAGCAG 351 ACATCATGGA TGAAGATGGT AAGCATTGTT TTGTTGTCTG CAATAATGAA TCCATTCCTG 85395 |||||||||| |||||||| ACATCATGGA TGAAGATG.. .......... .......... .......... .......... 369 CTTGATGCGT TTCCACAGAA TCGCATTTCA TTAATTAATA TCGTGTAAAG AGGAGTAATA 85455 .......... .......... .......... .......... .......... .......... 369 TGAATCTTGT TTTTGTTTTC TACAATTTTT TTAAAAAATA ATTCATTGAT ACAACTTTTC 85515 .......... .......... .......... .......... .......... .......... 369 TTGTACTTCA CAATAAGGAT GTTTGATTTG CTCAACAAAT TTTGTTTCAG TGGATTCTTG 85575 .......... .......... .......... .......... .......... .......... 369 CTGTATCCAT GTATCATCAA TCCTGTTGCT TTGCAATGTG GTTGTATGAA TGAATCTTAT 85635 .......... .......... .......... .......... .......... .......... 369 ACTCACATTA CCTTTCACGA AACTAATGAA ATTATTGAAC TGACGTTACA TGCATTATAG 85695 .......... .......... .......... .......... .......... .......... 369 AGGACAACAT GACTTGCGTT TTTTATCTCT GCAATTCTTA ACCATAACTT TCCCTTATTG 85755 .......... .......... .......... .......... .......... .......... 369 ATCTTGTTAC ATCAGATTCC C 85776 ||||| | .......... .....ATTCC C 375 hqPGS_C08SLm0006K11.1+_SGN-E248937+ (83296 83437,84939 85011,85200 85353) ******************************************************************************** EST sequence 72 +strand 326 n (File: SGN-E369719+) 1 AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 61 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 121 CGTCTCGTAT AATATGTCGG GTTTGTCAAA AGCAATTTTC GCAGTATACC TGCCCTCGAT 181 GTAATACCCG TTATTGCTCT CTGCCTTGTT ACAAGTCTCA TAGTCTTCGT TGCACCGAAT 241 CCTTTATGAG AGAGAATGTC ATGGAGGAAC TACAGCATTT GCAACCAAAT GATGGAAGTA 301 AGCAGAAAAT GCTAGACATA CTTAAA Predicted gene structure (within gDNA segment 82696 to 85920): Exon 1 83296 83437 ( 142 n); cDNA 1 142 ( 142 n); score: 1.000 Intron 1 83438 84938 (1501 n); Pd: 0.902 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 84939 85011 ( 73 n); cDNA 143 215 ( 73 n); score: 1.000 Intron 2 85012 85199 ( 188 n); Pd: 0.999 (s: 1.00), Pa: 0.188 (s: 1.00) Exon 3 85200 85310 ( 111 n); cDNA 216 326 ( 111 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E369719+ 1.000 326 1.000 C PGS_C08SLm0006K11.1+_SGN-E369719+ (83296 83437,84939 85011,85200 85310) Alignment (genomic DNA sequence = upper lines): AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 83355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 60 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 83415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 120 CGTCTCGTAT AATATGTCGG GTGTAAGTAT TGTTAATTTT TTAGCTTTGA TTTCAATATA 83475 |||||||||| |||||||||| || CGTCTCGTAT AATATGTCGG GT........ .......... .......... .......... 142 TTAGTTCTTT TATGCTTTAT TGTTTTCTTT AATTGATTCA ATTTTTCAGT TTTCAGCAAG 83535 .......... .......... .......... .......... .......... .......... 142 TTTTTGAGTT TTCTGCTTAA ACACTCAATT GGGATGTTAT CAATATTGGT TTTTTTGGCT 83595 .......... .......... .......... .......... .......... .......... 142 TGTCATGCTC AAATTAGAAA CTAGAAGTAA CTTACAGCTA AATGGACTTA GCAACGCATG 83655 .......... .......... .......... .......... .......... .......... 142 CTTGAGTAAT TGTAGTTTGC TTTCATTACA CATTTACACT CCACTCTTTA GGAGTGGCTA 83715 .......... .......... .......... .......... .......... .......... 142 ATGTGAAATG GACGAATAGA GCGGAATATT AATCGTGAAA TAGCATGGCA ATAGGATGTC 83775 .......... .......... .......... .......... .......... .......... 142 GAGGTCTGAA TTTTGAAGTG AATTCTTTTT TAGAAAGAGA ATTCATATTG ATGACCCCAA 83835 .......... .......... .......... .......... .......... .......... 142 CTTATTTGGG GTTGAGGGGT AGTTGATTGA TTGATTTGTT GAGGCCTTCT TTGCATCTTC 83895 .......... .......... .......... .......... .......... .......... 142 CTGACATTTA GCTTGTGTTG AGAGTTGCGA TTTGTGGGTT ATGCCATTTG TGATTTGTCA 83955 .......... .......... .......... .......... .......... .......... 142 CAGTTTCTTT TTTCTCTATT TGCATGTTGA TATAGAGAAA TGATTGTAGT TCTTTCAGAT 84015 .......... .......... .......... .......... .......... .......... 142 GACAATGAAA TTAAAAGATG GATTGTTATA CATGAACTTT AGACAAAGTT GAACAGAATT 84075 .......... .......... .......... .......... .......... .......... 142 TGGTGTACTT TGGTCACTTT GTTTGCGTTA CCACCATTTT TGGGATTTAG GAGCGGCTAT 84135 .......... .......... .......... .......... .......... .......... 142 ATGATGCCTA TCTTATAAAT GTACAATGCT TGCACAATTA TGGACGCAGG TAGGCTTAGA 84195 .......... .......... .......... .......... .......... .......... 142 GGGATCGAAG TGATTATCAG ACACGTTAGT GAATAGTCCA TCTGATTTTT TTATTGATGA 84255 .......... .......... .......... .......... .......... .......... 142 AGAGTCCATC TGAAAATTGA ACACGATACT GTACAATTTC AAGTTAAATC CTCATTGTTT 84315 .......... .......... .......... .......... .......... .......... 142 GGGGTATTCC ATTGTCTCCC TTAAAGATCC AAATTAGAAA CCTAATACTT TCCTCCTATG 84375 .......... .......... .......... .......... .......... .......... 142 ATATTGAGGC AAATATTTTT TCCTTCACTG TTGGATATGT GAAGGTTGAA ACATTTTTCA 84435 .......... .......... .......... .......... .......... .......... 142 GGTGAAAGGG GATCAATTCC TGGAATTGAA CTCATGAACA TGGAAGTTTC ACCCACATAG 84495 .......... .......... .......... .......... .......... .......... 142 TTCATCTATT CTTTAGTTTC TTCCTATTCT ACATTCTGAG CGTATGAGAA GTTTTCACTA 84555 .......... .......... .......... .......... .......... .......... 142 AGACGAATAT GTTGACTTCA TTATCATTTA CTATTGTGAC CTGCCTATTT TACATTCTAC 84615 .......... .......... .......... .......... .......... .......... 142 CAATGCTGCA CATGAGAAGT CTCATCAAAA GTTTCAGATT GTGCAAATCT CCCATCATTT 84675 .......... .......... .......... .......... .......... .......... 142 CTCTAATGGA ATCTACATCA TTTATGATAA CCAGTTTGCG CCAAAAAGCT AGCAAAAAAT 84735 .......... .......... .......... .......... .......... .......... 142 TCGCATGAGC TTAAGGTTTT CTGAGGTAAT CTTGGAAAGA CCAAAAGAAA AATTGTGTAT 84795 .......... .......... .......... .......... .......... .......... 142 CCACTGATTC CTATCGTATT TTTTTCCCTT GCTTATTCAA TATAATGGGG AAATTGAAAA 84855 .......... .......... .......... .......... .......... .......... 142 TCTGATAATT TCTTCTTAGC AAGTTGTTTG TCTATCAAAA TTGTGAGTGG CTATAATAAC 84915 .......... .......... .......... .......... .......... .......... 142 AGCAATGCTT ACTTTTTGTG CAGTTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 84975 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 179 TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAGGTAA GCGAAAAATG GCTTCTTCTA 85035 |||||||||| |||||||||| |||||||||| |||||| TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAG.... .......... .......... 215 AGTGAAGCTG GAAACTATGA TCTTTTGCAC TTCCTTTTTT TTCTTCTGAA ATCTACCTAT 85095 .......... .......... .......... .......... .......... .......... 215 GCCGAAAGTT GTTATTGTTA GCATGTGATG GCTATAAGTC CCATATATTG TGGAGAATCT 85155 .......... .......... .......... .......... .......... .......... 215 ATTGAACCAT CGTCCCTGAT TTTTCTTAAT GATATTGGTG GCAGTCTCAT AGTCTTCGTT 85215 |||||| |||||||||| .......... .......... .......... .......... ....TCTCAT AGTCTTCGTT 231 GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 85275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 291 ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAA 85310 |||||||||| |||||||||| |||||||||| ||||| ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAA 326 hqPGS_C08SLm0006K11.1+_SGN-E369719+ (83296 83437,84939 85011,85200 85310) ******************************************************************************** EST sequence 135 -strand 625 n (File: SGN-E369718-) 1 AAACATGCTC ATCAGCCTTC AGACACACGG GGGGCCTGCA ATTCGCATTG GGGCTAATCA 61 ACGACACAAT AACCCTTCTT CATCTTGATA CTCCAGCCGT AGTTTGCCTG CTTTGTGACC 121 TAAGGAGACT AATCCAACAC GCAGAGAAGG ATTTGAAGTC GGAGAAGTAC TGCAAGTCCA 181 AAAGTTCTGA AATGAAAACG AAGCTCAAGT CTGCAGAAAG GAAGGTTTAT TTTATCATGT 241 GTTGGGCTCA CGAGCAGCCA AAAGAAGCAT GGTCTTCCAT AGCAGCCATT GTCGAGGCAG 301 AGAAGAGCCG ACTAGTTGAA TTCGTAGGGA GTAAAACAAG TGTTCCAAAA ATGACGAAAG 361 TACAGAGTGA GGGCAGGCCT CTGATTAAGG AGGTTGAATA ACTGTCTGTT CCTTCTGCAT 421 GACAAGCTGC AGCAGATAAC ACAAGATCAG TGATGCTTGC AAAAATGTTA AGTTCAGATC 481 ACTGAGTTTT GACTTTGTAT AATTGCCTGA ATTATTTTAT TCACTTTCTC TTTGGAACTT 541 TTTCATGGGC CACTGAAACA ATTTAAGAGA AGAAAAGCAA AAGCTTATAT GGAAAAGAGA 601 TAATTTACTT ATCTAAAAAA AAAAA Predicted gene structure (within gDNA segment 85811 to 87735): Exon 1 86421 87035 ( 615 n); cDNA 1 615 ( 615 n); score: 1.000 PPA cDNA 616 625 MATCH C08SLm0006K11.1+ SGN-E369718- 1.000 615 0.984 C PGS_C08SLm0006K11.1+_SGN-E369718- (86421 87035) Alignment (genomic DNA sequence = upper lines): AAACATGCTC ATCAGCCTTC AGACACACGG GGGGCCTGCA ATTCGCATTG GGGCTAATCA 86480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATGCTC ATCAGCCTTC AGACACACGG GGGGCCTGCA ATTCGCATTG GGGCTAATCA 60 ACGACACAAT AACCCTTCTT CATCTTGATA CTCCAGCCGT AGTTTGCCTG CTTTGTGACC 86540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGACACAAT AACCCTTCTT CATCTTGATA CTCCAGCCGT AGTTTGCCTG CTTTGTGACC 120 TAAGGAGACT AATCCAACAC GCAGAGAAGG ATTTGAAGTC GGAGAAGTAC TGCAAGTCCA 86600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGAGACT AATCCAACAC GCAGAGAAGG ATTTGAAGTC GGAGAAGTAC TGCAAGTCCA 180 AAAGTTCTGA AATGAAAACG AAGCTCAAGT CTGCAGAAAG GAAGGTTTAT TTTATCATGT 86660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTCTGA AATGAAAACG AAGCTCAAGT CTGCAGAAAG GAAGGTTTAT TTTATCATGT 240 GTTGGGCTCA CGAGCAGCCA AAAGAAGCAT GGTCTTCCAT AGCAGCCATT GTCGAGGCAG 86720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGCTCA CGAGCAGCCA AAAGAAGCAT GGTCTTCCAT AGCAGCCATT GTCGAGGCAG 300 AGAAGAGCCG ACTAGTTGAA TTCGTAGGGA GTAAAACAAG TGTTCCAAAA ATGACGAAAG 86780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAGCCG ACTAGTTGAA TTCGTAGGGA GTAAAACAAG TGTTCCAAAA ATGACGAAAG 360 TACAGAGTGA GGGCAGGCCT CTGATTAAGG AGGTTGAATA ACTGTCTGTT CCTTCTGCAT 86840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAGTGA GGGCAGGCCT CTGATTAAGG AGGTTGAATA ACTGTCTGTT CCTTCTGCAT 420 GACAAGCTGC AGCAGATAAC ACAAGATCAG TGATGCTTGC AAAAATGTTA AGTTCAGATC 86900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGCTGC AGCAGATAAC ACAAGATCAG TGATGCTTGC AAAAATGTTA AGTTCAGATC 480 ACTGAGTTTT GACTTTGTAT AATTGCCTGA ATTATTTTAT TCACTTTCTC TTTGGAACTT 86960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAGTTTT GACTTTGTAT AATTGCCTGA ATTATTTTAT TCACTTTCTC TTTGGAACTT 540 TTTCATGGGC CACTGAAACA ATTTAAGAGA AGAAAAGCAA AAGCTTATAT GGAAAAGAGA 87020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATGGGC CACTGAAACA ATTTAAGAGA AGAAAAGCAA AAGCTTATAT GGAAAAGAGA 600 TAATTTACTT ATCTA 87035 |||||||||| ||||| TAATTTACTT ATCTA 615 hqPGS_C08SLm0006K11.1+_SGN-E369718- (86421 87035) ******************************************************************************** EST sequence 84 +strand 556 n (File: SGN-E303026+) 1 GAGTTTTTTT TTTTTTTTTT GTCATTGCGG AGAACAGTTA GAGAGCGGTC ATCTGACAAT 61 TCTTAATGAA CACCCAACAA GCAAAAACTT TCACCGGAAA ATTGTAGAGG AATCGGAAAA 121 AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG TGGAAGACAC 181 CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG CGATCTCTGT 241 TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA CCACCTCCGA 301 TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG CCGGTGGCAG 361 CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA TCATTTCTGG 421 CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG GTGGTGTACT 481 TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA AATAGTGAAT CCTCTTCACC 541 TTTGGTATCT GTAACT Predicted gene structure (within gDNA segment 86537 to 88572): Exon 1 87415 87962 ( 548 n); cDNA 9 556 ( 548 n); score: 0.980 MATCH C08SLm0006K11.1+ SGN-E303026+ 0.980 548 0.986 C PGS_C08SLm0006K11.1+_SGN-E303026+ (87415 87962) Alignment (genomic DNA sequence = upper lines): TTTTCTTTTA TTGTCATTTC ATAGAACAGT TAGAGAGCAA TCATCGGAAA ATTCTTAATG 87474 |||| |||| |||||||| | |||||||| |||||||| ||||| || | |||||||||| TTTTTTTTTT TTGTCATTGC GGAGAACAGT TAGAGAGCGG TCATCTGACA ATTCTTAATG 68 AACACATAAC AAGCAAAAAC TTTCACCGGA AAATTGTAGA GGAATCGGAA AAAATGGGTG 87534 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACCCAAC AAGCAAAAAC TTTCACCGGA AAATTGTAGA GGAATCGGAA AAAATGGGTG 128 ATGTAGCCGA TAAGATAGCA TATTTTCAAG CGATCACCGG GGTGGAAGAC ACCGATTTGT 87594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCCGA TAAGATAGCA TATTTTCAAG CGATCACCGG GGTGGAAGAC ACCGATTTGT 188 GCACTGAGAT CCTCGCCGCC CATGGCTGGG ATCTCGAACT GGCGATCTCT GTTTTTACCT 87654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTGAGAT CCTCGCCGCC CATGGCTGGG ATCTCGAACT GGCGATCTCT GTTTTTACCT 248 CGCAAAATCA CCATCCTGCT ACTGAGTATG CATCCGAACC CACCACCTCC GATACACCAC 87714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAAAATCA CCATCCTGCT ACTGAGTATG CATCCGAACC CACCACCTCC GATACACCAC 308 CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT TGCCGGTGGC AGCGGCGGAC 87774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT TGCCGGTGGC AGCGGCGGAC 368 CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC CATCATTTCT GGCAGTCTAG 87834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC CATCATTTCT GGCAGTCTAG 428 GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC AGGTGGTGTA CTTTCGTATT 87894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC AGGTGGTGTA CTTTCGTATT 488 CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA ATCCTCTTCA CCTTTGGTAT 87954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA ATCCTCTTCA CCTTTGGTAT 548 CTGTAACT 87962 |||||||| CTGTAACT 556 hqPGS_C08SLm0006K11.1+_SGN-E303026+ (87415 87962) ******************************************************************************** EST sequence 53 +strand 419 n (File: SGN-E274403+) 1 AGAGAGCAAT CATCGGAAAA TTCTTAATGA ACACGTGGGA GGGAGAAACT TTCACCGGAA 61 AATTGTAGAG GAATCGGAAA AAATGGGTGA TGTAGCCGAT AAGATAGCAT ATTTTCAAGC 121 GATCACCGGG GTGGAAGACA CCGATTTGTG CACTGAGATC CTCGCCGCCC ATGGCTGGGA 181 TCTCGAACTG GCGATCTCTG TTTTTACCTC GCAAAATCAC CATCCTGCTA CTGAGTATGC 241 ATCCGAACCC ACCACCTCCG ATTCACCACC AACGAGCACG AATCAACCAC CGGCAGAAAC 301 TGGGCTCGTT GCCGGTGGCA GCGGCGGACC GCCGGGATTA GCTCGGAAGA TTATTACTCT 361 CCCCTTCTCC ATCATTTCTG GCAATCTAGG ATTGATTTCA AGTGCTGTGG GGTTGGGTG Predicted gene structure (within gDNA segment 86846 to 88474): Exon 1 87446 87864 ( 419 n); cDNA 1 419 ( 419 n); score: 0.974 MATCH C08SLm0006K11.1+ SGN-E274403+ 0.974 419 1.000 C PGS_C08SLm0006K11.1+_SGN-E274403+ (87446 87864) Alignment (genomic DNA sequence = upper lines): AGAGAGCAAT CATCGGAAAA TTCTTAATGA ACACATAACA AGCAAAAACT TTCACCGGAA 87505 |||||||||| |||||||||| |||||||||| |||| | | | | ||||| |||||||||| AGAGAGCAAT CATCGGAAAA TTCTTAATGA ACACGTGGGA GGGAGAAACT TTCACCGGAA 60 AATTGTAGAG GAATCGGAAA AAATGGGTGA TGTAGCCGAT AAGATAGCAT ATTTTCAAGC 87565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTAGAG GAATCGGAAA AAATGGGTGA TGTAGCCGAT AAGATAGCAT ATTTTCAAGC 120 GATCACCGGG GTGGAAGACA CCGATTTGTG CACTGAGATC CTCGCCGCCC ATGGCTGGGA 87625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCACCGGG GTGGAAGACA CCGATTTGTG CACTGAGATC CTCGCCGCCC ATGGCTGGGA 180 TCTCGAACTG GCGATCTCTG TTTTTACCTC GCAAAATCAC CATCCTGCTA CTGAGTATGC 87685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGAACTG GCGATCTCTG TTTTTACCTC GCAAAATCAC CATCCTGCTA CTGAGTATGC 240 ATCCGAACCC ACCACCTCCG ATACACCACC AACGAGCACG AATCAACCAC CGGCAGAAAC 87745 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATCCGAACCC ACCACCTCCG ATTCACCACC AACGAGCACG AATCAACCAC CGGCAGAAAC 300 TGGGCTCGTT GCCGGTGGCA GCGGCGGACC GCCGGGATTA GCTTGGAAGA TTATTACTCT 87805 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGGGCTCGTT GCCGGTGGCA GCGGCGGACC GCCGGGATTA GCTCGGAAGA TTATTACTCT 360 CCCCTTCTCC ATCATTTCTG GCAGTCTAGG ATTGATTTCA GGTGCTGTGG GGTTGGGTG 87864 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| ||||||||| CCCCTTCTCC ATCATTTCTG GCAATCTAGG ATTGATTTCA AGTGCTGTGG GGTTGGGTG 419 hqPGS_C08SLm0006K11.1+_SGN-E274403+ (87446 87864) ******************************************************************************** EST sequence 73 +strand 736 n (File: SGN-E346310+) 1 GAGAGCAATC ATCGGAAAAT TCTTAATGAA CACATAACAA GCAAAAACTT TCACCGGAAA 61 ATTGTAGAGG AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG 121 ATCACCGGGG TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT 181 CTCGAACTGG CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA 241 TCCGAACCCA CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT 301 GGGCTCGTTG CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC 361 CCCTTCTCCA TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA 421 TGGGCGGCAG GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA 481 AATAGTGAAT CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT 541 TTCGTGGATA GTTTTGATAG GGATTTTGGG AGTATTAGGC CGAGTTTTAT TGCTGAAGGT 601 TTTATGGATG CTTTGCAGAG GTCTAGGCAT GAGTTCAAGC TGNTTTTTGT GTATTTACAT 661 TCGCCTGAGC ATTCAGATAC CCCTGTGTTT TGTGAAAGGA CTTTGTGTAA TGAAGCATTG 721 GTAGCATTTA TCAATG Predicted gene structure (within gDNA segment 86847 to 88792): Exon 1 87447 88182 ( 736 n); cDNA 1 736 ( 736 n); score: 0.997 MATCH C08SLm0006K11.1+ SGN-E346310+ 0.997 736 1.000 C PGS_C08SLm0006K11.1+_SGN-E346310+ (87447 88182) Alignment (genomic DNA sequence = upper lines): GAGAGCAATC ATCGGAAAAT TCTTAATGAA CACATAACAA GCAAAAACTT TCACCGGAAA 87506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCAATC ATCGGAAAAT TCTTAATGAA CACATAACAA GCAAAAACTT TCACCGGAAA 60 ATTGTAGAGG AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG 87566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTAGAGG AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG 120 ATCACCGGGG TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT 87626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACCGGGG TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT 180 CTCGAACTGG CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA 87686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAACTGG CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA 240 TCCGAACCCA CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT 87746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGAACCCA CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT 300 GGGCTCGTTG CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC 87806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTCGTTG CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC 360 CCCTTCTCCA TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA 87866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTCTCCA TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA 420 TGGGCGGCAG GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA 87926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCGGCAG GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA 480 AATAGTGAAT CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT 87986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGTGAAT CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT 540 TTCGTGGATA GTTTTGATAG GGATTTTGGG AGTATTAGGC CGAGTTTTAT TGCTGAAGGT 88046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTGGATA GTTTTGATAG GGATTTTGGG AGTATTAGGC CGAGTTTTAT TGCTGAAGGT 600 TTTATGGATG CTTTGCAGAG GTCTAGGCAT GAGTTCAAGC TGTTTTTTGT GTATTTACAT 88106 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TTTATGGATG CTTTGCAGAG GTCTAGGCAT GAGTTCAAGC TGNTTTTTGT GTATTTACAT 660 TCGCCTGAGC ATCCAGATAC CCCTGTGTTT TGTGAAAGGA CTTTGTGTAA TGAAGCATTG 88166 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCTGAGC ATTCAGATAC CCCTGTGTTT TGTGAAAGGA CTTTGTGTAA TGAAGCATTG 720 GTAGCATTTA TCAATG 88182 |||||||||| |||||| GTAGCATTTA TCAATG 736 hqPGS_C08SLm0006K11.1+_SGN-E346310+ (87447 88182) ******************************************************************************** EST sequence 20 +strand 572 n (File: SGN-E303164+) 1 GAGCAATCAT CGGAAAATTC TTAATGAACA CATAACAAGC AAAAACTTTC ACCGGAAAAT 61 TGTAGAGGAA TCGGAAAAAA TGGGTGATGT AGCCGATAAG ATAGCATATT TTCAAGCGAT 121 CACCGGGGTG GAAGACACCG ATTTGTGCAC TGAGATCCTC GCCGCCCATG GCTGGGATCT 181 CGAACTGGCG ATCTCTGTTT TTACCTCGCA AAATCACCAT CCTGCTACTG AGTATGCATC 241 CGAACCCACC ACCTCCGATA CACCACCAAC GAGCACGAAT CAACCACCGG CAGAAACTGG 301 GCTCGTTGCC GGTGGCAGCG GCGGACCGCC GGGATTAGCT TGGAAGATTA TTACTCTCCC 361 CTTCTCCATC ATTTCTGGCA GTCTAGGATT GATTTCAGGT GCTGTGGGGT TGGGTGTATG 421 GGCGGCAGGT GGTGTACTTT CGTATTCGTT GAGAATGATC GGTTTCAATT TGGGGCGAAA 481 TAGTGAATCC TCTTCACCTT TGGTATCTGT AACTGCATCA ACAGCGGAGG CAATGAGTTT 541 CGTGGATAGT TTTGATAGGG ATTTTGGGAG TA Predicted gene structure (within gDNA segment 86849 to 88630): Exon 1 87449 88020 ( 572 n); cDNA 1 572 ( 572 n); score: 0.998 MATCH C08SLm0006K11.1+ SGN-E303164+ 0.998 572 1.000 C PGS_C08SLm0006K11.1+_SGN-E303164+ (87449 88020) Alignment (genomic DNA sequence = upper lines): GAGCAATCAT CGGAAAATTC TTAATGAACA CATAACAAGC AAAAACTTTC ACCGGAAAAT 87508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAATCAT CGGAAAATTC TTAATGAACA CATAACAAGC AAAAACTTTC ACCGGAAAAT 60 TGTAGAGGAA TCGGAAAAAA TGGGTGATGT AGCCGATAAG ATAGCATATT TTCAAGCGAT 87568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGAGGAA TCGGAAAAAA TGGGTGATGT AGCCGATAAG ATAGCATATT TTCAAGCGAT 120 CACCGGGGTG GAAGACACCG ATTTGTGCAC TGAGATCCTC GCCGCCCATG GCTGGGATCT 87628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGGGGTG GAAGACACCG ATTTGTGCAC TGAGATCCTC GCCGCCCATG GCTGGGATCT 180 CGAACTGGCG ATCTCTGTTT TTACCTCGCA AAATCACCAT CCTGCTACTG AGTATGCATC 87688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACTGGCG ATCTCTGTTT TTACCTCGCA AAATCACCAT CCTGCTACTG AGTATGCATC 240 CGAACCCACC ACCTCCGATA CACCACCAAC GAGCACGAAT CAACCACCGG CAGAAACTGG 87748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCCACC ACCTCCGATA CACCACCAAC GAGCACGAAT CAACCACCGG CAGAAACTGG 300 GCTCGTTGCC GGTGGCAGCG GCGGACCGCC GGGATTAGCT TGGAAGATTA TTACTCTCCC 87808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGTTGCC GGTGGCAGCG GCGGACCGCC GGGATTAGCT TGGAAGATTA TTACTCTCCC 360 CTTCTCCATC ATTTCTGGCA GTCTAGGATT GATTTCAGGT GCTGTGGGGT TGGGTGTATG 87868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTCCATC ATTTCTGGCA GTCTAGGATT GATTTCAGGT GCTGTGGGGT TGGGTGTATG 420 GGCGGCAGGT GGTGTACTTT CGTATTCGTT GAGAATGATC GGTTTCAATT TGGGGCGAAA 87928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGGCAGGT GGTGTACTTT CGTATTCGTT GAGAATGATC GGTTTCAATT TGGGGCGAAA 480 TAGTGAATCC TCTTCACCTT TGGTATCTGT AACTGCATCA GCAGCGGAGG CAATGAGTTT 87988 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TAGTGAATCC TCTTCACCTT TGGTATCTGT AACTGCATCA ACAGCGGAGG CAATGAGTTT 540 CGTGGATAGT TTTGATAGGG ATTTTGGGAG TA 88020 |||||||||| |||||||||| |||||||||| || CGTGGATAGT TTTGATAGGG ATTTTGGGAG TA 572 hqPGS_C08SLm0006K11.1+_SGN-E303164+ (87449 88020) ******************************************************************************** EST sequence 85 +strand 564 n (File: SGN-E302454+) 1 ATCGGAAAAT TCTTAATGAA CACATAACAA GCGAAAACTT TCACCGGAAA ATTGTAGAGG 61 AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 121 TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 181 CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 241 CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 301 CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 361 TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 421 GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA AATAGTGAAT 481 CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT TTCGTGGATA 541 GTTTTGATAG GGATTTTGGG AGTA Predicted gene structure (within gDNA segment 86857 to 88630): Exon 1 87457 88020 ( 564 n); cDNA 1 564 ( 564 n); score: 0.998 MATCH C08SLm0006K11.1+ SGN-E302454+ 0.998 564 1.000 C PGS_C08SLm0006K11.1+_SGN-E302454+ (87457 88020) Alignment (genomic DNA sequence = upper lines): ATCGGAAAAT TCTTAATGAA CACATAACAA GCAAAAACTT TCACCGGAAA ATTGTAGAGG 87516 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATCGGAAAAT TCTTAATGAA CACATAACAA GCGAAAACTT TCACCGGAAA ATTGTAGAGG 60 AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 87576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 120 TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 87636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 180 CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 87696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 240 CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 87756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 300 CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 87816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 360 TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 87876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 420 GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA AATAGTGAAT 87936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGTACT TTCGTATTCG TTGAGAATGA TCGGTTTCAA TTTGGGGCGA AATAGTGAAT 480 CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT TTCGTGGATA 87996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTCACC TTTGGTATCT GTAACTGCAT CAGCAGCGGA GGCAATGAGT TTCGTGGATA 540 GTTTTGATAG GGATTTTGGG AGTA 88020 |||||||||| |||||||||| |||| GTTTTGATAG GGATTTTGGG AGTA 564 hqPGS_C08SLm0006K11.1+_SGN-E302454+ (87457 88020) ******************************************************************************** EST sequence 52 +strand 644 n (File: SGN-E208126+) 1 AAAATTCTTA ATGAACACAT AACAAGCAAA AACTTTCACC GGAAAATTGT AGAGGAATCG 61 GAAAAAATGG GTGATGTAGC CGATAAGATA GCATATTTTC AAGCGATCAC CGGGGTGGAA 121 GACACCGATT TGTGCACTGA GATCCTCGCC GCCCATGGCT GGGATCTCGA ACTGGCGATC 181 TCTGTTTTTA CCTCGCAAAA TCACCATCCT GCTACTGAGT ATGCATCCGA ACCCACCACC 241 TCCGATACAC CACCAACGAG CACGAATCAA CCACCGGCAG AAACTGGGCT CGTTGCCGGT 301 GGCAGCGGCG GACCGCCGGG ATTAGCTTGG AAGATTATTA CTCTCCCCTT CTCCATCATT 361 TCTGGCAGTC TAGGATTGAT TTCAGGTGCT GTGGGGTTGG GTGTATGGGC GGCAGGTGGT 421 GTACTTTCGT ATTCGTTGAG AATGATCGGT TTCAATTTGG GGCGAAATAG TGAATCCTCT 481 TCACCTTTGG TATCTGTAAC TGCATCAGCA GCGGAGGCAA TGAGTTTCGT GGATAGTTTT 541 GATAGGGATT TTGGGAGTAT TAGGCCGAGT TTTATTGCTG AAGGTTTTAT GGATGCTTTG 601 CAGAGGTCTA GGCATGAGTT CAAGCTGTTT TTTGTGTATT TACA Predicted gene structure (within gDNA segment 86862 to 88715): Exon 1 87462 88105 ( 644 n); cDNA 1 644 ( 644 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E208126+ 1.000 644 1.000 C PGS_C08SLm0006K11.1+_SGN-E208126+ (87462 88105) Alignment (genomic DNA sequence = upper lines): AAAATTCTTA ATGAACACAT AACAAGCAAA AACTTTCACC GGAAAATTGT AGAGGAATCG 87521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTCTTA ATGAACACAT AACAAGCAAA AACTTTCACC GGAAAATTGT AGAGGAATCG 60 GAAAAAATGG GTGATGTAGC CGATAAGATA GCATATTTTC AAGCGATCAC CGGGGTGGAA 87581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAATGG GTGATGTAGC CGATAAGATA GCATATTTTC AAGCGATCAC CGGGGTGGAA 120 GACACCGATT TGTGCACTGA GATCCTCGCC GCCCATGGCT GGGATCTCGA ACTGGCGATC 87641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACCGATT TGTGCACTGA GATCCTCGCC GCCCATGGCT GGGATCTCGA ACTGGCGATC 180 TCTGTTTTTA CCTCGCAAAA TCACCATCCT GCTACTGAGT ATGCATCCGA ACCCACCACC 87701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTTTTA CCTCGCAAAA TCACCATCCT GCTACTGAGT ATGCATCCGA ACCCACCACC 240 TCCGATACAC CACCAACGAG CACGAATCAA CCACCGGCAG AAACTGGGCT CGTTGCCGGT 87761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGATACAC CACCAACGAG CACGAATCAA CCACCGGCAG AAACTGGGCT CGTTGCCGGT 300 GGCAGCGGCG GACCGCCGGG ATTAGCTTGG AAGATTATTA CTCTCCCCTT CTCCATCATT 87821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGCGGCG GACCGCCGGG ATTAGCTTGG AAGATTATTA CTCTCCCCTT CTCCATCATT 360 TCTGGCAGTC TAGGATTGAT TTCAGGTGCT GTGGGGTTGG GTGTATGGGC GGCAGGTGGT 87881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGCAGTC TAGGATTGAT TTCAGGTGCT GTGGGGTTGG GTGTATGGGC GGCAGGTGGT 420 GTACTTTCGT ATTCGTTGAG AATGATCGGT TTCAATTTGG GGCGAAATAG TGAATCCTCT 87941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTTTCGT ATTCGTTGAG AATGATCGGT TTCAATTTGG GGCGAAATAG TGAATCCTCT 480 TCACCTTTGG TATCTGTAAC TGCATCAGCA GCGGAGGCAA TGAGTTTCGT GGATAGTTTT 88001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCTTTGG TATCTGTAAC TGCATCAGCA GCGGAGGCAA TGAGTTTCGT GGATAGTTTT 540 GATAGGGATT TTGGGAGTAT TAGGCCGAGT TTTATTGCTG AAGGTTTTAT GGATGCTTTG 88061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGGGATT TTGGGAGTAT TAGGCCGAGT TTTATTGCTG AAGGTTTTAT GGATGCTTTG 600 CAGAGGTCTA GGCATGAGTT CAAGCTGTTT TTTGTGTATT TACA 88105 |||||||||| |||||||||| |||||||||| |||||||||| |||| CAGAGGTCTA GGCATGAGTT CAAGCTGTTT TTTGTGTATT TACA 644 hqPGS_C08SLm0006K11.1+_SGN-E208126+ (87462 88105) ******************************************************************************** EST sequence 38 +strand 383 n (File: SGN-E243275+) 1 AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 61 TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 121 CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 181 CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 241 CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 301 TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 361 GTGGTGTACT TTCGTATTCG TTG Predicted gene structure (within gDNA segment 86917 to 88509): Exon 1 87517 87899 ( 383 n); cDNA 1 383 ( 383 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E243275+ 1.000 383 1.000 C PGS_C08SLm0006K11.1+_SGN-E243275+ (87517 87899) Alignment (genomic DNA sequence = upper lines): AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 87576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGGAAAA AATGGGTGAT GTAGCCGATA AGATAGCATA TTTTCAAGCG ATCACCGGGG 60 TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 87636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGACAC CGATTTGTGC ACTGAGATCC TCGCCGCCCA TGGCTGGGAT CTCGAACTGG 120 CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 87696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCTGT TTTTACCTCG CAAAATCACC ATCCTGCTAC TGAGTATGCA TCCGAACCCA 180 CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 87756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCTCCGA TACACCACCA ACGAGCACGA ATCAACCACC GGCAGAAACT GGGCTCGTTG 240 CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 87816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTGGCAG CGGCGGACCG CCGGGATTAG CTTGGAAGAT TATTACTCTC CCCTTCTCCA 300 TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 87876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCTGG CAGTCTAGGA TTGATTTCAG GTGCTGTGGG GTTGGGTGTA TGGGCGGCAG 360 GTGGTGTACT TTCGTATTCG TTG 87899 |||||||||| |||||||||| ||| GTGGTGTACT TTCGTATTCG TTG 383 hqPGS_C08SLm0006K11.1+_SGN-E243275+ (87517 87899) ******************************************************************************** EST sequence 70 +strand 585 n (File: SGN-E275216+) 1 TGAGATCCTC GCCGCCCATG GCTGGGATCT CGAACTGGCG ATCTCTGTTT TTACCTCGCA 61 AAATCACCAT CCTGCTACTG AGTATGCATC CGAACCCACC ACCTCCGATA CACCACCAAC 121 GAGCACGAAT CAACCACCGG CAGAAACTGG GCTCGTTGCC GGTGGCAGCG GCGGACCGCC 181 GGGATTAGCT TGGAAGATTA TTACTCTCCC CTTCTCCATC ATTTCTGGCA GTCTAGGATT 241 GATTTCAGGT GCTGTGGGGT TGGGTGTATG GGCGGCAGGT GGTGTACTTT CGTATTCGTT 301 GAGAATGATC GGTTTCAATT TGGGGCGAAA TAGTGAATCC TCTTCACCTT TGGTATCTGT 361 AACTGCATCA GCAGCGGAGG CAATGAGTTT CGTGGATAGT TTTGATAGGG ATTTTGGGAG 421 TATTAGGCCG AGTTTTATTG CTGAAGGTTT TATGGATGCT TTGCAGAGGT CTAGGCATGA 481 GTTCAAGCTG TTTTTTGTGT ATTTACATTC GCCTGAGCAT CCAGATACCC CTGTGTTTTG 541 TGAAAGGACT TTGTGTAATG AAGCATTGGT AGCATTTATC AATGA Predicted gene structure (within gDNA segment 86999 to 88793): Exon 1 87599 88183 ( 585 n); cDNA 1 585 ( 585 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E275216+ 1.000 585 1.000 C PGS_C08SLm0006K11.1+_SGN-E275216+ (87599 88183) Alignment (genomic DNA sequence = upper lines): TGAGATCCTC GCCGCCCATG GCTGGGATCT CGAACTGGCG ATCTCTGTTT TTACCTCGCA 87658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATCCTC GCCGCCCATG GCTGGGATCT CGAACTGGCG ATCTCTGTTT TTACCTCGCA 60 AAATCACCAT CCTGCTACTG AGTATGCATC CGAACCCACC ACCTCCGATA CACCACCAAC 87718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCACCAT CCTGCTACTG AGTATGCATC CGAACCCACC ACCTCCGATA CACCACCAAC 120 GAGCACGAAT CAACCACCGG CAGAAACTGG GCTCGTTGCC GGTGGCAGCG GCGGACCGCC 87778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCACGAAT CAACCACCGG CAGAAACTGG GCTCGTTGCC GGTGGCAGCG GCGGACCGCC 180 GGGATTAGCT TGGAAGATTA TTACTCTCCC CTTCTCCATC ATTTCTGGCA GTCTAGGATT 87838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTAGCT TGGAAGATTA TTACTCTCCC CTTCTCCATC ATTTCTGGCA GTCTAGGATT 240 GATTTCAGGT GCTGTGGGGT TGGGTGTATG GGCGGCAGGT GGTGTACTTT CGTATTCGTT 87898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTCAGGT GCTGTGGGGT TGGGTGTATG GGCGGCAGGT GGTGTACTTT CGTATTCGTT 300 GAGAATGATC GGTTTCAATT TGGGGCGAAA TAGTGAATCC TCTTCACCTT TGGTATCTGT 87958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATGATC GGTTTCAATT TGGGGCGAAA TAGTGAATCC TCTTCACCTT TGGTATCTGT 360 AACTGCATCA GCAGCGGAGG CAATGAGTTT CGTGGATAGT TTTGATAGGG ATTTTGGGAG 88018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCATCA GCAGCGGAGG CAATGAGTTT CGTGGATAGT TTTGATAGGG ATTTTGGGAG 420 TATTAGGCCG AGTTTTATTG CTGAAGGTTT TATGGATGCT TTGCAGAGGT CTAGGCATGA 88078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGGCCG AGTTTTATTG CTGAAGGTTT TATGGATGCT TTGCAGAGGT CTAGGCATGA 480 GTTCAAGCTG TTTTTTGTGT ATTTACATTC GCCTGAGCAT CCAGATACCC CTGTGTTTTG 88138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGCTG TTTTTTGTGT ATTTACATTC GCCTGAGCAT CCAGATACCC CTGTGTTTTG 540 TGAAAGGACT TTGTGTAATG AAGCATTGGT AGCATTTATC AATGA 88183 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAAAGGACT TTGTGTAATG AAGCATTGGT AGCATTTATC AATGA 585 hqPGS_C08SLm0006K11.1+_SGN-E275216+ (87599 88183) ******************************************************************************** EST sequence 27 +strand 551 n (File: SGN-E268865+) 1 CACCACCTCC GATACACCAC CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT 61 TGCCGGTGGC AGCGGCGGAC CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC 121 CATCATTTCT GGCAGTCTAG GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC 181 AGGTGGTGTA CTTTCGTATT CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA 241 ATCCTCTTCA CCTTTGGTAT CTGTAACTGC ATCAGCAGCG GAGGCAATGA GTTTCGTGGA 301 TAGTTTTGAT AGGGATTTTG GGAGTATTAG GCCGAGTTTT ATTGCTGAAG GTTTTATGGA 361 TGCTTTGCAG AGGTCTAGGC ATGAGTTCAA GCTGTTTTTT GTGTATTTAC ATTCGCCTGA 421 GCATCCAGAT ACCCCTGTGT TTTGTGAAAG GACTTTGTGT AATGAAGCAT TGGTAGCATT 481 TATCAATGAG AATTTTGTTG CTTGGGGCGG GAGTATTAGA GCTAGTGAGG GTTTCAAGAT 541 GAGTAATAGC T Predicted gene structure (within gDNA segment 87095 to 88855): Exon 1 87695 88245 ( 551 n); cDNA 1 551 ( 551 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E268865+ 1.000 551 1.000 C PGS_C08SLm0006K11.1+_SGN-E268865+ (87695 88245) Alignment (genomic DNA sequence = upper lines): CACCACCTCC GATACACCAC CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT 87754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCACCTCC GATACACCAC CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT 60 TGCCGGTGGC AGCGGCGGAC CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC 87814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGGTGGC AGCGGCGGAC CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC 120 CATCATTTCT GGCAGTCTAG GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC 87874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATTTCT GGCAGTCTAG GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC 180 AGGTGGTGTA CTTTCGTATT CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA 87934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGTGTA CTTTCGTATT CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA 240 ATCCTCTTCA CCTTTGGTAT CTGTAACTGC ATCAGCAGCG GAGGCAATGA GTTTCGTGGA 87994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTCTTCA CCTTTGGTAT CTGTAACTGC ATCAGCAGCG GAGGCAATGA GTTTCGTGGA 300 TAGTTTTGAT AGGGATTTTG GGAGTATTAG GCCGAGTTTT ATTGCTGAAG GTTTTATGGA 88054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTTGAT AGGGATTTTG GGAGTATTAG GCCGAGTTTT ATTGCTGAAG GTTTTATGGA 360 TGCTTTGCAG AGGTCTAGGC ATGAGTTCAA GCTGTTTTTT GTGTATTTAC ATTCGCCTGA 88114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTGCAG AGGTCTAGGC ATGAGTTCAA GCTGTTTTTT GTGTATTTAC ATTCGCCTGA 420 GCATCCAGAT ACCCCTGTGT TTTGTGAAAG GACTTTGTGT AATGAAGCAT TGGTAGCATT 88174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCCAGAT ACCCCTGTGT TTTGTGAAAG GACTTTGTGT AATGAAGCAT TGGTAGCATT 480 TATCAATGAG AATTTTGTTG CTTGGGGCGG GAGTATTAGA GCTAGTGAGG GTTTCAAGAT 88234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAATGAG AATTTTGTTG CTTGGGGCGG GAGTATTAGA GCTAGTGAGG GTTTCAAGAT 540 GAGTAATAGC T 88245 |||||||||| | GAGTAATAGC T 551 hqPGS_C08SLm0006K11.1+_SGN-E268865+ (87695 88245) ******************************************************************************** EST sequence 55 +strand 639 n (File: SGN-E277014+) 1 GCACTAGAAG CTGATCAAGC TAGAGAGCGC CAGAGGATAG AAGAGCAAGA GAGGCTGGAG 61 AGGGAAGCTG CTGAAGCTGA AAGGAAAAGA AAGGAGGAAG AAGAGGCCCG GGAAAGAGCA 121 GCACATGAAG CTGCTGAAAG AGAAGCTGCA TTAGTAAAAA TACGCCAGGA GAAGCTATTG 181 TCATTGGGCC CTGAACCTGA GAAGGGTCCT GATGTTACCC AGGTTTTGGT ACGGTTTCCT 241 ACTGGAGAGC GCAAGGAGAG GAGATTTCAT TGTACTACAA CATTACAGTC GTTGTATGAC 301 TATGTCGATT CTCTAGGATG CCTAGCGGTT GAGAACTACA GTCTTGTATC CAACTTCCCT 361 CGCACTGTAT ATGGTTCAGA GAAGCTCAGT TTGTCCCTGA AAGATGCCGG ATTACATCCT 421 CAGGCCAGCC TTTTTATCGA ATTGAGCTAA ATGAGAACTT TAGAAGTCGG TATGGTTTAG 481 AAAATTTTCC TACTATAATG TTTGTAATTC GTCAGAGTAG TTTTAGCAAT TGAATTCAAT 541 AGAAAAAATT GTTTCCTATA CTGTTCTTTT GTTTCTGTGA CAACAAATAA ATAAGCGAAT 601 GGATTTTACT TGTGGTAGCA AATTTTAGTA CACATTTGT Predicted gene structure (within gDNA segment 89351 to 96122): Exon 1 90393 90410 ( 18 n); cDNA 1 18 ( 18 n); score: 0.889 Intron 1 90411 90508 ( 98 n); Pd: 1.000 (s: 0), Pa: 0.781 (s: 0.88) Exon 2 90509 90712 ( 204 n); cDNA 19 222 ( 204 n); score: 0.877 Intron 2 90713 90904 ( 192 n); Pd: 0.972 (s: 0.80), Pa: 1.000 (s: 0.90) Exon 3 90905 91153 ( 249 n); cDNA 223 471 ( 249 n); score: 0.825 Intron 3 91154 93950 (2797 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0) Exon 4 93951 93974 ( 24 n); cDNA 472 493 ( 22 n); score: 0.708 Intron 4 93975 94441 ( 467 n); Pd: 0.862 (s: 0), Pa: 0.676 (s: 0) Exon 5 94442 94452 ( 11 n); cDNA 494 504 ( 11 n); score: 0.727 Intron 5 94453 94994 ( 542 n); Pd: 0.000 (s: 0), Pa: 0.680 (s: 0) Exon 6 94995 95031 ( 37 n); cDNA 505 540 ( 36 n); score: 0.622 MATCH C08SLm0006K11.1+ SGN-E277014+ 0.849 543 0.850 C PGS_C08SLm0006K11.1+_SGN-E277014+ (90393 90410,90509 90712,90905 91153,93951 93974,94442 94452,94995 95031) Alignment (genomic DNA sequence = upper lines): GCACTAGAGG CTGATCAGGT ATGTAGTTTT AGGTTTTAAA ATAGGCTTTA GCAGTTCAAT 90452 |||||||| | ||||||| GCACTAGAAG CTGATCAA.. .......... .......... .......... .......... 18 TTTGAGAAAG GGTACAAAGT AATTTGTGTG CTGCTGAACT GTTCGTCCTA TACCAGGCTA 90512 |||| .......... .......... .......... .......... .......... ......GCTA 22 GAGAGCGTCA GAGGCAAGAA GAGCAAGAGC GGCAGGAAAG GGAAGCTGCT GAAGCTGAAA 90572 ||||||| || |||| |||| ||||||||| ||| ||| || |||||||||| |||||||||| GAGAGCGCCA GAGGATAGAA GAGCAAGAGA GGCTGGAGAG GGAAGCTGCT GAAGCTGAAA 82 GGAAAAGAAA GGAGGAAGAA GAGGCTCGTG AAAGAGCAGC TCGTGAAGCT GCTGAAAGAG 90632 |||||||||| |||||||||| ||||| || | |||||||||| | ||||||| |||||||||| GGAAAAGAAA GGAGGAAGAA GAGGCCCGGG AAAGAGCAGC ACATGAAGCT GCTGAAAGAG 142 AAGCTGCATT GGCTAAAATG CGCGAGGAGA AATTACAGTC ACTGGGCCCT GAACCTGCAA 90692 |||||||||| | ||||| ||| |||||| | || ||| | |||||||| ||||||| | AAGCTGCATT AGTAAAAATA CGCCAGGAGA AGCTATTGTC ATTGGGCCCT GAACCTGAGA 202 AGGGTCCCGA TGTTACTCAA GTAATCATCT TGTTCATGTC TCTTTTATTT AAACGTGCAT 90752 ||||||| || |||||| || AGGGTCCTGA TGTTACCCAG .......... .......... .......... .......... 222 CCGTCTATGT CATAATGCTA GATACAAGGT TGTTTCTATT GGTTTTGAGT AAGCAACGAG 90812 .......... .......... .......... .......... .......... .......... 222 AAAACTTGCG AGTCAAATAC ACATTAAAAA TGCAGTAGAA ATTGCTACTT TTCAGATGAT 90872 .......... .......... .......... .......... .......... .......... 222 TAAATTCTTT GTTGGTTTCT TGTATCCTGC AGGTTTTGGT AAGGTTTCCT ACTGGTGAGC 90932 |||||||| | |||||||| ||||| |||| .......... .......... .......... ..GTTTTGGT ACGGTTTCCT ACTGGAGAGC 250 GCAAAGAGAG AAGATTTCAA TGTAGTACAA CTATACAATC TCTGTATGAC TATGTTGATT 90992 |||| ||||| |||||||| |||| ||||| | |||| || |||||||| ||||| |||| GCAAGGAGAG GAGATTTCAT TGTACTACAA CATTACAGTC GTTGTATGAC TATGTCGATT 310 CTCTTGGATG CCTAGAGGTT GAAAAGTACA GTCTCGTGTC CAACTTCCCT CGTACAGTCT 91052 |||| ||||| ||||| |||| || || |||| |||| || || |||||||||| || || || | CTCTAGGATG CCTAGCGGTT GAGAACTACA GTCTTGTATC CAACTTCCCT CGCACTGTAT 370 ATGGCTCAGA GAAGCTCGCT CTGTCGTTGA AAGATGCTGG ATTACACCCT CAGGCCAGCC 91112 |||| ||||| ||||||| | |||| ||| ||||||| || |||||| ||| |||||||||| ATGGTTCAGA GAAGCTCAGT TTGTCCCTGA AAGATGCCGG ATTACATCCT CAGGCCAGCC 430 TTTTTGTTGA GTTGAACT-C ATGAGAACGA TTGCTGTCTT GTGCTAGAGT TGATAACTTT 91171 ||||| | || |||| || |||||||| | | ||| || TTTTTATCGA ATTGAGCTAA ATGAGAACTT TAGAAGTC-G GT........ .......... 471 TGTTGAAAAT GGTTGTATGT GAATTAGAAC TGGGCAATGA ATTCAATTAG ATGCAGTTTT 91231 .......... .......... .......... .......... .......... .......... 471 GTGTATTGTA CCCTTGTTAA ATAATTTTCT ACTGCTTTAA CGTTAAGTTT CTGTTAATAG 91291 .......... .......... .......... .......... .......... .......... 471 ATAATTGAAT ACATATATAG TTCAATTGTA ATTGGCTGTA AATGAATGAT CACTTGGTCT 91351 .......... .......... .......... .......... .......... .......... 471 AGCAGATTAT CGTTATATTC ACATGGAACT CCAGATTGCA AATGGATTCA GGTGCCAACT 91411 .......... .......... .......... .......... .......... .......... 471 TTTGATTGCA TTTATCATGA TTTATCAGTA GTGTGTCAAT TCTATAAAAA CTTGTCCACA 91471 .......... .......... .......... .......... .......... .......... 471 CCGAAATGTT AACACCAACC AATCACATAC GTCTGGTTTA TATAAACACC AAGAGTGGGT 91531 .......... .......... .......... .......... .......... .......... 471 AAGTATAGAT TTGTCTGTCT TGGAGTGAAA ATCACCGAGA AATGTTACTC ATATCTAACA 91591 .......... .......... .......... .......... .......... .......... 471 ATTAAGAATG AGAACAAGCC ATCCAACAAA TACATGTAAG TTATTGTTGA AAAGAATACC 91651 .......... .......... .......... .......... .......... .......... 471 AATTGAAATT GATTGATTAT ATATCAAAAC AAGCGCCCGA TTTGGCAAAA ATAACTTTGC 91711 .......... .......... .......... .......... .......... .......... 471 TGCTTGATGA TGCCTGAAAG TTAACAAAAT GTAGCAATGA GATTAGTCTA AGACGCAAGC 91771 .......... .......... .......... .......... .......... .......... 471 AGGCAAAGCT TGGAGTGGAA TTGATGATGC CTGAATGTTA ACAAAATGTA GCAATGAGAT 91831 .......... .......... .......... .......... .......... .......... 471 TAGTCTAAGA CACAAGCAGG CAAAGCTTGG AGAAAGAAAA AAGTACAAAA ATGGCTTCGC 91891 .......... .......... .......... .......... .......... .......... 471 CCGGAGACCT TCAGTGTGTT AGACTGACGT GATAACCAAC TACACCACGA AACCCTGTTA 91951 .......... .......... .......... .......... .......... .......... 471 TTCAAAAGTA CCAATTTGTT TATAAACATA TAAGTTTTAG ACACTAATTA CGTTTAACAT 92011 .......... .......... .......... .......... .......... .......... 471 TGTAATACGT GGCTAATTAG ATGTTAAATC AACGGCGATT AGCAAGTTGA TTATTTGAAG 92071 .......... .......... .......... .......... .......... .......... 471 TTGACAAATT ATTAACCCTT TAACTCAAAA ACTGCCATTT TTCCAGCTGC TTCTCTCTTC 92131 .......... .......... .......... .......... .......... .......... 471 TCCATTCCCC TAAATTCTCT ATTAACAAAC TATGATTTTT TAGGGATTTT GAGATTTGTT 92191 .......... .......... .......... .......... .......... .......... 471 TGCCCTAATT AGCTATATGC GTTTCAATAC TGTGTCCGAT TGTTAATCAG TTGAATTCTT 92251 .......... .......... .......... .......... .......... .......... 471 CAAATGGGGG TTCTCAATTT TTCCGGTTTA ATTTTGCTGA AAGCTGAGCT TTTTCAATTC 92311 .......... .......... .......... .......... .......... .......... 471 CAATTCCGAT TTGGAAGAGT TATTGATTCC TATTCTGTCG CCTGTGAAGC ATTTTCTGAA 92371 .......... .......... .......... .......... .......... .......... 471 CCTTTTCTTT GATTTCATTA ATTTTCTTCT TCTCTAGGTT TACTTCTTTT TTTGTGTTAT 92431 .......... .......... .......... .......... .......... .......... 471 TTTTTTTTGT TTCTGGGTGT GGAGAGATGA ATTCTGCCTG TTCTTGGTTT GAAAAAGTGA 92491 .......... .......... .......... .......... .......... .......... 471 AATTAGATGA ACCTGAAATT GTTGAAGTGT CACCAGACGA GAGATATATT CGGGTAATTT 92551 .......... .......... .......... .......... .......... .......... 471 CTGTGTTTTT TTTCTCTTCT CTATGTATAC TTGCCAAGTT TCTATTTTTA GGATTATCTG 92611 .......... .......... .......... .......... .......... .......... 471 ATAACACAAC TGTAGGTCCC GCTTGTTGTA CTATTGTTCA TTTCATTTTA TAAGTTAATG 92671 .......... .......... .......... .......... .......... .......... 471 CTAGAAAATT GTGGTAGTTG TATCATTTGA TTTGAAAGTG AGTCTTGTTA AAAAGGGCTT 92731 .......... .......... .......... .......... .......... .......... 471 ATCCCATACA AAGGGTGAGC GCATTGCATT CAAGGGAGTG GTGTAGTCGT CAATGAAGTG 92791 .......... .......... .......... .......... .......... .......... 471 GTTGAGAGTC ATGAGATTTC AGGAGTTCCC TGTGGGGCTA TTACACGTAT TCCCCCTGGG 92851 .......... .......... .......... .......... .......... .......... 471 GTAGCTACAA GCATAAACCA GTTTAATAAA TAACGTAGAG TGATCACATG AATTATTTGC 92911 .......... .......... .......... .......... .......... .......... 471 AAGCTTGCTT GCGCACACGT GAGGAAGTTG AATCTCTCTA AGAATGGAGA ACCCCATATG 92971 .......... .......... .......... .......... .......... .......... 471 TGATATTGCT ATAAAGCACT GTAAGGTTTA TTAATCAACA AAGCAAAAAT AAAATTCTTA 93031 .......... .......... .......... .......... .......... .......... 471 AAAGATGAGA TAAATTCAGA AGCACTTGTT AGATAAAATA ACTAGGTGAT TCTTCCATTT 93091 .......... .......... .......... .......... .......... .......... 471 GTCTAAGCCT TGGTGGACAG TCACGAATGG TCATTAAAAA AAACACGAAG GGTGAGTGTA 93151 .......... .......... .......... .......... .......... .......... 471 TTGCTATTGT TATTCCTTAT GCTTGCCTTT CTGCAAAGGG TTCTTCAAGC ACCTATGAAG 93211 .......... .......... .......... .......... .......... .......... 471 AGAGTTGAGA GGTTCATGAA GTGTTTACTT TAGGTCAGAA AAAGCTTCAA AATCTTTATA 93271 .......... .......... .......... .......... .......... .......... 471 AAAGGAAGAA AGATCGTCAA CGATGTTATA AACTCAAAAT TTAATTTTGA GACATGATTG 93331 .......... .......... .......... .......... .......... .......... 471 TGATTGGTTA TCATATGATA TTAATTTTGT TTCTGTTTCA TTTGTGTAAT TTTGTGGGTT 93391 .......... .......... .......... .......... .......... .......... 471 TTGGTGGTAT TGTCACCTTC TTTTTGTTTC TCTTCCTCCA GTATAGTGAA ATCTTGGGAA 93451 .......... .......... .......... .......... .......... .......... 471 GTGGAGCATT TAAGACTGTG TATGGCTCCG ACACCCATCT CCTTTTATTT TTTGCGTTTG 93511 .......... .......... .......... .......... .......... .......... 471 AAGTCTTACC TCATCATCAT TATTCATTTT CAAGTTTTTA GCGATTTTCA AATCTTTTCA 93571 .......... .......... .......... .......... .......... .......... 471 TATGTAGCTA TAAGGCATTT GACAATATTG ATGGAATAGA AGTTGCCTGG AATCAAATTT 93631 .......... .......... .......... .......... .......... .......... 471 GCATAGATGA TGCTTTGCAG TCGCCTGAAC ATTTGGAGAG AACATATTCC GAGGTTCACT 93691 .......... .......... .......... .......... .......... .......... 471 TGTTGAAAAT GTTGAAGAAT GAGAACGTTA TAAAATTATA TACTTCATGG GTGGACGATG 93751 .......... .......... .......... .......... .......... .......... 471 TGAACAAAAG TATTAATATG ATCACCGAAT TATTTAGTTC AGGAAGCTTA AGGCAGTGAG 93811 .......... .......... .......... .......... .......... .......... 471 TACTATATTT CTTTCATATT TGCCCTTCTT ATTTATCTTT CATGCAACCT CCAGATCTTC 93871 .......... .......... .......... .......... .......... .......... 471 TTTTTCTTAC ATCTTTTGCA TTCTCTCCCT CTTAGCTATC GGACAAAGCA TAAGACGGTT 93931 .......... .......... .......... .......... .......... .......... 471 GACACTAAAG CCATTAAACA TTGGGCTAGA CAAATTCTCC AAGGTTTACA TTATCTCCAT 93991 | ||| |||| ||||| ||| | .......... .........A -TGGTTTAGA -AAATTTTCC TAC....... .......... 493 AGTCACAATC CACCGGTTAT ACATAGAGAC TTGAAATGTG ACAATATATT CATCAATGGA 94051 .......... .......... .......... .......... .......... .......... 493 AACCATGGAG AAGTTAAACT TGGAGATCTT GGATTGGCGA CAATTATGGA GCAACCTACT 94111 .......... .......... .......... .......... .......... .......... 493 GTTCGAAGTG TTATTGGTAG TTATTTGACT TAGACTTACT GTTTTGTCTC CATCAAAACT 94171 .......... .......... .......... .......... .......... .......... 493 AATTGTTAAC CCCTCTTGCC ATTCTTTGTG TTTTCTCTTT ATCAGGTACC CCTGAATTTA 94231 .......... .......... .......... .......... .......... .......... 493 TGGCGCCTGA GCTATATGAT GAAGAATATA ATGAACTTGT TGACATTTAT TCTTTTGGCA 94291 .......... .......... .......... .......... .......... .......... 493 TGTGCATCTT GGAGCTAATA ACATGTGAAT ATCCATATAA TGAGTGTAGA AATCAAGCAC 94351 .......... .......... .......... .......... .......... .......... 493 AAATTTATAA GAAAGTCACG TCGGTGAGTT TTAGTTGTTT TGGGCTTTTA CTGTTACTTT 94411 .......... .......... .......... .......... .......... .......... 493 ATTCTACTTG AAAATAATTG CAATGCTAAG GAAAATATTT GATTTCAGGG AATAAAGCCA 94471 | ||| ||| | .......... .......... .......... TATAATGTTT G......... .......... 504 GCGTCTTTAG CAAAAGTAGC AGATCCTCAT GTAAAACAAT TTGTCGAGAA ATGTTTGGCC 94531 .......... .......... .......... .......... .......... .......... 504 CCAGTATCAG TAAGATTGAG TGCAGCTGAA CTTTTGGAAG ACCCGTTTCT TTCATCTGAG 94591 .......... .......... .......... .......... .......... .......... 504 AGCTTGAAAA CCCCCGCATG TGATCATTTG CAGCCCACAA ATTTTGTGCC TGAAGCACAA 94651 .......... .......... .......... .......... .......... .......... 504 AGCTTGCCAA AGTCGATTTT CATGGATGTA GACCTTGCAC AAAAGATGCA CAGTGGCATG 94711 .......... .......... .......... .......... .......... .......... 504 TCCATAGAAA GCAAGACTGC ATCTCCTCAT TTTTCTAATC TAGAAATCGT GAGACGAAAT 94771 .......... .......... .......... .......... .......... .......... 504 GGGAGAAACG AATTTAGGTT ACAAGGTGAC AAGCATGATG ATCGTTCAAT TGTGTTTTCA 94831 .......... .......... .......... .......... .......... .......... 504 CTGCGAATAG CTGAATTGGC TGGTATTTGA TCATTCTTAC AGAATAATAC ATGGAGTATT 94891 .......... .......... .......... .......... .......... .......... 504 TGCAAGCAAA TGTTTGACTC TTTTCTCTAT TTTTAACAGG TCGGATCAGG CATGTGCACT 94951 .......... .......... .......... .......... .......... .......... 504 TTGTATATTG TATTGATGCT GACACTGTGA TGTCAATAGC TAGTGAGATG GCAGAGGAGC 95011 | | | ||||| || .......... .......... .......... .......... ...TAATTCG TCAGAGTAGT 521 TTGAGTTGTT GAATGACGAT 95031 || || || |||| | || TTTAGCAATT GAAT-TCAAT 540 hqPGS_C08SLm0006K11.1+_SGN-E277014+ (90393 90410,90509 90712,90905 91153,93951 93974) ******************************************************************************** EST sequence 51 +strand 448 n (File: SGN-E355297+) 1 TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 61 TACTCAAGTT TTGGTAAGGT TTCCTACTGG TGAGCGCAAA GAGAGAAGAT TTCAATGTAG 121 TACAACTATA CAATCTCTGT ATGACTATGT TGATTCTCTT GGATGCCTAG AGGTTGAAAA 181 GTACAGTCTC GTGTCCAACT TCCCTCGTAC AGTCTATGGC TCAGAGAAGC TCGCTCTGTC 241 GTTGAAAGAT GCTGGATTAC ACCCTCAGGC CAGCCTTTTT GTTGAGTTGA ACTCATGAGA 301 ACGATTGCTG TCTTGTGCTA GAGTTGATAA CTTTTGTTGA AAATGGTTGT ATGTGAATTA 361 GAACTGGGCA ATGAATTCAA TTAGATGCAG TTTTGTGTAT TGTACCCTTG TTAAATAATT 421 TTCTACTGCT TTAACGTTAA AAAAAAAA Predicted gene structure (within gDNA segment 90046 to 91967): Exon 1 90646 90712 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 90713 90904 ( 192 n); Pd: 0.972 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 90905 91277 ( 373 n); cDNA 68 440 ( 373 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E355297+ 1.000 440 0.982 C PGS_C08SLm0006K11.1+_SGN-E355297+ (90646 90712,90905 91277) Alignment (genomic DNA sequence = upper lines): TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 90705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 60 TACTCAAGTA ATCATCTTGT TCATGTCTCT TTTATTTAAA CGTGCATCCG TCTATGTCAT 90765 ||||||| TACTCAA... .......... .......... .......... .......... .......... 67 AATGCTAGAT ACAAGGTTGT TTCTATTGGT TTTGAGTAAG CAACGAGAAA ACTTGCGAGT 90825 .......... .......... .......... .......... .......... .......... 67 CAAATACACA TTAAAAATGC AGTAGAAATT GCTACTTTTC AGATGATTAA ATTCTTTGTT 90885 .......... .......... .......... .......... .......... .......... 67 GGTTTCTTGT ATCCTGCAGG TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 90945 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 108 ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 91005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 168 AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 91065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 228 GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 91125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 288 GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 91185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 348 GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 91245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 408 TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 91277 |||||||||| |||||||||| |||||||||| || TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 440 hqPGS_C08SLm0006K11.1+_SGN-E355297+ (90646 90712,90905 91277) ******************************************************************************** EST sequence 62 +strand 448 n (File: SGN-E356750+) 1 TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 61 TACTCAAGTT TTGGTAAGGT TTCCTACTGG TGAGCGCAAA GAGAGAAGAT TTCAATGTAG 121 TACAACTATA CAATCTCTGT ATGACTATGT TGATTCTCTT GGATGCCTAG AGGTTGAAAA 181 GTACAGTCTC GTGTCCAACT TCCCTCGTAC AGTCTATGGC TCAGAGAAGC TCGCTCTGTC 241 GTTGAAAGAT GCTGGATTAC ACCCTCAGGC CAGCCTTTTT GTTGAGTTGA ACTCATGAGA 301 ACGATTGCTG TCTTGTGCTA GAGTTGATAA CTTTTGTTGA AAATGGTTGT ATGTGAATTA 361 GAACTGGGCA ATGAATTCAA TTAGATGCAG TTTTGTGTAT TGTACCCTTG TTAAATAATT 421 TTCTACTGCT TTAACGTTAA AAAAAAAA Predicted gene structure (within gDNA segment 90046 to 91967): Exon 1 90646 90712 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 90713 90904 ( 192 n); Pd: 0.972 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 90905 91277 ( 373 n); cDNA 68 440 ( 373 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E356750+ 1.000 440 0.982 C PGS_C08SLm0006K11.1+_SGN-E356750+ (90646 90712,90905 91277) Alignment (genomic DNA sequence = upper lines): TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 90705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 60 TACTCAAGTA ATCATCTTGT TCATGTCTCT TTTATTTAAA CGTGCATCCG TCTATGTCAT 90765 ||||||| TACTCAA... .......... .......... .......... .......... .......... 67 AATGCTAGAT ACAAGGTTGT TTCTATTGGT TTTGAGTAAG CAACGAGAAA ACTTGCGAGT 90825 .......... .......... .......... .......... .......... .......... 67 CAAATACACA TTAAAAATGC AGTAGAAATT GCTACTTTTC AGATGATTAA ATTCTTTGTT 90885 .......... .......... .......... .......... .......... .......... 67 GGTTTCTTGT ATCCTGCAGG TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 90945 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 108 ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 91005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 168 AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 91065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 228 GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 91125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 288 GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 91185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 348 GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 91245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 408 TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 91277 |||||||||| |||||||||| |||||||||| || TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 440 hqPGS_C08SLm0006K11.1+_SGN-E356750+ (90646 90712,90905 91277) ******************************************************************************** EST sequence 83 +strand 448 n (File: SGN-E349777+) 1 TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 61 TACTCAAGTT TTGGTAAGGT TTCCTACTGG TGAGCGCAAA GAGAGAAGAT TTCAATGTAG 121 TACAACTATA CAATCTCTGT ATGACTATGT TGATTCTCTT GGATGCCTAG AGGTTGAAAA 181 GTACAGTCTC GTGTCCAACT TCCCTCGTAC AGTCTATGGC TCAGAGAAGC TCGCTCTGTC 241 GTTGAAAGAT GCTGGATTAC ACCCTCAGGC CAGCCTTTTT GTTGAGTTGA ACTCATGAGA 301 ACGATTGCTG TCTTGTGCTA GAGTTGATAA CTTTTGTTGA AAATGGTTGT ATGTGAATTA 361 GAACTGGGCA ATGAATTCAA TTAGATGCAG TTTTGTGTAT TGTACCCTTG TTAAATAATT 421 TTCTACTGCT TTAACGTTAA AAAAAAAA Predicted gene structure (within gDNA segment 90046 to 91967): Exon 1 90646 90712 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 90713 90904 ( 192 n); Pd: 0.972 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 90905 91277 ( 373 n); cDNA 68 440 ( 373 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E349777+ 1.000 440 0.982 C PGS_C08SLm0006K11.1+_SGN-E349777+ (90646 90712,90905 91277) Alignment (genomic DNA sequence = upper lines): TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 90705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATGCGC GAGGAGAAAT TACAGTCACT GGGCCCTGAA CCTGCAAAGG GTCCCGATGT 60 TACTCAAGTA ATCATCTTGT TCATGTCTCT TTTATTTAAA CGTGCATCCG TCTATGTCAT 90765 ||||||| TACTCAA... .......... .......... .......... .......... .......... 67 AATGCTAGAT ACAAGGTTGT TTCTATTGGT TTTGAGTAAG CAACGAGAAA ACTTGCGAGT 90825 .......... .......... .......... .......... .......... .......... 67 CAAATACACA TTAAAAATGC AGTAGAAATT GCTACTTTTC AGATGATTAA ATTCTTTGTT 90885 .......... .......... .......... .......... .......... .......... 67 GGTTTCTTGT ATCCTGCAGG TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 90945 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TTTTGGTAAG GTTTCCTACT GGTGAGCGCA AAGAGAGAAG 108 ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 91005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAATGT AGTACAACTA TACAATCTCT GTATGACTAT GTTGATTCTC TTGGATGCCT 168 AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 91065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTTGAA AAGTACAGTC TCGTGTCCAA CTTCCCTCGT ACAGTCTATG GCTCAGAGAA 228 GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 91125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGCTCTG TCGTTGAAAG ATGCTGGATT ACACCCTCAG GCCAGCCTTT TTGTTGAGTT 288 GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 91185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCATGA GAACGATTGC TGTCTTGTGC TAGAGTTGAT AACTTTTGTT GAAAATGGTT 348 GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 91245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTGAAT TAGAACTGGG CAATGAATTC AATTAGATGC AGTTTTGTGT ATTGTACCCT 408 TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 91277 |||||||||| |||||||||| |||||||||| || TGTTAAATAA TTTTCTACTG CTTTAACGTT AA 440 hqPGS_C08SLm0006K11.1+_SGN-E349777+ (90646 90712,90905 91277) ******************************************************************************** EST sequence 71 +strand 383 n (File: SGN-E329801+) 1 AAATTCTCTA TTAACAAACT ATGATTTTTT AGGGATTTTG AGATTTGTTT GCCCTAATTA 61 GCTATATGCG TTTCAATACT GTGTCCGATT GTTAATCAGT TGAATTCTTC AAATGGGGGT 121 TCTCAATTTT TCCGGTTTAA TTTTGCTGAA AGCTGAGCTT TTTCAATTCC AATTCCGATT 181 TGGAAGAGTT ATTGATTCCT ATTCTGTCGC CTGTGAAGCA TTTTCTGAAC CTTTTCTTTG 241 ATTTCATTAA TTTTCTTCTT CTCTAGGTTT ACTTCTTTTT TTGTGTTATT TTTTTTTGTT 301 TCTGGGTGTG GAGAGATGAA TTCTGCCTGT TCTTGGTTTG AAAAAGTGAA ATTAGATGAA 361 CCTGAAATTG TTGAAGTGTC ACC Predicted gene structure (within gDNA segment 91543 to 93135): Exon 1 92143 92525 ( 383 n); cDNA 1 383 ( 383 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E329801+ 1.000 383 1.000 C PGS_C08SLm0006K11.1+_SGN-E329801+ (92143 92525) Alignment (genomic DNA sequence = upper lines): AAATTCTCTA TTAACAAACT ATGATTTTTT AGGGATTTTG AGATTTGTTT GCCCTAATTA 92202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCTCTA TTAACAAACT ATGATTTTTT AGGGATTTTG AGATTTGTTT GCCCTAATTA 60 GCTATATGCG TTTCAATACT GTGTCCGATT GTTAATCAGT TGAATTCTTC AAATGGGGGT 92262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATATGCG TTTCAATACT GTGTCCGATT GTTAATCAGT TGAATTCTTC AAATGGGGGT 120 TCTCAATTTT TCCGGTTTAA TTTTGCTGAA AGCTGAGCTT TTTCAATTCC AATTCCGATT 92322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAATTTT TCCGGTTTAA TTTTGCTGAA AGCTGAGCTT TTTCAATTCC AATTCCGATT 180 TGGAAGAGTT ATTGATTCCT ATTCTGTCGC CTGTGAAGCA TTTTCTGAAC CTTTTCTTTG 92382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGAGTT ATTGATTCCT ATTCTGTCGC CTGTGAAGCA TTTTCTGAAC CTTTTCTTTG 240 ATTTCATTAA TTTTCTTCTT CTCTAGGTTT ACTTCTTTTT TTGTGTTATT TTTTTTTGTT 92442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCATTAA TTTTCTTCTT CTCTAGGTTT ACTTCTTTTT TTGTGTTATT TTTTTTTGTT 300 TCTGGGTGTG GAGAGATGAA TTCTGCCTGT TCTTGGTTTG AAAAAGTGAA ATTAGATGAA 92502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGGTGTG GAGAGATGAA TTCTGCCTGT TCTTGGTTTG AAAAAGTGAA ATTAGATGAA 360 CCTGAAATTG TTGAAGTGTC ACC 92525 |||||||||| |||||||||| ||| CCTGAAATTG TTGAAGTGTC ACC 383 hqPGS_C08SLm0006K11.1+_SGN-E329801+ (92143 92525) ******************************************************************************** EST sequence 88 -strand 388 n (File: SGN-E578224-) 1 GTTTTTATTC TTTCTTTCCT ATAATTCAAT TTTTATTTCT ATTTAGAGAG ATAAAATTTT 61 TGTCATGATT CATGAACTAA TGTACTCTCT AATTTTTTTC GTAATTGAAA ATTCGAGGTT 121 GAAATGTATA TGTGATATTG CTATAAAGCA CATTTTTTTA TTTAATGATA AGGTTATTAA 181 TCAACAAAGA AAAATTAAAA TTCTTAAAAG ATGAGATAAA TTCAGAAGCA CTTATTTATT 241 AGTTTTAAAT ATAGCAGACA GAATTCCATT GGTCTAATTT GGGACCTTAG AATAGATTTT 301 GACTCTATCT GACAAACATA TCAAGATAAA GAATAGGAAA GGGCCCTTAG ATTTAGTTGT 361 GACCTCTGAG GAGCCGTATG AGGTGAAA Predicted gene structure (within gDNA segment 90059 to 95208): Exon 1 91008 91022 ( 15 n); cDNA 116 130 ( 15 n); score: 0.867 Intron 1 91023 92634 (1612 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.61) Exon 2 92635 92675 ( 41 n); cDNA 131 171 ( 41 n); score: 0.610 Intron 2 92676 92996 ( 321 n); Pd: 0.000 (s: 0.61), Pa: 0.000 (s: 0.94) Exon 3 92997 93058 ( 62 n); cDNA 172 233 ( 62 n); score: 0.952 Intron 3 93059 94191 (1133 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 4 94192 94216 ( 25 n); cDNA 234 257 ( 24 n); score: 0.640 MATCH C08SLm0006K11.1+ SGN-E578224- 0.952 143 0.369 C PGS_C08SLm0006K11.1+_SGN-E578224- (91008 91022,92635 92675,92997 93058,94192 94216) Alignment (genomic DNA sequence = upper lines): AGGTTGAAAA GTACAGTCTC GTGTCCAACT TCCCTCGTAC AGTCTATGGC TCAGAGAAGC 91067 ||||||||| ||| | AGGTTGAAAT GTATA..... .......... .......... .......... .......... 130 TCGCTCTGTC GTTGAAAGAT GCTGGATTAC ACCCTCAGGC CAGCCTTTTT GTTGAGTTGA 91127 .......... .......... .......... .......... .......... .......... 130 ACTCATGAGA ACGATTGCTG TCTTGTGCTA GAGTTGATAA CTTTTGTTGA AAATGGTTGT 91187 .......... .......... .......... .......... .......... .......... 130 ATGTGAATTA GAACTGGGCA ATGAATTCAA TTAGATGCAG TTTTGTGTAT TGTACCCTTG 91247 .......... .......... .......... .......... .......... .......... 130 TTAAATAATT TTCTACTGCT TTAACGTTAA GTTTCTGTTA ATAGATAATT GAATACATAT 91307 .......... .......... .......... .......... .......... .......... 130 ATAGTTCAAT TGTAATTGGC TGTAAATGAA TGATCACTTG GTCTAGCAGA TTATCGTTAT 91367 .......... .......... .......... .......... .......... .......... 130 ATTCACATGG AACTCCAGAT TGCAAATGGA TTCAGGTGCC AACTTTTGAT TGCATTTATC 91427 .......... .......... .......... .......... .......... .......... 130 ATGATTTATC AGTAGTGTGT CAATTCTATA AAAACTTGTC CACACCGAAA TGTTAACACC 91487 .......... .......... .......... .......... .......... .......... 130 AACCAATCAC ATACGTCTGG TTTATATAAA CACCAAGAGT GGGTAAGTAT AGATTTGTCT 91547 .......... .......... .......... .......... .......... .......... 130 GTCTTGGAGT GAAAATCACC GAGAAATGTT ACTCATATCT AACAATTAAG AATGAGAACA 91607 .......... .......... .......... .......... .......... .......... 130 AGCCATCCAA CAAATACATG TAAGTTATTG TTGAAAAGAA TACCAATTGA AATTGATTGA 91667 .......... .......... .......... .......... .......... .......... 130 TTATATATCA AAACAAGCGC CCGATTTGGC AAAAATAACT TTGCTGCTTG ATGATGCCTG 91727 .......... .......... .......... .......... .......... .......... 130 AAAGTTAACA AAATGTAGCA ATGAGATTAG TCTAAGACGC AAGCAGGCAA AGCTTGGAGT 91787 .......... .......... .......... .......... .......... .......... 130 GGAATTGATG ATGCCTGAAT GTTAACAAAA TGTAGCAATG AGATTAGTCT AAGACACAAG 91847 .......... .......... .......... .......... .......... .......... 130 CAGGCAAAGC TTGGAGAAAG AAAAAAGTAC AAAAATGGCT TCGCCCGGAG ACCTTCAGTG 91907 .......... .......... .......... .......... .......... .......... 130 TGTTAGACTG ACGTGATAAC CAACTACACC ACGAAACCCT GTTATTCAAA AGTACCAATT 91967 .......... .......... .......... .......... .......... .......... 130 TGTTTATAAA CATATAAGTT TTAGACACTA ATTACGTTTA ACATTGTAAT ACGTGGCTAA 92027 .......... .......... .......... .......... .......... .......... 130 TTAGATGTTA AATCAACGGC GATTAGCAAG TTGATTATTT GAAGTTGACA AATTATTAAC 92087 .......... .......... .......... .......... .......... .......... 130 CCTTTAACTC AAAAACTGCC ATTTTTCCAG CTGCTTCTCT CTTCTCCATT CCCCTAAATT 92147 .......... .......... .......... .......... .......... .......... 130 CTCTATTAAC AAACTATGAT TTTTTAGGGA TTTTGAGATT TGTTTGCCCT AATTAGCTAT 92207 .......... .......... .......... .......... .......... .......... 130 ATGCGTTTCA ATACTGTGTC CGATTGTTAA TCAGTTGAAT TCTTCAAATG GGGGTTCTCA 92267 .......... .......... .......... .......... .......... .......... 130 ATTTTTCCGG TTTAATTTTG CTGAAAGCTG AGCTTTTTCA ATTCCAATTC CGATTTGGAA 92327 .......... .......... .......... .......... .......... .......... 130 GAGTTATTGA TTCCTATTCT GTCGCCTGTG AAGCATTTTC TGAACCTTTT CTTTGATTTC 92387 .......... .......... .......... .......... .......... .......... 130 ATTAATTTTC TTCTTCTCTA GGTTTACTTC TTTTTTTGTG TTATTTTTTT TTGTTTCTGG 92447 .......... .......... .......... .......... .......... .......... 130 GTGTGGAGAG ATGAATTCTG CCTGTTCTTG GTTTGAAAAA GTGAAATTAG ATGAACCTGA 92507 .......... .......... .......... .......... .......... .......... 130 AATTGTTGAA GTGTCACCAG ACGAGAGATA TATTCGGGTA ATTTCTGTGT TTTTTTTCTC 92567 .......... .......... .......... .......... .......... .......... 130 TTCTCTATGT ATACTTGCCA AGTTTCTATT TTTAGGATTA TCTGATAACA CAACTGTAGG 92627 .......... .......... .......... .......... .......... .......... 130 TCCCGCTTGT TGTACTATTG TTCATTTCAT TTTATAAGTT AATGCTAGAA AATTGTGGTA 92687 ||| || | | | | ||| ||| | | || |||| || .......TGT GATATTGCTA TAAAGCACAT TTTTTTATTT AATGATAA.. .......... 171 GTTGTATCAT TTGATTTGAA AGTGAGTCTT GTTAAAAAGG GCTTATCCCA TACAAAGGGT 92747 .......... .......... .......... .......... .......... .......... 171 GAGCGCATTG CATTCAAGGG AGTGGTGTAG TCGTCAATGA AGTGGTTGAG AGTCATGAGA 92807 .......... .......... .......... .......... .......... .......... 171 TTTCAGGAGT TCCCTGTGGG GCTATTACAC GTATTCCCCC TGGGGTAGCT ACAAGCATAA 92867 .......... .......... .......... .......... .......... .......... 171 ACCAGTTTAA TAAATAACGT AGAGTGATCA CATGAATTAT TTGCAAGCTT GCTTGCGCAC 92927 .......... .......... .......... .......... .......... .......... 171 ACGTGAGGAA GTTGAATCTC TCTAAGAATG GAGAACCCCA TATGTGATAT TGCTATAAAG 92987 .......... .......... .......... .......... .......... .......... 171 CACTGTAAGG TTTATTAATC AACAAAGCAA AAATAAAATT CTTAAAAGAT GAGATAAATT 93047 | ||||||||| ||||||| || || ||||||| |||||||||| |||||||||| .........G GTTATTAATC AACAAAGAAA AATTAAAATT CTTAAAAGAT GAGATAAATT 222 CAGAAGCACT TGTTAGATAA AATAACTAGG TGATTCTTCC ATTTGTCTAA GCCTTGGTGG 93107 |||||||||| | CAGAAGCACT T......... .......... .......... .......... .......... 233 ACAGTCACGA ATGGTCATTA AAAAAAACAC GAAGGGTGAG TGTATTGCTA TTGTTATTCC 93167 .......... .......... .......... .......... .......... .......... 233 TTATGCTTGC CTTTCTGCAA AGGGTTCTTC AAGCACCTAT GAAGAGAGTT GAGAGGTTCA 93227 .......... .......... .......... .......... .......... .......... 233 TGAAGTGTTT ACTTTAGGTC AGAAAAAGCT TCAAAATCTT TATAAAAGGA AGAAAGATCG 93287 .......... .......... .......... .......... .......... .......... 233 TCAACGATGT TATAAACTCA AAATTTAATT TTGAGACATG ATTGTGATTG GTTATCATAT 93347 .......... .......... .......... .......... .......... .......... 233 GATATTAATT TTGTTTCTGT TTCATTTGTG TAATTTTGTG GGTTTTGGTG GTATTGTCAC 93407 .......... .......... .......... .......... .......... .......... 233 CTTCTTTTTG TTTCTCTTCC TCCAGTATAG TGAAATCTTG GGAAGTGGAG CATTTAAGAC 93467 .......... .......... .......... .......... .......... .......... 233 TGTGTATGGC TCCGACACCC ATCTCCTTTT ATTTTTTGCG TTTGAAGTCT TACCTCATCA 93527 .......... .......... .......... .......... .......... .......... 233 TCATTATTCA TTTTCAAGTT TTTAGCGATT TTCAAATCTT TTCATATGTA GCTATAAGGC 93587 .......... .......... .......... .......... .......... .......... 233 ATTTGACAAT ATTGATGGAA TAGAAGTTGC CTGGAATCAA ATTTGCATAG ATGATGCTTT 93647 .......... .......... .......... .......... .......... .......... 233 GCAGTCGCCT GAACATTTGG AGAGAACATA TTCCGAGGTT CACTTGTTGA AAATGTTGAA 93707 .......... .......... .......... .......... .......... .......... 233 GAATGAGAAC GTTATAAAAT TATATACTTC ATGGGTGGAC GATGTGAACA AAAGTATTAA 93767 .......... .......... .......... .......... .......... .......... 233 TATGATCACC GAATTATTTA GTTCAGGAAG CTTAAGGCAG TGAGTACTAT ATTTCTTTCA 93827 .......... .......... .......... .......... .......... .......... 233 TATTTGCCCT TCTTATTTAT CTTTCATGCA ACCTCCAGAT CTTCTTTTTC TTACATCTTT 93887 .......... .......... .......... .......... .......... .......... 233 TGCATTCTCT CCCTCTTAGC TATCGGACAA AGCATAAGAC GGTTGACACT AAAGCCATTA 93947 .......... .......... .......... .......... .......... .......... 233 AACATTGGGC TAGACAAATT CTCCAAGGTT TACATTATCT CCATAGTCAC AATCCACCGG 94007 .......... .......... .......... .......... .......... .......... 233 TTATACATAG AGACTTGAAA TGTGACAATA TATTCATCAA TGGAAACCAT GGAGAAGTTA 94067 .......... .......... .......... .......... .......... .......... 233 AACTTGGAGA TCTTGGATTG GCGACAATTA TGGAGCAACC TACTGTTCGA AGTGTTATTG 94127 .......... .......... .......... .......... .......... .......... 233 GTAGTTATTT GACTTAGACT TACTGTTTTG TCTCCATCAA AACTAATTGT TAACCCCTCT 94187 .......... .......... .......... .......... .......... .......... 233 TGCCATTCTT TGTGTTTTCT CTTTATCAG 94216 ||| | | ||||| | || ||| ....ATT-TA TTAGTTTTAA ATATAGCAG 257 hqPGS_C08SLm0006K11.1+_SGN-E578224- (92997 93058) ******************************************************************************** EST sequence 5 +strand 679 n (File: SGN-E551384+) 1 CAAATTTATA AGAAAGTCAC GTCGGGAATA AAGCCAGCGT CTTTAGCAAA AGTAGCAGAT 61 CCTCATGTAA AACAATTTGT CGAGAAATGT TTGGCCCCAG TATCAGTAAG ATTGAGTGCA 121 GCTGAACTTT TGGAAGACCC GTTTCTTTCA TCTGAGAGCT TGAAAACCCC CGCATGTGAT 181 CATTTGCAGC CCACAAATTT TGTGCCTGAA GCACAAAGCT TGCCAAAGTC GATTTTCATG 241 GATGTAGACC TTGCACAAAA GATGCACAGT GGCATGTCCA TAGAAAGCAA GACTGCATCT 301 CCTCATTTTT CTAATCTAGA AATCGTGAGA CGAAATGGGA GAAACGAATT TAGGTTACAA 361 GGTGACAAGC ATGATGATCG TTCAATTGTG TTTTCACTGC GAATAGCTGA ATTGGCTGGT 421 CGGATCAGGC ATGTGCACTT TGTATATTGT ATTGATGCTG ACACTGTGAT GTCAATAGCT 481 AGTGAGATGG CAGAGGAGCT TGAGTTGTTG AATGACGATG TGGCAACAAT AGCTGAATTG 541 ATTACCGACT TCATTTTCAA ACTCTCAACA ATCCAGAAAT ATTCTTTTGG GAGTTTGTCT 601 GCAGTGAATA ACTTATCCGA TGAATTCACT TTGATAATCG AAGATCCTAT TGTCTGTGAA 661 GGCATTACAT CTTTGAATC Predicted gene structure (within gDNA segment 93629 to 95801): Exon 1 94351 94374 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 94375 94459 ( 85 n); Pd: 0.077 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 94460 94853 ( 394 n); cDNA 25 418 ( 394 n); score: 1.000 Intron 2 94854 94930 ( 77 n); Pd: 0.919 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 94931 95191 ( 261 n); cDNA 419 679 ( 261 n); score: 0.989 MATCH C08SLm0006K11.1+ SGN-E551384+ 0.995 679 1.000 C PGS_C08SLm0006K11.1+_SGN-E551384+ (94351 94374,94460 94853,94931 95191) Alignment (genomic DNA sequence = upper lines): CAAATTTATA AGAAAGTCAC GTCGGTGAGT TTTAGTTGTT TTGGGCTTTT ACTGTTACTT 94410 |||||||||| |||||||||| |||| CAAATTTATA AGAAAGTCAC GTCG...... .......... .......... .......... 24 TATTCTACTT GAAAATAATT GCAATGCTAA GGAAAATATT TGATTTCAGG GAATAAAGCC 94470 | |||||||||| .......... .......... .......... .......... .........G GAATAAAGCC 35 AGCGTCTTTA GCAAAAGTAG CAGATCCTCA TGTAAAACAA TTTGTCGAGA AATGTTTGGC 94530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGTCTTTA GCAAAAGTAG CAGATCCTCA TGTAAAACAA TTTGTCGAGA AATGTTTGGC 95 CCCAGTATCA GTAAGATTGA GTGCAGCTGA ACTTTTGGAA GACCCGTTTC TTTCATCTGA 94590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGTATCA GTAAGATTGA GTGCAGCTGA ACTTTTGGAA GACCCGTTTC TTTCATCTGA 155 GAGCTTGAAA ACCCCCGCAT GTGATCATTT GCAGCCCACA AATTTTGTGC CTGAAGCACA 94650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTTGAAA ACCCCCGCAT GTGATCATTT GCAGCCCACA AATTTTGTGC CTGAAGCACA 215 AAGCTTGCCA AAGTCGATTT TCATGGATGT AGACCTTGCA CAAAAGATGC ACAGTGGCAT 94710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTGCCA AAGTCGATTT TCATGGATGT AGACCTTGCA CAAAAGATGC ACAGTGGCAT 275 GTCCATAGAA AGCAAGACTG CATCTCCTCA TTTTTCTAAT CTAGAAATCG TGAGACGAAA 94770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCATAGAA AGCAAGACTG CATCTCCTCA TTTTTCTAAT CTAGAAATCG TGAGACGAAA 335 TGGGAGAAAC GAATTTAGGT TACAAGGTGA CAAGCATGAT GATCGTTCAA TTGTGTTTTC 94830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAGAAAC GAATTTAGGT TACAAGGTGA CAAGCATGAT GATCGTTCAA TTGTGTTTTC 395 ACTGCGAATA GCTGAATTGG CTGGTATTTG ATCATTCTTA CAGAATAATA CATGGAGTAT 94890 |||||||||| |||||||||| ||| ACTGCGAATA GCTGAATTGG CTG....... .......... .......... .......... 418 TTGCAAGCAA ATGTTTGACT CTTTTCTCTA TTTTTAACAG GTCGGATCAG GCATGTGCAC 94950 |||||||||| |||||||||| .......... .......... .......... .......... GTCGGATCAG GCATGTGCAC 438 TTTGTATATT GTATTGATGC TGACACTGTG ATGTCAATAG CTAGTGAGAT GGCAGAGGAG 95010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTATATT GTATTGATGC TGACACTGTG ATGTCAATAG CTAGTGAGAT GGCAGAGGAG 498 CTTGAGTTGT TGAATGACGA TGTGGCAACA ATAGCTGAAT TGATTACCGA CTTCATTTTC 95070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAGTTGT TGAATGACGA TGTGGCAACA ATAGCTGAAT TGATTACCGA CTTCATTTTC 558 AAACTCTCAA CAATCCAGAA ATATTCTTTT GGGAGTTTGT CTGCAGTGAA TAACTTATCC 95130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTCTCAA CAATCCAGAA ATATTCTTTT GGGAGTTTGT CTGCAGTGAA TAACTTATCC 618 GATGATTCAA CTTTGATAAT CGAAGATCCT ATTGTCTGTG AAGGCATTAC ATCTTTGAAT 95190 ||||| | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAATTCA CTTTGATAAT CGAAGATCCT ATTGTCTGTG AAGGCATTAC ATCTTTGAAT 678 C 95191 | C 679 hqPGS_C08SLm0006K11.1+_SGN-E551384+ (94351 94374,94460 94853,94931 95191) ******************************************************************************** EST sequence 17 +strand 554 n (File: SGN-E264468+) 1 AATTTATAAG AAAGTCACGT CGGGAATAAA GCCAGCGTCT TTAGCAAAAG TTGCAGATCC 61 TCATGTAAAA CAATTTGTCG AGAAATGTTT GGCCCCAGTA TCAGTAAGAT TGAGTGCAGC 121 TGAACTTTTG GAAGACCCGT TTCTTTCATC TGAGAGCTTG AAAACCCCCG CATGTGATCA 181 TTTGCAGCCC ACAAATTTTG TGCCTGAAGC ACAAAGCTTG CCAAAGTCGA TTTTCATGGA 241 TGTAGACCTT GCACAAAAGA TGCACAGTGG CATGTCCATA GAAAGCAAGA CTGCATCTCC 301 TCATTTTTCT AATCTAGAAA TCGTGAGACG AAATGGGAGA AACGAATTTA GGTTACAAGG 361 TGACAAGCAT GATGATCGTT CAATTGTGTT TTCACTGCGA ATAGCTGAAT TGGCTGGTCG 421 GATCAGGCAT GTGCACTTTG TATATTGTAT TGATGCTGAC ACTGTGATGT CAATAGCTAG 481 TGAGATGGCA GAGGAGCTTG AGTTGTTGAA TGACGATGTG GCAACAATAG CCTGATTGAT 541 TACCGACTTC ATTT Predicted gene structure (within gDNA segment 93649 to 95678): Exon 1 94353 94374 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 94375 94459 ( 85 n); Pd: 0.077 (s: 0), Pa: 0.995 (s: 0.98) Exon 2 94460 94853 ( 394 n); cDNA 23 416 ( 394 n); score: 0.997 Intron 2 94854 94930 ( 77 n); Pd: 0.919 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 94931 95068 ( 138 n); cDNA 417 554 ( 138 n); score: 0.978 MATCH C08SLm0006K11.1+ SGN-E264468+ 0.992 554 1.000 C PGS_C08SLm0006K11.1+_SGN-E264468+ (94353 94374,94460 94853,94931 95068) Alignment (genomic DNA sequence = upper lines): AATTTATAAG AAAGTCACGT CGGTGAGTTT TAGTTGTTTT GGGCTTTTAC TGTTACTTTA 94412 |||||||||| |||||||||| || AATTTATAAG AAAGTCACGT CG........ .......... .......... .......... 22 TTCTACTTGA AAATAATTGC AATGCTAAGG AAAATATTTG ATTTCAGGGA ATAAAGCCAG 94472 ||| |||||||||| .......... .......... .......... .......... .......GGA ATAAAGCCAG 35 CGTCTTTAGC AAAAGTAGCA GATCCTCATG TAAAACAATT TGTCGAGAAA TGTTTGGCCC 94532 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCTTTAGC AAAAGTTGCA GATCCTCATG TAAAACAATT TGTCGAGAAA TGTTTGGCCC 95 CAGTATCAGT AAGATTGAGT GCAGCTGAAC TTTTGGAAGA CCCGTTTCTT TCATCTGAGA 94592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTATCAGT AAGATTGAGT GCAGCTGAAC TTTTGGAAGA CCCGTTTCTT TCATCTGAGA 155 GCTTGAAAAC CCCCGCATGT GATCATTTGC AGCCCACAAA TTTTGTGCCT GAAGCACAAA 94652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGAAAAC CCCCGCATGT GATCATTTGC AGCCCACAAA TTTTGTGCCT GAAGCACAAA 215 GCTTGCCAAA GTCGATTTTC ATGGATGTAG ACCTTGCACA AAAGATGCAC AGTGGCATGT 94712 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGCCAAA GTCGATTTTC ATGGATGTAG ACCTTGCACA AAAGATGCAC AGTGGCATGT 275 CCATAGAAAG CAAGACTGCA TCTCCTCATT TTTCTAATCT AGAAATCGTG AGACGAAATG 94772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGAAAG CAAGACTGCA TCTCCTCATT TTTCTAATCT AGAAATCGTG AGACGAAATG 335 GGAGAAACGA ATTTAGGTTA CAAGGTGACA AGCATGATGA TCGTTCAATT GTGTTTTCAC 94832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAACGA ATTTAGGTTA CAAGGTGACA AGCATGATGA TCGTTCAATT GTGTTTTCAC 395 TGCGAATAGC TGAATTGGCT GGTATTTGAT CATTCTTACA GAATAATACA TGGAGTATTT 94892 |||||||||| |||||||||| | TGCGAATAGC TGAATTGGCT G......... .......... .......... .......... 416 GCAAGCAAAT GTTTGACTCT TTTCTCTATT TTTAACAGGT CGGATCAGGC ATGTGCACTT 94952 || |||||||||| |||||||||| .......... .......... .......... ........GT CGGATCAGGC ATGTGCACTT 438 TGTATATTGT ATTGATGCTG ACACTGTGAT GTCAATAGCT AGTGAGATGG CAGAGGAGCT 95012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATATTGT ATTGATGCTG ACACTGTGAT GTCAATAGCT AGTGAGATGG CAGAGGAGCT 498 TGAGTTGTTG AATGACGATG TGGCAACAAT AGCTGAATTG ATTACCGACT TCATTT 95068 |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| |||||| TGAGTTGTTG AATGACGATG TGGCAACAAT AGCCTGATTG ATTACCGACT TCATTT 554 hqPGS_C08SLm0006K11.1+_SGN-E264468+ (94353 94374,94460 94853,94931 95068) ******************************************************************************** EST sequence 33 +strand 707 n (File: SGN-E353867+) 1 TTCATCTGAG AGCTTGAAAA CCCCCGCATG TGATCATTTG CAGCCCACAA ATTTTGTGCC 61 TGAAGCACAA AGCTTGCCAA AGTCGATTTT CATGGATGTA GACCTTGCAC AAAAGATGCA 121 CAGTGGCATG TCCATAGAAA GCAAGACTGC ATCTCCTCAT TTTTCTAATC TAGAAATCGT 181 GAGACGAAAT GGGAGAAACG AATTTAGGTT ACAAGGTGAC AAGCATGATG ATCGTTCAAT 241 TGTGTTTTCA CTGCGAATAG CTGAATTGGC TGGTCGGATC AGGCATGTGC ACTTTGTATA 301 TTGTATTGAT GCTGACACTG TGATGTCAAT AGCTAGTGAG ATGGCAGAGG AGCTTGAGTT 361 GTTGAATGAC GATGTGGCAA CAATAGCTGA ATTGATTACC GACTTCATTT TCAAACTCTC 421 AACAATCCAG AAATATTCTT TTGGGAGTTT GTCTGCAGTG AATAACTTAT CCGATGATTC 481 AACTTTGATA ATCGAAGATC CTATTGTCTG TGAAGGCATT ACATCTTTGA ATCAAGGGAT 541 AGCATCAACC TCAGATGTGG AGTATAACAA CGTTTTAAGG TCTCTTGGCA ATGAGTCAGA 601 TAACATCAAT GTCCACACTC AAAGCAACAG TAAGGGGAGT CTANGTGATG CTGTAATGAG 661 TGATTGTACC ACCAAAACTT CAGGGATCTC CTCTGATAGC TTGCTGA Predicted gene structure (within gDNA segment 93982 to 95975): Exon 1 94582 94853 ( 272 n); cDNA 1 272 ( 272 n); score: 1.000 Intron 1 94854 94930 ( 77 n); Pd: 0.919 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 94931 95365 ( 435 n); cDNA 273 707 ( 435 n); score: 0.998 MATCH C08SLm0006K11.1+ SGN-E353867+ 0.999 707 1.000 C PGS_C08SLm0006K11.1+_SGN-E353867+ (94582 94853,94931 95365) Alignment (genomic DNA sequence = upper lines): TTCATCTGAG AGCTTGAAAA CCCCCGCATG TGATCATTTG CAGCCCACAA ATTTTGTGCC 94641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCTGAG AGCTTGAAAA CCCCCGCATG TGATCATTTG CAGCCCACAA ATTTTGTGCC 60 TGAAGCACAA AGCTTGCCAA AGTCGATTTT CATGGATGTA GACCTTGCAC AAAAGATGCA 94701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCACAA AGCTTGCCAA AGTCGATTTT CATGGATGTA GACCTTGCAC AAAAGATGCA 120 CAGTGGCATG TCCATAGAAA GCAAGACTGC ATCTCCTCAT TTTTCTAATC TAGAAATCGT 94761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGGCATG TCCATAGAAA GCAAGACTGC ATCTCCTCAT TTTTCTAATC TAGAAATCGT 180 GAGACGAAAT GGGAGAAACG AATTTAGGTT ACAAGGTGAC AAGCATGATG ATCGTTCAAT 94821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACGAAAT GGGAGAAACG AATTTAGGTT ACAAGGTGAC AAGCATGATG ATCGTTCAAT 240 TGTGTTTTCA CTGCGAATAG CTGAATTGGC TGGTATTTGA TCATTCTTAC AGAATAATAC 94881 |||||||||| |||||||||| |||||||||| || TGTGTTTTCA CTGCGAATAG CTGAATTGGC TG........ .......... .......... 272 ATGGAGTATT TGCAAGCAAA TGTTTGACTC TTTTCTCTAT TTTTAACAGG TCGGATCAGG 94941 | |||||||||| .......... .......... .......... .......... .........G TCGGATCAGG 283 CATGTGCACT TTGTATATTG TATTGATGCT GACACTGTGA TGTCAATAGC TAGTGAGATG 95001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTGCACT TTGTATATTG TATTGATGCT GACACTGTGA TGTCAATAGC TAGTGAGATG 343 GCAGAGGAGC TTGAGTTGTT GAATGACGAT GTGGCAACAA TAGCTGAATT GATTACCGAC 95061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGGAGC TTGAGTTGTT GAATGACGAT GTGGCAACAA TAGCTGAATT GATTACCGAC 403 TTCATTTTCA AACTCTCAAC AATCCAGAAA TATTCTTTTG GGAGTTTGTC TGCAGTGAAT 95121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTTTCA AACTCTCAAC AATCCAGAAA TATTCTTTTG GGAGTTTGTC TGCAGTGAAT 463 AACTTATCCG ATGATTCAAC TTTGATAATC GAAGATCCTA TTGTCTGTGA AGGCATTACA 95181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTATCCG ATGATTCAAC TTTGATAATC GAAGATCCTA TTGTCTGTGA AGGCATTACA 523 TCTTTGAATC AAGGGATAGC ATCAACCTCA GATGTGGAGT ATAACAACGT TTTAAGGTCT 95241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGAATC AAGGGATAGC ATCAACCTCA GATGTGGAGT ATAACAACGT TTTAAGGTCT 583 CTTGGCAATG AGTCAGATAA CATCAATGTC CACACTCAAA GCAACAGTAA GGGGAGTCTA 95301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCAATG AGTCAGATAA CATCAATGTC CACACTCAAA GCAACAGTAA GGGGAGTCTA 643 GGTGATGCTG TAATGAGTGA TTGTACCACC AAAACTTCAG GGATCTCCTC TGATAGCTTG 95361 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| NGTGATGCTG TAATGAGTGA TTGTACCACC AAAACTTCAG GGATCTCCTC TGATAGCTTG 703 CTGA 95365 |||| CTGA 707 hqPGS_C08SLm0006K11.1+_SGN-E353867+ (94582 94853,94931 95365) ******************************************************************************** EST sequence 67 +strand 538 n (File: SGN-E334047+) 1 TCTCTGCACT ATTCAAGCAT TCACCTAATC CAATAATACA GAAACAAAAA AAAAAAGATT 61 CTCCAAAATT TGAATGCAAA TATATAGGTA AGAGGTAATA ATTCATACAT ATCATTTGTC 121 ACCTACAAAA AAGAAAAAAG AAAAAAATTC AACCGGTGGA AGAATCTGCA TCACAAATCA 181 AGACTCCTCT GTTATCCAAA TTTGATCATG GCATTGCATC AAGCTCTAAT GTTAAAGGCC 241 ACAAGGATGA TGAAGATGAA AATTCTCCTG TCGAACAAGT TGCTCTTACT GTTCCAACAA 301 CTGATGATCC TTCATTACCT GTTTTAACTT TTCGAATGTG GCTTTTACGG ACAGTTTCTT 361 GCGTTTTGTT ATCATTTCTG AACCAATTCT TTTGGTACAG AACAGAGCCA TTGACAATTA 421 CAGCAATTTC AGCTCAAATA GCTGTGGATC CTTTGGGTCA ACTTATGGCT GCAAAGATAA 481 CAAAGAGGGT ATTTTTGCAA GGATCTAAAT GGGAATTCAG TTTAAATCCA GGCCCTTT Predicted gene structure (within gDNA segment 96420 to 98388): Exon 1 97083 97274 ( 192 n); cDNA 1 192 ( 192 n); score: 0.974 Intron 1 97275 97432 ( 158 n); Pd: 0.996 (s: 0.94), Pa: 0.716 (s: 0.96) Exon 2 97433 97778 ( 346 n); cDNA 193 538 ( 346 n); score: 0.980 MATCH C08SLm0006K11.1+ SGN-E334047+ 0.978 538 1.000 C PGS_C08SLm0006K11.1+_SGN-E334047+ (97083 97274,97433 97778) Alignment (genomic DNA sequence = upper lines): TCTCTGTACT ATTCAAGCAT TCACCTAATC CAATAATACA GAAACAAAAA AAAAAAGATT 97142 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTGCACT ATTCAAGCAT TCACCTAATC CAATAATACA GAAACAAAAA AAAAAAGATT 60 CTCCAAAATT TGAATGCAAA TATATAGGTA AGAGGTAATA ATTCATACAT ATCATTTGTC 97202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAAAATT TGAATGCAAA TATATAGGTA AGAGGTAATA ATTCATACAT ATCATTTGTC 120 ACATACAAAA AAGAAAAAAG AAAAAAATTC AACCAATGGA AGAATCTGCA TCAGAAATCA 97262 || ||||||| |||||||||| |||||||||| |||| |||| |||||||||| ||| |||||| ACCTACAAAA AAGAAAAAAG AAAAAAATTC AACCGGTGGA AGAATCTGCA TCACAAATCA 180 AGACTCCTCT GTGTAAGACT CTTTTTTCTC CAACACAATT TAATTCTTTA AAAATGTCGA 97322 |||||||||| || AGACTCCTCT GT........ .......... .......... .......... .......... 192 TATTAGATCC TAAAAAAACG AATCAGTTCT CACACGTTGT AACAACATTT ATGAAAGGAT 97382 .......... .......... .......... .......... .......... .......... 192 CCGAAAGGTG TATTTCAGAT CCAAAACTGA AATCTCTCTC TGTTTTGTAG TATCCAATTT 97442 ||||||| || .......... .......... .......... .......... .......... TATCCAAATT 202 TGATCATGGC ATTGCATCAA GCTCTAATGT TAAAGTCCAC AAGGATGATG AAGATGAAAA 97502 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TGATCATGGC ATTGCATCAA GCTCTAATGT TAAAGGCCAC AAGGATGATG AAGATGAAAA 262 TTCTCCTGTC GAACAAGTTG CTCTTACTGT TCCAACAACT GATGATCCTT CATTACCTGT 97562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCTGTC GAACAAGTTG CTCTTACTGT TCCAACAACT GATGATCCTT CATTACCTGT 322 TTTAACTTTT CGAATGTGGT TTTTAGGGAC AGTTTCTTGT GTTTTGTTAT CATTTCTGAA 97622 |||||||||| ||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| TTTAACTTTT CGAATGTGGC TTTTACGGAC AGTTTCTTGC GTTTTGTTAT CATTTCTGAA 382 CCAATTCTTT TGGTACAGAA CAGAGCCATT GACAATTACA GCAATTTCAG CTCAAATAGC 97682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTCTTT TGGTACAGAA CAGAGCCATT GACAATTACA GCAATTTCAG CTCAAATAGC 442 TGTGGTTCCT TTGGGTCAAC TTATGGCTGC AAAGATAACA AAAAGGGTAT TTTTGCAAGG 97742 ||||| |||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGTGGATCCT TTGGGTCAAC TTATGGCTGC AAAGATAACA AAGAGGGTAT TTTTGCAAGG 502 ATCTAAATGG GAATTCAGTT TAAATCCAGG CCCTTT 97778 |||||||||| |||||||||| |||||||||| |||||| ATCTAAATGG GAATTCAGTT TAAATCCAGG CCCTTT 538 hqPGS_C08SLm0006K11.1+_SGN-E334047+ (97083 97274,97433 97778) ******************************************************************************** EST sequence 79 +strand 289 n (File: SGN-E331076+) 1 TTCACCTAAT CCAATGATTC AGAAGCAAAA AAAAAAAGAT TCTTCAAAAT TTGAATGCAA 61 ATATATAGGT AAGAGGTAAT AATTCATACA TATCATTTGT GACATACAAA AAAGAAAAAA 121 GATAAAAATT CAACCAATGG AAGAATCTGC ATCAGAAATC AAGACTCCTC TGTTATCCAA 181 TTTTGATCAT GGCATTGCAT CAAGCTCTAA TGTTAAAGTC CACAAGGATG ATGAAGATGA 241 AAATTCTCCT GTCGAACAAG TTGCTTTTAC TGTTCCAACA ACTGATGAT Predicted gene structure (within gDNA segment 96277 to 98158): Exon 1 97102 97274 ( 173 n); cDNA 1 173 ( 173 n); score: 0.965 Intron 1 97275 97432 ( 158 n); Pd: 0.996 (s: 1.00), Pa: 0.716 (s: 1.00) Exon 2 97433 97548 ( 116 n); cDNA 174 289 ( 116 n); score: 0.991 MATCH C08SLm0006K11.1+ SGN-E331076+ 0.976 289 1.000 C PGS_C08SLm0006K11.1+_SGN-E331076+ (97102 97274,97433 97548) Alignment (genomic DNA sequence = upper lines): TTCACCTAAT CCAATAATAC AGAAACAAAA AAAAAAAGAT TCTCCAAAAT TTGAATGCAA 97161 |||||||||| ||||| || | |||| ||||| |||||||||| ||| |||||| |||||||||| TTCACCTAAT CCAATGATTC AGAAGCAAAA AAAAAAAGAT TCTTCAAAAT TTGAATGCAA 60 ATATATAGGT AAGAGGTAAT AATTCATACA TATCATTTGT CACATACAAA AAAGAAAAAA 97221 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATATATAGGT AAGAGGTAAT AATTCATACA TATCATTTGT GACATACAAA AAAGAAAAAA 120 GAAAAAAATT CAACCAATGG AAGAATCTGC ATCAGAAATC AAGACTCCTC TGTGTAAGAC 97281 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| GATAAAAATT CAACCAATGG AAGAATCTGC ATCAGAAATC AAGACTCCTC TGT....... 173 TCTTTTTTCT CCAACACAAT TTAATTCTTT AAAAATGTCG ATATTAGATC CTAAAAAAAC 97341 .......... .......... .......... .......... .......... .......... 173 GAATCAGTTC TCACACGTTG TAACAACATT TATGAAAGGA TCCGAAAGGT GTATTTCAGA 97401 .......... .......... .......... .......... .......... .......... 173 TCCAAAACTG AAATCTCTCT CTGTTTTGTA GTATCCAATT TTGATCATGG CATTGCATCA 97461 ||||||||| |||||||||| |||||||||| .......... .......... .......... .TATCCAATT TTGATCATGG CATTGCATCA 202 AGCTCTAATG TTAAAGTCCA CAAGGATGAT GAAGATGAAA ATTCTCCTGT CGAACAAGTT 97521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCTAATG TTAAAGTCCA CAAGGATGAT GAAGATGAAA ATTCTCCTGT CGAACAAGTT 262 GCTCTTACTG TTCCAACAAC TGATGAT 97548 ||| |||||| |||||||||| ||||||| GCTTTTACTG TTCCAACAAC TGATGAT 289 hqPGS_C08SLm0006K11.1+_SGN-E331076+ (97102 97274,97433 97548) ******************************************************************************** EST sequence 59 +strand 704 n (File: SGN-E368500+) 1 TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 61 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 121 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 181 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 241 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 301 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 361 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 421 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 481 ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 541 ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 601 TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 661 TTTGCAAGGA TCTAAATGGA AATTCAGTTT AAATCCAGGC CCTT Predicted gene structure (within gDNA segment 96474 to 98387): Exon 1 97074 97777 ( 704 n); cDNA 1 704 ( 704 n); score: 0.999 MATCH C08SLm0006K11.1+ SGN-E368500+ 0.999 704 1.000 C PGS_C08SLm0006K11.1+_SGN-E368500+ (97074 97777) Alignment (genomic DNA sequence = upper lines): TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 97133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 60 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 97193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 120 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 97253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 180 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 97313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 240 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 97373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 300 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 97433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 360 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 97493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 420 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 97553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 480 ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 97613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 540 ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 97673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 600 TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 97733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 660 TTTGCAAGGA TCTAAATGGG AATTCAGTTT AAATCCAGGC CCTT 97777 |||||||||| ||||||||| |||||||||| |||||||||| |||| TTTGCAAGGA TCTAAATGGA AATTCAGTTT AAATCCAGGC CCTT 704 hqPGS_C08SLm0006K11.1+_SGN-E368500+ (97074 97777) ******************************************************************************** EST sequence 6 +strand 475 n (File: SGN-E242654+) 1 TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 61 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 121 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 181 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 241 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 301 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 361 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 421 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGAT Predicted gene structure (within gDNA segment 96474 to 98158): Exon 1 97074 97548 ( 475 n); cDNA 1 475 ( 475 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E242654+ 1.000 475 1.000 C PGS_C08SLm0006K11.1+_SGN-E242654+ (97074 97548) Alignment (genomic DNA sequence = upper lines): TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 97133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 60 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 97193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 120 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 97253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 180 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 97313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 240 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 97373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 300 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 97433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 360 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 97493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 420 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGAT 97548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGAT 475 hqPGS_C08SLm0006K11.1+_SGN-E242654+ (97074 97548) ******************************************************************************** EST sequence 128 -strand 773 n (File: SGN-E368499-) 1 AAAAAAAAAA GATTCTCCAA AATTTAAATG CAAATATATA GGTAAGAGGT AATAATTCAT 61 ACATATCATT TGTCACATAC AAAAAAGAAA AAAGAAAAAA ATTCAACCAA TGGAAGAATC 121 TGCATCAGAA ATCAAGACTC CTCTGTGTAA GACTCTTTTT TCTCCAACAC AATTTAATTC 181 TTTAAAAATG TCGATATTAG ATCCTAAAAA AACGAATCAG TTCTCACACG TTGTAACAAC 241 ATTTATGAAA GGATCCGAAA GGTGTATTTC AGATCCAAAA CTGAAATCTC TCTCTGTTTT 301 GTAGTATCCA ATTTTGATCA TGGCATTGCA TCAAGCTCTA ATGTTAAAGT CCACAAGGAT 361 GATGAAGATG AAAATTCTCC TGTCGAACAA GTTGCTCTTA CTGTTCCAAC AACTGATGAT 421 CCTTCATTAC CTGTTTTAAC TTTTCGAATG TGGTTTTTAG GGACAGTTTC TTGTGTTTTG 481 TTATCATTTC TGAACCAATT CTTTTGGTAC AGAACAGAGC CATTGACAAT TACAGCAATT 541 TCAGCTCAAA TAGCTGTGGT TCCTTTGGGT CAACTTATGG CTGCAAAGAT AACAAAAAGG 601 GTATTTTTGC AAGGATCTAA ATGGGAATTC AGTTTAAATC CAGGCCCTTT TAATGTTAAA 661 GAACATGTCC TCATCACCAT TTTTGCAAAT TCTGGTGCTG GAACTGTTTA TGCTATTCAT 721 GTTGTCACTG CTGTTAAAGT CTTTTATAAG AAAGACATTA CCTTAAAAAA AAA Predicted gene structure (within gDNA segment 96519 to 98582): Exon 1 97129 97892 ( 764 n); cDNA 1 764 ( 764 n); score: 0.999 MATCH C08SLm0006K11.1+ SGN-E368499- 0.999 764 0.988 C PGS_C08SLm0006K11.1+_SGN-E368499- (97129 97892) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA GATTCTCCAA AATTTGAATG CAAATATATA GGTAAGAGGT AATAATTCAT 97188 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA GATTCTCCAA AATTTAAATG CAAATATATA GGTAAGAGGT AATAATTCAT 60 ACATATCATT TGTCACATAC AAAAAAGAAA AAAGAAAAAA ATTCAACCAA TGGAAGAATC 97248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATATCATT TGTCACATAC AAAAAAGAAA AAAGAAAAAA ATTCAACCAA TGGAAGAATC 120 TGCATCAGAA ATCAAGACTC CTCTGTGTAA GACTCTTTTT TCTCCAACAC AATTTAATTC 97308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATCAGAA ATCAAGACTC CTCTGTGTAA GACTCTTTTT TCTCCAACAC AATTTAATTC 180 TTTAAAAATG TCGATATTAG ATCCTAAAAA AACGAATCAG TTCTCACACG TTGTAACAAC 97368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAAAATG TCGATATTAG ATCCTAAAAA AACGAATCAG TTCTCACACG TTGTAACAAC 240 ATTTATGAAA GGATCCGAAA GGTGTATTTC AGATCCAAAA CTGAAATCTC TCTCTGTTTT 97428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATGAAA GGATCCGAAA GGTGTATTTC AGATCCAAAA CTGAAATCTC TCTCTGTTTT 300 GTAGTATCCA ATTTTGATCA TGGCATTGCA TCAAGCTCTA ATGTTAAAGT CCACAAGGAT 97488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTATCCA ATTTTGATCA TGGCATTGCA TCAAGCTCTA ATGTTAAAGT CCACAAGGAT 360 GATGAAGATG AAAATTCTCC TGTCGAACAA GTTGCTCTTA CTGTTCCAAC AACTGATGAT 97548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAGATG AAAATTCTCC TGTCGAACAA GTTGCTCTTA CTGTTCCAAC AACTGATGAT 420 CCTTCATTAC CTGTTTTAAC TTTTCGAATG TGGTTTTTAG GGACAGTTTC TTGTGTTTTG 97608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCATTAC CTGTTTTAAC TTTTCGAATG TGGTTTTTAG GGACAGTTTC TTGTGTTTTG 480 TTATCATTTC TGAACCAATT CTTTTGGTAC AGAACAGAGC CATTGACAAT TACAGCAATT 97668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCATTTC TGAACCAATT CTTTTGGTAC AGAACAGAGC CATTGACAAT TACAGCAATT 540 TCAGCTCAAA TAGCTGTGGT TCCTTTGGGT CAACTTATGG CTGCAAAGAT AACAAAAAGG 97728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTCAAA TAGCTGTGGT TCCTTTGGGT CAACTTATGG CTGCAAAGAT AACAAAAAGG 600 GTATTTTTGC AAGGATCTAA ATGGGAATTC AGTTTAAATC CAGGCCCTTT TAATGTTAAA 97788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTTTGC AAGGATCTAA ATGGGAATTC AGTTTAAATC CAGGCCCTTT TAATGTTAAA 660 GAACATGTCC TCATCACCAT TTTTGCAAAT TCTGGTGCTG GAACTGTTTA TGCTATTCAT 97848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACATGTCC TCATCACCAT TTTTGCAAAT TCTGGTGCTG GAACTGTTTA TGCTATTCAT 720 GTTGTCACTG CTGTTAAAGT CTTTTATAAG AAAGACATTA CCTT 97892 |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTGTCACTG CTGTTAAAGT CTTTTATAAG AAAGACATTA CCTT 764 hqPGS_C08SLm0006K11.1+_SGN-E368499- (97129 97892) ******************************************************************************** EST sequence 30 +strand 546 n (File: SGN-E341887+) 1 TAAGAAGAAA AGCTGAGTAT GAAGAGCACA TCAATTTCCT CATTACTTCC ATATCCAAAA 61 ATCCTCTTCA GCAGAAGAGC ATTTCCCCCA ATTAATTTCT CAAGCACAGC TCCATTTTCA 121 GGGCAGGCAA AATTTCTAAG CATAAATTGC AGTAATAGCT CGGAAAATGG TGAAATGGGG 181 AATTTGAAGG ATGCATTGAC TGGTATAGTG GACGAAAGAG TAGAGGAACT TTTGAAGAGA 241 GAAGAAAATA GGGTTTTACT TGATGGGTTG GAGAAAGCAA CGCTGAGAGT AGAAATGGCA 301 AAGAAAGAAC TTGCTGAAAT TGAAAGACAA GAATTGGAGG CTAAATTGCT AAAGGATTAT 361 ATCACCCAGC TTGAAACTAG AACTTCTGAG ATTGCAGAAT GCCAGAAAGA TATTTTAGAA 421 GCAAGAGCAA TGATTGAAGA AGCTGAGCGT TCCCTCAACG TTAGTGGTGA TGCTAGAAAG 481 AGAGATCCAA CAGACGGAGA TGTAGTGAAT AGAGATGAGG AAAGAGTAGA ATCCGTAAAA 541 GCAGCT Predicted gene structure (within gDNA segment 101443 to 104401): Exon 1 102043 102432 ( 390 n); cDNA 1 390 ( 390 n); score: 1.000 Intron 1 102433 103635 (1203 n); Pd: 0.967 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 103636 103791 ( 156 n); cDNA 391 546 ( 156 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E341887+ 1.000 546 1.000 C PGS_C08SLm0006K11.1+_SGN-E341887+ (102043 102432,103636 103791) Alignment (genomic DNA sequence = upper lines): TAAGAAGAAA AGCTGAGTAT GAAGAGCACA TCAATTTCCT CATTACTTCC ATATCCAAAA 102102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAAGAAA AGCTGAGTAT GAAGAGCACA TCAATTTCCT CATTACTTCC ATATCCAAAA 60 ATCCTCTTCA GCAGAAGAGC ATTTCCCCCA ATTAATTTCT CAAGCACAGC TCCATTTTCA 102162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTCTTCA GCAGAAGAGC ATTTCCCCCA ATTAATTTCT CAAGCACAGC TCCATTTTCA 120 GGGCAGGCAA AATTTCTAAG CATAAATTGC AGTAATAGCT CGGAAAATGG TGAAATGGGG 102222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCAGGCAA AATTTCTAAG CATAAATTGC AGTAATAGCT CGGAAAATGG TGAAATGGGG 180 AATTTGAAGG ATGCATTGAC TGGTATAGTG GACGAAAGAG TAGAGGAACT TTTGAAGAGA 102282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGAAGG ATGCATTGAC TGGTATAGTG GACGAAAGAG TAGAGGAACT TTTGAAGAGA 240 GAAGAAAATA GGGTTTTACT TGATGGGTTG GAGAAAGCAA CGCTGAGAGT AGAAATGGCA 102342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAAATA GGGTTTTACT TGATGGGTTG GAGAAAGCAA CGCTGAGAGT AGAAATGGCA 300 AAGAAAGAAC TTGCTGAAAT TGAAAGACAA GAATTGGAGG CTAAATTGCT AAAGGATTAT 102402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAGAAC TTGCTGAAAT TGAAAGACAA GAATTGGAGG CTAAATTGCT AAAGGATTAT 360 ATCACCCAGC TTGAAACTAG AACTTCTGAG GTATGTTTTA TATATTTGAA GGATTAAGCT 102462 |||||||||| |||||||||| |||||||||| ATCACCCAGC TTGAAACTAG AACTTCTGAG .......... .......... .......... 390 GAATTGTTGG TTTAATATAT AATTTATGTA CACATGTTAC GAAAAGTAAA CAGACATTTG 102522 .......... .......... .......... .......... .......... .......... 390 CGATCAGGTG TCAGGTATAA ATCTCAACAG ACACAAAAAT ACTAGTATGT GATTTCTTTA 102582 .......... .......... .......... .......... .......... .......... 390 CTTCTGTCTT AGCTGTGATG GATAAAGTTA TATGGTAACT GTGGTTGATT GGATAGAGTT 102642 .......... .......... .......... .......... .......... .......... 390 ATTTGGTACG CGTTGTTGGT GGGAGATAGG TATGGCGTAG AATTAGTTTA GGGGCGTGAA 102702 .......... .......... .......... .......... .......... .......... 390 AGCTGACTCG AACGCTATGA AAAATTAAAT CTTTATTATC CCTTCTTACT CGGACTTCAA 102762 .......... .......... .......... .......... .......... .......... 390 TTGTTTCGTC TAGTCATAAC AATTCGATTG AGTAAACATA TGCGCAATAT GACTGTATAA 102822 .......... .......... .......... .......... .......... .......... 390 CTCTATTTAC AAAGGAACAA GTGAATCAAT GCATTTGGGC ATAGGTAGCC CTCTGCTGTT 102882 .......... .......... .......... .......... .......... .......... 390 CAATGTTATG CTGTTATCTC AGTATGTATA GTATCATATT CTAGCTATAT ATTGAGAGAA 102942 .......... .......... .......... .......... .......... .......... 390 AGGGAGAACT TTGTTTTGGA TATTCTTTTT ATATTGACTG GGAATATTAT TGGATCCTAC 103002 .......... .......... .......... .......... .......... .......... 390 ATTTTTGTCA TTATGCATAG ATTGTTTTGA ATTGCAAATT TGCAATTGCT TAACCATGGT 103062 .......... .......... .......... .......... .......... .......... 390 AAAATCCAGA GCAATGATTT GAAATACTTG GAGGCTTTAT AGTAGTCTGT AGATGTAAAT 103122 .......... .......... .......... .......... .......... .......... 390 TCTATGAATT TTCGAGACCA TAATAGAGTT ACTTGATTAT ATGCTCAAAA AAAACTAATG 103182 .......... .......... .......... .......... .......... .......... 390 CATTGTCTTA AGGGATTGTA AACGAACTTC TTACTAAGGC ATACCCGGGC AAAGGGGACT 103242 .......... .......... .......... .......... .......... .......... 390 CTGAAGCAAA CTCTGTCCAG ATTTACAAAA ATCATGTTTT AACCCCTTGT GTTCTCGTGT 103302 .......... .......... .......... .......... .......... .......... 390 TGGATAAAGT GAGACTTACA GAATGTCGAA CTTCAGGAAA CCGTTAAGGA ACCTTGTCCC 103362 .......... .......... .......... .......... .......... .......... 390 CCGGCCCTTG ATCATTGTGT AAATAGAGCA TAATGAACAC AAAAGGATTT TTAGAACTGA 103422 .......... .......... .......... .......... .......... .......... 390 TATCTATTAC TTTGGGATTG AGCATAGTTG AATGATTGAT TGAAATGTTT TAGCACCTTA 103482 .......... .......... .......... .......... .......... .......... 390 CAAAAGGAGG GTGCTTCAAG TGTCCAAACG TCTCAAGAAT GATTACATTG TTCTTAGTAT 103542 .......... .......... .......... .......... .......... .......... 390 TTCAGATGTT CTAAAGACGT CATTGGAGCT TTTCTTGATC AACTTTTTGT CCTCTCTAAT 103602 .......... .......... .......... .......... .......... .......... 390 AGTTAAGGTA CTGATTGGTT GATGCAATTG AAGATTGCAG AATGCCAGAA AGATATTTTA 103662 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTGCAG AATGCCAGAA AGATATTTTA 417 GAAGCAAGAG CAATGATTGA AGAAGCTGAG CGTTCCCTCA ACGTTAGTGG TGATGCTAGA 103722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCAAGAG CAATGATTGA AGAAGCTGAG CGTTCCCTCA ACGTTAGTGG TGATGCTAGA 477 AAGAGAGATC CAACAGACGG AGATGTAGTG AATAGAGATG AGGAAAGAGT AGAATCCGTA 103782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGATC CAACAGACGG AGATGTAGTG AATAGAGATG AGGAAAGAGT AGAATCCGTA 537 AAAGCAGCT 103791 ||||||||| AAAGCAGCT 546 hqPGS_C08SLm0006K11.1+_SGN-E341887+ (102043 102432,103636 103791) ******************************************************************************** EST sequence 48 +strand 564 n (File: SGN-E233655+) 1 AAAAGCTGAG TATGAAGAGC ACATCAATTT CCTCATTACT TCCATATCCA AAAATCCTCT 61 TCAGCAGAAG AGCATTTCCC CCAATTAATT TCTCAAGCAC AGCTCCATTT TCAGGGCAGG 121 CAAAATTTCT AAGCATAAAT TGCAGTAATA GCTCGGAAAA TGGTGAAATG GGGAATTTGA 181 AGGATGCATT GACTGGTATA GTGGACGAAA GAGTAGAGGA ACTTTTGAAG AGAGAAGAAA 241 ATAGGGTTTT ACTTGATGGG TTGGAGAAAG CAACGCTGAG AGTAGAAATG GCAAAGAAAG 301 AACTTGCTGA AATTGAAAGA CAAGAATTGG AGGCTAAATT GCTAAAGGAT TATATCACCC 361 AGCTTGAAAC TAGAACTTCT GAGATTGCAG AATGCCAGAA AGATATTTTA GAAGCAAGAG 421 CAATGATTGA AGAAGCTGAG CGTTCCCTCA ACGTTAGTGG TGATGCTAGA AAGAGAGATC 481 CAACAGACGG AGATGTAGTG AATAGAGATG AGGAAAGAGT AGAATCCGTA AAAGCAGCTT 541 CACTTTCTGC AATTGGTGGC ACAC Predicted gene structure (within gDNA segment 101450 to 104507): Exon 1 102050 102432 ( 383 n); cDNA 1 383 ( 383 n); score: 1.000 Intron 1 102433 103635 (1203 n); Pd: 0.967 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 103636 103816 ( 181 n); cDNA 384 564 ( 181 n); score: 0.994 MATCH C08SLm0006K11.1+ SGN-E233655+ 0.998 564 1.000 C PGS_C08SLm0006K11.1+_SGN-E233655+ (102050 102432,103636 103816) Alignment (genomic DNA sequence = upper lines): AAAAGCTGAG TATGAAGAGC ACATCAATTT CCTCATTACT TCCATATCCA AAAATCCTCT 102109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTGAG TATGAAGAGC ACATCAATTT CCTCATTACT TCCATATCCA AAAATCCTCT 60 TCAGCAGAAG AGCATTTCCC CCAATTAATT TCTCAAGCAC AGCTCCATTT TCAGGGCAGG 102169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCAGAAG AGCATTTCCC CCAATTAATT TCTCAAGCAC AGCTCCATTT TCAGGGCAGG 120 CAAAATTTCT AAGCATAAAT TGCAGTAATA GCTCGGAAAA TGGTGAAATG GGGAATTTGA 102229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATTTCT AAGCATAAAT TGCAGTAATA GCTCGGAAAA TGGTGAAATG GGGAATTTGA 180 AGGATGCATT GACTGGTATA GTGGACGAAA GAGTAGAGGA ACTTTTGAAG AGAGAAGAAA 102289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGCATT GACTGGTATA GTGGACGAAA GAGTAGAGGA ACTTTTGAAG AGAGAAGAAA 240 ATAGGGTTTT ACTTGATGGG TTGGAGAAAG CAACGCTGAG AGTAGAAATG GCAAAGAAAG 102349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGGTTTT ACTTGATGGG TTGGAGAAAG CAACGCTGAG AGTAGAAATG GCAAAGAAAG 300 AACTTGCTGA AATTGAAAGA CAAGAATTGG AGGCTAAATT GCTAAAGGAT TATATCACCC 102409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGCTGA AATTGAAAGA CAAGAATTGG AGGCTAAATT GCTAAAGGAT TATATCACCC 360 AGCTTGAAAC TAGAACTTCT GAGGTATGTT TTATATATTT GAAGGATTAA GCTGAATTGT 102469 |||||||||| |||||||||| ||| AGCTTGAAAC TAGAACTTCT GAG....... .......... .......... .......... 383 TGGTTTAATA TATAATTTAT GTACACATGT TACGAAAAGT AAACAGACAT TTGCGATCAG 102529 .......... .......... .......... .......... .......... .......... 383 GTGTCAGGTA TAAATCTCAA CAGACACAAA AATACTAGTA TGTGATTTCT TTACTTCTGT 102589 .......... .......... .......... .......... .......... .......... 383 CTTAGCTGTG ATGGATAAAG TTATATGGTA ACTGTGGTTG ATTGGATAGA GTTATTTGGT 102649 .......... .......... .......... .......... .......... .......... 383 ACGCGTTGTT GGTGGGAGAT AGGTATGGCG TAGAATTAGT TTAGGGGCGT GAAAGCTGAC 102709 .......... .......... .......... .......... .......... .......... 383 TCGAACGCTA TGAAAAATTA AATCTTTATT ATCCCTTCTT ACTCGGACTT CAATTGTTTC 102769 .......... .......... .......... .......... .......... .......... 383 GTCTAGTCAT AACAATTCGA TTGAGTAAAC ATATGCGCAA TATGACTGTA TAACTCTATT 102829 .......... .......... .......... .......... .......... .......... 383 TACAAAGGAA CAAGTGAATC AATGCATTTG GGCATAGGTA GCCCTCTGCT GTTCAATGTT 102889 .......... .......... .......... .......... .......... .......... 383 ATGCTGTTAT CTCAGTATGT ATAGTATCAT ATTCTAGCTA TATATTGAGA GAAAGGGAGA 102949 .......... .......... .......... .......... .......... .......... 383 ACTTTGTTTT GGATATTCTT TTTATATTGA CTGGGAATAT TATTGGATCC TACATTTTTG 103009 .......... .......... .......... .......... .......... .......... 383 TCATTATGCA TAGATTGTTT TGAATTGCAA ATTTGCAATT GCTTAACCAT GGTAAAATCC 103069 .......... .......... .......... .......... .......... .......... 383 AGAGCAATGA TTTGAAATAC TTGGAGGCTT TATAGTAGTC TGTAGATGTA AATTCTATGA 103129 .......... .......... .......... .......... .......... .......... 383 ATTTTCGAGA CCATAATAGA GTTACTTGAT TATATGCTCA AAAAAAACTA ATGCATTGTC 103189 .......... .......... .......... .......... .......... .......... 383 TTAAGGGATT GTAAACGAAC TTCTTACTAA GGCATACCCG GGCAAAGGGG ACTCTGAAGC 103249 .......... .......... .......... .......... .......... .......... 383 AAACTCTGTC CAGATTTACA AAAATCATGT TTTAACCCCT TGTGTTCTCG TGTTGGATAA 103309 .......... .......... .......... .......... .......... .......... 383 AGTGAGACTT ACAGAATGTC GAACTTCAGG AAACCGTTAA GGAACCTTGT CCCCCGGCCC 103369 .......... .......... .......... .......... .......... .......... 383 TTGATCATTG TGTAAATAGA GCATAATGAA CACAAAAGGA TTTTTAGAAC TGATATCTAT 103429 .......... .......... .......... .......... .......... .......... 383 TACTTTGGGA TTGAGCATAG TTGAATGATT GATTGAAATG TTTTAGCACC TTACAAAAGG 103489 .......... .......... .......... .......... .......... .......... 383 AGGGTGCTTC AAGTGTCCAA ACGTCTCAAG AATGATTACA TTGTTCTTAG TATTTCAGAT 103549 .......... .......... .......... .......... .......... .......... 383 GTTCTAAAGA CGTCATTGGA GCTTTTCTTG ATCAACTTTT TGTCCTCTCT AATAGTTAAG 103609 .......... .......... .......... .......... .......... .......... 383 GTACTGATTG GTTGATGCAA TTGAAGATTG CAGAATGCCA GAAAGATATT TTAGAAGCAA 103669 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTG CAGAATGCCA GAAAGATATT TTAGAAGCAA 417 GAGCAATGAT TGAAGAAGCT GAGCGTTCCC TCAACGTTAG TGGTGATGCT AGAAAGAGAG 103729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAATGAT TGAAGAAGCT GAGCGTTCCC TCAACGTTAG TGGTGATGCT AGAAAGAGAG 477 ATCCAACAGA CGGAGATGTA GTGAATAGAG ATGAGGAAAG AGTAGAATCC GTAAAAGCAG 103789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAACAGA CGGAGATGTA GTGAATAGAG ATGAGGAAAG AGTAGAATCC GTAAAAGCAG 537 CTTCACTTTC TGCAATTGTT GGCACAC 103816 |||||||||| |||||||| | ||||||| CTTCACTTTC TGCAATTGGT GGCACAC 564 hqPGS_C08SLm0006K11.1+_SGN-E233655+ (102050 102432,103636 103816) ******************************************************************************** EST sequence 16 +strand 612 n (File: SGN-E340773+) 1 AAGAAAATAG GGTTTTACTT GATGGGTTGG AGAAAGCAAC GCTGAGAGTA GAAATGGCAA 61 AGAAAGAACT TGCTGAAATT GAAAGACAAG AATTGGAGGC TAAATTGCTA AAGGATTATA 121 TCACCCAGCT TGAAACTAGA ACTTCTGAGT TAAGGTACTG ATTGGTTGAT GCAATTGAAG 181 ATTGCAGAAT GCCAGAAAGA TATTTTAGAA GCAAGAGCAA TGATTGAAGA AGCTGAGCGT 241 TCCCTCAACG TTAGTGGTGA TGCTAGAAAG AGAGATCCAA CAGACGGAGA TGTAGTGAAT 301 AGAGATGAGG AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC TTTCTGCAAT TGTTGGCACA 361 CTTGCAGGAC TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT 421 CTGTCAATCA CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA 481 AGAGACTTCG ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA 541 GGCCTTGCTA CACTTGGAGG TGGACCACCA TTGGAGTTGG ATGCAGCCAG CTTCTGGNTC 601 CATGCTCTTG AT Predicted gene structure (within gDNA segment 101684 to 105240): Exon 1 102284 102432 ( 149 n); cDNA 1 149 ( 149 n); score: 1.000 Intron 1 102433 103604 (1172 n); Pd: 0.967 (s: 1.00), Pa: 0.683 (s: 1.00) Exon 2 103605 103996 ( 392 n); cDNA 150 541 ( 392 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 104425 104495 ( 71 n); cDNA 542 612 ( 71 n); score: 0.972 MATCH C08SLm0006K11.1+ SGN-E340773+ 0.997 612 1.000 C PGS_C08SLm0006K11.1+_SGN-E340773+ (102284 102432,103605 103996,104425 104495) Alignment (genomic DNA sequence = upper lines): AAGAAAATAG GGTTTTACTT GATGGGTTGG AGAAAGCAAC GCTGAGAGTA GAAATGGCAA 102343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAATAG GGTTTTACTT GATGGGTTGG AGAAAGCAAC GCTGAGAGTA GAAATGGCAA 60 AGAAAGAACT TGCTGAAATT GAAAGACAAG AATTGGAGGC TAAATTGCTA AAGGATTATA 102403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAACT TGCTGAAATT GAAAGACAAG AATTGGAGGC TAAATTGCTA AAGGATTATA 120 TCACCCAGCT TGAAACTAGA ACTTCTGAGG TATGTTTTAT ATATTTGAAG GATTAAGCTG 102463 |||||||||| |||||||||| ||||||||| TCACCCAGCT TGAAACTAGA ACTTCTGAG. .......... .......... .......... 149 AATTGTTGGT TTAATATATA ATTTATGTAC ACATGTTACG AAAAGTAAAC AGACATTTGC 102523 .......... .......... .......... .......... .......... .......... 149 GATCAGGTGT CAGGTATAAA TCTCAACAGA CACAAAAATA CTAGTATGTG ATTTCTTTAC 102583 .......... .......... .......... .......... .......... .......... 149 TTCTGTCTTA GCTGTGATGG ATAAAGTTAT ATGGTAACTG TGGTTGATTG GATAGAGTTA 102643 .......... .......... .......... .......... .......... .......... 149 TTTGGTACGC GTTGTTGGTG GGAGATAGGT ATGGCGTAGA ATTAGTTTAG GGGCGTGAAA 102703 .......... .......... .......... .......... .......... .......... 149 GCTGACTCGA ACGCTATGAA AAATTAAATC TTTATTATCC CTTCTTACTC GGACTTCAAT 102763 .......... .......... .......... .......... .......... .......... 149 TGTTTCGTCT AGTCATAACA ATTCGATTGA GTAAACATAT GCGCAATATG ACTGTATAAC 102823 .......... .......... .......... .......... .......... .......... 149 TCTATTTACA AAGGAACAAG TGAATCAATG CATTTGGGCA TAGGTAGCCC TCTGCTGTTC 102883 .......... .......... .......... .......... .......... .......... 149 AATGTTATGC TGTTATCTCA GTATGTATAG TATCATATTC TAGCTATATA TTGAGAGAAA 102943 .......... .......... .......... .......... .......... .......... 149 GGGAGAACTT TGTTTTGGAT ATTCTTTTTA TATTGACTGG GAATATTATT GGATCCTACA 103003 .......... .......... .......... .......... .......... .......... 149 TTTTTGTCAT TATGCATAGA TTGTTTTGAA TTGCAAATTT GCAATTGCTT AACCATGGTA 103063 .......... .......... .......... .......... .......... .......... 149 AAATCCAGAG CAATGATTTG AAATACTTGG AGGCTTTATA GTAGTCTGTA GATGTAAATT 103123 .......... .......... .......... .......... .......... .......... 149 CTATGAATTT TCGAGACCAT AATAGAGTTA CTTGATTATA TGCTCAAAAA AAACTAATGC 103183 .......... .......... .......... .......... .......... .......... 149 ATTGTCTTAA GGGATTGTAA ACGAACTTCT TACTAAGGCA TACCCGGGCA AAGGGGACTC 103243 .......... .......... .......... .......... .......... .......... 149 TGAAGCAAAC TCTGTCCAGA TTTACAAAAA TCATGTTTTA ACCCCTTGTG TTCTCGTGTT 103303 .......... .......... .......... .......... .......... .......... 149 GGATAAAGTG AGACTTACAG AATGTCGAAC TTCAGGAAAC CGTTAAGGAA CCTTGTCCCC 103363 .......... .......... .......... .......... .......... .......... 149 CGGCCCTTGA TCATTGTGTA AATAGAGCAT AATGAACACA AAAGGATTTT TAGAACTGAT 103423 .......... .......... .......... .......... .......... .......... 149 ATCTATTACT TTGGGATTGA GCATAGTTGA ATGATTGATT GAAATGTTTT AGCACCTTAC 103483 .......... .......... .......... .......... .......... .......... 149 AAAAGGAGGG TGCTTCAAGT GTCCAAACGT CTCAAGAATG ATTACATTGT TCTTAGTATT 103543 .......... .......... .......... .......... .......... .......... 149 TCAGATGTTC TAAAGACGTC ATTGGAGCTT TTCTTGATCA ACTTTTTGTC CTCTCTAATA 103603 .......... .......... .......... .......... .......... .......... 149 GTTAAGGTAC TGATTGGTTG ATGCAATTGA AGATTGCAGA ATGCCAGAAA GATATTTTAG 103663 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TTAAGGTAC TGATTGGTTG ATGCAATTGA AGATTGCAGA ATGCCAGAAA GATATTTTAG 208 AAGCAAGAGC AATGATTGAA GAAGCTGAGC GTTCCCTCAA CGTTAGTGGT GATGCTAGAA 103723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAAGAGC AATGATTGAA GAAGCTGAGC GTTCCCTCAA CGTTAGTGGT GATGCTAGAA 268 AGAGAGATCC AACAGACGGA GATGTAGTGA ATAGAGATGA GGAAAGAGTA GAATCCGTAA 103783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGATCC AACAGACGGA GATGTAGTGA ATAGAGATGA GGAAAGAGTA GAATCCGTAA 328 AAGCAGCTTC ACTTTCTGCA ATTGTTGGCA CACTTGCAGG ACTTCCCATT TTCTTAAGTC 103843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGCTTC ACTTTCTGCA ATTGTTGGCA CACTTGCAGG ACTTCCCATT TTCTTAAGTC 388 GTATCTCCAG CAGTTCTGAG CTAATACTCC CTCTGTCAAT CACATTTATT AGTTGTGCTT 103903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCTCCAG CAGTTCTGAG CTAATACTCC CTCTGTCAAT CACATTTATT AGTTGTGCTT 448 TGTTTGGTGT AACCTTCCGC TATGCTGTAA GAAGAGACTT CGATAATTTT CAACTCAAGT 103963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGTGT AACCTTCCGC TATGCTGTAA GAAGAGACTT CGATAATTTT CAACTCAAGT 508 CAGGAACATC TGCAGCATTT GGCGTTGTCA AAGGTATTAT ACTCTCATGC TAGGTATTGT 104023 |||||||||| |||||||||| |||||||||| ||| CAGGAACATC TGCAGCATTT GGCGTTGTCA AAG....... .......... .......... 541 AATGTGTCGC CTTTCTCCTT CCATATTCTT GTGTAATTTT TTGGAATAGG AAGGAGTAGG 104083 .......... .......... .......... .......... .......... .......... 541 TCAAAGTCTT GAGGATTTTA TAGCATCAAG GGTTCATTAT GGGGCTACGC AAGGCATACA 104143 .......... .......... .......... .......... .......... .......... 541 TACCAAAATG AAGGGTTCAA TTGGCGTAGT AATTGATTGG CTAGATTGCG GGTTCAATGT 104203 .......... .......... .......... .......... .......... .......... 541 GCTGAGAAAC AATAATCTCA AGGTTATTCC TTGCTGAGTT TGGATGCTTG TTTCGTTGCT 104263 .......... .......... .......... .......... .......... .......... 541 ATCGATGCAC ACATATTCAG TTCCATCCAT CTTACTACCT TGGGATAAAT TGAAGTATTC 104323 .......... .......... .......... .......... .......... .......... 541 TGGATTTTTT GTCTGTACAT ATGATCCTGT TCTTTCCAAA ACGAGTTTCT GCGATAATTT 104383 .......... .......... .......... .......... .......... .......... 541 GTTTTTTTAA GGTTAAAAAG ATTCTATTGC ATTCAATGCA GGCCTTGCTA CACTTGGAGG 104443 ||||||||| |||||||||| .......... .......... .......... .......... .GCCTTGCTA CACTTGGAGG 560 TGGACCACCA TTGGAGTTGG ATGCAGCCAG CTTCTGGTCC CATGCTCTTG AT 104495 |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| || TGGACCACCA TTGGAGTTGG ATGCAGCCAG CTTCTGGNTC CATGCTCTTG AT 612 hqPGS_C08SLm0006K11.1+_SGN-E340773+ (102284 102432,103605 103996,104425 104495) ******************************************************************************** EST sequence 80 +strand 648 n (File: SGN-E241885+) 1 AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 61 TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 121 CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 181 ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA GGCCTTGCTA 241 CACTTGGAGG TGGACCACCA TTGGAGTTGG ATGCAGCCAG CTTCTGGTCC CATGCTCTTG 301 ATGGCGCAGT CTATGTCTCG GAGAATCTTT TGATCTTCCT TTTTGCTGGA GTTGGCCTGG 361 ATTTATGCTT TAAGCTGAGG ATTTTGAGCC CTTTTCCCAT TGATAGATCA ATTTCAGAGA 421 CGGATAAAAG CTAAACATCT TGTTGCCTAT TTATTACTTC TGAGTGTATA TACAGAGACC 481 CAGTAAATTA ACTCTCTAAC AATTGCTTAG ATAGAATTAT ACTTGAAAAG CGCCATTCAC 541 TGCAATTATC CATAAATTCA GTAAAATATT GTCAGGTCAG TCACAGGAGA CTAGTTTCAG 601 AAGGGATAAA GCTGCACTTC GAGTATCTTT CTGTCATTCA AGTTATCT Predicted gene structure (within gDNA segment 103166 to 105451): Exon 1 103766 103996 ( 231 n); cDNA 1 231 ( 231 n); score: 1.000 Intron 1 103997 104424 ( 428 n); Pd: 0.996 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 104425 104841 ( 417 n); cDNA 232 648 ( 417 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E241885+ 1.000 648 1.000 C PGS_C08SLm0006K11.1+_SGN-E241885+ (103766 103996,104425 104841) Alignment (genomic DNA sequence = upper lines): AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 103825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 60 TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 103885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 120 CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 103945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 180 ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA GGTATTATAC 104005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA G......... 231 TCTCATGCTA GGTATTGTAA TGTGTCGCCT TTCTCCTTCC ATATTCTTGT GTAATTTTTT 104065 .......... .......... .......... .......... .......... .......... 231 GGAATAGGAA GGAGTAGGTC AAAGTCTTGA GGATTTTATA GCATCAAGGG TTCATTATGG 104125 .......... .......... .......... .......... .......... .......... 231 GGCTACGCAA GGCATACATA CCAAAATGAA GGGTTCAATT GGCGTAGTAA TTGATTGGCT 104185 .......... .......... .......... .......... .......... .......... 231 AGATTGCGGG TTCAATGTGC TGAGAAACAA TAATCTCAAG GTTATTCCTT GCTGAGTTTG 104245 .......... .......... .......... .......... .......... .......... 231 GATGCTTGTT TCGTTGCTAT CGATGCACAC ATATTCAGTT CCATCCATCT TACTACCTTG 104305 .......... .......... .......... .......... .......... .......... 231 GGATAAATTG AAGTATTCTG GATTTTTTGT CTGTACATAT GATCCTGTTC TTTCCAAAAC 104365 .......... .......... .......... .......... .......... .......... 231 GAGTTTCTGC GATAATTTGT TTTTTTAAGG TTAAAAAGAT TCTATTGCAT TCAATGCAGG 104425 | .......... .......... .......... .......... .......... .........G 232 CCTTGCTACA CTTGGAGGTG GACCACCATT GGAGTTGGAT GCAGCCAGCT TCTGGTCCCA 104485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGCTACA CTTGGAGGTG GACCACCATT GGAGTTGGAT GCAGCCAGCT TCTGGTCCCA 292 TGCTCTTGAT GGCGCAGTCT ATGTCTCGGA GAATCTTTTG ATCTTCCTTT TTGCTGGAGT 104545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTGAT GGCGCAGTCT ATGTCTCGGA GAATCTTTTG ATCTTCCTTT TTGCTGGAGT 352 TGGCCTGGAT TTATGCTTTA AGCTGAGGAT TTTGAGCCCT TTTCCCATTG ATAGATCAAT 104605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCTGGAT TTATGCTTTA AGCTGAGGAT TTTGAGCCCT TTTCCCATTG ATAGATCAAT 412 TTCAGAGACG GATAAAAGCT AAACATCTTG TTGCCTATTT ATTACTTCTG AGTGTATATA 104665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAGACG GATAAAAGCT AAACATCTTG TTGCCTATTT ATTACTTCTG AGTGTATATA 472 CAGAGACCCA GTAAATTAAC TCTCTAACAA TTGCTTAGAT AGAATTATAC TTGAAAAGCG 104725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGACCCA GTAAATTAAC TCTCTAACAA TTGCTTAGAT AGAATTATAC TTGAAAAGCG 532 CCATTCACTG CAATTATCCA TAAATTCAGT AAAATATTGT CAGGTCAGTC ACAGGAGACT 104785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTCACTG CAATTATCCA TAAATTCAGT AAAATATTGT CAGGTCAGTC ACAGGAGACT 592 AGTTTCAGAA GGGATAAAGC TGCACTTCGA GTATCTTTCT GTCATTCAAG TTATCT 104841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGTTTCAGAA GGGATAAAGC TGCACTTCGA GTATCTTTCT GTCATTCAAG TTATCT 648 hqPGS_C08SLm0006K11.1+_SGN-E241885+ (103766 103996,104425 104841) ******************************************************************************** EST sequence 82 +strand 531 n (File: SGN-E241918+) 1 AAAGAGTATT ATCCGTTTTT GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 61 TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 121 CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 181 ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA GGCCTTGCTA 241 CACTTGGAGG TGGACCACCA TTGGAGTTGG ATGCAGCCAG CTTCTGGTCC CATGCTCTTG 301 ATGGCGCAGT CTATGTCTCG GAGAATCTTT TGATCTTCCT TTTTGCTGGA GTTGGCCTGG 361 ATTTATGCTT TAAGCTGAGG ATTTTGAGCC CTTTTCCCAT TGATAGATCA ATTTCAGAGA 421 CGGATAAAAG CTAAACATCT TGTTGCCTAT TTATTACTTC TGAGTGTATA TACAGAGACC 481 CAGTAAATTA ACTCTCTAAC AATTGCTTAG ATAGAATTAT ACTTGAAAAG C Predicted gene structure (within gDNA segment 102986 to 105334): Exon 1 103766 103996 ( 231 n); cDNA 1 231 ( 231 n); score: 0.974 Intron 1 103997 104424 ( 428 n); Pd: 0.996 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 104425 104724 ( 300 n); cDNA 232 531 ( 300 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-E241918+ 0.989 531 1.000 C PGS_C08SLm0006K11.1+_SGN-E241918+ (103766 103996,104425 104724) Alignment (genomic DNA sequence = upper lines): AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 103825 |||||||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTATT ATCCGTTTTT GCAGCTTCAC TTTCTGCAAT TGTTGGCACA CTTGCAGGAC 60 TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 103885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCATTTT CTTAAGTCGT ATCTCCAGCA GTTCTGAGCT AATACTCCCT CTGTCAATCA 120 CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 103945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTATTAG TTGTGCTTTG TTTGGTGTAA CCTTCCGCTA TGCTGTAAGA AGAGACTTCG 180 ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA GGTATTATAC 104005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ATAATTTTCA ACTCAAGTCA GGAACATCTG CAGCATTTGG CGTTGTCAAA G......... 231 TCTCATGCTA GGTATTGTAA TGTGTCGCCT TTCTCCTTCC ATATTCTTGT GTAATTTTTT 104065 .......... .......... .......... .......... .......... .......... 231 GGAATAGGAA GGAGTAGGTC AAAGTCTTGA GGATTTTATA GCATCAAGGG TTCATTATGG 104125 .......... .......... .......... .......... .......... .......... 231 GGCTACGCAA GGCATACATA CCAAAATGAA GGGTTCAATT GGCGTAGTAA TTGATTGGCT 104185 .......... .......... .......... .......... .......... .......... 231 AGATTGCGGG TTCAATGTGC TGAGAAACAA TAATCTCAAG GTTATTCCTT GCTGAGTTTG 104245 .......... .......... .......... .......... .......... .......... 231 GATGCTTGTT TCGTTGCTAT CGATGCACAC ATATTCAGTT CCATCCATCT TACTACCTTG 104305 .......... .......... .......... .......... .......... .......... 231 GGATAAATTG AAGTATTCTG GATTTTTTGT CTGTACATAT GATCCTGTTC TTTCCAAAAC 104365 .......... .......... .......... .......... .......... .......... 231 GAGTTTCTGC GATAATTTGT TTTTTTAAGG TTAAAAAGAT TCTATTGCAT TCAATGCAGG 104425 | .......... .......... .......... .......... .......... .........G 232 CCTTGCTACA CTTGGAGGTG GACCACCATT GGAGTTGGAT GCAGCCAGCT TCTGGTCCCA 104485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGCTACA CTTGGAGGTG GACCACCATT GGAGTTGGAT GCAGCCAGCT TCTGGTCCCA 292 TGCTCTTGAT GGCGCAGTCT ATGTCTCGGA GAATCTTTTG ATCTTCCTTT TTGCTGGAGT 104545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTGAT GGCGCAGTCT ATGTCTCGGA GAATCTTTTG ATCTTCCTTT TTGCTGGAGT 352 TGGCCTGGAT TTATGCTTTA AGCTGAGGAT TTTGAGCCCT TTTCCCATTG ATAGATCAAT 104605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCTGGAT TTATGCTTTA AGCTGAGGAT TTTGAGCCCT TTTCCCATTG ATAGATCAAT 412 TTCAGAGACG GATAAAAGCT AAACATCTTG TTGCCTATTT ATTACTTCTG AGTGTATATA 104665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAGACG GATAAAAGCT AAACATCTTG TTGCCTATTT ATTACTTCTG AGTGTATATA 472 CAGAGACCCA GTAAATTAAC TCTCTAACAA TTGCTTAGAT AGAATTATAC TTGAAAAGC 104724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAGAGACCCA GTAAATTAAC TCTCTAACAA TTGCTTAGAT AGAATTATAC TTGAAAAGC 531 hqPGS_C08SLm0006K11.1+_SGN-E241918+ (103766 103996,104425 104724) ******************************************************************************** EST sequence 109 +strand 571 n (File: SGN-E352914+) 1 ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 61 TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAGGC 121 ACCAAGACCA TTGTCTCAGT CTGATATAGA GAGAGCAGTG GCTGAATCAA AGAGGACCAG 181 GGTTTCTGCT AAGAAACCAA CTATTGTGAG CTTTCGGTTG GATGATTATG AGGATTTAGA 241 CTGAGACTGG CTCCAGTTGA TGACACACTT GACATCCGTT GAAGATATCA TTCTTTAGGC 301 GTGGCCCAGC CCTTTTTGAA TCTCAATGCT CTAACCTGTT TAGGAATTGG AAGATATATA 361 GGTCATTTAA CTTGCATTGT TTCAATGTTG TAAATACCAT GAACAAGTAA GTAGTCATTG 421 TTACAAGGTT CAGTTTAAAT TTCTCCTCCA CGAGCGTTTA GCTGCAGCAC ACTCATGTGG 481 ACGCATCCCC ATAGTTTTTT TGAAGACTAT ATCATGTAAT ATTGTTTGTT ATTATAAAGG 541 AATTGTCTTT GGAAATACCC CAAAAAAAAA A Predicted gene structure (within gDNA segment 106200 to 104165): Exon 1 105600 105483 ( 118 n); cDNA 1 118 ( 118 n); score: 1.000 Intron 1 105482 105400 ( 83 n); Pd: 0.883 (s: 1.00), Pa: 0.927 (s: 1.00) Exon 2 105399 105286 ( 114 n); cDNA 119 232 ( 114 n); score: 1.000 Intron 2 105285 105186 ( 100 n); Pd: 0.959 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 105185 104855 ( 331 n); cDNA 233 563 ( 331 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E352914+ 1.000 563 0.986 C PGS_C08SLm0006K11.1-_SGN-E352914+ (105600 105483,105399 105286,105185 104855) Alignment (genomic DNA sequence = upper lines): ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 105541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 60 TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAGGT 105481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAG.. 118 GGCTCTCTCT CCCTCTAGAT CAAATATCTG TGCATTTTGT TCTGACTTGT AGAAAAAGAC 105421 .......... .......... .......... .......... .......... .......... 118 ATGGTAACTC CTCAGTTACA GGCACCAAGA CCATTGTCTC AGTCTGATAT AGAGAGAGCA 105361 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GCACCAAGA CCATTGTCTC AGTCTGATAT AGAGAGAGCA 157 GTGGCTGAAT CAAAGAGGAC CAGGGTTTCT GCTAAGAAAC CAACTATTGT GAGCTTTCGG 105301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCTGAAT CAAAGAGGAC CAGGGTTTCT GCTAAGAAAC CAACTATTGT GAGCTTTCGG 217 TTGGATGATT ATGAGGTTCT CACTTATTCT TTTAGGTTAT ATCAAAATGT AAAGTCTGTT 105241 |||||||||| ||||| TTGGATGATT ATGAG..... .......... .......... .......... .......... 232 TGACAGATCA TTGGTGTCTT TTCTTCAAAT AACAATATAT TTTTCATACT TTCAGGATTT 105181 ||||| .......... .......... .......... .......... .......... .....GATTT 237 AGACTGAGAC TGGCTCCAGT TGATGACACA CTTGACATCC GTTGAAGATA TCATTCTTTA 105121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTGAGAC TGGCTCCAGT TGATGACACA CTTGACATCC GTTGAAGATA TCATTCTTTA 297 GGCGTGGCCC AGCCCTTTTT GAATCTCAAT GCTCTAACCT GTTTAGGAAT TGGAAGATAT 105061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGTGGCCC AGCCCTTTTT GAATCTCAAT GCTCTAACCT GTTTAGGAAT TGGAAGATAT 357 ATAGGTCATT TAACTTGCAT TGTTTCAATG TTGTAAATAC CATGAACAAG TAAGTAGTCA 105001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGTCATT TAACTTGCAT TGTTTCAATG TTGTAAATAC CATGAACAAG TAAGTAGTCA 417 TTGTTACAAG GTTCAGTTTA AATTTCTCCT CCACGAGCGT TTAGCTGCAG CACACTCATG 104941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTACAAG GTTCAGTTTA AATTTCTCCT CCACGAGCGT TTAGCTGCAG CACACTCATG 477 TGGACGCATC CCCATAGTTT TTTTGAAGAC TATATCATGT AATATTGTTT GTTATTATAA 104881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACGCATC CCCATAGTTT TTTTGAAGAC TATATCATGT AATATTGTTT GTTATTATAA 537 AGGAATTGTC TTTGGAAATA CCCCAA 104855 |||||||||| |||||||||| |||||| AGGAATTGTC TTTGGAAATA CCCCAA 563 hqPGS_C08SLm0006K11.1-_SGN-E352914+ (105600 105483,105399 105286,105185 104855) ******************************************************************************** EST sequence 18 -strand 375 n (File: SGN-E217505-) 1 TTCGGCACCA GGTTGGATGA TTATGAGGAT TTAGACTGAG ACTGGCTCCA GTTGATGACA 61 CACNTTGACA TCCGTTGAAG ATATCATTCT TTAGGCGTGG CCCAGCCCTT TTTGAATCTC 121 AATGCTCTAA CCTGTTTAGG AATTGGAAGA TATATAGGTC ATTTAACTTG CATTGTTTCA 181 ATGTTGTAAA TACCATGAAC AAGTAAGTAG TCATTGTTAC AAGGTTCAGT TTAAATTTCT 241 CCTCCACGAG CGTTTAGCTG CAGCACACTC ATGTGGACGC ATCCCCATAG TTTTTTTGAA 301 GACTATATCA TGTAATATTG TTTGTTATTA TAAAGGAATT GTCTTTGGAA ATACCCCCAA 361 AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 106047 to 104077): Exon 1 105308 105286 ( 23 n); cDNA 5 27 ( 23 n); score: 0.826 Intron 1 105285 105186 ( 100 n); Pd: 0.959 (s: 0), Pa: 0.998 (s: 0.95) Exon 2 105185 104857 ( 329 n); cDNA 28 357 ( 330 n); score: 0.992 PPA cDNA 359 375 MATCH C08SLm0006K11.1- SGN-E217505- 0.992 352 0.939 C PGS_C08SLm0006K11.1-_SGN-E217505- (105308 105286,105185 104857) Alignment (genomic DNA sequence = upper lines): GCTTTCGGTT GGATGATTAT GAGGTTCTCA CTTATTCTTT TAGGTTATAT CAAAATGTAA 105249 || |||| |||||||||| ||| GCACCAGGTT GGATGATTAT GAG....... .......... .......... .......... 27 AGTCTGTTTG ACAGATCATT GGTGTCTTTT CTTCAAATAA CAATATATTT TTCATACTTT 105189 .......... .......... .......... .......... .......... .......... 27 CAGGATTTAG ACTGAGACTG GCTCCAGTTG ATGACACAC- TTGACATCCG TTGAAGATAT 105130 ||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ...GATTTAG ACTGAGACTG GCTCCAGTTG ATGACACACN TTGACATCCG TTGAAGATAT 84 CATTCTTTAG GCGTGGCCCA GCCCTTTTTG AATCTCAATG CTCTAACCTG TTTAGGAATT 105070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCTTTAG GCGTGGCCCA GCCCTTTTTG AATCTCAATG CTCTAACCTG TTTAGGAATT 144 GGAAGATATA TAGGTCATTT AACTTGCATT GTTTCAATGT TGTAAATACC ATGAACAAGT 105010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGATATA TAGGTCATTT AACTTGCATT GTTTCAATGT TGTAAATACC ATGAACAAGT 204 AAGTAGTCAT TGTTACAAGG TTCAGTTTAA ATTTCTCCTC CACGAGCGTT TAGCTGCAGC 104950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAGTCAT TGTTACAAGG TTCAGTTTAA ATTTCTCCTC CACGAGCGTT TAGCTGCAGC 264 ACACTCATGT GGACGCATCC CCATAGTTTT TTTGAAGACT ATATCATGTA ATATTGTTTG 104890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTCATGT GGACGCATCC CCATAGTTTT TTTGAAGACT ATATCATGTA ATATTGTTTG 324 TTATTATAAA GGAATTGTCT TTGGAAATAC CCC 104857 |||||||||| |||||||||| |||||||||| ||| TTATTATAAA GGAATTGTCT TTGGAAATAC CCC 357 hqPGS_C08SLm0006K11.1-_SGN-E217505- (105308 105286,105185 104857) ******************************************************************************** EST sequence 45 -strand 574 n (File: SGN-E244235-) 1 AGCATTCCAA AAAGATGGAA ACTTTCAGGT ATTAGATAAA TTTACGGAGA CTGGAACTTC 61 AATTGCTGGG AAGAAAGATG TAAGAATGTC AGAAAAGGAG GAAACATACG ATCTTAAGAA 121 GTTGTCTTCA GCAGATGAGA AAAGGAGTTG GGAAATTTCT AGAAGACCTG AAAATCGTGA 181 GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT ACCTGTTTAA 241 GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT ATGCTGGTGT 301 GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATT TTCTGTACAC AACGGATTGA 361 TCTTATCGTT CTATGATTCA ACTCTACACC AAATATTTGA ATTGTCTCTT ATCAAAATTT 421 CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT CTGTAAGAGT 481 GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA TCAATTGTAG 541 TTTGTTTTCT CAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 109295 to 107228): Exon 1 108685 108589 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 108588 108503 ( 86 n); Pd: 0.986 (s: 1.00), Pa: 0.933 (s: 1.00) Exon 2 108502 108046 ( 457 n); cDNA 98 554 ( 457 n); score: 0.993 Intron 2 108045 107866 ( 180 n); Pd: 0.000 (s: 0.98), Pa: 0.967 (s: 0) Exon 3 107865 107846 ( 20 n); cDNA 555 574 ( 20 n); score: 0.500 MATCH C08SLm0006K11.1- SGN-E244235- 0.995 574 1.000 C PGS_C08SLm0006K11.1-_SGN-E244235- (108685 108589,108502 108046,107865 107846) Alignment (genomic DNA sequence = upper lines): AGCATTCCAA AAAGATGGAA ACTTTCAGGT ATTAGATAAA TTTACGGAGA CTGGAACTTC 108626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTCCAA AAAGATGGAA ACTTTCAGGT ATTAGATAAA TTTACGGAGA CTGGAACTTC 60 AATTGCTGGG AAGAAAGATG TAAGAATGTC AGAAAAGGTA TAGACCGTGT GAAGCACTTA 108566 |||||||||| |||||||||| |||||||||| ||||||| AATTGCTGGG AAGAAAGATG TAAGAATGTC AGAAAAG... .......... .......... 97 TTGACAAATG TAAATGATTT AGAAGTTTAT CATTCCTATC TAATTTTTCA AATTGTCATG 108506 .......... .......... .......... .......... .......... .......... 97 AAGGAGGAAA CATACGATCT TAAGAAGTTG TCTTCAGCAG ATGAGAAAAG GAGTTGGGAA 108446 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAGGAAA CATACGATCT TAAGAAGTTG TCTTCAGCAG ATGAGAAAAG GAGTTGGGAA 154 ATTTCTAGAA GACCTGAAAA TCGTGAGCAC TTGAATGAAG ATGGAGAAGA TCCTACTTCA 108386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTAGAA GACCTGAAAA TCGTGAGCAC TTGAATGAAG ATGGAGAAGA TCCTACTTCA 214 AGGAAGCATT AATTTTACCT GTTTAAGGCT GAGTTTTGAC GGGTCTAATG CCAATCCTTG 108326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGCATT AATTTTACCT GTTTAAGGCT GAGTTTTGAC GGGTCTAATG CCAATCCTTG 274 GAAGGAGCAC AATCATATGC TGGTGTGTAA CTGTGAAAGT AGTTCACTGA CCAAACAATA 108266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAGCAC AATCATATGC TGGTGTGTAA CTGTGAAAGT AGTTCACTGA CCAAACAATA 334 AGCATCTTCT GTACACAACG GATTGATCTT ATCGTTCTAT GATTCAACTC TACACCAAAT 108206 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTTTCT GTACACAACG GATTGATCTT ATCGTTCTAT GATTCAACTC TACACCAAAT 394 ATCTGAATTG TCTCTTATCA AAATTTCGAC CAGGGCCTAC TATGTTTTTG CAGTTGTAGA 108146 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGAATTG TCTCTTATCA AAATTTCGAC CAGGGCCTAC TATGTTTTTG CAGTTGTAGA 454 ATAATGACTG CCTTATCTGT AAGAGTGTAC TGTGGGTAAC ACCCCTCATG CTGTTTCTCT 108086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATGACTG CCTTATCTGT AAGAGTGTAC TGTGGGTAAC ACCCCTCATG CTGTTTCTCT 514 TCCTGAGTTC TATGTATCAA TTGTAGTTTG TTTTCTCAGA ATTTTCACGT TGAGCAGAGG 108026 |||||||||| |||||||||| |||||||||| |||||||| | TCCTGAGTTC TATGTATCAA TTGTAGTTTG TTTTCTCAAA .......... .......... 554 TTCATGCTGT ATTGGCAGGT GTGAGCTCAT AAATTGTGTA CCATCCTGAA GAATTTTCGT 107966 .......... .......... .......... .......... .......... .......... 554 CAGTGCAGGC AGAACATTAT TTATCACAAT TTCATATTCT GAAATGAGGT TTTATGTGTG 107906 .......... .......... .......... .......... .......... .......... 554 ATACGTGATG GTGTTAATGA ACTAAAGTTG TTTGTGCTAG GTCAATAGAG AAGTTAGAAA 107846 || | | || | ||| .......... .......... .......... .......... AAAAAAAAAA AAAAAAAAAA 574 hqPGS_C08SLm0006K11.1-_SGN-E244235- (108685 108589,108502 108046) ******************************************************************************** EST sequence 116 +strand 655 n (File: SGN-E299397+) 1 GGTGAATCCA CAATTGATTC TGCTGATGCG AGGTTTGCTG TCATGGCAAT TATCAGCTTC 61 ATTCCGTATT TTAATTGGAT GAGTTGGGTT TTTGCGTGGT TGGATACTGG GAAACCACGT 121 TATGCAGTTT ATGCTCTTGT GTATTTGGCT CCATATTTAA GCAACAACCT GTCTCTATCT 181 CCTGAAGATA GCTTTCTACC CATTGCTAGC ATCCTCTTGT GCATCTTCCA CATTCAGCTG 241 GAAGCATTCC AAAAAGATGG AAACTTTCAG GTATTAGATA AATTTACGGA GACTGGAACT 301 TCAATTGCTG GGAAGAAAGA TGTAAGAATG TCAGAAAAGG AGGAAACATA CGATCTTAAG 361 AAGTTGTCTT CAGCAGATGA GAAAAGGAGT TGGGAAATTT CTAGAAGACC TGAAAATCGT 421 GAGCACTTGA ATGAAGATGG AGAAGATCCT ACTTCAAGGA AGCATTAATT TTACCTGTTT 481 AAGGCTGAGT TTTGACGGGT CTAATGCCAA TCCTTGGAAG GAGCACAATC ATATGCTGGT 541 GTGTAACTGT GAAAGTAGTT CACTGACCAA ACAATAAGCA TCTTCTGTAC ACAACGGATT 601 GATCTTATCG GTCTATGATT CAACTCTACA CCAAATATCT GAATTGTCTC TTATC Predicted gene structure (within gDNA segment 110939 to 107577): Exon 1 110339 110259 ( 81 n); cDNA 1 81 ( 81 n); score: 1.000 Intron 1 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 2 110100 110021 ( 80 n); cDNA 82 161 ( 80 n); score: 1.000 Intron 2 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 109386 109311 ( 76 n); cDNA 162 237 ( 76 n); score: 1.000 Intron 3 109310 108691 ( 620 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 108690 108589 ( 102 n); cDNA 238 339 ( 102 n); score: 1.000 Intron 4 108588 108503 ( 86 n); Pd: 0.986 (s: 1.00), Pa: 0.933 (s: 1.00) Exon 5 108502 108187 ( 316 n); cDNA 340 655 ( 316 n); score: 0.997 MATCH C08SLm0006K11.1- SGN-E299397+ 0.998 655 1.000 C PGS_C08SLm0006K11.1-_SGN-E299397+ (110339 110259,110100 110021,109386 109311,108690 108589,108502 108187) Alignment (genomic DNA sequence = upper lines): GGTGAATCCA CAATTGATTC TGCTGATGCG AGGTTTGCTG TCATGGCAAT TATCAGCTTC 110280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAATCCA CAATTGATTC TGCTGATGCG AGGTTTGCTG TCATGGCAAT TATCAGCTTC 60 ATTCCGTATT TTAATTGGAT GGTGAGATTT TTTCTTAATC ATCATTTGTT TTAAATTGGA 110220 |||||||||| |||||||||| | ATTCCGTATT TTAATTGGAT G......... .......... .......... .......... 81 ATATAGGCGT TTAGGGTTGA GGAGCGTGAA GAGTTGTTGT TGTTTGGAAC CATTTAGGGG 110160 .......... .......... .......... .......... .......... .......... 81 ATTCATATAG CTAAGTCCAA CTAACTTGGG ATTGATTGAT TTGCTGGTTT ACTTTGTAGA 110100 | .......... .......... .......... .......... .......... .........A 82 GTTGGGTTTT TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT GCTCTTGTGT 110040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGTTTT TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT GCTCTTGTGT 142 ATTTGGCTCC ATATTTAAGG TAAGGAGCTC TTAAAACTTT AGTTTTCTAG GTGATGTTTT 109980 |||||||||| ||||||||| ATTTGGCTCC ATATTTAAG. .......... .......... .......... .......... 161 AATATCATGT CTTGTCACCA CCCTGAACGT GCTTTAAGGA ATGTATTGAA GTTTGAACTA 109920 .......... .......... .......... .......... .......... .......... 161 GCAGAAAGAA AAAAAACACA TAGAGTTCTA TCTTGTCATC TATATTAACA AGGATCCTTC 109860 .......... .......... .......... .......... .......... .......... 161 ACGAGTTGTG GTAAATGAAG GATTGTACTC TATTTCCATG AATGACTGCT TATCCTTCTT 109800 .......... .......... .......... .......... .......... .......... 161 GATTTCCATG TTAAGCTTCC AACTCTGATA TGATTGTAAG ATTTAAAGTT TATTGTTGGA 109740 .......... .......... .......... .......... .......... .......... 161 AGACAATTAC CCCTAATTAT TGGACTAGAA AGACTTGTAA AATTTTAAAG TTCACTAACT 109680 .......... .......... .......... .......... .......... .......... 161 AGTCTCAGGG TTGGCACAAG GATTTTGACC AAGGAACTTG AAAATATGCA ATGAAATGGT 109620 .......... .......... .......... .......... .......... .......... 161 GCTAGTGAAG CTTGCCTGTG GGAACCCCTA CAGATTTTGA ACCACTCTAC AAAGACATCC 109560 .......... .......... .......... .......... .......... .......... 161 TTTGTTCTTT TTGTCCTTTC TTGGTAACAT CAGATTCTCT AGGAATTTGG TATACCCTGC 109500 .......... .......... .......... .......... .......... .......... 161 TGCTACAAGT TTAGGCAAAG GCATTATCAG CATTTTTTGA TGTTTAGTTG AGGCATTTTG 109440 .......... .......... .......... .......... .......... .......... 161 CCTTGATATT TATAACCAAG CATTTCAATC TTATGCTCTT TTATCGTATG CAGCAACAAC 109380 ||||||| .......... .......... .......... .......... .......... ...CAACAAC 168 CTGTCTCTAT CTCCTGAAGA TAGCTTTCTA CCCATTGCTA GCATCCTCTT GTGCATCTTC 109320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTCTAT CTCCTGAAGA TAGCTTTCTA CCCATTGCTA GCATCCTCTT GTGCATCTTC 228 CACATTCAGG TATATATTTA CAGTCTATCT GAAACTCTAT AAATTAATTA TGCTTGAGGT 109260 ||||||||| CACATTCAG. .......... .......... .......... .......... .......... 237 TCTCTGATAT AATCCTGGAA AGCGCAGCTC ACAGGGTTTA TTGCAAGCAG ACTAGAGCAT 109200 .......... .......... .......... .......... .......... .......... 237 CTAATCGTAG TTTTTGTTTC CGTTTTTGTT TCTTCCAATA GTGGGAGTTA TTGAATTCTA 109140 .......... .......... .......... .......... .......... .......... 237 TTTTTAGTAA ATTTTTCCTG TTTCCTTTTC TTTGTAGATT CTACTTAATA TATTGTTTAG 109080 .......... .......... .......... .......... .......... .......... 237 TAGATTTGGG ATTTGCTTTT CCTTGTTTTT ACTTATTTCA GTTGTTGATT CGGATAGCGA 109020 .......... .......... .......... .......... .......... .......... 237 TGTAATAGTT ATAAATACTT GCTGGCCTCA TAGTTAAGGG GGAGACGGAC TATTGCAAAT 108960 .......... .......... .......... .......... .......... .......... 237 ACAAACAAAA TTGTGATGTT AGAGATCTTA TAGTTAGGAT CGAGCTTGAA AACTACTTTA 108900 .......... .......... .......... .......... .......... .......... 237 AAGCTTGAAG TCTTCATGAT AATTCTTTTC TTCCTTTGAT GTGTATATCT TTGGTTATAT 108840 .......... .......... .......... .......... .......... .......... 237 CTTGTCATTC TATTTAGGGT CAGAGATCCT TTTTTTGCTC TTCAATTCCT TCAGTTATTT 108780 .......... .......... .......... .......... .......... .......... 237 GTATAATTCT ATTTCATTAT TTAGTTTATC ACTCCGCTTT GTGTATCCTG AATTGTATCA 108720 .......... .......... .......... .......... .......... .......... 237 TCCTCATTGA AAGTTTCATA TTGTTCCAGC TGGAAGCATT CCAAAAAGAT GGAAACTTTC 108660 | |||||||||| |||||||||| |||||||||| .......... .......... .........C TGGAAGCATT CCAAAAAGAT GGAAACTTTC 268 AGGTATTAGA TAAATTTACG GAGACTGGAA CTTCAATTGC TGGGAAGAAA GATGTAAGAA 108600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTATTAGA TAAATTTACG GAGACTGGAA CTTCAATTGC TGGGAAGAAA GATGTAAGAA 328 TGTCAGAAAA GGTATAGACC GTGTGAAGCA CTTATTGACA AATGTAAATG ATTTAGAAGT 108540 |||||||||| | TGTCAGAAAA G......... .......... .......... .......... .......... 339 TTATCATTCC TATCTAATTT TTCAAATTGT CATGAAGGAG GAAACATACG ATCTTAAGAA 108480 ||| |||||||||| |||||||||| .......... .......... .......... .......GAG GAAACATACG ATCTTAAGAA 362 GTTGTCTTCA GCAGATGAGA AAAGGAGTTG GGAAATTTCT AGAAGACCTG AAAATCGTGA 108420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCTTCA GCAGATGAGA AAAGGAGTTG GGAAATTTCT AGAAGACCTG AAAATCGTGA 422 GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT ACCTGTTTAA 108360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT ACCTGTTTAA 482 GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT ATGCTGGTGT 108300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT ATGCTGGTGT 542 GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATC TTCTGTACAC AACGGATTGA 108240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATC TTCTGTACAC AACGGATTGA 602 TCTTATCGTT CTATGATTCA ACTCTACACC AAATATCTGA ATTGTCTCTT ATC 108187 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTTATCGGT CTATGATTCA ACTCTACACC AAATATCTGA ATTGTCTCTT ATC 655 hqPGS_C08SLm0006K11.1-_SGN-E299397+ (110339 110259,110100 110021,109386 109311,108690 108589,108502 108187) ******************************************************************************** EST sequence 125 +strand 678 n (File: SGN-E320610+) 1 TGCCGTCGCC GTTCTCTATC TCCGCCAATG AAATCTCTCA CTTGCACTGC AGCTCTACTT 61 CTTTCTACTT CTCCGCCGTC TTTACGATCT TCTCTCTTAC CAAGTCTTCG ACCTCTTCTT 121 TATCGAGCTC GCCTCCGCAA CAAGCTTAAT CTGAGAAGAT TGGGAAATGG AACTTGCCGG 181 GCAGAGTTTG CAAACGATGT GCCTTACGCC GCTGCTATTG GTGCTTGCAT TTTGAGCTCG 241 TGGGTTTTCC CGACTACTTA CACGGAGGAG GACGATGGTG AATCCACAAT TGATTCTGCT 301 GATGGGAGGT TTGCTGTGAT GGCAATTATC AGCTTCATTC CGTATTTTAA TTGGATGAGT 361 TGGGTGTTTG CGTGGATGGA TACTGGGAAA CCACGGTATG CAGTGTATGC TCGTGTGTAT 421 TTGGCTCCAT ATTTAAGCAA CAACCTGTCT CTTTCTCCTG AAGATAGCTT TCTACCCATT 481 GCTAGCATCC TCTTGTGCAT CTTCCACATT CGGCTGGAAG CATTCCAAAG AGATGGAAAC 541 TTGCAGGTAT TAGATAAATT TACGGAGACT GGAACTTCGA TTGCTGGGAA GAGAGATGTA 601 AGAATGTCAG AGAAGGAGGA AACATACGAT CTTAAGAGAG TGTCTTCAGC AGATGAGAAA 661 ATGAGTTGGG AAATTTCT Predicted gene structure (within gDNA segment 111328 to 107830): Exon 1 110728 110576 ( 153 n); cDNA 1 153 ( 153 n); score: 0.993 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 154 357 ( 204 n); score: 0.990 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 0.98), Pa: 0.910 (s: 0.92) Exon 3 110100 110021 ( 80 n); cDNA 358 437 ( 80 n); score: 0.938 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 0.94), Pa: 0.984 (s: 0.98) Exon 4 109386 109311 ( 76 n); cDNA 438 513 ( 76 n); score: 0.974 Intron 4 109310 108691 ( 620 n); Pd: 0.998 (s: 0.98), Pa: 0.974 (s: 0.96) Exon 5 108690 108589 ( 102 n); cDNA 514 615 ( 102 n); score: 0.951 Intron 5 108588 108503 ( 86 n); Pd: 0.986 (s: 0.94), Pa: 0.933 (s: 0.92) Exon 6 108502 108440 ( 63 n); cDNA 616 678 ( 63 n); score: 0.937 MATCH C08SLm0006K11.1- SGN-E320610+ 0.972 678 1.000 C PGS_C08SLm0006K11.1-_SGN-E320610+ (110728 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 108440) Alignment (genomic DNA sequence = upper lines): TGCCGTCGCC GTTCTCTATC TCCGCCAATG AAATCTCTCA CTTCCACTGC AGCTCTACTT 110669 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGCCGTCGCC GTTCTCTATC TCCGCCAATG AAATCTCTCA CTTGCACTGC AGCTCTACTT 60 CTTTCTACTT CTCCGCCGTC TTTACGATCT TCTCTCTTAC CAAGTCTTCG ACCTCTTCTT 110609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTACTT CTCCGCCGTC TTTACGATCT TCTCTCTTAC CAAGTCTTCG ACCTCTTCTT 120 TATCGAGCTC GCCTCCGCAA CAAGCTTAAT CTGGTAATTA ACTTAATTAC TACGTGTTCT 110549 |||||||||| |||||||||| |||||||||| ||| TATCGAGCTC GCCTCCGCAA CAAGCTTAAT CTG....... .......... .......... 153 AATCTCATTT TAACTTAAAA ACCTACCTAC ATGTACTGGA ATCAAAATGA GTTCAATAGA 110489 .......... .......... .......... .......... .......... .......... 153 GCTGAAATAG GTTATTGATT TTGTAGAGAA GATTGGGAAA TGGAACTTGC CGGGCAGAGT 110429 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGAA GATTGGGAAA TGGAACTTGC CGGGCAGAGT 187 TTGCAAACGA TGTGCCTTAC GCCGCTGCTA TTGGTGCTTG CATTTTGAGC TCGTGGGTTT 110369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAACGA TGTGCCTTAC GCCGCTGCTA TTGGTGCTTG CATTTTGAGC TCGTGGGTTT 247 TCCCGACTAC TTACACGGAG GAGGACGATG GTGAATCCAC AATTGATTCT GCTGATGCGA 110309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TCCCGACTAC TTACACGGAG GAGGACGATG GTGAATCCAC AATTGATTCT GCTGATGGGA 307 GGTTTGCTGT CATGGCAATT ATCAGCTTCA TTCCGTATTT TAATTGGATG GTGAGATTTT 110249 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTTTGCTGT GATGGCAATT ATCAGCTTCA TTCCGTATTT TAATTGGATG .......... 357 TTCTTAATCA TCATTTGTTT TAAATTGGAA TATAGGCGTT TAGGGTTGAG GAGCGTGAAG 110189 .......... .......... .......... .......... .......... .......... 357 AGTTGTTGTT GTTTGGAACC ATTTAGGGGA TTCATATAGC TAAGTCCAAC TAACTTGGGA 110129 .......... .......... .......... .......... .......... .......... 357 TTGATTGATT TGCTGGTTTA CTTTGTAGAG TTGGGTTTTT GCGTGGTTGG ATACTGGGAA 110069 || |||||| ||| |||||| ||| |||||||||| .......... .......... ........AG TTGGGTGTTT GCGTGGATGG ATACTGGGAA 389 ACCACGTTAT GCAGTTTATG CTCTTGTGTA TTTGGCTCCA TATTTAAGGT AAGGAGCTCT 110009 |||||| ||| ||||| |||| ||| |||||| |||||||||| |||||||| ACCACGGTAT GCAGTGTATG CTCGTGTGTA TTTGGCTCCA TATTTAAG.. .......... 437 TAAAACTTTA GTTTTCTAGG TGATGTTTTA ATATCATGTC TTGTCACCAC CCTGAACGTG 109949 .......... .......... .......... .......... .......... .......... 437 CTTTAAGGAA TGTATTGAAG TTTGAACTAG CAGAAAGAAA AAAAACACAT AGAGTTCTAT 109889 .......... .......... .......... .......... .......... .......... 437 CTTGTCATCT ATATTAACAA GGATCCTTCA CGAGTTGTGG TAAATGAAGG ATTGTACTCT 109829 .......... .......... .......... .......... .......... .......... 437 ATTTCCATGA ATGACTGCTT ATCCTTCTTG ATTTCCATGT TAAGCTTCCA ACTCTGATAT 109769 .......... .......... .......... .......... .......... .......... 437 GATTGTAAGA TTTAAAGTTT ATTGTTGGAA GACAATTACC CCTAATTATT GGACTAGAAA 109709 .......... .......... .......... .......... .......... .......... 437 GACTTGTAAA ATTTTAAAGT TCACTAACTA GTCTCAGGGT TGGCACAAGG ATTTTGACCA 109649 .......... .......... .......... .......... .......... .......... 437 AGGAACTTGA AAATATGCAA TGAAATGGTG CTAGTGAAGC TTGCCTGTGG GAACCCCTAC 109589 .......... .......... .......... .......... .......... .......... 437 AGATTTTGAA CCACTCTACA AAGACATCCT TTGTTCTTTT TGTCCTTTCT TGGTAACATC 109529 .......... .......... .......... .......... .......... .......... 437 AGATTCTCTA GGAATTTGGT ATACCCTGCT GCTACAAGTT TAGGCAAAGG CATTATCAGC 109469 .......... .......... .......... .......... .......... .......... 437 ATTTTTTGAT GTTTAGTTGA GGCATTTTGC CTTGATATTT ATAACCAAGC ATTTCAATCT 109409 .......... .......... .......... .......... .......... .......... 437 TATGCTCTTT TATCGTATGC AGCAACAACC TGTCTCTATC TCCTGAAGAT AGCTTTCTAC 109349 |||||||| ||||||| || |||||||||| |||||||||| .......... .......... ..CAACAACC TGTCTCTTTC TCCTGAAGAT AGCTTTCTAC 475 CCATTGCTAG CATCCTCTTG TGCATCTTCC ACATTCAGGT ATATATTTAC AGTCTATCTG 109289 |||||||||| |||||||||| |||||||||| |||||| | CCATTGCTAG CATCCTCTTG TGCATCTTCC ACATTCGG.. .......... .......... 513 AAACTCTATA AATTAATTAT GCTTGAGGTT CTCTGATATA ATCCTGGAAA GCGCAGCTCA 109229 .......... .......... .......... .......... .......... .......... 513 CAGGGTTTAT TGCAAGCAGA CTAGAGCATC TAATCGTAGT TTTTGTTTCC GTTTTTGTTT 109169 .......... .......... .......... .......... .......... .......... 513 CTTCCAATAG TGGGAGTTAT TGAATTCTAT TTTTAGTAAA TTTTTCCTGT TTCCTTTTCT 109109 .......... .......... .......... .......... .......... .......... 513 TTGTAGATTC TACTTAATAT ATTGTTTAGT AGATTTGGGA TTTGCTTTTC CTTGTTTTTA 109049 .......... .......... .......... .......... .......... .......... 513 CTTATTTCAG TTGTTGATTC GGATAGCGAT GTAATAGTTA TAAATACTTG CTGGCCTCAT 108989 .......... .......... .......... .......... .......... .......... 513 AGTTAAGGGG GAGACGGACT ATTGCAAATA CAAACAAAAT TGTGATGTTA GAGATCTTAT 108929 .......... .......... .......... .......... .......... .......... 513 AGTTAGGATC GAGCTTGAAA ACTACTTTAA AGCTTGAAGT CTTCATGATA ATTCTTTTCT 108869 .......... .......... .......... .......... .......... .......... 513 TCCTTTGATG TGTATATCTT TGGTTATATC TTGTCATTCT ATTTAGGGTC AGAGATCCTT 108809 .......... .......... .......... .......... .......... .......... 513 TTTTTGCTCT TCAATTCCTT CAGTTATTTG TATAATTCTA TTTCATTATT TAGTTTATCA 108749 .......... .......... .......... .......... .......... .......... 513 CTCCGCTTTG TGTATCCTGA ATTGTATCAT CCTCATTGAA AGTTTCATAT TGTTCCAGCT 108689 || .......... .......... .......... .......... .......... ........CT 515 GGAAGCATTC CAAAAAGATG GAAACTTTCA GGTATTAGAT AAATTTACGG AGACTGGAAC 108629 |||||||||| |||| ||||| ||||||| || |||||||||| |||||||||| |||||||||| GGAAGCATTC CAAAGAGATG GAAACTTGCA GGTATTAGAT AAATTTACGG AGACTGGAAC 575 TTCAATTGCT GGGAAGAAAG ATGTAAGAAT GTCAGAAAAG GTATAGACCG TGTGAAGCAC 108569 ||| |||||| ||||||| || |||||||||| |||||| ||| TTCGATTGCT GGGAAGAGAG ATGTAAGAAT GTCAGAGAAG .......... .......... 615 TTATTGACAA ATGTAAATGA TTTAGAAGTT TATCATTCCT ATCTAATTTT TCAAATTGTC 108509 .......... .......... .......... .......... .......... .......... 615 ATGAAGGAGG AAACATACGA TCTTAAGAAG TTGTCTTCAG CAGATGAGAA AAGGAGTTGG 108449 |||| |||||||||| |||||||| ||||||||| |||||||||| || ||||||| ......GAGG AAACATACGA TCTTAAGAGA GTGTCTTCAG CAGATGAGAA AATGAGTTGG 669 GAAATTTCT 108440 ||||||||| GAAATTTCT 678 hqPGS_C08SLm0006K11.1-_SGN-E320610+ (110728 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 108440) ******************************************************************************** EST sequence 86 -strand 278 n (File: SGN-E391675-) 1 ATCAAAATTT CGACCAGGGC ATAGTTTCTT TTTGCAGTTG TGGAATAATG ACTGCCTTAT 61 CTGTAAGAGT GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA 121 TCAATTGTAG TTTGTTTTCT CAGAATTTTC ACGTTGAGCA GAGGTTCATG CTGTATTGGC 181 AGGTGTGAGC TCATAAATTG TGTACCATCC TGAAGAATTT TCGTCAGTGC AGGCAGAACA 241 TTATTTATCA CAATTTCATA TTCTGAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 109177 to 107222): Exon 1 108189 107922 ( 268 n); cDNA 1 268 ( 268 n); score: 0.981 PPA cDNA 269 278 MATCH C08SLm0006K11.1- SGN-E391675- 0.981 268 0.964 C PGS_C08SLm0006K11.1-_SGN-E391675- (108189 107922) Alignment (genomic DNA sequence = upper lines): ATCAAAATTT CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT 108130 |||||||||| |||||||||| || | | || |||||||||| | |||||||| |||||||||| ATCAAAATTT CGACCAGGGC ATAGTTTCTT TTTGCAGTTG TGGAATAATG ACTGCCTTAT 60 CTGTAAGAGT GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA 108070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTAAGAGT GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA 120 TCAATTGTAG TTTGTTTTCT CAGAATTTTC ACGTTGAGCA GAGGTTCATG CTGTATTGGC 108010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTGTAG TTTGTTTTCT CAGAATTTTC ACGTTGAGCA GAGGTTCATG CTGTATTGGC 180 AGGTGTGAGC TCATAAATTG TGTACCATCC TGAAGAATTT TCGTCAGTGC AGGCAGAACA 107950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGTGAGC TCATAAATTG TGTACCATCC TGAAGAATTT TCGTCAGTGC AGGCAGAACA 240 TTATTTATCA CAATTTCATA TTCTGAAA 107922 |||||||||| |||||||||| |||||||| TTATTTATCA CAATTTCATA TTCTGAAA 268 hqPGS_C08SLm0006K11.1-_SGN-E391675- (108189 107922) ******************************************************************************** EST sequence 114 +strand 550 n (File: SGN-E268597+) 1 AGATGCTGCC GTCGCCGTTC TCTATCTCCG CCAATGAAAT CTCTCACTGC CACTGCAGGT 61 CTACTTCTTT CTACTTCTCC GCCGTCTTTA CGATCTTCTC TCTTACCAAG TCTTCGACCT 121 CTTCTTTATC GAGCTCGCCT CCGCAACAAG CTTAATCTGA GAAGATTGGG AAATGGAACT 181 TGCCGGGCAG AGTTTGCAAA CGATGTGCCT TACGCCGCTG CTATTGGTGC TTGCATTTTG 241 AGCTCGTGGG TTTTCCCGAC TACTTACACG GAGGAGGACG ATGGTGAATC CACAATTGAT 301 TCTGCTGATG CGAGGTTTGC TGTCATGGCA ATTATCAGCT TCATTCCGTA TTTTAATTGG 361 ATGAGTTGGG TTTTTGCGTG GTTGGATACT GGGAAACCAC GTTATGCAGT TTATGCTCTT 421 GTGTATTTGG CTCCATATTT AAGCAACAAC CTGTCTCTAT CTCCTGAAGA TAGCTTTCTA 481 CCCATTGCTA GCATCCTCTT GTGCATCTTC CACATTCAGC TGGAAGCATT CCAAAAAGAT 541 GGAAACTTTC Predicted gene structure (within gDNA segment 111334 to 108050): Exon 1 110734 110576 ( 159 n); cDNA 1 159 ( 159 n); score: 0.987 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 160 363 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 364 443 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 109386 109311 ( 76 n); cDNA 444 519 ( 76 n); score: 1.000 Intron 4 109310 108691 ( 620 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 0) Exon 5 108690 108660 ( 31 n); cDNA 520 550 ( 31 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E268597+ 0.996 550 1.000 C PGS_C08SLm0006K11.1-_SGN-E268597+ (110734 110576,110462 110259,110100 110021,109386 109311,108690 108660) Alignment (genomic DNA sequence = upper lines): AGATGCTGCC GTCGCCGTTC TCTATCTCCG CCAATGAAAT CTCTCACTTC CACTGCAGCT 110675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | AGATGCTGCC GTCGCCGTTC TCTATCTCCG CCAATGAAAT CTCTCACTGC CACTGCAGGT 60 CTACTTCTTT CTACTTCTCC GCCGTCTTTA CGATCTTCTC TCTTACCAAG TCTTCGACCT 110615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTTCTTT CTACTTCTCC GCCGTCTTTA CGATCTTCTC TCTTACCAAG TCTTCGACCT 120 CTTCTTTATC GAGCTCGCCT CCGCAACAAG CTTAATCTGG TAATTAACTT AATTACTACG 110555 |||||||||| |||||||||| |||||||||| ||||||||| CTTCTTTATC GAGCTCGCCT CCGCAACAAG CTTAATCTG. .......... .......... 159 TGTTCTAATC TCATTTTAAC TTAAAAACCT ACCTACATGT ACTGGAATCA AAATGAGTTC 110495 .......... .......... .......... .......... .......... .......... 159 AATAGAGCTG AAATAGGTTA TTGATTTTGT AGAGAAGATT GGGAAATGGA ACTTGCCGGG 110435 |||||||| |||||||||| |||||||||| .......... .......... .......... ..AGAAGATT GGGAAATGGA ACTTGCCGGG 187 CAGAGTTTGC AAACGATGTG CCTTACGCCG CTGCTATTGG TGCTTGCATT TTGAGCTCGT 110375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGTTTGC AAACGATGTG CCTTACGCCG CTGCTATTGG TGCTTGCATT TTGAGCTCGT 247 GGGTTTTCCC GACTACTTAC ACGGAGGAGG ACGATGGTGA ATCCACAATT GATTCTGCTG 110315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTTTCCC GACTACTTAC ACGGAGGAGG ACGATGGTGA ATCCACAATT GATTCTGCTG 307 ATGCGAGGTT TGCTGTCATG GCAATTATCA GCTTCATTCC GTATTTTAAT TGGATGGTGA 110255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATGCGAGGTT TGCTGTCATG GCAATTATCA GCTTCATTCC GTATTTTAAT TGGATG.... 363 GATTTTTTCT TAATCATCAT TTGTTTTAAA TTGGAATATA GGCGTTTAGG GTTGAGGAGC 110195 .......... .......... .......... .......... .......... .......... 363 GTGAAGAGTT GTTGTTGTTT GGAACCATTT AGGGGATTCA TATAGCTAAG TCCAACTAAC 110135 .......... .......... .......... .......... .......... .......... 363 TTGGGATTGA TTGATTTGCT GGTTTACTTT GTAGAGTTGG GTTTTTGCGT GGTTGGATAC 110075 |||||| |||||||||| |||||||||| .......... .......... .......... ....AGTTGG GTTTTTGCGT GGTTGGATAC 389 TGGGAAACCA CGTTATGCAG TTTATGCTCT TGTGTATTTG GCTCCATATT TAAGGTAAGG 110015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGGAAACCA CGTTATGCAG TTTATGCTCT TGTGTATTTG GCTCCATATT TAAG...... 443 AGCTCTTAAA ACTTTAGTTT TCTAGGTGAT GTTTTAATAT CATGTCTTGT CACCACCCTG 109955 .......... .......... .......... .......... .......... .......... 443 AACGTGCTTT AAGGAATGTA TTGAAGTTTG AACTAGCAGA AAGAAAAAAA ACACATAGAG 109895 .......... .......... .......... .......... .......... .......... 443 TTCTATCTTG TCATCTATAT TAACAAGGAT CCTTCACGAG TTGTGGTAAA TGAAGGATTG 109835 .......... .......... .......... .......... .......... .......... 443 TACTCTATTT CCATGAATGA CTGCTTATCC TTCTTGATTT CCATGTTAAG CTTCCAACTC 109775 .......... .......... .......... .......... .......... .......... 443 TGATATGATT GTAAGATTTA AAGTTTATTG TTGGAAGACA ATTACCCCTA ATTATTGGAC 109715 .......... .......... .......... .......... .......... .......... 443 TAGAAAGACT TGTAAAATTT TAAAGTTCAC TAACTAGTCT CAGGGTTGGC ACAAGGATTT 109655 .......... .......... .......... .......... .......... .......... 443 TGACCAAGGA ACTTGAAAAT ATGCAATGAA ATGGTGCTAG TGAAGCTTGC CTGTGGGAAC 109595 .......... .......... .......... .......... .......... .......... 443 CCCTACAGAT TTTGAACCAC TCTACAAAGA CATCCTTTGT TCTTTTTGTC CTTTCTTGGT 109535 .......... .......... .......... .......... .......... .......... 443 AACATCAGAT TCTCTAGGAA TTTGGTATAC CCTGCTGCTA CAAGTTTAGG CAAAGGCATT 109475 .......... .......... .......... .......... .......... .......... 443 ATCAGCATTT TTTGATGTTT AGTTGAGGCA TTTTGCCTTG ATATTTATAA CCAAGCATTT 109415 .......... .......... .......... .......... .......... .......... 443 CAATCTTATG CTCTTTTATC GTATGCAGCA ACAACCTGTC TCTATCTCCT GAAGATAGCT 109355 || |||||||||| |||||||||| |||||||||| .......... .......... ........CA ACAACCTGTC TCTATCTCCT GAAGATAGCT 475 TTCTACCCAT TGCTAGCATC CTCTTGTGCA TCTTCCACAT TCAGGTATAT ATTTACAGTC 109295 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTCTACCCAT TGCTAGCATC CTCTTGTGCA TCTTCCACAT TCAG...... .......... 519 TATCTGAAAC TCTATAAATT AATTATGCTT GAGGTTCTCT GATATAATCC TGGAAAGCGC 109235 .......... .......... .......... .......... .......... .......... 519 AGCTCACAGG GTTTATTGCA AGCAGACTAG AGCATCTAAT CGTAGTTTTT GTTTCCGTTT 109175 .......... .......... .......... .......... .......... .......... 519 TTGTTTCTTC CAATAGTGGG AGTTATTGAA TTCTATTTTT AGTAAATTTT TCCTGTTTCC 109115 .......... .......... .......... .......... .......... .......... 519 TTTTCTTTGT AGATTCTACT TAATATATTG TTTAGTAGAT TTGGGATTTG CTTTTCCTTG 109055 .......... .......... .......... .......... .......... .......... 519 TTTTTACTTA TTTCAGTTGT TGATTCGGAT AGCGATGTAA TAGTTATAAA TACTTGCTGG 108995 .......... .......... .......... .......... .......... .......... 519 CCTCATAGTT AAGGGGGAGA CGGACTATTG CAAATACAAA CAAAATTGTG ATGTTAGAGA 108935 .......... .......... .......... .......... .......... .......... 519 TCTTATAGTT AGGATCGAGC TTGAAAACTA CTTTAAAGCT TGAAGTCTTC ATGATAATTC 108875 .......... .......... .......... .......... .......... .......... 519 TTTTCTTCCT TTGATGTGTA TATCTTTGGT TATATCTTGT CATTCTATTT AGGGTCAGAG 108815 .......... .......... .......... .......... .......... .......... 519 ATCCTTTTTT TGCTCTTCAA TTCCTTCAGT TATTTGTATA ATTCTATTTC ATTATTTAGT 108755 .......... .......... .......... .......... .......... .......... 519 TTATCACTCC GCTTTGTGTA TCCTGAATTG TATCATCCTC ATTGAAAGTT TCATATTGTT 108695 .......... .......... .......... .......... .......... .......... 519 CCAGCTGGAA GCATTCCAAA AAGATGGAAA CTTTC 108660 |||||| |||||||||| |||||||||| ||||| ....CTGGAA GCATTCCAAA AAGATGGAAA CTTTC 550 hqPGS_C08SLm0006K11.1-_SGN-E268597+ (110734 110576,110462 110259,110100 110021,109386 109311,108690 108660) ******************************************************************************** EST sequence 140 +strand 543 n (File: SGN-E245392+) 1 TGCTGCCGTC GCCGTTCTCT ATCTCCGCCT ATGAAATCTC TCACGTGCAC TGCAGCTCTG 61 CTTGTTTCTA CTTCTCCGCC GTCTTTACGA TCTTCTCTCT TACCAAGTCT TCGACCTCTT 121 CTTTATCGAG CTCGCCTCCG CAACAAGCTT AATCTGAGAA GATTGGGAAA TGGAACTTGC 181 CGGGCAGAGT TTGCAAACGA TGTGCCTTAC GCCGCTGCTA TTGGTGCTTG CATTTTGAGC 241 TCGTGGGTTT TCCCGACTAC TTACACGGAG GAGGACGATG GTGAATCCAC AATTGATTCT 301 GCTGATGCGA GGTTTGCTGT CATGGCAATT ATCAGCTTCA TTCCGTATTT TAATTGGATG 361 AGTTGGGTTT TTGCGTGGTT GGATACTGGG AAACCACGTT ATGCAGTTTA TGCTCTTGTG 421 TATTTGGCTC CATATTTAAG CAACAACCTG TCTCTATCTC CTGAAGATAG CTTTCTACCC 481 ATTGCTAGCA TCCTCTTGGG CATCTTCCAC ATTCAGCTGG AAGCATTCCA AAAAGATGGA 541 AAC Predicted gene structure (within gDNA segment 111907 to 108054): Exon 1 110731 110576 ( 156 n); cDNA 1 156 ( 156 n); score: 0.968 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 157 360 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 361 440 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 109386 109311 ( 76 n); cDNA 441 516 ( 76 n); score: 0.987 Intron 4 109310 108691 ( 620 n); Pd: 0.998 (s: 0.98), Pa: 0.974 (s: 0) Exon 5 108690 108664 ( 27 n); cDNA 517 543 ( 27 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E245392+ 0.988 543 1.000 C PGS_C08SLm0006K11.1-_SGN-E245392+ (110731 110576,110462 110259,110100 110021,109386 109311,108690 108664) Alignment (genomic DNA sequence = upper lines): TGCTGCCGTC GCCGTTCTCT ATCTCCGCCA ATGAAATCTC TCACTTCCAC TGCAGCTCTA 110672 |||||||||| |||||||||| ||||||||| |||||||||| |||| | ||| ||||||||| TGCTGCCGTC GCCGTTCTCT ATCTCCGCCT ATGAAATCTC TCACGTGCAC TGCAGCTCTG 60 CTTCTTTCTA CTTCTCCGCC GTCTTTACGA TCTTCTCTCT TACCAAGTCT TCGACCTCTT 110612 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTTCTA CTTCTCCGCC GTCTTTACGA TCTTCTCTCT TACCAAGTCT TCGACCTCTT 120 CTTTATCGAG CTCGCCTCCG CAACAAGCTT AATCTGGTAA TTAACTTAAT TACTACGTGT 110552 |||||||||| |||||||||| |||||||||| |||||| CTTTATCGAG CTCGCCTCCG CAACAAGCTT AATCTG.... .......... .......... 156 TCTAATCTCA TTTTAACTTA AAAACCTACC TACATGTACT GGAATCAAAA TGAGTTCAAT 110492 .......... .......... .......... .......... .......... .......... 156 AGAGCTGAAA TAGGTTATTG ATTTTGTAGA GAAGATTGGG AAATGGAACT TGCCGGGCAG 110432 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GAAGATTGGG AAATGGAACT TGCCGGGCAG 187 AGTTTGCAAA CGATGTGCCT TACGCCGCTG CTATTGGTGC TTGCATTTTG AGCTCGTGGG 110372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGCAAA CGATGTGCCT TACGCCGCTG CTATTGGTGC TTGCATTTTG AGCTCGTGGG 247 TTTTCCCGAC TACTTACACG GAGGAGGACG ATGGTGAATC CACAATTGAT TCTGCTGATG 110312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCCGAC TACTTACACG GAGGAGGACG ATGGTGAATC CACAATTGAT TCTGCTGATG 307 CGAGGTTTGC TGTCATGGCA ATTATCAGCT TCATTCCGTA TTTTAATTGG ATGGTGAGAT 110252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CGAGGTTTGC TGTCATGGCA ATTATCAGCT TCATTCCGTA TTTTAATTGG ATG....... 360 TTTTTCTTAA TCATCATTTG TTTTAAATTG GAATATAGGC GTTTAGGGTT GAGGAGCGTG 110192 .......... .......... .......... .......... .......... .......... 360 AAGAGTTGTT GTTGTTTGGA ACCATTTAGG GGATTCATAT AGCTAAGTCC AACTAACTTG 110132 .......... .......... .......... .......... .......... .......... 360 GGATTGATTG ATTTGCTGGT TTACTTTGTA GAGTTGGGTT TTTGCGTGGT TGGATACTGG 110072 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGTTGGGTT TTTGCGTGGT TGGATACTGG 389 GAAACCACGT TATGCAGTTT ATGCTCTTGT GTATTTGGCT CCATATTTAA GGTAAGGAGC 110012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GAAACCACGT TATGCAGTTT ATGCTCTTGT GTATTTGGCT CCATATTTAA G......... 440 TCTTAAAACT TTAGTTTTCT AGGTGATGTT TTAATATCAT GTCTTGTCAC CACCCTGAAC 109952 .......... .......... .......... .......... .......... .......... 440 GTGCTTTAAG GAATGTATTG AAGTTTGAAC TAGCAGAAAG AAAAAAAACA CATAGAGTTC 109892 .......... .......... .......... .......... .......... .......... 440 TATCTTGTCA TCTATATTAA CAAGGATCCT TCACGAGTTG TGGTAAATGA AGGATTGTAC 109832 .......... .......... .......... .......... .......... .......... 440 TCTATTTCCA TGAATGACTG CTTATCCTTC TTGATTTCCA TGTTAAGCTT CCAACTCTGA 109772 .......... .......... .......... .......... .......... .......... 440 TATGATTGTA AGATTTAAAG TTTATTGTTG GAAGACAATT ACCCCTAATT ATTGGACTAG 109712 .......... .......... .......... .......... .......... .......... 440 AAAGACTTGT AAAATTTTAA AGTTCACTAA CTAGTCTCAG GGTTGGCACA AGGATTTTGA 109652 .......... .......... .......... .......... .......... .......... 440 CCAAGGAACT TGAAAATATG CAATGAAATG GTGCTAGTGA AGCTTGCCTG TGGGAACCCC 109592 .......... .......... .......... .......... .......... .......... 440 TACAGATTTT GAACCACTCT ACAAAGACAT CCTTTGTTCT TTTTGTCCTT TCTTGGTAAC 109532 .......... .......... .......... .......... .......... .......... 440 ATCAGATTCT CTAGGAATTT GGTATACCCT GCTGCTACAA GTTTAGGCAA AGGCATTATC 109472 .......... .......... .......... .......... .......... .......... 440 AGCATTTTTT GATGTTTAGT TGAGGCATTT TGCCTTGATA TTTATAACCA AGCATTTCAA 109412 .......... .......... .......... .......... .......... .......... 440 TCTTATGCTC TTTTATCGTA TGCAGCAACA ACCTGTCTCT ATCTCCTGAA GATAGCTTTC 109352 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CAACA ACCTGTCTCT ATCTCCTGAA GATAGCTTTC 475 TACCCATTGC TAGCATCCTC TTGTGCATCT TCCACATTCA GGTATATATT TACAGTCTAT 109292 |||||||||| |||||||||| ||| |||||| |||||||||| | TACCCATTGC TAGCATCCTC TTGGGCATCT TCCACATTCA G......... .......... 516 CTGAAACTCT ATAAATTAAT TATGCTTGAG GTTCTCTGAT ATAATCCTGG AAAGCGCAGC 109232 .......... .......... .......... .......... .......... .......... 516 TCACAGGGTT TATTGCAAGC AGACTAGAGC ATCTAATCGT AGTTTTTGTT TCCGTTTTTG 109172 .......... .......... .......... .......... .......... .......... 516 TTTCTTCCAA TAGTGGGAGT TATTGAATTC TATTTTTAGT AAATTTTTCC TGTTTCCTTT 109112 .......... .......... .......... .......... .......... .......... 516 TCTTTGTAGA TTCTACTTAA TATATTGTTT AGTAGATTTG GGATTTGCTT TTCCTTGTTT 109052 .......... .......... .......... .......... .......... .......... 516 TTACTTATTT CAGTTGTTGA TTCGGATAGC GATGTAATAG TTATAAATAC TTGCTGGCCT 108992 .......... .......... .......... .......... .......... .......... 516 CATAGTTAAG GGGGAGACGG ACTATTGCAA ATACAAACAA AATTGTGATG TTAGAGATCT 108932 .......... .......... .......... .......... .......... .......... 516 TATAGTTAGG ATCGAGCTTG AAAACTACTT TAAAGCTTGA AGTCTTCATG ATAATTCTTT 108872 .......... .......... .......... .......... .......... .......... 516 TCTTCCTTTG ATGTGTATAT CTTTGGTTAT ATCTTGTCAT TCTATTTAGG GTCAGAGATC 108812 .......... .......... .......... .......... .......... .......... 516 CTTTTTTTGC TCTTCAATTC CTTCAGTTAT TTGTATAATT CTATTTCATT ATTTAGTTTA 108752 .......... .......... .......... .......... .......... .......... 516 TCACTCCGCT TTGTGTATCC TGAATTGTAT CATCCTCATT GAAAGTTTCA TATTGTTCCA 108692 .......... .......... .......... .......... .......... .......... 516 GCTGGAAGCA TTCCAAAAAG ATGGAAAC 108664 ||||||||| |||||||||| |||||||| .CTGGAAGCA TTCCAAAAAG ATGGAAAC 543 hqPGS_C08SLm0006K11.1-_SGN-E245392+ (110731 110576,110462 110259,110100 110021,109386 109311,108690 108664) ******************************************************************************** EST sequence 46 -strand 309 n (File: SGN-E244305-) 1 AAAATCGTGA GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT 61 ACCTGTTTAA GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT 121 ATGCTGGTGT GTAACTGTGA AAGTAGTTCA CTGACCCAAC AATAAGCATT TTCTGTACAC 181 AACGGATTGA TCTTATCGTT CTATGATTCA ACTCTACACC AAATATTTGA ATTGTCTCTT 241 ATCAAAATTT CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT 301 CTGTAAAAG Predicted gene structure (within gDNA segment 109039 to 107494): Exon 1 108429 108121 ( 309 n); cDNA 1 309 ( 309 n); score: 0.987 MATCH C08SLm0006K11.1- SGN-E244305- 0.987 309 1.000 C PGS_C08SLm0006K11.1-_SGN-E244305- (108429 108121) Alignment (genomic DNA sequence = upper lines): AAAATCGTGA GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT 108370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCGTGA GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT 60 ACCTGTTTAA GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT 108310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGTTTAA GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT 120 ATGCTGGTGT GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATC TTCTGTACAC 108250 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| ATGCTGGTGT GTAACTGTGA AAGTAGTTCA CTGACCCAAC AATAAGCATT TTCTGTACAC 180 AACGGATTGA TCTTATCGTT CTATGATTCA ACTCTACACC AAATATCTGA ATTGTCTCTT 108190 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AACGGATTGA TCTTATCGTT CTATGATTCA ACTCTACACC AAATATTTGA ATTGTCTCTT 240 ATCAAAATTT CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT 108130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAATTT CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT 300 CTGTAAGAG 108121 |||||| || CTGTAAAAG 309 hqPGS_C08SLm0006K11.1-_SGN-E244305- (108429 108121) ******************************************************************************** EST sequence 96 +strand 529 n (File: SGN-E252880+) 1 TAGATGCTGC CGTCGCCGTT CTCTATCTCC GCCAATGAAA TCTCTGGCTT CCACTGCAGC 61 TCTACTTGTT TCTACTTCTC CGCCGTCTTT ACGATCTTCT CTCTTACCAA GTCTTCGACC 121 TCTTCTTTAT CGAGCTCGCC TCCGCAACAA GCTTAATCTG AGAAGATTGG GAAATGGAAC 181 TTGCCGGGCA GAGTTTGCAA ACGATGTGCC TTACGCCGCT GCTATTGGTG CTTGCATTTT 241 GAGCTCGTGG GTTTTCCCGA CTACTTACAC GGAGGAGGAC GATGGTGAAT CCACAATTGA 301 TTCTGCTGAT GCGAGGTTTG CTGTCATGGC AATTATCAGC TTCATTCCGT ATTTTAATTG 361 GATGAGTTGG GTTTTTGCGT GGTTGGATAC TGGGAAACCA CGTTATGCAG TTTATGCTCT 421 TGTGTATTTG GCTCCATATT TAAGCAACAA CCTGTCTCTA TCTCCTGAAG ATAGCTTTCT 481 ACCCATTGCT AGCATCCTCT TGTGCATCTT CCACATTCAG CTGGAAGCA Predicted gene structure (within gDNA segment 111335 to 108611): Exon 1 110735 110576 ( 160 n); cDNA 1 160 ( 160 n); score: 0.981 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 161 364 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 365 444 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 109386 109311 ( 76 n); cDNA 445 520 ( 76 n); score: 1.000 Intron 4 109310 108691 ( 620 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 0) Exon 5 108690 108682 ( 9 n); cDNA 521 529 ( 9 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E252880+ 0.994 529 1.000 C PGS_C08SLm0006K11.1-_SGN-E252880+ (110735 110576,110462 110259,110100 110021,109386 109311,108690 108682) Alignment (genomic DNA sequence = upper lines): TAGATGCTGC CGTCGCCGTT CTCTATCTCC GCCAATGAAA TCTCTCACTT CCACTGCAGC 110676 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| TAGATGCTGC CGTCGCCGTT CTCTATCTCC GCCAATGAAA TCTCTGGCTT CCACTGCAGC 60 TCTACTTCTT TCTACTTCTC CGCCGTCTTT ACGATCTTCT CTCTTACCAA GTCTTCGACC 110616 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTTGTT TCTACTTCTC CGCCGTCTTT ACGATCTTCT CTCTTACCAA GTCTTCGACC 120 TCTTCTTTAT CGAGCTCGCC TCCGCAACAA GCTTAATCTG GTAATTAACT TAATTACTAC 110556 |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTTAT CGAGCTCGCC TCCGCAACAA GCTTAATCTG .......... .......... 160 GTGTTCTAAT CTCATTTTAA CTTAAAAACC TACCTACATG TACTGGAATC AAAATGAGTT 110496 .......... .......... .......... .......... .......... .......... 160 CAATAGAGCT GAAATAGGTT ATTGATTTTG TAGAGAAGAT TGGGAAATGG AACTTGCCGG 110436 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AGAAGAT TGGGAAATGG AACTTGCCGG 187 GCAGAGTTTG CAAACGATGT GCCTTACGCC GCTGCTATTG GTGCTTGCAT TTTGAGCTCG 110376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGTTTG CAAACGATGT GCCTTACGCC GCTGCTATTG GTGCTTGCAT TTTGAGCTCG 247 TGGGTTTTCC CGACTACTTA CACGGAGGAG GACGATGGTG AATCCACAAT TGATTCTGCT 110316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTTTCC CGACTACTTA CACGGAGGAG GACGATGGTG AATCCACAAT TGATTCTGCT 307 GATGCGAGGT TTGCTGTCAT GGCAATTATC AGCTTCATTC CGTATTTTAA TTGGATGGTG 110256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GATGCGAGGT TTGCTGTCAT GGCAATTATC AGCTTCATTC CGTATTTTAA TTGGATG... 364 AGATTTTTTC TTAATCATCA TTTGTTTTAA ATTGGAATAT AGGCGTTTAG GGTTGAGGAG 110196 .......... .......... .......... .......... .......... .......... 364 CGTGAAGAGT TGTTGTTGTT TGGAACCATT TAGGGGATTC ATATAGCTAA GTCCAACTAA 110136 .......... .......... .......... .......... .......... .......... 364 CTTGGGATTG ATTGATTTGC TGGTTTACTT TGTAGAGTTG GGTTTTTGCG TGGTTGGATA 110076 ||||| |||||||||| |||||||||| .......... .......... .......... .....AGTTG GGTTTTTGCG TGGTTGGATA 389 CTGGGAAACC ACGTTATGCA GTTTATGCTC TTGTGTATTT GGCTCCATAT TTAAGGTAAG 110016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTGGGAAACC ACGTTATGCA GTTTATGCTC TTGTGTATTT GGCTCCATAT TTAAG..... 444 GAGCTCTTAA AACTTTAGTT TTCTAGGTGA TGTTTTAATA TCATGTCTTG TCACCACCCT 109956 .......... .......... .......... .......... .......... .......... 444 GAACGTGCTT TAAGGAATGT ATTGAAGTTT GAACTAGCAG AAAGAAAAAA AACACATAGA 109896 .......... .......... .......... .......... .......... .......... 444 GTTCTATCTT GTCATCTATA TTAACAAGGA TCCTTCACGA GTTGTGGTAA ATGAAGGATT 109836 .......... .......... .......... .......... .......... .......... 444 GTACTCTATT TCCATGAATG ACTGCTTATC CTTCTTGATT TCCATGTTAA GCTTCCAACT 109776 .......... .......... .......... .......... .......... .......... 444 CTGATATGAT TGTAAGATTT AAAGTTTATT GTTGGAAGAC AATTACCCCT AATTATTGGA 109716 .......... .......... .......... .......... .......... .......... 444 CTAGAAAGAC TTGTAAAATT TTAAAGTTCA CTAACTAGTC TCAGGGTTGG CACAAGGATT 109656 .......... .......... .......... .......... .......... .......... 444 TTGACCAAGG AACTTGAAAA TATGCAATGA AATGGTGCTA GTGAAGCTTG CCTGTGGGAA 109596 .......... .......... .......... .......... .......... .......... 444 CCCCTACAGA TTTTGAACCA CTCTACAAAG ACATCCTTTG TTCTTTTTGT CCTTTCTTGG 109536 .......... .......... .......... .......... .......... .......... 444 TAACATCAGA TTCTCTAGGA ATTTGGTATA CCCTGCTGCT ACAAGTTTAG GCAAAGGCAT 109476 .......... .......... .......... .......... .......... .......... 444 TATCAGCATT TTTTGATGTT TAGTTGAGGC ATTTTGCCTT GATATTTATA ACCAAGCATT 109416 .......... .......... .......... .......... .......... .......... 444 TCAATCTTAT GCTCTTTTAT CGTATGCAGC AACAACCTGT CTCTATCTCC TGAAGATAGC 109356 | |||||||||| |||||||||| |||||||||| .......... .......... .........C AACAACCTGT CTCTATCTCC TGAAGATAGC 475 TTTCTACCCA TTGCTAGCAT CCTCTTGTGC ATCTTCCACA TTCAGGTATA TATTTACAGT 109296 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTCTACCCA TTGCTAGCAT CCTCTTGTGC ATCTTCCACA TTCAG..... .......... 520 CTATCTGAAA CTCTATAAAT TAATTATGCT TGAGGTTCTC TGATATAATC CTGGAAAGCG 109236 .......... .......... .......... .......... .......... .......... 520 CAGCTCACAG GGTTTATTGC AAGCAGACTA GAGCATCTAA TCGTAGTTTT TGTTTCCGTT 109176 .......... .......... .......... .......... .......... .......... 520 TTTGTTTCTT CCAATAGTGG GAGTTATTGA ATTCTATTTT TAGTAAATTT TTCCTGTTTC 109116 .......... .......... .......... .......... .......... .......... 520 CTTTTCTTTG TAGATTCTAC TTAATATATT GTTTAGTAGA TTTGGGATTT GCTTTTCCTT 109056 .......... .......... .......... .......... .......... .......... 520 GTTTTTACTT ATTTCAGTTG TTGATTCGGA TAGCGATGTA ATAGTTATAA ATACTTGCTG 108996 .......... .......... .......... .......... .......... .......... 520 GCCTCATAGT TAAGGGGGAG ACGGACTATT GCAAATACAA ACAAAATTGT GATGTTAGAG 108936 .......... .......... .......... .......... .......... .......... 520 ATCTTATAGT TAGGATCGAG CTTGAAAACT ACTTTAAAGC TTGAAGTCTT CATGATAATT 108876 .......... .......... .......... .......... .......... .......... 520 CTTTTCTTCC TTTGATGTGT ATATCTTTGG TTATATCTTG TCATTCTATT TAGGGTCAGA 108816 .......... .......... .......... .......... .......... .......... 520 GATCCTTTTT TTGCTCTTCA ATTCCTTCAG TTATTTGTAT AATTCTATTT CATTATTTAG 108756 .......... .......... .......... .......... .......... .......... 520 TTTATCACTC CGCTTTGTGT ATCCTGAATT GTATCATCCT CATTGAAAGT TTCATATTGT 108696 .......... .......... .......... .......... .......... .......... 520 TCCAGCTGGA AGCA 108682 ||||| |||| .....CTGGA AGCA 529 hqPGS_C08SLm0006K11.1-_SGN-E252880+ (110735 110576,110462 110259,110100 110021,109386 109311) ******************************************************************************** EST sequence 106 +strand 503 n (File: SGN-E306916+) 1 CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC 61 TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC 121 TCGCCTCCGC AACAAGCTTA ATCTGAGAAG ATTGGGAAAT GGAACTTGCC GGGCAGAGTT 181 TGCAAACGAT GTGCCTTACG CCGCTGCTAT TGGTGCTTGC ATTTTGAGCT CGTGGGTTTT 241 CCCGACTACT TACACGGAGG AGGACGATGG TGAATCCACA ATTGATTCTG CTGATGCGAG 301 GTTTGCTGTC ATGGCAATTA TCAGCTTCAT TCCGTATTTT AATTGGATGA GTTGGGTTTT 361 TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT GCTCTTGTGT ATTTGGCTCC 421 ATATTTAAGC AACAACCTGT CTCTATCTCC TGAAGATAGC TTTCTACCCA TTGCTAGCAT 481 CCTCTTGTGC ATCTTCCACA TTC Predicted gene structure (within gDNA segment 111320 to 108703): Exon 1 110720 110576 ( 145 n); cDNA 1 145 ( 145 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 146 349 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 350 429 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 109386 109313 ( 74 n); cDNA 430 503 ( 74 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E306916+ 1.000 503 1.000 C PGS_C08SLm0006K11.1-_SGN-E306916+ (110720 110576,110462 110259,110100 110021,109386 109313) Alignment (genomic DNA sequence = upper lines): CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC 110661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC 60 TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC 110601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC 120 TCGCCTCCGC AACAAGCTTA ATCTGGTAAT TAACTTAATT ACTACGTGTT CTAATCTCAT 110541 |||||||||| |||||||||| ||||| TCGCCTCCGC AACAAGCTTA ATCTG..... .......... .......... .......... 145 TTTAACTTAA AAACCTACCT ACATGTACTG GAATCAAAAT GAGTTCAATA GAGCTGAAAT 110481 .......... .......... .......... .......... .......... .......... 145 AGGTTATTGA TTTTGTAGAG AAGATTGGGA AATGGAACTT GCCGGGCAGA GTTTGCAAAC 110421 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG AAGATTGGGA AATGGAACTT GCCGGGCAGA GTTTGCAAAC 187 GATGTGCCTT ACGCCGCTGC TATTGGTGCT TGCATTTTGA GCTCGTGGGT TTTCCCGACT 110361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTGCCTT ACGCCGCTGC TATTGGTGCT TGCATTTTGA GCTCGTGGGT TTTCCCGACT 247 ACTTACACGG AGGAGGACGA TGGTGAATCC ACAATTGATT CTGCTGATGC GAGGTTTGCT 110301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTACACGG AGGAGGACGA TGGTGAATCC ACAATTGATT CTGCTGATGC GAGGTTTGCT 307 GTCATGGCAA TTATCAGCTT CATTCCGTAT TTTAATTGGA TGGTGAGATT TTTTCTTAAT 110241 |||||||||| |||||||||| |||||||||| |||||||||| || GTCATGGCAA TTATCAGCTT CATTCCGTAT TTTAATTGGA TG........ .......... 349 CATCATTTGT TTTAAATTGG AATATAGGCG TTTAGGGTTG AGGAGCGTGA AGAGTTGTTG 110181 .......... .......... .......... .......... .......... .......... 349 TTGTTTGGAA CCATTTAGGG GATTCATATA GCTAAGTCCA ACTAACTTGG GATTGATTGA 110121 .......... .......... .......... .......... .......... .......... 349 TTTGCTGGTT TACTTTGTAG AGTTGGGTTT TTGCGTGGTT GGATACTGGG AAACCACGTT 110061 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGTTGGGTTT TTGCGTGGTT GGATACTGGG AAACCACGTT 389 ATGCAGTTTA TGCTCTTGTG TATTTGGCTC CATATTTAAG GTAAGGAGCT CTTAAAACTT 110001 |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGTTTA TGCTCTTGTG TATTTGGCTC CATATTTAAG .......... .......... 429 TAGTTTTCTA GGTGATGTTT TAATATCATG TCTTGTCACC ACCCTGAACG TGCTTTAAGG 109941 .......... .......... .......... .......... .......... .......... 429 AATGTATTGA AGTTTGAACT AGCAGAAAGA AAAAAAACAC ATAGAGTTCT ATCTTGTCAT 109881 .......... .......... .......... .......... .......... .......... 429 CTATATTAAC AAGGATCCTT CACGAGTTGT GGTAAATGAA GGATTGTACT CTATTTCCAT 109821 .......... .......... .......... .......... .......... .......... 429 GAATGACTGC TTATCCTTCT TGATTTCCAT GTTAAGCTTC CAACTCTGAT ATGATTGTAA 109761 .......... .......... .......... .......... .......... .......... 429 GATTTAAAGT TTATTGTTGG AAGACAATTA CCCCTAATTA TTGGACTAGA AAGACTTGTA 109701 .......... .......... .......... .......... .......... .......... 429 AAATTTTAAA GTTCACTAAC TAGTCTCAGG GTTGGCACAA GGATTTTGAC CAAGGAACTT 109641 .......... .......... .......... .......... .......... .......... 429 GAAAATATGC AATGAAATGG TGCTAGTGAA GCTTGCCTGT GGGAACCCCT ACAGATTTTG 109581 .......... .......... .......... .......... .......... .......... 429 AACCACTCTA CAAAGACATC CTTTGTTCTT TTTGTCCTTT CTTGGTAACA TCAGATTCTC 109521 .......... .......... .......... .......... .......... .......... 429 TAGGAATTTG GTATACCCTG CTGCTACAAG TTTAGGCAAA GGCATTATCA GCATTTTTTG 109461 .......... .......... .......... .......... .......... .......... 429 ATGTTTAGTT GAGGCATTTT GCCTTGATAT TTATAACCAA GCATTTCAAT CTTATGCTCT 109401 .......... .......... .......... .......... .......... .......... 429 TTTATCGTAT GCAGCAACAA CCTGTCTCTA TCTCCTGAAG ATAGCTTTCT ACCCATTGCT 109341 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CAACAA CCTGTCTCTA TCTCCTGAAG ATAGCTTTCT ACCCATTGCT 475 AGCATCCTCT TGTGCATCTT CCACATTC 109313 |||||||||| |||||||||| |||||||| AGCATCCTCT TGTGCATCTT CCACATTC 503 hqPGS_C08SLm0006K11.1-_SGN-E306916+ (110720 110576,110462 110259,110100 110021,109386 109313) ******************************************************************************** EST sequence 142 +strand 462 n (File: SGN-E391676+) 1 CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT 61 GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT 121 CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA ATCTGAGAAG ATTGGGAAAT 181 GGAACTTGCC GGGCAGAGTT TGCAAACGAT GTGCCTTACG CCGCTGCTAT TGGTGCTTGC 241 ATTTTGAGCT CGTGGGTTTT CCCGACTACT TACACGGAGG AGGACGATGG TGAATCCACA 301 ATTGATTCTG CTGATGCGAG GTTTGCTGTC ATGGCAATTA TCAGCTTCAT TCCGTATTTT 361 AATTGGATGA GTTGGGTTTT TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT 421 GCTCGTGGGG ATTTGGCTCC ATATTTAAGC AACAACCTGT CT Predicted gene structure (within gDNA segment 111340 to 109281): Exon 1 110740 110576 ( 165 n); cDNA 1 165 ( 165 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 166 369 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 370 449 ( 80 n); score: 0.962 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 0.94), Pa: 0.984 (s: 0) Exon 4 109386 109374 ( 13 n); cDNA 450 462 ( 13 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E391676+ 0.993 462 1.000 C PGS_C08SLm0006K11.1-_SGN-E391676+ (110740 110576,110462 110259,110100 110021,109386 109374) Alignment (genomic DNA sequence = upper lines): CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT 110681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA TGAAATCTCT CACTTCCACT 60 GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT 110621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT CTTCTCTCTT ACCAAGTCTT 120 CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA ATCTGGTAAT TAACTTAATT 110561 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA ATCTG..... .......... 165 ACTACGTGTT CTAATCTCAT TTTAACTTAA AAACCTACCT ACATGTACTG GAATCAAAAT 110501 .......... .......... .......... .......... .......... .......... 165 GAGTTCAATA GAGCTGAAAT AGGTTATTGA TTTTGTAGAG AAGATTGGGA AATGGAACTT 110441 || |||||||||| |||||||||| .......... .......... .......... ........AG AAGATTGGGA AATGGAACTT 187 GCCGGGCAGA GTTTGCAAAC GATGTGCCTT ACGCCGCTGC TATTGGTGCT TGCATTTTGA 110381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGGCAGA GTTTGCAAAC GATGTGCCTT ACGCCGCTGC TATTGGTGCT TGCATTTTGA 247 GCTCGTGGGT TTTCCCGACT ACTTACACGG AGGAGGACGA TGGTGAATCC ACAATTGATT 110321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGTGGGT TTTCCCGACT ACTTACACGG AGGAGGACGA TGGTGAATCC ACAATTGATT 307 CTGCTGATGC GAGGTTTGCT GTCATGGCAA TTATCAGCTT CATTCCGTAT TTTAATTGGA 110261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGATGC GAGGTTTGCT GTCATGGCAA TTATCAGCTT CATTCCGTAT TTTAATTGGA 367 TGGTGAGATT TTTTCTTAAT CATCATTTGT TTTAAATTGG AATATAGGCG TTTAGGGTTG 110201 || TG........ .......... .......... .......... .......... .......... 369 AGGAGCGTGA AGAGTTGTTG TTGTTTGGAA CCATTTAGGG GATTCATATA GCTAAGTCCA 110141 .......... .......... .......... .......... .......... .......... 369 ACTAACTTGG GATTGATTGA TTTGCTGGTT TACTTTGTAG AGTTGGGTTT TTGCGTGGTT 110081 |||||||||| |||||||||| .......... .......... .......... .......... AGTTGGGTTT TTGCGTGGTT 389 GGATACTGGG AAACCACGTT ATGCAGTTTA TGCTCTTGTG TATTTGGCTC CATATTTAAG 110021 |||||||||| |||||||||| |||||||||| ||||| || | ||||||||| |||||||||| GGATACTGGG AAACCACGTT ATGCAGTTTA TGCTCGTGGG GATTTGGCTC CATATTTAAG 449 GTAAGGAGCT CTTAAAACTT TAGTTTTCTA GGTGATGTTT TAATATCATG TCTTGTCACC 109961 .......... .......... .......... .......... .......... .......... 449 ACCCTGAACG TGCTTTAAGG AATGTATTGA AGTTTGAACT AGCAGAAAGA AAAAAAACAC 109901 .......... .......... .......... .......... .......... .......... 449 ATAGAGTTCT ATCTTGTCAT CTATATTAAC AAGGATCCTT CACGAGTTGT GGTAAATGAA 109841 .......... .......... .......... .......... .......... .......... 449 GGATTGTACT CTATTTCCAT GAATGACTGC TTATCCTTCT TGATTTCCAT GTTAAGCTTC 109781 .......... .......... .......... .......... .......... .......... 449 CAACTCTGAT ATGATTGTAA GATTTAAAGT TTATTGTTGG AAGACAATTA CCCCTAATTA 109721 .......... .......... .......... .......... .......... .......... 449 TTGGACTAGA AAGACTTGTA AAATTTTAAA GTTCACTAAC TAGTCTCAGG GTTGGCACAA 109661 .......... .......... .......... .......... .......... .......... 449 GGATTTTGAC CAAGGAACTT GAAAATATGC AATGAAATGG TGCTAGTGAA GCTTGCCTGT 109601 .......... .......... .......... .......... .......... .......... 449 GGGAACCCCT ACAGATTTTG AACCACTCTA CAAAGACATC CTTTGTTCTT TTTGTCCTTT 109541 .......... .......... .......... .......... .......... .......... 449 CTTGGTAACA TCAGATTCTC TAGGAATTTG GTATACCCTG CTGCTACAAG TTTAGGCAAA 109481 .......... .......... .......... .......... .......... .......... 449 GGCATTATCA GCATTTTTTG ATGTTTAGTT GAGGCATTTT GCCTTGATAT TTATAACCAA 109421 .......... .......... .......... .......... .......... .......... 449 GCATTTCAAT CTTATGCTCT TTTATCGTAT GCAGCAACAA CCTGTCT 109374 |||||| ||||||| .......... .......... .......... ....CAACAA CCTGTCT 462 hqPGS_C08SLm0006K11.1-_SGN-E391676+ (110740 110576,110462 110259,110100 110021) ******************************************************************************** EST sequence 122 +strand 482 n (File: SGN-E244304+) 1 TACAGTATTC ACGAATCTTT TTCTAACTAA TAGTACTAAT TCTATAATCC TAATTCTAAC 61 CTAATCTACT TCGCCGGGCA CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA 121 TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT 181 CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA 241 ATCTGAGAAG ATTGGGAAAT GGAACTTGCC GGGCAGAGTT TGCAAACGAT GTGCCTTACG 301 CCGCTGCTAT TGGTGCTTGC ATTTTGAGCT CGTGGGTTTT CCCGACTACT TACACGGAGG 361 AGGACGATGG TGAATCCACA ATTGATTCTG CTGATGCGAG GTTTGCTGTC ATGGCAATTA 421 TCAGCTTCAT TCCGTATTTT AATTGGATGA GTTGGGTTTT TGCGTGGTTG GATACTGGGA 481 AA Predicted gene structure (within gDNA segment 111420 to 109458): Exon 1 110820 110576 ( 245 n); cDNA 1 245 ( 245 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 246 449 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 0) Exon 3 110100 110068 ( 33 n); cDNA 450 482 ( 33 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E244304+ 1.000 482 1.000 C PGS_C08SLm0006K11.1-_SGN-E244304+ (110820 110576,110462 110259,110100 110068) Alignment (genomic DNA sequence = upper lines): TACAGTATTC ACGAATCTTT TTCTAACTAA TAGTACTAAT TCTATAATCC TAATTCTAAC 110761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGTATTC ACGAATCTTT TTCTAACTAA TAGTACTAAT TCTATAATCC TAATTCTAAC 60 CTAATCTACT TCGCCGGGCA CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA 110701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATCTACT TCGCCGGGCA CAGATTAGAT GCTGCCGTCG CCGTTCTCTA TCTCCGCCAA 120 TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT 110641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATCTCT CACTTCCACT GCAGCTCTAC TTCTTTCTAC TTCTCCGCCG TCTTTACGAT 180 CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA 110581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTCTCTT ACCAAGTCTT CGACCTCTTC TTTATCGAGC TCGCCTCCGC AACAAGCTTA 240 ATCTGGTAAT TAACTTAATT ACTACGTGTT CTAATCTCAT TTTAACTTAA AAACCTACCT 110521 ||||| ATCTG..... .......... .......... .......... .......... .......... 245 ACATGTACTG GAATCAAAAT GAGTTCAATA GAGCTGAAAT AGGTTATTGA TTTTGTAGAG 110461 || .......... .......... .......... .......... .......... ........AG 247 AAGATTGGGA AATGGAACTT GCCGGGCAGA GTTTGCAAAC GATGTGCCTT ACGCCGCTGC 110401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTGGGA AATGGAACTT GCCGGGCAGA GTTTGCAAAC GATGTGCCTT ACGCCGCTGC 307 TATTGGTGCT TGCATTTTGA GCTCGTGGGT TTTCCCGACT ACTTACACGG AGGAGGACGA 110341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGTGCT TGCATTTTGA GCTCGTGGGT TTTCCCGACT ACTTACACGG AGGAGGACGA 367 TGGTGAATCC ACAATTGATT CTGCTGATGC GAGGTTTGCT GTCATGGCAA TTATCAGCTT 110281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAATCC ACAATTGATT CTGCTGATGC GAGGTTTGCT GTCATGGCAA TTATCAGCTT 427 CATTCCGTAT TTTAATTGGA TGGTGAGATT TTTTCTTAAT CATCATTTGT TTTAAATTGG 110221 |||||||||| |||||||||| || CATTCCGTAT TTTAATTGGA TG........ .......... .......... .......... 449 AATATAGGCG TTTAGGGTTG AGGAGCGTGA AGAGTTGTTG TTGTTTGGAA CCATTTAGGG 110161 .......... .......... .......... .......... .......... .......... 449 GATTCATATA GCTAAGTCCA ACTAACTTGG GATTGATTGA TTTGCTGGTT TACTTTGTAG 110101 .......... .......... .......... .......... .......... .......... 449 AGTTGGGTTT TTGCGTGGTT GGATACTGGG AAA 110068 |||||||||| |||||||||| |||||||||| ||| AGTTGGGTTT TTGCGTGGTT GGATACTGGG AAA 482 hqPGS_C08SLm0006K11.1-_SGN-E244304+ (110820 110576,110462 110259,110100 110068) ******************************************************************************** EST sequence 23 -strand 765 n (File: SGN-E318055-) 1 CTTACAAAAT CTCTTTCAAC AGACGTCAAT TCAACAGGAT CTCATGTAAA ATCTATTGAG 61 TAGCTTGCAA CTATCTGAGG CAGGAGATTC TTCTCAAAAT GGGAAGTTAT CTCCCTTACA 121 GCGCCCAGAG AGCAATGGAA TTGTTGAAGC AGCTGTTTCT GAGAGGGAGA AGCTATTATT 181 AGTCAAAATA TCTGAGCTTC AGGCTAGGAT GATTAATTTG ACAGATGAGT TAACTGCAGA 241 AAAATTAAAA TACTGGCAGT TGCAACAGCG GTTAAATGCC ATGTCAAGTT GCGGAGAGGA 301 TGGGGACAGA AGAGAGTTGG AATCCTGATG ACAATGATAC GTTTCATATA TAAACACCGT 361 GTATATTCAG GTTTAAGTAT AGGAAGAGGC AGAGTGTAAT TATTCTTATG TCACTGAATC 421 ATGCACTTGT CCTTGTTGAA TAGCTCGTGT GGGAAGAATC CATCTCCAAG AATCAATAAA 481 CAAAATAATG AGCGCATAGA TAATTTCTTC ATTTGTTTGA CAAGTAGGTG CTGAAAACAA 541 GCTTCTTGTG CAGATTCACG TCAAGGGATT ATTATTTTTA TTTAGATATA GAAGATTGTG 601 GAGGGAGGAA GGGCGGGCTC AGCGGGCAGA GACTAGAGAG TGGGAGTGGT GGGTTCAATT 661 TCGAATTTCA TTTGTAGATC CTTAGTTTAT GATGTAGTCA ATATTAAGGT GTAATTTTGT 721 ATCATATATG ATGATCATGA GATGTGTGTT CAATAAAGCT TTTAG Predicted gene structure (within gDNA segment 113413 to 110583): Exon 1 112803 112767 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 112766 112581 ( 186 n); Pd: 0.000 (s: 0), Pa: 0.985 (s: 0.94) Exon 2 112580 112529 ( 52 n); cDNA 38 89 ( 52 n); score: 0.942 Intron 2 112528 112423 ( 106 n); Pd: 0.417 (s: 0.94), Pa: 0.989 (s: 1.00) Exon 3 112422 112370 ( 53 n); cDNA 90 142 ( 53 n); score: 1.000 Intron 3 112369 112213 ( 157 n); Pd: 0.992 (s: 1.00), Pa: 0.861 (s: 1.00) Exon 4 112212 112148 ( 65 n); cDNA 143 207 ( 65 n); score: 1.000 Intron 4 112147 112050 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 112049 111998 ( 52 n); cDNA 208 259 ( 52 n); score: 1.000 Intron 5 111997 111783 ( 215 n); Pd: 0.980 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 6 111782 111672 ( 111 n); cDNA 260 370 ( 111 n); score: 1.000 Intron 6 111671 111578 ( 94 n); Pd: 0.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 7 111577 111183 ( 395 n); cDNA 371 765 ( 395 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E318055- 0.996 765 1.000 C PGS_C08SLm0006K11.1-_SGN-E318055- (112803 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111183) Alignment (genomic DNA sequence = upper lines): CTTACAAAAT CTCTTTCAAC AGACGTCAAT TCAACAGGTA AGGCATCAGT GTATGGTAAA 112744 |||||||||| |||||||||| |||||||||| ||||||| CTTACAAAAT CTCTTTCAAC AGACGTCAAT TCAACAG... .......... .......... 37 GATGCAAGAT CCGTGTCCCC CCTCCCCCCC CACCCACCCA AACGCGCACA CAGGAAAAAA 112684 .......... .......... .......... .......... .......... .......... 37 TACAGAACAA AAACAAGAAA AGAAATGTTA AATTCAGGAT TAACTAGTCC GTTTCTATTT 112624 .......... .......... .......... .......... .......... .......... 37 CTCGGTTGTT CTAACGCTTA ATTTCTACTG CATTTGTTAT CAGGATCTCA TTGTAAATCT 112564 ||||||| | |||||| .......... .......... .......... .......... ...GATCTCA TGTAAAATCT 54 ATTGAGTAGC TTGCAACTAT CTGAGGCAGG AGATTGTAAG TATGAGGAAG AAATGTCTGA 112504 |||||||||| |||||||||| |||||||||| ||||| ATTGAGTAGC TTGCAACTAT CTGAGGCAGG AGATT..... .......... .......... 89 TGTCCTTATG TAAAGAAATA TGTTCTACCA ATAGTAACAT GGATTCAGAT TTACTTAGAT 112444 .......... .......... .......... .......... .......... .......... 89 TGAAATTTCT TGTTCTTTCA GCTTCTCAAA ATGGGAAGTT ATCTCCCTTA CAGCGCCCAG 112384 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CTTCTCAAA ATGGGAAGTT ATCTCCCTTA CAGCGCCCAG 128 AGAGCAATGG AATTGTAAGT ACATGTCTTT GCTTTGAAAA TTTGCTTAGC TTTAAGACTT 112324 |||||||||| |||| AGAGCAATGG AATT...... .......... .......... .......... .......... 142 TGAGAAAGTG CAAATGTTTA CATGGAGCTG TATAAACATG TCTCTTATTG GGAACTTGTC 112264 .......... .......... .......... .......... .......... .......... 142 TTTTATCACA TGGCAACCAT TCATTTTGAT GAAGACACTT CCGTTTTACA GGTTGAAGCA 112204 ||||||||| .......... .......... .......... .......... .......... .GTTGAAGCA 151 GCTGTTTCTG AGAGGGAGAA GCTATTATTA GTCAAAATAT CTGAGCTTCA GGCTAGGTCA 112144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCTGTTTCTG AGAGGGAGAA GCTATTATTA GTCAAAATAT CTGAGCTTCA GGCTAG.... 207 GTCCACTGTG GACGCAAATC AACTGTGGTG CATTTTTCTC ACAGTTCTAT GTGGGACTTC 112084 .......... .......... .......... .......... .......... .......... 207 TAATTGAAGA ACTGATCTTC TCTCTACTTT GCAGGATGAT TAATTTGACA GATGAGTTAA 112024 |||||| |||||||||| |||||||||| .......... .......... .......... ....GATGAT TAATTTGACA GATGAGTTAA 233 CTGCAGAAAA ATTAAAATAC TGGCAGGTGA GTGCACAGTG GTTTCTTTGA TGCAAAGGTC 111964 |||||||||| |||||||||| |||||| CTGCAGAAAA ATTAAAATAC TGGCAG.... .......... .......... .......... 259 TATGTAATAT TAATTGAATT GAAGTAAATG AAAAGATAGT AATAGAAGAC CAACTGTGTG 111904 .......... .......... .......... .......... .......... .......... 259 GAACTACTTT GATGAGGTTT AAAAAACTAG GTCCAAAGTT AAAACAATTG AGGGGATGAA 111844 .......... .......... .......... .......... .......... .......... 259 CTGGAAAGGT TTATTTATAG CATCCAAGTG TGTTGCTAAC AATGGTTTTT CACTGCTACA 111784 .......... .......... .......... .......... .......... .......... 259 GTTGCAACAG CGGTTAAATG CCATGTCAAG TTGCGGAGAG GATGGGGACA GAAGAGAGTT 111724 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TTGCAACAG CGGTTAAATG CCATGTCAAG TTGCGGAGAG GATGGGGACA GAAGAGAGTT 318 GGAATCCTGA TGACAATGAT ACGTTTCATA TATAAACACC GTGTATATTC AGGTGTCTAT 111664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GGAATCCTGA TGACAATGAT ACGTTTCATA TATAAACACC GTGTATATTC AG........ 370 TTGATGTTGC TAGAGCAGAT AATTATGATT TTTTTCACAC ACATATAAAT GCCTTGAACA 111604 .......... .......... .......... .......... .......... .......... 370 GACGTAATTG TCGTTTGCTT TTGCAGGTTT AAGTATAGGA AGAGGCAGAG TGTAATTATT 111544 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTTT AAGTATAGGA AGAGGCAGAG TGTAATTATT 404 CTTATGTCAC TGAATCATGC ACTTGTCCTT GTTGAATAGC TCGTGTGGGA AGAATCCATC 111484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATGTCAC TGAATCATGC ACTTGTCCTT GTTGAATAGC TCGTGTGGGA AGAATCCATC 464 TCCAAGAATC AATAAACAAA ATAATGAGCG CATAGATAAT TTCTTCATTT GTTTGACAAG 111424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGAATC AATAAACAAA ATAATGAGCG CATAGATAAT TTCTTCATTT GTTTGACAAG 524 TAGGTGCTGA AAACAAGCTT CTTGTGCAGA TTCACGTCAA GGGATTATTA TTTTTATTTA 111364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTGCTGA AAACAAGCTT CTTGTGCAGA TTCACGTCAA GGGATTATTA TTTTTATTTA 584 GATATAGAAG ATTGTGGAGG GAGGAAGGGC GGGCTCAGCG GGCAGAGACT AGAGAGTGGG 111304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATAGAAG ATTGTGGAGG GAGGAAGGGC GGGCTCAGCG GGCAGAGACT AGAGAGTGGG 644 AGTGGTGGGT TCAATTTCGA ATTTCATTTG TAGATCCTTA GTTTATGATG TAGTCAATAT 111244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGTGGGT TCAATTTCGA ATTTCATTTG TAGATCCTTA GTTTATGATG TAGTCAATAT 704 TAAGGTGTAA TTTTGTATCA TATATGATGA TCATGAGATG TGTGTTCAAT AAAGCTTTTA 111184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGTGTAA TTTTGTATCA TATATGATGA TCATGAGATG TGTGTTCAAT AAAGCTTTTA 764 G 111183 | G 765 hqPGS_C08SLm0006K11.1-_SGN-E318055- (112803 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111183) ******************************************************************************** EST sequence 93 +strand 611 n (File: SGN-E351833+) 1 GCCCAGAGAG CAATGGAATT GTTGAAGCAG CTGTTTCTGA GAGGGAGAAG CTATTATTAG 61 TCAAAATATC TGAGCTTCAG GCTAGGATGA TTAATTTGAC AGATGAGTTA ACTGCAGAAA 121 AATTAAAATA CTGGCAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG 181 GGGACAGAAG AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT 241 ATATTCAGGT TTAAGTATAG GAAGAGGCAG AGTGTAATTA TTCTTATGTC ACTGAATCAT 301 GCACTTGTCC TTGTTGAATA GCTCGTGTGG GAAGAATCCA TCTCCAAGAA TCAATAAACA 361 AAATAATGAG CGCATAGATA ATTTCTTCAT TTGTTTGACA AGTAGGTGCT GAAAACAAGC 421 TTCTTGTGCA GATTCACGTC AAGGGATTAT TATTTTTATT TAGATATAGA AGATTGTGGA 481 GGGAGGAAGG GCGGGCTCAG CGGGCAGAGA CTAGAGAGTG GGAGTGGTGG GTTCAATTTC 541 GAATTTCATT TGTAGATCCT TAGTTTATGA TGTAGTCAAT ATTAAGGTGT AATTTTGTAT 601 CAAAAAAAAA A Predicted gene structure (within gDNA segment 113012 to 110524): Exon 1 112389 112370 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 112369 112213 ( 157 n); Pd: 0.992 (s: 0), Pa: 0.861 (s: 1.00) Exon 2 112212 112148 ( 65 n); cDNA 21 85 ( 65 n); score: 1.000 Intron 2 112147 112050 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 112049 111998 ( 52 n); cDNA 86 137 ( 52 n); score: 1.000 Intron 3 111997 111783 ( 215 n); Pd: 0.980 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 111782 111672 ( 111 n); cDNA 138 248 ( 111 n); score: 1.000 Intron 4 111671 111578 ( 94 n); Pd: 0.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 111577 111224 ( 354 n); cDNA 249 602 ( 354 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E351833+ 1.000 602 0.985 C PGS_C08SLm0006K11.1-_SGN-E351833+ (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) Alignment (genomic DNA sequence = upper lines): GCCCAGAGAG CAATGGAATT GTAAGTACAT GTCTTTGCTT TGAAAATTTG CTTAGCTTTA 112330 |||||||||| |||||||||| GCCCAGAGAG CAATGGAATT .......... .......... .......... .......... 20 AGACTTTGAG AAAGTGCAAA TGTTTACATG GAGCTGTATA AACATGTCTC TTATTGGGAA 112270 .......... .......... .......... .......... .......... .......... 20 CTTGTCTTTT ATCACATGGC AACCATTCAT TTTGATGAAG ACACTTCCGT TTTACAGGTT 112210 ||| .......... .......... .......... .......... .......... .......GTT 23 GAAGCAGCTG TTTCTGAGAG GGAGAAGCTA TTATTAGTCA AAATATCTGA GCTTCAGGCT 112150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCAGCTG TTTCTGAGAG GGAGAAGCTA TTATTAGTCA AAATATCTGA GCTTCAGGCT 83 AGGTCAGTCC ACTGTGGACG CAAATCAACT GTGGTGCATT TTTCTCACAG TTCTATGTGG 112090 || AG........ .......... .......... .......... .......... .......... 85 GACTTCTAAT TGAAGAACTG ATCTTCTCTC TACTTTGCAG GATGATTAAT TTGACAGATG 112030 |||||||||| |||||||||| .......... .......... .......... .......... GATGATTAAT TTGACAGATG 105 AGTTAACTGC AGAAAAATTA AAATACTGGC AGGTGAGTGC ACAGTGGTTT CTTTGATGCA 111970 |||||||||| |||||||||| |||||||||| || AGTTAACTGC AGAAAAATTA AAATACTGGC AG........ .......... .......... 137 AAGGTCTATG TAATATTAAT TGAATTGAAG TAAATGAAAA GATAGTAATA GAAGACCAAC 111910 .......... .......... .......... .......... .......... .......... 137 TGTGTGGAAC TACTTTGATG AGGTTTAAAA AACTAGGTCC AAAGTTAAAA CAATTGAGGG 111850 .......... .......... .......... .......... .......... .......... 137 GATGAACTGG AAAGGTTTAT TTATAGCATC CAAGTGTGTT GCTAACAATG GTTTTTCACT 111790 .......... .......... .......... .......... .......... .......... 137 GCTACAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 111730 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 190 AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAGGT 111670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAG.. 248 GTCTATTTGA TGTTGCTAGA GCAGATAATT ATGATTTTTT TCACACACAT ATAAATGCCT 111610 .......... .......... .......... .......... .......... .......... 248 TGAACAGACG TAATTGTCGT TTGCTTTTGC AGGTTTAAGT ATAGGAAGAG GCAGAGTGTA 111550 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTTTAAGT ATAGGAAGAG GCAGAGTGTA 276 ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 111490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 336 TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 111430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 396 GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 111370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 456 TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 111310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 516 AGTGGGAGTG GTGGGTTCAA TTTCGAATTT CATTTGTAGA TCCTTAGTTT ATGATGTAGT 111250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGAGTG GTGGGTTCAA TTTCGAATTT CATTTGTAGA TCCTTAGTTT ATGATGTAGT 576 CAATATTAAG GTGTAATTTT GTATCA 111224 |||||||||| |||||||||| |||||| CAATATTAAG GTGTAATTTT GTATCA 602 hqPGS_C08SLm0006K11.1-_SGN-E351833+ (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) ******************************************************************************** EST sequence 112 +strand 611 n (File: SGN-E351355+) 1 GCCCAGAGAG CAATGGAATT GTTGAAGCAG CTGTTTCTGA GAGGGAGAAG CTATTATTAG 61 TCAAAATATC TGAGCTTCAG GCTAGGATGA TTAATTTGAC AGATGAGTTA ACTGCAGAAA 121 AATTAAAATA CTGGCAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG 181 GGGACAGAAG AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT 241 ATATTCAGGT TTAAGTATAG GAAGAGGCAG AGTGTAATTA TTCTTATGTC ACTGAATCAT 301 GCACTTGTCC TTGTTGAATA GCTCGTGTGG GAAGAATCCA TCTCCAAGAA TCAATAAACA 361 AAATAATGAG CGCATAGATA ATTTCTTCAT TTGTTTGACA AGTAGGTGCT GAAAACAAGC 421 TTCTTGTGCA GATTCACGTC AAGGGATTAT TATTTTTATT TAGATATAGA AGATTGTGGA 481 GGGAGGAAGG GCGGGCTCAG CGGGCAGAGA CTAGAGAGTG GGAGTGGTGG GTTCAATTTC 541 GAATTTCATT TGTAGATCCT TAGTTTATGA TGTAGTCAAT ATTAAGGTGT AATTTTGTAT 601 CAAAAAAAAA A Predicted gene structure (within gDNA segment 113012 to 110524): Exon 1 112389 112370 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 112369 112213 ( 157 n); Pd: 0.992 (s: 0), Pa: 0.861 (s: 1.00) Exon 2 112212 112148 ( 65 n); cDNA 21 85 ( 65 n); score: 1.000 Intron 2 112147 112050 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 112049 111998 ( 52 n); cDNA 86 137 ( 52 n); score: 1.000 Intron 3 111997 111783 ( 215 n); Pd: 0.980 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 111782 111672 ( 111 n); cDNA 138 248 ( 111 n); score: 1.000 Intron 4 111671 111578 ( 94 n); Pd: 0.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 111577 111224 ( 354 n); cDNA 249 602 ( 354 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E351355+ 1.000 602 0.985 C PGS_C08SLm0006K11.1-_SGN-E351355+ (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) Alignment (genomic DNA sequence = upper lines): GCCCAGAGAG CAATGGAATT GTAAGTACAT GTCTTTGCTT TGAAAATTTG CTTAGCTTTA 112330 |||||||||| |||||||||| GCCCAGAGAG CAATGGAATT .......... .......... .......... .......... 20 AGACTTTGAG AAAGTGCAAA TGTTTACATG GAGCTGTATA AACATGTCTC TTATTGGGAA 112270 .......... .......... .......... .......... .......... .......... 20 CTTGTCTTTT ATCACATGGC AACCATTCAT TTTGATGAAG ACACTTCCGT TTTACAGGTT 112210 ||| .......... .......... .......... .......... .......... .......GTT 23 GAAGCAGCTG TTTCTGAGAG GGAGAAGCTA TTATTAGTCA AAATATCTGA GCTTCAGGCT 112150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCAGCTG TTTCTGAGAG GGAGAAGCTA TTATTAGTCA AAATATCTGA GCTTCAGGCT 83 AGGTCAGTCC ACTGTGGACG CAAATCAACT GTGGTGCATT TTTCTCACAG TTCTATGTGG 112090 || AG........ .......... .......... .......... .......... .......... 85 GACTTCTAAT TGAAGAACTG ATCTTCTCTC TACTTTGCAG GATGATTAAT TTGACAGATG 112030 |||||||||| |||||||||| .......... .......... .......... .......... GATGATTAAT TTGACAGATG 105 AGTTAACTGC AGAAAAATTA AAATACTGGC AGGTGAGTGC ACAGTGGTTT CTTTGATGCA 111970 |||||||||| |||||||||| |||||||||| || AGTTAACTGC AGAAAAATTA AAATACTGGC AG........ .......... .......... 137 AAGGTCTATG TAATATTAAT TGAATTGAAG TAAATGAAAA GATAGTAATA GAAGACCAAC 111910 .......... .......... .......... .......... .......... .......... 137 TGTGTGGAAC TACTTTGATG AGGTTTAAAA AACTAGGTCC AAAGTTAAAA CAATTGAGGG 111850 .......... .......... .......... .......... .......... .......... 137 GATGAACTGG AAAGGTTTAT TTATAGCATC CAAGTGTGTT GCTAACAATG GTTTTTCACT 111790 .......... .......... .......... .......... .......... .......... 137 GCTACAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 111730 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 190 AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAGGT 111670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAG.. 248 GTCTATTTGA TGTTGCTAGA GCAGATAATT ATGATTTTTT TCACACACAT ATAAATGCCT 111610 .......... .......... .......... .......... .......... .......... 248 TGAACAGACG TAATTGTCGT TTGCTTTTGC AGGTTTAAGT ATAGGAAGAG GCAGAGTGTA 111550 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTTTAAGT ATAGGAAGAG GCAGAGTGTA 276 ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 111490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 336 TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 111430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 396 GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 111370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 456 TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 111310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 516 AGTGGGAGTG GTGGGTTCAA TTTCGAATTT CATTTGTAGA TCCTTAGTTT ATGATGTAGT 111250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGAGTG GTGGGTTCAA TTTCGAATTT CATTTGTAGA TCCTTAGTTT ATGATGTAGT 576 CAATATTAAG GTGTAATTTT GTATCA 111224 |||||||||| |||||||||| |||||| CAATATTAAG GTGTAATTTT GTATCA 602 hqPGS_C08SLm0006K11.1-_SGN-E351355+ (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) ******************************************************************************** EST sequence 105 +strand 439 n (File: SGN-E342606+) 1 TTGAATAGCT CGTGTGGGAA GAATCCATCT CCAAGAATCA ATAAACAAAA TAATGAGCGC 61 ATAGATAATT TCTTCATTTG TTTGACAAGT AGGTGCTGAA AACAAGCTTC TTGTGCAGAT 121 TCACGTCAAG GGATTATTAT TTTTATTTAG ATATAGAAGA ATTGTGGAGG GAGGAAGGGC 181 GGGCTCAGCG GGCAGAGACT AGAGAGTGGG AGTGGTGGGT TCAATTTCGA ATTTCATTTG 241 TAGATCCTTA GTTTATGATG TAGTCAATAT TAAGGTGTAA TTTTGTATCA TATATGATGA 301 TCATGAGATG TGTGTTCAAT AAAGCTTTTA GCTTCACAAG CATCCCTCAA GCCTAACATA 361 TTTGTGGCCG TTGCCAAATT GCCATTGCAT AAATGGAGAG ATGGATCTGG TACTGTTGGA 421 CCCAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 112112 to 110339): Exon 1 111512 111089 ( 424 n); cDNA 1 425 ( 425 n); score: 0.994 PPA cDNA 426 439 MATCH C08SLm0006K11.1- SGN-E342606+ 0.994 424 0.966 C PGS_C08SLm0006K11.1-_SGN-E342606+ (111512 111089) Alignment (genomic DNA sequence = upper lines): TTGAATAGCT CGTGTGGGAA GAATCCATCT CCAAGAATCA ATAAACAAAA TAATGAGCGC 111453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATAGCT CGTGTGGGAA GAATCCATCT CCAAGAATCA ATAAACAAAA TAATGAGCGC 60 ATAGATAATT TCTTCATTTG TTTGACAAGT AGGTGCTGAA AACAAGCTTC TTGTGCAGAT 111393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATAATT TCTTCATTTG TTTGACAAGT AGGTGCTGAA AACAAGCTTC TTGTGCAGAT 120 TCACGTCAAG GGATTATTAT TTTTATTTAG ATATAGAAG- ATTGTGGAGG GAGGAAGGGC 111334 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCACGTCAAG GGATTATTAT TTTTATTTAG ATATAGAAGA ATTGTGGAGG GAGGAAGGGC 180 GGGCTCAGCG GGCAGAGACT AGAGAGTGGG AGTGGTGGGT TCAATTTCGA ATTTCATTTG 111274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTCAGCG GGCAGAGACT AGAGAGTGGG AGTGGTGGGT TCAATTTCGA ATTTCATTTG 240 TAGATCCTTA GTTTATGATG TAGTCAATAT TAAGGTGTAA TTTTGTATCA TATATGATGA 111214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCCTTA GTTTATGATG TAGTCAATAT TAAGGTGTAA TTTTGTATCA TATATGATGA 300 TCATGAGATG TGTGTTCAAT AAAGCTTTTA GCTTCACAAG CATCCCTCAA GCCTAACATA 111154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGAGATG TGTGTTCAAT AAAGCTTTTA GCTTCACAAG CATCCCTCAA GCCTAACATA 360 TTTGTGGCCG TTGCCAAATT GCCATTGCAT AAATGGAGAG ATGGATCTGG TACTGTTGGA 111094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGGCCG TTGCCAAATT GCCATTGCAT AAATGGAGAG ATGGATCTGG TACTGTTGGA 420 CCCAA 111089 ||||| CCCAA 425 hqPGS_C08SLm0006K11.1-_SGN-E342606+ (111512 111089) ******************************************************************************** EST sequence 111 +strand 648 n (File: SGN-E307039+) 1 GAGTTCGAAG CTCCGAAAGA AGTGAGATTG AAAACCAACA GACCAGGAGA TAAAGCTCAT 61 CCAGTGCGAA GAGCACCCAG CTTTAGTGGG CCTTTAATGC TTCCAAATCG AGCTTCAGGA 121 AATAGTTTAT CAGCTCCGAT TAAATCATCT GGGGGATTCA AAGATTCCTT GGATGACAAG 181 TCGAAGCCGA ACTTGGTCCA AATAAAAGGC CGTTTCTCTG TAACATCAGA AAATGTAGAT 241 CTTGTAAAGG ATATTCCATT ATGTACAGTT CCTCGACGAT CTTCTCAAGG ATCACCACTT 301 AGGAAGTCTG CTAGTGTTGG AGAATGGCTG GTCGAATCTA AACAAATGCC ACCCAGTCAA 361 CCGCCCAAGG AACTTGGCGT TAATAATGTT CCTGCTTCAG TTCTCATGCC TCACTTACAA 421 AATCTCTTTC AACAGACGTC AATTCAACAG GATCTCATTG TAAATCTATT GAGTAGCTTG 481 CAACTATCTG AGGCAGGAGA TTCTTCTCAA AATGGGAAGT TATCTCCCTT ACAGCGCCCA 541 GAGAGCAATG GAATTGTTGA AGCAGCTGTT TCTGAGAGGG AGAAGCTATT ATTAGTCAAA 601 ATATCTGAAC TTCAAGCTAG GATGATTAAT TTGACAGATG AGTTAACT Predicted gene structure (within gDNA segment 114403 to 111412): Exon 1 114113 114095 ( 19 n); cDNA 1 19 ( 19 n); score: 1.000 Intron 1 114094 113632 ( 463 n); Pd: 0.932 (s: 0), Pa: 0.837 (s: 0.95) Exon 2 113631 113498 ( 134 n); cDNA 20 154 ( 135 n); score: 0.981 Intron 2 113497 113363 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 113362 113268 ( 95 n); cDNA 155 249 ( 95 n); score: 1.000 Intron 3 113267 113202 ( 66 n); Pd: 0.994 (s: 1.00), Pa: 0.419 (s: 0) Exon 4 113201 113163 ( 39 n); cDNA 250 288 ( 39 n); score: 1.000 Intron 4 113162 113077 ( 86 n); Pd: 0.878 (s: 0), Pa: 0.990 (s: 1.00) Exon 5 113076 113017 ( 60 n); cDNA 289 348 ( 60 n); score: 1.000 Intron 5 113016 112869 ( 148 n); Pd: 0.943 (s: 1.00), Pa: 0.783 (s: 1.00) Exon 6 112868 112767 ( 102 n); cDNA 349 450 ( 102 n); score: 1.000 Intron 6 112766 112581 ( 186 n); Pd: 0.000 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 7 112580 112529 ( 52 n); cDNA 451 502 ( 52 n); score: 1.000 Intron 7 112528 112423 ( 106 n); Pd: 0.417 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 8 112422 112370 ( 53 n); cDNA 503 555 ( 53 n); score: 1.000 Intron 8 112369 112213 ( 157 n); Pd: 0.992 (s: 1.00), Pa: 0.861 (s: 1.00) Exon 9 112212 112148 ( 65 n); cDNA 556 620 ( 65 n); score: 0.969 Intron 9 112147 112050 ( 98 n); Pd: 0.000 (s: 0.96), Pa: 0.993 (s: 0) Exon 10 112049 112022 ( 28 n); cDNA 621 648 ( 28 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E307039+ 0.992 647 0.998 C PGS_C08SLm0006K11.1-_SGN-E307039+ (114113 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 112022) Alignment (genomic DNA sequence = upper lines): GAGTTCGAAG CTCCGAAAGG TTCTGTACGA CTCATTGTAT TCTTATTCTA CTGTATCTCT 114054 |||||||||| ||||||||| GAGTTCGAAG CTCCGAAAG. .......... .......... .......... .......... 19 TACATTGCGC CAAAGAAAAG CATTGCACCG AAACTTTAAC TAAGAAGCTT TATTACTTTT 113994 .......... .......... .......... .......... .......... .......... 19 CAGGAATCAA ATTGCCTTTC TTTTCATATC ATTTCAACTG TAATAGGGTG AAAGGAAATT 113934 .......... .......... .......... .......... .......... .......... 19 GGTTAGAACT GAATGCTCAA ACTTGGTCTC TCTACTAATA TGGCAGTCCC CAATTTTTTA 113874 .......... .......... .......... .......... .......... .......... 19 AAAATGTTTC TTCATTGGAA CAAAACAGAT TTCCACTGGA GAAGGAATTC TCACAGGAAT 113814 .......... .......... .......... .......... .......... .......... 19 TTTGCTCTAA AGTTAGTGTG TTGGATTCAT TTTATAGAGG CTAAAATCAG TGTGTAAATC 113754 .......... .......... .......... .......... .......... .......... 19 ATCCAATAGC ATTCTAATGT AGTTCATTGT GCTTTATTTG ACCATTTGCA TATATGACTG 113694 .......... .......... .......... .......... .......... .......... 19 TTTATTTGGA CACTGTTATC AATTGAGAAC TTTCAGTGAG GCAACTTATG CTGCTCTTGC 113634 .......... .......... .......... .......... .......... .......... 19 AGAAGTGAGA TTGAAAACCA ACA-ACCAGG AGATAAAGCT CATCCAGTGC GAAGAGCACC 113575 |||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ..AAGTGAGA TTGAAAACCA ACAGACCAGG AGATAAAGCT CATCCAGTGC GAAGAGCACC 77 CAGCTTTAGT GGGCCTTTAA TGCTTCCAAA TCGAGCTTCA GGAAATAGTT TATCAGCTCC 113515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTTAGT GGGCCTTTAA TGCTTCCAAA TCGAGCTTCA GGAAATAGTT TATCAGCTCC 137 GATTAAATCA TCTGGGGGTA TTAATGCTTT CAAGACAAGT TCATTTTTTG CTATTGTGTG 113455 |||||||||| ||||||| GATTAAATCA TCTGGGG... .......... .......... .......... .......... 154 TAAGACCCAC AATGGTTTAT AGAAAAACTC TAGGTGGCAT GCTATTAAAG GCTGACTTCT 113395 .......... .......... .......... .......... .......... .......... 154 CTTTGCAGTA ATGATGATTT TTATTTGTTC AGGATTCAAA GATTCCTTGG ATGACAAGTC 113335 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GATTCAAA GATTCCTTGG ATGACAAGTC 182 GAAGCCGAAC TTGGTCCAAA TAAAAGGCCG TTTCTCTGTA ACATCAGAAA ATGTAGATCT 113275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCGAAC TTGGTCCAAA TAAAAGGCCG TTTCTCTGTA ACATCAGAAA ATGTAGATCT 242 TGTAAAGGTA AATCATATTT TGTCATTTTC TTTCTTTTAG ATCACTATTT GCTAACTTAA 113215 ||||||| TGTAAAG... .......... .......... .......... .......... .......... 249 ATATTTATGT TAGGATATTC CATTATGTAC AGTTCCTCGA CGATCTTCTC AAGTAAGTGG 113155 ||||||| |||||||||| |||||||||| |||||||||| || .......... ...GATATTC CATTATGTAC AGTTCCTCGA CGATCTTCTC AA........ 288 TTTGGTGTTG CCTTCTCAAA ACAACTCAAG TATTTCATTC CTGCTGTATC TTTGACACAA 113095 .......... .......... .......... .......... .......... .......... 288 GATTTCTGTG ATTCACAGGG ATCACCACTT AGGAAGTCTG CTAGTGTTGG AGAATGGCTG 113035 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GG ATCACCACTT AGGAAGTCTG CTAGTGTTGG AGAATGGCTG 330 GTCGAATCTA AACAAATGGT GTGTGTATTG TCCCTTACTT TACAGCTGTA GTTAAGTCAT 112975 |||||||||| |||||||| GTCGAATCTA AACAAATG.. .......... .......... .......... .......... 348 GTGATTATGT TAAAACTTGA GCTCCACCCT GATGGTGCTA TTTTGTCTTA ACCAAGAGAA 112915 .......... .......... .......... .......... .......... .......... 348 AAAGCAAAGA ACTTGTTGTA ATACTGCATT TTTCATAAAT TTTCAGCCAC CCAGTCAACC 112855 |||| |||||||||| .......... .......... .......... .......... ......CCAC CCAGTCAACC 362 GCCCAAGGAA CTTGGCGTTA ATAATGTTCC TGCTTCAGTT CTCATGCCTC ACTTACAAAA 112795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAAGGAA CTTGGCGTTA ATAATGTTCC TGCTTCAGTT CTCATGCCTC ACTTACAAAA 422 TCTCTTTCAA CAGACGTCAA TTCAACAGGT AAGGCATCAG TGTATGGTAA AGATGCAAGA 112735 |||||||||| |||||||||| |||||||| TCTCTTTCAA CAGACGTCAA TTCAACAG.. .......... .......... .......... 450 TCCGTGTCCC CCCTCCCCCC CCACCCACCC AAACGCGCAC ACAGGAAAAA ATACAGAACA 112675 .......... .......... .......... .......... .......... .......... 450 AAAACAAGAA AAGAAATGTT AAATTCAGGA TTAACTAGTC CGTTTCTATT TCTCGGTTGT 112615 .......... .......... .......... .......... .......... .......... 450 TCTAACGCTT AATTTCTACT GCATTTGTTA TCAGGATCTC ATTGTAAATC TATTGAGTAG 112555 |||||| |||||||||| |||||||||| .......... .......... .......... ....GATCTC ATTGTAAATC TATTGAGTAG 476 CTTGCAACTA TCTGAGGCAG GAGATTGTAA GTATGAGGAA GAAATGTCTG ATGTCCTTAT 112495 |||||||||| |||||||||| |||||| CTTGCAACTA TCTGAGGCAG GAGATT.... .......... .......... .......... 502 GTAAAGAAAT ATGTTCTACC AATAGTAACA TGGATTCAGA TTTACTTAGA TTGAAATTTC 112435 .......... .......... .......... .......... .......... .......... 502 TTGTTCTTTC AGCTTCTCAA AATGGGAAGT TATCTCCCTT ACAGCGCCCA GAGAGCAATG 112375 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CTTCTCAA AATGGGAAGT TATCTCCCTT ACAGCGCCCA GAGAGCAATG 550 GAATTGTAAG TACATGTCTT TGCTTTGAAA ATTTGCTTAG CTTTAAGACT TTGAGAAAGT 112315 ||||| GAATT..... .......... .......... .......... .......... .......... 555 GCAAATGTTT ACATGGAGCT GTATAAACAT GTCTCTTATT GGGAACTTGT CTTTTATCAC 112255 .......... .......... .......... .......... .......... .......... 555 ATGGCAACCA TTCATTTTGA TGAAGACACT TCCGTTTTAC AGGTTGAAGC AGCTGTTTCT 112195 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGAAGC AGCTGTTTCT 573 GAGAGGGAGA AGCTATTATT AGTCAAAATA TCTGAGCTTC AGGCTAGGTC AGTCCACTGT 112135 |||||||||| |||||||||| |||||||||| ||||| |||| | ||||| GAGAGGGAGA AGCTATTATT AGTCAAAATA TCTGAACTTC AAGCTAG... .......... 620 GGACGCAAAT CAACTGTGGT GCATTTTTCT CACAGTTCTA TGTGGGACTT CTAATTGAAG 112075 .......... .......... .......... .......... .......... .......... 620 AACTGATCTT CTCTCTACTT TGCAGGATGA TTAATTTGAC AGATGAGTTA ACT 112022 ||||| |||||||||| |||||||||| ||| .......... .......... .....GATGA TTAATTTGAC AGATGAGTTA ACT 648 hqPGS_C08SLm0006K11.1-_SGN-E307039+ (113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 112022) ******************************************************************************** EST sequence 40 -strand 565 n (File: SGN-E329553-) 1 AGGTCCAAAG TTAAAACAAT TGAGGGGATG AACTGGAAAG GTTTATTTAT AGCATCCAAG 61 TGTGTTGCTA ACAATGGTTT TTCACTGCTA CAGTTGCAAC AGCGGTTAAA TGCCATGTCA 121 AGTTGCGGAG AGGATGGGGA CAGAAGAGAG TTGGAATCCT GATGACAATG ATACGTTTCA 181 TATATAAACA CCGTGTATAT TCAGGTGTCT ATTTGATGTT GCTAGAGCAG ATAATTATGA 241 TTTTTTTCAC ACACATATAA ATGCCTTGAA CAGACGTAAT TGTCGTTTGC TTTTGCAGGT 301 TTAAGTATAG GAAGAGGCAG AGTGTAATTA TTCTTATGTC ACTGAATCAT GCACTTGTCC 361 TTGTTGAATA GCTCGTGTGG GAAGAATCCA TCTCCAAGAA TCAATAAACA AAATAATGAG 421 CGCATAGATA ATTTCTTCAT TTGTTTGACA AGTAGGTGCT GAAAACAAGC TTCTTGTGCA 481 GATTCACGTC AAGGGATTAT TATTTTTATT TAGATATAGA AGATTGTGGA GGGAGGAAGG 541 GCGGGCTCAG CGGGCAGAGA CTAGA Predicted gene structure (within gDNA segment 112485 to 110711): Exon 1 111875 111311 ( 565 n); cDNA 1 565 ( 565 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E329553- 1.000 565 1.000 C PGS_C08SLm0006K11.1-_SGN-E329553- (111875 111311) Alignment (genomic DNA sequence = upper lines): AGGTCCAAAG TTAAAACAAT TGAGGGGATG AACTGGAAAG GTTTATTTAT AGCATCCAAG 111816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCCAAAG TTAAAACAAT TGAGGGGATG AACTGGAAAG GTTTATTTAT AGCATCCAAG 60 TGTGTTGCTA ACAATGGTTT TTCACTGCTA CAGTTGCAAC AGCGGTTAAA TGCCATGTCA 111756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTGCTA ACAATGGTTT TTCACTGCTA CAGTTGCAAC AGCGGTTAAA TGCCATGTCA 120 AGTTGCGGAG AGGATGGGGA CAGAAGAGAG TTGGAATCCT GATGACAATG ATACGTTTCA 111696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCGGAG AGGATGGGGA CAGAAGAGAG TTGGAATCCT GATGACAATG ATACGTTTCA 180 TATATAAACA CCGTGTATAT TCAGGTGTCT ATTTGATGTT GCTAGAGCAG ATAATTATGA 111636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATAAACA CCGTGTATAT TCAGGTGTCT ATTTGATGTT GCTAGAGCAG ATAATTATGA 240 TTTTTTTCAC ACACATATAA ATGCCTTGAA CAGACGTAAT TGTCGTTTGC TTTTGCAGGT 111576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTCAC ACACATATAA ATGCCTTGAA CAGACGTAAT TGTCGTTTGC TTTTGCAGGT 300 TTAAGTATAG GAAGAGGCAG AGTGTAATTA TTCTTATGTC ACTGAATCAT GCACTTGTCC 111516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTATAG GAAGAGGCAG AGTGTAATTA TTCTTATGTC ACTGAATCAT GCACTTGTCC 360 TTGTTGAATA GCTCGTGTGG GAAGAATCCA TCTCCAAGAA TCAATAAACA AAATAATGAG 111456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAATA GCTCGTGTGG GAAGAATCCA TCTCCAAGAA TCAATAAACA AAATAATGAG 420 CGCATAGATA ATTTCTTCAT TTGTTTGACA AGTAGGTGCT GAAAACAAGC TTCTTGTGCA 111396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCATAGATA ATTTCTTCAT TTGTTTGACA AGTAGGTGCT GAAAACAAGC TTCTTGTGCA 480 GATTCACGTC AAGGGATTAT TATTTTTATT TAGATATAGA AGATTGTGGA GGGAGGAAGG 111336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCACGTC AAGGGATTAT TATTTTTATT TAGATATAGA AGATTGTGGA GGGAGGAAGG 540 GCGGGCTCAG CGGGCAGAGA CTAGA 111311 |||||||||| |||||||||| ||||| GCGGGCTCAG CGGGCAGAGA CTAGA 565 hqPGS_C08SLm0006K11.1-_SGN-E329553- (111875 111311) ******************************************************************************** EST sequence 123 +strand 641 n (File: SGN-E207841+) 1 CAAGAGTAGA ACTCAAACAC CAAAAGCTCG TCAAAGTCAG AGTGGACCAC TTATGGCTGG 61 CGCTGTACTT AGTCACTCGG CATCAGAAAG AGTTCGAAGC TCCGAAAGAA GTGAGATTGA 121 AAACCAACAA CCAGGAGATA AAGCTCATCC AGTGCGAAGA GCACCCAGCT TTAGTGGGCC 181 TTTAATGCTT CCAAATCGAG CTTCAGGAAA TAGTTTATCA GCTCCGATTA AATCATCTGG 241 GGGATTCAAA GATTCCTTGG ATGACAAGTC GAAGCCGAAC TTGGTCCAAA TAAAAGGCCG 301 TTTCTCTGTA ACATCAGAAA ATGTAGATCT TGTAAAGGAT ATTCCATTAT GTACAGTTCC 361 TCGACGATCT TCTCAAGGAT CACCACTTAA GAAGTCTGCT AGTGTTGGAG AATGGCTGGT 421 CGAATCTAAA CAAATGCCAC CCAGTCAACC GCCCAAGGAA CTTGGCGTTA ATAATGTTCC 481 TGCTTCAGTT CTCATGCCTC ACTTACAAAA TCTCTTTCAA CAGACGTCAA TTCAACAGGA 541 TCTCATTGTA AATCTATTGA GTAGCTTGCA ACTATCTGAG GCAGGAGATT CTTCTCAAAA 601 TGGGAAGTTA TCTTCCTTAC AGCGCCCAGA GAGCAATGGA A Predicted gene structure (within gDNA segment 114802 to 111762): Exon 1 114202 114095 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 114094 113632 ( 463 n); Pd: 0.932 (s: 1.00), Pa: 0.837 (s: 1.00) Exon 2 113631 113498 ( 134 n); cDNA 109 242 ( 134 n); score: 1.000 Intron 2 113497 113363 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 113362 113268 ( 95 n); cDNA 243 337 ( 95 n); score: 1.000 Intron 3 113267 113202 ( 66 n); Pd: 0.994 (s: 1.00), Pa: 0.419 (s: 0) Exon 4 113201 113163 ( 39 n); cDNA 338 376 ( 39 n); score: 1.000 Intron 4 113162 113077 ( 86 n); Pd: 0.878 (s: 0), Pa: 0.990 (s: 0.98) Exon 5 113076 113017 ( 60 n); cDNA 377 436 ( 60 n); score: 0.983 Intron 5 113016 112869 ( 148 n); Pd: 0.943 (s: 0.98), Pa: 0.783 (s: 1.00) Exon 6 112868 112767 ( 102 n); cDNA 437 538 ( 102 n); score: 1.000 Intron 6 112766 112581 ( 186 n); Pd: 0.000 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 7 112580 112529 ( 52 n); cDNA 539 590 ( 52 n); score: 1.000 Intron 7 112528 112423 ( 106 n); Pd: 0.417 (s: 1.00), Pa: 0.989 (s: 0.98) Exon 8 112422 112372 ( 51 n); cDNA 591 641 ( 51 n); score: 0.980 MATCH C08SLm0006K11.1- SGN-E207841+ 0.997 641 1.000 C PGS_C08SLm0006K11.1-_SGN-E207841+ (114202 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112372) Alignment (genomic DNA sequence = upper lines): CAAGAGTAGA ACTCAAACAC CAAAAGCTCG TCAAAGTCAG AGTGGACCAC TTATGGCTGG 114143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGTAGA ACTCAAACAC CAAAAGCTCG TCAAAGTCAG AGTGGACCAC TTATGGCTGG 60 CGCTGTACTT AGTCACTCGG CATCAGAAAG AGTTCGAAGC TCCGAAAGGT TCTGTACGAC 114083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CGCTGTACTT AGTCACTCGG CATCAGAAAG AGTTCGAAGC TCCGAAAG.. .......... 108 TCATTGTATT CTTATTCTAC TGTATCTCTT ACATTGCGCC AAAGAAAAGC ATTGCACCGA 114023 .......... .......... .......... .......... .......... .......... 108 AACTTTAACT AAGAAGCTTT ATTACTTTTC AGGAATCAAA TTGCCTTTCT TTTCATATCA 113963 .......... .......... .......... .......... .......... .......... 108 TTTCAACTGT AATAGGGTGA AAGGAAATTG GTTAGAACTG AATGCTCAAA CTTGGTCTCT 113903 .......... .......... .......... .......... .......... .......... 108 CTACTAATAT GGCAGTCCCC AATTTTTTAA AAATGTTTCT TCATTGGAAC AAAACAGATT 113843 .......... .......... .......... .......... .......... .......... 108 TCCACTGGAG AAGGAATTCT CACAGGAATT TTGCTCTAAA GTTAGTGTGT TGGATTCATT 113783 .......... .......... .......... .......... .......... .......... 108 TTATAGAGGC TAAAATCAGT GTGTAAATCA TCCAATAGCA TTCTAATGTA GTTCATTGTG 113723 .......... .......... .......... .......... .......... .......... 108 CTTTATTTGA CCATTTGCAT ATATGACTGT TTATTTGGAC ACTGTTATCA ATTGAGAACT 113663 .......... .......... .......... .......... .......... .......... 108 TTCAGTGAGG CAACTTATGC TGCTCTTGCA GAAGTGAGAT TGAAAACCAA CAACCAGGAG 113603 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AAGTGAGAT TGAAAACCAA CAACCAGGAG 137 ATAAAGCTCA TCCAGTGCGA AGAGCACCCA GCTTTAGTGG GCCTTTAATG CTTCCAAATC 113543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGCTCA TCCAGTGCGA AGAGCACCCA GCTTTAGTGG GCCTTTAATG CTTCCAAATC 197 GAGCTTCAGG AAATAGTTTA TCAGCTCCGA TTAAATCATC TGGGGGTATT AATGCTTTCA 113483 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGCTTCAGG AAATAGTTTA TCAGCTCCGA TTAAATCATC TGGGG..... .......... 242 AGACAAGTTC ATTTTTTGCT ATTGTGTGTA AGACCCACAA TGGTTTATAG AAAAACTCTA 113423 .......... .......... .......... .......... .......... .......... 242 GGTGGCATGC TATTAAAGGC TGACTTCTCT TTGCAGTAAT GATGATTTTT ATTTGTTCAG 113363 .......... .......... .......... .......... .......... .......... 242 GATTCAAAGA TTCCTTGGAT GACAAGTCGA AGCCGAACTT GGTCCAAATA AAAGGCCGTT 113303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAAAGA TTCCTTGGAT GACAAGTCGA AGCCGAACTT GGTCCAAATA AAAGGCCGTT 302 TCTCTGTAAC ATCAGAAAAT GTAGATCTTG TAAAGGTAAA TCATATTTTG TCATTTTCTT 113243 |||||||||| |||||||||| |||||||||| ||||| TCTCTGTAAC ATCAGAAAAT GTAGATCTTG TAAAG..... .......... .......... 337 TCTTTTAGAT CACTATTTGC TAACTTAAAT ATTTATGTTA GGATATTCCA TTATGTACAG 113183 ||||||||| |||||||||| .......... .......... .......... .......... .GATATTCCA TTATGTACAG 356 TTCCTCGACG ATCTTCTCAA GTAAGTGGTT TGGTGTTGCC TTCTCAAAAC AACTCAAGTA 113123 |||||||||| |||||||||| TTCCTCGACG ATCTTCTCAA .......... .......... .......... .......... 376 TTTCATTCCT GCTGTATCTT TGACACAAGA TTTCTGTGAT TCACAGGGAT CACCACTTAG 113063 |||| ||||||||| .......... .......... .......... .......... ......GGAT CACCACTTAA 390 GAAGTCTGCT AGTGTTGGAG AATGGCTGGT CGAATCTAAA CAAATGGTGT GTGTATTGTC 113003 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGTCTGCT AGTGTTGGAG AATGGCTGGT CGAATCTAAA CAAATG.... .......... 436 CCTTACTTTA CAGCTGTAGT TAAGTCATGT GATTATGTTA AAACTTGAGC TCCACCCTGA 112943 .......... .......... .......... .......... .......... .......... 436 TGGTGCTATT TTGTCTTAAC CAAGAGAAAA AGCAAAGAAC TTGTTGTAAT ACTGCATTTT 112883 .......... .......... .......... .......... .......... .......... 436 TCATAAATTT TCAGCCACCC AGTCAACCGC CCAAGGAACT TGGCGTTAAT AATGTTCCTG 112823 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CCACCC AGTCAACCGC CCAAGGAACT TGGCGTTAAT AATGTTCCTG 482 CTTCAGTTCT CATGCCTCAC TTACAAAATC TCTTTCAACA GACGTCAATT CAACAGGTAA 112763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTTCAGTTCT CATGCCTCAC TTACAAAATC TCTTTCAACA GACGTCAATT CAACAG.... 538 GGCATCAGTG TATGGTAAAG ATGCAAGATC CGTGTCCCCC CTCCCCCCCC ACCCACCCAA 112703 .......... .......... .......... .......... .......... .......... 538 ACGCGCACAC AGGAAAAAAT ACAGAACAAA AACAAGAAAA GAAATGTTAA ATTCAGGATT 112643 .......... .......... .......... .......... .......... .......... 538 AACTAGTCCG TTTCTATTTC TCGGTTGTTC TAACGCTTAA TTTCTACTGC ATTTGTTATC 112583 .......... .......... .......... .......... .......... .......... 538 AGGATCTCAT TGTAAATCTA TTGAGTAGCT TGCAACTATC TGAGGCAGGA GATTGTAAGT 112523 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ..GATCTCAT TGTAAATCTA TTGAGTAGCT TGCAACTATC TGAGGCAGGA GATT...... 590 ATGAGGAAGA AATGTCTGAT GTCCTTATGT AAAGAAATAT GTTCTACCAA TAGTAACATG 112463 .......... .......... .......... .......... .......... .......... 590 GATTCAGATT TACTTAGATT GAAATTTCTT GTTCTTTCAG CTTCTCAAAA TGGGAAGTTA 112403 |||||||||| |||||||||| .......... .......... .......... .......... CTTCTCAAAA TGGGAAGTTA 610 TCTCCCTTAC AGCGCCCAGA GAGCAATGGA A 112372 ||| |||||| |||||||||| |||||||||| | TCTTCCTTAC AGCGCCCAGA GAGCAATGGA A 641 hqPGS_C08SLm0006K11.1-_SGN-E207841+ (114202 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112372) ******************************************************************************** EST sequence 110 +strand 358 n (File: SGN-E307137+) 1 GCACCCACCT TTAGTGGGCC TTTAATGCTT CCAAATCGAG CTTCAGGAAA TAGTTTATCA 61 GCTCCGATTA AATCATCTGG GGGATTCAAA GATTCCTTGG ATGACAAGTC GAAGCCGAAC 121 TTGGTCCAAA TAAAAAGCCG TTTCTCTGTA ACATCAGAAA ATGTAGATCT TGTAAAGGAT 181 ATTCCATTAT GTACAGGTCC TCGACGATCT TCTCAAGGAT CACCACTTAG GAAGTCTGCT 241 AATGTTGGAG AATGGCTGGT TGAATCTAAA CAAATGCCAC CCAGTCAACC GCCCAAAGAA 301 CTTGGCGTTA ATAATGTTCC TGCTTAAGTT CTCATGCCTC ACTTACAAAA TCTCTTTC Predicted gene structure (within gDNA segment 114251 to 112177): Exon 1 113579 113498 ( 82 n); cDNA 1 82 ( 82 n); score: 0.988 Intron 1 113497 113363 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 113362 113268 ( 95 n); cDNA 83 177 ( 95 n); score: 0.989 Intron 2 113267 113202 ( 66 n); Pd: 0.994 (s: 0.98), Pa: 0.419 (s: 0) Exon 3 113201 113163 ( 39 n); cDNA 178 216 ( 39 n); score: 0.974 Intron 3 113162 113077 ( 86 n); Pd: 0.878 (s: 0), Pa: 0.990 (s: 0.96) Exon 4 113076 113017 ( 60 n); cDNA 217 276 ( 60 n); score: 0.967 Intron 4 113016 112869 ( 148 n); Pd: 0.943 (s: 0.96), Pa: 0.783 (s: 0.96) Exon 5 112868 112787 ( 82 n); cDNA 277 358 ( 82 n); score: 0.976 MATCH C08SLm0006K11.1- SGN-E307137+ 0.981 358 1.000 C PGS_C08SLm0006K11.1-_SGN-E307137+ (113579 113498,113362 113268,113201 113163,113076 113017,112868 112787) Alignment (genomic DNA sequence = upper lines): GCACCCAGCT TTAGTGGGCC TTTAATGCTT CCAAATCGAG CTTCAGGAAA TAGTTTATCA 113520 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCCACCT TTAGTGGGCC TTTAATGCTT CCAAATCGAG CTTCAGGAAA TAGTTTATCA 60 GCTCCGATTA AATCATCTGG GGGTATTAAT GCTTTCAAGA CAAGTTCATT TTTTGCTATT 113460 |||||||||| |||||||||| || GCTCCGATTA AATCATCTGG GG........ .......... .......... .......... 82 GTGTGTAAGA CCCACAATGG TTTATAGAAA AACTCTAGGT GGCATGCTAT TAAAGGCTGA 113400 .......... .......... .......... .......... .......... .......... 82 CTTCTCTTTG CAGTAATGAT GATTTTTATT TGTTCAGGAT TCAAAGATTC CTTGGATGAC 113340 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT TCAAAGATTC CTTGGATGAC 105 AAGTCGAAGC CGAACTTGGT CCAAATAAAA GGCCGTTTCT CTGTAACATC AGAAAATGTA 113280 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAGTCGAAGC CGAACTTGGT CCAAATAAAA AGCCGTTTCT CTGTAACATC AGAAAATGTA 165 GATCTTGTAA AGGTAAATCA TATTTTGTCA TTTTCTTTCT TTTAGATCAC TATTTGCTAA 113220 |||||||||| || GATCTTGTAA AG........ .......... .......... .......... .......... 177 CTTAAATATT TATGTTAGGA TATTCCATTA TGTACAGTTC CTCGACGATC TTCTCAAGTA 113160 || |||||||||| ||||||| || |||||||||| ||||||| .......... ........GA TATTCCATTA TGTACAGGTC CTCGACGATC TTCTCAA... 216 AGTGGTTTGG TGTTGCCTTC TCAAAACAAC TCAAGTATTT CATTCCTGCT GTATCTTTGA 113100 .......... .......... .......... .......... .......... .......... 216 CACAAGATTT CTGTGATTCA CAGGGATCAC CACTTAGGAA GTCTGCTAGT GTTGGAGAAT 113040 ||||||| |||||||||| |||||||| | |||||||||| .......... .......... ...GGATCAC CACTTAGGAA GTCTGCTAAT GTTGGAGAAT 253 GGCTGGTCGA ATCTAAACAA ATGGTGTGTG TATTGTCCCT TACTTTACAG CTGTAGTTAA 112980 ||||||| || |||||||||| ||| GGCTGGTTGA ATCTAAACAA ATG....... .......... .......... .......... 276 GTCATGTGAT TATGTTAAAA CTTGAGCTCC ACCCTGATGG TGCTATTTTG TCTTAACCAA 112920 .......... .......... .......... .......... .......... .......... 276 GAGAAAAAGC AAAGAACTTG TTGTAATACT GCATTTTTCA TAAATTTTCA GCCACCCAGT 112860 ||||||||| .......... .......... .......... .......... .......... .CCACCCAGT 285 CAACCGCCCA AGGAACTTGG CGTTAATAAT GTTCCTGCTT CAGTTCTCAT GCCTCACTTA 112800 |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAACCGCCCA AAGAACTTGG CGTTAATAAT GTTCCTGCTT AAGTTCTCAT GCCTCACTTA 345 CAAAATCTCT TTC 112787 |||||||||| ||| CAAAATCTCT TTC 358 hqPGS_C08SLm0006K11.1-_SGN-E307137+ (113579 113498,113362 113268,113201 113163,113076 113017,112868 112787) ******************************************************************************** EST sequence 132 +strand 417 n (File: SGN-E320635+) 1 AGAGTTGCCA CCCCTAACCT CAGACAGGGA TGTCTTACCA GCCAAGAGTA GAACTCAAAC 61 ACCAAAAGCT CGTCAAAGTC AGAGTGGACC ACTTATGGCT GGCGCTGTAC TTAGTCACTC 121 GGCATCAGAA AGAGTTCGAA GCTCCGAAAG AAGTGAGATT GAAAACCAAC AACCAGGAGA 181 TAAAGCTCAT CCAGTGCGAA GAGCACCCAG CTTTAGTGGG CCTTTAATGC TTCCAAATCG 241 AGCTTCAGGA AATAGTTTAT CAGCTCCGAT TAAATCATCT GGGGGATTCA AAGATTCCTT 301 GGATGACAAG TCGAAGCCGA ACTTGGTCCA AATAAAAGGC CGTTTCTCTG TAACATCAGA 361 AAATGTAGAT CTTGTAAAGG ATATTCCATT ATGTACAGTT CCTCGACGAT CTTCTCA Predicted gene structure (within gDNA segment 114844 to 112554): Exon 1 114244 114095 ( 150 n); cDNA 1 150 ( 150 n); score: 1.000 Intron 1 114094 113632 ( 463 n); Pd: 0.932 (s: 1.00), Pa: 0.837 (s: 1.00) Exon 2 113631 113498 ( 134 n); cDNA 151 284 ( 134 n); score: 1.000 Intron 2 113497 113363 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 113362 113268 ( 95 n); cDNA 285 379 ( 95 n); score: 1.000 Intron 3 113267 113202 ( 66 n); Pd: 0.994 (s: 1.00), Pa: 0.419 (s: 0) Exon 4 113201 113164 ( 38 n); cDNA 380 417 ( 38 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E320635+ 1.000 417 1.000 C PGS_C08SLm0006K11.1-_SGN-E320635+ (114244 114095,113631 113498,113362 113268,113201 113164) Alignment (genomic DNA sequence = upper lines): AGAGTTGCCA CCCCTAACCT CAGACAGGGA TGTCTTACCA GCCAAGAGTA GAACTCAAAC 114185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTGCCA CCCCTAACCT CAGACAGGGA TGTCTTACCA GCCAAGAGTA GAACTCAAAC 60 ACCAAAAGCT CGTCAAAGTC AGAGTGGACC ACTTATGGCT GGCGCTGTAC TTAGTCACTC 114125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAAAGCT CGTCAAAGTC AGAGTGGACC ACTTATGGCT GGCGCTGTAC TTAGTCACTC 120 GGCATCAGAA AGAGTTCGAA GCTCCGAAAG GTTCTGTACG ACTCATTGTA TTCTTATTCT 114065 |||||||||| |||||||||| |||||||||| GGCATCAGAA AGAGTTCGAA GCTCCGAAAG .......... .......... .......... 150 ACTGTATCTC TTACATTGCG CCAAAGAAAA GCATTGCACC GAAACTTTAA CTAAGAAGCT 114005 .......... .......... .......... .......... .......... .......... 150 TTATTACTTT TCAGGAATCA AATTGCCTTT CTTTTCATAT CATTTCAACT GTAATAGGGT 113945 .......... .......... .......... .......... .......... .......... 150 GAAAGGAAAT TGGTTAGAAC TGAATGCTCA AACTTGGTCT CTCTACTAAT ATGGCAGTCC 113885 .......... .......... .......... .......... .......... .......... 150 CCAATTTTTT AAAAATGTTT CTTCATTGGA ACAAAACAGA TTTCCACTGG AGAAGGAATT 113825 .......... .......... .......... .......... .......... .......... 150 CTCACAGGAA TTTTGCTCTA AAGTTAGTGT GTTGGATTCA TTTTATAGAG GCTAAAATCA 113765 .......... .......... .......... .......... .......... .......... 150 GTGTGTAAAT CATCCAATAG CATTCTAATG TAGTTCATTG TGCTTTATTT GACCATTTGC 113705 .......... .......... .......... .......... .......... .......... 150 ATATATGACT GTTTATTTGG ACACTGTTAT CAATTGAGAA CTTTCAGTGA GGCAACTTAT 113645 .......... .......... .......... .......... .......... .......... 150 GCTGCTCTTG CAGAAGTGAG ATTGAAAACC AACAACCAGG AGATAAAGCT CATCCAGTGC 113585 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...AAGTGAG ATTGAAAACC AACAACCAGG AGATAAAGCT CATCCAGTGC 197 GAAGAGCACC CAGCTTTAGT GGGCCTTTAA TGCTTCCAAA TCGAGCTTCA GGAAATAGTT 113525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGCACC CAGCTTTAGT GGGCCTTTAA TGCTTCCAAA TCGAGCTTCA GGAAATAGTT 257 TATCAGCTCC GATTAAATCA TCTGGGGGTA TTAATGCTTT CAAGACAAGT TCATTTTTTG 113465 |||||||||| |||||||||| ||||||| TATCAGCTCC GATTAAATCA TCTGGGG... .......... .......... .......... 284 CTATTGTGTG TAAGACCCAC AATGGTTTAT AGAAAAACTC TAGGTGGCAT GCTATTAAAG 113405 .......... .......... .......... .......... .......... .......... 284 GCTGACTTCT CTTTGCAGTA ATGATGATTT TTATTTGTTC AGGATTCAAA GATTCCTTGG 113345 |||||||| |||||||||| .......... .......... .......... .......... ..GATTCAAA GATTCCTTGG 302 ATGACAAGTC GAAGCCGAAC TTGGTCCAAA TAAAAGGCCG TTTCTCTGTA ACATCAGAAA 113285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACAAGTC GAAGCCGAAC TTGGTCCAAA TAAAAGGCCG TTTCTCTGTA ACATCAGAAA 362 ATGTAGATCT TGTAAAGGTA AATCATATTT TGTCATTTTC TTTCTTTTAG ATCACTATTT 113225 |||||||||| ||||||| ATGTAGATCT TGTAAAG... .......... .......... .......... .......... 379 GCTAACTTAA ATATTTATGT TAGGATATTC CATTATGTAC AGTTCCTCGA CGATCTTCTC 113165 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GATATTC CATTATGTAC AGTTCCTCGA CGATCTTCTC 416 A 113164 | A 417 hqPGS_C08SLm0006K11.1-_SGN-E320635+ (114244 114095,113631 113498,113362 113268,113201 113164) ******************************************************************************** EST sequence 102 +strand 745 n (File: SGN-E338957+) 1 TTCTCTAAGT CATTCAAGGA AATGGTTGCG ATGTGTTTGG TGAAAGATCA AACTAAAAGG 61 CCAACTGCTG AGAAGTTGTT GAAGCATTCA TTTTTCAAAT ATGCTAAGCC CCCAGAGCTT 121 TCTGTAAAAA AACTCTTTGC TGACCTGCCA CCACTTTGGA ATCGAGTTAA AGCTCTACAG 181 CTTAAAGATG CTGCCCAACT AGCTTTGAAG AGAATGCCTT CTTCCGAGCA GGAAGCATTA 241 TCACAGAGTG AGTACCAACG GGGAGTTAGC GCCTGGAACT TTGATTTGGA GGATTTAAAG 301 CTTCAGGCTT CACTGGTACA GGACGATGAT GAAATACAAG AAATTAAGGA AGAAGATGAT 361 ACCATCAAAG CTTATATGAA CTACAAGGAG AAATCTGTTG CCCTACAATA TGCTGGAAAA 421 TCAACCCCTA GAAAAGATTC TATTGCCAGT GAGCAAGAAA GTATTGGTGA AGTGCCAGTA 481 GCTGAATACG AGATCAAGAA GGGAAAAGAT TTGGAGAGCA GTACACCAGA TTCTGATCAT 541 TGGGAGAAAA ATGGACTGAA GAAGAATGCA TCAAAAACAG AGTTGCCACC CCTAACCTCA 601 GACAGGGATG TCTTACCAGC CAAGAGTAGA ACTCANACAC CAAAAGCTCG TCAAAGTCAG 661 AGTGGACCAC TTATGGCTGG CGCTGTACTT AGTCACTCGG CATCANAAAG AGTTCGAAGC 721 TCCGAAAGAA GTGAGATTGA AAACC Predicted gene structure (within gDNA segment 117364 to 113315): Exon 1 116934 116926 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000 Intron 1 116925 116693 ( 233 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 116692 116522 ( 171 n); cDNA 10 180 ( 171 n); score: 1.000 Intron 2 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 116439 116374 ( 66 n); cDNA 181 246 ( 66 n); score: 1.000 Intron 3 116373 115697 ( 677 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 115696 115628 ( 69 n); cDNA 247 315 ( 69 n); score: 1.000 Intron 4 115627 115521 ( 107 n); Pd: 0.620 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 5 115520 115449 ( 72 n); cDNA 316 387 ( 72 n); score: 1.000 Intron 5 115448 115368 ( 81 n); Pd: 0.788 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 6 115367 115306 ( 62 n); cDNA 388 449 ( 62 n); score: 1.000 Intron 6 115305 114374 ( 932 n); Pd: 0.989 (s: 1.00), Pa: 0.584 (s: 1.00) Exon 7 114373 114095 ( 279 n); cDNA 450 728 ( 279 n); score: 0.993 Intron 7 114094 113632 ( 463 n); Pd: 0.932 (s: 0.98), Pa: 0.837 (s: 0) Exon 8 113631 113615 ( 17 n); cDNA 729 745 ( 17 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E338957+ 0.997 745 1.000 C PGS_C08SLm0006K11.1-_SGN-E338957+ (116934 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113615) Alignment (genomic DNA sequence = upper lines): TTCTCTAAGG TAGTAATTCC ATTTTTGGAA TTATTTCATA AGTAGGTATT AAATACTGGT 116875 ||||||||| TTCTCTAAG. .......... .......... .......... .......... .......... 9 TTAATTCGAC TGTACACACC CCCCCCCCCC CCCCAAAAAA AAAAAAAAAG AAAGAAAGAA 116815 .......... .......... .......... .......... .......... .......... 9 AAGTTAGTCG TATCATTTGC ATTTGTACAT GGAGATATTT GTATATGTTG ATCTGCTACG 116755 .......... .......... .......... .......... .......... .......... 9 TGCTTCAATC TTTATTTTGT ATCATGTACG AAGAACAAAA TGGTTTTTAC TTGTCGTAAC 116695 .......... .......... .......... .......... .......... .......... 9 AGTCATTCAA GGAAATGGTT GCGATGTGTT TGGTGAAAGA TCAAACTAAA AGGCCAACTG 116635 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TCATTCAA GGAAATGGTT GCGATGTGTT TGGTGAAAGA TCAAACTAAA AGGCCAACTG 67 CTGAGAAGTT GTTGAAGCAT TCATTTTTCA AATATGCTAA GCCCCCAGAG CTTTCTGTAA 116575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGAAGTT GTTGAAGCAT TCATTTTTCA AATATGCTAA GCCCCCAGAG CTTTCTGTAA 127 AAAAACTCTT TGCTGACCTG CCACCACTTT GGAATCGAGT TAAAGCTCTA CAGGTATTTC 116515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AAAAACTCTT TGCTGACCTG CCACCACTTT GGAATCGAGT TAAAGCTCTA CAG....... 180 ATGGTATCGT TGTTCTAGGG TTGCTTAATT TTCCTACTTA TCATTGTTTA TTGCTGATTG 116455 .......... .......... .......... .......... .......... .......... 180 ATGAAATTAT TGCAGCTTAA AGATGCTGCC CAACTAGCTT TGAAGAGAAT GCCTTCTTCC 116395 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CTTAA AGATGCTGCC CAACTAGCTT TGAAGAGAAT GCCTTCTTCC 225 GAGCAGGAAG CATTATCACA GGTTTGTGAC AATTGTTTCA TCAATGACAG TGTTCATTAG 116335 |||||||||| |||||||||| | GAGCAGGAAG CATTATCACA G......... .......... .......... .......... 246 TTTTGAATGG TTATGCTATC TAAGTTCCCG TGCATTTATT TGTTCCATTA GCTGTAATGC 116275 .......... .......... .......... .......... .......... .......... 246 TATTCTTCTG TGCGCAAAAA TGCCATTCAA CTCTTAAATT AGGTTTCCAT CGTTAATGAG 116215 .......... .......... .......... .......... .......... .......... 246 AAAATGTAAT CAGCCTCTCA ATATGAATTC CAGATCTTTG GATCTCCATT TTTCTCTTTT 116155 .......... .......... .......... .......... .......... .......... 246 GAACTTTGTG CATCCCATGA AAATCAGAGA TATCGAATTG GTAGGTGTAT AATTGCTATT 116095 .......... .......... .......... .......... .......... .......... 246 TATAACTGTC TAATCCATTC TGTTGGTTCT TTATATACTT TTAAAGAATG TTGTACTTTC 116035 .......... .......... .......... .......... .......... .......... 246 TATTCCTGTC TTCTTTGGAC ATGGGGATAG GATGTTGATG ACGTTATCTC TGGTTTCAAA 115975 .......... .......... .......... .......... .......... .......... 246 AGAAAAAGCA AAAAAGATGG GTGACGATGT ACTCAGAATG TTTTGATGTT TTTAGCCCAA 115915 .......... .......... .......... .......... .......... .......... 246 AGGATTGCTT CTGATATTGT GTCTATGGCC CTGTTTATAT CTAAAAGCAA GTAAATGCAT 115855 .......... .......... .......... .......... .......... .......... 246 TTTCCATCAT CTTTTTCCCT TTTTGCAAGT GTTAATGTTG CTTACGCCAG TCCTTCTCTT 115795 .......... .......... .......... .......... .......... .......... 246 TTCACGTTTC TTTATCTGTG GCATGTGAGT GTGAACAAGG TGTGAGTTTC CTTCTTCAAA 115735 .......... .......... .......... .......... .......... .......... 246 ATCTCCCATC TGTTTTAATA TGTTGTTGTT CTTCACAGAG TGAGTACCAA CGGGGAGTTA 115675 || |||||||||| |||||||||| .......... .......... .......... ........AG TGAGTACCAA CGGGGAGTTA 268 GCGCCTGGAA CTTTGATTTG GAGGATTTAA AGCTTCAGGC TTCACTGGTA TATATATGAG 115615 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGCCTGGAA CTTTGATTTG GAGGATTTAA AGCTTCAGGC TTCACTG... .......... 315 AGGCGTCTCT TTATATCTGA TAAAGACGCT CTTTCACTTT TGCTCCATGA ATTTTGCCAT 115555 .......... .......... .......... .......... .......... .......... 315 CCTAAATTTA ATAGTCTCTC GATTTCTGGG GCAGGTACAG GACGATGATG AAATACAAGA 115495 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTACAG GACGATGATG AAATACAAGA 341 AATTAAGGAA GAAGATGATA CCATCAAAGC TTATATGAAC TACAAGGTCT TTGCCAGTCT 115435 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATTAAGGAA GAAGATGATA CCATCAAAGC TTATATGAAC TACAAG.... .......... 387 TTTCTGTGGT GCTTTAGTCA ATTTTCAAGT TACTCAGATC AGCCTTGAAC TGTTCTCCTA 115375 .......... .......... .......... .......... .......... .......... 387 TTTGCAGGAG AAATCTGTTG CCCTACAATA TGCTGGAAAA TCAACCCCTA GAAAAGATTC 115315 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAG AAATCTGTTG CCCTACAATA TGCTGGAAAA TCAACCCCTA GAAAAGATTC 440 TATTGCCAGG TATATTCTTT TTCATTTTGA CCAGCCACAT AGAGTTTGTC GTAGAAAGAT 115255 ||||||||| TATTGCCAG. .......... .......... .......... .......... .......... 449 ATCAAAATGT AGCTGTTAGT AACTTAGTTT GCTAGAGGGA ATGACGCCTT GTTTGAATTT 115195 .......... .......... .......... .......... .......... .......... 449 TGAACTTTTT TTAACTTGAG TTCCTTGAAC TTTTAGGTGT TAGAACTAGT TAAACCATTT 115135 .......... .......... .......... .......... .......... .......... 449 TGGGCCAACT ATTATACTCC CACCATTTAT TTTTCAAAAG TCATACTTTT TTGGTGCGGA 115075 .......... .......... .......... .......... .......... .......... 449 GTTTAAGATG TTAACTTGAC ATATATATTA TATTGATGGA ATAAATATCA AATTAGTGAT 115015 .......... .......... .......... .......... .......... .......... 449 TGTAAAATTA GCATGATACT GAAATATCAT GTTGAAGTTC AAAATTTGGA TACTTGAACA 114955 .......... .......... .......... .......... .......... .......... 449 AATCTTTATC ATAGGAAGTT GTGAAAGACT TATTGTATTA TGGGATGGTG TCAAACATTT 114895 .......... .......... .......... .......... .......... .......... 449 TGAATATCCC GCAATACTAA GCATGTCATA CAAATAGAGG TGCAGGCTGT ATGTGCTTTC 114835 .......... .......... .......... .......... .......... .......... 449 ATGCTAAATA TTGTTCTTAG AGTCCATATT GATGTACTTA AGTTAGTTTG TTCGTATTTA 114775 .......... .......... .......... .......... .......... .......... 449 CGTTAAGGGT AGAAGGGTAG AGGGGTGATC CATTATCCAC TATGCATCAG TAACCTCAGG 114715 .......... .......... .......... .......... .......... .......... 449 TGTTTTTCGG TTCCAAAAAG TAGTTGTCTT ATACATAATA TCCTCTCTTC TGGAGCGTAT 114655 .......... .......... .......... .......... .......... .......... 449 TTTTTTTCCT GTGGAATCAA GTGCAAACCA AATATTCTCA ATATAATATC TTATCTTCTT 114595 .......... .......... .......... .......... .......... .......... 449 CAGAAGATAT AAAACATCAG CATATTTTGT GAGAACAGCT CTCTCCTGGG GAGAACATTA 114535 .......... .......... .......... .......... .......... .......... 449 ATAATAGTTT TGTCATCACC ACGAAAATAT GATAGTTTAG GTAATGCTTA TGCATTGGCT 114475 .......... .......... .......... .......... .......... .......... 449 TAGATTATGT GAGCTTTTAG TTAAAATTTT ATTTTTGGTC AAGCTATGCC TTGGATTATT 114415 .......... .......... .......... .......... .......... .......... 449 ATCATCTCAA TTTTAGTTTT CGTTGAACAT CTTGTGCCCA GTGAGCAAGA AAGTATTGGT 114355 ||||||||| |||||||||| .......... .......... .......... .......... .TGAGCAAGA AAGTATTGGT 468 GAAGTGCCAG TAGCTGAATA CGAGATCAAG AAGGGAAAAG ATTTGGAGAG CAGTACACCA 114295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTGCCAG TAGCTGAATA CGAGATCAAG AAGGGAAAAG ATTTGGAGAG CAGTACACCA 528 GATTCTGATC ATTGGGAGAA AAATGGACTG AAGAAGAATG CATCAAAAAC AGAGTTGCCA 114235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTGATC ATTGGGAGAA AAATGGACTG AAGAAGAATG CATCAAAAAC AGAGTTGCCA 588 CCCCTAACCT CAGACAGGGA TGTCTTACCA GCCAAGAGTA GAACTCAAAC ACCAAAAGCT 114175 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CCCCTAACCT CAGACAGGGA TGTCTTACCA GCCAAGAGTA GAACTCANAC ACCAAAAGCT 648 CGTCAAAGTC AGAGTGGACC ACTTATGGCT GGCGCTGTAC TTAGTCACTC GGCATCAGAA 114115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CGTCAAAGTC AGAGTGGACC ACTTATGGCT GGCGCTGTAC TTAGTCACTC GGCATCANAA 708 AGAGTTCGAA GCTCCGAAAG GTTCTGTACG ACTCATTGTA TTCTTATTCT ACTGTATCTC 114055 |||||||||| |||||||||| AGAGTTCGAA GCTCCGAAAG .......... .......... .......... .......... 728 TTACATTGCG CCAAAGAAAA GCATTGCACC GAAACTTTAA CTAAGAAGCT TTATTACTTT 113995 .......... .......... .......... .......... .......... .......... 728 TCAGGAATCA AATTGCCTTT CTTTTCATAT CATTTCAACT GTAATAGGGT GAAAGGAAAT 113935 .......... .......... .......... .......... .......... .......... 728 TGGTTAGAAC TGAATGCTCA AACTTGGTCT CTCTACTAAT ATGGCAGTCC CCAATTTTTT 113875 .......... .......... .......... .......... .......... .......... 728 AAAAATGTTT CTTCATTGGA ACAAAACAGA TTTCCACTGG AGAAGGAATT CTCACAGGAA 113815 .......... .......... .......... .......... .......... .......... 728 TTTTGCTCTA AAGTTAGTGT GTTGGATTCA TTTTATAGAG GCTAAAATCA GTGTGTAAAT 113755 .......... .......... .......... .......... .......... .......... 728 CATCCAATAG CATTCTAATG TAGTTCATTG TGCTTTATTT GACCATTTGC ATATATGACT 113695 .......... .......... .......... .......... .......... .......... 728 GTTTATTTGG ACACTGTTAT CAATTGAGAA CTTTCAGTGA GGCAACTTAT GCTGCTCTTG 113635 .......... .......... .......... .......... .......... .......... 728 CAGAAGTGAG ATTGAAAACC 113615 ||||||| |||||||||| ...AAGTGAG ATTGAAAACC 745 hqPGS_C08SLm0006K11.1-_SGN-E338957+ (116934 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095) ******************************************************************************** EST sequence 136 +strand 596 n (File: SGN-E330413+) 1 CTTCTGATGA CAATACAGAA TGCCCCTCCT GGACTTGATT ATGACAGAGA CAAAAAATTC 61 TCTAAGTCAT TCAAGGAAAT GGTTGCGATG TGTTTGGTGA AAGATCAAAC TAAAAGGCCA 121 ACTGCTGAGA AGTTGTTGAA GCATTCATTT TTCAAATATG CTAAGCCCCC AGAGCTTTCT 181 GTAAAAAAAC TCTTTGCTGA CCTGCCACCA CTTTGGAATC GAGTTAAAGC TCTACAGCTT 241 AAAGATGCTG CCCAACTAGC TTTGAAGAGA ATGCCTTCTT CCGAGCAGGA AGCATTATCA 301 CAGAGTGAGT ACCAACGGGG AGTTAGCGCC TGGAACTTTG ATTCGGAGGA TTTAAAGCTT 361 CAGGCTTCAC TGGTACAGGA CGATGATGAA ATACAAGAAA TTAAGGAAGA AGATGATACC 421 ATCAAAGCTT ATATGAACTA CAAGGAGAAA TCTGTTGCCC TACAATATGC TGGAAAATCA 481 ACCCCTAGAA AAGATTCTAT TGCCAGTGAG CAAGAAAGTA TTGGTGAAGT GCCAGTAGCT 541 GAATACGAGA TCAAGAAGGG AAAAGATTTG GAGAGCAGTA CACCAGATTC TGATCA Predicted gene structure (within gDNA segment 117591 to 113674): Exon 1 116991 116926 ( 66 n); cDNA 1 66 ( 66 n); score: 1.000 Intron 1 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 116692 116522 ( 171 n); cDNA 67 237 ( 171 n); score: 1.000 Intron 2 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 116439 116374 ( 66 n); cDNA 238 303 ( 66 n); score: 1.000 Intron 3 116373 115697 ( 677 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 4 115696 115628 ( 69 n); cDNA 304 372 ( 69 n); score: 0.986 Intron 4 115627 115521 ( 107 n); Pd: 0.620 (s: 0.98), Pa: 0.975 (s: 1.00) Exon 5 115520 115449 ( 72 n); cDNA 373 444 ( 72 n); score: 1.000 Intron 5 115448 115368 ( 81 n); Pd: 0.788 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 6 115367 115306 ( 62 n); cDNA 445 506 ( 62 n); score: 1.000 Intron 6 115305 114374 ( 932 n); Pd: 0.989 (s: 1.00), Pa: 0.584 (s: 1.00) Exon 7 114373 114284 ( 90 n); cDNA 507 596 ( 90 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E330413+ 0.998 596 1.000 C PGS_C08SLm0006K11.1-_SGN-E330413+ (116991 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114284) Alignment (genomic DNA sequence = upper lines): CTTCTGATGA CAATACAGAA TGCCCCTCCT GGACTTGATT ATGACAGAGA CAAAAAATTC 116932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGATGA CAATACAGAA TGCCCCTCCT GGACTTGATT ATGACAGAGA CAAAAAATTC 60 TCTAAGGTAG TAATTCCATT TTTGGAATTA TTTCATAAGT AGGTATTAAA TACTGGTTTA 116872 |||||| TCTAAG.... .......... .......... .......... .......... .......... 66 ATTCGACTGT ACACACCCCC CCCCCCCCCC CAAAAAAAAA AAAAAAGAAA GAAAGAAAAG 116812 .......... .......... .......... .......... .......... .......... 66 TTAGTCGTAT CATTTGCATT TGTACATGGA GATATTTGTA TATGTTGATC TGCTACGTGC 116752 .......... .......... .......... .......... .......... .......... 66 TTCAATCTTT ATTTTGTATC ATGTACGAAG AACAAAATGG TTTTTACTTG TCGTAACAGT 116692 | .......... .......... .......... .......... .......... .........T 67 CATTCAAGGA AATGGTTGCG ATGTGTTTGG TGAAAGATCA AACTAAAAGG CCAACTGCTG 116632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCAAGGA AATGGTTGCG ATGTGTTTGG TGAAAGATCA AACTAAAAGG CCAACTGCTG 127 AGAAGTTGTT GAAGCATTCA TTTTTCAAAT ATGCTAAGCC CCCAGAGCTT TCTGTAAAAA 116572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTGTT GAAGCATTCA TTTTTCAAAT ATGCTAAGCC CCCAGAGCTT TCTGTAAAAA 187 AACTCTTTGC TGACCTGCCA CCACTTTGGA ATCGAGTTAA AGCTCTACAG GTATTTCATG 116512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCTTTGC TGACCTGCCA CCACTTTGGA ATCGAGTTAA AGCTCTACAG .......... 237 GTATCGTTGT TCTAGGGTTG CTTAATTTTC CTACTTATCA TTGTTTATTG CTGATTGATG 116452 .......... .......... .......... .......... .......... .......... 237 AAATTATTGC AGCTTAAAGA TGCTGCCCAA CTAGCTTTGA AGAGAATGCC TTCTTCCGAG 116392 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CTTAAAGA TGCTGCCCAA CTAGCTTTGA AGAGAATGCC TTCTTCCGAG 285 CAGGAAGCAT TATCACAGGT TTGTGACAAT TGTTTCATCA ATGACAGTGT TCATTAGTTT 116332 |||||||||| |||||||| CAGGAAGCAT TATCACAG.. .......... .......... .......... .......... 303 TGAATGGTTA TGCTATCTAA GTTCCCGTGC ATTTATTTGT TCCATTAGCT GTAATGCTAT 116272 .......... .......... .......... .......... .......... .......... 303 TCTTCTGTGC GCAAAAATGC CATTCAACTC TTAAATTAGG TTTCCATCGT TAATGAGAAA 116212 .......... .......... .......... .......... .......... .......... 303 ATGTAATCAG CCTCTCAATA TGAATTCCAG ATCTTTGGAT CTCCATTTTT CTCTTTTGAA 116152 .......... .......... .......... .......... .......... .......... 303 CTTTGTGCAT CCCATGAAAA TCAGAGATAT CGAATTGGTA GGTGTATAAT TGCTATTTAT 116092 .......... .......... .......... .......... .......... .......... 303 AACTGTCTAA TCCATTCTGT TGGTTCTTTA TATACTTTTA AAGAATGTTG TACTTTCTAT 116032 .......... .......... .......... .......... .......... .......... 303 TCCTGTCTTC TTTGGACATG GGGATAGGAT GTTGATGACG TTATCTCTGG TTTCAAAAGA 115972 .......... .......... .......... .......... .......... .......... 303 AAAAGCAAAA AAGATGGGTG ACGATGTACT CAGAATGTTT TGATGTTTTT AGCCCAAAGG 115912 .......... .......... .......... .......... .......... .......... 303 ATTGCTTCTG ATATTGTGTC TATGGCCCTG TTTATATCTA AAAGCAAGTA AATGCATTTT 115852 .......... .......... .......... .......... .......... .......... 303 CCATCATCTT TTTCCCTTTT TGCAAGTGTT AATGTTGCTT ACGCCAGTCC TTCTCTTTTC 115792 .......... .......... .......... .......... .......... .......... 303 ACGTTTCTTT ATCTGTGGCA TGTGAGTGTG AACAAGGTGT GAGTTTCCTT CTTCAAAATC 115732 .......... .......... .......... .......... .......... .......... 303 TCCCATCTGT TTTAATATGT TGTTGTTCTT CACAGAGTGA GTACCAACGG GGAGTTAGCG 115672 ||||| |||||||||| |||||||||| .......... .......... .......... .....AGTGA GTACCAACGG GGAGTTAGCG 328 CCTGGAACTT TGATTTGGAG GATTTAAAGC TTCAGGCTTC ACTGGTATAT ATATGAGAGG 115612 |||||||||| ||||| |||| |||||||||| |||||||||| |||| CCTGGAACTT TGATTCGGAG GATTTAAAGC TTCAGGCTTC ACTG...... .......... 372 CGTCTCTTTA TATCTGATAA AGACGCTCTT TCACTTTTGC TCCATGAATT TTGCCATCCT 115552 .......... .......... .......... .......... .......... .......... 372 AAATTTAATA GTCTCTCGAT TTCTGGGGCA GGTACAGGAC GATGATGAAA TACAAGAAAT 115492 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTACAGGAC GATGATGAAA TACAAGAAAT 401 TAAGGAAGAA GATGATACCA TCAAAGCTTA TATGAACTAC AAGGTCTTTG CCAGTCTTTT 115432 |||||||||| |||||||||| |||||||||| |||||||||| ||| TAAGGAAGAA GATGATACCA TCAAAGCTTA TATGAACTAC AAG....... .......... 444 CTGTGGTGCT TTAGTCAATT TTCAAGTTAC TCAGATCAGC CTTGAACTGT TCTCCTATTT 115372 .......... .......... .......... .......... .......... .......... 444 GCAGGAGAAA TCTGTTGCCC TACAATATGC TGGAAAATCA ACCCCTAGAA AAGATTCTAT 115312 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GAGAAA TCTGTTGCCC TACAATATGC TGGAAAATCA ACCCCTAGAA AAGATTCTAT 500 TGCCAGGTAT ATTCTTTTTC ATTTTGACCA GCCACATAGA GTTTGTCGTA GAAAGATATC 115252 |||||| TGCCAG.... .......... .......... .......... .......... .......... 506 AAAATGTAGC TGTTAGTAAC TTAGTTTGCT AGAGGGAATG ACGCCTTGTT TGAATTTTGA 115192 .......... .......... .......... .......... .......... .......... 506 ACTTTTTTTA ACTTGAGTTC CTTGAACTTT TAGGTGTTAG AACTAGTTAA ACCATTTTGG 115132 .......... .......... .......... .......... .......... .......... 506 GCCAACTATT ATACTCCCAC CATTTATTTT TCAAAAGTCA TACTTTTTTG GTGCGGAGTT 115072 .......... .......... .......... .......... .......... .......... 506 TAAGATGTTA ACTTGACATA TATATTATAT TGATGGAATA AATATCAAAT TAGTGATTGT 115012 .......... .......... .......... .......... .......... .......... 506 AAAATTAGCA TGATACTGAA ATATCATGTT GAAGTTCAAA ATTTGGATAC TTGAACAAAT 114952 .......... .......... .......... .......... .......... .......... 506 CTTTATCATA GGAAGTTGTG AAAGACTTAT TGTATTATGG GATGGTGTCA AACATTTTGA 114892 .......... .......... .......... .......... .......... .......... 506 ATATCCCGCA ATACTAAGCA TGTCATACAA ATAGAGGTGC AGGCTGTATG TGCTTTCATG 114832 .......... .......... .......... .......... .......... .......... 506 CTAAATATTG TTCTTAGAGT CCATATTGAT GTACTTAAGT TAGTTTGTTC GTATTTACGT 114772 .......... .......... .......... .......... .......... .......... 506 TAAGGGTAGA AGGGTAGAGG GGTGATCCAT TATCCACTAT GCATCAGTAA CCTCAGGTGT 114712 .......... .......... .......... .......... .......... .......... 506 TTTTCGGTTC CAAAAAGTAG TTGTCTTATA CATAATATCC TCTCTTCTGG AGCGTATTTT 114652 .......... .......... .......... .......... .......... .......... 506 TTTTCCTGTG GAATCAAGTG CAAACCAAAT ATTCTCAATA TAATATCTTA TCTTCTTCAG 114592 .......... .......... .......... .......... .......... .......... 506 AAGATATAAA ACATCAGCAT ATTTTGTGAG AACAGCTCTC TCCTGGGGAG AACATTAATA 114532 .......... .......... .......... .......... .......... .......... 506 ATAGTTTTGT CATCACCACG AAAATATGAT AGTTTAGGTA ATGCTTATGC ATTGGCTTAG 114472 .......... .......... .......... .......... .......... .......... 506 ATTATGTGAG CTTTTAGTTA AAATTTTATT TTTGGTCAAG CTATGCCTTG GATTATTATC 114412 .......... .......... .......... .......... .......... .......... 506 ATCTCAATTT TAGTTTTCGT TGAACATCTT GTGCCCAGTG AGCAAGAAAG TATTGGTGAA 114352 || |||||||||| |||||||||| .......... .......... .......... ........TG AGCAAGAAAG TATTGGTGAA 528 GTGCCAGTAG CTGAATACGA GATCAAGAAG GGAAAAGATT TGGAGAGCAG TACACCAGAT 114292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAGTAG CTGAATACGA GATCAAGAAG GGAAAAGATT TGGAGAGCAG TACACCAGAT 588 TCTGATCA 114284 |||||||| TCTGATCA 596 hqPGS_C08SLm0006K11.1-_SGN-E330413+ (116991 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114284) ******************************************************************************** EST sequence 103 +strand 750 n (File: SGN-E317202+) 1 ACTTTTCTCA TCCCAGGCTG GGAATATATT ACTGGACACT AATGGGGCAG TAAAGCTGGG 61 CGATTTTGGT GTTTCCGCAT GCATGTTTGA CAGTGGTGAT AGACAGCGGT CTAGGAATAC 121 CTTTGTAGGA ACTCCGTGCT GGATGGCACC AGAAGTTCTG CAGCCTGGAA CTGGATATGA 181 TTTTAAGGCT GACATTTGGT CATTTGGAAT AACTGCCCTG GAATTGGCTC ATGGTCATGC 241 ACCATTTTCA AAGTACCCTC CAATGAAGGT ACTTCTGATG ACAATACAGA ATGCCCCTCC 301 TGGACTTGAT TATGACAGAG ACAAAAAATT CTCTAAGTCA TTCAAGGAAA TGGTTGCGAT 361 GTGTTTGGTG AAAGATCAAA CTAAAAGGCC AACTGCTGAG AAGTTGTTGA AGCATTCATT 421 TTTCAAATAT GCTAAGCCCC CAGAGCTTTC TGTAAAAAAA CTCTTTGCTG ACCTGCCACC 481 ACTTTGGAAT CGAGTTAAAG CTCTACAGCT TAAAGATGCT GCCCAACTAG CTTTGAAGAG 541 AATGCCTTCT TCCGAGCAGG AAGCATTATC ACAGAGTGAG TACCAACGGG GAGTTAGCGC 601 CTGGAACTTT GATTTGGAGG ATTTAAAGCT TCAGGCTTCA CTGGTACAGG ACGATGATGA 661 AATACAAGAA ATTAAGGAAG AAGATGATAC CATCAAAGCT TATATGAACT ACANGGGAGA 721 ATCTGTTGCC CCTACATATG CTGGAAAATC Predicted gene structure (within gDNA segment 118769 to 114471): Exon 1 118169 118029 ( 141 n); cDNA 1 141 ( 141 n); score: 1.000 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 117920 117876 ( 45 n); cDNA 142 186 ( 45 n); score: 1.000 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 117170 117089 ( 82 n); cDNA 187 268 ( 82 n); score: 1.000 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 116994 116926 ( 69 n); cDNA 269 337 ( 69 n); score: 1.000 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 5 116692 116522 ( 171 n); cDNA 338 508 ( 171 n); score: 1.000 Intron 5 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 116439 116374 ( 66 n); cDNA 509 574 ( 66 n); score: 1.000 Intron 6 116373 115697 ( 677 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 7 115696 115628 ( 69 n); cDNA 575 643 ( 69 n); score: 1.000 Intron 7 115627 115521 ( 107 n); Pd: 0.620 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 8 115520 115449 ( 72 n); cDNA 644 715 ( 72 n); score: 0.986 Intron 8 115448 115368 ( 81 n); Pd: 0.788 (s: 0.98), Pa: 0.968 (s: 0) Exon 9 115367 115333 ( 35 n); cDNA 716 750 ( 35 n); score: 0.800 MATCH C08SLm0006K11.1- SGN-E317202+ 0.999 750 1.000 C PGS_C08SLm0006K11.1-_SGN-E317202+ (118169 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115333) Alignment (genomic DNA sequence = upper lines): ACTTTTCTCA TCCCAGGCTG GGAATATATT ACTGGACACT AATGGGGCAG TAAAGCTGGG 118110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTCTCA TCCCAGGCTG GGAATATATT ACTGGACACT AATGGGGCAG TAAAGCTGGG 60 CGATTTTGGT GTTTCCGCAT GCATGTTTGA CAGTGGTGAT AGACAGCGGT CTAGGAATAC 118050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATTTTGGT GTTTCCGCAT GCATGTTTGA CAGTGGTGAT AGACAGCGGT CTAGGAATAC 120 CTTTGTAGGA ACTCCGTGCT GGTGAGCATA TAGGCATCCT TTCAGTCACT TCCTATCTAT 117990 |||||||||| |||||||||| | CTTTGTAGGA ACTCCGTGCT G......... .......... .......... .......... 141 AATTGTTTCT ATGCAAGTTT TTTCGTGCTC TACATGTCTA TCAAGGCATG AACTACTTTT 117930 .......... .......... .......... .......... .......... .......... 141 ATTTTGTAGG ATGGCACCAG AAGTTCTGCA GCCTGGAACT GGATATGATT TTAAGTGAGT 117870 | |||||||||| |||||||||| |||||||||| |||||||||| |||| .........G ATGGCACCAG AAGTTCTGCA GCCTGGAACT GGATATGATT TTAA...... 186 TTTCTCTGTC ACGGTGTAAG ATCTTGATGG TTTCATATGT TATGATGTAC ATTTTTCATT 117810 .......... .......... .......... .......... .......... .......... 186 TAATGGTTGA CTGAGAGCTA TTTGAGAAAG CTGAAGGCTG AATTCTTTTT GAAATTGTAC 117750 .......... .......... .......... .......... .......... .......... 186 CATTGAATTA CTTTACTGAA CTTTTAGTGC TGAAAGGTAT TAAGTTTATG CATTTTAATC 117690 .......... .......... .......... .......... .......... .......... 186 CTGTCACTGA ATTCAAATAT GAATTATCCT CTTTAGTATT TTTTTGAAAT TAAAACTGAG 117630 .......... .......... .......... .......... .......... .......... 186 TGTATTAATT TATCACTAGA TAATGCTAGC TTCTTGGACT TAATCAGGTT GTAATGATGA 117570 .......... .......... .......... .......... .......... .......... 186 AGCTTATATC ATTCATGATA TAACATATTC CAAGCATTTT GTTCATGTAA TAAGCAACTA 117510 .......... .......... .......... .......... .......... .......... 186 CGGTTGATTA GAAACTTGTT CTCGGATATG TGGTCTTTCA AACTTTAGTG ATAACTAAAT 117450 .......... .......... .......... .......... .......... .......... 186 TTTGGTTTAC TTGAAATTGG TAAAGCAATT TAAGTGGCGC ATGGAGTATT ACATGATTTT 117390 .......... .......... .......... .......... .......... .......... 186 GAGTTTTTGT ATAAATAAGT CTTATTTTTT AATGACTTAA TCTGGTAATT TTAAGTGCTT 117330 .......... .......... .......... .......... .......... .......... 186 AAAACAGTTA TCAAACACAC TTTTAGATGA GATTCTGAAT ATTGACATAA AGGTCTACAT 117270 .......... .......... .......... .......... .......... .......... 186 TTTCTTCTTG TCTAAGTATA ATGCTTGTGT ACTTATGCAG GGTCTATGAG AGTATTTAGA 117210 .......... .......... .......... .......... .......... .......... 186 TTATCAATGC TATTGACTCT AATTTTCTTC CTTCTACAGG GCTGACATTT GGTCATTTGG 117150 | |||||||||| |||||||||| .......... .......... .......... .........G GCTGACATTT GGTCATTTGG 207 AATAACTGCC CTGGAATTGG CTCATGGTCA TGCACCATTT TCAAAGTACC CTCCAATGAA 117090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAACTGCC CTGGAATTGG CTCATGGTCA TGCACCATTT TCAAAGTACC CTCCAATGAA 267 GGTATCTATT CATTTCCAAG AGGGTACAAC AACAATACTT TAACTTGGTG CTTGAGTATG 117030 | G......... .......... .......... .......... .......... .......... 268 CATTATTTAA GTTACCCTCT GTTCTCTCGC CACAGGTACT TCTGATGACA ATACAGAATG 116970 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTACT TCTGATGACA ATACAGAATG 293 CCCCTCCTGG ACTTGATTAT GACAGAGACA AAAAATTCTC TAAGGTAGTA ATTCCATTTT 116910 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCCTCCTGG ACTTGATTAT GACAGAGACA AAAAATTCTC TAAG...... .......... 337 TGGAATTATT TCATAAGTAG GTATTAAATA CTGGTTTAAT TCGACTGTAC ACACCCCCCC 116850 .......... .......... .......... .......... .......... .......... 337 CCCCCCCCCA AAAAAAAAAA AAAAGAAAGA AAGAAAAGTT AGTCGTATCA TTTGCATTTG 116790 .......... .......... .......... .......... .......... .......... 337 TACATGGAGA TATTTGTATA TGTTGATCTG CTACGTGCTT CAATCTTTAT TTTGTATCAT 116730 .......... .......... .......... .......... .......... .......... 337 GTACGAAGAA CAAAATGGTT TTTACTTGTC GTAACAGTCA TTCAAGGAAA TGGTTGCGAT 116670 ||| |||||||||| |||||||||| .......... .......... .......... .......TCA TTCAAGGAAA TGGTTGCGAT 360 GTGTTTGGTG AAAGATCAAA CTAAAAGGCC AACTGCTGAG AAGTTGTTGA AGCATTCATT 116610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTGGTG AAAGATCAAA CTAAAAGGCC AACTGCTGAG AAGTTGTTGA AGCATTCATT 420 TTTCAAATAT GCTAAGCCCC CAGAGCTTTC TGTAAAAAAA CTCTTTGCTG ACCTGCCACC 116550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAAATAT GCTAAGCCCC CAGAGCTTTC TGTAAAAAAA CTCTTTGCTG ACCTGCCACC 480 ACTTTGGAAT CGAGTTAAAG CTCTACAGGT ATTTCATGGT ATCGTTGTTC TAGGGTTGCT 116490 |||||||||| |||||||||| |||||||| ACTTTGGAAT CGAGTTAAAG CTCTACAG.. .......... .......... .......... 508 TAATTTTCCT ACTTATCATT GTTTATTGCT GATTGATGAA ATTATTGCAG CTTAAAGATG 116430 |||||||||| .......... .......... .......... .......... .......... CTTAAAGATG 518 CTGCCCAACT AGCTTTGAAG AGAATGCCTT CTTCCGAGCA GGAAGCATTA TCACAGGTTT 116370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTGCCCAACT AGCTTTGAAG AGAATGCCTT CTTCCGAGCA GGAAGCATTA TCACAG.... 574 GTGACAATTG TTTCATCAAT GACAGTGTTC ATTAGTTTTG AATGGTTATG CTATCTAAGT 116310 .......... .......... .......... .......... .......... .......... 574 TCCCGTGCAT TTATTTGTTC CATTAGCTGT AATGCTATTC TTCTGTGCGC AAAAATGCCA 116250 .......... .......... .......... .......... .......... .......... 574 TTCAACTCTT AAATTAGGTT TCCATCGTTA ATGAGAAAAT GTAATCAGCC TCTCAATATG 116190 .......... .......... .......... .......... .......... .......... 574 AATTCCAGAT CTTTGGATCT CCATTTTTCT CTTTTGAACT TTGTGCATCC CATGAAAATC 116130 .......... .......... .......... .......... .......... .......... 574 AGAGATATCG AATTGGTAGG TGTATAATTG CTATTTATAA CTGTCTAATC CATTCTGTTG 116070 .......... .......... .......... .......... .......... .......... 574 GTTCTTTATA TACTTTTAAA GAATGTTGTA CTTTCTATTC CTGTCTTCTT TGGACATGGG 116010 .......... .......... .......... .......... .......... .......... 574 GATAGGATGT TGATGACGTT ATCTCTGGTT TCAAAAGAAA AAGCAAAAAA GATGGGTGAC 115950 .......... .......... .......... .......... .......... .......... 574 GATGTACTCA GAATGTTTTG ATGTTTTTAG CCCAAAGGAT TGCTTCTGAT ATTGTGTCTA 115890 .......... .......... .......... .......... .......... .......... 574 TGGCCCTGTT TATATCTAAA AGCAAGTAAA TGCATTTTCC ATCATCTTTT TCCCTTTTTG 115830 .......... .......... .......... .......... .......... .......... 574 CAAGTGTTAA TGTTGCTTAC GCCAGTCCTT CTCTTTTCAC GTTTCTTTAT CTGTGGCATG 115770 .......... .......... .......... .......... .......... .......... 574 TGAGTGTGAA CAAGGTGTGA GTTTCCTTCT TCAAAATCTC CCATCTGTTT TAATATGTTG 115710 .......... .......... .......... .......... .......... .......... 574 TTGTTCTTCA CAGAGTGAGT ACCAACGGGG AGTTAGCGCC TGGAACTTTG ATTTGGAGGA 115650 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...AGTGAGT ACCAACGGGG AGTTAGCGCC TGGAACTTTG ATTTGGAGGA 621 TTTAAAGCTT CAGGCTTCAC TGGTATATAT ATGAGAGGCG TCTCTTTATA TCTGATAAAG 115590 |||||||||| |||||||||| || TTTAAAGCTT CAGGCTTCAC TG........ .......... .......... .......... 643 ACGCTCTTTC ACTTTTGCTC CATGAATTTT GCCATCCTAA ATTTAATAGT CTCTCGATTT 115530 .......... .......... .......... .......... .......... .......... 643 CTGGGGCAGG TACAGGACGA TGATGAAATA CAAGAAATTA AGGAAGAAGA TGATACCATC 115470 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TACAGGACGA TGATGAAATA CAAGAAATTA AGGAAGAAGA TGATACCATC 694 AAAGCTTATA TGAACTACAA GGTCTTTGCC AGTCTTTTCT GTGGTGCTTT AGTCAATTTT 115410 |||||||||| ||||||||| | AAAGCTTATA TGAACTACAN G......... .......... .......... .......... 715 CAAGTTACTC AGATCAGCCT TGAACTGTTC TCCTATTTGC AGGAGAAATC TGTTGCCCTA 115350 | |||| |||||||| .......... .......... .......... .......... ..GGAGAATC TGTTGCCCCT 733 CAATATGCTG GAAAATC 115333 |||||||| ||||||| ACATATGCTG GAAAATC 750 hqPGS_C08SLm0006K11.1-_SGN-E317202+ (118169 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115333) ******************************************************************************** EST sequence 137 +strand 497 n (File: SGN-E245973+) 1 AAGTACCCTC CAATGAAAGT ACTTCTGATG ACAATACAGA ATGCCCCTCC TGGACTTGAT 61 TATGACAGAG ACAAAAAATT CTCTAAGTCA TTCAAGGAAA TGGTTGCGAT GTGTTTGGTG 121 AAAGATCAAA CTAAAAGGCC AACTGCTGAG AAGTTGTTGA AGCATTCATT TTTCAAATAT 181 GCTAAGCCCC CAGAGCTTTC TGTAAAAAAA CTCTTTGCTG ACCTGCCACC ACTTTGGAAT 241 CGAGTTAAAG CTCTACAGCT TAAAGATGCT GCCCAACTAG CTTTGAAGAG AATGCCTTCT 301 TCCGAGCAGG AAGCATTATC ACAGAGTGAG TACCAACGGG GAGTTAGCGC CTGGAACTTT 361 GATTTGGAGG ATTTAAAGCT TCAAGCTTCA CTGGTACAGG ACGATGATGA AATACAAGAA 421 ATTAAGGAAG AAGATGATAC CATCAAAGCT TATATGAACT ACAAGGAGAA ATCTGTTGCC 481 CTACAATATG CTGGAAA Predicted gene structure (within gDNA segment 117774 to 114726): Exon 1 117106 117089 ( 18 n); cDNA 1 18 ( 18 n); score: 0.944 Intron 1 117088 116995 ( 94 n); Pd: 0.981 (s: 0), Pa: 0.890 (s: 1.00) Exon 2 116994 116926 ( 69 n); cDNA 19 87 ( 69 n); score: 1.000 Intron 2 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 116692 116522 ( 171 n); cDNA 88 258 ( 171 n); score: 1.000 Intron 3 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 116439 116374 ( 66 n); cDNA 259 324 ( 66 n); score: 1.000 Intron 4 116373 115697 ( 677 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 115696 115628 ( 69 n); cDNA 325 393 ( 69 n); score: 0.986 Intron 5 115627 115521 ( 107 n); Pd: 0.620 (s: 0.98), Pa: 0.975 (s: 1.00) Exon 6 115520 115449 ( 72 n); cDNA 394 465 ( 72 n); score: 1.000 Intron 6 115448 115368 ( 81 n); Pd: 0.788 (s: 1.00), Pa: 0.968 (s: 0) Exon 7 115367 115336 ( 32 n); cDNA 466 497 ( 32 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E245973+ 0.998 497 1.000 C PGS_C08SLm0006K11.1-_SGN-E245973+ (117106 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115336) Alignment (genomic DNA sequence = upper lines): AAGTACCCTC CAATGAAGGT ATCTATTCAT TTCCAAGAGG GTACAACAAC AATACTTTAA 117047 |||||||||| ||||||| AAGTACCCTC CAATGAAA.. .......... .......... .......... .......... 18 CTTGGTGCTT GAGTATGCAT TATTTAAGTT ACCCTCTGTT CTCTCGCCAC AGGTACTTCT 116987 |||||||| .......... .......... .......... .......... .......... ..GTACTTCT 26 GATGACAATA CAGAATGCCC CTCCTGGACT TGATTATGAC AGAGACAAAA AATTCTCTAA 116927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGACAATA CAGAATGCCC CTCCTGGACT TGATTATGAC AGAGACAAAA AATTCTCTAA 86 GGTAGTAATT CCATTTTTGG AATTATTTCA TAAGTAGGTA TTAAATACTG GTTTAATTCG 116867 | G......... .......... .......... .......... .......... .......... 87 ACTGTACACA CCCCCCCCCC CCCCCCAAAA AAAAAAAAAA AGAAAGAAAG AAAAGTTAGT 116807 .......... .......... .......... .......... .......... .......... 87 CGTATCATTT GCATTTGTAC ATGGAGATAT TTGTATATGT TGATCTGCTA CGTGCTTCAA 116747 .......... .......... .......... .......... .......... .......... 87 TCTTTATTTT GTATCATGTA CGAAGAACAA AATGGTTTTT ACTTGTCGTA ACAGTCATTC 116687 |||||| .......... .......... .......... .......... .......... ....TCATTC 93 AAGGAAATGG TTGCGATGTG TTTGGTGAAA GATCAAACTA AAAGGCCAAC TGCTGAGAAG 116627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAATGG TTGCGATGTG TTTGGTGAAA GATCAAACTA AAAGGCCAAC TGCTGAGAAG 153 TTGTTGAAGC ATTCATTTTT CAAATATGCT AAGCCCCCAG AGCTTTCTGT AAAAAAACTC 116567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAAGC ATTCATTTTT CAAATATGCT AAGCCCCCAG AGCTTTCTGT AAAAAAACTC 213 TTTGCTGACC TGCCACCACT TTGGAATCGA GTTAAAGCTC TACAGGTATT TCATGGTATC 116507 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTGCTGACC TGCCACCACT TTGGAATCGA GTTAAAGCTC TACAG..... .......... 258 GTTGTTCTAG GGTTGCTTAA TTTTCCTACT TATCATTGTT TATTGCTGAT TGATGAAATT 116447 .......... .......... .......... .......... .......... .......... 258 ATTGCAGCTT AAAGATGCTG CCCAACTAGC TTTGAAGAGA ATGCCTTCTT CCGAGCAGGA 116387 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CTT AAAGATGCTG CCCAACTAGC TTTGAAGAGA ATGCCTTCTT CCGAGCAGGA 311 AGCATTATCA CAGGTTTGTG ACAATTGTTT CATCAATGAC AGTGTTCATT AGTTTTGAAT 116327 |||||||||| ||| AGCATTATCA CAG....... .......... .......... .......... .......... 324 GGTTATGCTA TCTAAGTTCC CGTGCATTTA TTTGTTCCAT TAGCTGTAAT GCTATTCTTC 116267 .......... .......... .......... .......... .......... .......... 324 TGTGCGCAAA AATGCCATTC AACTCTTAAA TTAGGTTTCC ATCGTTAATG AGAAAATGTA 116207 .......... .......... .......... .......... .......... .......... 324 ATCAGCCTCT CAATATGAAT TCCAGATCTT TGGATCTCCA TTTTTCTCTT TTGAACTTTG 116147 .......... .......... .......... .......... .......... .......... 324 TGCATCCCAT GAAAATCAGA GATATCGAAT TGGTAGGTGT ATAATTGCTA TTTATAACTG 116087 .......... .......... .......... .......... .......... .......... 324 TCTAATCCAT TCTGTTGGTT CTTTATATAC TTTTAAAGAA TGTTGTACTT TCTATTCCTG 116027 .......... .......... .......... .......... .......... .......... 324 TCTTCTTTGG ACATGGGGAT AGGATGTTGA TGACGTTATC TCTGGTTTCA AAAGAAAAAG 115967 .......... .......... .......... .......... .......... .......... 324 CAAAAAAGAT GGGTGACGAT GTACTCAGAA TGTTTTGATG TTTTTAGCCC AAAGGATTGC 115907 .......... .......... .......... .......... .......... .......... 324 TTCTGATATT GTGTCTATGG CCCTGTTTAT ATCTAAAAGC AAGTAAATGC ATTTTCCATC 115847 .......... .......... .......... .......... .......... .......... 324 ATCTTTTTCC CTTTTTGCAA GTGTTAATGT TGCTTACGCC AGTCCTTCTC TTTTCACGTT 115787 .......... .......... .......... .......... .......... .......... 324 TCTTTATCTG TGGCATGTGA GTGTGAACAA GGTGTGAGTT TCCTTCTTCA AAATCTCCCA 115727 .......... .......... .......... .......... .......... .......... 324 TCTGTTTTAA TATGTTGTTG TTCTTCACAG AGTGAGTACC AACGGGGAGT TAGCGCCTGG 115667 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTGAGTACC AACGGGGAGT TAGCGCCTGG 354 AACTTTGATT TGGAGGATTT AAAGCTTCAG GCTTCACTGG TATATATATG AGAGGCGTCT 115607 |||||||||| |||||||||| ||||||||| ||||||||| AACTTTGATT TGGAGGATTT AAAGCTTCAA GCTTCACTG. .......... .......... 393 CTTTATATCT GATAAAGACG CTCTTTCACT TTTGCTCCAT GAATTTTGCC ATCCTAAATT 115547 .......... .......... .......... .......... .......... .......... 393 TAATAGTCTC TCGATTTCTG GGGCAGGTAC AGGACGATGA TGAAATACAA GAAATTAAGG 115487 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTAC AGGACGATGA TGAAATACAA GAAATTAAGG 427 AAGAAGATGA TACCATCAAA GCTTATATGA ACTACAAGGT CTTTGCCAGT CTTTTCTGTG 115427 |||||||||| |||||||||| |||||||||| |||||||| AAGAAGATGA TACCATCAAA GCTTATATGA ACTACAAG.. .......... .......... 465 GTGCTTTAGT CAATTTTCAA GTTACTCAGA TCAGCCTTGA ACTGTTCTCC TATTTGCAGG 115367 | .......... .......... .......... .......... .......... .........G 466 AGAAATCTGT TGCCCTACAA TATGCTGGAA A 115336 |||||||||| |||||||||| |||||||||| | AGAAATCTGT TGCCCTACAA TATGCTGGAA A 497 hqPGS_C08SLm0006K11.1-_SGN-E245973+ (117106 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115336) ******************************************************************************** EST sequence 126 +strand 657 n (File: SGN-E394843+) 1 TTAAGGCTGG GAATATATTG CTGGACACTA ATGGGGTAGT AAAGCTCGCT GACTTTGGTG 61 TCTCTGCATG CATGTTTGAC AGTGGTGACA GGCAGCGCTC TAGGAATACA TTTACAGGAA 121 CTCCGTGCTG GATGGCACCA GAAGTTTTGC AGCCTGGAAC TGGATATGAT TTCAAGGCTG 181 ACATTTGGTC GTTTGGAATA ACTGCCTTAG AGCTGGCTCA TGGTCATGCA CCATTTTCGA 241 AGTACCCTCC AATGAAGGTT CTGCTGATGA CCATAAACAG TGCTCCTCCT GGACTTGACT 301 ATGACCGTGA TAAGAAATTC TCGAAGTCTT TCAAGGAAAT GGTTGCCATG TGCTTGGTGA 361 AAGATCAAAC TAAAAGGCCA ACTGCTGAAA AATTGTTGAA GCACATTTTT TTCAAAAAAG 421 TTAAGCCTCC AGAGCTGTCT GTAAAGAAAC TGTTTGCCGA CTTACCATCG CTAGGGAGTC 481 GAGTAAAAAT GCTCCAGCTT AAAGATGCTG CACAACTAGC CTCGAAGAAA ATGCCTTCAT 541 CCGAGCAAGA AGCAATATCA CAGAGTGAAT ACCAACGAGG TGTTAGTGCC TGGAACTTTG 601 ATCTGGAGGA TTTGAAGTTT CAAGCTTCAA TGGTGCAAGA TGATGACGAA ATACCTG Predicted gene structure (within gDNA segment 118785 to 113331): Exon 1 118153 118029 ( 125 n); cDNA 6 130 ( 125 n); score: 0.888 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 0.88), Pa: 0.998 (s: 0.96) Exon 2 117920 117876 ( 45 n); cDNA 131 175 ( 45 n); score: 0.956 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 117170 117089 ( 82 n); cDNA 176 257 ( 82 n); score: 0.927 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 0.92), Pa: 0.890 (s: 0.82) Exon 4 116994 116926 ( 69 n); cDNA 258 326 ( 69 n); score: 0.812 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 0.82), Pa: 0.974 (s: 0.94) Exon 5 116692 116522 ( 171 n); cDNA 327 497 ( 171 n); score: 0.830 Intron 5 116521 116440 ( 82 n); Pd: 0.984 (s: 0.72), Pa: 0.999 (s: 0.90) Exon 6 116439 116374 ( 66 n); cDNA 498 563 ( 66 n); score: 0.894 Intron 6 116373 115697 ( 677 n); Pd: 0.995 (s: 0.88), Pa: 0.995 (s: 0.90) Exon 7 115696 115628 ( 69 n); cDNA 564 632 ( 69 n); score: 0.870 Intron 7 115627 115521 ( 107 n); Pd: 0.620 (s: 0.88), Pa: 0.975 (s: 0) Exon 8 115520 115499 ( 22 n); cDNA 633 654 ( 22 n); score: 0.818 MATCH C08SLm0006K11.1- SGN-E394843+ 0.866 649 0.988 C PGS_C08SLm0006K11.1-_SGN-E394843+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) Alignment (genomic DNA sequence = upper lines): GCTGGGAATA TATTACTGGA CACTAATGGG GCAGTAAAGC TGGGCGATTT TGGTGTTTCC 118094 |||||||||| |||| ||||| |||||||||| | |||||||| | | || || |||||| || GCTGGGAATA TATTGCTGGA CACTAATGGG GTAGTAAAGC TCGCTGACTT TGGTGTCTCT 65 GCATGCATGT TTGACAGTGG TGATAGACAG CGGTCTAGGA ATACCTTTGT AGGAACTCCG 118034 |||||||||| |||||||||| ||| || ||| || ||||||| |||| ||| |||||||||| GCATGCATGT TTGACAGTGG TGACAGGCAG CGCTCTAGGA ATACATTTAC AGGAACTCCG 125 TGCTGGTGAG CATATAGGCA TCCTTTCAGT CACTTCCTAT CTATAATTGT TTCTATGCAA 117974 ||||| TGCTG..... .......... .......... .......... .......... .......... 130 GTTTTTTCGT GCTCTACATG TCTATCAAGG CATGAACTAC TTTTATTTTG TAGGATGGCA 117914 ||||||| .......... .......... .......... .......... .......... ...GATGGCA 137 CCAGAAGTTC TGCAGCCTGG AACTGGATAT GATTTTAAGT GAGTTTTCTC TGTCACGGTG 117854 ||||||||| |||||||||| |||||||||| ||||| || CCAGAAGTTT TGCAGCCTGG AACTGGATAT GATTTCAA.. .......... .......... 175 TAAGATCTTG ATGGTTTCAT ATGTTATGAT GTACATTTTT CATTTAATGG TTGACTGAGA 117794 .......... .......... .......... .......... .......... .......... 175 GCTATTTGAG AAAGCTGAAG GCTGAATTCT TTTTGAAATT GTACCATTGA ATTACTTTAC 117734 .......... .......... .......... .......... .......... .......... 175 TGAACTTTTA GTGCTGAAAG GTATTAAGTT TATGCATTTT AATCCTGTCA CTGAATTCAA 117674 .......... .......... .......... .......... .......... .......... 175 ATATGAATTA TCCTCTTTAG TATTTTTTTG AAATTAAAAC TGAGTGTATT AATTTATCAC 117614 .......... .......... .......... .......... .......... .......... 175 TAGATAATGC TAGCTTCTTG GACTTAATCA GGTTGTAATG ATGAAGCTTA TATCATTCAT 117554 .......... .......... .......... .......... .......... .......... 175 GATATAACAT ATTCCAAGCA TTTTGTTCAT GTAATAAGCA ACTACGGTTG ATTAGAAACT 117494 .......... .......... .......... .......... .......... .......... 175 TGTTCTCGGA TATGTGGTCT TTCAAACTTT AGTGATAACT AAATTTTGGT TTACTTGAAA 117434 .......... .......... .......... .......... .......... .......... 175 TTGGTAAAGC AATTTAAGTG GCGCATGGAG TATTACATGA TTTTGAGTTT TTGTATAAAT 117374 .......... .......... .......... .......... .......... .......... 175 AAGTCTTATT TTTTAATGAC TTAATCTGGT AATTTTAAGT GCTTAAAACA GTTATCAAAC 117314 .......... .......... .......... .......... .......... .......... 175 ACACTTTTAG ATGAGATTCT GAATATTGAC ATAAAGGTCT ACATTTTCTT CTTGTCTAAG 117254 .......... .......... .......... .......... .......... .......... 175 TATAATGCTT GTGTACTTAT GCAGGGTCTA TGAGAGTATT TAGATTATCA ATGCTATTGA 117194 .......... .......... .......... .......... .......... .......... 175 CTCTAATTTT CTTCCTTCTA CAGGGCTGAC ATTTGGTCAT TTGGAATAAC TGCCCTGGAA 117134 ||||||| |||||||| | |||||||||| |||| | || .......... .......... ...GGCTGAC ATTTGGTCGT TTGGAATAAC TGCCTTAGAG 212 TTGGCTCATG GTCATGCACC ATTTTCAAAG TACCCTCCAA TGAAGGTATC TATTCATTTC 117074 ||||||||| |||||||||| |||||| ||| |||||||||| ||||| CTGGCTCATG GTCATGCACC ATTTTCGAAG TACCCTCCAA TGAAG..... .......... 257 CAAGAGGGTA CAACAACAAT ACTTTAACTT GGTGCTTGAG TATGCATTAT TTAAGTTACC 117014 .......... .......... .......... .......... .......... .......... 257 CTCTGTTCTC TCGCCACAGG TACTTCTGAT GACAATACAG AATGCCCCTC CTGGACTTGA 116954 | | || ||||| ||| ||| | | ||| |||| |||||||||| .......... .........G TTCTGCTGAT GACCATAAAC AGTGCTCCTC CTGGACTTGA 298 TTATGACAGA GACAAAAAAT TCTCTAAGGT AGTAATTCCA TTTTTGGAAT TATTTCATAA 116894 |||||| | || || |||| |||| ||| CTATGACCGT GATAAGAAAT TCTCGAAG.. .......... .......... .......... 326 GTAGGTATTA AATACTGGTT TAATTCGACT GTACACACCC CCCCCCCCCC CCCAAAAAAA 116834 .......... .......... .......... .......... .......... .......... 326 AAAAAAAAGA AAGAAAGAAA AGTTAGTCGT ATCATTTGCA TTTGTACATG GAGATATTTG 116774 .......... .......... .......... .......... .......... .......... 326 TATATGTTGA TCTGCTACGT GCTTCAATCT TTATTTTGTA TCATGTACGA AGAACAAAAT 116714 .......... .......... .......... .......... .......... .......... 326 GGTTTTTACT TGTCGTAACA GTCATTCAAG GAAATGGTTG CGATGTGTTT GGTGAAAGAT 116654 || |||||| |||||||||| | ||||| || |||||||||| .......... .......... .TCTTTCAAG GAAATGGTTG CCATGTGCTT GGTGAAAGAT 365 CAAACTAAAA GGCCAACTGC TGAGAAGTTG TTGAAGCATT CATTTTTCAA ATATGCTAAG 116594 |||||||||| |||||||||| ||| || ||| |||||||| |||||||| | | | |||| CAAACTAAAA GGCCAACTGC TGAAAAATTG TTGAAGCACA TTTTTTTCAA AAAAGTTAAG 425 CCCCCAGAGC TTTCTGTAAA AAAACTCTTT GCTGACCTGC CACCACTTTG GAATCGAGTT 116534 || ||||||| | |||||||| ||||| ||| || ||| | | || | || | || |||||| CCTCCAGAGC TGTCTGTAAA GAAACTGTTT GCCGACTTAC CATCGCTAGG GAGTCGAGTA 485 AAAGCTCTAC AGGTATTTCA TGGTATCGTT GTTCTAGGGT TGCTTAATTT TCCTACTTAT 116474 ||| || | || AAAATGCTCC AG........ .......... .......... .......... .......... 497 CATTGTTTAT TGCTGATTGA TGAAATTATT GCAGCTTAAA GATGCTGCCC AACTAGCTTT 116414 |||||| |||||||| | ||||||| | .......... .......... .......... ....CTTAAA GATGCTGCAC AACTAGCCTC 523 GAAGAGAATG CCTTCTTCCG AGCAGGAAGC ATTATCACAG GTTTGTGACA ATTGTTTCAT 116354 ||||| |||| ||||| |||| |||| ||||| | |||||||| GAAGAAAATG CCTTCATCCG AGCAAGAAGC AATATCACAG .......... .......... 563 CAATGACAGT GTTCATTAGT TTTGAATGGT TATGCTATCT AAGTTCCCGT GCATTTATTT 116294 .......... .......... .......... .......... .......... .......... 563 GTTCCATTAG CTGTAATGCT ATTCTTCTGT GCGCAAAAAT GCCATTCAAC TCTTAAATTA 116234 .......... .......... .......... .......... .......... .......... 563 GGTTTCCATC GTTAATGAGA AAATGTAATC AGCCTCTCAA TATGAATTCC AGATCTTTGG 116174 .......... .......... .......... .......... .......... .......... 563 ATCTCCATTT TTCTCTTTTG AACTTTGTGC ATCCCATGAA AATCAGAGAT ATCGAATTGG 116114 .......... .......... .......... .......... .......... .......... 563 TAGGTGTATA ATTGCTATTT ATAACTGTCT AATCCATTCT GTTGGTTCTT TATATACTTT 116054 .......... .......... .......... .......... .......... .......... 563 TAAAGAATGT TGTACTTTCT ATTCCTGTCT TCTTTGGACA TGGGGATAGG ATGTTGATGA 115994 .......... .......... .......... .......... .......... .......... 563 CGTTATCTCT GGTTTCAAAA GAAAAAGCAA AAAAGATGGG TGACGATGTA CTCAGAATGT 115934 .......... .......... .......... .......... .......... .......... 563 TTTGATGTTT TTAGCCCAAA GGATTGCTTC TGATATTGTG TCTATGGCCC TGTTTATATC 115874 .......... .......... .......... .......... .......... .......... 563 TAAAAGCAAG TAAATGCATT TTCCATCATC TTTTTCCCTT TTTGCAAGTG TTAATGTTGC 115814 .......... .......... .......... .......... .......... .......... 563 TTACGCCAGT CCTTCTCTTT TCACGTTTCT TTATCTGTGG CATGTGAGTG TGAACAAGGT 115754 .......... .......... .......... .......... .......... .......... 563 GTGAGTTTCC TTCTTCAAAA TCTCCCATCT GTTTTAATAT GTTGTTGTTC TTCACAGAGT 115694 ||| .......... .......... .......... .......... .......... .......AGT 566 GAGTACCAAC GGGGAGTTAG CGCCTGGAAC TTTGATTTGG AGGATTTAAA GCTTCAGGCT 115634 || ||||||| | || ||||| ||||||||| |||||| ||| ||||||| || | |||| ||| GAATACCAAC GAGGTGTTAG TGCCTGGAAC TTTGATCTGG AGGATTTGAA GTTTCAAGCT 626 TCACTGGTAT ATATATGAGA GGCGTCTCTT TATATCTGAT AAAGACGCTC TTTCACTTTT 115574 ||| || TCAATG.... .......... .......... .......... .......... .......... 632 GCTCCATGAA TTTTGCCATC CTAAATTTAA TAGTCTCTCG ATTTCTGGGG CAGGTACAGG 115514 || || | .......... .......... .......... .......... .......... ...GTGCAAG 639 ACGATGATGA AATAC 115499 | ||||| || ||||| ATGATGACGA AATAC 654 hqPGS_C08SLm0006K11.1-_SGN-E394843+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) ******************************************************************************** EST sequence 130 +strand 513 n (File: SGN-E397023+) 1 TTAGGGCTGG GAATATATTG TTGGACGCTA ATGGGGTATG AAAGCTCGCT GACTTTGGTG 61 TCTCTGCATG CCTGTTTGAC AGTGGTGACA GGCACCGCTC TAGGAATACA TTTACGGGAA 121 CTCCGTGCTG GATGGCACCA GAAGTTTTGC AGCCTGGAAC TGGATATGAT TTCAAGGCTG 181 ACATTTGGTC GTTTGAAATA ACTGCCTAAC AGCTGGCTCA TGGTCATGCA CCTTTTTCGA 241 AGTACCCTCC AATGAAGGTT CTGCTGATGA CCATAAACAG TGCTCCTCCT GGACTTGACT 301 ATGACCGTGA TACGAAATTC TCGAAGTCTT TCCAGGAAAT GGTTGCCATG TGCTTGGTGA 361 AATATCAAAC TAAAAGGCCA ACTGCTGAAA AATTGTTGAA GCACATTTTT TTCAAAAAAG 421 TTAAGCCTCC AAAGCTGTCT GTAAAGAAAC TGTTTGCCGA CTTACCATCG CTAGGGAGTC 481 GAGTAAAAAA TGCTCCATCT TAAAGATGCT GCA Predicted gene structure (within gDNA segment 119811 to 113937): Exon 1 118153 118029 ( 125 n); cDNA 6 130 ( 125 n); score: 0.832 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 2 117920 117876 ( 45 n); cDNA 131 175 ( 45 n); score: 0.956 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 0.96), Pa: 0.998 (s: 0.84) Exon 3 117170 117089 ( 82 n); cDNA 176 257 ( 82 n); score: 0.878 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 0.86), Pa: 0.890 (s: 0.82) Exon 4 116994 116926 ( 69 n); cDNA 258 326 ( 69 n); score: 0.797 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 0.80), Pa: 0.974 (s: 0.90) Exon 5 116692 116522 ( 171 n); cDNA 327 498 ( 172 n); score: 0.798 Intron 5 116521 116440 ( 82 n); Pd: 0.984 (s: 0.66), Pa: 0.999 (s: 0) Exon 6 116439 116426 ( 14 n); cDNA 499 512 ( 14 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E397023+ 0.822 506 0.986 C PGS_C08SLm0006K11.1-_SGN-E397023+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116426) Alignment (genomic DNA sequence = upper lines): GCTGGGAATA TATTACTGGA CACTAATGGG GCAGTAAAGC TGGGCGATTT TGGTGTTTCC 118094 |||||||||| |||| |||| | |||||||| | | ||||| | | || || |||||| || GCTGGGAATA TATTGTTGGA CGCTAATGGG GTATGAAAGC TCGCTGACTT TGGTGTCTCT 65 GCATGCATGT TTGACAGTGG TGATAGACAG CGGTCTAGGA ATACCTTTGT AGGAACTCCG 118034 |||||| ||| |||||||||| ||| || || || ||||||| |||| ||| ||||||||| GCATGCCTGT TTGACAGTGG TGACAGGCAC CGCTCTAGGA ATACATTTAC GGGAACTCCG 125 TGCTGGTGAG CATATAGGCA TCCTTTCAGT CACTTCCTAT CTATAATTGT TTCTATGCAA 117974 ||||| TGCTG..... .......... .......... .......... .......... .......... 130 GTTTTTTCGT GCTCTACATG TCTATCAAGG CATGAACTAC TTTTATTTTG TAGGATGGCA 117914 ||||||| .......... .......... .......... .......... .......... ...GATGGCA 137 CCAGAAGTTC TGCAGCCTGG AACTGGATAT GATTTTAAGT GAGTTTTCTC TGTCACGGTG 117854 ||||||||| |||||||||| |||||||||| ||||| || CCAGAAGTTT TGCAGCCTGG AACTGGATAT GATTTCAA.. .......... .......... 175 TAAGATCTTG ATGGTTTCAT ATGTTATGAT GTACATTTTT CATTTAATGG TTGACTGAGA 117794 .......... .......... .......... .......... .......... .......... 175 GCTATTTGAG AAAGCTGAAG GCTGAATTCT TTTTGAAATT GTACCATTGA ATTACTTTAC 117734 .......... .......... .......... .......... .......... .......... 175 TGAACTTTTA GTGCTGAAAG GTATTAAGTT TATGCATTTT AATCCTGTCA CTGAATTCAA 117674 .......... .......... .......... .......... .......... .......... 175 ATATGAATTA TCCTCTTTAG TATTTTTTTG AAATTAAAAC TGAGTGTATT AATTTATCAC 117614 .......... .......... .......... .......... .......... .......... 175 TAGATAATGC TAGCTTCTTG GACTTAATCA GGTTGTAATG ATGAAGCTTA TATCATTCAT 117554 .......... .......... .......... .......... .......... .......... 175 GATATAACAT ATTCCAAGCA TTTTGTTCAT GTAATAAGCA ACTACGGTTG ATTAGAAACT 117494 .......... .......... .......... .......... .......... .......... 175 TGTTCTCGGA TATGTGGTCT TTCAAACTTT AGTGATAACT AAATTTTGGT TTACTTGAAA 117434 .......... .......... .......... .......... .......... .......... 175 TTGGTAAAGC AATTTAAGTG GCGCATGGAG TATTACATGA TTTTGAGTTT TTGTATAAAT 117374 .......... .......... .......... .......... .......... .......... 175 AAGTCTTATT TTTTAATGAC TTAATCTGGT AATTTTAAGT GCTTAAAACA GTTATCAAAC 117314 .......... .......... .......... .......... .......... .......... 175 ACACTTTTAG ATGAGATTCT GAATATTGAC ATAAAGGTCT ACATTTTCTT CTTGTCTAAG 117254 .......... .......... .......... .......... .......... .......... 175 TATAATGCTT GTGTACTTAT GCAGGGTCTA TGAGAGTATT TAGATTATCA ATGCTATTGA 117194 .......... .......... .......... .......... .......... .......... 175 CTCTAATTTT CTTCCTTCTA CAGGGCTGAC ATTTGGTCAT TTGGAATAAC TGCCCTGGAA 117134 ||||||| |||||||| | ||| |||||| |||| | .......... .......... ...GGCTGAC ATTTGGTCGT TTGAAATAAC TGCCTAACAG 212 TTGGCTCATG GTCATGCACC ATTTTCAAAG TACCCTCCAA TGAAGGTATC TATTCATTTC 117074 ||||||||| |||||||||| ||||| ||| |||||||||| ||||| CTGGCTCATG GTCATGCACC TTTTTCGAAG TACCCTCCAA TGAAG..... .......... 257 CAAGAGGGTA CAACAACAAT ACTTTAACTT GGTGCTTGAG TATGCATTAT TTAAGTTACC 117014 .......... .......... .......... .......... .......... .......... 257 CTCTGTTCTC TCGCCACAGG TACTTCTGAT GACAATACAG AATGCCCCTC CTGGACTTGA 116954 | | || ||||| ||| ||| | | ||| |||| |||||||||| .......... .........G TTCTGCTGAT GACCATAAAC AGTGCTCCTC CTGGACTTGA 298 TTATGACAGA GACAAAAAAT TCTCTAAGGT AGTAATTCCA TTTTTGGAAT TATTTCATAA 116894 |||||| | || | |||| |||| ||| CTATGACCGT GATACGAAAT TCTCGAAG.. .......... .......... .......... 326 GTAGGTATTA AATACTGGTT TAATTCGACT GTACACACCC CCCCCCCCCC CCCAAAAAAA 116834 .......... .......... .......... .......... .......... .......... 326 AAAAAAAAGA AAGAAAGAAA AGTTAGTCGT ATCATTTGCA TTTGTACATG GAGATATTTG 116774 .......... .......... .......... .......... .......... .......... 326 TATATGTTGA TCTGCTACGT GCTTCAATCT TTATTTTGTA TCATGTACGA AGAACAAAAT 116714 .......... .......... .......... .......... .......... .......... 326 GGTTTTTACT TGTCGTAACA GTCATTCAAG GAAATGGTTG CGATGTGTTT GGTGAAAGAT 116654 || ||| || |||||||||| | ||||| || ||||||| || .......... .......... .TCTTTCCAG GAAATGGTTG CCATGTGCTT GGTGAAATAT 365 CAAACTAAAA GGCCAACTGC TGAGAAGTTG TTGAAGCATT CATTTTTCAA ATATGCTAAG 116594 |||||||||| |||||||||| ||| || ||| |||||||| |||||||| | | | |||| CAAACTAAAA GGCCAACTGC TGAAAAATTG TTGAAGCACA TTTTTTTCAA AAAAGTTAAG 425 CCCCCAGAGC TTTCTGTAAA AAAACTCTTT GCTGACCTGC CACCACTTTG GAATCGAGTT 116534 || ||| ||| | |||||||| ||||| ||| || ||| | | || | || | || |||||| CCTCCAAAGC TGTCTGTAAA GAAACTGTTT GCCGACTTAC CATCGCTAGG GAGTCGAGTA 485 AAAGCT-CTA CAGGTATTTC ATGGTATCGT TGTTCTAGGG TTGCTTAATT TTCCTACTTA 116475 ||| | || || AAAAATGCTC CAT....... .......... .......... .......... .......... 498 TCATTGTTTA TTGCTGATTG ATGAAATTAT TGCAGCTTAA AGATGCTGC 116426 ||||| ||||||||| .......... .......... .......... .....CTTAA AGATGCTGC 512 hqPGS_C08SLm0006K11.1-_SGN-E397023+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116426) ******************************************************************************** EST sequence 89 +strand 468 n (File: SGN-E294859+) 1 CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 61 GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTGGATGGC ACCAGAAGTT CTGCAGCCTG 121 GAACTGGATA TGATTTTAAG GCTGACATTT GGTCATTTGG AATAACTGCC CTGGAATTGG 181 CTCATGGTCA TGCACCATTT TCAAAGTACC CTCCAATGAA GGTACTTCTG ATGACAATAC 241 AGAATGCCCC TCCTGGACTT GATTATGACA GAGACAAAAA ATTCTCTAAG TCATTCAAGG 301 AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 361 TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 421 CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA GCTTAAAG Predicted gene structure (within gDNA segment 118722 to 115842): Exon 1 118122 118029 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 117920 117876 ( 45 n); cDNA 95 139 ( 45 n); score: 1.000 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 117170 117089 ( 82 n); cDNA 140 221 ( 82 n); score: 1.000 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 116994 116926 ( 69 n); cDNA 222 290 ( 69 n); score: 1.000 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 5 116692 116522 ( 171 n); cDNA 291 461 ( 171 n); score: 1.000 Intron 5 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 0) Exon 6 116439 116433 ( 7 n); cDNA 462 468 ( 7 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E294859+ 1.000 468 1.000 C PGS_C08SLm0006K11.1-_SGN-E294859+ (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) Alignment (genomic DNA sequence = upper lines): CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 118063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 60 GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTGGTGAGC ATATAGGCAT CCTTTCAGTC 118003 |||||||||| |||||||||| |||||||||| |||| GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTG...... .......... .......... 94 ACTTCCTATC TATAATTGTT TCTATGCAAG TTTTTTCGTG CTCTACATGT CTATCAAGGC 117943 .......... .......... .......... .......... .......... .......... 94 ATGAACTACT TTTATTTTGT AGGATGGCAC CAGAAGTTCT GCAGCCTGGA ACTGGATATG 117883 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GATGGCAC CAGAAGTTCT GCAGCCTGGA ACTGGATATG 132 ATTTTAAGTG AGTTTTCTCT GTCACGGTGT AAGATCTTGA TGGTTTCATA TGTTATGATG 117823 ||||||| ATTTTAA... .......... .......... .......... .......... .......... 139 TACATTTTTC ATTTAATGGT TGACTGAGAG CTATTTGAGA AAGCTGAAGG CTGAATTCTT 117763 .......... .......... .......... .......... .......... .......... 139 TTTGAAATTG TACCATTGAA TTACTTTACT GAACTTTTAG TGCTGAAAGG TATTAAGTTT 117703 .......... .......... .......... .......... .......... .......... 139 ATGCATTTTA ATCCTGTCAC TGAATTCAAA TATGAATTAT CCTCTTTAGT ATTTTTTTGA 117643 .......... .......... .......... .......... .......... .......... 139 AATTAAAACT GAGTGTATTA ATTTATCACT AGATAATGCT AGCTTCTTGG ACTTAATCAG 117583 .......... .......... .......... .......... .......... .......... 139 GTTGTAATGA TGAAGCTTAT ATCATTCATG ATATAACATA TTCCAAGCAT TTTGTTCATG 117523 .......... .......... .......... .......... .......... .......... 139 TAATAAGCAA CTACGGTTGA TTAGAAACTT GTTCTCGGAT ATGTGGTCTT TCAAACTTTA 117463 .......... .......... .......... .......... .......... .......... 139 GTGATAACTA AATTTTGGTT TACTTGAAAT TGGTAAAGCA ATTTAAGTGG CGCATGGAGT 117403 .......... .......... .......... .......... .......... .......... 139 ATTACATGAT TTTGAGTTTT TGTATAAATA AGTCTTATTT TTTAATGACT TAATCTGGTA 117343 .......... .......... .......... .......... .......... .......... 139 ATTTTAAGTG CTTAAAACAG TTATCAAACA CACTTTTAGA TGAGATTCTG AATATTGACA 117283 .......... .......... .......... .......... .......... .......... 139 TAAAGGTCTA CATTTTCTTC TTGTCTAAGT ATAATGCTTG TGTACTTATG CAGGGTCTAT 117223 .......... .......... .......... .......... .......... .......... 139 GAGAGTATTT AGATTATCAA TGCTATTGAC TCTAATTTTC TTCCTTCTAC AGGGCTGACA 117163 |||||||| .......... .......... .......... .......... .......... ..GGCTGACA 147 TTTGGTCATT TGGAATAACT GCCCTGGAAT TGGCTCATGG TCATGCACCA TTTTCAAAGT 117103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCATT TGGAATAACT GCCCTGGAAT TGGCTCATGG TCATGCACCA TTTTCAAAGT 207 ACCCTCCAAT GAAGGTATCT ATTCATTTCC AAGAGGGTAC AACAACAATA CTTTAACTTG 117043 |||||||||| |||| ACCCTCCAAT GAAG...... .......... .......... .......... .......... 221 GTGCTTGAGT ATGCATTATT TAAGTTACCC TCTGTTCTCT CGCCACAGGT ACTTCTGATG 116983 || |||||||||| .......... .......... .......... .......... ........GT ACTTCTGATG 233 ACAATACAGA ATGCCCCTCC TGGACTTGAT TATGACAGAG ACAAAAAATT CTCTAAGGTA 116923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACAATACAGA ATGCCCCTCC TGGACTTGAT TATGACAGAG ACAAAAAATT CTCTAAG... 290 GTAATTCCAT TTTTGGAATT ATTTCATAAG TAGGTATTAA ATACTGGTTT AATTCGACTG 116863 .......... .......... .......... .......... .......... .......... 290 TACACACCCC CCCCCCCCCC CCAAAAAAAA AAAAAAAGAA AGAAAGAAAA GTTAGTCGTA 116803 .......... .......... .......... .......... .......... .......... 290 TCATTTGCAT TTGTACATGG AGATATTTGT ATATGTTGAT CTGCTACGTG CTTCAATCTT 116743 .......... .......... .......... .......... .......... .......... 290 TATTTTGTAT CATGTACGAA GAACAAAATG GTTTTTACTT GTCGTAACAG TCATTCAAGG 116683 |||||||||| .......... .......... .......... .......... .......... TCATTCAAGG 300 AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 116623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 360 TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 116563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 420 CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA GGTATTTCAT GGTATCGTTG 116503 |||||||||| |||||||||| |||||||||| |||||||||| | CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA G......... .......... 461 TTCTAGGGTT GCTTAATTTT CCTACTTATC ATTGTTTATT GCTGATTGAT GAAATTATTG 116443 .......... .......... .......... .......... .......... .......... 461 CAGCTTAAAG 116433 ||||||| ...CTTAAAG 468 hqPGS_C08SLm0006K11.1-_SGN-E294859+ (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) ******************************************************************************** EST sequence 90 +strand 468 n (File: SGN-E294860+) 1 CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 61 GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTGGATGGC ACCAGAAGTT CTGCAGCCTG 121 GAACTGGATA TGATTTTAAG GCTGACATTT GGTCATTTGG AATAACTGCC CTGGAATTGG 181 CTCATGGTCA TGCACCATTT TCAAAGTACC CTCCAATGAA GGTACTTCTG ATGACAATAC 241 AGAATGCCCC TCCTGGACTT GATTATGACA GAGACAAAAA ATTCTCTAAG TCATTCAAGG 301 AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 361 TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 421 CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA GCTTAAAG Predicted gene structure (within gDNA segment 118722 to 115842): Exon 1 118122 118029 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 117920 117876 ( 45 n); cDNA 95 139 ( 45 n); score: 1.000 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 117170 117089 ( 82 n); cDNA 140 221 ( 82 n); score: 1.000 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 116994 116926 ( 69 n); cDNA 222 290 ( 69 n); score: 1.000 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 5 116692 116522 ( 171 n); cDNA 291 461 ( 171 n); score: 1.000 Intron 5 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 0) Exon 6 116439 116433 ( 7 n); cDNA 462 468 ( 7 n); score: 1.000 MATCH C08SLm0006K11.1- SGN-E294860+ 1.000 468 1.000 C PGS_C08SLm0006K11.1-_SGN-E294860+ (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) Alignment (genomic DNA sequence = upper lines): CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 118063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAAAGCT GGGCGATTTT GGTGTTTCCG CATGCATGTT TGACAGTGGT GATAGACAGC 60 GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTGGTGAGC ATATAGGCAT CCTTTCAGTC 118003 |||||||||| |||||||||| |||||||||| |||| GGTCTAGGAA TACCTTTGTA GGAACTCCGT GCTG...... .......... .......... 94 ACTTCCTATC TATAATTGTT TCTATGCAAG TTTTTTCGTG CTCTACATGT CTATCAAGGC 117943 .......... .......... .......... .......... .......... .......... 94 ATGAACTACT TTTATTTTGT AGGATGGCAC CAGAAGTTCT GCAGCCTGGA ACTGGATATG 117883 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GATGGCAC CAGAAGTTCT GCAGCCTGGA ACTGGATATG 132 ATTTTAAGTG AGTTTTCTCT GTCACGGTGT AAGATCTTGA TGGTTTCATA TGTTATGATG 117823 ||||||| ATTTTAA... .......... .......... .......... .......... .......... 139 TACATTTTTC ATTTAATGGT TGACTGAGAG CTATTTGAGA AAGCTGAAGG CTGAATTCTT 117763 .......... .......... .......... .......... .......... .......... 139 TTTGAAATTG TACCATTGAA TTACTTTACT GAACTTTTAG TGCTGAAAGG TATTAAGTTT 117703 .......... .......... .......... .......... .......... .......... 139 ATGCATTTTA ATCCTGTCAC TGAATTCAAA TATGAATTAT CCTCTTTAGT ATTTTTTTGA 117643 .......... .......... .......... .......... .......... .......... 139 AATTAAAACT GAGTGTATTA ATTTATCACT AGATAATGCT AGCTTCTTGG ACTTAATCAG 117583 .......... .......... .......... .......... .......... .......... 139 GTTGTAATGA TGAAGCTTAT ATCATTCATG ATATAACATA TTCCAAGCAT TTTGTTCATG 117523 .......... .......... .......... .......... .......... .......... 139 TAATAAGCAA CTACGGTTGA TTAGAAACTT GTTCTCGGAT ATGTGGTCTT TCAAACTTTA 117463 .......... .......... .......... .......... .......... .......... 139 GTGATAACTA AATTTTGGTT TACTTGAAAT TGGTAAAGCA ATTTAAGTGG CGCATGGAGT 117403 .......... .......... .......... .......... .......... .......... 139 ATTACATGAT TTTGAGTTTT TGTATAAATA AGTCTTATTT TTTAATGACT TAATCTGGTA 117343 .......... .......... .......... .......... .......... .......... 139 ATTTTAAGTG CTTAAAACAG TTATCAAACA CACTTTTAGA TGAGATTCTG AATATTGACA 117283 .......... .......... .......... .......... .......... .......... 139 TAAAGGTCTA CATTTTCTTC TTGTCTAAGT ATAATGCTTG TGTACTTATG CAGGGTCTAT 117223 .......... .......... .......... .......... .......... .......... 139 GAGAGTATTT AGATTATCAA TGCTATTGAC TCTAATTTTC TTCCTTCTAC AGGGCTGACA 117163 |||||||| .......... .......... .......... .......... .......... ..GGCTGACA 147 TTTGGTCATT TGGAATAACT GCCCTGGAAT TGGCTCATGG TCATGCACCA TTTTCAAAGT 117103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCATT TGGAATAACT GCCCTGGAAT TGGCTCATGG TCATGCACCA TTTTCAAAGT 207 ACCCTCCAAT GAAGGTATCT ATTCATTTCC AAGAGGGTAC AACAACAATA CTTTAACTTG 117043 |||||||||| |||| ACCCTCCAAT GAAG...... .......... .......... .......... .......... 221 GTGCTTGAGT ATGCATTATT TAAGTTACCC TCTGTTCTCT CGCCACAGGT ACTTCTGATG 116983 || |||||||||| .......... .......... .......... .......... ........GT ACTTCTGATG 233 ACAATACAGA ATGCCCCTCC TGGACTTGAT TATGACAGAG ACAAAAAATT CTCTAAGGTA 116923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACAATACAGA ATGCCCCTCC TGGACTTGAT TATGACAGAG ACAAAAAATT CTCTAAG... 290 GTAATTCCAT TTTTGGAATT ATTTCATAAG TAGGTATTAA ATACTGGTTT AATTCGACTG 116863 .......... .......... .......... .......... .......... .......... 290 TACACACCCC CCCCCCCCCC CCAAAAAAAA AAAAAAAGAA AGAAAGAAAA GTTAGTCGTA 116803 .......... .......... .......... .......... .......... .......... 290 TCATTTGCAT TTGTACATGG AGATATTTGT ATATGTTGAT CTGCTACGTG CTTCAATCTT 116743 .......... .......... .......... .......... .......... .......... 290 TATTTTGTAT CATGTACGAA GAACAAAATG GTTTTTACTT GTCGTAACAG TCATTCAAGG 116683 |||||||||| .......... .......... .......... .......... .......... TCATTCAAGG 300 AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 116623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTGC GATGTGTTTG GTGAAAGATC AAACTAAAAG GCCAACTGCT GAGAAGTTGT 360 TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 116563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCATTC ATTTTTCAAA TATGCTAAGC CCCCAGAGCT TTCTGTAAAA AAACTCTTTG 420 CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA GGTATTTCAT GGTATCGTTG 116503 |||||||||| |||||||||| |||||||||| |||||||||| | CTGACCTGCC ACCACTTTGG AATCGAGTTA AAGCTCTACA G......... .......... 461 TTCTAGGGTT GCTTAATTTT CCTACTTATC ATTGTTTATT GCTGATTGAT GAAATTATTG 116443 .......... .......... .......... .......... .......... .......... 461 CAGCTTAAAG 116433 ||||||| ...CTTAAAG 468 hqPGS_C08SLm0006K11.1-_SGN-E294860+ (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) ******************************************************************************** EST sequence 108 +strand 417 n (File: SGN-E200386+) 1 TAAGGCTGGG AATATATTGC TGGACACTAA TGGGGTAGTA AAGCTCGCTG ACTTTGGTGT 61 CTCTGCATGC ATGTTTGACA GTGGTGACAG GCAGCGCTCT AGGAATACAT TTACAGGAAC 121 TCCGTGCTGG ATGGCACCAG AAGTTTTGCA GCCTGGAACT GGATATGATT TCAAGGCTGA 181 CATTTGGTCG TTTGGAATAA CTGCCTTAGA GCTGGCTCAT GGTCATGCAC CATTTTCGAA 241 GTACCCTCCA ATGAAGGTTC TGCTGATGAC CATAAACAGT GCTCCTCCTG GACTTGACTA 301 TGACCGTGAT AAGAAATTCT CGAAGTCTTT CAAGGAAATG GTTGCCATGT GCTTGGTGAA 361 AGATCAAACT AAAAGGCCAA CTGCTGAAAA ATTGTTGAAG CACATTTTTT TCAAAAA Predicted gene structure (within gDNA segment 118775 to 115721): Exon 1 118153 118029 ( 125 n); cDNA 5 129 ( 125 n); score: 0.888 Intron 1 118028 117921 ( 108 n); Pd: 0.976 (s: 0.88), Pa: 0.998 (s: 0.96) Exon 2 117920 117876 ( 45 n); cDNA 130 174 ( 45 n); score: 0.956 Intron 2 117875 117171 ( 705 n); Pd: 0.960 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 117170 117089 ( 82 n); cDNA 175 256 ( 82 n); score: 0.927 Intron 3 117088 116995 ( 94 n); Pd: 0.981 (s: 0.92), Pa: 0.890 (s: 0.82) Exon 4 116994 116926 ( 69 n); cDNA 257 325 ( 69 n); score: 0.812 Intron 4 116925 116693 ( 233 n); Pd: 0.998 (s: 0.82), Pa: 0.974 (s: 0.94) Exon 5 116692 116603 ( 90 n); cDNA 326 415 ( 90 n); score: 0.900 MATCH C08SLm0006K11.1- SGN-E200386+ 0.885 411 0.986 C PGS_C08SLm0006K11.1-_SGN-E200386+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116603) Alignment (genomic DNA sequence = upper lines): GCTGGGAATA TATTACTGGA CACTAATGGG GCAGTAAAGC TGGGCGATTT TGGTGTTTCC 118094 |||||||||| |||| ||||| |||||||||| | |||||||| | | || || |||||| || GCTGGGAATA TATTGCTGGA CACTAATGGG GTAGTAAAGC TCGCTGACTT TGGTGTCTCT 64 GCATGCATGT TTGACAGTGG TGATAGACAG CGGTCTAGGA ATACCTTTGT AGGAACTCCG 118034 |||||||||| |||||||||| ||| || ||| || ||||||| |||| ||| |||||||||| GCATGCATGT TTGACAGTGG TGACAGGCAG CGCTCTAGGA ATACATTTAC AGGAACTCCG 124 TGCTGGTGAG CATATAGGCA TCCTTTCAGT CACTTCCTAT CTATAATTGT TTCTATGCAA 117974 ||||| TGCTG..... .......... .......... .......... .......... .......... 129 GTTTTTTCGT GCTCTACATG TCTATCAAGG CATGAACTAC TTTTATTTTG TAGGATGGCA 117914 ||||||| .......... .......... .......... .......... .......... ...GATGGCA 136 CCAGAAGTTC TGCAGCCTGG AACTGGATAT GATTTTAAGT GAGTTTTCTC TGTCACGGTG 117854 ||||||||| |||||||||| |||||||||| ||||| || CCAGAAGTTT TGCAGCCTGG AACTGGATAT GATTTCAA.. .......... .......... 174 TAAGATCTTG ATGGTTTCAT ATGTTATGAT GTACATTTTT CATTTAATGG TTGACTGAGA 117794 .......... .......... .......... .......... .......... .......... 174 GCTATTTGAG AAAGCTGAAG GCTGAATTCT TTTTGAAATT GTACCATTGA ATTACTTTAC 117734 .......... .......... .......... .......... .......... .......... 174 TGAACTTTTA GTGCTGAAAG GTATTAAGTT TATGCATTTT AATCCTGTCA CTGAATTCAA 117674 .......... .......... .......... .......... .......... .......... 174 ATATGAATTA TCCTCTTTAG TATTTTTTTG AAATTAAAAC TGAGTGTATT AATTTATCAC 117614 .......... .......... .......... .......... .......... .......... 174 TAGATAATGC TAGCTTCTTG GACTTAATCA GGTTGTAATG ATGAAGCTTA TATCATTCAT 117554 .......... .......... .......... .......... .......... .......... 174 GATATAACAT ATTCCAAGCA TTTTGTTCAT GTAATAAGCA ACTACGGTTG ATTAGAAACT 117494 .......... .......... .......... .......... .......... .......... 174 TGTTCTCGGA TATGTGGTCT TTCAAACTTT AGTGATAACT AAATTTTGGT TTACTTGAAA 117434 .......... .......... .......... .......... .......... .......... 174 TTGGTAAAGC AATTTAAGTG GCGCATGGAG TATTACATGA TTTTGAGTTT TTGTATAAAT 117374 .......... .......... .......... .......... .......... .......... 174 AAGTCTTATT TTTTAATGAC TTAATCTGGT AATTTTAAGT GCTTAAAACA GTTATCAAAC 117314 .......... .......... .......... .......... .......... .......... 174 ACACTTTTAG ATGAGATTCT GAATATTGAC ATAAAGGTCT ACATTTTCTT CTTGTCTAAG 117254 .......... .......... .......... .......... .......... .......... 174 TATAATGCTT GTGTACTTAT GCAGGGTCTA TGAGAGTATT TAGATTATCA ATGCTATTGA 117194 .......... .......... .......... .......... .......... .......... 174 CTCTAATTTT CTTCCTTCTA CAGGGCTGAC ATTTGGTCAT TTGGAATAAC TGCCCTGGAA 117134 ||||||| |||||||| | |||||||||| |||| | || .......... .......... ...GGCTGAC ATTTGGTCGT TTGGAATAAC TGCCTTAGAG 211 TTGGCTCATG GTCATGCACC ATTTTCAAAG TACCCTCCAA TGAAGGTATC TATTCATTTC 117074 ||||||||| |||||||||| |||||| ||| |||||||||| ||||| CTGGCTCATG GTCATGCACC ATTTTCGAAG TACCCTCCAA TGAAG..... .......... 256 CAAGAGGGTA CAACAACAAT ACTTTAACTT GGTGCTTGAG TATGCATTAT TTAAGTTACC 117014 .......... .......... .......... .......... .......... .......... 256 CTCTGTTCTC TCGCCACAGG TACTTCTGAT GACAATACAG AATGCCCCTC CTGGACTTGA 116954 | | || ||||| ||| ||| | | ||| |||| |||||||||| .......... .........G TTCTGCTGAT GACCATAAAC AGTGCTCCTC CTGGACTTGA 297 TTATGACAGA GACAAAAAAT TCTCTAAGGT AGTAATTCCA TTTTTGGAAT TATTTCATAA 116894 |||||| | || || |||| |||| ||| CTATGACCGT GATAAGAAAT TCTCGAAG.. .......... .......... .......... 325 GTAGGTATTA AATACTGGTT TAATTCGACT GTACACACCC CCCCCCCCCC CCCAAAAAAA 116834 .......... .......... .......... .......... .......... .......... 325 AAAAAAAAGA AAGAAAGAAA AGTTAGTCGT ATCATTTGCA TTTGTACATG GAGATATTTG 116774 .......... .......... .......... .......... .......... .......... 325 TATATGTTGA TCTGCTACGT GCTTCAATCT TTATTTTGTA TCATGTACGA AGAACAAAAT 116714 .......... .......... .......... .......... .......... .......... 325 GGTTTTTACT TGTCGTAACA GTCATTCAAG GAAATGGTTG CGATGTGTTT GGTGAAAGAT 116654 || |||||| |||||||||| | ||||| || |||||||||| .......... .......... .TCTTTCAAG GAAATGGTTG CCATGTGCTT GGTGAAAGAT 364 CAAACTAAAA GGCCAACTGC TGAGAAGTTG TTGAAGCATT CATTTTTCAA A 116603 |||||||||| |||||||||| ||| || ||| |||||||| |||||||| | CAAACTAAAA GGCCAACTGC TGAAAAATTG TTGAAGCACA TTTTTTTCAA A 415 hqPGS_C08SLm0006K11.1-_SGN-E200386+ (118153 118029,117920 117876,117170 117089,116994 116926,116692 116603) ******************************************************************************** EST sequence 107 +strand 755 n (File: SGN-E335423+) 1 TTCTCCGATG CTTCTTCCGT CAACCTTCAA CGGCCATTTC CACAATCGGC AACCTTATAC 61 CTTCACTTTT ACAACAAAGC GATTTTGCTT ATTCGGTCCC AGCGGCGATG GGCGGCGGCG 121 GTCCCAGAAA TTATTCGGCG AATCCCAAAT GATTACAAGC TTCTCGAAGA AGTCGGTTAT 181 GGAGCGAGTG CAACAGTTTA TAGAGCGATC TATCTTCCTT ACAATGAAGT TATCGCAGTC 241 AAGTGCTTGG ATCTCGATCG CTGTAACAGC AATCTGGATG ACATACGCAG GGAAGCTCAA 301 ACTATGAGTT TGATAGACCA TCCTAATGTA ATAAAGTCAT TCTGTTCATT TGTTGTTGAG 361 AACTACCTAT GGGTGGTAAT GCCCTTCATG GCTGAGGGCT CTTGTCTACA TCTCATGAAA 421 ATAGCATATC CAGATGGATT CGAAGAATCT GCTATTTGTT CTATGTTGAA GGAAACTCTC 481 AAGGCGTTGG AATATCTCCA TCGACATGGG CACATACATC GAGATGTGAA GGCTGGGAAT 541 ATATTACTGG ACACTAATGG GGCAGTAAAG CTGGGCGATT TTTGGTGTTT CCGCATGCAT 601 GTTTGACAGT GGTGATAGAC AGCGGTCTAG GAATACCTTT GTAGGAACTC CGTGCTGGAT 661 GGCACCAGAA GTTCTGCAGC CTGGAACTGG ATATGATTTT AAGGCTGACA TTNGGTCATT 721 TGGAATAACT GCCCTGGAAT TGGCTCATGG TCATG Predicted gene structure (within gDNA segment 122839 to 116508): Exon 1 121587 121317 ( 271 n); cDNA 1 276 ( 276 n); score: 0.950 Intron 1 121316 118490 (2827 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 118489 118235 ( 255 n); cDNA 277 531 ( 255 n); score: 1.000 Intron 2 118234 118154 ( 81 n); Pd: 0.998 (s: 1.00), Pa: 0.966 (s: 0.95) Exon 3 118153 118029 ( 125 n); cDNA 532 657 ( 126 n); score: 0.980 Intron 3 118028 117921 ( 108 n); Pd: 0.976 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 117920 117876 ( 45 n); cDNA 658 702 ( 45 n); score: 1.000 Intron 4 117875 117171 ( 705 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 5 117170 117118 ( 53 n); cDNA 703 755 ( 53 n); score: 0.981 MATCH C08SLm0006K11.1- SGN-E335423+ 0.976 749 0.992 C PGS_C08SLm0006K11.1-_SGN-E335423+ (121587 121317,118489 118235,118153 118029,117920 117876,117170 117118) Alignment (genomic DNA sequence = upper lines): TTCTCCGATG C-TCTTCCGT CAA-CTTCAA CGGCCATTTC CACAATCGGC AAC-TTATA- 121532 |||||||||| | |||||||| ||| |||||| |||||||||| |||||||||| ||| ||||| TTCTCCGATG CTTCTTCCGT CAACCTTCAA CGGCCATTTC CACAATCGGC AACCTTATAC 60 CTTCACTTTT ATAACAAAGC GATTTTGCTT ATTCGGTCCC AGCGGCGATG GGCGGCGGCG 121472 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCACTTTT ACAACAAAGC GATTTTGCTT ATTCGGTCCC AGCGGCGATG GGCGGCGGCG 120 GTCCCAGAAA TTATTCGGCG AAT-CCAAAT GATTACAAGC TTCTCGAAGA AGTCGGTTAT 121413 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GTCCCAGAAA TTATTCGGCG AATCCCAAAT GATTACAAGC TTCTCGAAGA AGTCGGTTAT 180 GGAGCGAGTG CAACAGTTTA TAGAGCGATC TATCTTCCTT ACAATGAAGT TATCGCAGTC 121353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCGAGTG CAACAGTTTA TAGAGCGATC TATCTTCCTT ACAATGAAGT TATCGCAGTC 240 AAGTGCTTGG ATCTCGATCG CTGTAACAGC AATCTGGTTT GTCTATATTT CTTCTGCTTT 121293 |||||||||| |||||||||| |||||||||| |||||| AAGTGCTTGG ATCTCGATCG CTGTAACAGC AATCTG.... .......... .......... 276 CTGCTCTCTC AGTTTACTGA TGGAAATAAT TGACTTTGAC TTGCGGATTA ATTGATTTTT 121233 .......... .......... .......... .......... .......... .......... 276 TGCTTTGTGA TTTCTAGTAT AGAATGATAG ATGTTGTTTT AGTTTATCTT TATGGATATA 121173 .......... .......... .......... .......... .......... .......... 276 GGTGGTTAGA ATTGCAAATT GGCTATAGAG ATCATAGAGT CGAAAGGACG TGGCTTCAAT 121113 .......... .......... .......... .......... .......... .......... 276 TGTGATTTCC TTGTTTGCTT TGACTTGTCA TACGTCCGTG TTTTTACTCC TTGTATTTTG 121053 .......... .......... .......... .......... .......... .......... 276 TCAGCAGTCA ATATAACAAG ACTCAATTCT GGTGTCTCCA AGTGATGTGA TTGAACAAAG 120993 .......... .......... .......... .......... .......... .......... 276 TTACTGATTT TACCCTGCGC ACCCAAAAGG GTAGCGGCTG TGGGTTTCTG TCATAAAAAA 120933 .......... .......... .......... .......... .......... .......... 276 AAGTCACTGA TTTTATATTA TTGTTGACCC TGTATTAATT TCACACTGTT GGAGTTCATT 120873 .......... .......... .......... .......... .......... .......... 276 GACGAGCCGA GGTTCTTCCC AAAACATCTT CTCTACCTCT TAAGAGGTAG AGGTAAGATT 120813 .......... .......... .......... .......... .......... .......... 276 TGCATACACT CTACCCTTCT CATACCCCAC TTAGTTGGAT TTCACTGGGT ATGTCGCTGT 120753 .......... .......... .......... .......... .......... .......... 276 TGTTGGTGTT CATTGTCGAG CCGAGTGTCT TTCGAGACAA CCTCTCTACC TCCTAGAGGT 120693 .......... .......... .......... .......... .......... .......... 276 AATGGTAAGG TTTACGTACA TTCTACCCTC CCCGACTCCA TGGAGTCGGA TTTCACTGGG 120633 .......... .......... .......... .......... .......... .......... 276 TACATCATTG TTGTTGGTGC CAATTGGCAC TAAATGCGAA TGCATGGATA GATATAGAAT 120573 .......... .......... .......... .......... .......... .......... 276 GAGAGTTAAT TTGTGTGTAA TCAGATGACA GAGTATTATC AATTAACTGG GTCAAGTCTG 120513 .......... .......... .......... .......... .......... .......... 276 AAGTGACAGC TGGTTTTACC TATCAGTAAG GCAGTAACAA TAATCAGGTT TGGAAGCTTT 120453 .......... .......... .......... .......... .......... .......... 276 AAATTCTTTT CTTGAACTCC TTTTTGATTG CGCTTTTATG TCAAAGATTC TGGTTTGCTA 120393 .......... .......... .......... .......... .......... .......... 276 GGTGTTCCGC TGATGATGTA TGCATATGAA GTTCTCTTCA AGGGCATAAA AAGAACATAT 120333 .......... .......... .......... .......... .......... .......... 276 AAGATCTTTG GCTATTTTGA AATGTGATTT GCTCCACGTC TATGGCAATT CATTTCCTAA 120273 .......... .......... .......... .......... .......... .......... 276 TTTTATTTTT CTTTGTTATT GTTGTTGGGG TTTTTTTTAA AATAGAAATA TAATAATATG 120213 .......... .......... .......... .......... .......... .......... 276 CGACAAAACT ATTTAGCAGG GCAAAAGAAA AGAAAAACAA TGCACAGTAA TGTAATTTTA 120153 .......... .......... .......... .......... .......... .......... 276 GTTGGATCAG ATAACAAAGT ATCTAAAATG TAAGAGCGAC TTGTATTGAG CGATAGATTG 120093 .......... .......... .......... .......... .......... .......... 276 GTCGACAATG AAATGGACAA CAAAACCAAA ACTGTTTCGT AATTACATGT TTGCTGGACG 120033 .......... .......... .......... .......... .......... .......... 276 TTATCTGAGA AGCCCGTGGA TTCTCTCTAC AAGTACCATC ACATTATAGT ATTCAACATA 119973 .......... .......... .......... .......... .......... .......... 276 AAATCACATT ATTCCTGTCA CCACTAATCC TATTTTATCA GGGGATCGGT AGCTATCAAA 119913 .......... .......... .......... .......... .......... .......... 276 ATTCAAAGAA GTCCTTTTTT TTTGTTAGCG GATTTCTCAT TAAGTTCTTG TTTGACTTGT 119853 .......... .......... .......... .......... .......... .......... 276 CGCTAGTTGA ACCCCCTGAT ATTCATCTGT TTGAAGTTAT TATTTTCACT AATGAATTCA 119793 .......... .......... .......... .......... .......... .......... 276 TCTTTGTTTC TTTCTTAATA AAGTAAATAC AGATTACGTA AGCAATTAAT AGACCCTTTA 119733 .......... .......... .......... .......... .......... .......... 276 CTATAACCAG CCCGATGAAA ATATTTGAGA GGAAGTATCC CTGAAAGTAA CCATGACCAT 119673 .......... .......... .......... .......... .......... .......... 276 CTGTGCTTGG TCTATTTTCG ACTTTTCATG CCACCCAACA TTTTTGTGCT TCTTTCCACT 119613 .......... .......... .......... .......... .......... .......... 276 TGTGATAATA TAGTTCATTT TGGAAGGTTG ATCGATGCAT TCAATGTAAG CACCCACTAA 119553 .......... .......... .......... .......... .......... .......... 276 AATTATCAGG TCAGTATTGT CTAAGGCGAA AAACATAGAA AACTGCCAAG TGTTTGCTGG 119493 .......... .......... .......... .......... .......... .......... 276 TGTTTTAGCT TTTAACTAAA GATAGAAGCA TGAGCTTTAG TGTAGTAAGA CTTCGACGAG 119433 .......... .......... .......... .......... .......... .......... 276 AAAAAGTAAC TTAATATATA AAGAACAGTT ATATTGGGCA AATAAGTGAA AAACTACGAT 119373 .......... .......... .......... .......... .......... .......... 276 TACATAGAAT ATATAAAGTA GTCATATCAA CAAGTTCAAA TCTATTACAT AGAATATTTA 119313 .......... .......... .......... .......... .......... .......... 276 GGGACTAGCT TGTCATATTG CATAGAATAG TTAAGGAGTA AGGACTACTT GTCATATTGC 119253 .......... .......... .......... .......... .......... .......... 276 AACTTTGACC TACAATTTTG GATTGAAAAT TCTGATAGGG GGAACCGGTT GTGGGTGTCG 119193 .......... .......... .......... .......... .......... .......... 276 CTAGATAATT TCATTTCCAT GTTGTTACGA AACAATATAT TTAGTTGGTG TATGTTCATT 119133 .......... .......... .......... .......... .......... .......... 276 TCATGTCATA ATAACCTGCG AAACTAATTA CCTTTTAAAC TTGCTCTACA CTCCTATCCA 119073 .......... .......... .......... .......... .......... .......... 276 AAAGAAGGAA AGATCCTAAT ATATTCTCTA ATTGGGATCT TATATTTTCA CTTATTGATT 119013 .......... .......... .......... .......... .......... .......... 276 GGTTAATGTT TTCAGGGGGC CCCAAACCTC CTCCACGTCA TGAATTTAAG AGTAACAAAT 118953 .......... .......... .......... .......... .......... .......... 276 TTAAATATCT ATTAATGAAT CCCAAATTAT TTGGTATCAA CTATATGAAT CCTCTTTGTT 118893 .......... .......... .......... .......... .......... .......... 276 CGTTCAAGTC TATTCTGGCT TATTTTTTAA TTTCATTTTA AAGATAAGTT GGAGGTTTTC 118833 .......... .......... .......... .......... .......... .......... 276 TTACAACAAC ATACCTAGTG AAATCCCACT ATCTCGTGGA AGTGAGACCG TAACAATTAA 118773 .......... .......... .......... .......... .......... .......... 276 ACCTTAATTG CAGTATTTGT ATCTTTTGAG TCCATAGTGT TCTGTTTTCA GCAAGGTTGC 118713 .......... .......... .......... .......... .......... .......... 276 ATGCATTGTA AGAAAGTTTA AGCCTTTTGA GAAAATTATT CTCAATGTGA TTTTTGGTCC 118653 .......... .......... .......... .......... .......... .......... 276 GTCAACTCCT TTTTGAGGAG TAGAAGTGTC AAGGAAGGCT TCTTAATAGT TACAAATGGA 118593 .......... .......... .......... .......... .......... .......... 276 GGTGTTATAT TATAAGGACT GTATTTTGAA ATCTCATTTT TATTTGGGTA GGATTATGCT 118533 .......... .......... .......... .......... .......... .......... 276 GCTATTTTGC TATAGGTATT TGAAAAAAAT TATTTCTCCA CAGGATGACA TACGCAGGGA 118473 ||||||| |||||||||| .......... .......... .......... .......... ...GATGACA TACGCAGGGA 293 AGCTCAAACT ATGAGTTTGA TAGACCATCC TAATGTAATA AAGTCATTCT GTTCATTTGT 118413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCAAACT ATGAGTTTGA TAGACCATCC TAATGTAATA AAGTCATTCT GTTCATTTGT 353 TGTTGAGAAC TACCTATGGG TGGTAATGCC CTTCATGGCT GAGGGCTCTT GTCTACATCT 118353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAGAAC TACCTATGGG TGGTAATGCC CTTCATGGCT GAGGGCTCTT GTCTACATCT 413 CATGAAAATA GCATATCCAG ATGGATTCGA AGAATCTGCT ATTTGTTCTA TGTTGAAGGA 118293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAAAATA GCATATCCAG ATGGATTCGA AGAATCTGCT ATTTGTTCTA TGTTGAAGGA 473 AACTCTCAAG GCGTTGGAAT ATCTCCATCG ACATGGGCAC ATACATCGAG ATGTGAAGGT 118233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AACTCTCAAG GCGTTGGAAT ATCTCCATCG ACATGGGCAC ATACATCGAG ATGTGAAG.. 531 TTGTTAAAAC CGATGTTCCC TTGTTTTTGA CCCTCAAATT CTGATATTTG TGGTTTCTCT 118173 .......... .......... .......... .......... .......... .......... 531 ACCACTTTTC TCATCCCAGG CTGGGAATAT ATTACTGGAC ACTAATGGGG CAGTAAAGCT 118113 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CTGGGAATAT ATTACTGGAC ACTAATGGGG CAGTAAAGCT 572 GGGCGA-TTT TGGTGTTTCC GCATGCATGT TTGACAGTGG TGATAGACAG CGGTCTAGGA 118054 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCGATTTT TGGTGTTTCC GCATGCATGT TTGACAGTGG TGATAGACAG CGGTCTAGGA 632 ATACCTTTGT AGGAACTCCG TGCTGGTGAG CATATAGGCA TCCTTTCAGT CACTTCCTAT 117994 |||||||||| |||||||||| ||||| ATACCTTTGT AGGAACTCCG TGCTG..... .......... .......... .......... 657 CTATAATTGT TTCTATGCAA GTTTTTTCGT GCTCTACATG TCTATCAAGG CATGAACTAC 117934 .......... .......... .......... .......... .......... .......... 657 TTTTATTTTG TAGGATGGCA CCAGAAGTTC TGCAGCCTGG AACTGGATAT GATTTTAAGT 117874 ||||||| |||||||||| |||||||||| |||||||||| |||||||| .......... ...GATGGCA CCAGAAGTTC TGCAGCCTGG AACTGGATAT GATTTTAA.. 702 GAGTTTTCTC TGTCACGGTG TAAGATCTTG ATGGTTTCAT ATGTTATGAT GTACATTTTT 117814 .......... .......... .......... .......... .......... .......... 702 CATTTAATGG TTGACTGAGA GCTATTTGAG AAAGCTGAAG GCTGAATTCT TTTTGAAATT 117754 .......... .......... .......... .......... .......... .......... 702 GTACCATTGA ATTACTTTAC TGAACTTTTA GTGCTGAAAG GTATTAAGTT TATGCATTTT 117694 .......... .......... .......... .......... .......... .......... 702 AATCCTGTCA CTGAATTCAA ATATGAATTA TCCTCTTTAG TATTTTTTTG AAATTAAAAC 117634 .......... .......... .......... .......... .......... .......... 702 TGAGTGTATT AATTTATCAC TAGATAATGC TAGCTTCTTG GACTTAATCA GGTTGTAATG 117574 .......... .......... .......... .......... .......... .......... 702 ATGAAGCTTA TATCATTCAT GATATAACAT ATTCCAAGCA TTTTGTTCAT GTAATAAGCA 117514 .......... .......... .......... .......... .......... .......... 702 ACTACGGTTG ATTAGAAACT TGTTCTCGGA TATGTGGTCT TTCAAACTTT AGTGATAACT 117454 .......... .......... .......... .......... .......... .......... 702 AAATTTTGGT TTACTTGAAA TTGGTAAAGC AATTTAAGTG GCGCATGGAG TATTACATGA 117394 .......... .......... .......... .......... .......... .......... 702 TTTTGAGTTT TTGTATAAAT AAGTCTTATT TTTTAATGAC TTAATCTGGT AATTTTAAGT 117334 .......... .......... .......... .......... .......... .......... 702 GCTTAAAACA GTTATCAAAC ACACTTTTAG ATGAGATTCT GAATATTGAC ATAAAGGTCT 117274 .......... .......... .......... .......... .......... .......... 702 ACATTTTCTT CTTGTCTAAG TATAATGCTT GTGTACTTAT GCAGGGTCTA TGAGAGTATT 117214 .......... .......... .......... .......... .......... .......... 702 TAGATTATCA ATGCTATTGA CTCTAATTTT CTTCCTTCTA CAGGGCTGAC ATTTGGTCAT 117154 ||||||| ||| |||||| .......... .......... .......... .......... ...GGCTGAC ATTNGGTCAT 719 TTGGAATAAC TGCCCTGGAA TTGGCTCATG GTCATG 117118 |||||||||| |||||||||| |||||||||| |||||| TTGGAATAAC TGCCCTGGAA TTGGCTCATG GTCATG 755 hqPGS_C08SLm0006K11.1-_SGN-E335423+ (121587 121317,118489 118235,118153 118029,117920 117876,117170 117118) ******************************************************************************** EST sequence 25 -strand 379 n (File: SGN-E373918-) 1 AAATGACGAG TCTACTTGTT GCTGCTCGGA GTGTGAAGGT GAAGAAGACG ATTCGGACGA 61 CACCGATACG GCGGAGGGAG TTGGGTGGGC AGTAGATGTA GGGATATGGG TGATGTGCCT 121 TGGGGTGGGG GTGGGCTATT TGGTCTCTAG AGCTTCTTCA AAGAGCTTAA GGAGGAGGAG 181 GAGATTCCTA TAAAAAAACT CATTGTTTTG GTTAAATAAT CCTGCGTAGA CATTTTTTCC 241 ACCACTTATA CCTTATAATT TTATTATTCT GCTAGTAATT TCTAACAAAT AGGATATAGA 301 AAGTTTTGTT TTCTGCAAAG TATTACATTT AGGCTCGTTT AATCCAAAAA TAAATTATTC 361 TAGAATTGTT AAAAAAAAA Predicted gene structure (within gDNA segment 123419 to 121759): Exon 1 122809 122440 ( 370 n); cDNA 1 370 ( 370 n); score: 1.000 Intron 1 122439 121931 ( 509 n); Pd: 0.000 (s: 1.00), Pa: 0.902 (s: 0) Exon 2 121930 121924 ( 7 n); cDNA 371 377 ( 7 n); score: 0.857 MATCH C08SLm0006K11.1- SGN-E373918- 1.000 377 0.995 C PGS_C08SLm0006K11.1-_SGN-E373918- (122809 122440,121930 121924) Alignment (genomic DNA sequence = upper lines): AAATGACGAG TCTACTTGTT GCTGCTCGGA GTGTGAAGGT GAAGAAGACG ATTCGGACGA 122750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGACGAG TCTACTTGTT GCTGCTCGGA GTGTGAAGGT GAAGAAGACG ATTCGGACGA 60 CACCGATACG GCGGAGGGAG TTGGGTGGGC AGTAGATGTA GGGATATGGG TGATGTGCCT 122690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGATACG GCGGAGGGAG TTGGGTGGGC AGTAGATGTA GGGATATGGG TGATGTGCCT 120 TGGGGTGGGG GTGGGCTATT TGGTCTCTAG AGCTTCTTCA AAGAGCTTAA GGAGGAGGAG 122630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGTGGGG GTGGGCTATT TGGTCTCTAG AGCTTCTTCA AAGAGCTTAA GGAGGAGGAG 180 GAGATTCCTA TAAAAAAACT CATTGTTTTG GTTAAATAAT CCTGCGTAGA CATTTTTTCC 122570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTCCTA TAAAAAAACT CATTGTTTTG GTTAAATAAT CCTGCGTAGA CATTTTTTCC 240 ACCACTTATA CCTTATAATT TTATTATTCT GCTAGTAATT TCTAACAAAT AGGATATAGA 122510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACTTATA CCTTATAATT TTATTATTCT GCTAGTAATT TCTAACAAAT AGGATATAGA 300 AAGTTTTGTT TTCTGCAAAG TATTACATTT AGGCTCGTTT AATCCAAAAA TAAATTATTC 122450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTTGTT TTCTGCAAAG TATTACATTT AGGCTCGTTT AATCCAAAAA TAAATTATTC 360 TAGAATTGTT ACTTCATCTT GTTTTTATTA CTTTGCAATT TTCGAATCAA TTGTTCCACC 122390 |||||||||| TAGAATTGTT .......... .......... .......... .......... .......... 370 ATTTAGTAGT TTAAATAAAT ACTACTGTCA TAAAGAGATG AAAACACACT TTTGATCGTG 122330 .......... .......... .......... .......... .......... .......... 370 AGGAATGCTT GTAAGCTCAC GAGTAATGTG GTGGGAGATG ATGCAATTCA ATTTTGGTAA 122270 .......... .......... .......... .......... .......... .......... 370 TTGTCACGCT TCCCTCTTTC ACTGTCTTTA ATTCGATAAA AATATTGGAT TTAAAAAATT 122210 .......... .......... .......... .......... .......... .......... 370 CTGTTTGACA CCCTAATTTC ATTATTTCTT ACTTTATATT TATAACAATC CTTTTTCCTG 122150 .......... .......... .......... .......... .......... .......... 370 ATTTAAACAA GTAAATTTCT AAGTTTATAC GAATAGACGA CTATTTTTTA AAAAAATCCA 122090 .......... .......... .......... .......... .......... .......... 370 AGATTAATCT CCTGTCTTTC TCATTTAACA CACCAACTTA ATCAATCTTA CGTTTATTAT 122030 .......... .......... .......... .......... .......... .......... 370 TACGATTATA AGTGATAAAT CTGGATAGTG AACAAGGACT AATTCACAAT TGCACAAGTA 121970 .......... .......... .......... .......... .......... .......... 370 ATTTGAATTC TCATTATTTT TTTTCTATTT GTTTGCTAGA AATAAA 121924 | || ||| .......... .......... .......... .........A AAAAAA 377 hqPGS_C08SLm0006K11.1-_SGN-E373918- (122809 122440) ******************************************************************************** EST sequence 104 +strand 683 n (File: SGN-E373919+) 1 TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 61 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 121 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 181 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 241 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 301 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 361 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 421 GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 481 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 541 CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAT 601 GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 661 TGGGTGATGT GCCTTGGGGG TGG Predicted gene structure (within gDNA segment 123963 to 122035): Exon 1 123363 122681 ( 683 n); cDNA 1 683 ( 683 n); score: 0.996 MATCH C08SLm0006K11.1- SGN-E373919+ 0.996 683 1.000 C PGS_C08SLm0006K11.1-_SGN-E373919+ (123363 122681) Alignment (genomic DNA sequence = upper lines): TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 123304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 60 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 123244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 120 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 123184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 180 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 123124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 240 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 123064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 300 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 123004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 360 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 122944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 420 GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 122884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 480 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 122824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 540 CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAA 122764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAT 600 GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 122704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 660 TGGGTGATGT GCCTTGGGGT GGG 122681 |||||||||| ||||||||| || TGGGTGATGT GCCTTGGGGG TGG 683 hqPGS_C08SLm0006K11.1-_SGN-E373919+ (123363 122681) ******************************************************************************** EST sequence 121 +strand 569 n (File: SGN-E300567+) 1 TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 61 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 121 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 181 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 241 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 301 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 361 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 421 GTGTGTGTGG CGGTGGAAGG ACGCACCGAC GCGCCGCCGG AAGTGATTAC TGAGAAAGTG 481 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 541 CAAAGAGAAG TTGAAAATGA CGAGTCTAC Predicted gene structure (within gDNA segment 123963 to 122185): Exon 1 123363 122795 ( 569 n); cDNA 1 569 ( 569 n); score: 0.996 MATCH C08SLm0006K11.1- SGN-E300567+ 0.996 569 1.000 C PGS_C08SLm0006K11.1-_SGN-E300567+ (123363 122795) Alignment (genomic DNA sequence = upper lines): TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 123304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 60 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 123244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 120 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 123184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 180 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 123124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 240 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 123064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 300 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 123004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 360 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 122944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 420 GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 122884 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| GTGTGTGTGG CGGTGGAAGG ACGCACCGAC GCGCCGCCGG AAGTGATTAC TGAGAAAGTG 480 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 122824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 540 CAAAGAGAAG TTGAAAATGA CGAGTCTAC 122795 |||||||||| |||||||||| ||||||||| CAAAGAGAAG TTGAAAATGA CGAGTCTAC 569 hqPGS_C08SLm0006K11.1-_SGN-E300567+ (123363 122795) ******************************************************************************** EST sequence 133 +strand 483 n (File: SGN-E250014+) 1 AAAAATGTGT AAAGGATTTC AACCAAACGA GAGAGATCGC CTGAAAATCA AAGGCTGTTA 61 TCTCCATTTA TCACCGACTG AAACCGTCTC ACCGGATTCT CTAACTCTGC ATTATCTCCC 121 TAGAATTAGT GAGAGTCCAT TAGAGATTAA TGATTCCAAA ATCCGATCCA ATTCCCCCGG 181 TTTCGTTACG CTTTACCGGG TAGTATCAGC TGACAATGTA ACAACGAAAG GTGTTATTTA 241 CGGAAGCAGG GACAGAGTTA AAGCCAGTGA AGGAGTAAAA TTTGAAATAT TCATGGCTGA 301 TGTAAAGCTC ATAAAAGGTA TTTTCATGAA AGATCTACAC AACTGGAGAA TCGATTGCAA 361 GTGCGCTTTG TTGGAAAACG ACGATTTAAA AGTGAAAGGA GCATACGTGT GTGTGGCGGT 421 GGAAGGACGC ACCGCCGCGC CGCCGGAAGT GATTACTGAG AATGTGGAGA TGACGGTGAG 481 ATC Predicted gene structure (within gDNA segment 123949 to 122257): Exon 1 123349 122867 ( 483 n); cDNA 1 483 ( 483 n); score: 0.990 MATCH C08SLm0006K11.1- SGN-E250014+ 0.990 483 1.000 C PGS_C08SLm0006K11.1-_SGN-E250014+ (123349 122867) Alignment (genomic DNA sequence = upper lines): AAAAATGTGT AAAGGATTTC AACCAAACGA GAAAGATCGC CTGAAAATCA AAGGCTTTTA 123290 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||| ||| AAAAATGTGT AAAGGATTTC AACCAAACGA GAGAGATCGC CTGAAAATCA AAGGCTGTTA 60 TCTCCATTTA TCACCGACTG AAACCGTCTC ACCGGATTCT CTAACTCTGC ATTATCTCCC 123230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCATTTA TCACCGACTG AAACCGTCTC ACCGGATTCT CTAACTCTGC ATTATCTCCC 120 TAGAATTAGT GAGAGTCCAT TAGAGATTAA TGATTCCAAA ATCCGATCCA ATTCCCCCGG 123170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAATTAGT GAGAGTCCAT TAGAGATTAA TGATTCCAAA ATCCGATCCA ATTCCCCCGG 180 TTTCGTTACG CTTTACCGGG TAGTATCAGC TGACAATGTA ACAACGAAAG GTGTTATTTA 123110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGTTACG CTTTACCGGG TAGTATCAGC TGACAATGTA ACAACGAAAG GTGTTATTTA 240 CGGAAGCAGG GACAGAGTTA AAGCCAGTGA AGGAGTAAAA TTTGAAATAT TCATGGCTGA 123050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGCAGG GACAGAGTTA AAGCCAGTGA AGGAGTAAAA TTTGAAATAT TCATGGCTGA 300 TGTAAAGCTC ATAAAAGGTA TTTTCATGAA AGATCTACAC AACTGGAGAA TCGATTGCAA 122990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAAAGCTC ATAAAAGGTA TTTTCATGAA AGATCTACAC AACTGGAGAA TCGATTGCAA 360 GTGCGCTTTG TTGGAAAACG ACGATTTAAA AGTGAAAGGA GCAGAGGTGT GTGTGGCGGT 122930 |||||||||| |||||||||| |||||||||| |||||||||| ||| | |||| |||||||||| GTGCGCTTTG TTGGAAAACG ACGATTTAAA AGTGAAAGGA GCATACGTGT GTGTGGCGGT 420 GGAAGGACGC ACCGCCGCGC CGCCGGAAGT GATTACTGAG AAGGTGGAGA TGACGGTGAG 122870 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGAAGGACGC ACCGCCGCGC CGCCGGAAGT GATTACTGAG AATGTGGAGA TGACGGTGAG 480 ATC 122867 ||| ATC 483 hqPGS_C08SLm0006K11.1-_SGN-E250014+ (123349 122867) ******************************************************************************** EST sequence 97 +strand 411 n (File: SGN-E262552+) 1 TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 61 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 121 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 181 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 241 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 301 ATATTCATGG CTGATGNTAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 361 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAATGAA A Predicted gene structure (within gDNA segment 123963 to 122289): Exon 1 123363 122953 ( 411 n); cDNA 1 411 ( 411 n); score: 0.993 MATCH C08SLm0006K11.1- SGN-E262552+ 0.993 411 1.000 C PGS_C08SLm0006K11.1-_SGN-E262552+ (123363 122953) Alignment (genomic DNA sequence = upper lines): TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 123304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 60 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 123244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 120 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 123184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 180 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 123124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 240 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 123064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 300 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 123004 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATATTCATGG CTGATGNTAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 360 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA A 122953 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| | AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAATGAA A 411 hqPGS_C08SLm0006K11.1-_SGN-E262552+ (123363 122953) Total number of EST alignments reported: 142 ________________________________________________________________________________ Predicted gene locations (17) in segment 1 to 129852: PGL 1 (+ strand): 947 3972 AGS-1 (947 1002,1037 1304,1395 1609) SCR (e 1.000 d 0.587 a 0.983,e 0.996 d 0.945 a 0.999,e 0.995) Exon 1 947 1002 ( 56 n); score: 1.000 Intron 1 1003 1036 ( 34 n); Pd: 0.587 Pa: 0.983 Exon 2 1037 1304 ( 268 n); score: 0.996 Intron 2 1305 1394 ( 90 n); Pd: 0.945 Pa: 0.999 Exon 3 1395 1609 ( 215 n); score: 0.995 PGS (947 1009) SGN-E577904+ PGS (992 1002,1037 1304,1395 1609) SGN-E328609+ 3-phase translation of AGS-1 (+strand): . . . . . . : 947 TCCTTTTGCTGTGTTATGTCATGAATTTCATATTGTACTTCCAGAGTCTGATGAGG : GCTG S F C C V M S - I S Y C T S R V - - G : L P F A V L C H E F H I V L P E S D E : G C L L L C Y V M N F I L Y F Q S L M R : A . . . . . . 1041 TCTTTCTGCACTTTCCAATGCAAAGGAGGAGGCTACAAAACTTGGTACCGTTATAGGAAT S F C T F Q C K G G G Y K T W Y R Y R N L S A L S N A K E E A T K L G T V I G I V F L H F P M Q R R R L Q N L V P L - E . . . . . . 1101 TGATCTTGGGACAACCTATTCCTGTGTTGGGGTGTACAAGAATGGTCATGTGGAGATTAT - S W D N L F L C W G V Q E W S C G D Y D L G T T Y S C V G V Y K N G H V E I I L I L G Q P I P V L G C T R M V M W R L . . . . . . 1161 AGCTAATGACCAAGGAAACAGGATTACACCATCATGGGTTGCATTCACTGATAACGAGAG S - - P R K Q D Y T I M G C I H - - R E A N D Q G N R I T P S W V A F T D N E R - L M T K E T G L H H H G L H S L I T R . . . . . . 1221 ATTGATTGGTGAGGCTGCCAAGAACCTGGCTGCGGTCAACCCAGAAAGAACAATCTTTGA I D W - G C Q E P G C G Q P R K N N L - L I G E A A K N L A A V N P E R T I F D D - L V R L P R T W L R S T Q K E Q S L . . . : . . . 1281 TGTTAAGAGGCTGATTGGAAGAAA : ATTTGAAGATAAGGAAGTACAGAGGGATATGAAGCT C - E A D W K K : I - R - G S T E G Y E A V K R L I G R K : F E D K E V Q R D M K L M L R G - L E E : N L K I R K Y R G I - S . . . . . . 1431 GGTACCGTACAAGATTGTCAGCAAGGATGGAAAGCCCTACATACAAGTCAAAATCAAGGA G T V Q D C Q Q G W K A L H T S Q N Q G V P Y K I V S K D G K P Y I Q V K I K D W Y R T R L S A R M E S P T Y K S K S R . . . . . . 1491 TGGAGAAGTTAAGGTATTTAGTCCTGAGGAAATCAGCGCCATGATTTTGACAAAGATGAA W R S - G I - S - G N Q R H D F D K D E G E V K V F S P E E I S A M I L T K M K M E K L R Y L V L R K S A P - F - Q R - . . . . . . 1551 AGAGACAGCCGAAGCATTCCTTGGGAAGACTATTAAGGATGCTGTGGTCACTGTTCCTG R D S R S I P W E D Y - G C C G H C S E T A E A F L G K T I K D A V V T V P K R Q P K H S L G R L L R M L W S L F L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-1_AGS-1_PPS_1 (948 1002,1037 1304,1395 1608) (frame '2'; 537 bp, 179 residues) 1 PFAVLCHEFH IVLPESDEGC LSALSNAKEE ATKLGTVIGI DLGTTYSCVG VYKNGHVEII 61 ANDQGNRITP SWVAFTDNER LIGEAAKNLA AVNPERTIFD VKRLIGRKFE DKEVQRDMKL 121 VPYKIVSKDG KPYIQVKIKD GEVKVFSPEE ISAMILTKMK ETAEAFLGKT IKDAVVTVP AGS-2 (1796 1941,2220 2699,2805 2959,3076 3158,3241 3972) SCR (e 1.000 d 0.988 a 0.996,e 1.000 d 1.000 a 0.999,e 1.000 d 0.996 a 0.994,e 1.000 d 1.000 a 0.994,e 0.996) Exon 1 1796 1941 ( 146 n); score: 1.000 Intron 1 1942 2219 ( 278 n); Pd: 0.988 Pa: 0.996 Exon 2 2220 2699 ( 480 n); score: 1.000 Intron 2 2700 2804 ( 105 n); Pd: 1.000 Pa: 0.999 Exon 3 2805 2959 ( 155 n); score: 1.000 Intron 3 2960 3075 ( 116 n); Pd: 0.996 Pa: 0.994 Exon 4 3076 3158 ( 83 n); score: 1.000 Intron 4 3159 3240 ( 82 n); Pd: 1.000 Pa: 0.994 Exon 5 3241 3972 ( 732 n); score: 0.996 PGS (1796 1941,2220 2531) SGN-E310011+ PGS (2225 2699,2805 2846) SGN-E268352+ PGS (2326 2699,2805 2959,3076 3158,3241 3296) SGN-E327301+ PGS (2542 2699,2805 2888) SGN-E316692+ PGS (2553 2699,2805 2959,3076 3158,3241 3708) SGN-E554366+ PGS (2567 2699,2805 2959,3076 3158,3241 3364) SGN-E287221+ PGS (2637 2699,2805 2959,3076 3158,3241 3365) SGN-E322961+ PGS (2655 2699,2805 2959,3076 3158,3241 3598) SGN-E326986+ PGS (3076 3158,3241 3735) SGN-E329946+ PGS (3288 3689) SGN-E330198+ PGS (3476 3972) SGN-E296369- PGS (3476 3972) SGN-E296509- PGS (3477 3894) SGN-E267455+ 3-phase translation of AGS-2 (+strand): . . . . . . 1796 CATTGCCTACGGACTGGATAAGAAAGGTGGTGAGAAGAACATTCTTGTCTTTGACCTTGG H C L R T G - E R W - E E H S C L - P W I A Y G L D K K G G E K N I L V F D L G L P T D W I R K V V R R T F L S L T L . . . . . . 1856 TGGTGGGACATTCGATGTCAGTATTCTGACCATTGACAATGGTGTATTTGAGGTTCTTGC W W D I R C Q Y S D H - Q W C I - G S C G G T F D V S I L T I D N G V F E V L A V V G H S M S V F - P L T M V Y L R F L . . . : . . . 1916 AACAAATGGTGACACCCATCTTGGAG : GTGAGGACTTTGATCAAAGGATTATGGAATACTT N K W - H P S W R : - G L - S K D Y G I L T N G D T H L G : G E D F D Q R I M E Y F Q Q M V T P I L E : V R T L I K G L W N T . . . . . . 2254 CATCAAGTTGATCAAGAAGAAGCATGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGG H Q V D Q E E A W K G H Q Q G Q Q S S W I K L I K K K H G K D I S K D N R A L G S S S - S R R S M E R T S A R T T E L L . . . . . . 2314 AAAGCTAAGGAGAGAAGCTGAGCGTGCCAAGAGATCCCTTAGTAGCCAGCACCAAGTCCG K A K E R S - A C Q E I P - - P A P S P K L R R E A E R A K R S L S S Q H Q V R E S - G E K L S V P R D P L V A S T K S . . . . . . 2374 GGTTGAGATTGAATCATTATTTGATGGTACTGATTTCTCTGAACCACTGACCCGTGCTCG G - D - I I I - W Y - F L - T T D P C S V E I E S L F D G T D F S E P L T R A R G L R L N H Y L M V L I S L N H - P V L . . . . . . 2434 CTTTGAGGAGTTGAACAATGATCTCTTCAGAAAGACAATGGGACCTGTGAAGAAGGCAAT L - G V E Q - S L Q K D N G T C E E G N F E E L N N D L F R K T M G P V K K A M A L R S - T M I S S E R Q W D L - R R Q . . . . . . 2494 GGATGATGCTGGCCTACAAAAGAACCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCAC G - C W P T K E P D - - D C S C W W K H D D A G L Q K N Q I D E I V L V G G S T W M M L A Y K R T R L M R L F L L V E A . . . . . . 2554 CAGAATTCCTAAGGTGCAACAGCTCCTCAAAGACTATTTTGACGGGAAGGAGCCCAGCAA Q N S - G A T A P Q R L F - R E G A Q Q R I P K V Q Q L L K D Y F D G K E P S K P E F L R C N S S S K T I L T G R S P A . . . . . . 2614 GGGTGTAAATCCTGATGAAGCAGTTGCTTATGGTGCTGCTGTTCAAGGTGGTATCCTCAG G C K S - - S S C L W C C C S R W Y P Q G V N P D E A V A Y G A A V Q G G I L S R V - I L M K Q L L M V L L F K V V S S . . . : . . . 2674 TGGTGAGGGTGGAGATGAAACTAAAG : ATATCCTTCTCCTGGATGTCGCTCCTCTCACCCT W - G W R - N - R : Y P S P G C R S S H P G E G G D E T K : D I L L L D V A P L T L V V R V E M K L K : I S F S W M S L L S P . . . . . . 2839 TGGTATTGAAACCGTTGGTGGTGTGATGACCAAATTGATCCCCAGAAATACCGTTATCCC W Y - N R W W C D D Q I D P Q K Y R Y P G I E T V G G V M T K L I P R N T V I P L V L K P L V V - - P N - S P E I P L S . . . . . . 2899 AACCAAGAAGTCCCAGGTCTTCACCACTTACCAAGACCAGCAGACCACTGTCTCCATTCA N Q E V P G L H H L P R P A D H C L H S T K K S Q V F T T Y Q D Q Q T T V S I Q Q P R S P R S S P L T K T S R P L S P F . : . . . . . 2959 G : GTTTTTGAAGGTGAAAGGAGTCTTACCAAGGACTGTAGGAATCTCGGGAAGTTTGATCT : G F - R - K E S Y Q G L - E S R E V - S : V F E G E R S L T K D C R N L G K F D L R : F L K V K G V L P R T V G I S G S L I . . . : . . . 3135 TACAGGAATTCCTCCAGCTCCAAG : GGGAACCCCCCAAATTGAGGTCACATTCGAAGTTGA Y R N S S S S K : G N P P N - G H I R S - T G I P P A P R : G T P Q I E V T F E V D L Q E F L Q L Q : G E P P K L R S H S K L . . . . . . 3277 TGCCAATGGTATCTTGAATGTCAAAGCAGAAGACAAGGGTACTGGAAAAGCAGAGAAGAT C Q W Y L E C Q S R R Q G Y W K S R E D A N G I L N V K A E D K G T G K A E K I M P M V S - M S K Q K T R V L E K Q R R . . . . . . 3337 TACCATTACAAACGACAAGGGCCGCTTAAGCCAAGAAGAGATTGAGCGTATGGTTCGTGA Y H Y K R Q G P L K P R R D - A Y G S - T I T N D K G R L S Q E E I E R M V R E L P L Q T T R A A - A K K R L S V W F V . . . . . . 3397 AGCAGAAGAGTTTGCTGAGGAAGACAAGAAAGTGAAGGAGAAGATTGATGCCCGTAACGC S R R V C - G R Q E S E G E D - C P - R A E E F A E E D K K V K E K I D A R N A K Q K S L L R K T R K - R R R L M P V T . . . . . . 3457 TTTGGAAACCTACGTGTACAACATGAAGAATCAAATCAACGACAAGGACAAATTAGCTGA F G N L R V Q H E E S N Q R Q G Q I S - L E T Y V Y N M K N Q I N D K D K L A D L W K P T C T T - R I K S T T R T N - L . . . . . . 3517 CAAACTCGAGTCTGATGAGAAGGAGAAGATTGAGACAGCAACGAAAGAAGCCCTTGAATG Q T R V - - E G E D - D S N E R S P - M K L E S D E K E K I E T A T K E A L E W T N S S L M R R R R L R Q Q R K K P L N . . . . . . 3577 GTTAGACGATAACCAGAGCGCCGAGAAAGAGGACTATGACGAGAAGCTCAAAGAGGTCGA V R R - P E R R E R G L - R E A Q R G R L D D N Q S A E K E D Y D E K L K E V E G - T I T R A P R K R T M T R S S K R S . . . . . . 3637 GGCAGTTTGCAACCCAATCATCACAGCTGTTTATCAACGATCAGGTGGAGCCCCAGGTGG G S L Q P N H H S C L S T I R W S P R W A V C N P I I T A V Y Q R S G G A P G G R Q F A T Q S S Q L F I N D Q V E P Q V . . . . . . 3697 CGGTGCATCGGAAGAAGAAGATGACAGCCATGATGAGCTGTAAGCTGTTCCAAAGAATCT R C I G R R R - Q P - - A V S C S K E S G A S E E E D D S H D E L - A V P K N L A V H R K K K M T A M M S C K L F Q R I . . . . . . 3757 CCATTGATACTGCAAAGATGCAGGAAATGAGGATATATAGAGTAGTTTGAAGTGAGGGTT P L I L Q R C R K - G Y I E - F E V R V H - Y C K D A G N E D I - S S L K - G L S I D T A K M Q E M R I Y R V V - S E G . . . . . . 3817 AGTGCAAGTTTTGTCATTCGTTCTGAAAAATCTCTCCCCCCTTCGCTTAGTTTTTTTTAG S A S F V I R S E K S L P P S L S F F - V Q V L S F V L K N L S P L R L V F F R - C K F C H S F - K I S P P F A - F F L . . . . . . 3877 GTGAAGATTTTACTAAAGGATGTTTCCGTTCTTTGAGAACGACGGCTTGTATGTTGCTTC V K I L L K D V S V L - E R R L V C C F - R F Y - R M F P F F E N D G L Y V A S G E D F T K G C F R S L R T T A C M L L . . . . 3937 GATCTGTTGAATACAACTTCAGAATTTTATTTAGTT D L L N T T S E F Y L V I C - I Q L Q N F I - R S V E Y N F R I L F S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-1_AGS-2_PPS_1 (1797 1941,2220 2699,2805 2959,3076 3158,3241 3739) (frame '2'; 1359 bp, 453 residues) 1 IAYGLDKKGG EKNILVFDLG GGTFDVSILT IDNGVFEVLA TNGDTHLGGE DFDQRIMEYF 61 IKLIKKKHGK DISKDNRALG KLRREAERAK RSLSSQHQVR VEIESLFDGT DFSEPLTRAR 121 FEELNNDLFR KTMGPVKKAM DDAGLQKNQI DEIVLVGGST RIPKVQQLLK DYFDGKEPSK 181 GVNPDEAVAY GAAVQGGILS GEGGDETKDI LLLDVAPLTL GIETVGGVMT KLIPRNTVIP 241 TKKSQVFTTY QDQQTTVSIQ VFEGERSLTK DCRNLGKFDL TGIPPAPRGT PQIEVTFEVD 301 ANGILNVKAE DKGTGKAEKI TITNDKGRLS QEEIERMVRE AEEFAEEDKK VKEKIDARNA 361 LETYVYNMKN QINDKDKLAD KLESDEKEKI ETATKEALEW LDDNQSAEKE DYDEKLKEVE 421 AVCNPIITAV YQRSGGAPGG GASEEEDDSH DEL- PGL 2 (+ strand): 21012 29250 AGS-1 (21012 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29250) SCR (e 1.000 d 0.856 a 0.920,e 1.000 d 0.519 a 0.997,e 0.993 d 0.965 a 0.996,e 1.000 d 0.999 a 0.987,e 1.000 d 0.870 a 0.993,e 1.000 d 0.969 a 0.991,e 1.000 d 0.957 a 0.995,e 1.000 d 1.000 a 0.987,e 0.984 d 0.999 a 0.997,e 1.000 d 0.999 a 1.000,e 1.000 d 0.978 a 0.979,e 1.000 d 0.833 a 0.916,e 1.000 d 0.999 a 0.993,e 1.000 d 0.999 a 0.996,e 1.000 d 0.995 a 0.962,e 1.000 d 0.999 a 0.785,e 1.000 d 0.995 a 0.977,e 0.992) Exon 1 21012 21358 ( 347 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 Pa: 0.920 Exon 2 22373 22591 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 Pa: 0.997 Exon 3 22987 23179 ( 193 n); score: 0.993 Intron 3 23180 24277 (1098 n); Pd: 0.965 Pa: 0.996 Exon 4 24278 24486 ( 209 n); score: 1.000 Intron 4 24487 24612 ( 126 n); Pd: 0.999 Pa: 0.987 Exon 5 24613 24768 ( 156 n); score: 1.000 Intron 5 24769 25571 ( 803 n); Pd: 0.870 Pa: 0.993 Exon 6 25572 25700 ( 129 n); score: 1.000 Intron 6 25701 25807 ( 107 n); Pd: 0.969 Pa: 0.991 Exon 7 25808 25909 ( 102 n); score: 1.000 Intron 7 25910 26007 ( 98 n); Pd: 0.957 Pa: 0.995 Exon 8 26008 26154 ( 147 n); score: 1.000 Intron 8 26155 26319 ( 165 n); Pd: 1.000 Pa: 0.987 Exon 9 26320 26382 ( 63 n); score: 0.984 Intron 9 26383 26504 ( 122 n); Pd: 0.999 Pa: 0.997 Exon 10 26505 26551 ( 47 n); score: 1.000 Intron 10 26552 26716 ( 165 n); Pd: 0.999 Pa: 1.000 Exon 11 26717 26776 ( 60 n); score: 1.000 Intron 11 26777 26876 ( 100 n); Pd: 0.978 Pa: 0.979 Exon 12 26877 26959 ( 83 n); score: 1.000 Intron 12 26960 27217 ( 258 n); Pd: 0.833 Pa: 0.916 Exon 13 27218 27312 ( 95 n); score: 1.000 Intron 13 27313 27635 ( 323 n); Pd: 0.999 Pa: 0.993 Exon 14 27636 27722 ( 87 n); score: 1.000 Intron 14 27723 27951 ( 229 n); Pd: 0.999 Pa: 0.996 Exon 15 27952 28039 ( 88 n); score: 1.000 Intron 15 28040 28321 ( 282 n); Pd: 0.995 Pa: 0.962 Exon 16 28322 28407 ( 86 n); score: 1.000 Intron 16 28408 28703 ( 296 n); Pd: 0.999 Pa: 0.785 Exon 17 28704 28766 ( 63 n); score: 1.000 Intron 17 28767 28866 ( 100 n); Pd: 0.995 Pa: 0.977 Exon 18 28867 29250 ( 384 n); score: 0.992 PGS (21012 21358,22373 22591,22987 23165) SGN-E334225+ PGS (21029 21358,22373 22591,22987 23135) SGN-E328851+ PGS (21029 21358,22373 22591,22987 23120) SGN-E328214+ PGS (21029 21358,22373 22591,22987 23062) SGN-E317338+ PGS (21036 21358,22373 22591,22987 23179) SGN-E315868+ PGS (21039 21358,22373 22502) SGN-E320214+ PGS (21251 21358,22373 22591,22987 23167) SGN-E214776+ PGS (23019 23179,24278 24486,24613 24768) SGN-E203785+ PGS (23026 23179,24278 24486,24613 24768,25572 25700,25808 25856) SGN-E372510+ PGS (23026 23179,24278 24486,24613 24768) SGN-E294168+ PGS (24358 24486,24613 24768,25572 25700,25808 25909,26008 26055) SGN-E298025+ PGS (24402 24486,24613 24768,25572 25700,25808 25845) SGN-E301396+ PGS (25632 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26949) SGN-E298042+ PGS (26878 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29187) SGN-E545737+ PGS (26886 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 28920) SGN-E312499+ PGS (26918 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29250) SGN-E549256- PGS (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) SGN-E551023+ PGS (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) SGN-E551051+ PGS (27636 27722,27952 28039,28322 28407,28704 28766,28867 29057) SGN-E551052+ PGS (27636 27722,27952 28039,28322 28333) SGN-E258311+ PGS (27981 28039,28322 28407,28704 28766,28867 29137) SGN-E551987+ PGS (28328 28407,28704 28766,28867 29172) SGN-E221741- PGS (28328 28407,28704 28766,28867 29118) SGN-E216379- PGS (28336 28407,28704 28766,28867 29137) SGN-E307646+ 3-phase translation of AGS-1 (+strand): . . . . . . 21012 TTGGCCCTGCTTTGAGGTTTCGCCAGGATTCTCTCACAGAGCCGCCTCACACTGTACCCG L A L L - G F A R I L S Q S R L T L Y P W P C F E V S P G F S H R A A S H C T R G P A L R F R Q D S L T E P P H T V P . . . . . . 21072 CAACCCGGTCCACAACCCATTTTCCCTTTCATTCCGGTTCATCTTCTCCATCACCGGCAG Q P G P Q P I F P F I P V H L L H H R Q N P V H N P F S L S F R F I F S I T G R A T R S T T H F P F H S G S S S P S P A . . . . . . 21132 AAGGCGGAAAGTGGAGAACGAAGATGACTGAAGTCGCGAGCAACGTTGTACACGAAATCC K A E S G E R R - L K S R A T L Y T K S R R K V E N E D D - S R E Q R C T R N P E G G K W R T K M T E V A S N V V H E I . . . . . . 21192 TAGGCGGACGAGCTCAAGATGTAGATCAGCCTATTATCGACTATATTATCAATGTCGTCG - A D E L K M - I S L L S T I L S M S S R R T S S R C R S A Y Y R L Y Y Q C R R L G G R A Q D V D Q P I I D Y I I N V V . . . . . . 21252 CCGATGAAGATTTCGATTTTGGTCACGACGGTGAAGGTGCTTTTGAAGCCCTTGGAGAGC P M K I S I L V T T V K V L L K P L E S R - R F R F W S R R - R C F - S P W R A A D E D F D F G H D G E G A F E A L G E . . . . . : . 21312 TACTTGTCGATTCCGGTTGTGTTACTGACTTCTCCGAATGTCGTGCG : GTTTGTAGCAAGT Y L S I P V V L L T S P N V V R : F V A S T C R F R L C Y - L L R M S C : G L - Q V L L V D S G C V T D F S E C R A : V C S K . . . . . . 22386 TGTCTGAGAAGTTAGAGAAGCATGAATTGGCTAAACCCCAACCGACGGTGAGAAGCTTAA C L R S - R S M N W L N P N R R - E A - V - E V R E A - I G - T P T D G E K L K L S E K L E K H E L A K P Q P T V R S L . . . . . . 22446 AAATGCCGCTGAGAATGTTTGATGGAATGGATGAAGAGGAAGCTCCAAAGAATAAAAAGC K C R - E C L M E W M K R K L Q R I K S N A A E N V - W N G - R G S S K E - K A K M P L R M F D G M D E E E A P K N K K . . . . . . 22506 CAGAACCAGTTGATGGTCCTTTGCTCACAGAACGTGACAAGATTAAGATTGAAAGAAGGA Q N Q L M V L C S Q N V T R L R L K E G R T S - W S F A H R T - Q D - D - K K E P E P V D G P L L T E R D K I K I E R R . . . : . . . 22566 AGAGGAAAGAGGAACGCCTGAGAGAG : GCAGAATACCAAGAACACTTGAAAGAAGTGGAGG R G K R N A - E R : Q N T K N T - K K W R E E R G T P E R : G R I P R T L E R S G G K R K E E R L R E : A E Y Q E H L K E V E . . . . . . 23021 AAGTGAAAGCTGGTATGCCTTTAGTGTGTGTGAATCATGATGGTCAGGGTGATGGACCAA K - K L V C L - C V - I M M V R V M D Q S E S W Y A F S V C E S - W S G - W T N E V K A G M P L V C V N H D G Q G D G P . . . . . . 23081 CTGTTAAGGATATCCGTATGGAGAACTTCAATATATCTGTCGGTGGTCGTGAACTTATTG L L R I S V W R T S I Y L S V V V N L L C - G Y P Y G E L Q Y I C R W S - T Y C T V K D I R M E N F N I S V G G R E L I . . . . : . . 23141 TCGATGGTTCTGTCACGCTTTCTTTTGGAAGACACTACG : GTCTTATTGGAAGAAACGGTA S M V L S R F L L E D T T : V L L E E T V R W F C H A F F W K T L R : S Y W K K R Y V D G S V T L S F G R H Y : G L I G R N G . . . . . . 24299 CAGGGAAAACAACTCTCCTGAGGCATATGGCTATGCACGCTATTGATGGTATTCCCAGGA Q G K Q L S - G I W L C T L L M V F P G R E N N S P E A Y G Y A R Y - W Y S Q E T G K T T L L R H M A M H A I D G I P R . . . . . . 24359 ACTGCCAGATATTGCATGTTGAGCAAGAAGTGGTTGGTGATAATACCTCAGTTTTGCAAT T A R Y C M L S K K W L V I I P Q F C N L P D I A C - A R S G W - - Y L S F A M N C Q I L H V E Q E V V G D N T S V L Q . . . . . . 24419 GTATTCTTAACACTGATATGGAGAGAACCCAACTTCTGGAAGAAGAGGCTCGTCTGCTTG V F L T L I W R E P N F W K K R L V C L Y S - H - Y G E N P T S G R R G S S A - C I L N T D M E R T Q L L E E E A R L L . : . . . . . 24479 AATTACAG : AGAGTGACCGACTTAGAAGGCGAATCTGCAAAGAGTGATAAGTTGAATGGAG N Y R : E - P T - K A N L Q R V I S - M E I T : E S D R L R R R I C K E - - V E W R E L Q : R V T D L E G E S A K S D K L N G . . . . . . 24665 GTATCGACAAAAATTCGCAAGCAAAAAGGCTTGAAGAGATATACAAAAGACTTGATTTCA V S T K I R K Q K G L K R Y T K D L I S Y R Q K F A S K K A - R D I Q K T - F H G I D K N S Q A K R L E E I Y K R L D F . . . . . : . 24725 TTGATGCTTACTCGGCTGAGTCACGTGCAGCAACTATACTATCG : GGTTTGAGCTTCTCTC L M L T R L S H V Q Q L Y Y R : V - A S L - C L L G - V T C S N Y T I : G F E L L S I D A Y S A E S R A A T I L S : G L S F S . . . . . . 25588 CAGAAATGCAAAAGAGAGCAACCAAAACATTTTCTGGAGGATGGAGAATGAGAATCGCTC Q K C K R E Q P K H F L E D G E - E S L R N A K E S N Q N I F W R M E N E N R S P E M Q K R A T K T F S G G W R M R I A . . . . . . : 25648 TTGCTCGGGCATTGTTCATTGAACCTGATCTATTGTTGCTTGATGAACCCACG : AATCATC L L G H C S L N L I Y C C L M N P R : I I C S G I V H - T - S I V A - - T H : E S S L A R A L F I E P D L L L L D E P T : N H . . . . . . 25815 TTGATCTGCATGCTGTCTTATGGCTGGAAAGTTACCTGGTGAAGTGGCCGAAGACATTTA L I C M L S Y G W K V T W - S G R R H L - S A C C L M A G K L P G E V A E D I Y L D L H A V L W L E S Y L V K W P K T F . . . . : . . 25875 TAGTTGTGTCTCATGCTAGAGAGTTCTTGAATTCT : GTAGTCACAGATATCATCCATCTAC - L C L M L E S S - I L : - S Q I S S I Y S C V S C - R V L E F : C S H R Y H P S T I V V S H A R E F L N S : V V T D I I H L . . . . . . 26033 AAAATCAGAAATTGAGCACCTTTAAAGGAGACTATGATACATTTGAAAGGACACGAGAAG K I R N - A P L K E T M I H L K G H E K K S E I E H L - R R L - Y I - K D T R R Q N Q K L S T F K G D Y D T F E R T R E . . . . . . 26093 AACAAGTTAAGAATCAACAGAAAGCATTCGAGGCAAATGAACGTACAAGGGCCCACATGC N K L R I N R K H S R Q M N V Q G P T C T S - E S T E S I R G K - T Y K G P H A E Q V K N Q Q K A F E A N E R T R A H M . : . . . . . 26153 AG : ACCTTTATTGACAAGTTCAGGTACAATGCAAAGCGTGCATCTCTTGTTCAGTCTAGAA R : P L L T S S G T M Q S V H L L F S L E : D L Y - Q V Q V Q C K A C I S C S V - N Q : T F I D K F R Y N A K R A S L V Q S R . : . . . . . : 26378 TTAAG : GCACTGGAACGAATTGGTCGTGTGGATGAAGTCATCAATGATCCTGA : CTACAAGT L R : H W N E L V V W M K S S M I L : T T S - : G T G T N W S C G - S H Q - S - : L Q V I K : A L E R I G R V D E V I N D P D : Y K . . . . . . : 26725 TTGAGTTCCCTTCTCCTGATGATAGACCTGGCGCTCCTATTATAAGCTTCAG : TGACGCAT L S S L L L M I D L A L L L - A S : V T H - V P F S - - - T W R S Y Y K L Q : - R I F E F P S P D D R P G A P I I S F S : D A . . . . . . 26885 CCTTTGGATATCCTGGGGGACCAATATTGTTCAAAAATTTGAATTTTGGAATAGATTTGG P L D I L G D Q Y C S K I - I L E - I W L W I S W G T N I V Q K F E F W N R F G S F G Y P G G P I L F K N L N F G I D L . . : . . . . 26945 ATAGCAGAGTAGCAA : TGGTTGGTCCTAATGGTATTGGAAAGTCAACAATACTTAAGCTTA I A E - Q : W L V L M V L E S Q Q Y L S L - Q S S N : G W S - W Y W K V N N T - A Y D S R V A : M V G P N G I G K S T I L K L . . . . . : . 27263 TTTCTGGGGAGCTTCAACCAACCTCAGGGACTGTTTTCCGCTCTGCTAAG : GTCCGTATTG F L G S F N Q P Q G L F S A L L R : S V L F W G A S T N L R D C F P L C - : G P Y C I S G E L Q P T S G T V F R S A K : V R I . . . . . . 27646 CTGTATTTAGTCAGCATCATGTTGATGGGCTGGATCTGTCCTCAAATCCCCTCTTATACA L Y L V S I M L M G W I C P Q I P S Y T C I - S A S C - W A G S V L K S P L I H A V F S Q H H V D G L D L S S N P L L Y . . : . . . . 27706 TGATGCGTTGCTTTCCA : GGAGTGCCTGAACAAAAATTACGTGGTCATCTAGGTTCATTTG - C V A F Q : E C L N K N Y V V I - V H L D A L L S : R S A - T K I T W S S R F I W M M R C F P : G V P E Q K L R G H L G S F . . . . . : . 27995 GTATAACCGGAAATCTTGCTCTTCAGCCCATGTACACTTTATCTG : GTGGCCAAAAAAGCA V - P E I L L F S P C T L Y L : V A K K A Y N R K S C S S A H V H F I W : W P K K Q G I T G N L A L Q P M Y T L S : G G Q K S . . . . . . 28337 GAGTTGCATTTGCAAAGATAACTTTCAAGAAACCTCACATATTGCTTCTTGATGAGCCGT E L H L Q R - L S R N L T Y C F L M S R S C I C K D N F Q E T S H I A S - - A V R V A F A K I T F K K P H I L L L D E P . . : . . . . 28397 CAAATCACTTG : GATCTGGACGCTGTGGAAGCCTTGATACAAGGTCTTGTCTTGTTCCAAG Q I T W : I W T L W K P - Y K V L S C S K K S L : G S G R C G S L D T R S C L V P R S N H L : D L D A V E A L I Q G L V L F Q . . : . . . . 28753 GAGGCGTCCTGATG : GTCAGTCACGATGAACATTTAATATCTGGCAGTGTTGATCAACTCT E A S - W : S V T M N I - Y L A V L I N S R R P D : G Q S R - T F N I W Q C - S T L G G V L M : V S H D E H L I S G S V D Q L . . . . . . 28913 GGGCTGTCTCTGAGGGCAGAGTGACGCCTTTTGACGGGACATTCCAAGATTACAAGAAAA G L S L R A E - R L L T G H S K I T R K G C L - G Q S D A F - R D I P R L Q E N W A V S E G R V T P F D G T F Q D Y K K . . . . . . 28973 TATTGCAATCATAAACACTTCTGCTGCTTTCTGAAGTGAACGAACTATAATTAGTTACTT Y C N H K H F C C F L K - T N Y N - L L I A I I N T S A A F - S E R T I I S Y L I L Q S - T L L L L S E V N E L - L V T . . . . . . 29033 ATGGCCTAAACCCCTACTTTTATGCAGAGACCACATGTTCGATGTAAAATTTCGAAACCA M A - T P T F M Q R P H V R C K I S K P W P K P L L L C R D H M F D V K F R N Q Y G L N P Y F Y A E T T C S M - N F E T . . . . . . 29093 AATTCTGAAGAATGTTCTAAAACAAATAGTGATTTTCTACTCCTACTTGCTTCTATTTAC N S E E C S K T N S D F L L L L A S I Y I L K N V L K Q I V I F Y S Y L L L F T K F - R M F - N K - - F S T P T C F Y L . . . . . . 29153 ACTGTCCAAATTGGACAAAACATTTTCTCGATTTGATGAACTTTATTTCATCAATTTTAT T V Q I G Q N I F S I - - T L F H Q F Y L S K L D K T F S R F D E L Y F I N F I H C P N W T K H F L D L M N F I S S I L . . . . 29213 ATTAACAAATCAATGAAATAAAAGTGTTATTACGACAA I N K S M K - K C Y Y D L T N Q - N K S V I T T Y - Q I N E I K V L L R Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-2_AGS-1_PPS_1 (21014 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 28986) (frame '0'; 2289 bp, 763 residues) 1 GPALRFRQDS LTEPPHTVPA TRSTTHFPFH SGSSSPSPAE GGKWRTKMTE VASNVVHEIL 61 GGRAQDVDQP IIDYIINVVA DEDFDFGHDG EGAFEALGEL LVDSGCVTDF SECRAVCSKL 121 SEKLEKHELA KPQPTVRSLK MPLRMFDGMD EEEAPKNKKP EPVDGPLLTE RDKIKIERRK 181 RKEERLREAE YQEHLKEVEE VKAGMPLVCV NHDGQGDGPT VKDIRMENFN ISVGGRELIV 241 DGSVTLSFGR HYGLIGRNGT GKTTLLRHMA MHAIDGIPRN CQILHVEQEV VGDNTSVLQC 301 ILNTDMERTQ LLEEEARLLE LQRVTDLEGE SAKSDKLNGG IDKNSQAKRL EEIYKRLDFI 361 DAYSAESRAA TILSGLSFSP EMQKRATKTF SGGWRMRIAL ARALFIEPDL LLLDEPTNHL 421 DLHAVLWLES YLVKWPKTFI VVSHAREFLN SVVTDIIHLQ NQKLSTFKGD YDTFERTREE 481 QVKNQQKAFE ANERTRAHMQ TFIDKFRYNA KRASLVQSRI KALERIGRVD EVINDPDYKF 541 EFPSPDDRPG APIISFSDAS FGYPGGPILF KNLNFGIDLD SRVAMVGPNG IGKSTILKLI 601 SGELQPTSGT VFRSAKVRIA VFSQHHVDGL DLSSNPLLYM MRCFPGVPEQ KLRGHLGSFG 661 ITGNLALQPM YTLSGGQKSR VAFAKITFKK PHILLLDEPS NHLDLDAVEA LIQGLVLFQG 721 GVLMVSHDEH LISGSVDQLW AVSEGRVTPF DGTFQDYKKI LQS- >C08SLm0006K11.1+_PGL-2_AGS-1_PPS_2 (29007 29228) (frame '2'; 219 bp, 73 residues) 1 SERTIISYLW PKPLLLCRDH MFDVKFRNQI LKNVLKQIVI FYSYLLLFTL SKLDKTFSRF 61 DELYFINFIL TNQ- PGL 3 (+ strand): 44883 47862 AGS-1 (44883 45376,45453 45579) SCR (e 1.000 d 1.000 a 0.995,e 1.000) Exon 1 44883 45376 ( 494 n); score: 1.000 Intron 1 45377 45452 ( 76 n); Pd: 1.000 Pa: 0.995 Exon 2 45453 45579 ( 127 n); score: 1.000 PGS (44883 45376,45453 45579) SGN-E206171+ PGS (44884 45280) SGN-E206709+ PGS (44884 45256) SGN-E206214+ 3-phase translation of AGS-1 (+strand): . . . . . . 44883 CACAACCTCCATAACTATTTTCTCTCTATCAGTTTCTCTGTATACTGCTTCTTCTCTTTT H N L H N Y F L S I S F S V Y C F F S F T T S I T I F S L S V S L Y T A S S L F Q P P - L F S L Y Q F L C I L L L L F . . . . . . 44943 TAGAGTAGAAAAATCGCAGGCCTAGAGTTGTACTAGTTTCGCCTTTTTGTGTTCTGAATC - S R K I A G L E L Y - F R L F V F - I R V E K S Q A - S C T S F A F L C S E S L E - K N R R P R V V L V S P F C V L N . . . . . . 45003 ACTGTAAAGTGTGTGAGGTTTCGGCTATCGCATCAACAACAGTCAATAGCAACTACTTTC T V K C V R F R L S H Q Q Q S I A T T F L - S V - G F G Y R I N N S Q - Q L L S H C K V C E V S A I A S T T V N S N Y F . . . . . . 45063 TTTTTTTTTTCGTTTTCGGTTTTCCCAATTGTTATGGTGTATGGACCACTAGTACTGCAA F F F S F S V F P I V M V Y G P L V L Q F F F R F R F S Q L L W C M D H - Y C K L F F F V F G F P N C Y G V W T T S T A . . . . . . 45123 AAAGTTGTTTTCTGTGAAAGCAATTTCTGGAAGGAAAATCAAGCATAGTGTGTTTGTTGT K V V F C E S N F W K E N Q A - C V C C K L F S V K A I S G R K I K H S V F V V K S C F L - K Q F L E G K S S I V C L L . . . . . . 45183 ACAGCACTACTGTAGTTACTAGTAAAAAACCACTGTATCACATAGAGAGCGTGAAAAATT T A L L - L L V K N H C I T - R A - K I Q H Y C S Y - - K T T V S H R E R E K L Y S T T V V T S K K P L Y H I E S V K N . . . . . . 45243 AACCAAAAAAATGCTTGAAACGGTGAAGTACTTGCTTGGTTCCGCCGGAGCTAGCGGTTA N Q K N A - N G E V L A W F R R S - R L T K K M L E T V K Y L L G S A G A S G Y - P K K C L K R - S T C L V P P E L A V . . . . . . 45303 CGGTTCAAAATCCACTGCCGAGAACGTCACCGAACAGTCTCCTGATCTTCGGTCGGTCAC R F K I H C R E R H R T V S - S S V G H G S K S T A E N V T E Q S P D L R S V T T V Q N P L P R T S P N S L L I F G R S . . : . . . . 45363 CGCTATTATCACTG : GTGCGACGTCAGGAATTGGAGCGGAGACGGCGAGAGTTCTGGCAAA R Y Y H W : C D V R N W S G D G E S S G K A I I T : G A T S G I G A E T A R V L A K P L L S L : V R R Q E L E R R R R E F W Q . . . . . . 45499 ACGTGGTGTTAAGCTGATTTTACCGGCGCGTAGTGTAAAAGCGGCAGAGGAAACAAAAAC T W C - A D F T G A - C K S G R G N K N R G V K L I L P A R S V K A A E E T K T N V V L S - F Y R R V V - K R Q R K Q K . . . 45559 TCGAATCCTATCTGAAGTGCC S N P I - S A R I L S E V L E S Y L K C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-3_AGS-1_PPS_1 (45208 45376,45453 45577) (frame '2'; 294 bp, 98 residues) 1 KTTVSHRERE KLTKKMLETV KYLLGSAGAS GYGSKSTAEN VTEQSPDLRS VTAIITGATS 61 GIGAETARVL AKRGVKLILP ARSVKAAEET KTRILSEV AGS-2 (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 47862) SCR (e 0.962 d 0.990 a 0.999,e 1.000 d 0.999 a 0.996,e 1.000 d 0.994 a 0.989,e 1.000 d 0.999 a 0.999,e 1.000 d 1.000 a 0.997,e 1.000 d 0.999 a 0.993,e 0.993) Exon 1 45580 45684 ( 105 n); score: 0.962 Intron 1 45685 45794 ( 110 n); Pd: 0.990 Pa: 0.999 Exon 2 45795 45874 ( 80 n); score: 1.000 Intron 2 45875 45982 ( 108 n); Pd: 0.999 Pa: 0.996 Exon 3 45983 46139 ( 157 n); score: 1.000 Intron 3 46140 46780 ( 641 n); Pd: 0.994 Pa: 0.989 Exon 4 46781 46862 ( 82 n); score: 1.000 Intron 4 46863 47055 ( 193 n); Pd: 0.999 Pa: 0.999 Exon 5 47056 47143 ( 88 n); score: 1.000 Intron 5 47144 47377 ( 234 n); Pd: 1.000 Pa: 0.997 Exon 6 47378 47424 ( 47 n); score: 1.000 Intron 6 47425 47582 ( 158 n); Pd: 0.999 Pa: 0.993 Exon 7 47583 47862 ( 280 n); score: 0.993 PGS (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47417) SGN-E247823+ PGS (46117 46139,46781 46862,47056 47143,47378 47424,47583 47862) SGN-E233706+ PGS (46117 46139,46781 46862,47056 47143,47378 47424,47583 47788) SGN-E231704+ 3-phase translation of AGS-2 (+strand): . . . . . . 45580 GGAGGCGGAGATCATCGTTATGGCTCTCGATCTTAGCTCTCTGAGTTCCGTACGGAATTT G G G D H R Y G S R S - L S E F R T E F E A E I I V M A L D L S S L S S V R N F R R R S S L W L S I L A L - V P Y G I . . . . . : . 45640 CGTCGCTGAATTTGAATATCTGAATTTTCCTCTCAATCTTCTCAT : AAACAACGCCGGAAA R R - I - I S E F S S Q S S H : K Q R R K V A E F E Y L N F P L N L L I : N N A G K S S L N L N I - I F L S I F S : - T T P E . . . . . . 45810 ATTCGCTCACCAGCATGCCATTTCTGAGGATGGAATTGAGATGACATTTGCTACTAATCA I R S P A C H F - G W N - D D I C Y - S F A H Q H A I S E D G I E M T F A T N H N S L T S M P F L R M E L R - H L L L I . : . . . . . 45870 CTTAG : GCCATTTCCTTTTAACAAAGCTTTTACTGAAGAAGATGATCGAGACGGCTAATGA L R : P F P F N K A F T E E D D R D G - - L : G H F L L T K L L L K K M I E T A N E T - : A I S F - Q S F Y - R R - S R R L M . . . . . . 46038 AACGGGCGTTCAAGGAAGAATAGTGAATGTATCCTCAAGCATCCATGGCTGGTTTTCCGG N G R S R K N S E C I L K H P W L V F R T G V Q G R I V N V S S S I H G W F S G K R A F K E E - - M Y P Q A S M A G F P . . . . . : . 46098 CGACTCGATTCAGTACCTCCGACTGATCACTAAAGACAAAAG : TCAATACGATGCGACACG R L D S V P P T D H - R Q K : S I R C D T D S I Q Y L R L I T K D K S : Q Y D A T R A T R F S T S D - S L K T K : V N T M R H . . . . . . 46799 TGCATATGCTCTCTCGAAGCTGGCTAATGTTTTGCACACCAAGGAGCTGGCTCGGGTATT C I C S L E A G - C F A H Q G A G S G I A Y A L S K L A N V L H T K E L A R V L V H M L S R S W L M F C T P R S W L G Y . : . . . . . 46859 GAAA : AAAACGGGGGCAAATGTGACAGTCAATTGTGTTCATCCTGGAATTGTAAGAACTAG E : K N G G K C D S Q L C S S W N C K N - K : K T G A N V T V N C V H P G I V R T R - K : K R G Q M - Q S I V F I L E L - E L . . . . : . . 47112 ACTCACTAGAGAACGAGAAGGCCTCGTCACTG : ATCTGGTATTCTTTTTGACCTCAAAACT T H - R T R R P R H - : S G I L F D L K T L T R E R E G L V T : D L V F F L T S K L D S L E N E K A S S L : I W Y S F - P Q N . . : . . . . 47406 CTTGAAGACTATTCCACAG : GCAGCTGCAACAACTTGCTATGTTGCTACTCACCCAAGACT L E D Y S T : G S C N N L L C C Y S P K T L K T I P Q : A A A T T C Y V A T H P R L S - R L F H R : Q L Q Q L A M L L L T Q D . . . . . . 47624 TGCAAATGTGAGTGGAAAATATTTTGCAGACTGTAATGAAGTTTGTTCTTCAAAGTTGGG C K C E W K I F C R L - - S L F F K V G A N V S G K Y F A D C N E V C S S K L G L Q M - V E N I L Q T V M K F V L Q S W . . . . . . 47684 TTCCAATTCAACAGAAGCAGCACGCATATGGTCAGCTTCAGAGATCATGGTTGCAAAAAA F Q F N R S S T H M V S F R D H G C K K S N S T E A A R I W S A S E I M V A K N V P I Q Q K Q H A Y G Q L Q R S W L Q K . . . . . . 47744 TTCAAATGCAAATTTAGATCCATTGGAGGCCAGCTTACTCTGACGCTCAAAGCGACTCGT F K C K F R S I G G Q L T L T L K A T R S N A N L D P L E A S L L - R S K R L V I Q M Q I - I H W R P A Y S D A Q S D S . . . . . . 47804 TCCTTGGCTGCGGAGGATTTAAAACAGGCTATAAACAGAAAATAGTTAGTTCTTATATG S L A A E D L K Q A I N R K - L V L I P W L R R I - N R L - T E N S - F L Y F L G C G G F K T G Y K Q K I V S S Y M Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-3_AGS-2_PPS_1 (45581 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 47786) (frame '2'; 759 bp, 253 residues) 1 EAEIIVMALD LSSLSSVRNF VAEFEYLNFP LNLLINNAGK FAHQHAISED GIEMTFATNH 61 LGHFLLTKLL LKKMIETANE TGVQGRIVNV SSSIHGWFSG DSIQYLRLIT KDKSQYDATR 121 AYALSKLANV LHTKELARVL KKTGANVTVN CVHPGIVRTR LTREREGLVT DLVFFLTSKL 181 LKTIPQAAAT TCYVATHPRL ANVSGKYFAD CNEVCSSKLG SNSTEAARIW SASEIMVAKN 241 SNANLDPLEA SLL- PGL 4 (+ strand): 54083 55370 AGS-1 (54083 54512,54608 54765) SCR (e 0.998 d 0.992 a 0.955,e 1.000) Exon 1 54083 54512 ( 430 n); score: 0.998 Intron 1 54513 54607 ( 95 n); Pd: 0.992 Pa: 0.955 Exon 2 54608 54765 ( 158 n); score: 1.000 PGS (54083 54512,54608 54765) SGN-E551400+ PGS (54084 54463) SGN-E272666+ 3-phase translation of AGS-1 (+strand): . . . . . . 54083 AATTGATCTCTTCTTCGCTTCTGGAGTGAATTTGCCTTTTTGGTTTGTACTTGGGTTTGA N - S L L R F W S E F A F L V C T W V - I D L F F A S G V N L P F W F V L G F E L I S S S L L E - I C L F G L Y L G L . . . . . . 54143 ATCATGTTTTTTTTAACTCTGATGCCATTGACTTGTAGAGGTCGAAAGGAGAGCCTCTAC I M F F L T L M P L T C R G R K E S L Y S C F F - L - C H - L V E V E R R A S T N H V F F N S D A I D L - R S K G E P L . . . . . . 54203 GTGGCTTTGAAGATGAAAAGTTTTGCTTCATCGCTTTTAGACGAGGAGAACGGCCAAAGC V A L K M K S F A S S L L D E E N G Q S W L - R - K V L L H R F - T R R T A K A R G F E D E K F C F I A F R R G E R P K . . . . . . 54263 AAGTTCTTCTTCAAGAATACGGAATGCCAATTGTTAATTTGTTTTTAGCTTGTTCCATCA K F F F K N T E C Q L L I C F - L V P S S S S S R I R N A N C - F V F S L F H H Q V L L Q E Y G M P I V N L F L A C S I . . . . . . 54323 TTACCATTGTGAAGTGCAAATTTTCACTTTTTATTTTTATTTTTTATTTTCGCCATCTTC L P L - S A N F H F L F L F F I F A I F Y H C E V Q I F T F Y F Y F L F S P S S I T I V K C K F S L F I F I F Y F R H L . . . . . . 54383 TTAAAGTCTCCATTGAACTAATTTCTTTGTTTTTCAAGCAGAGAGCCTTGGCCATTGGAT L K S P L N - F L C F S S R E P W P L D - S L H - T N F F V F Q A E S L G H W I L K V S I E L I S L F F K Q R A L A I G . . . . . . 54443 AGTATGAAGTTTGAGACATTGAAGGAGCAGCATGCCAGAAGGAATCCAGAGGATTTAGAA S M K F E T L K E Q H A R R N P E D L E V - S L R H - R S S M P E G I Q R I - K - Y E V - D I E G A A C Q K E S R G F R . : . . . . . 54503 ATTGACTATG : AGGACCAATTCATCTCAGAAGATGAGGGTATTGAGGATGAAGTAGATCAT I D Y : E D Q F I S E D E G I E D E V D H L T M : R T N S S Q K M R V L R M K - I M N - L - : G P I H L R R - G Y - G - S R S . . . . . . 54658 GTCACATATGATTCCGATGCTACAGAAACAGATGCTGTTACTGAAAATGATGATTGGGAG V T Y D S D A T E T D A V T E N D D W E S H M I P M L Q K Q M L L L K M M I G R C H I - F R C Y R N R C C Y - K - - L G . . . . . 54718 GAAGAAGGTGAAGAAAGGACCCATGCCGATCTTGGTGGTGGTTGGGGA E E G E E R T H A D L G G G W G K K V K K G P M P I L V V V G G R R - R K D P C R S W W W L G Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-4_AGS-1_PPS_1 (54404 54512,54608 54765) (frame '1'; 267 bp, 89 residues) 1 FLCFSSREPW PLDSMKFETL KEQHARRNPE DLEIDYEDQF ISEDEGIEDE VDHVTYDSDA 61 TETDAVTEND DWEEEGEERT HADLGGGWG >C08SLm0006K11.1+_PGL-4_AGS-1_PPS_2 (54181 54444) (frame '0'; 261 bp, 87 residues) 1 RSKGEPLRGF EDEKFCFIAF RRGERPKQVL LQEYGMPIVN LFLACSIITI VKCKFSLFIF 61 IFYFRHLLKV SIELISLFFK QRALAIG- AGS-2 (54820 55370) SCR (e 0.988) Exon 1 54820 55370 ( 551 n); score: 0.988 PGS (54820 55244) SGN-E225171- PGS (54893 55231) SGN-E225600- PGS (54946 55370) SGN-E235244- PGS (54955 55370) SGN-E234572- 3-phase translation of AGS-2 (+strand): . . . . . . 54820 CGATCAATAAATCAAGAAGGCAGTGAAGGGTCATTTGAACGGATTGTTATTACAAAGAGC R S I N Q E G S E G S F E R I V I T K S D Q - I K K A V K G H L N G L L L Q R A I N K S R R Q - R V I - T D C Y Y K E . . . . . . 54880 AGAAACCCAACATTGCATCATCAGGCGCGAAGATCGCTTTGGGGTGACTTATGGCCCTTC R N P T L H H Q A R R S L W G D L W P F E T Q H C I I R R E D R F G V T Y G P S Q K P N I A S S G A K I A L G - L M A L . . . . . . 54940 TAAATTTTGTTAGAAAAATGGCACTCAAGGTGTTTGGTCCATCAGTAAGAGCGCAGTGTG - I L L E K W H S R C L V H Q - E R S V K F C - K N G T Q G V W S I S K S A V - L N F V R K M A L K V F G P S V R A Q C . . . . . . 55000 ATGTCTGAGTTAGGCACTCATCACAGAGTTCAAATGTCGCAACAAACAAAAGCCTGGTAG M S E L G T H H R V Q M S Q Q T K A W - C L S - A L I T E F K C R N K Q K P G R D V - V R H S S Q S S N V A T N K S L V . . . . . . 55060 GAGGGGCACGTCTATAATCCATCAAGTCTCAAACTATGCTTCACTTGCCCTCAGTTATCA E G H V Y N P S S L K L C F T C P Q L S R G T S I I H Q V S N Y A S L A L S Y Q G G A R L - S I K S Q T M L H L P S V I . . . . . . 55120 AAGAAATTATTTTTGTTAAAAATAGTTTCTTGAGTAATGTAATAAATGTATTTTCGTGTG K K L F L L K I V S - V M - - M Y F R V R N Y F C - K - F L E - C N K C I F V C K E I I F V K N S F L S N V I N V F S C . . . . . . 55180 TACCCATTTTCTGAAAAAGAAGAAAAGTGAAGTCAGATGGTTATTCTGATTATGACAGAG Y P F S E K E E K - S Q M V I L I M T E T H F L K K K K S E V R W L F - L - Q R V P I F - K R R K V K S D G Y S D Y D R . . . . . . 55240 GATAAGATTGGGCCAAATGGCTCAAAAAGTAGAGTTACTGCATACATGTGAACCACATAT D K I G P N G S K S R V T A Y M - T T Y I R L G Q M A Q K V E L L H T C E P H M G - D W A K W L K K - S Y C I H V N H I . . . . . . 55300 GTCTTATTCATAATTCTTGTACGGAATCATGGAACAGTAAAAGAGTTCGAGTCACGTGCC V L F I I L V R N H G T V K E F E S R A S Y S - F L Y G I M E Q - K S S S H V P C L I H N S C T E S W N S K R V R V T C . . 55360 AGCTTAGAAGA S L E A - K Q L R R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 55370 TCTTCTAAGCTGGCACGTGACTCGAACTCTTTTACTGTTCCATGATTCCGTACAAGAATT S S K L A R D S N S F T V P - F R T R I L L S W H V T R T L L L F H D S V Q E L F - A G T - L E L F Y C S M I P Y K N . . . . . . 55310 ATGAATAAGACATATGTGGTTCACATGTATGCAGTAACTCTACTTTTTGAGCCATTTGGC M N K T Y V V H M Y A V T L L F E P F G - I R H M W F T C M Q - L Y F L S H L A Y E - D I C G S H V C S N S T F - A I W . . . . . . 55250 CCAATCTTATCCTCTGTCATAATCAGAATAACCATCTGACTTCACTTTTCTTCTTTTTCA P I L S S V I I R I T I - L H F S S F S Q S Y P L S - S E - P S D F T F L L F Q P N L I L C H N Q N N H L T S L F F F F . . . . . . 55190 GAAAATGGGTACACACGAAAATACATTTATTACATTACTCAAGAAACTATTTTTAACAAA E N G Y T R K Y I Y Y I T Q E T I F N K K M G T H E N T F I T L L K K L F L T K R K W V H T K I H L L H Y S R N Y F - Q . . . . . . 55130 AATAATTTCTTTGATAACTGAGGGCAAGTGAAGCATAGTTTGAGACTTGATGGATTATAG N N F F D N - G Q V K H S L R L D G L - I I S L I T E G K - S I V - D L M D Y R K - F L - - L R A S E A - F E T - W I I . . . . . . 55070 ACGTGCCCCTCCTACCAGGCTTTTGTTTGTTGCGACATTTGAACTCTGTGATGAGTGCCT T C P S Y Q A F V C C D I - T L - - V P R A P P T R L L F V A T F E L C D E C L D V P L L P G F C L L R H L N S V M S A . . . . . . 55010 AACTCAGACATCACACTGCGCTCTTACTGATGGACCAAACACCTTGAGTGCCATTTTTCT N S D I T L R S Y - W T K H L E C H F S T Q T S H C A L T D G P N T L S A I F L - L R H H T A L L L M D Q T P - V P F F . . . . . . 54950 AACAAAATTTAGAAGGGCCATAAGTCACCCCAAAGCGATCTTCGCGCCTGATGATGCAAT N K I - K G H K S P Q S D L R A - - C N T K F R R A I S H P K A I F A P D D A M - Q N L E G P - V T P K R S S R L M M Q . . . . . . 54890 GTTGGGTTTCTGCTCTTTGTAATAACAATCCGTTCAAATGACCCTTCACTGCCTTCTTGA V G F L L F V I T I R S N D P S L P S - L G F C S L - - Q S V Q M T L H C L L D C W V S A L C N N N P F K - P F T A F L . . 54830 TTTATTGATCG F I D L L I I Y - S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-4_AGS-2_PPS_1 (55087 54869) (frame '2'; 216 bp, 72 residues) 1 DLMDYRRAPP TRLLFVATFE LCDECLTQTS HCALTDGPNT LSAIFLTKFR RAISHPKAIF 61 APDDAMLGFC SL- PGL 5 (- strand): 57447 56168 AGS-1 (57447 57221,56970 56168) SCR (e 1.000 d 0.997 a 0.796,e 0.999) Exon 1 57447 57221 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 Pa: 0.796 Exon 2 56970 56168 ( 803 n); score: 0.999 PGS (56859 56168) SGN-E396052- PGS (56587 56175) SGN-E396802- PGS (56805 56177) SGN-E396034- PGS (56797 56215) SGN-E389563- PGS (56916 56229) SGN-E550435- PGS (57447 57221,56970 56477) SGN-E389562+ PGS (57447 57221,56970 56482) SGN-E396035+ PGS (57447 57221,56970 56487) SGN-E550187+ PGS (57447 57221,56970 56553) SGN-E396053+ PGS (57447 57221,56970 56671) SGN-E398601+ PGS (57446 57221,56970 56931) SGN-E231676+ 3-phase translation of AGS-1 (-strand): . . . . . . 57447 AGATCACTACCTTTCTCCTAATTTTTGCATCTTCTTAGTTCTCTCTGTTCTGAAAATTTT R S L P F S - F L H L L S S L C S E N F D H Y L S P N F C I F L V L S V L K I F I T T F L L I F A S S - F S L F - K F . . . . . . 57387 TCTTTAGAAAAAACACACACAAAAAAAAATAAAAATGGGAAGAGCACCATGTTGTGCTAA S L E K T H T K K N K N G K S T M L C - L - K K H T Q K K I K M G R A P C C A K F F R K N T H K K K - K W E E H H V V L . . . . . . 57327 AGAAGGATTGCGTAAAGGGCCATGGTCTACTAAAGAAGATTTATTACTTACTAATTATAT R R I A - R A M V Y - R R F I T Y - L Y E G L R K G P W S T K E D L L L T N Y I K K D C V K G H G L L K K I Y Y L L I I . . . . . : . 57267 CAATCAATATGGTGAAGGCCAATGGAGATCTTTGCCTAAAAATGCTG : GATTGCTTAGGTG Q S I W - R P M E I F A - K C W : I A - V N Q Y G E G Q W R S L P K N A : G L L R C S I N M V K A N G D L C L K M L : D C L G . . . . . . 56957 TGGGAAAAGTTGTAGATTAAGATGGGTGAATTATTTAAAGCCAGGGATTAAAAGAGGAAA W E K L - I K M G E L F K A R D - K R K G K S C R L R W V N Y L K P G I K R G N V G K V V D - D G - I I - S Q G L K E E . . . . . . 56897 TTTTAGTGAAGATGAAGAAGATCTTATAGTGAGATTACATTCACTTCTGGGTAATCGTTG F - - R - R R S Y S E I T F T S G - S L F S E D E E D L I V R L H S L L G N R W I L V K M K K I L - - D Y I H F W V I V . . . . . . 56837 GTCATTAATTGCCGGACGATTACCTGGTCGAACAGATAATGAAATCAAGAATTATTGGAA V I N C R T I T W S N R - - N Q E L L E S L I A G R L P G R T D N E I K N Y W N G H - L P D D Y L V E Q I M K S R I I G . . . . . . 56777 TACGCATTTGACCAAGAAGCTCAGAAGCACAGGAATTGAACCAAAACCCCACAAGAATTT Y A F D Q E A Q K H R N - T K T P Q E F T H L T K K L R S T G I E P K P H K N L I R I - P R S S E A Q E L N Q N P T R I . . . . . . 56717 GACCAAATTAAAGGAGAAATCAAGAAAACAAACCAAAAAGGAGAAATCAAGAAAAGAAGT D Q I K G E I K K T N Q K G E I K K R S T K L K E K S R K Q T K K E K S R K E V - P N - R R N Q E N K P K R R N Q E K K . . . . . . 56657 GGGGAAGAAAAGCAATGATGAGAAGTTGAAGGGTCAAATTGCACAAGTTGAGAAGATAAA G E E K Q - - E V E G S N C T S - E D K G K K S N D E K L K G Q I A Q V E K I K W G R K A M M R S - R V K L H K L R R - . . . . . . 56597 AGTATTTGCACCAAAGCCCATAAGGATTTCTTGTGGGATTTCAAGGAACAATAGTTTTGA S I C T K A H K D F L W D F K E Q - F - V F A P K P I R I S C G I S R N N S F E K Y L H Q S P - G F L V G F Q G T I V L . . . . . . 56537 AAATGATACATTGAGTACTACTACTTGTTCCTCAAATAGTAATTTTGAAAAAGTTGATGA K - Y I E Y Y Y L F L K - - F - K S - - N D T L S T T T C S S N S N F E K V D D K M I H - V L L L V P Q I V I L K K L M . . . . . . 56477 TGGAAAAGACAGGGAAAAAGAGGTGAAGTTATTTCCAAGGGAATTAGATTTTGATGAATT W K R Q G K R G E V I S K G I R F - - I G K D R E K E V K L F P R E L D F D E L M E K T G K K R - S Y F Q G N - I L M N . . . . . . 56417 ACTTGAAGGGGGTGGATTTTATGATGAATTTCTTATGGGAGAAAGCTGCAATTTTTCAAA T - R G W I L - - I S Y G R K L Q F F K L E G G G F Y D E F L M G E S C N F S N Y L K G V D F M M N F L W E K A A I F Q . . . . . . 56357 CAAAGTGGAAATGAATGATAATATGGTGGAAAAAGTATATGAAGAATATCTTCTACTTCT Q S G N E - - Y G G K S I - R I S S T S K V E M N D N M V E K V Y E E Y L L L L T K W K - M I I W W K K Y M K N I F Y F . . . . . . 56297 TTCTGAAATTCAAGAAGATCAAACGGAGCAAAAATTCTCAATGTAAGTTTTAGTTTGGAT F - N S R R S N G A K I L N V S F S L D S E I Q E D Q T E Q K F S M - V L V W I F L K F K K I K R S K N S Q C K F - F G . . . . . . 56237 AGGCTTTTTATAAAGTTTGTTGATCCGACTAATTCAAATTAACGAGTAATGTATATTTGT R L F I K F V D P T N S N - R V M Y I C G F L - S L L I R L I Q I N E - C I F V - A F Y K V C - S D - F K L T S N V Y L . 56177 TTAGTTTCTA L V S - F L F S F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-5_AGS-1_PPS_1 (57380 57221,56970 56252) (frame '2'; 876 bp, 292 residues) 1 KKHTQKKIKM GRAPCCAKEG LRKGPWSTKE DLLLTNYINQ YGEGQWRSLP KNAGLLRCGK 61 SCRLRWVNYL KPGIKRGNFS EDEEDLIVRL HSLLGNRWSL IAGRLPGRTD NEIKNYWNTH 121 LTKKLRSTGI EPKPHKNLTK LKEKSRKQTK KEKSRKEVGK KSNDEKLKGQ IAQVEKIKVF 181 APKPIRISCG ISRNNSFEND TLSTTTCSSN SNFEKVDDGK DREKEVKLFP RELDFDELLE 241 GGGFYDEFLM GESCNFSNKV EMNDNMVEKV YEEYLLLLSE IQEDQTEQKF SM- PGL 6 (- strand): 63008 61263 AGS-1 (63008 62649,61374 61263) SCR (e 0.994 d 0.960 a 0.978,e 1.000) Exon 1 63008 62649 ( 360 n); score: 0.994 Intron 1 62648 61375 (1274 n); Pd: 0.960 Pa: 0.978 Exon 2 61374 61263 ( 112 n); score: 1.000 PGS (62933 62649,61374 61263) SGN-E373416+ PGS (62933 62649,61374 61263) SGN-E287763+ PGS (62924 62649,61374 61263) SGN-E392233+ PGS (62863 62649,61374 61263) SGN-E373415- PGS (62732 62649,61374 61263) SGN-E235581- PGS (62699 62649,61374 61263) SGN-E397854- PGS (61376 61263) SGN-E544787- PGS (63008 62649,61374 61306) SGN-E290294+ 3-phase translation of AGS-1 (-strand): . . . . . . 63008 GATCGAACCCACCGGCTATAGGCTCGTCGTTTCATATTCCTTTGATCAATAATATACTTT D R T H R L - A R R F I F L - S I I Y F I E P T G Y R L V V S Y S F D Q - Y T L S N P P A I G S S F H I P L I N N I L . . . . . . 62948 GAACTTCAATATTTTTCATCTTCAAATCAAATTTGGGCGACGAAAGCTCCATTTTTTTTA E L Q Y F S S S N Q I W A T K A P F F L N F N I F H L Q I K F G R R K L H F F - - T S I F F I F K S N L G D E S S I F F . . . . . . 62888 ACATCTTCCTATACATTGGATCTTACTTTCATTGAATTTTCAAGAATTTATTGTATGGCA T S S Y T L D L T F I E F S R I Y C M A H L P I H W I L L S L N F Q E F I V W Q N I F L Y I G S Y F H - I F K N L L Y G . . . . . . 62828 AATTATTATGTAACGGCGGTTCCGCCGACGGATCTGAATCGGAATACCGAGTGGTTCACG N Y Y V T A V P P T D L N R N T E W F T I I M - R R F R R R I - I G I P S G S R K L L C N G G S A D G S E S E Y R V V H . . . . . . 62768 TATCCCGGTGTATGGACGACCTACATCCTAATTCTATTCTTCTCATGGCTCGTTGTTCTC Y P G V W T T Y I L I L F F S W L V V L I P V Y G R P T S - F Y S S H G S L F S V S R C M D D L H P N S I L L M A R C S . . . . . . : 62708 TCTGTATTTGGTTGCTCTCCTGGCATGGCTTGGACCATCGTCCATCTTTCTCATTTTCTC : S V F G C S P G M A W T I V H L S H F L : L Y L V A L L A W L G P S S I F L I F S : L C I W L L S W H G L D H R P S F S F S : . . . . . . 61374 GTCACATATCAATGTTTTCACTGGAAGAAGGGAACACCATTTGCTGATGATCAAGGTATC V T Y Q C F H W K K G T P F A D D Q G I S H I N V F T G R R E H H L L M I K V S R H I S M F S L E E G N T I C - - S R Y . . . . . . 61314 TACAATAGGTTGACTTGGTGGGAGCAGATAGATAGTGGGAAGCAGCTTACAC Y N R L T W W E Q I D S G K Q L T T I G - L G G S R - I V G S S L H L Q - V D L V G A D R - W E A A Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-6_AGS-1_PPS_1 (62963 62649,61374 61264) (frame '1'; 426 bp, 142 residues) 1 SIIYFELQYF SSSNQIWATK APFFLTSSYT LDLTFIEFSR IYCMANYYVT AVPPTDLNRN 61 TEWFTYPGVW TTYILILFFS WLVVLSVFGC SPGMAWTIVH LSHFLVTYQC FHWKKGTPFA 121 DDQGIYNRLT WWEQIDSGKQ LT AGS-2 (62577 61773) SCR (e 0.987) Exon 1 62577 61773 ( 805 n); score: 0.987 PGS (62577 61773) SGN-E544788+ PGS (62576 62006) SGN-E307904+ 3-phase translation of AGS-2 (-strand): . . . . . . 62577 TTAAACTCGTCAAATTTTGATAAAATTATAATCAAGTTCAGTTTTTTTTTGGTTTAAATG L N S S N F D K I I I K F S F F L V - M - T R Q I L I K L - S S S V F F W F K W K L V K F - - N Y N Q V Q F F F G L N . . . . . . 62517 GGTCTGATTAGAGGAATAGCAGTTTAAATGTTTGGTTGATTGATATTCTTATGATTACAT G L I R G I A V - M F G - L I F L - L H V - L E E - Q F K C L V D - Y S Y D Y M G S D - R N S S L N V W L I D I L M I T . . . . . . 62457 GCCTAGTTCGTTTAGTGTTTCCTGTGTTTTTGGTACTATGGAATTTGGAGACTCAATTTG A - F V - C F L C F W Y Y G I W R L N L P S S F S V S C V F G T M E F G D S I W C L V R L V F P V F L V L W N L E T Q F . . . . . . 62397 GAATTGATTTGAGCTAGGTTCAGCTTTGGGTCATTGATCATTTCCTTATGTTCAATTTGG E L I - A R F S F G S L I I S L C S I W N - F E L G S A L G H - S F P Y V Q F G G I D L S - V Q L W V I D H F L M F N L . . . . . . 62337 AAGTGAGAGATTCTGGGGTTGTAGCTGAAAAAGTGGTGAATTGAAATTCTTTTAGTACTA K - E I L G L - L K K W - I E I L L V L S E R F W G C S - K S G E L K F F - Y - E V R D S G V V A E K V V N - N S F S T . . . . . . 62277 GTCTTGATTCCTAGATATGGTGGAAAATATTACAGCTGAGCTTTACCTTGTGTGATTGAT V L I P R Y G G K Y Y S - A L P C V I D S - F L D M V E N I T A E L Y L V - L I S L D S - I W W K I L Q L S F T L C D - . . . . . . 62217 TGTTGATTTAAGGCCTAGATAGTTGGACATGCCGAATGTATCGAAAGCTATGGCCTTTTT C - F K A - I V G H A E C I E S Y G L F V D L R P R - L D M P N V S K A M A F L L L I - G L D S W T C R M Y R K L W P F . . . . . . 62157 GGTGTCTAATATATTTGGTTTTTCCATTTCAATCAAACTTCACTAGACATTATTGCTGTA G V - Y I W F F H F N Q T S L D I I A V V S N I F G F S I S I K L H - T L L L - W C L I Y L V F P F Q S N F T R H Y C C . . . . . . 62097 GTCTCATATTTGTTGAAGGTATCCTATTAGGATGGAGATTAGCCAAGGTTCCTATATTGG V S Y L L K V S Y - D G D - P R F L Y W S H I C - R Y P I R M E I S Q G S Y I G S L I F V E G I L L G W R L A K V P I L . . . . . . 62037 TCGACATCTCGCGTTATAGTGTCTTTATATTGGTTTCGAGAACTTTTTCCACTTGAACTA S T S R V I V S L Y W F R E L F P L E L R H L A L - C L Y I G F E N F F H L N - V D I S R Y S V F I L V S R T F S T - T . . . . . . 61977 GTTTTTGGAGTTTAGTTGGATTCAAGACCATTTTCATGACAATTATGATGTTTGCTGGAT V F G V - L D S R P F S - Q L - C L L D F L E F S W I Q D H F H D N Y D V C W M S F W S L V G F K T I F M T I M M F A G . . . . . . 61917 GTTCCTTGTTATTTCGTTATTTGATCACTAGCATACAGAGAAACAAGTACATTTGAAACA V P C Y F V I - S L A Y R E T S T F E T F L V I S L F D H - H T E K Q V H L K H C S L L F R Y L I T S I Q R N K Y I - N . . . . . . 61857 TGGGAGATTTTTGCAGATGTGGATGGTTAGTACTTCTATTGAGATTGATAATGTGAAAGC W E I F A D V D G - Y F Y - D - - C E S G R F L Q M W M V S T S I E I D N V K A M G D F C R C G W L V L L L R L I M - K . . . 61797 TTGATTATATCTATTACCTTTTTTT L I I S I T F F - L Y L L P F F L D Y I Y Y L F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-6_AGS-2_PPS_1 (62206 61982) (frame '0'; 222 bp, 74 residues) 1 GLDSWTCRMY RKLWPFWCLI YLVFPFQSNF TRHYCCSLIF VEGILLGWRL AKVPILVDIS 61 RYSVFILVSR TFST- 3-phase translation of AGS-2 (+strand): . . . . . . 61773 AAAAAAAGGTAATAGATATAATCAAGCTTTCACATTATCAATCTCAATAGAAGTACTAAC K K R - - I - S S F H I I N L N R S T N K K G N R Y N Q A F T L S I S I E V L T K K V I D I I K L S H Y Q S Q - K Y - . . . . . . 61833 CATCCACATCTGCAAAAATCTCCCATGTTTCAAATGTACTTGTTTCTCTGTATGCTAGTG H P H L Q K S P M F Q M Y L F L C M L V I H I C K N L P C F K C T C F S V C - - P S T S A K I S H V S N V L V S L Y A S . . . . . . 61893 ATCAAATAACGAAATAACAAGGAACATCCAGCAAACATCATAATTGTCATGAAAATGGTC I K - R N N K E H P A N I I I V M K M V S N N E I T R N I Q Q T S - L S - K W S D Q I T K - Q G T S S K H H N C H E N G . . . . . . 61953 TTGAATCCAACTAAACTCCAAAAACTAGTTCAAGTGGAAAAAGTTCTCGAAACCAATATA L N P T K L Q K L V Q V E K V L E T N I - I Q L N S K N - F K W K K F S K P I - L E S N - T P K T S S S G K S S R N Q Y . . . . . . 62013 AAGACACTATAACGCGAGATGTCGACCAATATAGGAACCTTGGCTAATCTCCATCCTAAT K T L - R E M S T N I G T L A N L H P N R H Y N A R C R P I - E P W L I S I L I K D T I T R D V D Q Y R N L G - S P S - . . . . . . 62073 AGGATACCTTCAACAAATATGAGACTACAGCAATAATGTCTAGTGAAGTTTGATTGAAAT R I P S T N M R L Q Q - C L V K F D - N G Y L Q Q I - D Y S N N V - - S L I E M - D T F N K Y E T T A I M S S E V - L K . . . . . . 62133 GGAAAAACCAAATATATTAGACACCAAAAAGGCCATAGCTTTCGATACATTCGGCATGTC G K T K Y I R H Q K G H S F R Y I R H V E K P N I L D T K K A I A F D T F G M S W K N Q I Y - T P K R P - L S I H S A C . . . . . . 62193 CAACTATCTAGGCCTTAAATCAACAATCAATCACACAAGGTAAAGCTCAGCTGTAATATT Q L S R P - I N N Q S H K V K L S C N I N Y L G L K S T I N H T R - S S A V I F P T I - A L N Q Q S I T Q G K A Q L - Y . . . . . . 62253 TTCCACCATATCTAGGAATCAAGACTAGTACTAAAAGAATTTCAATTCACCACTTTTTCA F H H I - E S R L V L K E F Q F T T F S S T I S R N Q D - Y - K N F N S P L F Q F P P Y L G I K T S T K R I S I H H F F . . . . . . 62313 GCTACAACCCCAGAATCTCTCACTTCCAAATTGAACATAAGGAAATGATCAATGACCCAA A T T P E S L T S K L N I R K - S M T Q L Q P Q N L S L P N - T - G N D Q - P K S Y N P R I S H F Q I E H K E M I N D P . . . . . . 62373 AGCTGAACCTAGCTCAAATCAATTCCAAATTGAGTCTCCAAATTCCATAGTACCAAAAAC S - T - L K S I P N - V S K F H S T K N A E P S S N Q F Q I E S P N S I V P K T K L N L A Q I N S K L S L Q I P - Y Q K . . . . . . 62433 ACAGGAAACACTAAACGAACTAGGCATGTAATCATAAGAATATCAATCAACCAAACATTT T G N T K R T R H V I I R I S I N Q T F Q E T L N E L G M - S - E Y Q S T K H L H R K H - T N - A C N H K N I N Q P N I . . . . . . 62493 AAACTGCTATTCCTCTAATCAGACCCATTTAAACCAAAAAAAAACTGAACTTGATTATAA K L L F L - S D P F K P K K N - T - L - N C Y S S N Q T H L N Q K K T E L D Y N - T A I P L I R P I - T K K K L N L I I . . . 62553 TTTTATCAAAATTTGACGAGTTTAA F Y Q N L T S L F I K I - R V - I L S K F D E F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 80669 81818 AGS-1 (80669 80818,80907 81013,81203 81346,81429 81818) SCR (e 0.987 d 0.912 a 0.988,e 1.000 d 0.998 a 0.851,e 0.993 d 0.977 a 0.849,e 1.000) Exon 1 80669 80818 ( 150 n); score: 0.987 Intron 1 80819 80906 ( 88 n); Pd: 0.912 Pa: 0.988 Exon 2 80907 81013 ( 107 n); score: 1.000 Intron 2 81014 81202 ( 189 n); Pd: 0.998 Pa: 0.851 Exon 3 81203 81346 ( 144 n); score: 0.993 Intron 3 81347 81428 ( 82 n); Pd: 0.977 Pa: 0.849 Exon 4 81429 81818 ( 390 n); score: 1.000 PGS (80669 80818,80907 81013,81203 81346,81429 81818) SGN-E541887- PGS (81230 81346,81429 81817) SGN-E300972- 3-phase translation of AGS-1 (+strand): . . . . . . 80669 TGAACATGGCTCACGAGAGAGTATCAACGATCATCATCGGTGCTTCCTTGTGTGTTATTA - T W L T R E Y Q R S S S V L P C V L L E H G S R E S I N D H H R C F L V C Y Y N M A H E R V S T I I I G A S L C V I . . . . . . 80729 CAAGCATTCTCATATTTCCCATATGGGCTGGTGAAGAGCTCCATAAACTTGTCATTAGTA Q A F S Y F P Y G L V K S S I N L S L V K H S H I S H M G W - R A P - T C H - - T S I L I F P I W A G E E L H K L V I S . . . : . . . 80789 ACTTGGAAAAGCTAGCAGAGTCCTTAGATT : GTTGTGTAGCTGAATTTTTTAGCGACAGTG T W K S - Q S P - I : V V - L N F L A T V L G K A S R V L R L : L C S - I F - R Q - N L E K L A E S L D : C C V A E F F S D S . . . . . . 80937 AAGACACAACAACAAATACTAAAAAAATGCTAGCTTTCAAGTGTGTGTTGAATTCAAAGG K T Q Q Q I L K K C - L S S V C - I Q R R H N N K Y - K N A S F Q V C V E F K G E D T T T N T K K M L A F K C V L N S K . . : . . . . 80997 CCTCTGAAGAGACAATG : GCCAACTTTGCTAGATGGGAGCCTGCTCATGGACTTTTCAACT P L K R Q W : P T L L D G S L L M D F S T L - R D N : G Q L C - M G A C S W T F Q L A S E E T M : A N F A R W E P A H G L F N . . . . . . 81246 TTCAACATCCATGGGGAAAGTACCTTAAGATCAGCGCGTCAATGCGTAGTTGTGCCTGTT F N I H G E S T L R S A R Q C V V V P V S T S M G K V P - D Q R V N A - L C L L F Q H P W G K Y L K I S A S M R S C A C . . . . . : . 81306 GCATTGAGGCACTTACAAGCTGCATCAATCAAAAAGATCAG : GCTTCTGAGTTGTTAAAGA A L R H L Q A A S I K K I R : L L S C - R H - G T Y K L H Q S K R S : G F - V V K E C I E A L T S C I N Q K D Q : A S E L L K . . . . . . 81448 ATGAGCTTACTAACACTTGCCAACAAGTAAGTTCAAGTACAAGTGAGATACTGAAAGAGT M S L L T L A N K - V Q V Q V R Y - K S - A Y - H L P T S K F K Y K - D T E R V N E L T N T C Q Q V S S S T S E I L K E . . . . . . 81508 TAGCTTTAAACATGAAAACAATGAGAAAATCCTCCAGGATGGATATCTTACTACAAGAAA - L - T - K Q - E N P P G W I S Y Y K K S F K H E N N E K I L Q D G Y L T T R K L A L N M K T M R K S S R M D I L L Q E . . . . . . 81568 AGAGTAACGCGATTCAAGAACTAGAAACTCTGATGGAACAACTTTCAGGATTGCTTTTTA R V T R F K N - K L - W N N F Q D C F L E - R D S R T R N S D G T T F R I A F Y K S N A I Q E L E T L M E Q L S G L L F . . . . . . 81628 TACAGCCAAAGAATGATCAAGAAAAGCCAGTTATAAGAACCAGTAGTACTAATGTTATCC Y S Q R M I K K S Q L - E P V V L M L S T A K E - S R K A S Y K N Q - Y - C Y P I Q P K N D Q E K P V I R T S S T N V I . . . . . . 81688 CTCTTGTTGAAATCATACCAACTGCAACATTTGCTTCTTTAGTGATCGAAATTGCCACGA L L L K S Y Q L Q H L L L - - S K L P R S C - N H T N C N I C F F S D R N C H E P L V E I I P T A T F A S L V I E I A T . . . . . . 81748 GGATCGAAGGGGTTGTTGATGGTGTTGAAGAATTATCAAAATTGGCAAAATTCAAACTTG G S K G L L M V L K N Y Q N W Q N S N L D R R G C - W C - R I I K I G K I Q T - R I E G V V D G V E E L S K L A K F K L . . 81808 AGGATGCTGAT R M L G C - E D A D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-7_AGS-1_PPS_1 (80671 80818,80907 81013,81203 81346,81429 81818) (frame '0'; 789 bp, 263 residues) 1 NMAHERVSTI IIGASLCVIT SILIFPIWAG EELHKLVISN LEKLAESLDC CVAEFFSDSE 61 DTTTNTKKML AFKCVLNSKA SEETMANFAR WEPAHGLFNF QHPWGKYLKI SASMRSCACC 121 IEALTSCINQ KDQASELLKN ELTNTCQQVS SSTSEILKEL ALNMKTMRKS SRMDILLQEK 181 SNAIQELETL MEQLSGLLFI QPKNDQEKPV IRTSSTNVIP LVEIIPTATF ASLVIEIATR 241 IEGVVDGVEE LSKLAKFKLE DAD PGL 8 (+ strand): 83296 85353 AGS-1 (83296 83437,84939 85011,85200 85353) SCR (e 1.000 d 0.902 a 0.978,e 1.000 d 0.999 a 0.188,e 1.000) Exon 1 83296 83437 ( 142 n); score: 1.000 Intron 1 83438 84938 (1501 n); Pd: 0.902 Pa: 0.978 Exon 2 84939 85011 ( 73 n); score: 1.000 Intron 2 85012 85199 ( 188 n); Pd: 0.999 Pa: 0.188 Exon 3 85200 85353 ( 154 n); score: 1.000 PGS (83296 83437,84939 85011,85200 85353) SGN-E248937+ PGS (83296 83437,84939 85011,85200 85310) SGN-E369719+ 3-phase translation of AGS-1 (+strand): . . . . . . 83296 AAAAAGCTACAGCTTTCAAGGTTTTGATCTTTTTCTCTTAATTAATTGCTTTACTTTTTG K K L Q L S R F - S F S L N - L L Y F L K S Y S F Q G F D L F L L I N C F T F C K A T A F K V L I F F S - L I A L L F . . . . . . 83356 CCATGGCCGACGAAATTATAACATCGGAGGGAGTTTCAAGTTCGTCTGAGCTGAACTCGT P W P T K L - H R R E F Q V R L S - T R H G R R N Y N I G G S F K F V - A E L V A M A D E I I T S E G V S S S S E L N S . . . : . . . 83416 CGTCTCGTATAATATGTCGGGT : TTGTCAAAAGCAATTTTCGCAGTATACCTGCCCTCGAT R L V - Y V G : F V K S N F R S I P A L D V S Y N M S G : L S K A I F A V Y L P S M S S R I I C R V : C Q K Q F S Q Y T C P R . . . . : . . 84977 GTAATACCCGTTATTGCTCTCTGCCTTGTTACAAG : TCTCATAGTCTTCGTTGCACCGAAT V I P V I A L C L V T S : L I V F V A P N - Y P L L L S A L L Q : V S - S S L H R I C N T R Y C S L P C Y K : S H S L R C T E . . . . . . 85225 CCTTTATGAGAGAGAATGTCATGGAGGAACTACAGCATTTGCAACCAAATGATGGAAGTA P L - E R M S W R N Y S I C N Q M M E V L Y E R E C H G G T T A F A T K - W K - S F M R E N V M E E L Q H L Q P N D G S . . . . . . 85285 AGCAGAAAATGCTAGACATACTTAAACGATTCCACTCAGAAGATGAAGCAGACATCATGG S R K C - T Y L N D S T Q K M K Q T S W A E N A R H T - T I P L R R - S R H H G K Q K M L D I L K R F H S E D E A D I M . 85345 ATGAAGATG M K M - R D E D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-8_AGS-1_PPS_1 (83337 83437,84939 85011,85200 85352) (frame '0'; 327 bp, 109 residues) 1 LIALLFAMAD EIITSEGVSS SSELNSSSRI ICRVCQKQFS QYTCPRCNTR YCSLPCYKSH 61 SLRCTESFMR ENVMEELQHL QPNDGSKQKM LDILKRFHSE DEADIMDED PGL 9 (+ strand): 86421 87035 AGS-1 (86421 87035) SCR (e 1.000) Exon 1 86421 87035 ( 615 n); score: 1.000 PGS (86421 87035) SGN-E369718- 3-phase translation of AGS-1 (+strand): . . . . . . 86421 AAACATGCTCATCAGCCTTCAGACACACGGGGGGCCTGCAATTCGCATTGGGGCTAATCA K H A H Q P S D T R G A C N S H W G - S N M L I S L Q T H G G P A I R I G A N Q T C S S A F R H T G G L Q F A L G L I . . . . . . 86481 ACGACACAATAACCCTTCTTCATCTTGATACTCCAGCCGTAGTTTGCCTGCTTTGTGACC T T Q - P F F I L I L Q P - F A C F V T R H N N P S S S - Y S S R S L P A L - P N D T I T L L H L D T P A V V C L L C D . . . . . . 86541 TAAGGAGACTAATCCAACACGCAGAGAAGGATTTGAAGTCGGAGAAGTACTGCAAGTCCA - G D - S N T Q R R I - S R R S T A S P K E T N P T R R E G F E V G E V L Q V Q L R R L I Q H A E K D L K S E K Y C K S . . . . . . 86601 AAAGTTCTGAAATGAAAACGAAGCTCAAGTCTGCAGAAAGGAAGGTTTATTTTATCATGT K V L K - K R S S S L Q K G R F I L S C K F - N E N E A Q V C R K E G L F Y H V K S S E M K T K L K S A E R K V Y F I M . . . . . . 86661 GTTGGGCTCACGAGCAGCCAAAAGAAGCATGGTCTTCCATAGCAGCCATTGTCGAGGCAG V G L T S S Q K K H G L P - Q P L S R Q L G S R A A K R S M V F H S S H C R G R C W A H E Q P K E A W S S I A A I V E A . . . . . . 86721 AGAAGAGCCGACTAGTTGAATTCGTAGGGAGTAAAACAAGTGTTCCAAAAATGACGAAAG R R A D - L N S - G V K Q V F Q K - R K E E P T S - I R R E - N K C S K N D E S E K S R L V E F V G S K T S V P K M T K . . . . . . 86781 TACAGAGTGAGGGCAGGCCTCTGATTAAGGAGGTTGAATAACTGTCTGTTCCTTCTGCAT Y R V R A G L - L R R L N N C L F L L H T E - G Q A S D - G G - I T V C S F C M V Q S E G R P L I K E V E - L S V P S A . . . . . . 86841 GACAAGCTGCAGCAGATAACACAAGATCAGTGATGCTTGCAAAAATGTTAAGTTCAGATC D K L Q Q I T Q D Q - C L Q K C - V Q I T S C S R - H K I S D A C K N V K F R S - Q A A A D N T R S V M L A K M L S S D . . . . . . 86901 ACTGAGTTTTGACTTTGTATAATTGCCTGAATTATTTTATTCACTTTCTCTTTGGAACTT T E F - L C I I A - I I L F T F S L E L L S F D F V - L P E L F Y S L S L W N F H - V L T L Y N C L N Y F I H F L F G T . . . . . . 86961 TTTCATGGGCCACTGAAACAATTTAAGAGAAGAAAAGCAAAAGCTTATATGGAAAAGAGA F H G P L K Q F K R R K A K A Y M E K R F M G H - N N L R E E K Q K L I W K R D F S W A T E T I - E K K S K S L Y G K E . . 87021 TAATTTACTTATCTA - F T Y L N L L I I I Y L S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-9_AGS-1_PPS_1 (86423 86821) (frame '0'; 396 bp, 132 residues) 1 TCSSAFRHTG GLQFALGLIN DTITLLHLDT PAVVCLLCDL RRLIQHAEKD LKSEKYCKSK 61 SSEMKTKLKS AERKVYFIMC WAHEQPKEAW SSIAAIVEAE KSRLVEFVGS KTSVPKMTKV 121 QSEGRPLIKE VE- 3-phase translation of AGS-1 (-strand): . . . . . . 87035 TAGATAAGTAAATTATCTCTTTTCCATATAAGCTTTTGCTTTTCTTCTCTTAAATTGTTT - I S K L S L F H I S F C F S S L K L F R - V N Y L F S I - A F A F L L L N C F D K - I I S F P Y K L L L F F S - I V . . . . . . 86975 CAGTGGCCCATGAAAAAGTTCCAAAGAGAAAGTGAATAAAATAATTCAGGCAATTATACA Q W P M K K F Q R E S E - N N S G N Y T S G P - K S S K E K V N K I I Q A I I Q S V A H E K V P K R K - I K - F R Q L Y . . . . . . 86915 AAGTCAAAACTCAGTGATCTGAACTTAACATTTTTGCAAGCATCACTGATCTTGTGTTAT K S K L S D L N L T F L Q A S L I L C Y S Q N S V I - T - H F C K H H - S C V I K V K T Q - S E L N I F A S I T D L V L . . . . . . 86855 CTGCTGCAGCTTGTCATGCAGAAGGAACAGACAGTTATTCAACCTCCTTAATCAGAGGCC L L Q L V M Q K E Q T V I Q P P - S E A C C S L S C R R N R Q L F N L L N Q R P S A A A C H A E G T D S Y S T S L I R G . . . . . . 86795 TGCCCTCACTCTGTACTTTCGTCATTTTTGGAACACTTGTTTTACTCCCTACGAATTCAA C P H S V L S S F L E H L F Y S L R I Q A L T L Y F R H F W N T C F T P Y E F N L P S L C T F V I F G T L V L L P T N S . . . . . . 86735 CTAGTCGGCTCTTCTCTGCCTCGACAATGGCTGCTATGGAAGACCATGCTTCTTTTGGCT L V G S S L P R Q W L L W K T M L L L A - S A L L C L D N G C Y G R P C F F W L T S R L F S A S T M A A M E D H A S F G . . . . . . 86675 GCTCGTGAGCCCAACACATGATAAAATAAACCTTCCTTTCTGCAGACTTGAGCTTCGTTT A R E P N T - - N K P S F L Q T - A S F L V S P T H D K I N L P F C R L E L R F C S - A Q H M I K - T F L S A D L S F V . . . . . . 86615 TCATTTCAGAACTTTTGGACTTGCAGTACTTCTCCGACTTCAAATCCTTCTCTGCGTGTT S F Q N F W T C S T S P T S N P S L R V H F R T F G L A V L L R L Q I L L C V L F I S E L L D L Q Y F S D F K S F S A C . . . . . . 86555 GGATTAGTCTCCTTAGGTCACAAAGCAGGCAAACTACGGCTGGAGTATCAAGATGAAGAA G L V S L G H K A G K L R L E Y Q D E E D - S P - V T K Q A N Y G W S I K M K K W I S L L R S Q S R Q T T A G V S R - R . . . . . . 86495 GGGTTATTGTGTCGTTGATTAGCCCCAATGCGAATTGCAGGCCCCCCGTGTGTCTGAAGG G L L C R - L A P M R I A G P P C V - R G Y C V V D - P Q C E L Q A P R V S E G R V I V S L I S P N A N C R P P V C L K . . 86435 CTGATGAGCATGTTT L M S M F - - A C A D E H V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-9_AGS-1_PPS_1 (86898 86668) (frame '0'; 228 bp, 76 residues) 1 SELNIFASIT DLVLSAAACH AEGTDSYSTS LIRGLPSLCT FVIFGTLVLL PTNSTSRLFS 61 ASTMAAMEDH ASFGCS- PGL 10 (+ strand): 87415 88245 AGS-1 (87415 88245) SCR (e 0.997) Exon 1 87415 88245 ( 831 n); score: 0.997 PGS (87415 87962) SGN-E303026+ PGS (87446 87864) SGN-E274403+ PGS (87447 88182) SGN-E346310+ PGS (87449 88020) SGN-E303164+ PGS (87457 88020) SGN-E302454+ PGS (87462 88105) SGN-E208126+ PGS (87517 87899) SGN-E243275+ PGS (87599 88183) SGN-E275216+ PGS (87695 88245) SGN-E268865+ 3-phase translation of AGS-1 (+strand): . . . . . . 87415 TTTTCTTTTATTGTCATTTCATAGAACAGTTAGAGAGCAATCATCGGAAAATTCTTAATG F S F I V I S - N S - R A I I G K F L M F L L L S F H R T V R E Q S S E N S - - F F Y C H F I E Q L E S N H R K I L N . . . . . . 87475 AACACATAACAAGCAAAAACTTTCACCGGAAAATTGTAGAGGAATCGGAAAAAATGGGTG N T - Q A K T F T G K L - R N R K K W V T H N K Q K L S P E N C R G I G K N G - E H I T S K N F H R K I V E E S E K M G . . . . . . 87535 ATGTAGCCGATAAGATAGCATATTTTCAAGCGATCACCGGGGTGGAAGACACCGATTTGT M - P I R - H I F K R S P G W K T P I C C S R - D S I F S S D H R G G R H R F V D V A D K I A Y F Q A I T G V E D T D L . . . . . . 87595 GCACTGAGATCCTCGCCGCCCATGGCTGGGATCTCGAACTGGCGATCTCTGTTTTTACCT A L R S S P P M A G I S N W R S L F L P H - D P R R P W L G S R T G D L C F Y L C T E I L A A H G W D L E L A I S V F T . . . . . . 87655 CGCAAAATCACCATCCTGCTACTGAGTATGCATCCGAACCCACCACCTCCGATACACCAC R K I T I L L L S M H P N P P P P I H H A K S P S C Y - V C I R T H H L R Y T T S Q N H H P A T E Y A S E P T T S D T P . . . . . . 87715 CAACGAGCACGAATCAACCACCGGCAGAAACTGGGCTCGTTGCCGGTGGCAGCGGCGGAC Q R A R I N H R Q K L G S L P V A A A D N E H E S T T G R N W A R C R W Q R R T P T S T N Q P P A E T G L V A G G S G G . . . . . . 87775 CGCCGGGATTAGCTTGGAAGATTATTACTCTCCCCTTCTCCATCATTTCTGGCAGTCTAG R R D - L G R L L L S P S P S F L A V - A G I S L E D Y Y S P L L H H F W Q S R P P G L A W K I I T L P F S I I S G S L . . . . . . 87835 GATTGATTTCAGGTGCTGTGGGGTTGGGTGTATGGGCGGCAGGTGGTGTACTTTCGTATT D - F Q V L W G W V Y G R Q V V Y F R I I D F R C C G V G C M G G R W C T F V F G L I S G A V G L G V W A A G G V L S Y . . . . . . 87895 CGTTGAGAATGATCGGTTTCAATTTGGGGCGAAATAGTGAATCCTCTTCACCTTTGGTAT R - E - S V S I W G E I V N P L H L W Y V E N D R F Q F G A K - - I L F T F G I S L R M I G F N L G R N S E S S S P L V . . . . . . 87955 CTGTAACTGCATCAGCAGCGGAGGCAATGAGTTTCGTGGATAGTTTTGATAGGGATTTTG L - L H Q Q R R Q - V S W I V L I G I L C N C I S S G G N E F R G - F - - G F W S V T A S A A E A M S F V D S F D R D F . . . . . . 88015 GGAGTATTAGGCCGAGTTTTATTGCTGAAGGTTTTATGGATGCTTTGCAGAGGTCTAGGC G V L G R V L L L K V L W M L C R G L G E Y - A E F Y C - R F Y G C F A E V - A G S I R P S F I A E G F M D A L Q R S R . . . . . . 88075 ATGAGTTCAAGCTGTTTTTTGTGTATTTACATTCGCCTGAGCATCCAGATACCCCTGTGT M S S S C F L C I Y I R L S I Q I P L C - V Q A V F C V F T F A - A S R Y P C V H E F K L F F V Y L H S P E H P D T P V . . . . . . 88135 TTTGTGAAAGGACTTTGTGTAATGAAGCATTGGTAGCATTTATCAATGAGAATTTTGTTG F V K G L C V M K H W - H L S M R I L L L - K D F V - - S I G S I Y Q - E F C C F C E R T L C N E A L V A F I N E N F V . . . . . . 88195 CTTGGGGCGGGAGTATTAGAGCTAGTGAGGGTTTCAAGATGAGTAATAGCT L G A G V L E L V R V S R - V I A L G R E Y - S - - G F Q D E - - A W G G S I R A S E G F K M S N S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-10_AGS-1_PPS_1 (87417 88244) (frame '0'; 828 bp, 276 residues) 1 FFYCHFIEQL ESNHRKILNE HITSKNFHRK IVEESEKMGD VADKIAYFQA ITGVEDTDLC 61 TEILAAHGWD LELAISVFTS QNHHPATEYA SEPTTSDTPP TSTNQPPAET GLVAGGSGGP 121 PGLAWKIITL PFSIISGSLG LISGAVGLGV WAAGGVLSYS LRMIGFNLGR NSESSSPLVS 181 VTASAAEAMS FVDSFDRDFG SIRPSFIAEG FMDALQRSRH EFKLFFVYLH SPEHPDTPVF 241 CERTLCNEAL VAFINENFVA WGGSIRASEG FKMSNS 3-phase translation of AGS-1 (-strand): . . . . . . 88245 AGCTATTACTCATCTTGAAACCCTCACTAGCTCTAATACTCCCGCCCCAAGCAACAAAAT S Y Y S S - N P H - L - Y S R P K Q Q N A I T H L E T L T S S N T P A P S N K I L L L I L K P S L A L I L P P Q A T K . . . . . . 88185 TCTCATTGATAAATGCTACCAATGCTTCATTACACAAAGTCCTTTCACAAAACACAGGGG S H - - M L P M L H Y T K S F H K T Q G L I D K C Y Q C F I T Q S P F T K H R G F S L I N A T N A S L H K V L S Q N T G . . . . . . 88125 TATCTGGATGCTCAGGCGAATGTAAATACACAAAAAACAGCTTGAACTCATGCCTAGACC Y L D A Q A N V N T Q K T A - T H A - T I W M L R R M - I H K K Q L E L M P R P V S G C S G E C K Y T K N S L N S C L D . . . . . . 88065 TCTGCAAAGCATCCATAAAACCTTCAGCAATAAAACTCGGCCTAATACTCCCAAAATCCC S A K H P - N L Q Q - N S A - Y S Q N P L Q S I H K T F S N K T R P N T P K I P L C K A S I K P S A I K L G L I L P K S . . . . . . 88005 TATCAAAACTATCCACGAAACTCATTGCCTCCGCTGCTGATGCAGTTACAGATACCAAAG Y Q N Y P R N S L P P L L M Q L Q I P K I K T I H E T H C L R C - C S Y R Y Q R L S K L S T K L I A S A A D A V T D T K . . . . . . 87945 GTGAAGAGGATTCACTATTTCGCCCCAAATTGAAACCGATCATTCTCAACGAATACGAAA V K R I H Y F A P N - N R S F S T N T K - R G F T I S P Q I E T D H S Q R I R K G E E D S L F R P K L K P I I L N E Y E . . . . . . 87885 GTACACCACCTGCCGCCCATACACCCAACCCCACAGCACCTGAAATCAATCCTAGACTGC V H H L P P I H P T P Q H L K S I L D C Y T T C R P Y T Q P H S T - N Q S - T A S T P P A A H T P N P T A P E I N P R L . . . . . . 87825 CAGAAATGATGGAGAAGGGGAGAGTAATAATCTTCCAAGCTAATCCCGGCGGTCCGCCGC Q K - W R R G E - - S S K L I P A V R R R N D G E G E S N N L P S - S R R S A A P E M M E K G R V I I F Q A N P G G P P . . . . . . 87765 TGCCACCGGCAACGAGCCCAGTTTCTGCCGGTGGTTGATTCGTGCTCGTTGGTGGTGTAT C H R Q R A Q F L P V V D S C S L V V Y A T G N E P S F C R W L I R A R W W C I L P P A T S P V S A G G - F V L V G G V . . . . . . 87705 CGGAGGTGGTGGGTTCGGATGCATACTCAGTAGCAGGATGGTGATTTTGCGAGGTAAAAA R R W W V R M H T Q - Q D G D F A R - K G G G G F G C I L S S R M V I L R G K N S E V V G S D A Y S V A G W - F C E V K . . . . . . 87645 CAGAGATCGCCAGTTCGAGATCCCAGCCATGGGCGGCGAGGATCTCAGTGCACAAATCGG Q R S P V R D P S H G R R G S Q C T N R R D R Q F E I P A M G G E D L S A Q I G T E I A S S R S Q P W A A R I S V H K S . . . . . . 87585 TGTCTTCCACCCCGGTGATCGCTTGAAAATATGCTATCTTATCGGCTACATCACCCATTT C L P P R - S L E N M L S Y R L H H P F V F H P G D R L K I C Y L I G Y I T H F V S S T P V I A - K Y A I L S A T S P I . . . . . . 87525 TTTCCGATTCCTCTACAATTTTCCGGTGAAAGTTTTTGCTTGTTATGTGTTCATTAAGAA F P I P L Q F S G E S F C L L C V H - E F R F L Y N F P V K V F A C Y V F I K N F S D S S T I F R - K F L L V M C S L R . . . . . . 87465 TTTTCCGATGATTGCTCTCTAACTGTTCTATGAAATGACAATAAAAGAAAA F S D D C S L T V L - N D N K R K F P M I A L - L F Y E M T I K E I F R - L L S N C S M K - Q - K K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-10_AGS-1_PPS_1 (88243 87728) (frame '0'; 513 bp, 171 residues) 1 LLLILKPSLA LILPPQATKF SLINATNASL HKVLSQNTGV SGCSGECKYT KNSLNSCLDL 61 CKASIKPSAI KLGLILPKSL SKLSTKLIAS AADAVTDTKG EEDSLFRPKL KPIILNEYES 121 TPPAAHTPNP TAPEINPRLP EMMEKGRVII FQANPGGPPL PPATSPVSAG G- PGL 11 (+ strand): 90393 93974 AGS-1 (90393 90410,90509 90712,90905 91153,93951 93974) SCR (e 0.889 d 1.000 a 0.781,e 0.877 d 0.972 a 1.000,e 0.825 d 0.000 a 0.000,e 0.708) Exon 1 90393 90410 ( 18 n); score: 0.889 Intron 1 90411 90508 ( 98 n); Pd: 1.000 Pa: 0.781 Exon 2 90509 90712 ( 204 n); score: 0.877 Intron 2 90713 90904 ( 192 n); Pd: 0.972 Pa: 1.000 Exon 3 90905 91153 ( 249 n); score: 0.825 Intron 3 91154 93950 (2797 n); Pd: 0.000 Pa: 0.000 Exon 4 93951 93974 ( 24 n); score: 0.708 PGS (90393 90410,90509 90712,90905 91153,93951 93974) SGN-E277014+ 3-phase translation of AGS-1 (+strand): . . : . . . . 90393 GCACTAGAGGCTGATCAG : GCTAGAGAGCGTCAGAGGCAAGAAGAGCAAGAGCGGCAGGAA A L E A D Q : A R E R Q R Q E E Q E R Q E H - R L I R : L E S V R G K K S K S G R K T R G - S : G - R A S E A R R A R A A G . . . . . . 90551 AGGGAAGCTGCTGAAGCTGAAAGGAAAAGAAAGGAGGAAGAAGAGGCTCGTGAAAGAGCA R E A A E A E R K R K E E E E A R E R A G K L L K L K G K E R R K K R L V K E Q K G S C - S - K E K K G G R R G S - K S . . . . . . 90611 GCTCGTGAAGCTGCTGAAAGAGAAGCTGCATTGGCTAAAATGCGCGAGGAGAAATTACAG A R E A A E R E A A L A K M R E E K L Q L V K L L K E K L H W L K C A R R N Y S S S - S C - K R S C I G - N A R G E I T . . . . . : . 90671 TCACTGGGCCCTGAACCTGCAAAGGGTCCCGATGTTACTCAA : GTTTTGGTAAGGTTTCCT S L G P E P A K G P D V T Q : V L V R F P H W A L N L Q R V P M L L K : F W - G F L V T G P - T C K G S R C Y S : S F G K V S . . . . . . 90923 ACTGGTGAGCGCAAAGAGAGAAGATTTCAATGTAGTACAACTATACAATCTCTGTATGAC T G E R K E R R F Q C S T T I Q S L Y D L V S A K R E D F N V V Q L Y N L C M T Y W - A Q R E K I S M - Y N Y T I S V - . . . . . . 90983 TATGTTGATTCTCTTGGATGCCTAGAGGTTGAAAAGTACAGTCTCGTGTCCAACTTCCCT Y V D S L G C L E V E K Y S L V S N F P M L I L L D A - R L K S T V S C P T S L L C - F S W M P R G - K V Q S R V Q L P . . . . . . 91043 CGTACAGTCTATGGCTCAGAGAAGCTCGCTCTGTCGTTGAAAGATGCTGGATTACACCCT R T V Y G S E K L A L S L K D A G L H P V Q S M A Q R S S L C R - K M L D Y T L S Y S L W L R E A R S V V E R C W I T P . . . . . . : 91103 CAGGCCAGCCTTTTTGTTGAGTTGAACTCATGAGAACGATTGCTGTCTTGT : ATTGGGCTA Q A S L F V E L N S - E R L L S C : I G L R P A F L L S - T H E N D C C L V : L G - S G Q P F C - V E L M R T I A V L : Y W A . . 93960 GACAAATTCTCCAAG D K F S K T N S P R Q I L Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-11_AGS-1_PPS_1 (90393 90410,90509 90712,90905 91135) (frame '1'; 450 bp, 150 residues) 1 ALEADQARER QRQEEQERQE REAAEAERKR KEEEEARERA AREAAEREAA LAKMREEKLQ 61 SLGPEPAKGP DVTQVLVRFP TGERKERRFQ CSTTIQSLYD YVDSLGCLEV EKYSLVSNFP 121 RTVYGSEKLA LSLKDAGLHP QASLFVELNS - AGS-2 (90646 90712,90905 91277) SCR (e 1.000 d 0.972 a 1.000,e 1.000) Exon 1 90646 90712 ( 67 n); score: 1.000 Intron 1 90713 90904 ( 192 n); Pd: 0.972 Pa: 1.000 Exon 2 90905 91277 ( 373 n); score: 1.000 PGS (90646 90712,90905 91277) SGN-E355297+ PGS (90646 90712,90905 91277) SGN-E356750+ PGS (90646 90712,90905 91277) SGN-E349777+ 3-phase translation of AGS-2 (+strand): . . . . . . 90646 TAAAATGCGCGAGGAGAAATTACAGTCACTGGGCCCTGAACCTGCAAAGGGTCCCGATGT - N A R G E I T V T G P - T C K G S R C K M R E E K L Q S L G P E P A K G P D V K C A R R N Y S H W A L N L Q R V P M . : . . . . . 90706 TACTCAA : GTTTTGGTAAGGTTTCCTACTGGTGAGCGCAAAGAGAGAAGATTTCAATGTAG Y S : S F G K V S Y W - A Q R E K I S M - T Q : V L V R F P T G E R K E R R F Q C S L L K : F W - G F L L V S A K R E D F N V . . . . . . 90958 TACAACTATACAATCTCTGTATGACTATGTTGATTCTCTTGGATGCCTAGAGGTTGAAAA Y N Y T I S V - L C - F S W M P R G - K T T I Q S L Y D Y V D S L G C L E V E K V Q L Y N L C M T M L I L L D A - R L K . . . . . . 91018 GTACAGTCTCGTGTCCAACTTCCCTCGTACAGTCTATGGCTCAGAGAAGCTCGCTCTGTC V Q S R V Q L P S Y S L W L R E A R S V Y S L V S N F P R T V Y G S E K L A L S S T V S C P T S L V Q S M A Q R S S L C . . . . . . 91078 GTTGAAAGATGCTGGATTACACCCTCAGGCCAGCCTTTTTGTTGAGTTGAACTCATGAGA V E R C W I T P S G Q P F C - V E L M R L K D A G L H P Q A S L F V E L N S - E R - K M L D Y T L R P A F L L S - T H E . . . . . . 91138 ACGATTGCTGTCTTGTGCTAGAGTTGATAACTTTTGTTGAAAATGGTTGTATGTGAATTA T I A V L C - S - - L L L K M V V C E L R L L S C A R V D N F C - K W L Y V N - N D C C L V L E L I T F V E N G C M - I . . . . . . 91198 GAACTGGGCAATGAATTCAATTAGATGCAGTTTTGTGTATTGTACCCTTGTTAAATAATT E L G N E F N - M Q F C V L Y P C - I I N W A M N S I R C S F V Y C T L V K - F R T G Q - I Q L D A V L C I V P L L N N . . 91258 TTCTACTGCTTTAACGTTAA F Y C F N V S T A L T L F L L L - R - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-11_AGS-2_PPS_1 (90647 90712,90905 91135) (frame '2'; 294 bp, 98 residues) 1 KMREEKLQSL GPEPAKGPDV TQVLVRFPTG ERKERRFQCS TTIQSLYDYV DSLGCLEVEK 61 YSLVSNFPRT VYGSEKLALS LKDAGLHPQA SLFVELNS- AGS-3 (92143 92525) SCR (e 1.000) Exon 1 92143 92525 ( 383 n); score: 1.000 PGS (92143 92525) SGN-E329801+ 3-phase translation of AGS-3 (+strand): . . . . . . 92143 AAATTCTCTATTAACAAACTATGATTTTTTAGGGATTTTGAGATTTGTTTGCCCTAATTA K F S I N K L - F F R D F E I C L P - L N S L L T N Y D F L G I L R F V C P N - I L Y - Q T M I F - G F - D L F A L I . . . . . . 92203 GCTATATGCGTTTCAATACTGTGTCCGATTGTTAATCAGTTGAATTCTTCAAATGGGGGT A I C V S I L C P I V N Q L N S S N G G L Y A F Q Y C V R L L I S - I L Q M G V S Y M R F N T V S D C - S V E F F K W G . . . . . . 92263 TCTCAATTTTTCCGGTTTAATTTTGCTGAAAGCTGAGCTTTTTCAATTCCAATTCCGATT S Q F F R F N F A E S - A F S I P I P I L N F S G L I L L K A E L F Q F Q F R F F S I F P V - F C - K L S F F N S N S D . . . . . . 92323 TGGAAGAGTTATTGATTCCTATTCTGTCGCCTGTGAAGCATTTTCTGAACCTTTTCTTTG W K S Y - F L F C R L - S I F - T F S L G R V I D S Y S V A C E A F S E P F L - L E E L L I P I L S P V K H F L N L F F . . . . . . 92383 ATTTCATTAATTTTCTTCTTCTCTAGGTTTACTTCTTTTTTTGTGTTATTTTTTTTTGTT I S L I F F F S R F T S F F V L F F F V F H - F S S S L G L L L F L C Y F F L F D F I N F L L L - V Y F F F C V I F F C . . . . . . 92443 TCTGGGTGTGGAGAGATGAATTCTGCCTGTTCTTGGTTTGAAAAAGTGAAATTAGATGAA S G C G E M N S A C S W F E K V K L D E L G V E R - I L P V L G L K K - N - M N F W V W R D E F C L F L V - K S E I R - . . . 92503 CCTGAAATTGTTGAAGTGTCACC P E I V E V S L K L L K C H T - N C - S V T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 92525 GGTGACACTTCAACAATTTCAGGTTCATCTAATTTCACTTTTTCAAACCAAGAACAGGCA G D T S T I S G S S N F T F S N Q E Q A V T L Q Q F Q V H L I S L F Q T K N R Q - H F N N F R F I - F H F F K P R T G . . . . . . 92465 GAATTCATCTCTCCACACCCAGAAACAAAAAAAAATAACACAAAAAAAGAAGTAAACCTA E F I S P H P E T K K N N T K K E V N L N S S L H T Q K Q K K I T Q K K K - T - R I H L S T P R N K K K - H K K R S K P . . . . . . 92405 GAGAAGAAGAAAATTAATGAAATCAAAGAAAAGGTTCAGAAAATGCTTCACAGGCGACAG E K K K I N E I K E K V Q K M L H R R Q R R R K L M K S K K R F R K C F T G D R R E E E N - - N Q R K G S E N A S Q A T . . . . . . 92345 AATAGGAATCAATAACTCTTCCAAATCGGAATTGGAATTGAAAAAGCTCAGCTTTCAGCA N R N Q - L F Q I G I G I E K A Q L S A I G I N N S S K S E L E L K K L S F Q Q E - E S I T L P N R N W N - K S S A F S . . . . . . 92285 AAATTAAACCGGAAAAATTGAGAACCCCCATTTGAAGAATTCAACTGATTAACAATCGGA K L N R K N - E P P F E E F N - L T I G N - T G K I E N P H L K N S T D - Q S D K I K P E K L R T P I - R I Q L I N N R . . . . . . 92225 CACAGTATTGAAACGCATATAGCTAATTAGGGCAAACAAATCTCAAAATCCCTAAAAAAT H S I E T H I A N - G K Q I S K S L K N T V L K R I - L I R A N K S Q N P - K I T Q Y - N A Y S - L G Q T N L K I P K K . . . 92165 CATAGTTTGTTAATAGAGAATTT H S L L I E N I V C - - R I S - F V N R E F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-11_AGS-3_PPS_1 (92525 92331) (frame '1'; 192 bp, 64 residues) 1 GDTSTISGSS NFTFSNQEQA EFISPHPETK KNNTKKEVNL EKKKINEIKE KVQKMLHRRQ 61 NRNQ- AGS-4 (92997 93058) SCR (e 0.952) Exon 1 92997 93058 ( 62 n); score: 0.952 PGS (92997 93058) SGN-E578224- 3-phase translation of AGS-4 (+strand): . . . . . . 92997 GTTTATTAATCAACAAAGCAAAAATAAAATTCTTAAAAGATGAGATAAATTCAGAAGCAC V Y - S T K Q K - N S - K M R - I Q K H F I N Q Q S K N K I L K R - D K F R S T L L I N K A K I K F L K D E I N S E A . 93057 TT L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 93058 AAGTGCTTCTGAATTTATCTCATCTTTTAAGAATTTTATTTTTGCTTTGTTGATTAATAA K C F - I Y L I F - E F Y F C F V D - - S A S E F I S S F K N F I F A L L I N K V L L N L S H L L R I L F L L C - L I . 92998 AC N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 94351 95365 AGS-1 (94351 94374,94460 94853,94931 95365) SCR (e 1.000 d 0.077 a 0.995,e 1.000 d 0.919 a 0.993,e 0.998) Exon 1 94351 94374 ( 24 n); score: 1.000 Intron 1 94375 94459 ( 85 n); Pd: 0.077 Pa: 0.995 Exon 2 94460 94853 ( 394 n); score: 1.000 Intron 2 94854 94930 ( 77 n); Pd: 0.919 Pa: 0.993 Exon 3 94931 95365 ( 435 n); score: 0.998 PGS (94351 94374,94460 94853,94931 95191) SGN-E551384+ PGS (94353 94374,94460 94853,94931 95068) SGN-E264468+ PGS (94582 94853,94931 95365) SGN-E353867+ 3-phase translation of AGS-1 (+strand): . . . : . . . 94351 CAAATTTATAAGAAAGTCACGTCG : GGAATAAAGCCAGCGTCTTTAGCAAAAGTAGCAGAT Q I Y K K V T S : G I K P A S L A K V A D K F I R K S R R : E - S Q R L - Q K - Q I N L - E S H V : G N K A S V F S K S S R . . . . . . 94496 CCTCATGTAAAACAATTTGTCGAGAAATGTTTGGCCCCAGTATCAGTAAGATTGAGTGCA P H V K Q F V E K C L A P V S V R L S A L M - N N L S R N V W P Q Y Q - D - V Q S S C K T I C R E M F G P S I S K I E C . . . . . . 94556 GCTGAACTTTTGGAAGACCCGTTTCTTTCATCTGAGAGCTTGAAAACCCCCGCATGTGAT A E L L E D P F L S S E S L K T P A C D L N F W K T R F F H L R A - K P P H V I S - T F G R P V S F I - E L E N P R M - . . . . . . 94616 CATTTGCAGCCCACAAATTTTGTGCCTGAAGCACAAAGCTTGCCAAAGTCGATTTTCATG H L Q P T N F V P E A Q S L P K S I F M I C S P Q I L C L K H K A C Q S R F S W S F A A H K F C A - S T K L A K V D F H . . . . . . 94676 GATGTAGACCTTGCACAAAAGATGCACAGTGGCATGTCCATAGAAAGCAAGACTGCATCT D V D L A Q K M H S G M S I E S K T A S M - T L H K R C T V A C P - K A R L H L G C R P C T K D A Q W H V H R K Q D C I . . . . . . 94736 CCTCATTTTTCTAATCTAGAAATCGTGAGACGAAATGGGAGAAACGAATTTAGGTTACAA P H F S N L E I V R R N G R N E F R L Q L I F L I - K S - D E M G E T N L G Y K S S F F - S R N R E T K W E K R I - V T . . . . . . : 94796 GGTGACAAGCATGATGATCGTTCAATTGTGTTTTCACTGCGAATAGCTGAATTGGCTG : GT G D K H D D R S I V F S L R I A E L A : G V T S M M I V Q L C F H C E - L N W L : V R - Q A - - S F N C V F T A N S - I G W : . . . . . . 94933 CGGATCAGGCATGTGCACTTTGTATATTGTATTGATGCTGACACTGTGATGTCAATAGCT R I R H V H F V Y C I D A D T V M S I A G S G M C T L Y I V L M L T L - C Q - L S D Q A C A L C I L Y - C - H C D V N S . . . . . . 94993 AGTGAGATGGCAGAGGAGCTTGAGTTGTTGAATGACGATGTGGCAACAATAGCTGAATTG S E M A E E L E L L N D D V A T I A E L V R W Q R S L S C - M T M W Q Q - L N - - - D G R G A - V V E - R C G N N S - I . . . . . . 95053 ATTACCGACTTCATTTTCAAACTCTCAACAATCCAGAAATATTCTTTTGGGAGTTTGTCT I T D F I F K L S T I Q K Y S F G S L S L P T S F S N S Q Q S R N I L L G V C L D Y R L H F Q T L N N P E I F F W E F V . . . . . . 95113 GCAGTGAATAACTTATCCGATGATTCAACTTTGATAATCGAAGATCCTATTGTCTGTGAA A V N N L S D D S T L I I E D P I V C E Q - I T Y P M I Q L - - S K I L L S V K C S E - L I R - F N F D N R R S Y C L - . . . . . . 95173 GGCATTACATCTTTGAATCAAGGGATAGCATCAACCTCAGATGTGGAGTATAACAACGTT G I T S L N Q G I A S T S D V E Y N N V A L H L - I K G - H Q P Q M W S I T T F R H Y I F E S R D S I N L R C G V - Q R . . . . . . 95233 TTAAGGTCTCTTGGCAATGAGTCAGATAACATCAATGTCCACACTCAAAGCAACAGTAAG L R S L G N E S D N I N V H T Q S N S K - G L L A M S Q I T S M S T L K A T V R F K V S W Q - V R - H Q C P H S K Q Q - . . . . . . 95293 GGGAGTCTAGGTGATGCTGTAATGAGTGATTGTACCACCAAAACTTCAGGGATCTCCTCT G S L G D A V M S D C T T K T S G I S S G V - V M L - - V I V P P K L Q G S P L G E S R - C C N E - L Y H Q N F R D L L . . 95353 GATAGCTTGCTGA D S L L I A C - - - L A Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-12_AGS-1_PPS_1 (94351 94374,94460 94853,94931 95364) (frame '1'; 852 bp, 284 residues) 1 QIYKKVTSGI KPASLAKVAD PHVKQFVEKC LAPVSVRLSA AELLEDPFLS SESLKTPACD 61 HLQPTNFVPE AQSLPKSIFM DVDLAQKMHS GMSIESKTAS PHFSNLEIVR RNGRNEFRLQ 121 GDKHDDRSIV FSLRIAELAG RIRHVHFVYC IDADTVMSIA SEMAEELELL NDDVATIAEL 181 ITDFIFKLST IQKYSFGSLS AVNNLSDDST LIIEDPIVCE GITSLNQGIA STSDVEYNNV 241 LRSLGNESDN INVHTQSNSK GSLGDAVMSD CTTKTSGISS DSLL PGL 13 (+ strand): 97074 97892 AGS-1 (97074 97892) SCR (e 0.999) Exon 1 97074 97892 ( 819 n); score: 0.999 PGS (97074 97777) SGN-E368500+ PGS (97074 97548) SGN-E242654+ PGS (97129 97892) SGN-E368499- 3-phase translation of AGS-1 (+strand): . . . . . . 97074 TCTTCTCTCTCTCTGTACTATTCAAGCATTCACCTAATCCAATAATACAGAAACAAAAAA S S L S L Y Y S S I H L I Q - Y R N K K L L S L C T I Q A F T - S N N T E T K K F S L S V L F K H S P N P I I Q K Q K . . . . . . 97134 AAAAAGATTCTCCAAAATTTGAATGCAAATATATAGGTAAGAGGTAATAATTCATACATA K K I L Q N L N A N I - V R G N N S Y I K R F S K I - M Q I Y R - E V I I H T Y K K D S P K F E C K Y I G K R - - F I H . . . . . . 97194 TCATTTGTCACATACAAAAAAGAAAAAAGAAAAAAATTCAACCAATGGAAGAATCTGCAT S F V T Y K K E K R K K F N Q W K N L H H L S H T K K K K E K N S T N G R I C I I I C H I Q K R K K K K I Q P M E E S A . . . . . . 97254 CAGAAATCAAGACTCCTCTGTGTAAGACTCTTTTTTCTCCAACACAATTTAATTCTTTAA Q K S R L L C V R L F F L Q H N L I L - R N Q D S S V - D S F F S N T I - F F K S E I K T P L C K T L F S P T Q F N S L . . . . . . 97314 AAATGTCGATATTAGATCCTAAAAAAACGAATCAGTTCTCACACGTTGTAACAACATTTA K C R Y - I L K K R I S S H T L - Q H L N V D I R S - K N E S V L T R C N N I Y K M S I L D P K K T N Q F S H V V T T F . . . . . . 97374 TGAAAGGATCCGAAAGGTGTATTTCAGATCCAAAACTGAAATCTCTCTCTGTTTTGTAGT - K D P K G V F Q I Q N - N L S L F C S E R I R K V Y F R S K T E I S L C F V V M K G S E R C I S D P K L K S L S V L - . . . . . . 97434 ATCCAATTTTGATCATGGCATTGCATCAAGCTCTAATGTTAAAGTCCACAAGGATGATGA I Q F - S W H C I K L - C - S P Q G - - S N F D H G I A S S S N V K V H K D D E Y P I L I M A L H Q A L M L K S T R M M . . . . . . 97494 AGATGAAAATTCTCCTGTCGAACAAGTTGCTCTTACTGTTCCAACAACTGATGATCCTTC R - K F S C R T S C S Y C S N N - - S F D E N S P V E Q V A L T V P T T D D P S K M K I L L S N K L L L L F Q Q L M I L . . . . . . 97554 ATTACCTGTTTTAACTTTTCGAATGTGGTTTTTAGGGACAGTTTCTTGTGTTTTGTTATC I T C F N F S N V V F R D S F L C F V I L P V L T F R M W F L G T V S C V L L S H Y L F - L F E C G F - G Q F L V F C Y . . . . . . 97614 ATTTCTGAACCAATTCTTTTGGTACAGAACAGAGCCATTGACAATTACAGCAATTTCAGC I S E P I L L V Q N R A I D N Y S N F S F L N Q F F W Y R T E P L T I T A I S A H F - T N S F G T E Q S H - Q L Q Q F Q . . . . . . 97674 TCAAATAGCTGTGGTTCCTTTGGGTCAACTTATGGCTGCAAAGATAACAAAAAGGGTATT S N S C G S F G S T Y G C K D N K K G I Q I A V V P L G Q L M A A K I T K R V F L K - L W F L W V N L W L Q R - Q K G Y . . . . . . 97734 TTTGCAAGGATCTAAATGGGAATTCAGTTTAAATCCAGGCCCTTTTAATGTTAAAGAACA F A R I - M G I Q F K S R P F - C - R T L Q G S K W E F S L N P G P F N V K E H F C K D L N G N S V - I Q A L L M L K N . . . . . . 97794 TGTCCTCATCACCATTTTTGCAAATTCTGGTGCTGGAACTGTTTATGCTATTCATGTTGT C P H H H F C K F W C W N C L C Y S C C V L I T I F A N S G A G T V Y A I H V V M S S S P F L Q I L V L E L F M L F M L . . . . 97854 CACTGCTGTTAAAGTCTTTTATAAGAAAGACATTACCTT H C C - S L L - E R H Y L T A V K V F Y K K D I T S L L L K S F I R K T L P Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-13_AGS-1_PPS_1 (97336 97890) (frame '2'; 555 bp, 185 residues) 1 KNESVLTRCN NIYERIRKVY FRSKTEISLC FVVSNFDHGI ASSSNVKVHK DDEDENSPVE 61 QVALTVPTTD DPSLPVLTFR MWFLGTVSCV LLSFLNQFFW YRTEPLTITA ISAQIAVVPL 121 GQLMAAKITK RVFLQGSKWE FSLNPGPFNV KEHVLITIFA NSGAGTVYAI HVVTAVKVFY 181 KKDIT 3-phase translation of AGS-1 (-strand): . . . . . . 97892 AAGGTAATGTCTTTCTTATAAAAGACTTTAACAGCAGTGACAACATGAATAGCATAAACA K V M S F L - K T L T A V T T - I A - T R - C L S Y K R L - Q Q - Q H E - H K Q G N V F L I K D F N S S D N M N S I N . . . . . . 97832 GTTCCAGCACCAGAATTTGCAAAAATGGTGATGAGGACATGTTCTTTAACATTAAAAGGG V P A P E F A K M V M R T C S L T L K G F Q H Q N L Q K W - - G H V L - H - K G S S S T R I C K N G D E D M F F N I K R . . . . . . 97772 CCTGGATTTAAACTGAATTCCCATTTAGATCCTTGCAAAAATACCCTTTTTGTTATCTTT P G F K L N S H L D P C K N T L F V I F L D L N - I P I - I L A K I P F L L S L A W I - T E F P F R S L Q K Y P F C Y L . . . . . . 97712 GCAGCCATAAGTTGACCCAAAGGAACCACAGCTATTTGAGCTGAAATTGCTGTAATTGTC A A I S - P K G T T A I - A E I A V I V Q P - V D P K E P Q L F E L K L L - L S C S H K L T Q R N H S Y L S - N C C N C . . . . . . 97652 AATGGCTCTGTTCTGTACCAAAAGAATTGGTTCAGAAATGATAACAAAACACAAGAAACT N G S V L Y Q K N W F R N D N K T Q E T M A L F C T K R I G S E M I T K H K K L Q W L C S V P K E L V Q K - - Q N T R N . . . . . . 97592 GTCCCTAAAAACCACATTCGAAAAGTTAAAACAGGTAATGAAGGATCATCAGTTGTTGGA V P K N H I R K V K T G N E G S S V V G S L K T T F E K L K Q V M K D H Q L L E C P - K P H S K S - N R - - R I I S C W . . . . . . 97532 ACAGTAAGAGCAACTTGTTCGACAGGAGAATTTTCATCTTCATCATCCTTGTGGACTTTA T V R A T C S T G E F S S S S S L W T L Q - E Q L V R Q E N F H L H H P C G L - N S K S N L F D R R I F I F I I L V D F . . . . . . 97472 ACATTAGAGCTTGATGCAATGCCATGATCAAAATTGGATACTACAAAACAGAGAGAGATT T L E L D A M P - S K L D T T K Q R E I H - S L M Q C H D Q N W I L Q N R E R F N I R A - C N A M I K I G Y Y K T E R D . . . . . . 97412 TCAGTTTTGGATCTGAAATACACCTTTCGGATCCTTTCATAAATGTTGTTACAACGTGTG S V L D L K Y T F R I L S - M L L Q R V Q F W I - N T P F G S F H K C C Y N V - F S F G S E I H L S D P F I N V V T T C . . . . . . 97352 AGAACTGATTCGTTTTTTTAGGATCTAATATCGACATTTTTAAAGAATTAAATTGTGTTG R T D S F F - D L I S T F L K N - I V L E L I R F F R I - Y R H F - R I K L C W E N - F V F L G S N I D I F K E L N C V . . . . . . 97292 GAGAAAAAAGAGTCTTACACAGAGGAGTCTTGATTTCTGATGCAGATTCTTCCATTGGTT E K K E S Y T E E S - F L M Q I L P L V R K K S L T Q R S L D F - C R F F H W L G E K R V L H R G V L I S D A D S S I G . . . . . . 97232 GAATTTTTTTCTTTTTTCTTTTTTGTATGTGACAAATGATATGTATGAATTATTACCTCT E F F S F F F F V C D K - Y V - I I T S N F F L F S F L Y V T N D M Y E L L P L - I F F F F L F C M - Q M I C M N Y Y L . . . . . . 97172 TACCTATATATTTGCATTCAAATTTTGGAGAATCTTTTTTTTTTTGTTTCTGTATTATTG Y L Y I C I Q I L E N L F F F V S V L L T Y I F A F K F W R I F F F L F L Y Y W L P I Y L H S N F G E S F F F C F C I I . . . . 97112 GATTAGGTGAATGCTTGAATAGTACAGAGAGAGAGAAGA D - V N A - I V Q R E R R I R - M L E - Y R E R E G L G E C L N S T E R E K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-13_AGS-1_PPS_1 (97673 97446) (frame '1'; 225 bp, 75 residues) 1 AEIAVIVNGS VLYQKNWFRN DNKTQETVPK NHIRKVKTGN EGSSVVGTVR ATCSTGEFSS 61 SSSLWTLTLE LDAMP- AGS-2 (97083 97274,97433 97778) SCR (e 0.974 d 0.996 a 0.716,e 0.980) Exon 1 97083 97274 ( 192 n); score: 0.974 Intron 1 97275 97432 ( 158 n); Pd: 0.996 Pa: 0.716 Exon 2 97433 97778 ( 346 n); score: 0.980 PGS (97083 97274,97433 97778) SGN-E334047+ PGS (97102 97274,97433 97548) SGN-E331076+ 3-phase translation of AGS-2 (+strand): . . . . . . 97083 TCTCTGTACTATTCAAGCATTCACCTAATCCAATAATACAGAAACAAAAAAAAAAAGATT S L Y Y S S I H L I Q - Y R N K K K K I L C T I Q A F T - S N N T E T K K K R F S V L F K H S P N P I I Q K Q K K K D . . . . . . 97143 CTCCAAAATTTGAATGCAAATATATAGGTAAGAGGTAATAATTCATACATATCATTTGTC L Q N L N A N I - V R G N N S Y I S F V S K I - M Q I Y R - E V I I H T Y H L S S P K F E C K Y I G K R - - F I H I I C . . . . . . 97203 ACATACAAAAAAGAAAAAAGAAAAAAATTCAACCAATGGAAGAATCTGCATCAGAAATCA T Y K K E K R K K F N Q W K N L H Q K S H T K K K K E K N S T N G R I C I R N Q H I Q K R K K K K I Q P M E E S A S E I . . : . . . . 97263 AGACTCCTCTGT : TATCCAATTTTGATCATGGCATTGCATCAAGCTCTAATGTTAAAGTCC R L L C : Y P I L I M A L H Q A L M L K S D S S V : I Q F - S W H C I K L - C - S P K T P L : L S N F D H G I A S S S N V K V . . . . . . 97481 ACAAGGATGATGAAGATGAAAATTCTCCTGTCGAACAAGTTGCTCTTACTGTTCCAACAA T R M M K M K I L L S N K L L L L F Q Q Q G - - R - K F S C R T S C S Y C S N N H K D D E D E N S P V E Q V A L T V P T . . . . . . 97541 CTGATGATCCTTCATTACCTGTTTTAACTTTTCGAATGTGGTTTTTAGGGACAGTTTCTT L M I L H Y L F - L F E C G F - G Q F L - - S F I T C F N F S N V V F R D S F L T D D P S L P V L T F R M W F L G T V S . . . . . . 97601 GTGTTTTGTTATCATTTCTGAACCAATTCTTTTGGTACAGAACAGAGCCATTGACAATTA V F C Y H F - T N S F G T E Q S H - Q L C F V I I S E P I L L V Q N R A I D N Y C V L L S F L N Q F F W Y R T E P L T I . . . . . . 97661 CAGCAATTTCAGCTCAAATAGCTGTGGTTCCTTTGGGTCAACTTATGGCTGCAAAGATAA Q Q F Q L K - L W F L W V N L W L Q R - S N F S S N S C G S F G S T Y G C K D N T A I S A Q I A V V P L G Q L M A A K I . . . . . . 97721 CAAAAAGGGTATTTTTGCAAGGATCTAAATGGGAATTCAGTTTAAATCCAGGCCCTTT Q K G Y F C K D L N G N S V - I Q A L K K G I F A R I - M G I Q F K S R P F T K R V F L Q G S K W E F S L N P G P Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-13_AGS-2_PPS_1 (97184 97274,97433 97776) (frame '0'; 435 bp, 145 residues) 1 FIHIICHIQK RKKKKIQPME ESASEIKTPL LSNFDHGIAS SSNVKVHKDD EDENSPVEQV 61 ALTVPTTDDP SLPVLTFRMW FLGTVSCVLL SFLNQFFWYR TEPLTITAIS AQIAVVPLGQ 121 LMAAKITKRV FLQGSKWEFS LNPGP PGL 14 (+ strand): 102043 104841 AGS-1 (102043 102432,103636 103996,104425 104841) SCR (e 1.000 d 0.967 a 0.962,e 1.000 d 0.996 a 0.995,e 1.000) Exon 1 102043 102432 ( 390 n); score: 1.000 Intron 1 102433 103635 (1203 n); Pd: 0.967 Pa: 0.962 Exon 2 103636 103996 ( 361 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 Pa: 0.995 Exon 3 104425 104841 ( 417 n); score: 1.000 PGS (102043 102432,103636 103791) SGN-E341887+ PGS (102050 102432,103636 103816) SGN-E233655+ PGS (103766 103996,104425 104841) SGN-E241885+ PGS (103766 103996,104425 104724) SGN-E241918+ 3-phase translation of AGS-1 (+strand): . . . . . . 102043 TAAGAAGAAAAGCTGAGTATGAAGAGCACATCAATTTCCTCATTACTTCCATATCCAAAA - E E K L S M K S T S I S S L L P Y P K K K K S - V - R A H Q F P H Y F H I Q K R R K A E Y E E H I N F L I T S I S K . . . . . . 102103 ATCCTCTTCAGCAGAAGAGCATTTCCCCCAATTAATTTCTCAAGCACAGCTCCATTTTCA I L F S R R A F P P I N F S S T A P F S S S S A E E H F P Q L I S Q A Q L H F Q N P L Q Q K S I S P N - F L K H S S I F . . . . . . 102163 GGGCAGGCAAAATTTCTAAGCATAAATTGCAGTAATAGCTCGGAAAATGGTGAAATGGGG G Q A K F L S I N C S N S S E N G E M G G R Q N F - A - I A V I A R K M V K W G R A G K I S K H K L Q - - L G K W - N G . . . . . . 102223 AATTTGAAGGATGCATTGACTGGTATAGTGGACGAAAGAGTAGAGGAACTTTTGAAGAGA N L K D A L T G I V D E R V E E L L K R I - R M H - L V - W T K E - R N F - R E E F E G C I D W Y S G R K S R G T F E E . . . . . . 102283 GAAGAAAATAGGGTTTTACTTGATGGGTTGGAGAAAGCAACGCTGAGAGTAGAAATGGCA E E N R V L L D G L E K A T L R V E M A K K I G F Y L M G W R K Q R - E - K W Q R R K - G F T - W V G E S N A E S R N G . . . . . . 102343 AAGAAAGAACTTGCTGAAATTGAAAGACAAGAATTGGAGGCTAAATTGCTAAAGGATTAT K K E L A E I E R Q E L E A K L L K D Y R K N L L K L K D K N W R L N C - R I I K E R T C - N - K T R I G G - I A K G L . . . : . . . 102403 ATCACCCAGCTTGAAACTAGAACTTCTGAG : ATTGCAGAATGCCAGAAAGATATTTTAGAA I T Q L E T R T S E : I A E C Q K D I L E S P S L K L E L L R : L Q N A R K I F - K Y H P A - N - N F - : D C R M P E R Y F R . . . . . . 103666 GCAAGAGCAATGATTGAAGAAGCTGAGCGTTCCCTCAACGTTAGTGGTGATGCTAGAAAG A R A M I E E A E R S L N V S G D A R K Q E Q - L K K L S V P S T L V V M L E R S K S N D - R S - A F P Q R - W - C - K . . . . . . 103726 AGAGATCCAACAGACGGAGATGTAGTGAATAGAGATGAGGAAAGAGTAGAATCCGTAAAA R D P T D G D V V N R D E E R V E S V K E I Q Q T E M - - I E M R K E - N P - K E R S N R R R C S E - R - G K S R I R K . . . . . . 103786 GCAGCTTCACTTTCTGCAATTGTTGGCACACTTGCAGGACTTCCCATTTTCTTAAGTCGT A A S L S A I V G T L A G L P I F L S R Q L H F L Q L L A H L Q D F P F S - V V S S F T F C N C W H T C R T S H F L K S . . . . . . 103846 ATCTCCAGCAGTTCTGAGCTAATACTCCCTCTGTCAATCACATTTATTAGTTGTGCTTTG I S S S S E L I L P L S I T F I S C A L S P A V L S - Y S L C Q S H L L V V L C Y L Q Q F - A N T P S V N H I Y - L C F . . . . . . 103906 TTTGGTGTAACCTTCCGCTATGCTGTAAGAAGAGACTTCGATAATTTTCAACTCAAGTCA F G V T F R Y A V R R D F D N F Q L K S L V - P S A M L - E E T S I I F N S S Q V W C N L P L C C K K R L R - F S T Q V . . . . : . . 103966 GGAACATCTGCAGCATTTGGCGTTGTCAAAG : GCCTTGCTACACTTGGAGGTGGACCACCA G T S A A F G V V K : G L A T L G G G P P E H L Q H L A L S K : A L L H L E V D H H R N I C S I W R C Q R : P C Y T W R W T T . . . . . . 104454 TTGGAGTTGGATGCAGCCAGCTTCTGGTCCCATGCTCTTGATGGCGCAGTCTATGTCTCG L E L D A A S F W S H A L D G A V Y V S W S W M Q P A S G P M L L M A Q S M S R I G V G C S Q L L V P C S - W R S L C L . . . . . . 104514 GAGAATCTTTTGATCTTCCTTTTTGCTGGAGTTGGCCTGGATTTATGCTTTAAGCTGAGG E N L L I F L F A G V G L D L C F K L R R I F - S S F L L E L A W I Y A L S - G G E S F D L P F C W S W P G F M L - A E . . . . . . 104574 ATTTTGAGCCCTTTTCCCATTGATAGATCAATTTCAGAGACGGATAAAAGCTAAACATCT I L S P F P I D R S I S E T D K S - T S F - A L F P L I D Q F Q R R I K A K H L D F E P F S H - - I N F R D G - K L N I . . . . . . 104634 TGTTGCCTATTTATTACTTCTGAGTGTATATACAGAGACCCAGTAAATTAACTCTCTAAC C C L F I T S E C I Y R D P V N - L S N V A Y L L L L S V Y T E T Q - I N S L T L L P I Y Y F - V Y I Q R P S K L T L - . . . . . . 104694 AATTGCTTAGATAGAATTATACTTGAAAAGCGCCATTCACTGCAATTATCCATAAATTCA N C L D R I I L E K R H S L Q L S I N S I A - I E L Y L K S A I H C N Y P - I Q Q L L R - N Y T - K A P F T A I I H K F . . . . . . 104754 GTAAAATATTGTCAGGTCAGTCACAGGAGACTAGTTTCAGAAGGGATAAAGCTGCACTTC V K Y C Q V S H R R L V S E G I K L H F - N I V R S V T G D - F Q K G - S C T S S K I L S G Q S Q E T S F R R D K A A L . . . 104814 GAGTATCTTTCTGTCATTCAAGTTATCT E Y L S V I Q V I S I F L S F K L S R V S F C H S S Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-14_AGS-1_PPS_1 (102046 102432,103636 103996,104425 104627) (frame '1'; 948 bp, 316 residues) 1 EEKLSMKSTS ISSLLPYPKI LFSRRAFPPI NFSSTAPFSG QAKFLSINCS NSSENGEMGN 61 LKDALTGIVD ERVEELLKRE ENRVLLDGLE KATLRVEMAK KELAEIERQE LEAKLLKDYI 121 TQLETRTSEI AECQKDILEA RAMIEEAERS LNVSGDARKR DPTDGDVVNR DEERVESVKA 181 ASLSAIVGTL AGLPIFLSRI SSSSELILPL SITFISCALF GVTFRYAVRR DFDNFQLKSG 241 TSAAFGVVKG LATLGGGPPL ELDAASFWSH ALDGAVYVSE NLLIFLFAGV GLDLCFKLRI 301 LSPFPIDRSI SETDKS- AGS-2 (102284 102432,103605 103996,104425 104495) SCR (e 1.000 d 0.967 a 0.683,e 1.000 d 0.996 a 0.995,e 0.972) Exon 1 102284 102432 ( 149 n); score: 1.000 Intron 1 102433 103604 (1172 n); Pd: 0.967 Pa: 0.683 Exon 2 103605 103996 ( 392 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 Pa: 0.995 Exon 3 104425 104495 ( 71 n); score: 0.972 PGS (102284 102432,103605 103996,104425 104495) SGN-E340773+ 3-phase translation of AGS-2 (+strand): . . . . . . 102284 AAGAAAATAGGGTTTTACTTGATGGGTTGGAGAAAGCAACGCTGAGAGTAGAAATGGCAA K K I G F Y L M G W R K Q R - E - K W Q R K - G F T - W V G E S N A E S R N G K E N R V L L D G L E K A T L R V E M A . . . . . . 102344 AGAAAGAACTTGCTGAAATTGAAAGACAAGAATTGGAGGCTAAATTGCTAAAGGATTATA R K N L L K L K D K N W R L N C - R I I E R T C - N - K T R I G G - I A K G L Y K K E L A E I E R Q E L E A K L L K D Y . . . : . . . 102404 TCACCCAGCTTGAAACTAGAACTTCTGAG : TTAAGGTACTGATTGGTTGATGCAATTGAAG S P S L K L E L L S : - G T D W L M Q L K H P A - N - N F - : V K V L I G - C N - R I T Q L E T R T S E : L R Y - L V D A I E . . . . . . 103636 ATTGCAGAATGCCAGAAAGATATTTTAGAAGCAAGAGCAATGATTGAAGAAGCTGAGCGT I A E C Q K D I L E A R A M I E E A E R L Q N A R K I F - K Q E Q - L K K L S V D C R M P E R Y F R S K S N D - R S - A . . . . . . 103696 TCCCTCAACGTTAGTGGTGATGCTAGAAAGAGAGATCCAACAGACGGAGATGTAGTGAAT S L N V S G D A R K R D P T D G D V V N P S T L V V M L E R E I Q Q T E M - - I F P Q R - W - C - K E R S N R R R C S E . . . . . . 103756 AGAGATGAGGAAAGAGTAGAATCCGTAAAAGCAGCTTCACTTTCTGCAATTGTTGGCACA R D E E R V E S V K A A S L S A I V G T E M R K E - N P - K Q L H F L Q L L A H - R - G K S R I R K S S F T F C N C W H . . . . . . 103816 CTTGCAGGACTTCCCATTTTCTTAAGTCGTATCTCCAGCAGTTCTGAGCTAATACTCCCT L A G L P I F L S R I S S S S E L I L P L Q D F P F S - V V S P A V L S - Y S L T C R T S H F L K S Y L Q Q F - A N T P . . . . . . 103876 CTGTCAATCACATTTATTAGTTGTGCTTTGTTTGGTGTAACCTTCCGCTATGCTGTAAGA L S I T F I S C A L F G V T F R Y A V R C Q S H L L V V L C L V - P S A M L - E S V N H I Y - L C F V W C N L P L C C K . . . . . . 103936 AGAGACTTCGATAATTTTCAACTCAAGTCAGGAACATCTGCAGCATTTGGCGTTGTCAAA R D F D N F Q L K S G T S A A F G V V K E T S I I F N S S Q E H L Q H L A L S K K R L R - F S T Q V R N I C S I W R C Q . : . . . . . 103996 G : GCCTTGCTACACTTGGAGGTGGACCACCATTGGAGTTGGATGCAGCCAGCTTCTGGTCC : G L A T L G G G P P L E L D A A S F W S : A L L H L E V D H H W S W M Q P A S G P R : P C Y T W R W T T I G V G C S Q L L V . . 104484 CATGCTCTTGAT H A L D M L L P C S - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-14_AGS-2_PPS_1 (103609 103996,104425 104495) (frame '1'; 459 bp, 153 residues) 1 GTDWLMQLKI AECQKDILEA RAMIEEAERS LNVSGDARKR DPTDGDVVNR DEERVESVKA 61 ASLSAIVGTL AGLPIFLSRI SSSSELILPL SITFISCALF GVTFRYAVRR DFDNFQLKSG 121 TSAAFGVVKG LATLGGGPPL ELDAASFWSH ALD PGL 15 (- strand): 105600 104855 AGS-1 (105600 105483,105399 105286,105185 104855) SCR (e 1.000 d 0.883 a 0.927,e 1.000 d 0.959 a 0.998,e 1.000) Exon 1 105600 105483 ( 118 n); score: 1.000 Intron 1 105482 105400 ( 83 n); Pd: 0.883 Pa: 0.927 Exon 2 105399 105286 ( 114 n); score: 1.000 Intron 2 105285 105186 ( 100 n); Pd: 0.959 Pa: 0.998 Exon 3 105185 104855 ( 331 n); score: 1.000 PGS (105600 105483,105399 105286,105185 104855) SGN-E352914+ PGS (105308 105286,105185 104857) SGN-E217505- 3-phase translation of AGS-1 (-strand): . . . . . . 105600 ACTTGCTGGCTTGTGTGAGGGATACACTGGTTCAGACATTCTTGAAGCCTGCAAGCAAGC T C W L V - G I H W F R H S - S L Q A S L A G L C E G Y T G S D I L E A C K Q A L L A C V R D T L V Q T F L K P A S K . . . . . . : 105540 TGCCTTTATTCCTCTTGGGGAGTATTTGCAAGATGAGAAGAAAGCAGAGCAATCACAG : GC C L Y S S W G V F A R - E E S R A I T : G A F I P L G E Y L Q D E K K A E Q S Q : A L P L F L L G S I C K M R R K Q S N H R : . . . . . . 105397 ACCAAGACCATTGTCTCAGTCTGATATAGAGAGAGCAGTGGCTGAATCAAAGAGGACCAG T K T I V S V - Y R E S S G - I K E D Q P R P L S Q S D I E R A V A E S K R T R H Q D H C L S L I - R E Q W L N Q R G P . . . . . . : 105337 GGTTTCTGCTAAGAAACCAACTATTGTGAGCTTTCGGTTGGATGATTATGAG : GATTTAGA G F C - E T N Y C E L S V G - L - : G F R V S A K K P T I V S F R L D D Y E : D L D G F L L R N Q L L - A F G W M I M R : I - . . . . . . 105177 CTGAGACTGGCTCCAGTTGATGACACACTTGACATCCGTTGAAGATATCATTCTTTAGGC L R L A P V D D T L D I R - R Y H S L G - D W L Q L M T H L T S V E D I I L - A T E T G S S - - H T - H P L K I S F F R . . . . . . 105117 GTGGCCCAGCCCTTTTTGAATCTCAATGCTCTAACCTGTTTAGGAATTGGAAGATATATA V A Q P F L N L N A L T C L G I G R Y I W P S P F - I S M L - P V - E L E D I - R G P A L F E S Q C S N L F R N W K I Y . . . . . . 105057 GGTCATTTAACTTGCATTGTTTCAATGTTGTAAATACCATGAACAAGTAAGTAGTCATTG G H L T C I V S M L - I P - T S K - S L V I - L A L F Q C C K Y H E Q V S S H C R S F N L H C F N V V N T M N K - V V I . . . . . . 104997 TTACAAGGTTCAGTTTAAATTTCTCCTCCACGAGCGTTTAGCTGCAGCACACTCATGTGG L Q G S V - I S P P R A F S C S T L M W Y K V Q F K F L L H E R L A A A H S C G V T R F S L N F S S T S V - L Q H T H V . . . . . . 104937 ACGCATCCCCATAGTTTTTTTGAAGACTATATCATGTAATATTGTTTGTTATTATAAAGG T H P H S F F E D Y I M - Y C L L L - R R I P I V F L K T I S C N I V C Y Y K G D A S P - F F - R L Y H V I L F V I I K . . . 104877 AATTGTCTTTGGAAATACCCCAA N C L W K Y P I V F G N T P E L S L E I P Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-15_AGS-1_PPS_1 (105599 105483,105399 105286,105185 105174) (frame '2'; 240 bp, 80 residues) 1 LAGLCEGYTG SDILEACKQA AFIPLGEYLQ DEKKAEQSQA PRPLSQSDIE RAVAESKRTR 61 VSAKKPTIVS FRLDDYEDLD - >C08SLm0006K11.1-_PGL-15_AGS-1_PPS_2 (105047 104856) (frame '2'; 192 bp, 64 residues) 1 LALFQCCKYH EQVSSHCYKV QFKFLLHERL AAAHSCGRIP IVFLKTISCN IVCYYKGIVF 61 GNTP PGL 16 (- strand): 121587 107922 AGS-1 (110820 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 107922) SCR (e 1.000 d 1.000 a 0.935,e 1.000 d 0.795 a 0.910,e 1.000 d 0.990 a 0.984,e 1.000 d 0.998 a 0.974,e 1.000 d 0.986 a 0.933,e 0.993) Exon 1 110820 110576 ( 245 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 Pa: 0.935 Exon 2 110462 110259 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 Pa: 0.910 Exon 3 110100 110021 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 Pa: 0.984 Exon 4 109386 109311 ( 76 n); score: 1.000 Intron 4 109310 108691 ( 620 n); Pd: 0.998 Pa: 0.974 Exon 5 108690 108589 ( 102 n); score: 1.000 Intron 5 108588 108503 ( 86 n); Pd: 0.986 Pa: 0.933 Exon 6 108502 107922 ( 581 n); score: 0.993 PGS (108189 107922) SGN-E391675- PGS (108685 108589,108502 108046) SGN-E244235- PGS (108429 108121) SGN-E244305- PGS (110339 110259,110100 110021,109386 109311,108690 108589,108502 108187) SGN-E299397+ PGS (110728 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 108440) SGN-E320610+ PGS (110734 110576,110462 110259,110100 110021,109386 109311,108690 108660) SGN-E268597+ PGS (110731 110576,110462 110259,110100 110021,109386 109311,108690 108664) SGN-E245392+ PGS (110735 110576,110462 110259,110100 110021,109386 109311) SGN-E252880+ PGS (110720 110576,110462 110259,110100 110021,109386 109313) SGN-E306916+ PGS (110740 110576,110462 110259,110100 110021) SGN-E391676+ PGS (110820 110576,110462 110259,110100 110068) SGN-E244304+ 3-phase translation of AGS-1 (-strand): . . . . . . 110820 TACAGTATTCACGAATCTTTTTCTAACTAATAGTACTAATTCTATAATCCTAATTCTAAC Y S I H E S F S N - - Y - F Y N P N S N T V F T N L F L T N S T N S I I L I L T Q Y S R I F F - L I V L I L - S - F - . . . . . . 110760 CTAATCTACTTCGCCGGGCACAGATTAGATGCTGCCGTCGCCGTTCTCTATCTCCGCCAA L I Y F A G H R L D A A V A V L Y L R Q - S T S P G T D - M L P S P F S I S A N P N L L R R A Q I R C C R R R S L S P P . . . . . . 110700 TGAAATCTCTCACTTCCACTGCAGCTCTACTTCTTTCTACTTCTCCGCCGTCTTTACGAT - N L S L P L Q L Y F F L L L R R L Y D E I S H F H C S S T S F Y F S A V F T I M K S L T S T A A L L L S T S P P S L R . . . . . . 110640 CTTCTCTCTTACCAAGTCTTCGACCTCTTCTTTATCGAGCTCGCCTCCGCAACAAGCTTA L L S Y Q V F D L F F I E L A S A T S L F S L T K S S T S S L S S S P P Q Q A - S S L L P S L R P L L Y R A R L R N K L . : . . . . . 110580 ATCTG : AGAAGATTGGGAAATGGAACTTGCCGGGCAGAGTTTGCAAACGATGTGCCTTACG I - : E D W E M E L A G Q S L Q T M C L T S : E K I G K W N L P G R V C K R C A L R N L : R R L G N G T C R A E F A N D V P Y . . . . . . 110407 CCGCTGCTATTGGTGCTTGCATTTTGAGCTCGTGGGTTTTCCCGACTACTTACACGGAGG P L L L V L A F - A R G F S R L L T R R R C Y W C L H F E L V G F P D Y L H G G A A A I G A C I L S S W V F P T T Y T E . . . . . . 110347 AGGACGATGGTGAATCCACAATTGATTCTGCTGATGCGAGGTTTGCTGTCATGGCAATTA R T M V N P Q L I L L M R G L L S W Q L G R W - I H N - F C - C E V C C H G N Y E D D G E S T I D S A D A R F A V M A I . . . : . . . 110287 TCAGCTTCATTCCGTATTTTAATTGGATG : AGTTGGGTTTTTGCGTGGTTGGATACTGGGA S A S F R I L I G - : V G F L R G W I L G Q L H S V F - L D : E L G F C V V G Y W E I S F I P Y F N W M : S W V F A W L D T G . . . . . : . 110069 AACCACGTTATGCAGTTTATGCTCTTGTGTATTTGGCTCCATATTTAAG : CAACAACCTGT N H V M Q F M L L C I W L H I - : A T T C T T L C S L C S C V F G S I F K : Q Q P V K P R Y A V Y A L V Y L A P Y L S : N N L . . . . . . 109375 CTCTATCTCCTGAAGATAGCTTTCTACCCATTGCTAGCATCCTCTTGTGCATCTTCCACA L Y L L K I A F Y P L L A S S C A S S T S I S - R - L S T H C - H P L V H L P H S L S P E D S F L P I A S I L L C I F H . : . . . . . 109315 TTCAG : CTGGAAGCATTCCAAAAAGATGGAAACTTTCAGGTATTAGATAAATTTACGGAGA F S : W K H S K K M E T F R Y - I N L R R S : A G S I P K R W K L S G I R - I Y G D I Q : L E A F Q K D G N F Q V L D K F T E . . . . . : . 108635 CTGGAACTTCAATTGCTGGGAAGAAAGATGTAAGAATGTCAGAAAAG : GAGGAAACATACG L E L Q L L G R K M - E C Q K R : R K H T W N F N C W E E R C K N V R K : G G N I R T G T S I A G K K D V R M S E K : E E T Y . . . . . . 108489 ATCTTAAGAAGTTGTCTTCAGCAGATGAGAAAAGGAGTTGGGAAATTTCTAGAAGACCTG I L R S C L Q Q M R K G V G K F L E D L S - E V V F S R - E K E L G N F - K T - D L K K L S S A D E K R S W E I S R R P . . . . . . 108429 AAAATCGTGAGCACTTGAATGAAGATGGAGAAGATCCTACTTCAAGGAAGCATTAATTTT K I V S T - M K M E K I L L Q G S I N F K S - A L E - R W R R S Y F K E A L I L E N R E H L N E D G E D P T S R K H - F . . . . . . 108369 ACCTGTTTAAGGCTGAGTTTTGACGGGTCTAATGCCAATCCTTGGAAGGAGCACAATCAT T C L R L S F D G S N A N P W K E H N H P V - G - V L T G L M P I L G R S T I I Y L F K A E F - R V - C Q S L E G A Q S . . . . . . 108309 ATGCTGGTGTGTAACTGTGAAAGTAGTTCACTGACCAAACAATAAGCATCTTCTGTACAC M L V C N C E S S S L T K Q - A S S V H C W C V T V K V V H - P N N K H L L Y T Y A G V - L - K - F T D Q T I S I F C T . . . . . . 108249 AACGGATTGATCTTATCGTTCTATGATTCAACTCTACACCAAATATCTGAATTGTCTCTT N G L I L S F Y D S T L H Q I S E L S L T D - S Y R S M I Q L Y T K Y L N C L L Q R I D L I V L - F N S T P N I - I V S . . . . . . 108189 ATCAAAATTTCGACCAGGGCCTACTATGTTTTTGCAGTTGTAGAATAATGACTGCCTTAT I K I S T R A Y Y V F A V V E - - L P Y S K F R P G P T M F L Q L - N N D C L I Y Q N F D Q G L L C F C S C R I M T A L . . . . . . 108129 CTGTAAGAGTGTACTGTGGGTAACACCCCTCATGCTGTTTCTCTTCCTGAGTTCTATGTA L - E C T V G N T P H A V S L P E F Y V C K S V L W V T P L M L F L F L S S M Y S V R V Y C G - H P S C C F S S - V L C . . . . . . 108069 TCAATTGTAGTTTGTTTTCTCAGAATTTTCACGTTGAGCAGAGGTTCATGCTGTATTGGC S I V V C F L R I F T L S R G S C C I G Q L - F V F S E F S R - A E V H A V L A I N C S L F S Q N F H V E Q R F M L Y W . . . . . . 108009 AGGTGTGAGCTCATAAATTGTGTACCATCCTGAAGAATTTTCGTCAGTGCAGGCAGAACA R C E L I N C V P S - R I F V S A G R T G V S S - I V Y H P E E F S S V Q A E H Q V - A H K L C T I L K N F R Q C R Q N . . . 107949 TTATTTATCACAATTTCATATTCTGAAA L F I T I S Y S E Y L S Q F H I L K I I Y H N F I F - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-16_AGS-1_PPS_1 (110761 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 108374) (frame '0'; 774 bp, 258 residues) 1 PNLLRRAQIR CCRRRSLSPP MKSLTSTAAL LLSTSPPSLR SSLLPSLRPL LYRARLRNKL 61 NLRRLGNGTC RAEFANDVPY AAAIGACILS SWVFPTTYTE EDDGESTIDS ADARFAVMAI 121 ISFIPYFNWM SWVFAWLDTG KPRYAVYALV YLAPYLSNNL SLSPEDSFLP IASILLCIFH 181 IQLEAFQKDG NFQVLDKFTE TGTSIAGKKD VRMSEKEETY DLKKLSSADE KRSWEISRRP 241 ENREHLNEDG EDPTSRKH- AGS-2 (121587 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111089) SCR (e 0.950 d 0.994 a 0.997,e 1.000 d 0.998 a 0.966,e 1.000 d 0.976 a 0.998,e 1.000 d 0.960 a 0.998,e 1.000 d 0.981 a 0.890,e 1.000 d 0.998 a 0.974,e 1.000 d 0.984 a 0.999,e 1.000 d 0.995 a 0.995,e 1.000 d 0.620 a 0.975,e 1.000 d 0.788 a 0.968,e 1.000 d 0.989 a 0.584,e 0.993 d 0.932 a 0.837,e 1.000 d 0.000 a 0.992,e 1.000 d 0.994 a 0.419,e 1.000 d 0.878 a 0.990,e 1.000 d 0.943 a 0.783,e 1.000 d 0.000 a 0.985,e 1.000 d 0.417 a 0.989,e 1.000 d 0.992 a 0.861,e 1.000 d 0.000 a 0.993,e 1.000 d 0.980 a 0.993,e 1.000 d 0.000 a 0.995,e 1.000) Exon 1 121587 121317 ( 271 n); score: 0.950 Intron 1 121316 118490 (2827 n); Pd: 0.994 Pa: 0.997 Exon 2 118489 118235 ( 255 n); score: 1.000 Intron 2 118234 118154 ( 81 n); Pd: 0.998 Pa: 0.966 Exon 3 118153 118029 ( 125 n); score: 1.000 Intron 3 118028 117921 ( 108 n); Pd: 0.976 Pa: 0.998 Exon 4 117920 117876 ( 45 n); score: 1.000 Intron 4 117875 117171 ( 705 n); Pd: 0.960 Pa: 0.998 Exon 5 117170 117089 ( 82 n); score: 1.000 Intron 5 117088 116995 ( 94 n); Pd: 0.981 Pa: 0.890 Exon 6 116994 116926 ( 69 n); score: 1.000 Intron 6 116925 116693 ( 233 n); Pd: 0.998 Pa: 0.974 Exon 7 116692 116522 ( 171 n); score: 1.000 Intron 7 116521 116440 ( 82 n); Pd: 0.984 Pa: 0.999 Exon 8 116439 116374 ( 66 n); score: 1.000 Intron 8 116373 115697 ( 677 n); Pd: 0.995 Pa: 0.995 Exon 9 115696 115628 ( 69 n); score: 1.000 Intron 9 115627 115521 ( 107 n); Pd: 0.620 Pa: 0.975 Exon 10 115520 115449 ( 72 n); score: 1.000 Intron 10 115448 115368 ( 81 n); Pd: 0.788 Pa: 0.968 Exon 11 115367 115306 ( 62 n); score: 1.000 Intron 11 115305 114374 ( 932 n); Pd: 0.989 Pa: 0.584 Exon 12 114373 114095 ( 279 n); score: 0.993 Intron 12 114094 113632 ( 463 n); Pd: 0.932 Pa: 0.837 Exon 13 113631 113498 ( 134 n); score: 1.000 Intron 13 113497 113363 ( 135 n); Pd: 0.000 Pa: 0.992 Exon 14 113362 113268 ( 95 n); score: 1.000 Intron 14 113267 113202 ( 66 n); Pd: 0.994 Pa: 0.419 Exon 15 113201 113163 ( 39 n); score: 1.000 Intron 15 113162 113077 ( 86 n); Pd: 0.878 Pa: 0.990 Exon 16 113076 113017 ( 60 n); score: 1.000 Intron 16 113016 112869 ( 148 n); Pd: 0.943 Pa: 0.783 Exon 17 112868 112767 ( 102 n); score: 1.000 Intron 17 112766 112581 ( 186 n); Pd: 0.000 Pa: 0.985 Exon 18 112580 112529 ( 52 n); score: 1.000 Intron 18 112528 112423 ( 106 n); Pd: 0.417 Pa: 0.989 Exon 19 112422 112370 ( 53 n); score: 1.000 Intron 19 112369 112213 ( 157 n); Pd: 0.992 Pa: 0.861 Exon 20 112212 112148 ( 65 n); score: 1.000 Intron 20 112147 112050 ( 98 n); Pd: 0.000 Pa: 0.993 Exon 21 112049 111998 ( 52 n); score: 1.000 Intron 21 111997 111783 ( 215 n); Pd: 0.980 Pa: 0.993 Exon 22 111782 111672 ( 111 n); score: 1.000 Intron 22 111671 111578 ( 94 n); Pd: 0.000 Pa: 0.995 Exon 23 111577 111089 ( 489 n); score: 1.000 PGS (111512 111089) SGN-E342606+ PGS (112803 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111183) SGN-E318055- PGS (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) SGN-E351833+ PGS (112389 112370,112212 112148,112049 111998,111782 111672,111577 111224) SGN-E351355+ PGS (113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 112022) SGN-E307039+ PGS (114202 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112372) SGN-E207841+ PGS (113579 113498,113362 113268,113201 113163,113076 113017,112868 112787) SGN-E307137+ PGS (114244 114095,113631 113498,113362 113268,113201 113164) SGN-E320635+ PGS (116934 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095) SGN-E338957+ PGS (116991 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114284) SGN-E330413+ PGS (118169 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115333) SGN-E317202+ PGS (117106 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115336) SGN-E245973+ PGS (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) SGN-E394843+ PGS (118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116426) SGN-E397023+ PGS (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) SGN-E294859+ PGS (118122 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116433) SGN-E294860+ PGS (118153 118029,117920 117876,117170 117089,116994 116926,116692 116603) SGN-E200386+ PGS (121587 121317,118489 118235,118153 118029,117920 117876,117170 117118) SGN-E335423+ 3-phase translation of AGS-2 (-strand): . . . . . . 121587 TTCTCCGATGCTCTTCCGTCAACTTCAACGGCCATTTCCACAATCGGCAACTTATACTTC F S D A L P S T S T A I S T I G N L Y F S P M L F R Q L Q R P F P Q S A T Y T S L R C S S V N F N G H F H N R Q L I L . . . . . . 121527 ACTTTTATAACAAAGCGATTTTGCTTATTCGGTCCCAGCGGCGATGGGCGGCGGCGGTCC T F I T K R F C L F G P S G D G R R R S L L - Q S D F A Y S V P A A M G G G G P H F Y N K A I L L I R S Q R R W A A A V . . . . . . 121467 CAGAAATTATTCGGCGAATCCAAATGATTACAAGCTTCTCGAAGAAGTCGGTTATGGAGC Q K L F G E S K - L Q A S R R S R L W S R N Y S A N P N D Y K L L E E V G Y G A P E I I R R I Q M I T S F S K K S V M E . . . . . . 121407 GAGTGCAACAGTTTATAGAGCGATCTATCTTCCTTACAATGAAGTTATCGCAGTCAAGTG E C N S L - S D L S S L Q - S Y R S Q V S A T V Y R A I Y L P Y N E V I A V K C R V Q Q F I E R S I F L T M K L S Q S S . . . . : . . 121347 CTTGGATCTCGATCGCTGTAACAGCAATCTG : GATGACATACGCAGGGAAGCTCAAACTAT L G S R S L - Q Q S : G - H T Q G S S N Y L D L D R C N S N L : D D I R R E A Q T M A W I S I A V T A I W : M T Y A G K L K L . . . . . . 118460 GAGTTTGATAGACCATCCTAATGTAATAAAGTCATTCTGTTCATTTGTTGTTGAGAACTA E F D R P S - C N K V I L F I C C - E L S L I D H P N V I K S F C S F V V E N Y - V - - T I L M - - S H S V H L L L R T . . . . . . 118400 CCTATGGGTGGTAATGCCCTTCATGGCTGAGGGCTCTTGTCTACATCTCATGAAAATAGC P M G G N A L H G - G L L S T S H E N S L W V V M P F M A E G S C L H L M K I A T Y G W - C P S W L R A L V Y I S - K - . . . . . . 118340 ATATCCAGATGGATTCGAAGAATCTGCTATTTGTTCTATGTTGAAGGAAACTCTCAAGGC I S R W I R R I C Y L F Y V E G N S Q G Y P D G F E E S A I C S M L K E T L K A H I Q M D S K N L L F V L C - R K L S R . . . . . : . 118280 GTTGGAATATCTCCATCGACATGGGCACATACATCGAGATGTGAAG : GCTGGGAATATATT V G I S P S T W A H T S R C E : G W E Y I L E Y L H R H G H I H R D V K : A G N I L R W N I S I D M G T Y I E M - R : L G I Y . . . . . . 118139 ACTGGACACTAATGGGGCAGTAAAGCTGGGCGATTTTGGTGTTTCCGCATGCATGTTTGA T G H - W G S K A G R F W C F R M H V - L D T N G A V K L G D F G V S A C M F D Y W T L M G Q - S W A I L V F P H A C L . . . . . . : 118079 CAGTGGTGATAGACAGCGGTCTAGGAATACCTTTGTAGGAACTCCGTGCTG : GATGGCACC Q W - - T A V - E Y L C R N S V L : D G T S G D R Q R S R N T F V G T P C W : M A P T V V I D S G L G I P L - E L R A : G W H . . . . : . . 117911 AGAAGTTCTGCAGCCTGGAACTGGATATGATTTTAA : GGCTGACATTTGGTCATTTGGAAT R S S A A W N W I - F - : G - H L V I W N E V L Q P G T G Y D F K : A D I W S F G I Q K F C S L E L D M I L : R L T F G H L E . . . . . . : 117146 AACTGCCCTGGAATTGGCTCATGGTCATGCACCATTTTCAAAGTACCCTCCAATGAAG : GT N C P G I G S W S C T I F K V P S N E : G T A L E L A H G H A P F S K Y P P M K : V - L P W N W L M V M H H F Q S T L Q - R : . . . . . . 116992 ACTTCTGATGACAATACAGAATGCCCCTCCTGGACTTGATTATGACAGAGACAAAAAATT T S D D N T E C P S W T - L - Q R Q K I L L M T I Q N A P P G L D Y D R D K K F Y F - - Q Y R M P L L D L I M T E T K N . : . . . . . 116932 CTCTAAG : TCATTCAAGGAAATGGTTGCGATGTGTTTGGTGAAAGATCAAACTAAAAGGCC L - : V I Q G N G C D V F G E R S N - K A S K : S F K E M V A M C L V K D Q T K R P S L S : H S R K W L R C V W - K I K L K G . . . . . . 116639 AACTGCTGAGAAGTTGTTGAAGCATTCATTTTTCAAATATGCTAAGCCCCCAGAGCTTTC N C - E V V E A F I F Q I C - A P R A F T A E K L L K H S F F K Y A K P P E L S Q L L R S C - S I H F S N M L S P Q S F . . . . . . : 116579 TGTAAAAAAACTCTTTGCTGACCTGCCACCACTTTGGAATCGAGTTAAAGCTCTACAG : CT C K K T L C - P A T T L E S S - S S T : A V K K L F A D L P P L W N R V K A L Q : L L - K N S L L T C H H F G I E L K L Y S : . . . . . . 116437 TAAAGATGCTGCCCAACTAGCTTTGAAGAGAATGCCTTCTTCCGAGCAGGAAGCATTATC - R C C P T S F E E N A F F R A G S I I K D A A Q L A L K R M P S S E Q E A L S L K M L P N - L - R E C L L P S R K H Y . : . . . . . 116377 ACAG : AGTGAGTACCAACGGGGAGTTAGCGCCTGGAACTTTGATTTGGAGGATTTAAAGCT T : E - V P T G S - R L E L - F G G F K A Q : S E Y Q R G V S A W N F D L E D L K L H R : V S T N G E L A P G T L I W R I - S . . : . . . . 115640 TCAGGCTTCACTG : GTACAGGACGATGATGAAATACAAGAAATTAAGGAAGAAGATGATAC S G F T : G T G R - - N T R N - G R R - Y Q A S L : V Q D D D E I Q E I K E E D D T F R L H W : Y R T M M K Y K K L R K K M I . . . : . . . 115473 CATCAAAGCTTATATGAACTACAAG : GAGAAATCTGTTGCCCTACAATATGCTGGAAAATC H Q S L Y E L Q : G E I C C P T I C W K I I K A Y M N Y K : E K S V A L Q Y A G K S P S K L I - T T R : R N L L P Y N M L E N . . . : . . . 115332 AACCCCTAGAAAAGATTCTATTGCCAG : TGAGCAAGAAAGTATTGGTGAAGTGCCAGTAGC N P - K R F Y C Q : - A R K Y W - S A S S T P R K D S I A S : E Q E S I G E V P V A Q P L E K I L L P : V S K K V L V K C Q - . . . . . . 114340 TGAATACGAGATCAAGAAGGGAAAAGATTTGGAGAGCAGTACACCAGATTCTGATCATTG - I R D Q E G K R F G E Q Y T R F - S L E Y E I K K G K D L E S S T P D S D H W L N T R S R R E K I W R A V H Q I L I I . . . . . . 114280 GGAGAAAAATGGACTGAAGAAGAATGCATCAAAAACAGAGTTGCCACCCCTAACCTCAGA G E K W T E E E C I K N R V A T P N L R E K N G L K K N A S K T E L P P L T S D G R K M D - R R M H Q K Q S C H P - P Q . . . . . . 114220 CAGGGATGTCTTACCAGCCAAGAGTAGAACTCAAACACCAAAAGCTCGTCAAAGTCAGAG Q G C L T S Q E - N S N T K S S S K S E R D V L P A K S R T Q T P K A R Q S Q S T G M S Y Q P R V E L K H Q K L V K V R . . . . . . 114160 TGGACCACTTATGGCTGGCGCTGTACTTAGTCACTCGGCATCAGAAAGAGTTCGAAGCTC W T T Y G W R C T - S L G I R K S S K L G P L M A G A V L S H S A S E R V R S S V D H L W L A L Y L V T R H Q K E F E A . : . . . . . 114100 CGAAAG : AAGTGAGATTGAAAACCAACAACCAGGAGATAAAGCTCATCCAGTGCGAAGAGC R K : K - D - K P T T R R - S S S S A K S E R : S E I E N Q Q P G D K A H P V R R A P K : E V R L K T N N Q E I K L I Q C E E . . . . . . 113577 ACCCAGCTTTAGTGGGCCTTTAATGCTTCCAAATCGAGCTTCAGGAAATAGTTTATCAGC T Q L - W A F N A S K S S F R K - F I S P S F S G P L M L P N R A S G N S L S A H P A L V G L - C F Q I E L Q E I V Y Q . . : . . . . 113517 TCCGATTAAATCATCTGGGG : GATTCAAAGATTCCTTGGATGACAAGTCGAAGCCGAACTT S D - I I W G : I Q R F L G - Q V E A E L P I K S S G : G F K D S L D D K S K P N L L R L N H L G : D S K I P W M T S R S R T . . . . . . : 113322 GGTCCAAATAAAAGGCCGTTTCTCTGTAACATCAGAAAATGTAGATCTTGTAAAG : GATAT G P N K R P F L C N I R K C R S C K : G Y V Q I K G R F S V T S E N V D L V K : D I W S K - K A V S L - H Q K M - I L - R : I . . . . : . . 113196 TCCATTATGTACAGTTCCTCGACGATCTTCTCAA : GGATCACCACTTAGGAAGTCTGCTAG S I M Y S S S T I F S : R I T T - E V C - P L C T V P R R S S Q : G S P L R K S A S F H Y V Q F L D D L L K : D H H L G S L L . . . . : . . 113050 TGTTGGAGAATGGCTGGTCGAATCTAAACAAATG : CCACCCAGTCAACCGCCCAAGGAACT C W R M A G R I - T N : A T Q S T A Q G T V G E W L V E S K Q M : P P S Q P P K E L V L E N G W S N L N K C : H P V N R P R N . . . . . . 112842 TGGCGTTAATAATGTTCCTGCTTCAGTTCTCATGCCTCACTTACAAAATCTCTTTCAACA W R - - C S C F S S H A S L T K S L S T G V N N V P A S V L M P H L Q N L F Q Q L A L I M F L L Q F S C L T Y K I S F N . . : . . . . 112782 GACGTCAATTCAACAG : GATCTCATTGTAAATCTATTGAGTAGCTTGCAACTATCTGAGGC D V N S T : G S H C K S I E - L A T I - G T S I Q Q : D L I V N L L S S L Q L S E A R R Q F N R : I S L - I Y - V A C N Y L R . : . . . . . 112536 AGGAGATT : CTTCTCAAAATGGGAAGTTATCTCCCTTACAGCGCCCAGAGAGCAATGGAAT R R F : F S K W E V I S L T A P R E Q W N G D : S S Q N G K L S P L Q R P E S N G I Q E I : L L K M G S Y L P Y S A Q R A M E . : . . . . . 112370 T : GTTGAAGCAGCTGTTTCTGAGAGGGAGAAGCTATTATTAGTCAAAATATCTGAGCTTCA : C - S S C F - E G E A I I S Q N I - A S : V E A A V S E R E K L L L V K I S E L Q L : L K Q L F L R G R S Y Y - S K Y L S F . : . . . . . : 112153 GGCTAG : GATGATTAATTTGACAGATGAGTTAACTGCAGAAAAATTAAAATACTGGCAG : TT G - : D D - F D R - V N C R K I K I L A : V A R : M I N L T D E L T A E K L K Y W Q : L R L : G - L I - Q M S - L Q K N - N T G S : . . . . . . 111780 GCAACAGCGGTTAAATGCCATGTCAAGTTGCGGAGAGGATGGGGACAGAAGAGAGTTGGA A T A V K C H V K L R R G W G Q K R V G Q Q R L N A M S S C G E D G D R R E L E C N S G - M P C Q V A E R M G T E E S W . . . . . : . 111720 ATCCTGATGACAATGATACGTTTCATATATAAACACCGTGTATATTCAG : GTTTAAGTATA I L M T M I R F I Y K H R V Y S : G L S I S - - Q - Y V S Y I N T V Y I Q : V - V - N P D D N D T F H I - T P C I F R : F K Y . . . . . . 111566 GGAAGAGGCAGAGTGTAATTATTCTTATGTCACTGAATCATGCACTTGTCCTTGTTGAAT G R G R V - L F L C H - I M H L S L L N E E A E C N Y S Y V T E S C T C P C - I R K R Q S V I I L M S L N H A L V L V E . . . . . . 111506 AGCTCGTGTGGGAAGAATCCATCTCCAAGAATCAATAAACAAAATAATGAGCGCATAGAT S S C G K N P S P R I N K Q N N E R I D A R V G R I H L Q E S I N K I M S A - I - L V W E E S I S K N Q - T K - - A H R . . . . . . 111446 AATTTCTTCATTTGTTTGACAAGTAGGTGCTGAAAACAAGCTTCTTGTGCAGATTCACGT N F F I C L T S R C - K Q A S C A D S R I S S F V - Q V G A E N K L L V Q I H V - F L H L F D K - V L K T S F L C R F T . . . . . . 111386 CAAGGGATTATTATTTTTATTTAGATATAGAAGATTGTGGAGGGAGGAAGGGCGGGCTCA Q G I I I F I - I - K I V E G G R A G S K G L L F L F R Y R R L W R E E G R A Q S R D Y Y F Y L D I E D C G G R K G G L . . . . . . 111326 GCGGGCAGAGACTAGAGAGTGGGAGTGGTGGGTTCAATTTCGAATTTCATTTGTAGATCC A G R D - R V G V V G S I S N F I C R S R A E T R E W E W W V Q F R I S F V D P S G Q R L E S G S G G F N F E F H L - I . . . . . . 111266 TTAGTTTATGATGTAGTCAATATTAAGGTGTAATTTTGTATCATATATGATGATCATGAG L V Y D V V N I K V - F C I I Y D D H E - F M M - S I L R C N F V S Y M M I M R L S L - C S Q Y - G V I L Y H I - - S - . . . . . . 111206 ATGTGTGTTCAATAAAGCTTTTAGCTTCACAAGCATCCCTCAAGCCTAACATATTTGTGG M C V Q - S F - L H K H P S S L T Y L W C V F N K A F S F T S I P Q A - H I C G D V C S I K L L A S Q A S L K P N I F V . . . . . . 111146 CCGTTGCCAAATTGCCATTGCATAAATGGAGAGATGGATCTGGTACTGTTGGACCCAA P L P N C H C I N G E M D L V L L D P R C Q I A I A - M E R W I W Y C W T Q A V A K L P L H K W R D G S G T V G P Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-16_AGS-2_PPS_1 (121517 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111714) (frame '2'; 2214 bp, 738 residues) 1 QSDFAYSVPA AMGGGGPRNY SANPNDYKLL EEVGYGASAT VYRAIYLPYN EVIAVKCLDL 61 DRCNSNLDDI RREAQTMSLI DHPNVIKSFC SFVVENYLWV VMPFMAEGSC LHLMKIAYPD 121 GFEESAICSM LKETLKALEY LHRHGHIHRD VKAGNILLDT NGAVKLGDFG VSACMFDSGD 181 RQRSRNTFVG TPCWMAPEVL QPGTGYDFKA DIWSFGITAL ELAHGHAPFS KYPPMKVLLM 241 TIQNAPPGLD YDRDKKFSKS FKEMVAMCLV KDQTKRPTAE KLLKHSFFKY AKPPELSVKK 301 LFADLPPLWN RVKALQLKDA AQLALKRMPS SEQEALSQSE YQRGVSAWNF DLEDLKLQAS 361 LVQDDDEIQE IKEEDDTIKA YMNYKEKSVA LQYAGKSTPR KDSIASEQES IGEVPVAEYE 421 IKKGKDLESS TPDSDHWEKN GLKKNASKTE LPPLTSDRDV LPAKSRTQTP KARQSQSGPL 481 MAGAVLSHSA SERVRSSERS EIENQQPGDK AHPVRRAPSF SGPLMLPNRA SGNSLSAPIK 541 SSGGFKDSLD DKSKPNLVQI KGRFSVTSEN VDLVKDIPLC TVPRRSSQGS PLRKSASVGE 601 WLVESKQMPP SQPPKELGVN NVPASVLMPH LQNLFQQTSI QQDLIVNLLS SLQLSEAGDS 661 SQNGKLSPLQ RPESNGIVEA AVSEREKLLL VKISELQARM INLTDELTAE KLKYWQLQQR 721 LNAMSSCGED GDRRELES- AGS-3 (111875 111311) SCR (e 1.000) Exon 1 111875 111311 ( 565 n); score: 1.000 PGS (111875 111311) SGN-E329553- 3-phase translation of AGS-3 (-strand): . . . . . . 111875 AGGTCCAAAGTTAAAACAATTGAGGGGATGAACTGGAAAGGTTTATTTATAGCATCCAAG R S K V K T I E G M N W K G L F I A S K G P K L K Q L R G - T G K V Y L - H P S V Q S - N N - G D E L E R F I Y S I Q . . . . . . 111815 TGTGTTGCTAACAATGGTTTTTCACTGCTACAGTTGCAACAGCGGTTAAATGCCATGTCA C V A N N G F S L L Q L Q Q R L N A M S V L L T M V F H C Y S C N S G - M P C Q V C C - Q W F F T A T V A T A V K C H V . . . . . . 111755 AGTTGCGGAGAGGATGGGGACAGAAGAGAGTTGGAATCCTGATGACAATGATACGTTTCA S C G E D G D R R E L E S - - Q - Y V S V A E R M G T E E S W N P D D N D T F H K L R R G W G Q K R V G I L M T M I R F . . . . . . 111695 TATATAAACACCGTGTATATTCAGGTGTCTATTTGATGTTGCTAGAGCAGATAATTATGA Y I N T V Y I Q V S I - C C - S R - L - I - T P C I F R C L F D V A R A D N Y D I Y K H R V Y S G V Y L M L L E Q I I M . . . . . . 111635 TTTTTTTCACACACATATAAATGCCTTGAACAGACGTAATTGTCGTTTGCTTTTGCAGGT F F S H T Y K C L E Q T - L S F A F A G F F H T H I N A L N R R N C R L L L Q V I F F T H I - M P - T D V I V V C F C R . . . . . . 111575 TTAAGTATAGGAAGAGGCAGAGTGTAATTATTCTTATGTCACTGAATCATGCACTTGTCC L S I G R G R V - L F L C H - I M H L S - V - E E A E C N Y S Y V T E S C T C P F K Y R K R Q S V I I L M S L N H A L V . . . . . . 111515 TTGTTGAATAGCTCGTGTGGGAAGAATCCATCTCCAAGAATCAATAAACAAAATAATGAG L L N S S C G K N P S P R I N K Q N N E C - I A R V G R I H L Q E S I N K I M S L V E - L V W E E S I S K N Q - T K - - . . . . . . 111455 CGCATAGATAATTTCTTCATTTGTTTGACAAGTAGGTGCTGAAAACAAGCTTCTTGTGCA R I D N F F I C L T S R C - K Q A S C A A - I I S S F V - Q V G A E N K L L V Q A H R - F L H L F D K - V L K T S F L C . . . . . . 111395 GATTCACGTCAAGGGATTATTATTTTTATTTAGATATAGAAGATTGTGGAGGGAGGAAGG D S R Q G I I I F I - I - K I V E G G R I H V K G L L F L F R Y R R L W R E E G R F T S R D Y Y F Y L D I E D C G G R K . . . 111335 GCGGGCTCAGCGGGCAGAGACTAGA A G S A G R D - R A Q R A E T R G G L S G Q R L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 111311 TCTAGTCTCTGCCCGCTGAGCCCGCCCTTCCTCCCTCCACAATCTTCTATATCTAAATAA S S L C P L S P P F L P P Q S S I S K - L V S A R - A R P S S L H N L L Y L N K - S L P A E P A L P P S T I F Y I - I . . . . . . 111371 AAATAATAATCCCTTGACGTGAATCTGCACAAGAAGCTTGTTTTCAGCACCTACTTGTCA K - - S L D V N L H K K L V F S T Y L S N N N P L T - I C T R S L F S A P T C Q K I I I P - R E S A Q E A C F Q H L L V . . . . . . 111431 AACAAATGAAGAAATTATCTATGCGCTCATTATTTTGTTTATTGATTCTTGGAGATGGAT N K - R N Y L C A H Y F V Y - F L E M D T N E E I I Y A L I I L F I D S W R W I K Q M K K L S M R S L F C L L I L G D G . . . . . . 111491 TCTTCCCACACGAGCTATTCAACAAGGACAAGTGCATGATTCAGTGACATAAGAATAATT S S H T S Y S T R T S A - F S D I R I I L P T R A I Q Q G Q V H D S V T - E - L F F P H E L F N K D K C M I Q - H K N N . . . . . . 111551 ACACTCTGCCTCTTCCTATACTTAAACCTGCAAAAGCAAACGACAATTACGTCTGTTCAA T L C L F L Y L N L Q K Q T T I T S V Q H S A S S Y T - T C K S K R Q L R L F K Y T L P L P I L K P A K A N D N Y V C S . . . . . . 111611 GGCATTTATATGTGTGTGAAAAAAATCATAATTATCTGCTCTAGCAACATCAAATAGACA G I Y M C V K K I I I I C S S N I K - T A F I C V - K K S - L S A L A T S N R H R H L Y V C E K N H N Y L L - Q H Q I D . . . . . . 111671 CCTGAATATACACGGTGTTTATATATGAAACGTATCATTGTCATCAGGATTCCAACTCTC P E Y T R C L Y M K R I I V I R I P T L L N I H G V Y I - N V S L S S G F Q L S T - I Y T V F I Y E T Y H C H Q D S N S . . . . . . 111731 TTCTGTCCCCATCCTCTCCGCAACTTGACATGGCATTTAACCGCTGTTGCAACTGTAGCA F C P H P L R N L T W H L T A V A T V A S V P I L S A T - H G I - P L L Q L - Q L L S P S S P Q L D M A F N R C C N C S . . . . . . 111791 GTGAAAAACCATTGTTAGCAACACACTTGGATGCTATAAATAAACCTTTCCAGTTCATCC V K N H C - Q H T W M L - I N L S S S S - K T I V S N T L G C Y K - T F P V H P S E K P L L A T H L D A I N K P F Q F I . . . 111851 CCTCAATTGTTTTAACTTTGGACCT P Q L F - L W T L N C F N F G P P S I V L T L D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-16_AGS-3_PPS_1 (111676 111873) (frame '0'; 198 bp, 66 residues) 1 IYTVFIYETY HCHQDSNSLL SPSSPQLDMA FNRCCNCSSE KPLLATHLDA INKPFQFIPS 61 IVLTLD PGL 17 (- strand): 123363 122440 AGS-1 (123363 122440) SCR (e 0.996) Exon 1 123363 122440 ( 924 n); score: 0.996 PGS (122809 122440) SGN-E373918- PGS (123363 122681) SGN-E373919+ PGS (123363 122795) SGN-E300567+ PGS (123349 122867) SGN-E250014+ PGS (123363 122953) SGN-E262552+ 3-phase translation of AGS-1 (-strand): . . . . . . 123363 TCCAATCAACTAGCAAAAATGTGTAAAGGATTTCAACCAAACGAGAAAGATCGCCTGAAA S N Q L A K M C K G F Q P N E K D R L K P I N - Q K C V K D F N Q T R K I A - K Q S T S K N V - R I S T K R E R S P E . . . . . . 123303 ATCAAAGGCTTTTATCTCCATTTATCACCGACTGAAACCGTCTCACCGGATTCTCTAACT I K G F Y L H L S P T E T V S P D S L T S K A F I S I Y H R L K P S H R I L - L N Q R L L S P F I T D - N R L T G F S N . . . . . . 123243 CTGCATTATCTCCCTAGAATTAGTGAGAGTCCATTAGAGATTAATGATTCCAAAATCCGA L H Y L P R I S E S P L E I N D S K I R C I I S L E L V R V H - R L M I P K S D S A L S P - N - - E S I R D - - F Q N P . . . . . . 123183 TCCAATTCCCCCGGTTTCGTTACGCTTTACCGGGTAGTATCAGCTGACAATGTAACAACG S N S P G F V T L Y R V V S A D N V T T P I P P V S L R F T G - Y Q L T M - Q R I Q F P R F R Y A L P G S I S - Q C N N . . . . . . 123123 AAAGGTGTTATTTACGGAAGCAGGGACAGAGTTAAAGCCAGTGAAGGAGTAAAATTTGAA K G V I Y G S R D R V K A S E G V K F E K V L F T E A G T E L K P V K E - N L K E R C Y L R K Q G Q S - S Q - R S K I - . . . . . . 123063 ATATTCATGGCTGATGTAAAGCTCATAAAAGGTATTTTCATGAAAGATCTACACAACTGG I F M A D V K L I K G I F M K D L H N W Y S W L M - S S - K V F S - K I Y T T G N I H G - C K A H K R Y F H E R S T Q L . . . . . . 123003 AGAATCGATTGCAAGTGCGCTTTGTTGGAAAACGACGATTTAAAAGTGAAAGGAGCAGAG R I D C K C A L L E N D D L K V K G A E E S I A S A L C W K T T I - K - K E Q R E N R L Q V R F V G K R R F K S E R S R . . . . . . 122943 GTGTGTGTGGCGGTGGAAGGACGCACCGCCGCGCCGCCGGAAGTGATTACTGAGAAGGTG V C V A V E G R T A A P P E V I T E K V C V W R W K D A P P R R R K - L L R R W G V C G G G R T H R R A A G S D Y - E G . . . . . . 122883 GAGATGACGGTGAGATCACGGCGGAGGAGCTGTTTTCAGAAGCTGGAGGAGATTCCTGAA E M T V R S R R R S C F Q K L E E I P E R - R - D H G G G A V F R S W R R F L N G D D G E I T A E E L F S E A G G D S - . . . . . . 122823 CAAAGAGAAGTTGAAAATGACGAGTCTACTTGTTGCTGCTCGGAGTGTGAAGGTGAAGAA Q R E V E N D E S T C C C S E C E G E E K E K L K M T S L L V A A R S V K V K K T K R S - K - R V Y L L L L G V - R - R . . . . . . 122763 GACGATTCGGACGACACCGATACGGCGGAGGGAGTTGGGTGGGCAGTAGATGTAGGGATA D D S D D T D T A E G V G W A V D V G I T I R T T P I R R R E L G G Q - M - G Y R R F G R H R Y G G G S W V G S R C R D . . . . . . 122703 TGGGTGATGTGCCTTGGGGTGGGGGTGGGCTATTTGGTCTCTAGAGCTTCTTCAAAGAGC W V M C L G V G V G Y L V S R A S S K S G - C A L G W G W A I W S L E L L Q R A M G D V P W G G G G L F G L - S F F K E . . . . . . 122643 TTAAGGAGGAGGAGGAGATTCCTATAAAAAAACTCATTGTTTTGGTTAAATAATCCTGCG L R R R R R F L - K N S L F W L N N P A - G G G G D S Y K K T H C F G - I I L R L K E E E E I P I K K L I V L V K - S C . . . . . . 122583 TAGACATTTTTTCCACCACTTATACCTTATAATTTTATTATTCTGCTAGTAATTTCTAAC - T F F P P L I P Y N F I I L L V I S N R H F F H H L Y L I I L L F C - - F L T V D I F S T T Y T L - F Y Y S A S N F - . . . . . . 122523 AAATAGGATATAGAAAGTTTTGTTTTCTGCAAAGTATTACATTTAGGCTCGTTTAATCCA K - D I E S F V F C K V L H L G S F N P N R I - K V L F S A K Y Y I - A R L I Q Q I G Y R K F C F L Q S I T F R L V - S . . . 122463 AAAATAAATTATTCTAGAATTGTT K I N Y S R I V K - I I L E L K N K L F - N C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-17_AGS-1_PPS_1 (123363 122617) (frame '1'; 744 bp, 248 residues) 1 SNQLAKMCKG FQPNEKDRLK IKGFYLHLSP TETVSPDSLT LHYLPRISES PLEINDSKIR 61 SNSPGFVTLY RVVSADNVTT KGVIYGSRDR VKASEGVKFE IFMADVKLIK GIFMKDLHNW 121 RIDCKCALLE NDDLKVKGAE VCVAVEGRTA APPEVITEKV EMTVRSRRRS CFQKLEEIPE 181 QREVENDEST CCCSECEGEE DDSDDTDTAE GVGWAVDVGI WVMCLGVGVG YLVSRASSKS 241 LRRRRRFL- 3-phase translation of AGS-1 (+strand): . . . . . . 122440 AACAATTCTAGAATAATTTATTTTTGGATTAAACGAGCCTAAATGTAATACTTTGCAGAA N N S R I I Y F W I K R A - M - Y F A E T I L E - F I F G L N E P K C N T L Q K Q F - N N L F L D - T S L N V I L C R . . . . . . 122500 AACAAAACTTTCTATATCCTATTTGTTAGAAATTACTAGCAGAATAATAAAATTATAAGG N K T F Y I L F V R N Y - Q N N K I I R T K L S I S Y L L E I T S R I I K L - G K Q N F L Y P I C - K L L A E - - N Y K . . . . . . 122560 TATAAGTGGTGGAAAAAATGTCTACGCAGGATTATTTAACCAAAACAATGAGTTTTTTTA Y K W W K K C L R R I I - P K Q - V F L I S G G K N V Y A G L F N Q N N E F F Y V - V V E K M S T Q D Y L T K T M S F F . . . . . . 122620 TAGGAATCTCCTCCTCCTCCTTAAGCTCTTTGAAGAAGCTCTAGAGACCAAATAGCCCAC - E S P P P P - A L - R S S R D Q I A H R N L L L L L K L F E E A L E T K - P T I G I S S S S L S S L K K L - R P N S P . . . . . . 122680 CCCCACCCCAAGGCACATCACCCATATCCCTACATCTACTGCCCACCCAACTCCCTCCGC P H P K A H H P Y P Y I Y C P P N S L R P T P R H I T H I P T S T A H P T P S A P P P Q G T S P I S L H L L P T Q L P P . . . . . . 122740 CGTATCGGTGTCGTCCGAATCGTCTTCTTCACCTTCACACTCCGAGCAGCAACAAGTAGA R I G V V R I V F F T F T L R A A T S R V S V S S E S S S S P S H S E Q Q Q V D P Y R C R P N R L L H L H T P S S N K - . . . . . . 122800 CTCGTCATTTTCAACTTCTCTTTGTTCAGGAATCTCCTCCAGCTTCTGAAAACAGCTCCT L V I F N F S L F R N L L Q L L K T A P S S F S T S L C S G I S S S F - K Q L L T R H F Q L L F V Q E S P P A S E N S S . . . . . . 122860 CCGCCGTGATCTCACCGTCATCTCCACCTTCTCAGTAATCACTTCCGGCGGCGCGGCGGT P P - S H R H L H L L S N H F R R R G G R R D L T V I S T F S V I T S G G A A V S A V I S P S S P P S Q - S L P A A R R . . . . . . 122920 GCGTCCTTCCACCGCCACACACACCTCTGCTCCTTTCACTTTTAAATCGTCGTTTTCCAA A S F H R H T H L C S F H F - I V V F Q R P S T A T H T S A P F T F K S S F S N C V L P P P H T P L L L S L L N R R F P . . . . . . 122980 CAAAGCGCACTTGCAATCGATTCTCCAGTTGTGTAGATCTTTCATGAAAATACCTTTTAT Q S A L A I D S P V V - I F H E N T F Y K A H L Q S I L Q L C R S F M K I P F M T K R T C N R F S S C V D L S - K Y L L . . . . . . 123040 GAGCTTTACATCAGCCATGAATATTTCAAATTTTACTCCTTCACTGGCTTTAACTCTGTC E L Y I S H E Y F K F Y S F T G F N S V S F T S A M N I S N F T P S L A L T L S - A L H Q P - I F Q I L L L H W L - L C . . . . . . 123100 CCTGCTTCCGTAAATAACACCTTTCGTTGTTACATTGTCAGCTGATACTACCCGGTAAAG P A S V N N T F R C Y I V S - Y Y P V K L L P - I T P F V V T L S A D T T R - S P C F R K - H L S L L H C Q L I L P G K . . . . . . 123160 CGTAACGAAACCGGGGGAATTGGATCGGATTTTGGAATCATTAATCTCTAATGGACTCTC R N E T G G I G S D F G I I N L - W T L V T K P G E L D R I L E S L I S N G L S A - R N R G N W I G F W N H - S L M D S . . . . . . 123220 ACTAATTCTAGGGAGATAATGCAGAGTTAGAGAATCCGGTGAGACGGTTTCAGTCGGTGA T N S R E I M Q S - R I R - D G F S R - L I L G R - C R V R E S G E T V S V G D H - F - G D N A E L E N P V R R F Q S V . . . . . . 123280 TAAATGGAGATAAAAGCCTTTGATTTTCAGGCGATCTTTCTCGTTTGGTTGAAATCCTTT - M E I K A F D F Q A I F L V W L K S F K W R - K P L I F R R S F S F G - N P L I N G D K S L - F S G D L S R L V E I L . . . 123340 ACACATTTTTGCTAGTTGATTGGA T H F C - L I G H I F A S - L Y T F L L V D W Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-17_AGS-1_PPS_1 (122849 123112) (frame '2'; 261 bp, 87 residues) 1 KQLLRRDLTV ISTFSVITSG GAAVRPSTAT HTSAPFTFKS SFSNKAHLQS ILQLCRSFMK 61 IPFMSFTSAM NISNFTPSLA LTLSLLP- >C08SLm0006K11.1+_PGL-17_AGS-1_PPS_2 (122653 122868) (frame '1'; 213 bp, 71 residues) 1 RSSRDQIAHP HPKAHHPYPY IYCPPNSLRR IGVVRIVFFT FTLRAATSRL VIFNFSLFRN 61 LLQLLKTAPP P- ... finished at: Mon Aug 21 22:04:38 2006