GeneSeqer. Version of March 12, 2006. Date run: Thu Aug 24 08:01:35 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-nEBTa/C08SLm0119I05/C08SLm0119I05.seq.screen ________________________________________________________________________________ Sequence 1: C08SLm0119I05.1, from 1 to 100127, both strands analyzed. ... started at: Thu Aug 24 08:24:42 2006 EST library file: /tmp/cxgn-bacpublish-resources-hUXHpV/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 76 EST library file: /tmp/cxgn-bacpublish-resources-hUXHpV/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 7 HitsTableSize = 51 ******************************************************************************** EST sequence 31 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 1 to 3648): Exon 1 680 1407 ( 728 n); cDNA 1 721 ( 721 n); score: 0.696 MATCH C08SLm0119I05.1+ SGN-E351546+ 0.696 728 0.999 C PGS_C08SLm0119I05.1+_SGN-E351546+ (680 1407) Alignment (genomic DNA sequence = upper lines): TTGACCGATG ATACTTACTC AGTACATGTT TCCTCGTACT GAGCCCTACT TGTTTTCTTC 739 ||| |||||| ||| ||||| |||| || | | ||||| || ||||||| | | | || TTGGCCGATG ATATCTACTC AGTAGCCGTG T-TTTGTACT GACCCCTACT TTTATGTTTT 59 TTTGTTTTCC TTTTATGAAA TGCAGCGATT GTACCTATGA CTTCTGATTT TCCTCAGCTC 799 | | || ||| || | |||||| | || || |||| | | | ||| TCTTCTTGGT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGCCT CCCGCATATC -AAGTTACAG GGTGAGCTAT CCATTCAAGC TCGTATTGGA 858 |||||| || | || | | | | ||| ||||||||| | ||| ||| | | | |||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 GTCTCTCGGT CATGACATGA TGTCCTATAC TTTCGG-ACA CA-TACCATT TTATTCTTTA 916 |||| | |||| | ||| || | | || || ||| | | || | | |||| | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGTGTA TTCGATATTC TTAGACTTAG TATTGGAGAT TAGATGTCCT TGATGTGATG 976 |||||| | || || | || ||||| |||| || | | | ||||||| || || ||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTATCAGAT TTTGGG-ATG ATAAGTATTA AACTTTAGAA ACTTATTTAA ATTGGTTGCT 1035 ||| ||| | |||||| || ||| | || || ||| | ||| || ||| || | ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAG-T AGTTA-TT-G ATT--TT-AT 353 TAGTATCTTT TGAAGCTTCC ACATTATTGA TATTATTTAT AGTTGAACTA TTGATACATG 1095 || | || | | ||||| ||||| | | | || | | || || | |||| | ||| TAAT-GAGTT TAAGTCTTCC GCATTACT-- TTCTGTTGCT A-TT--AC-A TTGA-A-ATG 404 TTGGGGTTTA GATGTGTTGG TTCGCCCACT TAAGGAGGTA AGTGTGGGTG CCACTCACGA 1155 || |||||| ||| ||||| ||||| ||| || | |||| |||||||||| ||| | || TTAAGGTTTA GATTGGTTGG TTCGCTCACA TAGGAGGGTA AGTGTGGGTG CCAGTGGCGG 464 ATC-ATTTTG GGTCGTGAC- AAACTTGGTA TCAGAGCGTT AGGTTTGTTG ATCTCATCAC 1213 | |||| ||||||||| |||||||||| ||||||| || ||||| |||| ||||||||| CCCGGATTTG GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC 524 ACAAGAACAA GTCTAGTAGA GTCTTGCGGA ATGGTAAGGG GACGCCTTTA CTTTTCTTCG 1273 |||||||||| |||||||||| ||||| ||| | |||| ||| ||||| |||| |||||| | | ACAAGAACAA GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCTTTTA CTTTTCCTTG 584 AGAAGCTATA GGACTTTAGG AAAGC-TCA- --TTTCTTTC TTTCTTTCGT GCTACTACTT 1329 ||| |||||| ||||||||| ||| | ||| |||| ||| |||||||||| |||||||||| AGAGGCTATA AGACTTTAGG AAAACTTCAC TCTTTCATTC TTTCTTTCGT GCTACTACTT 644 GAATCCAATT GGTATATAGG TGATACAAAT TGGTATCTGA ACTTCTTCAC TCTATTTCAA 1389 | ||||| ||||| || | ||||| ||| |||||||||| | | |||| ||| || | CGAGTCAATT GGTATCTAAG CGATACGAAT TGGTATCTGA CCATNCTCAC TCTCTTGC-C 703 ATATGGGTAA TACTAGAG 1407 | ||||||| ||||||| AGATGGGTAG AACTAGAG 721 hqPGS_C08SLm0119I05.1+_SGN-E351546+ (680 1407) ******************************************************************************** EST sequence 50 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 1 to 2908): Exon 1 680 1340 ( 661 n); cDNA 1 655 ( 655 n); score: 0.693 MATCH C08SLm0119I05.1+ SGN-E356696+ 0.693 661 1.009 C PGS_C08SLm0119I05.1+_SGN-E356696+ (680 1340) Alignment (genomic DNA sequence = upper lines): TTGACCGATG ATACTTACTC AGTACATGTT TCCTCGTACT GAGCCCTACT TGTTTTCTTC 739 ||| |||||| ||| ||||| |||| || | | ||||| || ||||||| | | | || TTGGCCGATG ATATCTACTC AGTAGCCGTG T-TTTGTACT GACCCCTACT TTTATGTTTT 59 TTTGTTTTCC TTTTATGAAA TGCAGCGATT GTACCTATGA CTTCTGATTT TCCTCAGCTC 799 | | || ||| || | |||||| | || || |||| | | | ||| TCTTCTTGTT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGCCT CCCGCATATC -AAGTTACAG GGTGAGCTAT CCATTCAAGC TCGTATTGGA 858 |||||| || | || | | | | ||| ||||||||| | ||| ||| | | | |||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 GTCTCTCGGT CATGACATGA TGTCCTATAC TTTCGG-ACA CA-TACCATT TTATTCTTTA 916 |||| | |||| | ||| || | | || || ||| | | || | | |||| | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGTGTA TTCGATATTC TTAGACTTAG TATTGGAGAT TAGATGTCCT TGATGTGATG 976 |||||| | || || | || ||||| |||| || | | | ||||||| || || ||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTATCAGAT TTTGGG-ATG ATAAGTATTA AACTTTAGAA ACTTATTTAA ATTGGTTGCT 1035 ||| ||| | |||||| || ||| | || || ||| | ||| || ||| || | ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAG-T AGTTA-TT-G ATT--TT-AT 353 TAGTATCTTT TGAAGCTTCC ACATTATTGA TATTATTTAT AGTTGAACTA TTGATACATG 1095 || | || | | ||||| ||||| | | | || | | || || | |||| | ||| TAAT-GAGTT TAAGTCTTCC GCATTACT-- TTCTGTTGCT A-TT--AC-A TTGA-A-ATG 404 TTGGGGTTTA GATGTGTTGG TTCGCCCACT TAAGGAGGTA AGTGTGGGTG CCACTCACGA 1155 || |||||| ||| ||||| ||||| ||| || | |||| |||||||||| ||| | || TTAAGGTTTA GATTGGTTGG TTCGCTCACA TANGAGGGTA AGTGTGGGTG CCAGTGGCGG 464 ATC-ATTTTG GGTCGTGAC- AAACTTGGTA TCAGAGCGTT AGGTTTGTTG ATCTCATCAC 1213 | |||| ||||||||| |||||||||| ||||||| || ||||| |||| ||||||||| CCCGGATTTG GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC 524 ACAAGAACAA GTCTAGTAGA GTCTTGCGGA ATGGTAAGGG GACGCCTTTA CTTTTCTTCG 1273 |||||||||| |||||||||| ||||| ||| | |||| ||| ||||| |||| |||||| | | ACAAGAACAA GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCTTTTA CTTTTCCTTG 584 AGAAGCTATA GGACTTTAGG AAAGC-TCA- --TTTCTTTC TTTCTTTCGT GCTACTACTT 1329 ||| |||||| ||||||||| ||| | ||| |||| ||| |||||||||| |||||||||| AGAGGCTATA AGACTTTAGG AAAACTTCAC TCTTTCATTC TTTCTTTCGT GCTACTACTT 644 GAATCCAATT G 1340 || ||||||| | GAGTCCAATT G 655 hqPGS_C08SLm0119I05.1+_SGN-E356696+ (680 1340) ******************************************************************************** EST sequence 49 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 1 to 2158): Exon 1 680 1269 ( 590 n); cDNA 1 580 ( 580 n); score: 0.681 MATCH C08SLm0119I05.1+ SGN-E356206+ 0.681 590 1.017 C PGS_C08SLm0119I05.1+_SGN-E356206+ (680 1269) Alignment (genomic DNA sequence = upper lines): TTGACCGATG ATACTTACTC AGTACATGTT TCCTCGTACT GAGCCCTACT TGTTTTCTTC 739 ||| |||||| ||| ||||| |||| || | | ||||| || ||||||| | | | || TTGGCCGATG ATATCTACTC AGTAGCCGTG T-TTTGTACT GACCCCTACT TTTATGTTTT 59 TTTGTTTTCC TTTTATGAAA TGCAGCGATT GTACCTATGA CTTCTGATTT TCCTCAGCTC 799 | | || ||| || | |||||| | || || |||| | | | ||| TCTTCTTGTT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGCCT CCCGCATATC -AAGTTACAG GGTGAGCTAT CCATTCAAGC TCGTATTGGA 858 |||||| || | || | | | | ||| ||||||||| | ||| ||| | | | |||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 GTCTCTCGGT CATGACATGA TGTCCTATAC TTTCGG-ACA CA-TACCATT TTATTCTTTA 916 |||| | |||| | ||| || | | || || ||| | | || | | |||| | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGTGTA TTCGATATTC TTAGACTTAG TATTGGAGAT TAGATGTCCT TGATGTGATG 976 |||||| | || || | || ||||| |||| || | | | ||||||| || || ||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTATCAGAT TTTGGG-ATG ATAAGTATTA AACTTTAGAA ACTTATTTAA ATTGGTTGCT 1035 ||| ||| | |||||| || ||| | || || ||| | ||| || ||| || | ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAG-T AGTTA-TT-G ATT--TT-AT 353 TAGTATCTTT TGAAGCTTCC ACATTATTGA TATTATTTAT AGTTGAACTA TTGATACATG 1095 || | || | | ||||| ||||| | | | || | | || || | |||| | ||| TAAT-GAGTT TAAGTCTTCC GCATTACT-- TTCTGTTGCT A-TT--AC-A TTGA-A-ATG 404 TTGGGGTTTA GATGTGTTGG TTCGCCCACT TAAGGAGGTA AGTGTGGGTG CCACTCACGA 1155 || |||||| ||| ||||| ||||| ||| || | |||| |||||||||| ||| | || TTAAGGTTTA GATTGGTTGG TTCGCTCACA TAGGAGGGTA AGTGTGGGTG CCAGTGGCGG 464 ATC-ATTTTG GGTCGTGAC- AAACTTGGTA TCAGAGCGTT AGGTTTGTTG ATCTCATCAC 1213 | |||| ||||||||| |||||||||| ||||||| || ||| | |||| ||||||||| CCCGGATTTG GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGGTCGTTG GTCTCATCAC 524 ACAAGAACAA GTCTAGTAGA GTCTTGCGGA ATGGTAAGGG GACGCCTTTA CTTTTC 1269 |||||||||| |||||||||| ||||| || | |||| ||| ||||| |||| |||||| ACAAGAACAA GTCTAGTAGA GTCTTAAGGG ACGGTANGGG GACGCTTTTA CTTTTC 580 hqPGS_C08SLm0119I05.1+_SGN-E356206+ (680 1269) ******************************************************************************** EST sequence 54 +strand 307 n (File: SGN-E345139+) 1 CATCGAAGGC AGCAACCTCA GCGAGTGTAC CTATGACTTC TGATTTCCCT TAGCTCTAGC 61 CAGCCTCCCG CATATCAAGT TACAGGGTGA GCTATCCGTT CAAGCTCGTG TTGGATTCTC 121 TCGGTCATGA CATGATGTCC TATAGTTTCG GACACATACT ATTTTATTCT TTATTTTAGT 181 GTATTCGATA TTCTTAGACT TAGTAATGGA GATTAGATGT CTTTGATGTG ATGACTATCA 241 GATTTTTGGA TAATAAGTAT TAAACTTTAG AAACTTATTT AAATTGGTTA CTTAGTAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 1 to 1822): Exon 1 765 1037 ( 273 n); cDNA 22 294 ( 273 n); score: 0.952 PPA cDNA 297 307 MATCH C08SLm0119I05.1+ SGN-E345139+ 0.952 273 0.889 C PGS_C08SLm0119I05.1+_SGN-E345139+ (765 1037) Alignment (genomic DNA sequence = upper lines): CGATTGTACC TATGACTTCT GATTTTCCTC AGCTCTAGCC AGCCTCCCGC ATATCAAGTT 824 ||| |||||| |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| CGAGTGTACC TATGACTTCT GATTTCCCTT AGCTCTAGCC AGCCTCCCGC ATATCAAGTT 81 ACAGGGTGAG CTATCCATTC AAGCTCGTAT TGGAGTCTCT CGGTCATGAC ATGATGTCCT 884 |||||||||| |||||| ||| |||||||| | |||| ||||| |||||||||| |||||||||| ACAGGGTGAG CTATCCGTTC AAGCTCGTGT TGGATTCTCT CGGTCATGAC ATGATGTCCT 141 ATACTTTCGG ACACATACCA TTTTATTCTT TATTTTAGTG TATTCGATAT TCTTAGACTT 944 ||| |||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATAGTTTCGG ACACATACTA TTTTATTCTT TATTTTAGTG TATTCGATAT TCTTAGACTT 201 AGTATTGGAG ATTAGATGTC CTTGATGTGA TGACTATCAG ATTTTGGGAT GATAAGTATT 1004 |||| ||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||||||||| AGTAATGGAG ATTAGATGTC TTTGATGTGA TGACTATCAG ATTTTTGGAT AATAAGTATT 261 AAACTTTAGA AACTTATTTA AATTGGTTGC TTA 1037 |||||||||| |||||||||| |||||||| | ||| AAACTTTAGA AACTTATTTA AATTGGTTAC TTA 294 hqPGS_C08SLm0119I05.1+_SGN-E345139+ (765 1037) ******************************************************************************** EST sequence 107 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 1 to 4238): Exon 1 827 1406 ( 580 n); cDNA 66 637 ( 572 n); score: 0.747 MATCH C08SLm0119I05.1+ SGN-E392027- 0.747 580 0.817 C PGS_C08SLm0119I05.1+_SGN-E392027- (827 1406) Alignment (genomic DNA sequence = upper lines): AGGGTGAGCT ATCCATTCAA GCTCGTATTG GAGTCTCTCG GTCATGACAT GATGTCCTAT 886 |||||||||| | ||| | ||| | | || || ||| ||| | | | |||| | | AGGGTGAGCT AATGCTTCTA GCTTGGACTG GATCTTCTTC TTCAAGTCTT GATGCCTTGA 125 ACTTTCGGAC ACATACCATT TTATTCTTTA TTTTAGTGTA TTCGA-TATT CTTAGACTTA 945 |||| ||| | | || | || || | || |||| | || || || | ||||| ||| ACTTCCGG-C ATGGACTAGC TTCTTATGTA TTTTTAGCTT TTAGACTACT CTTAG-TTTA 183 GT-ATTGGAG ATTAGATGTC CTTGATGTGA TGACTATCAG ATTTT-GGG- ATGATAAGTA 1002 || ||| || ||||||| |||| |||| ||||| ||| ||||| ||| || ||| | GTCATTTGAT CGTAGATGTT CTTGTGGTGA TGACTTCCAG ATTTTGGGGA ATAATAGATG 243 TTAAACTTTA GAAACTTATT TAAATTGGT- TGCTTAGTAT CTTTTGAAG- CTTCCACATT 1060 || || |||| ||| ||| | || ||||| || | || || ||| |||||||||| TTGAATTTTA GAAG-TTAAT GAA-TTGGTC TGTATTTAAT GAGTTTAAGT CTTCCACATT 301 ATTGATATTA TTTATAGTTG AACTATTGAT ACATGTTGGG GTTTAGATGT GTTGGTTCGC 1120 | | | | || ||| || | |||||| | ||||| | | |||||| |||||||||| ACT--TTCTG TTGATA-TT- A--TATTGA- A-ATGTTAAG G-TTAGATTG GTTGGTTCGC 352 CCACTTAAGG AGGTAAGTGT GGGTGCCACT CACGAATCAT TTTGGGTCGT GACAAACTTG 1180 ||| || | ||||||||| |||||||| | | | | | ||| |||||| |||||||||| TCACATAGGA GGGTAAGTGT GGGTGCCAGT CGCAACCCGG TTTTGGTCGT GACAAACTTG 412 GTATCAGAGC GTTAGGTTTG TTGATCTCAT CACACAAGAA CAAGTCTAGT AGAGTCTTGC 1240 |||||||||| ||||||| | ||| |||||| |||||||||| | |||||||| |||||||| GTATCAGAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA CGAGTCTAGT AGAGTCTTAA 472 GGAATGGTAA GGGGACGCCT TTACTTTTCT TCGAGAAGCT ATAGGACTTT AGGAAAGCTC 1300 |||| |||| ||||| |||| ||||||||| | |||| ||| ||| |||||| ||||| || GGAACGGTAG GGGGATGCCT TTACTTTTCC TTGAGAGGCT ATAAGACTTT TGGAAAATTC 532 ATTTCTTTCT TTCTTTCGTG CTACTACTTG AATCCAATTG GTATATAGGT GATACAAATT 1360 ||||||| |||||||||| ||| |||||| |||||||| |||| ||||| |||||||||| CATTCTTTC- TTCTTTCGTG CTATTACTTG GGTCCAATTG GTATCTAGGT GATACAAATT 591 GGTATCTGAA CTTCTTCACT CTATTTCAAA TATGGGTAAT ACTAGA 1406 ||||||||| | |||||||| ||||||| | |||| || |||||| GGTATCTGAC CATCTTCACT CTATTTCGCA GATGGTTAGA ACTAGA 637 hqPGS_C08SLm0119I05.1+_SGN-E392027- (827 1406) ******************************************************************************** EST sequence 53 +strand 307 n (File: SGN-E345139+) 1 CATCGAAGGC AGCAACCTCA GCGAGTGTAC CTATGACTTC TGATTTCCCT TAGCTCTAGC 61 CAGCCTCCCG CATATCAAGT TACAGGGTGA GCTATCCGTT CAAGCTCGTG TTGGATTCTC 121 TCGGTCATGA CATGATGTCC TATAGTTTCG GACACATACT ATTTTATTCT TTATTTTAGT 181 GTATTCGATA TTCTTAGACT TAGTAATGGA GATTAGATGT CTTTGATGTG ATGACTATCA 241 GATTTTTGGA TAATAAGTAT TAAACTTTAG AAACTTATTT AAATTGGTTA CTTAGTAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 5641 to 7562): Exon 1 6505 6777 ( 273 n); cDNA 22 294 ( 273 n); score: 0.949 PPA cDNA 297 307 MATCH C08SLm0119I05.1+ SGN-E345139+ 0.949 273 0.889 C PGS_C08SLm0119I05.1+_SGN-E345139+ (6505 6777) Alignment (genomic DNA sequence = upper lines): CGATTATACC TATGACTTCT GATTTCCCTC AGCTCTAGCC AGCCTCCCGC ATATCAAGTT 6564 ||| | |||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CGAGTGTACC TATGACTTCT GATTTCCCTT AGCTCTAGCC AGCCTCCCGC ATATCAAGTT 81 ACAAGGTGAG CTATCCATTC AAGCTCGTGT TGGATTCTCT CGGTCATGAC ATGATGTCCT 6624 ||| |||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGTGAG CTATCCGTTC AAGCTCGTGT TGGATTCTCT CGGTCATGAC ATGATGTCCT 141 ATACTTTCGG ACACATACCA TTTTATTCTT TATTTTAGTG TATTCGATAT TCTTAGACTT 6684 ||| |||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATAGTTTCGG ACACATACTA TTTTATTCTT TATTTTAGTG TATTCGATAT TCTTAGACTT 201 AGTATTGAAT ATTAGATGTC CTTGATGTGA TGACTATCAG ATTTTGGGAT GATAAGTATT 6744 |||| || | |||||||||| ||||||||| |||||||||| ||||| |||| ||||||||| AGTAATGGAG ATTAGATGTC TTTGATGTGA TGACTATCAG ATTTTTGGAT AATAAGTATT 261 AAACTTTAGA AACTTATTTA AATTGGTTGC TTA 6777 |||||||||| |||||||||| |||||||| | ||| AAACTTTAGA AACTTATTTA AATTGGTTAC TTA 294 hqPGS_C08SLm0119I05.1+_SGN-E345139+ (6505 6777) ******************************************************************************** EST sequence 33 +strand 805 n (File: SGN-E352005+) 1 TTTTGTCGTA AAAATGTGGC AAACCTACAC GTAGAGAAGT CCTCAAGAAA ACGTAAAAAA 61 TATTCTTGGC TACTTCAAGT TTTGTCTGCA AACATCGGCA AGCTTCTATG TCGACAAGCC 121 TCAAAGTAAT GGGCACTTGT TGACACATAA ATTTTATTGG ATCAAATTCA TATATCATTT 181 GAATTAAATC CATGTTCATT AGGCTGAATA AGTAATTTGG GCTTTACAAA TAAATAATTT 241 CATCTTATTA AATTCAAATC CAAGGTTCAT TTCACGTTGA AGTCCAAACC CATGCAACGA 301 GTCACATTGA CTAAGAATTC AAGACCTACA AGGTGACGCC ACGTGTCCAA ATGAGGTGGT 361 AGTCCCTGTC AAATACAAGA ACGAATCGAA ATGTTTCAAG TGTCAAAATG ACATTATCTG 421 GCCGATCGCA AGCAACCTTG TCCACTCCCT ACAACTATAA ACAGGGGATA GACATGACAT 481 TCAAGGGGAT CCTGAATACT CTTCAACAAG CATTCAACAA ATTGGAGAAA GCTACAACAT 541 CAACATCAAT AGTTCTTCGA AGGGCTGATC AACGGAGTTC TACACGGAGA TCGACTTAAA 601 ATGACGAAGC GCTTTTCGAC GTTCTAGAGA TCGACAAAAT CTCAAAGAGG TCTACATCTT 661 ATAACAATTC GAGAAATACG CTACTAAAGG CCCTCGAATC ACGGAGAAAC TTANGAGAGA 721 GAATCAGGAG AACCAGGAAT TGTACTCACA ATGATTCATT AATAAAATCA TTTCTGGTAT 781 TTATTTTGCT TGCAGTTAAT TTTCA Predicted gene structure (within gDNA segment 4558 to 10284): Exon 1 8857 9326 ( 470 n); cDNA 138 608 ( 471 n); score: 0.794 Intron 1 9327 9454 ( 128 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.86) Exon 2 9455 9654 ( 200 n); cDNA 609 803 ( 195 n); score: 0.805 MATCH C08SLm0119I05.1+ SGN-E352005+ 0.797 670 0.832 C PGS_C08SLm0119I05.1+_SGN-E352005+ (8857 9326,9455 9654) Alignment (genomic DNA sequence = upper lines): TGTAGACACA CAAATTTTAT TGGATTTAAT TTATATAAAA TTTGGATTAA ATCCATGTAG 8916 ||| |||||| ||||||||| ||||| ||| | ||||| | |||| ||||| |||||||| TGTTGACACA TAAATTTTAT TGGATCAAAT TCATATATCA TTTGAATTAA ATCCATGTTC 197 ATTTGGGTTG AATGATTAAT TTGAGCTTTA CAAATAAATA AGTCAATGTC TATTAAATTC 8976 | || || || ||| | |||| ||| |||||| |||||||||| | | || | |||||||||| A-TTAGGCTG AATAAGTAAT TTGGGCTTTA CAAATAAATA ATTTCATCT- TATTAAATTC 255 AAGTCCAAGG TCCATTTTCA CCTTGAAG-C CAAACTCATG CCACGTGTCA CAGTGACTAG 9035 || ||||||| | || ||||| | |||||| | ||||| |||| | ||| |||| || |||||| AAATCCAAGG TTCA-TTTCA CGTTGAAGTC CAAACCCATG CAACGAGTCA CATTGACTAA 314 ACATCAAAGA CCTACAAGGT GACGCCACGT GTCCGAATGT GGTGGTATCA CCAATCAAAT 9095 || |||| |||||||||| |||||||||| |||| |||| ||||||| || |||||| GAATTCAAGA CCTACAAGGT GACGCCACGT GTCCAAATGA GGTGGTAGTC CCTGTCAAAT 374 GATAGAAGGA ATCACAATGC GCCAAGTGTC AAAATGACAT CCTTTGGCCA ATCACAAGCA 9155 |||| || ||| |||| |||||||| |||||||||| | ||||| ||| |||||| ACAAGAACGA ATCGAAATGT TTCAAGTGTC AAAATGACAT TATCTGGCCG ATCGCAAGCA 434 ACCTTGTCCA C-CCCTACAA CTATAAATAG GGGATGAATA TGACATTCAA AGTCATGAAC 9214 |||||||||| | |||||||| ||||||| || ||||| | | |||||||||| | || ACCTTGTCCA CTCCCTACAA CTATAAACAG GGGATAGACA TGACATTCAA GGGGATCCTG 494 AAAACACTTC AACAAGCATT TTGC-AATTG GAGAAAGATA CAACATCAAC -TACATATCT 9272 || || |||| |||||||||| | ||||| ||||||| || |||||||||| | ||| | AATACTCTTC AACAAGCATT CAACAAATTG GAGAAAGCTA CAACATCAAC ATCAATAGTT 554 CTTCGAAGGA GTGATCAACA GAGCTCTTCC TGGAGATCGA CTTGCAGCGA CGAAGTGCTT 9332 ||||||||| |||||||| ||| ||| | ||||||||| ||| | || |||| CTTCGAAGGG CTGATCAACG GAGTTCTACA CGGAGATCGA CTTAAAATGA CGAA...... 608 TCCGATGTTC TCGGAGAACA AATACATCTC AAGGAGGTCT ACATATGCTA CAAAATCAAC 9392 .......... .......... .......... .......... .......... .......... 608 TACATAGATT TTCAAAGGAT TGATTAACGG AGTTCTCCCA GGGATAAACT TGCAACGACT 9452 .......... .......... .......... .......... .......... .......... 608 AAGTGCTTTT CGACGTTCCT AGAGATCAAA TACATCTCAA GGAGGTCTAC ATCATCCTA- 9511 | |||||| ||||||| || ||||||| | | ||||||| ||||||||| ||| | | ..GCGCTTTT CGACGTT-CT AGAGATCGAC AAAATCTCAA AGAGGTCTAC ATCTTATAAC 665 TATTTAAGAA ATACACTACT GAAGGCCCTC AAATTATGGA GAAACTTAGG AGAGAAGAAT 9571 ||| |||| |||| ||||| ||||||||| ||| | ||| |||||||| | |||| ||||| AATTCGAGAA ATACGCTACT AAAGGCCCTC GAATCACGGA GAAACTTANG AGAG-AGAAT 724 CAAGAGAACA ATAGAATTGT ACTCAC-ACG ATTCATTAAT AAAATCTGTC TTTTCTATTA 9630 || |||||| | ||||||| |||||| | | |||||||||| |||| || ||||| || CAGGAGAACC A-GGAATTGT ACTCACAATG ATTCATTAAT AAAA----TC ATTTCTGGTA 779 TTTGTTTTGC TTGCAGTTAA TTTT 9654 ||| |||||| |||||||||| |||| TTTATTTTGC TTGCAGTTAA TTTT 803 hqPGS_C08SLm0119I05.1+_SGN-E352005+ (8857 9326,9455 9654) ******************************************************************************** EST sequence 23 -strand 465 n (File: SGN-E226388-) 1 CATATGATGA TTAAATCGTG ATGTTCATGA ACAAGAAAAT AAAAGTAAAT TCCTTAACGA 61 ATTGTTTAAA AGTTTATGTA AAACTCTAAG CCAAAACGCC TAAGCTAAAT GCAAAGAAAG 121 TGAAGTAAAG GCATATGTTA ATAGAGTATA GTTTCGGCTA TTCTCTTGTA AAAATGAAGA 181 AAAGTATATG CTGTCATTGA GGGTAGAACT CGAGACCTTA AGGTCCTAAT ATTAAGAGAT 241 AAAGCCTTAA AATAAAGGAG AAAAATAAAT GTGTTGAGTG GGGATTGAAC CCATAACCTC 301 TTGAATAGAT GAAAGAGTTA GGAGAAAAAA AAATCTTGTG AGTGGGGATT GAACCCACAA 361 CCTCTTGAAT GGATGAGAAA TTAACGAGAA AAATAAATGT GATGAGTGGG GATTGAACCC 421 ACAACCTCTT TAATAGATGA GAGAGTTAGG AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 28498 to 24070): Exon 1 24953 24872 ( 82 n); cDNA 249 330 ( 82 n); score: 0.915 Intron 1 24871 24789 ( 83 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 2 24788 24656 ( 133 n); cDNA 331 463 ( 133 n); score: 0.850 MATCH C08SLm0119I05.1- SGN-E226388- 0.874 215 0.462 C PGS_C08SLm0119I05.1-_SGN-E226388- (24953 24872,24788 24656) Alignment (genomic DNA sequence = upper lines): AAAATAAAGG ATAAAAATAT ATGTGGTGAG TGGGGATTGA ATCCACAACC TCTTGAATAG 24894 |||||||||| | ||||||| ||||| |||| |||||||||| | ||| |||| |||||||||| AAAATAAAGG AGAAAAATAA ATGTGTTGAG TGGGGATTGA ACCCATAACC TCTTGAATAG 308 ATGAGAGAGC TAGGAGAAAA AATAAATTAA TGTGGTGAGT GGGGATTGAA CCCACAACCT 24834 |||| |||| |||||||||| || ATGAAAGAGT TAGGAGAAAA AA........ .......... .......... .......... 330 CTTGAATAGA TGAGAGAGTT AGGAGAAAAA ATAAAGAAGA AAAATAAATG TGGTGAGTGG 24774 |||| | |||||||| .......... .......... .......... .......... .....AAATC TTGTGAGTGG 345 GGATTGAACC CACAACCTCT TGAAGAGATG AGAGACTTAG GAGAAAAATA AATGTGGTGA 24714 |||||||||| |||||||||| |||| |||| ||| | | | |||||||||| |||||| ||| GGATTGAACC CACAACCTCT TGAATGGATG AGAAATTAAC GAGAAAAATA AATGTGATGA 405 TTGGGGATTG AACCCACAAC CTCTTGGATA GGTGAGAAAG TTAATAGATA AATTAAAA 24656 ||||||||| |||||||||| ||||| ||| | ||||| || ||| | | | || |||| GTGGGGATTG AACCCACAAC CTCTTTAATA GATGAGAGAG TTAGGAAAAA AAAAAAAA 463 hqPGS_C08SLm0119I05.1-_SGN-E226388- (24953 24872,24788 24656) ******************************************************************************** EST sequence 24 -strand 463 n (File: SGN-E226486-) 1 TATGATGATT AAATCGTGAT GTTCATGAAC AAGAAAATAA AAGTAAATTC CTTAACGAAT 61 TGTTTAAAAG TTTATGTAAA ACTCTAAGCC AAAACGCCTA AGCTAAATGC AAAGAAAGTG 121 AAGTAAAGGC ATATGTTAAT AGAGTATAGT TTCGGCTATT CTCTTGTAAA AATGAAGAAA 181 AGTATATGCT GTCATTGAGG GTAGAACTCG AGACCTTAAG GTCCTAATAT TAAGAGATAA 241 AGCCTTAAAA TAAAGGAGAA AAATAAATGT GTTGAGTGGG GATTGAACCC ATAACCTCTT 301 GAATAGATGA AAGAGTTAGG AGAAAAAAAA ATCTTGTGAG TGGGGATTGA ACCCACAACC 361 TCTTGAATGG ATGAGAAATT AACGAGAAAA ATAAATGTGA TGAGTGGGGA TTGAACCCAC 421 AACCTCTTTA ATAGATGAGA GAGTTAGGAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 28478 to 24070): Exon 1 24953 24872 ( 82 n); cDNA 247 328 ( 82 n); score: 0.915 Intron 1 24871 24789 ( 83 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 2 24788 24656 ( 133 n); cDNA 329 461 ( 133 n); score: 0.850 MATCH C08SLm0119I05.1- SGN-E226486- 0.874 215 0.464 C PGS_C08SLm0119I05.1-_SGN-E226486- (24953 24872,24788 24656) Alignment (genomic DNA sequence = upper lines): AAAATAAAGG ATAAAAATAT ATGTGGTGAG TGGGGATTGA ATCCACAACC TCTTGAATAG 24894 |||||||||| | ||||||| ||||| |||| |||||||||| | ||| |||| |||||||||| AAAATAAAGG AGAAAAATAA ATGTGTTGAG TGGGGATTGA ACCCATAACC TCTTGAATAG 306 ATGAGAGAGC TAGGAGAAAA AATAAATTAA TGTGGTGAGT GGGGATTGAA CCCACAACCT 24834 |||| |||| |||||||||| || ATGAAAGAGT TAGGAGAAAA AA........ .......... .......... .......... 328 CTTGAATAGA TGAGAGAGTT AGGAGAAAAA ATAAAGAAGA AAAATAAATG TGGTGAGTGG 24774 |||| | |||||||| .......... .......... .......... .......... .....AAATC TTGTGAGTGG 343 GGATTGAACC CACAACCTCT TGAAGAGATG AGAGACTTAG GAGAAAAATA AATGTGGTGA 24714 |||||||||| |||||||||| |||| |||| ||| | | | |||||||||| |||||| ||| GGATTGAACC CACAACCTCT TGAATGGATG AGAAATTAAC GAGAAAAATA AATGTGATGA 403 TTGGGGATTG AACCCACAAC CTCTTGGATA GGTGAGAAAG TTAATAGATA AATTAAAA 24656 ||||||||| |||||||||| ||||| ||| | ||||| || ||| | | | || |||| GTGGGGATTG AACCCACAAC CTCTTTAATA GATGAGAGAG TTAGGAAAAA AAAAAAAA 461 hqPGS_C08SLm0119I05.1-_SGN-E226486- (24953 24872,24788 24656) ******************************************************************************** EST sequence 29 -strand 341 n (File: SGN-E224375-) 1 GTAAAGGCAT ATGTTAATAG AGTATAGTTT CGGCTATTCT CTTGTAAAAA TGAAGAAAAG 61 TATATGCTGT CATTGAGGGT AGAACTCGAG ACCTTAAGGT CCTAATATTA AGAGATAAAG 121 CCTTAAAATA AAGGAGAAAA ATAAATGTGT TGAGTGGGGA TTGAACCCAT AACCTCTTGA 181 ATAGATGAAA GAGTTAGGAG AAAAAAAAAT CTTGTGAGTG GGGATTGAAC CCACAACCTC 241 TTGAATGGAT GAGAAATTAA CGAGAAAAAT AAATGTGATG AGTGGGGATT GAACCCACAA 301 CCTCTTTAAT AGATGAGAGA GTTAGAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 27258 to 24052): Exon 1 24953 24872 ( 82 n); cDNA 125 206 ( 82 n); score: 0.915 Intron 1 24871 24789 ( 83 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 2 24788 24656 ( 133 n); cDNA 207 339 ( 133 n); score: 0.850 MATCH C08SLm0119I05.1- SGN-E224375- 0.874 215 0.630 C PGS_C08SLm0119I05.1-_SGN-E224375- (24953 24872,24788 24656) Alignment (genomic DNA sequence = upper lines): AAAATAAAGG ATAAAAATAT ATGTGGTGAG TGGGGATTGA ATCCACAACC TCTTGAATAG 24894 |||||||||| | ||||||| ||||| |||| |||||||||| | ||| |||| |||||||||| AAAATAAAGG AGAAAAATAA ATGTGTTGAG TGGGGATTGA ACCCATAACC TCTTGAATAG 184 ATGAGAGAGC TAGGAGAAAA AATAAATTAA TGTGGTGAGT GGGGATTGAA CCCACAACCT 24834 |||| |||| |||||||||| || ATGAAAGAGT TAGGAGAAAA AA........ .......... .......... .......... 206 CTTGAATAGA TGAGAGAGTT AGGAGAAAAA ATAAAGAAGA AAAATAAATG TGGTGAGTGG 24774 |||| | |||||||| .......... .......... .......... .......... .....AAATC TTGTGAGTGG 221 GGATTGAACC CACAACCTCT TGAAGAGATG AGAGACTTAG GAGAAAAATA AATGTGGTGA 24714 |||||||||| |||||||||| |||| |||| ||| | | | |||||||||| |||||| ||| GGATTGAACC CACAACCTCT TGAATGGATG AGAAATTAAC GAGAAAAATA AATGTGATGA 281 TTGGGGATTG AACCCACAAC CTCTTGGATA GGTGAGAAAG TTAATAGATA AATTAAAA 24656 ||||||||| |||||||||| ||||| ||| | ||||| || ||| | | | || |||| GTGGGGATTG AACCCACAAC CTCTTTAATA GATGAGAGAG TTAGAAAAAA AAAAAAAA 339 hqPGS_C08SLm0119I05.1-_SGN-E224375- (24953 24872,24788 24656) ******************************************************************************** EST sequence 30 -strand 356 n (File: SGN-E224875-) 1 TGCAAAGAAA GTGAAGTAAA GGCATATGTT AATAGAGTAT AGTTTCGGCT ATTCTCTTGT 61 AAAAATGAAG AAAAGTATAT GCTGTCATTG AGGGTAGAAC TCGAGACCTT AAGGTCCTAA 121 TATTAAGAGA TAAAGCCTTA AAATAAAGGA GAAAAATAAA TGTGTTGAGT GGGGATTGAA 181 CCCATAACCT CTTGAATAGA TGAAAGAGTT AGGAGAAAAA AAAATCTTGT GAGTGGGGAT 241 TGAACCCACA ACCTCTTGAA TGGATGAGAA ATTAACGAGA AAAATAAATG TGATGAGTGG 301 GGATTGAACC CACAACCTCT TTAATAAATG AGAGCCTTAG GAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 27408 to 23346): Exon 1 24953 24872 ( 82 n); cDNA 140 221 ( 82 n); score: 0.915 Intron 1 24871 24789 ( 83 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 2 24788 24684 ( 105 n); cDNA 222 326 ( 105 n); score: 0.886 PPA cDNA 342 356 MATCH C08SLm0119I05.1- SGN-E224875- 0.898 187 0.525 C PGS_C08SLm0119I05.1-_SGN-E224875- (24953 24872,24788 24684) Alignment (genomic DNA sequence = upper lines): AAAATAAAGG ATAAAAATAT ATGTGGTGAG TGGGGATTGA ATCCACAACC TCTTGAATAG 24894 |||||||||| | ||||||| ||||| |||| |||||||||| | ||| |||| |||||||||| AAAATAAAGG AGAAAAATAA ATGTGTTGAG TGGGGATTGA ACCCATAACC TCTTGAATAG 199 ATGAGAGAGC TAGGAGAAAA AATAAATTAA TGTGGTGAGT GGGGATTGAA CCCACAACCT 24834 |||| |||| |||||||||| || ATGAAAGAGT TAGGAGAAAA AA........ .......... .......... .......... 221 CTTGAATAGA TGAGAGAGTT AGGAGAAAAA ATAAAGAAGA AAAATAAATG TGGTGAGTGG 24774 |||| | |||||||| .......... .......... .......... .......... .....AAATC TTGTGAGTGG 236 GGATTGAACC CACAACCTCT TGAAGAGATG AGAGACTTAG GAGAAAAATA AATGTGGTGA 24714 |||||||||| |||||||||| |||| |||| ||| | | | |||||||||| |||||| ||| GGATTGAACC CACAACCTCT TGAATGGATG AGAAATTAAC GAGAAAAATA AATGTGATGA 296 TTGGGGATTG AACCCACAAC CTCTTGGATA 24684 ||||||||| |||||||||| ||||| ||| GTGGGGATTG AACCCACAAC CTCTTTAATA 326 hqPGS_C08SLm0119I05.1-_SGN-E224875- (24953 24872,24788 24684) ******************************************************************************** EST sequence 42 -strand 832 n (File: SGN-E548992-) 1 TATGTTGAAA TTATGTGACT TATGTTGTGT TTCCGAAAAT GTAACTACGT ATGTATGTGT 61 CTGTTGCCAT GGCTATTGTT CATGGTTTAG GACTTCAAAT GGCATGATAG TTCTTTATAT 121 TTCATGTACA CATGTTAATA TAAATGTGAT GTTCATATGA GTTGAAATGT GGCTGATTTC 181 AGGGATAATG TCTTAGCTAA ACGAATACAT AAAGACGCAC CTATATGGTT ATAAATGCAC 241 TACGAAATTC CCCTAAGAAC TAAGGTGTAA CTTGATGAAA GGATGCTGAA AAATTAAAAG 301 AAAATTTTTA GCTTCTATTG ATGAATTTCG GTCAGCAAAG AGGGTTCAAA ATGTTGAAAA 361 AAAATAAATT AAAACAAGTG AGGTCATGGA GGATTGAACC CGTGACCTCA CCATGTTTAA 421 AAACCATGAA AATAAAAAAG TAAAAAAATG AAATGTGGAG AGTGGGGGTT GAACCCACAA 481 CTTCTTGAAT GGATGAGAGA GTTAGGAGAA ACATAAAGGA GAAAATAAAA CGTGGAGAGT 541 GGGGATTGAA CCCACAACCT CTTGAATGGA TGAGATAGTT AGGGGAAACA TAAAGGAGAA 601 AATAAAATGT GGAGAGTTCG GATTGAACCC ACAACCTCTT GAATGGATGA GAGAGTTAGG 661 ATGAAAATAA AAGAGCAAAA TAAAATGTGG AGAGTGGATT GAACCCACAA CCTCTTGAAT 721 GGATGGGGGA GTTAGGAGAA AAATAAAGGA GAAAAATAAA TGTGGAGAGT GGGGATTGAA 781 CCCACAGCCT CTTGGATAGG TGAGAAAGTT AAGAAATAAA TTAAAAAAGA AA Predicted gene structure (within gDNA segment 32896 to 23870): Exon 1 31795 31768 ( 28 n); cDNA 361 388 ( 28 n); score: 0.750 Intron 1 31767 30153 (1615 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 30152 30127 ( 26 n); cDNA 389 414 ( 26 n); score: 0.615 Intron 2 30126 26781 (3346 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 26780 26757 ( 24 n); cDNA 415 437 ( 23 n); score: 0.750 Intron 3 26756 26236 ( 521 n); Pd: 0.129 (s: 0), Pa: 0.000 (s: 0) Exon 4 26235 26224 ( 12 n); cDNA 438 449 ( 12 n); score: 0.750 Intron 4 26223 26049 ( 175 n); Pd: 0.993 (s: 0), Pa: 0.881 (s: 0) Exon 5 26048 26044 ( 5 n); cDNA 450 454 ( 5 n); score: 0.800 Intron 5 26043 25283 ( 761 n); Pd: 0.000 (s: 0), Pa: 0.998 (s: 0) Exon 6 25282 25277 ( 6 n); cDNA 455 460 ( 6 n); score: 1.000 Intron 6 25276 25003 ( 274 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 7 25002 24722 ( 281 n); cDNA 461 747 ( 287 n); score: 0.790 MATCH C08SLm0119I05.1- SGN-E548992- 0.790 382 0.459 C PGS_C08SLm0119I05.1-_SGN-E548992- (31795 31768,30152 30127,26780 26757,26235 26224,26048 26044,25282 25277,25002 24722) Alignment (genomic DNA sequence = upper lines): AAAATGGTGT AAAAGAAGTG AGGTGCTGGC TTGACTAAAT AATGCTAGTA GGTGACAAGT 31736 ||||| | |||| ||||| |||| || AAAATAAATT AAAACAAGTG AGGTCATG.. .......... .......... .......... 388 ATGTGATGCA CCCACTTAGA TTTAGTGGGC TGAATTTTAA GTGAAAAGGT CAAGTAGGTG 31676 .......... .......... .......... .......... .......... .......... 388 ATGCACCTAC TTAGAATAAG TGGTCTGCAT TGTAAGTGAA AAGGGCAAGT AGGTGATACA 31616 .......... .......... .......... .......... .......... .......... 388 CCTACTTAGA ATAAGTGAAC TGCATTAAGT GAAAAGGGAA AGGAGGTGAT GCGCCTACTT 31556 .......... .......... .......... .......... .......... .......... 388 AGAATAAAAG GACTACATTT TGAGTTAAAA AAACAAGTAG GTGATGCACC TACTTAGAAT 31496 .......... .......... .......... .......... .......... .......... 388 AAGTGGACTG TATTTAAAGT GAGAAGAGCA AGTAGGTGAT GCACCTACTT AGAATAAGTG 31436 .......... .......... .......... .......... .......... .......... 388 GACTGCATTT TAAGTGAAAA GGGATAGGAG GTGATGAACC TACTTAAAAA CTTGTGGCAG 31376 .......... .......... .......... .......... .......... .......... 388 AACTTAAGGA GGCGATGCAC CTACTTACTT AAAAGTAAAT GACCATATTA TTTCTCCAAT 31316 .......... .......... .......... .......... .......... .......... 388 TTATTAAGTG AAAATGTCTA AAAAGGACCT CTAAATCACT CAAGCTTATC ACATCTTCTT 31256 .......... .......... .......... .......... .......... .......... 388 CATCACTTAT TCTCCGAAAA ATTTCCCCCA TGGAAAGCCA TTGAATGTCC AAGAGTTCTG 31196 .......... .......... .......... .......... .......... .......... 388 GTCTATAACT TCACAATTAA AATCTGAAGC AAACCCTTTC TTTTAAAAGT ACAAGTTAGT 31136 .......... .......... .......... .......... .......... .......... 388 ATAACATATC CCATCTTAGA GAATTCAAGT GAATAATCTG ATTTAACATT AAGTTAAGGG 31076 .......... .......... .......... .......... .......... .......... 388 GGATAGAAGA ACCTAAACCT TGAAGAATCC AAGTCTTAGC AAGTGAGGTT TCTGTCCAGT 31016 .......... .......... .......... .......... .......... .......... 388 AAGGTAATCT ATGGAAATTT TCATCCCTCT CTTGTTCTTG CATTGTTTGT GAAAGATTTT 30956 .......... .......... .......... .......... .......... .......... 388 ATGTGTTAAT AGAATAAGGA GTATTGTATC CATATAGTGT GATGTTGGAG GAAGGATTTG 30896 .......... .......... .......... .......... .......... .......... 388 CTGGTTGGGA AAGCCATGGA GTGGAGTCCC CTTAAATTTT GATTCTCAGC TTGTTTAAGG 30836 .......... .......... .......... .......... .......... .......... 388 TTCTTAATGG TAGTGTTAGT TGGAACTCAC AGGATGTTGA TTGGAAGCAA TATGTTCATA 30776 .......... .......... .......... .......... .......... .......... 388 TTTCTATTTC CTAGGGACTA TTTTGTATAT CGTAAAATAA TGGGGTGTGG ATGGATATGT 30716 .......... .......... .......... .......... .......... .......... 388 GTAAAGAAGT CATGATAGCT TGTTATAGGA TAAGAACAAT CAAAGTGTAG TGATACAACC 30656 .......... .......... .......... .......... .......... .......... 388 ATTTAATTGA GTACTGCATG AGCTTACTTC ATGCCATCCC TTTATATTCT TTTCTAAACA 30596 .......... .......... .......... .......... .......... .......... 388 TTAAAAAGCC CGAGGAGGTT TGAGAGGACC ATATAAGAAG GATGTATAGT ATATTATAAA 30536 .......... .......... .......... .......... .......... .......... 388 AGTTGGAGGA GAATGGGTGG GAAGAACATC CTTGATAGGA TAAATTACAG ATTTACTGCA 30476 .......... .......... .......... .......... .......... .......... 388 AAATACTATT TTGGTCTGAT CAAGTAGCAC AAACTTGTTT ATAAAAAACT AATGCTAATT 30416 .......... .......... .......... .......... .......... .......... 388 TTGTTATTTA GTCCATTGTA GATAAATAGT CTGAAAGGAA GACAATTAAC TCATAGTAAT 30356 .......... .......... .......... .......... .......... .......... 388 ATCCAAAGTT TTGCCTCAAG GTATGTAAGG CTATTCGATT TCCTATTTCT TTGGCATGAA 30296 .......... .......... .......... .......... .......... .......... 388 TCCAACACTT GTTAGCTATT TAATTGCCTT TGGTAGTGAC TGATCCATAA TTTCAATTCC 30236 .......... .......... .......... .......... .......... .......... 388 TACTCCCTAG AGCGTTAAAA TAAGTACTCT AATATGAGTT TATTACTAAA TGTGCATGCT 30176 .......... .......... .......... .......... .......... .......... 388 TACTCTACCA AGTATTAGAA TACAAGGTTT AAACTTGTTT CATCATCAAG TACCCTTTGC 30116 ||| || ||| || | ||| || .......... .......... ...GAGGATT GAACCCGTGA CCTCACCAT. .......... 414 ACGTATTCCC CTTGTATAAA CCAAAGTGAT CCTATATTAT ATATGGTACA TATGTGCATA 30056 .......... .......... .......... .......... .......... .......... 414 TGTTGGATAT ACAATCTGCC CATATCAAGC CAACTTGCTT CGATTGTCTA ATCCATCATA 29996 .......... .......... .......... .......... .......... .......... 414 TATGCCATTT TGTCACAAGT TCATATGTTC CCTTTATTGG TAATTACTAC ACATTGTGTT 29936 .......... .......... .......... .......... .......... .......... 414 AGACTAGTAT GTTATGTCAA AAGATGTCTA CTTGCTCTAC TGTACATTTA TATGTACTTA 29876 .......... .......... .......... .......... .......... .......... 414 CTTGCAATAT GTATCCGTCT TTAAGTTCAA TCTAACACAT TCTTCCTTGG TTCCACATTC 29816 .......... .......... .......... .......... .......... .......... 414 ATGTATACCT TGTCTTTGAT ACTAGTTAGT GAGTATTTGC TATCATATAG AGTTCAAATC 29756 .......... .......... .......... .......... .......... .......... 414 TCGTGGATGA AAGCTAAATG TCTTCACTTG GTATGTACTT CAATTTGAGA TGTCAAAATG 29696 .......... .......... .......... .......... .......... .......... 414 CTAACTGATT TATAATATCC TAAGTATTAT GTTGGTGTCA CATTTTCTTC CCATGTCATT 29636 .......... .......... .......... .......... .......... .......... 414 TTCATTATTA TAAGTCCATA TTCATATGTC TTTTAGTACT GGTTAAGTCT AAAATTCAAC 29576 .......... .......... .......... .......... .......... .......... 414 AACGATTGTG ACCACCAAAA CAACAATCTC AAAATAGTTA TGATTATCCA AAGAACAATC 29516 .......... .......... .......... .......... .......... .......... 414 TCAAAAGAGT TCTGAATATC AAACAACAAT CTCAAAGATT AAAGAATCTA AGTGAAAAAT 29456 .......... .......... .......... .......... .......... .......... 414 GTATGTATAA TTATGGGTGG TATCCTAGGG GAGAATGTCT ACCATGAGGC GATCCCAATT 29396 .......... .......... .......... .......... .......... .......... 414 GATATTGAAG GGTTGCATCT TAGGGGCAAA AGTCTTTCAT AGCGTCTTTG ATTCTCTAAG 29336 .......... .......... .......... .......... .......... .......... 414 AGGTATGAGA CGCCGACCCT TCAAAATCAG AGAGTAACTT GGGGCGCTTT GTCTGACATG 29276 .......... .......... .......... .......... .......... .......... 414 ACTTTCTAGA GGTCAACATT CAGAGGCCTC TTCTTTGGGC TCTGAGAGAG GCAGCGCCCC 29216 .......... .......... .......... .......... .......... .......... 414 AAGGTCCTAC CCAAGTTCAC TCCGACTTTT CTTCTTTGTT TTTCATCTCT AAATCCCCTA 29156 .......... .......... .......... .......... .......... .......... 414 TTTTGACTTG GTTATTTCCC CAAGCACTTA GAATATACTA TTATATGAAA ATTTCTTATC 29096 .......... .......... .......... .......... .......... .......... 414 GAATTCACAC CTAGAGTCAT GGATTCGGAT CAAACAACTC TTCAACAATA TCAACGAATA 29036 .......... .......... .......... .......... .......... .......... 414 AGGAATTCAA TAGAATTTCA ACAAACTCAT TAAGAACTCA ATTTCTAAGC TTTCAAAAAC 28976 .......... .......... .......... .......... .......... .......... 414 TTTAATTCGC TGAAATAAAA CATGATTGGT GTGTGGGTGA ACTAACCCAA TGCTATATTA 28916 .......... .......... .......... .......... .......... .......... 414 TTTAACATAA CTTGTAGGGA TCACCCCTTG ACGAAACCCA TAAGCGATTC TTGAAGAATT 28856 .......... .......... .......... .......... .......... .......... 414 TGACGATTTC CTTGCTTCTC CTTCTCTTTT CTCCTCTTTT TATCTCTTCT CTAAAATCCT 28796 .......... .......... .......... .......... .......... .......... 414 AACCTATTTT AAAAAGCGTA ATCTGACGAA GTTTAGCTTA GACCCCTAAG TAATTACCAA 28736 .......... .......... .......... .......... .......... .......... 414 AAATGATTAA AAATAATAGG GTAAGGAAAA GACCAAACTA CCTTTCATAA ATCTGGTTTT 28676 .......... .......... .......... .......... .......... .......... 414 GACTTTCCTT AACTAGACAT CCCAACTTCC AATGGACATA TCTCATTTAT ACAAACTCAG 28616 .......... .......... .......... .......... .......... .......... 414 AATGTAGTAA AATCAGCGGC ATTGGAAAGA TTATTCCAAG ATACTTCCTA CGATATCTAG 28556 .......... .......... .......... .......... .......... .......... 414 AAGCAAACCT AACTCATCCT GAGCTAGGAT TTATGGTATT TTGAAGTTGA CCAAAAACTC 28496 .......... .......... .......... .......... .......... .......... 414 ATCTTAACAT ACTTAAAATT TTTTCCAAAA TTTTATATTT TTTCCAAAAA TTAATATTTC 28436 .......... .......... .......... .......... .......... .......... 414 CAATTCTTAA CTACTTCCTA GTTATTTTAA TCATCGATAT GTTACAGAAA TTTACAGAGA 28376 .......... .......... .......... .......... .......... .......... 414 AATCTTTTGA TATTTGTTTT GGAACTAGAG AGACCTTGTT GCATGTTCTT GGAAGGGTGC 28316 .......... .......... .......... .......... .......... .......... 414 TCACCTTTTT ATCCCCGTTT TGCTCTAAGT TCAATGCATT TTTTGTGAAT GATTGATTAG 28256 .......... .......... .......... .......... .......... .......... 414 GATAGGTTTT GATTATGTTA ATAGGCTTAA ACTTACTAAA TTTGCGTTAT TTAGTGGTTG 28196 .......... .......... .......... .......... .......... .......... 414 AACGACGTAG TGTAGGTGTC CAATGCATAA GGGAAAAGAC CAAGTGACCT CTAACTTAAA 28136 .......... .......... .......... .......... .......... .......... 414 CTCTAGTGAG GCTTCATATG GGCCCTATGA AGGGCCGTCT GAAGGACTAT AACCCGTCAA 28076 .......... .......... .......... .......... .......... .......... 414 GTGGGTCGTT GTCAGTTGGT CTATAGTAGC TGATTTTGGG GACCCAACTA CTATCCTTAT 28016 .......... .......... .......... .......... .......... .......... 414 CACGGTTCGT GTGAAGGACC ACAGCCCATG AAGGTCTTTG TGAATTCTCA CTTGGGATGA 27956 .......... .......... .......... .......... .......... .......... 414 GTCTGGTGGC TCATGTCCAT GGACCCATCC CTCCATGGCC CGTAATCAAG ACCACGACCC 27896 .......... .......... .......... .......... .......... .......... 414 ATTGAGGGCT TCCTGGCCTA ACGTCAGGGC TTGAGAGGCT CTACCTCACT TCTACAAGCA 27836 .......... .......... .......... .......... .......... .......... 414 CCAATACGAC CCATGTGGTG GTCCAAAGCC TGTGAAAGTC TCGTGGTCTA CCATTTCTGG 27776 .......... .......... .......... .......... .......... .......... 414 GCTGGGTGTG AACAATGGAC AGATTGATGG ACCGTCGTTC CTTTCAAGTC ACGTGAACCC 27716 .......... .......... .......... .......... .......... .......... 414 TGTCTTGGTT CACCTATTCT CTATTTTTCT TGTGTGATAA CTGTTGAGGT GTTAAAACTA 27656 .......... .......... .......... .......... .......... .......... 414 ACCTCTAGTA CTCGAGGGGA ATAATTTCCT TAAGGGGATA TTGTGCATTC ACTTGGCTGA 27596 .......... .......... .......... .......... .......... .......... 414 ATTTTCTTTC TTTGAGATTT TTTAAATATT TTTCTAATGA TTCTATTTTC TCTACTACTT 27536 .......... .......... .......... .......... .......... .......... 414 TTAATGTTCT AGTTTTGATA ATACTGTTTA AACCTTGTTA TTTCTTTCCA AGTTTTTCAA 27476 .......... .......... .......... .......... .......... .......... 414 CGTTTTGTTC TAGTATCTTA GGAATACAAG ATGAACAATA GAAAATACCG ATGAATCCAA 27416 .......... .......... .......... .......... .......... .......... 414 TCGGAAACCT AATAATCCAA CTCTAGTTGC TAGTTGTACC AAGAACCATA CTAGCCCGTT 27356 .......... .......... .......... .......... .......... .......... 414 GAGTATCCTT GAAAAGACTA AAACTCCCAA CACTAAATAT CGAGGAGCCG AGGTGGCCAT 27296 .......... .......... .......... .......... .......... .......... 414 TAAGTCTGTA GGAAGCTGGC ATCCCCCCAT ATCCTCTAGT TGTTGCTGAA CATACCTAGT 27236 .......... .......... .......... .......... .......... .......... 414 GTCCTCACAA GAAATTGAAG TCCTAATGAT TTGAGTTGAC GTCCCATCTA CGTCCATCAA 27176 .......... .......... .......... .......... .......... .......... 414 ACACTTGTTG TCGATCTATG AAAGGGTGAT TTTAAGAAAG AATATTGAGA ATGATGGAAT 27116 .......... .......... .......... .......... .......... .......... 414 AAATTACATA TGATAATGTT AGCCTTCAAA GACATGATAC AAATGTCTTC ACACCAATCC 27056 .......... .......... .......... .......... .......... .......... 414 GCAAGGCTCT ACTAGATACT TACTTGCATA CCATCTATAA TGACAAGCCT ATACATTTAA 26996 .......... .......... .......... .......... .......... .......... 414 TACCAATCTG TCAAGTCCGA ATTCTTAGGT TATTATGGAA TCTATTACGT CTTACTAGTA 26936 .......... .......... .......... .......... .......... .......... 414 GGTAAGACAA AATTATTACC TAAAACTAGA AGAAATGGGC TATTGCGTTA AAATGAATTT 26876 .......... .......... .......... .......... .......... .......... 414 ACAAGACAAA TAATAATGAT AAAAATCAAA TTAAAGGAAA CCAAGAATGA AATCAATATA 26816 .......... .......... .......... .......... .......... .......... 414 AAAAATAAAC ACTCAAGATA TGGTATTGGT CGGTATTTTA GAAACTAATC AAAATAGAAG 26756 |||| |||| || |||||| || .......... .......... .......... .....GTTTA AAAAC-CATG AAAATAAAA. 437 TACTATAATA ATAATATATA ATATTTCTCT GAAAACAAAA TAAAGACTAG TCCTAGCCAA 26696 .......... .......... .......... .......... .......... .......... 437 ATGGAGGGAG ATAGGCAACT TTAAACGTCA ACCGCTCAAA AAAATCCCCG AATCCAAAGA 26636 .......... .......... .......... .......... .......... .......... 437 GCTACTTTTC ACAAGACCCA AAATCAGCGG TGAGAACTCA TTGTATGATT TGCAGAGTGC 26576 .......... .......... .......... .......... .......... .......... 437 GTATGTATAG TATAAATACC AATAAGTGGA GTCAACAAAC ATAAGACGAC TGAGCTCCAA 26516 .......... .......... .......... .......... .......... .......... 437 AAAAAAAATC AAGCATAAAC ATGTAAGAAG GGAGCATATA TCACAAGTAA CTAAAGCAAT 26456 .......... .......... .......... .......... .......... .......... 437 AACTGGGAAC TCGTATTAGA AAACAAACCG ATATAAGGAA AAAATGGTAA ATGAAATAAG 26396 .......... .......... .......... .......... .......... .......... 437 GGGTTGTGCC CGGATGCGCT AGGCCAAAAA CCTATTTACA ACCAAACTCA ACGAAGGATG 26336 .......... .......... .......... .......... .......... .......... 437 ACAACTAGTT GAGGGCATAC TAATTGGATT AACCACAAAT ATCACATAAA TGCCAAGAAG 26276 .......... .......... .......... .......... .......... .......... 437 GCTATTCTAA AACAAACCCT ACATGAAAAA TATTAATTAG AAGAGAAAAA AGGCAGTATC 26216 ||| ||||| | .......... .......... .......... .......... AAGTAAAAAA AT........ 449 CACCATCAAA CAAATTATCT CCCTTTATAA TACATCTAGT CTATTATCAA TCAAACAATA 26156 .......... .......... .......... .......... .......... .......... 449 ACCTTACCCA ACCCTTATAT GCCAGAATTT ATACAACAAC AAACTAAACC GTACGCCCTA 26096 .......... .......... .......... .......... .......... .......... 449 CCATAAGACT AACAAGTACT GACAACAAAC ATTTATTGTT GTGGTAGGCA ATGCATATTA 26036 | | || .......... .......... .......... .......... .......GAA AT........ 454 ATGCGAGTTA TGTATTAAAA TTAGTAGTAC CATTAGTGAC AAGTGCCTCT TGCTAAGGTA 25976 .......... .......... .......... .......... .......... .......... 454 TGTACACCTA CCTCCTGCTC TAAAAAACCA GGTTTGACCC ATGTGCCTCC TTTTTCATGT 25916 .......... .......... .......... .......... .......... .......... 454 TCAATGGATC ACACATCTAT ATATACTTGC GTGGCTAGAT ATAAAATAGA AGAAATAATA 25856 .......... .......... .......... .......... .......... .......... 454 TTGAAAGGAT TGGTGGATGT CTGGTCTGTC AAGTAAAAAG TGAGTGTATC CTCGATGACT 25796 .......... .......... .......... .......... .......... .......... 454 ATTTATTCCT GATTCCACTT TAAATTAGTA AAGCTATTAT GACTCTCATA GAAATTTCAA 25736 .......... .......... .......... .......... .......... .......... 454 TTAAAAATGA TTTGGGCAAA AACCCTACTT TTCAAAGAAG ATATTGAGAA TCAATGATGC 25676 .......... .......... .......... .......... .......... .......... 454 ACCAAGGTCA TACTGTATAT CAATTGAGAA TGAGAAATTA ATCTAATGCA TGCCATCACT 25616 .......... .......... .......... .......... .......... .......... 454 ATAACAACCC TAAAATGACT ATGCTAAGTA ATGCCTAATG TATCTAGAAT GCCTAGATTA 25556 .......... .......... .......... .......... .......... .......... 454 GACCGGGTTC ACGTGGATTG ATGCACATAG AACTAGACCT CTGAACCCTT GCAACAGCCA 25496 .......... .......... .......... .......... .......... .......... 454 AAACAACTAA CTTGTGAAGT TAGTTGAGAT AGGAAAGGTT GAGTCCAGCC ATGTAGGGCT 25436 .......... .......... .......... .......... .......... .......... 454 CCCGAATATG AAGATTTACT GGAATGAATC TTTACCGGAC TTAAAAAGGG GAAATCTTAA 25376 .......... .......... .......... .......... .......... .......... 454 GTTTGGAAGG TCTAGGGGTA AAATGGTCTT TTTACATGAT AAGGGTAGTA TTACAATTAC 25316 .......... .......... .......... .......... .......... .......... 454 CCTAAATATG CAATTAATTA TTACATTAAT CAGGTGGAGG GGAATTTTGG GTCAAAAGGA 25256 |||||| .......... .......... .......... ...GTGGAG. .......... .......... 460 CCGAAATTGT CCATGGAGCA AATTCTTTCT CCACCCGGGT TCGAATCTAG GTGGGAGCAA 25196 .......... .......... .......... .......... .......... .......... 460 TGATTTAACT TGATTTATTT ATATTGGTGA ATTAATTTAA GTAATTAATA TTTAAATACC 25136 .......... .......... .......... .......... .......... .......... 460 GAGTTAATAA AAGGAAAATC AGATTATTAT TAATTAATTA ATTAATTAAT GGGGTGGTTT 25076 .......... .......... .......... .......... .......... .......... 460 CGGTCGGTCG ACCCGAAAGG ACCCAATCGC GATGGGAACG TCATGGGTTC GAACCCCGCG 25016 .......... .......... .......... .......... .......... .......... 460 GAAGCAACAT TTAAGTGGGG ATTGAATCCA TAACCTCTTG AATGGATGCG AGAGTTAGGA 24956 ||||||| ||||| ||| ||| ||||| |||||||| | |||||||||| .......... ...AGTGGGG GTTGAACCCA CAACTTCTTG AATGGATGAG AGAGTTAGGA 507 GAAAAATAAA GGATAAAAAT ATATGTGGTG AGTGGGGATT GAATCCACAA CCTCTTGAAT 24896 |||| ||||| ||| |||| | | |||| | |||||||||| ||| |||||| |||||||||| GAAACATAAA GGAGAAAATA AAACGTGGAG AGTGGGGATT GAACCCACAA CCTCTTGAAT 567 AGATGAGAGA GCTAGGAGAA A-A-AA---- -TAAAT-TAA TGTGGTGAGT GGGGATTGAA 24844 ||||||| | | |||| ||| | | || |||| || ||||| |||| |||||||| GGATGAGATA GTTAGGGGAA ACATAAAGGA GAAAATAAAA TGTGGAGAGT TCGGATTGAA 627 CCCACAACCT CTTGAATAGA TGAGAGAGTT AGGAGAAAAA ATAAAGAAGA AAAATAAATG 24784 |||||||||| ||||||| || |||||||||| |||| |||| ||||| | ||| ||||| CCCACAACCT CTTGAATGGA TGAGAGAGTT AGGATGAAAA TAAAAGAGCA AAATAAAATG 687 TGGTGAGTGG GGATTGAACC CACAACCTCT TGAAGAGATG AGAGACTTAG GAGAAAAATA 24724 ||| |||| |||||||||| |||||||||| |||| |||| | || |||| |||||||||| TGGAGAGT-- GGATTGAACC CACAACCTCT TGAATGGATG GGGGAGTTAG GAGAAAAATA 745 AA 24722 || AA 747 hqPGS_C08SLm0119I05.1-_SGN-E548992- (31795 31768,30152 30127,26780 26757,26235 26224,26048 26044,25282 25277,25002 24722) ******************************************************************************** EST sequence 3 +strand 796 n (File: SGN-E549581+) 1 GGAGCTCTTT TCTCCCCCAA TTTTCTCTAA TCTCAAACCT TTATACTCTA CTTCTCATCA 61 GATTCCCCAC ACAACAACAA TGGCGGAAGA GGACGTTCAT TACGCATCAG AGGTTGGAAC 121 CAATAAGAGG AAGTACGAGG AAGAACAAAC CATTTCCCGT AGACCCACTG GATTCTCTGC 181 CCTGATTTCT TCCTAATCGC CTGATGCTTC TTACAAAACC GTTCCCAATG CCTATGGATG 241 ATTTCCAGCT TGCTAAGCAG AAGGATCAGG AAATTGCCGC TAGGCTATTG AGCACCGCGG 301 AGCCCAAAAA AGCTTGAATA GATAACGGCT CTGGTTTTGA TTCTGACGAA TACAAACCCA 361 TTGTTAATTC AGCTATGACA AATTCATATG GTTATCCGGT GCCAACCAAG AAGATTGAGG 421 TACCAAATGC CAGAGTTTGA GTGATCATAG GCAGAGGCGG GGAGACAATC AAGTATCTTC 481 AACTACAGTC TGGAGCCAAG ATTCAGGTTA CTCGAGACAT GGATTCTGAT CCAAATTCTC 541 GTACTAGAGG GGTTGAACTC GTGGGTACAC CAGAGCAAAT TGCTAAGGCA GAACAATTAA 601 TTAGTGACGT TCTTTGTGAG GCTGATGCAG AAGGTTCAGG CATAGTTTCC CGGAGGATGA 661 CTGGACAGGT TGCTGGGGCA GAACATTTTG TAATGAAAGT CGCCAACAAC AAGGTTGGTC 721 TTATTATTTG CAAAGGAGGT GAAACCATAA AAATATGCAA GCAAAGACTG GAGCGCGTAT 781 TCAGGTGATT CATCTA Predicted gene structure (within gDNA segment 35047 to 38299): Exon 1 35657 36006 ( 350 n); cDNA 2 351 ( 350 n); score: 0.980 Intron 1 36007 36716 ( 710 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 0.94) Exon 2 36717 36985 ( 269 n); cDNA 352 620 ( 269 n); score: 0.970 Intron 2 36986 37113 ( 128 n); Pd: 0.977 (s: 0.94), Pa: 0.996 (s: 0.98) Exon 3 37114 37206 ( 93 n); cDNA 621 713 ( 93 n); score: 0.957 Intron 3 37207 37291 ( 85 n); Pd: 0.981 (s: 0.94), Pa: 0.934 (s: 0.98) Exon 4 37292 37362 ( 71 n); cDNA 714 784 ( 71 n); score: 0.958 Intron 4 37363 37514 ( 152 n); Pd: 0.000 (s: 0.94), Pa: 0.997 (s: 0) Exon 5 37515 37526 ( 12 n); cDNA 785 796 ( 12 n); score: 0.917 MATCH C08SLm0119I05.1+ SGN-E549581+ 0.972 795 0.999 C PGS_C08SLm0119I05.1+_SGN-E549581+ (35657 36006,36717 36985,37114 37206,37292 37362,37515 37526) Alignment (genomic DNA sequence = upper lines): GAGCTCTTTT CTCCCCCAAT TTTCTCTAAT CTCAAAACTC TATACTCTAC TTCTCATCAG 35716 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| GAGCTCTTTT CTCCCCCAAT TTTCTCTAAT CTCAAACCTT TATACTCTAC TTCTCATCAG 61 ATTCCCCACA CAACAACAAT GGCGGAAGAG GACGTTCATT ACGCATCAAA GGTTGGAACC 35776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ATTCCCCACA CAACAACAAT GGCGGAAGAG GACGTTCATT ACGCATCAGA GGTTGGAACC 121 AATAAGAGGA AGTACAAGGA AGAACAAACC ATTTCCCGTA GACCCACTGG ATTCTCTGCC 35836 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGAGGA AGTACGAGGA AGAACAAACC ATTTCCCGTA GACCCACTGG ATTCTCTGCC 181 ATGATTTCTT CCTAATCACC TGATGCTTCT TACAAAACCG TTCCCAATGC CTATGGATGA 35896 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CTGATTTCTT CCTAATCGCC TGATGCTTCT TACAAAACCG TTCCCAATGC CTATGGATGA 241 TTTCCAGCTT GCTAAGCAGA AGGATCAGGA AATTGCCGCT AGGCTATTGA ACACCGCGGA 35956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTCCAGCTT GCTAAGCAGA AGGATCAGGA AATTGCCGCT AGGCTATTGA GCACCGCGGA 301 GCCCAAAAAA GCTTGAATAG ATAACGGCTC TGGTTTTGAT TCTGACGAAT GTAAGTTTTA 36016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAAAAAA GCTTGAATAG ATAACGGCTC TGGTTTTGAT TCTGACGAAT .......... 351 TTTTTCTTAA CTCTTGTTTT CTATTAGATA ATTTTTTTTA TTTTCTTCCA AATGATTCTC 36076 .......... .......... .......... .......... .......... .......... 351 CAGATTAGTT GTTCTCCTTT GTGAATAAGG AGTTCAGTTA ATTAAATAGA AGGAATATAG 36136 .......... .......... .......... .......... .......... .......... 351 CTATTGTGGT CGGTCTTATG CTCACTTTTT TCTCCTTTTG AGATGGTATT TGTTGTATCT 36196 .......... .......... .......... .......... .......... .......... 351 ATGCCTATTT TCTTCGTAGA TATTTTATTA ATAGATGGAA TCGATGAAAA AATCATGCCT 36256 .......... .......... .......... .......... .......... .......... 351 GGAAATTTAA ATGTTTACAG TTTTCTTTCT AATCTGTTAT TAATAGTTCT TTTGTTATAC 36316 .......... .......... .......... .......... .......... .......... 351 TCTTGAAAAT GGTTGTGTAG TTTTTGTGCA TTTATCCATT CTTTTATCGT AAGATAGTAA 36376 .......... .......... .......... .......... .......... .......... 351 GTTTTTGTTA TTTTGAGAAT CTCCCAACTT TTACTGCACT ATCATTTACT TTGGGTCTAT 36436 .......... .......... .......... .......... .......... .......... 351 GTTGATAGTT ATTTACATGG TATTGAAATG AATGGCTGCT GCGACTTTTT AATTTTTACC 36496 .......... .......... .......... .......... .......... .......... 351 CTGAGAATAT TATGACTTGT ATTTTAATGA TTTCAGGTCA GTAGTTGTAT TCTGAACTTA 36556 .......... .......... .......... .......... .......... .......... 351 TAGTGATAAT ATCAGCAGCA AATTGGTGCT TCTTCTTAGA TTTAGTGCGG TCACTTTTCC 36616 .......... .......... .......... .......... .......... .......... 351 TGTGCTTTAT ACCTCTTGAT GTTCTTATAT TCCCTCTGTA GCCAACTTTA CTTATGAGTC 36676 .......... .......... .......... .......... .......... .......... 351 CACTTATTGT TTACATGTTC TGTATTTTAT TTAATTGCAG AAAAACCCAT TGTTAATTCA 36736 | |||||||| |||||||||| .......... .......... .......... .......... ACAAACCCAT TGTTAATTCA 371 ACTGTGACAA ATTCATATGG TTATCCGGTG CCAAGCAAGA AGATTGAGGT ACCAAATGCC 36796 || |||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GCTATGACAA ATTCATATGG TTATCCGGTG CCAACCAAGA AGATTGAGGT ACCAAATGCC 431 AGAGTTGGAG TGATCATAGG CAGAGGCGGG GAGACAATCA AGTATCTTCA ACTACAGTCT 36856 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTTGAG TGATCATAGG CAGAGGCGGG GAGACAATCA AGTATCTTCA ACTACAGTCT 491 GGAGCCAAGA TTCAGGTTAC TCGAGACATG GATTCTGATC CAAATTCTCG TACTAGAGGG 36916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCCAAGA TTCAGGTTAC TCGAGACATG GATTCTGATC CAAATTCTCG TACTAGAGGG 551 GTTGAACTCG TGGGTACACC AGAGCAAATT TCTAAGGCTG AATAATTAAT TAGTGACGTT 36976 |||||||||| |||||||||| |||||||||| ||||||| | || ||||||| |||||||||| GTTGAACTCG TGGGTACACC AGAGCAAATT GCTAAGGCAG AACAATTAAT TAGTGACGTT 611 CTTTGTGAGG TACTATTTAT TTGTCTATAC CTGAACTTAA CTATACCTTA AAGTGCTTTC 37036 ||||||||| CTTTGTGAG. .......... .......... .......... .......... .......... 620 ATGTGTTGAA TCAAACCAAA CTGAACTTGT TCTTCTGATT TCAAATGTGT TACCCTTGCA 37096 .......... .......... .......... .......... .......... .......... 620 CAATATAAAT CTAATAGGCT GATGCAGAAG GCTCAGGCAT AGTTTCCCGG AGGATGACTG 37156 ||| |||||||||| | |||||||| |||||||||| |||||||||| .......... .......GCT GATGCAGAAG GTTCAGGCAT AGTTTCCCGG AGGATGACTG 663 GACAGGTTGC TGGGGTAGAA CATTTTGTAA TAAAAGTCGC CAATAACAAG GTGACTTTTA 37216 |||||||||| ||||| |||| |||||||||| | |||||||| ||| |||||| GACAGGTTGC TGGGGCAGAA CATTTTGTAA TGAAAGTCGC CAACAACAAG .......... 713 CTACTGTAGT TGATTAATCA TGCAATACAC TGTTTCCAGT TTATATTATC TCTCATACCT 37276 .......... .......... .......... .......... .......... .......... 713 ATTGAAATCC TTTAGGTTGG TCTTATTATT TGCAAAGGAG GTGAAACCAT AAAAATATGC 37336 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTTGG TCTTATTATT TGCAAAGGAG GTGAAACCAT AAAAATATGC 758 AAGAAAAGAC TAGAGCGCGT ATTCATGTAA TAATAAAATC TTCTGCAGTT AGTGTTGCAA 37396 ||| |||||| | |||||||| ||||| AAGCAAAGAC TGGAGCGCGT ATTCAG.... .......... .......... .......... 784 CTTTCGCCAT GGTAGCGATT CCCTTTTGTC AAGGTAATGA TTTGCGTGGT TTTAGCATCA 37456 .......... .......... .......... .......... .......... .......... 784 CATATCAGTT TACTTGAGAT TCAAAGTCAT TTGTCTTACC TTTCCCAACT TGTCACAGGT 37516 || .......... .......... .......... .......... .......... ........GT 786 GATTCCTCTA 37526 ||||| |||| GATTCATCTA 796 hqPGS_C08SLm0119I05.1+_SGN-E549581+ (35657 36006,36717 36985,37114 37206,37292 37362,37515 37526) ******************************************************************************** EST sequence 43 +strand 683 n (File: SGN-E333197+) 1 ACTTCTCATC AGATTCCCCA CACAACAACA ATGGCGGAAG AGGACGTTCA TTACGCATCA 61 AAGGTTGGAA CCAATAAGAG GAAGTACAAG GAAGAACAAA CCATTTCCCG TAGACCCACT 121 GGATTCTCTG CCATGATTTC TTCCTAATCA CCTGATGCTT CTTACAAAAC CGTTCCCAAT 181 GCCTATGGAT GATTTCCAGC TTGCTAAGCA GAAGGATCAG GAAATTGCCG CTAGGCTATT 241 GAACACCGCG GAGCCCAAAA AAGCTTGAAT AGATAACGGC TCTGGTTTTG ATTCTGACGA 301 ATAAAAACCC ATTGTTAATT CAACTGTGAC AAATTCATAT GGTTATCCGG TGCCAAGCAA 361 GAAGATTGAG GTACCAAATG CCAGAGTTGG AGTGATCATA GGCAGAGGCG GGGAGACAAT 421 CAAGTATCTT CAACTACAGT CTGGAGCCAA GATTCAGGTT ACTCGAGACA TGGATTCTGA 481 TCCAAATTCT CGTACTAGAG GGGTTGAACT CGTGGGTACA CCAGAGCAAA TTTCTAAGGC 541 TGAATAATTA ATTAGTGACG TTCTTTGTGA GGCTGATGCA GAAGGCTCAG GCATAGTTTC 601 CCGGAGGATG ACTGGACAGG TTGCTGGGGT AGAACATTTT GTAATAAAAG TCGCCAATAA 661 CAAGGTTGGT CTTATTATTT GCA Predicted gene structure (within gDNA segment 35105 to 37988): Exon 1 35705 36006 ( 302 n); cDNA 1 302 ( 302 n); score: 1.000 Intron 1 36007 36716 ( 710 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 36717 36985 ( 269 n); cDNA 303 571 ( 269 n); score: 1.000 Intron 2 36986 37113 ( 128 n); Pd: 0.977 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 37114 37206 ( 93 n); cDNA 572 664 ( 93 n); score: 1.000 Intron 3 37207 37291 ( 85 n); Pd: 0.981 (s: 1.00), Pa: 0.934 (s: 0) Exon 4 37292 37310 ( 19 n); cDNA 665 683 ( 19 n); score: 1.000 MATCH C08SLm0119I05.1+ SGN-E333197+ 1.000 683 1.000 C PGS_C08SLm0119I05.1+_SGN-E333197+ (35705 36006,36717 36985,37114 37206,37292 37310) Alignment (genomic DNA sequence = upper lines): ACTTCTCATC AGATTCCCCA CACAACAACA ATGGCGGAAG AGGACGTTCA TTACGCATCA 35764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCTCATC AGATTCCCCA CACAACAACA ATGGCGGAAG AGGACGTTCA TTACGCATCA 60 AAGGTTGGAA CCAATAAGAG GAAGTACAAG GAAGAACAAA CCATTTCCCG TAGACCCACT 35824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTGGAA CCAATAAGAG GAAGTACAAG GAAGAACAAA CCATTTCCCG TAGACCCACT 120 GGATTCTCTG CCATGATTTC TTCCTAATCA CCTGATGCTT CTTACAAAAC CGTTCCCAAT 35884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCTCTG CCATGATTTC TTCCTAATCA CCTGATGCTT CTTACAAAAC CGTTCCCAAT 180 GCCTATGGAT GATTTCCAGC TTGCTAAGCA GAAGGATCAG GAAATTGCCG CTAGGCTATT 35944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTATGGAT GATTTCCAGC TTGCTAAGCA GAAGGATCAG GAAATTGCCG CTAGGCTATT 240 GAACACCGCG GAGCCCAAAA AAGCTTGAAT AGATAACGGC TCTGGTTTTG ATTCTGACGA 36004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACCGCG GAGCCCAAAA AAGCTTGAAT AGATAACGGC TCTGGTTTTG ATTCTGACGA 300 ATGTAAGTTT TATTTTTCTT AACTCTTGTT TTCTATTAGA TAATTTTTTT TATTTTCTTC 36064 || AT........ .......... .......... .......... .......... .......... 302 CAAATGATTC TCCAGATTAG TTGTTCTCCT TTGTGAATAA GGAGTTCAGT TAATTAAATA 36124 .......... .......... .......... .......... .......... .......... 302 GAAGGAATAT AGCTATTGTG GTCGGTCTTA TGCTCACTTT TTTCTCCTTT TGAGATGGTA 36184 .......... .......... .......... .......... .......... .......... 302 TTTGTTGTAT CTATGCCTAT TTTCTTCGTA GATATTTTAT TAATAGATGG AATCGATGAA 36244 .......... .......... .......... .......... .......... .......... 302 AAAATCATGC CTGGAAATTT AAATGTTTAC AGTTTTCTTT CTAATCTGTT ATTAATAGTT 36304 .......... .......... .......... .......... .......... .......... 302 CTTTTGTTAT ACTCTTGAAA ATGGTTGTGT AGTTTTTGTG CATTTATCCA TTCTTTTATC 36364 .......... .......... .......... .......... .......... .......... 302 GTAAGATAGT AAGTTTTTGT TATTTTGAGA ATCTCCCAAC TTTTACTGCA CTATCATTTA 36424 .......... .......... .......... .......... .......... .......... 302 CTTTGGGTCT ATGTTGATAG TTATTTACAT GGTATTGAAA TGAATGGCTG CTGCGACTTT 36484 .......... .......... .......... .......... .......... .......... 302 TTAATTTTTA CCCTGAGAAT ATTATGACTT GTATTTTAAT GATTTCAGGT CAGTAGTTGT 36544 .......... .......... .......... .......... .......... .......... 302 ATTCTGAACT TATAGTGATA ATATCAGCAG CAAATTGGTG CTTCTTCTTA GATTTAGTGC 36604 .......... .......... .......... .......... .......... .......... 302 GGTCACTTTT CCTGTGCTTT ATACCTCTTG ATGTTCTTAT ATTCCCTCTG TAGCCAACTT 36664 .......... .......... .......... .......... .......... .......... 302 TACTTATGAG TCCACTTATT GTTTACATGT TCTGTATTTT ATTTAATTGC AGAAAAACCC 36724 |||||||| .......... .......... .......... .......... .......... ..AAAAACCC 310 ATTGTTAATT CAACTGTGAC AAATTCATAT GGTTATCCGG TGCCAAGCAA GAAGATTGAG 36784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTAATT CAACTGTGAC AAATTCATAT GGTTATCCGG TGCCAAGCAA GAAGATTGAG 370 GTACCAAATG CCAGAGTTGG AGTGATCATA GGCAGAGGCG GGGAGACAAT CAAGTATCTT 36844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCAAATG CCAGAGTTGG AGTGATCATA GGCAGAGGCG GGGAGACAAT CAAGTATCTT 430 CAACTACAGT CTGGAGCCAA GATTCAGGTT ACTCGAGACA TGGATTCTGA TCCAAATTCT 36904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTACAGT CTGGAGCCAA GATTCAGGTT ACTCGAGACA TGGATTCTGA TCCAAATTCT 490 CGTACTAGAG GGGTTGAACT CGTGGGTACA CCAGAGCAAA TTTCTAAGGC TGAATAATTA 36964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTACTAGAG GGGTTGAACT CGTGGGTACA CCAGAGCAAA TTTCTAAGGC TGAATAATTA 550 ATTAGTGACG TTCTTTGTGA GGTACTATTT ATTTGTCTAT ACCTGAACTT AACTATACCT 37024 |||||||||| |||||||||| | ATTAGTGACG TTCTTTGTGA G......... .......... .......... .......... 571 TAAAGTGCTT TCATGTGTTG AATCAAACCA AACTGAACTT GTTCTTCTGA TTTCAAATGT 37084 .......... .......... .......... .......... .......... .......... 571 GTTACCCTTG CACAATATAA ATCTAATAGG CTGATGCAGA AGGCTCAGGC ATAGTTTCCC 37144 | |||||||||| |||||||||| |||||||||| .......... .......... .........G CTGATGCAGA AGGCTCAGGC ATAGTTTCCC 602 GGAGGATGAC TGGACAGGTT GCTGGGGTAG AACATTTTGT AATAAAAGTC GCCAATAACA 37204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGATGAC TGGACAGGTT GCTGGGGTAG AACATTTTGT AATAAAAGTC GCCAATAACA 662 AGGTGACTTT TACTACTGTA GTTGATTAAT CATGCAATAC ACTGTTTCCA GTTTATATTA 37264 || AG........ .......... .......... .......... .......... .......... 664 TCTCTCATAC CTATTGAAAT CCTTTAGGTT GGTCTTATTA TTTGCA 37310 ||| |||||||||| |||||| .......... .......... .......GTT GGTCTTATTA TTTGCA 683 hqPGS_C08SLm0119I05.1+_SGN-E333197+ (35705 36006,36717 36985,37114 37206,37292 37310) ******************************************************************************** EST sequence 44 +strand 824 n (File: SGN-E544327+) 1 CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 61 AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 121 TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 181 CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 241 AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAATAAAA ACCCATTGTT 301 AATTCAACTG TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA 361 AATGCCAGAG TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA 421 CAGTCTGGAG CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT 481 AGAGGGGTTG AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT 541 GACGTTCTTT GTGAGGCTGA TGCAGAAGGC TCAGGCATAG TTTCCCGGAG GATGACTGGA 601 CAGGTTGCTG GGGTAGAACA TTTTGTAATA AAAGTCGCCA ATAACAAGGT TGGTCTTATT 661 ATTTGCAAAG GAGGTGAAAC CATAAAAATA TGCAAGAAAA GACTAGAGCG CGTATTCATG 721 TAATAATAAA ATCTTCTGCA GTTAGTGTTG CAAACTTTCG CATGGTAGCG ATTCCCTTTT 781 GTCAAGTGAT TCCTCTACAC TTGCCCTCCA GTGATACATC AACA Predicted gene structure (within gDNA segment 35121 to 38419): Exon 1 35721 36006 ( 286 n); cDNA 1 286 ( 286 n); score: 1.000 Intron 1 36007 36716 ( 710 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 36717 36985 ( 269 n); cDNA 287 555 ( 269 n); score: 1.000 Intron 2 36986 37113 ( 128 n); Pd: 0.977 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 37114 37206 ( 93 n); cDNA 556 648 ( 93 n); score: 1.000 Intron 3 37207 37291 ( 85 n); Pd: 0.981 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 4 37292 37429 ( 138 n); cDNA 649 785 ( 137 n); score: 0.967 Intron 4 37430 37514 ( 85 n); Pd: 0.792 (s: 0.91), Pa: 0.997 (s: 0) Exon 5 37515 37553 ( 39 n); cDNA 786 824 ( 39 n); score: 0.897 MATCH C08SLm0119I05.1+ SGN-E544327+ 0.994 825 1.001 C PGS_C08SLm0119I05.1+_SGN-E544327+ (35721 36006,36717 36985,37114 37206,37292 37429,37515 37553) Alignment (genomic DNA sequence = upper lines): CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 35780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 60 AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 35840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 120 TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 35900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 180 CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 35960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 240 AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAATGTAA GTTTTATTTT 36020 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAAT.... .......... 286 TCTTAACTCT TGTTTTCTAT TAGATAATTT TTTTTATTTT CTTCCAAATG ATTCTCCAGA 36080 .......... .......... .......... .......... .......... .......... 286 TTAGTTGTTC TCCTTTGTGA ATAAGGAGTT CAGTTAATTA AATAGAAGGA ATATAGCTAT 36140 .......... .......... .......... .......... .......... .......... 286 TGTGGTCGGT CTTATGCTCA CTTTTTTCTC CTTTTGAGAT GGTATTTGTT GTATCTATGC 36200 .......... .......... .......... .......... .......... .......... 286 CTATTTTCTT CGTAGATATT TTATTAATAG ATGGAATCGA TGAAAAAATC ATGCCTGGAA 36260 .......... .......... .......... .......... .......... .......... 286 ATTTAAATGT TTACAGTTTT CTTTCTAATC TGTTATTAAT AGTTCTTTTG TTATACTCTT 36320 .......... .......... .......... .......... .......... .......... 286 GAAAATGGTT GTGTAGTTTT TGTGCATTTA TCCATTCTTT TATCGTAAGA TAGTAAGTTT 36380 .......... .......... .......... .......... .......... .......... 286 TTGTTATTTT GAGAATCTCC CAACTTTTAC TGCACTATCA TTTACTTTGG GTCTATGTTG 36440 .......... .......... .......... .......... .......... .......... 286 ATAGTTATTT ACATGGTATT GAAATGAATG GCTGCTGCGA CTTTTTAATT TTTACCCTGA 36500 .......... .......... .......... .......... .......... .......... 286 GAATATTATG ACTTGTATTT TAATGATTTC AGGTCAGTAG TTGTATTCTG AACTTATAGT 36560 .......... .......... .......... .......... .......... .......... 286 GATAATATCA GCAGCAAATT GGTGCTTCTT CTTAGATTTA GTGCGGTCAC TTTTCCTGTG 36620 .......... .......... .......... .......... .......... .......... 286 CTTTATACCT CTTGATGTTC TTATATTCCC TCTGTAGCCA ACTTTACTTA TGAGTCCACT 36680 .......... .......... .......... .......... .......... .......... 286 TATTGTTTAC ATGTTCTGTA TTTTATTTAA TTGCAGAAAA ACCCATTGTT AATTCAACTG 36740 |||| |||||||||| |||||||||| .......... .......... .......... ......AAAA ACCCATTGTT AATTCAACTG 310 TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA AATGCCAGAG 36800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA AATGCCAGAG 370 TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA CAGTCTGGAG 36860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA CAGTCTGGAG 430 CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT AGAGGGGTTG 36920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT AGAGGGGTTG 490 AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT GACGTTCTTT 36980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT GACGTTCTTT 550 GTGAGGTACT ATTTATTTGT CTATACCTGA ACTTAACTAT ACCTTAAAGT GCTTTCATGT 37040 ||||| GTGAG..... .......... .......... .......... .......... .......... 555 GTTGAATCAA ACCAAACTGA ACTTGTTCTT CTGATTTCAA ATGTGTTACC CTTGCACAAT 37100 .......... .......... .......... .......... .......... .......... 555 ATAAATCTAA TAGGCTGATG CAGAAGGCTC AGGCATAGTT TCCCGGAGGA TGACTGGACA 37160 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCTGATG CAGAAGGCTC AGGCATAGTT TCCCGGAGGA TGACTGGACA 602 GGTTGCTGGG GTAGAACATT TTGTAATAAA AGTCGCCAAT AACAAGGTGA CTTTTACTAC 37220 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGTTGCTGGG GTAGAACATT TTGTAATAAA AGTCGCCAAT AACAAG.... .......... 648 TGTAGTTGAT TAATCATGCA ATACACTGTT TCCAGTTTAT ATTATCTCTC ATACCTATTG 37280 .......... .......... .......... .......... .......... .......... 648 AAATCCTTTA GGTTGGTCTT ATTATTTGCA AAGGAGGTGA AACCATAAAA ATATGCAAGA 37340 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTGGTCTT ATTATTTGCA AAGGAGGTGA AACCATAAAA ATATGCAAGA 697 AAAGACTAGA GCGCGTATTC ATGTAATAAT AAAATCTTCT GCAGTTAGTG TTGC-AACTT 37399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AAAGACTAGA GCGCGTATTC ATGTAATAAT AAAATCTTCT GCAGTTAGTG TTGCAAACTT 757 TCGCCATGGT AGCGATTCCC TTTTGTCAAG GTAATGATTT GCGTGGTTTT AGCATCACAT 37459 ||| |||||| |||||||||| ||||||||| TCG-CATGGT AGCGATTCCC TTTTGTCAA- .......... .......... .......... 785 ATCAGTTTAC TTGAGATTCA AAGTCATTTG TCTTACCTTT CCCAACTTGT CACAGGTGAT 37519 ||||| .......... .......... .......... .......... .......... .....GTGAT 790 TCCTCTACAC TTGCCTCCAG GTGATACATC AACA 37553 |||||||||| ||||| | |||||||||| |||| TCCTCTACAC TTGCCCTCCA GTGATACATC AACA 824 hqPGS_C08SLm0119I05.1+_SGN-E544327+ (35721 36006,36717 36985,37114 37206,37292 37429,37515 37553) ******************************************************************************** EST sequence 46 +strand 781 n (File: SGN-E544334+) 1 CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 61 AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 121 TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 181 CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 241 AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAATAAAA ACCCATTGTT 301 AATTCAACTG TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA 361 AATGCCAGAG TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA 421 CAGTCTGGAG CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT 481 AGAGGGGTTG AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT 541 GACGTTCTTT GTGAGGCTGA TGCAGAAGGC TCAGGCATAG TTTCCCGGAG GATGACTGGA 601 CAGGTTGCTG GGGTAGAACA TTTTGTAATA AAAGTCGCCA ATAACAAGGT TGGTCTTATT 661 ATTTGCAAAG GAGGTGAAAC CATAAAAATA TGCAAGAAAA GACTAGAGCG CGTATTCATG 721 TAATAATAAA AATCTCTGCA GNTAGTGTTG CAACTTTCGC CATGGTAGCG ATTCCCTTTT 781 G Predicted gene structure (within gDNA segment 35121 to 38034): Exon 1 35721 36006 ( 286 n); cDNA 1 286 ( 286 n); score: 1.000 Intron 1 36007 36716 ( 710 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 36717 36985 ( 269 n); cDNA 287 555 ( 269 n); score: 1.000 Intron 2 36986 37113 ( 128 n); Pd: 0.977 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 37114 37206 ( 93 n); cDNA 556 648 ( 93 n); score: 1.000 Intron 3 37207 37291 ( 85 n); Pd: 0.981 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 4 37292 37424 ( 133 n); cDNA 649 781 ( 133 n); score: 0.970 MATCH C08SLm0119I05.1+ SGN-E544334+ 0.995 781 1.000 C PGS_C08SLm0119I05.1+_SGN-E544334+ (35721 36006,36717 36985,37114 37206,37292 37424) Alignment (genomic DNA sequence = upper lines): CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 35780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCACACAAC AACAATGGCG GAAGAGGACG TTCATTACGC ATCAAAGGTT GGAACCAATA 60 AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 35840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGTA CAAGGAAGAA CAAACCATTT CCCGTAGACC CACTGGATTC TCTGCCATGA 120 TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 35900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCCTA ATCACCTGAT GCTTCTTACA AAACCGTTCC CAATGCCTAT GGATGATTTC 180 CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 35960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTA AGCAGAAGGA TCAGGAAATT GCCGCTAGGC TATTGAACAC CGCGGAGCCC 240 AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAATGTAA GTTTTATTTT 36020 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAAAAAGCTT GAATAGATAA CGGCTCTGGT TTTGATTCTG ACGAAT.... .......... 286 TCTTAACTCT TGTTTTCTAT TAGATAATTT TTTTTATTTT CTTCCAAATG ATTCTCCAGA 36080 .......... .......... .......... .......... .......... .......... 286 TTAGTTGTTC TCCTTTGTGA ATAAGGAGTT CAGTTAATTA AATAGAAGGA ATATAGCTAT 36140 .......... .......... .......... .......... .......... .......... 286 TGTGGTCGGT CTTATGCTCA CTTTTTTCTC CTTTTGAGAT GGTATTTGTT GTATCTATGC 36200 .......... .......... .......... .......... .......... .......... 286 CTATTTTCTT CGTAGATATT TTATTAATAG ATGGAATCGA TGAAAAAATC ATGCCTGGAA 36260 .......... .......... .......... .......... .......... .......... 286 ATTTAAATGT TTACAGTTTT CTTTCTAATC TGTTATTAAT AGTTCTTTTG TTATACTCTT 36320 .......... .......... .......... .......... .......... .......... 286 GAAAATGGTT GTGTAGTTTT TGTGCATTTA TCCATTCTTT TATCGTAAGA TAGTAAGTTT 36380 .......... .......... .......... .......... .......... .......... 286 TTGTTATTTT GAGAATCTCC CAACTTTTAC TGCACTATCA TTTACTTTGG GTCTATGTTG 36440 .......... .......... .......... .......... .......... .......... 286 ATAGTTATTT ACATGGTATT GAAATGAATG GCTGCTGCGA CTTTTTAATT TTTACCCTGA 36500 .......... .......... .......... .......... .......... .......... 286 GAATATTATG ACTTGTATTT TAATGATTTC AGGTCAGTAG TTGTATTCTG AACTTATAGT 36560 .......... .......... .......... .......... .......... .......... 286 GATAATATCA GCAGCAAATT GGTGCTTCTT CTTAGATTTA GTGCGGTCAC TTTTCCTGTG 36620 .......... .......... .......... .......... .......... .......... 286 CTTTATACCT CTTGATGTTC TTATATTCCC TCTGTAGCCA ACTTTACTTA TGAGTCCACT 36680 .......... .......... .......... .......... .......... .......... 286 TATTGTTTAC ATGTTCTGTA TTTTATTTAA TTGCAGAAAA ACCCATTGTT AATTCAACTG 36740 |||| |||||||||| |||||||||| .......... .......... .......... ......AAAA ACCCATTGTT AATTCAACTG 310 TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA AATGCCAGAG 36800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAAATTC ATATGGTTAT CCGGTGCCAA GCAAGAAGAT TGAGGTACCA AATGCCAGAG 370 TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA CAGTCTGGAG 36860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGTGAT CATAGGCAGA GGCGGGGAGA CAATCAAGTA TCTTCAACTA CAGTCTGGAG 430 CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT AGAGGGGTTG 36920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGATTCA GGTTACTCGA GACATGGATT CTGATCCAAA TTCTCGTACT AGAGGGGTTG 490 AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT GACGTTCTTT 36980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCGTGGG TACACCAGAG CAAATTTCTA AGGCTGAATA ATTAATTAGT GACGTTCTTT 550 GTGAGGTACT ATTTATTTGT CTATACCTGA ACTTAACTAT ACCTTAAAGT GCTTTCATGT 37040 ||||| GTGAG..... .......... .......... .......... .......... .......... 555 GTTGAATCAA ACCAAACTGA ACTTGTTCTT CTGATTTCAA ATGTGTTACC CTTGCACAAT 37100 .......... .......... .......... .......... .......... .......... 555 ATAAATCTAA TAGGCTGATG CAGAAGGCTC AGGCATAGTT TCCCGGAGGA TGACTGGACA 37160 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCTGATG CAGAAGGCTC AGGCATAGTT TCCCGGAGGA TGACTGGACA 602 GGTTGCTGGG GTAGAACATT TTGTAATAAA AGTCGCCAAT AACAAGGTGA CTTTTACTAC 37220 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGTTGCTGGG GTAGAACATT TTGTAATAAA AGTCGCCAAT AACAAG.... .......... 648 TGTAGTTGAT TAATCATGCA ATACACTGTT TCCAGTTTAT ATTATCTCTC ATACCTATTG 37280 .......... .......... .......... .......... .......... .......... 648 AAATCCTTTA GGTTGGTCTT ATTATTTGCA AAGGAGGTGA AACCATAAAA ATATGCAAGA 37340 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTGGTCTT ATTATTTGCA AAGGAGGTGA AACCATAAAA ATATGCAAGA 697 AAAGACTAGA GCGCGTATTC ATGTAATAAT AAAATCTTCT GCAGTTAGTG TTGCAACTTT 37400 |||||||||| |||||||||| |||||||||| |||| ||| |||| ||||| |||||||||| AAAGACTAGA GCGCGTATTC ATGTAATAAT AAAAATCTCT GCAGNTAGTG TTGCAACTTT 757 CGCCATGGTA GCGATTCCCT TTTG 37424 |||||||||| |||||||||| |||| CGCCATGGTA GCGATTCCCT TTTG 781 hqPGS_C08SLm0119I05.1+_SGN-E544334+ (35721 36006,36717 36985,37114 37206,37292 37424) ******************************************************************************** EST sequence 18 +strand 476 n (File: SGN-E306202+) 1 CCACACAACA GCAAGGGCGG AAGAGGACGT TCATTACGCA TCAAAGGTTG GAACCAATAG 61 GAGGAAGTAC AACGAAGAAC AAACCATTTG CCGTACACCC ACTGGATTCT CTGCCATGAT 121 TTCTTACTAA TCACCTGATG CTTCTTACAA AACCGTTCCC AATGCCTATG GATGATTTCC 181 AGCTTGCTAA GCAGAAGGAT CAGGAAATTG CCGCTAGGCT ATTGAACACC GCGGAGCCCA 241 AAAAAGCTTG AATAGATAAC GGCTCTGGTT TTGATTCTGA CGAATAAAAA CCCATTGTTA 301 ATTCAACTGT GACAAATTCA TATGGTTATC CGGTGCCAAG CAAGAAGATT GAGGTACCAA 361 ATGCCAGAGT TGGAGTGATC ATAGGCAGAG GCGGGGAGAC AATCAAGTAT CTTCAACTAC 421 AGTCTGGAGC CAAGATTCAC GTTACTCGAG ACATGGATTC TGATCCAAAT TCTCGT Predicted gene structure (within gDNA segment 34987 to 37517): Exon 1 35722 36006 ( 285 n); cDNA 1 285 ( 285 n); score: 0.975 Intron 1 36007 36716 ( 710 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 36717 36907 ( 191 n); cDNA 286 476 ( 191 n); score: 0.995 MATCH C08SLm0119I05.1+ SGN-E306202+ 0.983 476 1.000 C PGS_C08SLm0119I05.1+_SGN-E306202+ (35722 36006,36717 36907) Alignment (genomic DNA sequence = upper lines): CCACACAACA ACAATGGCGG AAGAGGACGT TCATTACGCA TCAAAGGTTG GAACCAATAA 35781 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| CCACACAACA GCAAGGGCGG AAGAGGACGT TCATTACGCA TCAAAGGTTG GAACCAATAG 60 GAGGAAGTAC AAGGAAGAAC AAACCATTTC CCGTAGACCC ACTGGATTCT CTGCCATGAT 35841 |||||||||| || ||||||| ||||||||| ||||| |||| |||||||||| |||||||||| GAGGAAGTAC AACGAAGAAC AAACCATTTG CCGTACACCC ACTGGATTCT CTGCCATGAT 120 TTCTTCCTAA TCACCTGATG CTTCTTACAA AACCGTTCCC AATGCCTATG GATGATTTCC 35901 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTACTAA TCACCTGATG CTTCTTACAA AACCGTTCCC AATGCCTATG GATGATTTCC 180 AGCTTGCTAA GCAGAAGGAT CAGGAAATTG CCGCTAGGCT ATTGAACACC GCGGAGCCCA 35961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGCTAA GCAGAAGGAT CAGGAAATTG CCGCTAGGCT ATTGAACACC GCGGAGCCCA 240 AAAAAGCTTG AATAGATAAC GGCTCTGGTT TTGATTCTGA CGAATGTAAG TTTTATTTTT 36021 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAAAAGCTTG AATAGATAAC GGCTCTGGTT TTGATTCTGA CGAAT..... .......... 285 CTTAACTCTT GTTTTCTATT AGATAATTTT TTTTATTTTC TTCCAAATGA TTCTCCAGAT 36081 .......... .......... .......... .......... .......... .......... 285 TAGTTGTTCT CCTTTGTGAA TAAGGAGTTC AGTTAATTAA ATAGAAGGAA TATAGCTATT 36141 .......... .......... .......... .......... .......... .......... 285 GTGGTCGGTC TTATGCTCAC TTTTTTCTCC TTTTGAGATG GTATTTGTTG TATCTATGCC 36201 .......... .......... .......... .......... .......... .......... 285 TATTTTCTTC GTAGATATTT TATTAATAGA TGGAATCGAT GAAAAAATCA TGCCTGGAAA 36261 .......... .......... .......... .......... .......... .......... 285 TTTAAATGTT TACAGTTTTC TTTCTAATCT GTTATTAATA GTTCTTTTGT TATACTCTTG 36321 .......... .......... .......... .......... .......... .......... 285 AAAATGGTTG TGTAGTTTTT GTGCATTTAT CCATTCTTTT ATCGTAAGAT AGTAAGTTTT 36381 .......... .......... .......... .......... .......... .......... 285 TGTTATTTTG AGAATCTCCC AACTTTTACT GCACTATCAT TTACTTTGGG TCTATGTTGA 36441 .......... .......... .......... .......... .......... .......... 285 TAGTTATTTA CATGGTATTG AAATGAATGG CTGCTGCGAC TTTTTAATTT TTACCCTGAG 36501 .......... .......... .......... .......... .......... .......... 285 AATATTATGA CTTGTATTTT AATGATTTCA GGTCAGTAGT TGTATTCTGA ACTTATAGTG 36561 .......... .......... .......... .......... .......... .......... 285 ATAATATCAG CAGCAAATTG GTGCTTCTTC TTAGATTTAG TGCGGTCACT TTTCCTGTGC 36621 .......... .......... .......... .......... .......... .......... 285 TTTATACCTC TTGATGTTCT TATATTCCCT CTGTAGCCAA CTTTACTTAT GAGTCCACTT 36681 .......... .......... .......... .......... .......... .......... 285 ATTGTTTACA TGTTCTGTAT TTTATTTAAT TGCAGAAAAA CCCATTGTTA ATTCAACTGT 36741 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAAAA CCCATTGTTA ATTCAACTGT 310 GACAAATTCA TATGGTTATC CGGTGCCAAG CAAGAAGATT GAGGTACCAA ATGCCAGAGT 36801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAATTCA TATGGTTATC CGGTGCCAAG CAAGAAGATT GAGGTACCAA ATGCCAGAGT 370 TGGAGTGATC ATAGGCAGAG GCGGGGAGAC AATCAAGTAT CTTCAACTAC AGTCTGGAGC 36861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTGATC ATAGGCAGAG GCGGGGAGAC AATCAAGTAT CTTCAACTAC AGTCTGGAGC 430 CAAGATTCAG GTTACTCGAG ACATGGATTC TGATCCAAAT TCTCGT 36907 ||||||||| |||||||||| |||||||||| |||||||||| |||||| CAAGATTCAC GTTACTCGAG ACATGGATTC TGATCCAAAT TCTCGT 476 hqPGS_C08SLm0119I05.1+_SGN-E306202+ (35722 36006,36717 36907) ******************************************************************************** EST sequence 11 +strand 515 n (File: SGN-E538969+) 1 TTCATTTCAA ATTATCCATG TATGAAGTAG ATGAACGCCC GCTCTTCTTT ACTTTTGCGG 61 GGAGTATTCT TATTCATTTG AATCCTGCTT TTTTCCTAGT TGTAATTAGC TCCTCTCTTC 121 TTTCTTTCAG TCATATACTT CAGTTCTATT TTCAAGTGGT TATGGAGAGT GCAGTATCCC 181 ACTCTTCAGT ACAACTCCAT ATTGATTTTG GGTAAATGGT CAAGCTATAA AACATATCTG 241 TAGTATGATA TTGTATCTTC TTATGTCAGT TTTCTGATTA GTTTCTTCAC ATGTTCATTG 301 AGGTGGTTAG GTGGTGCTGG GTTAGGTTTG TCTGAAGTAT ATGTTATGTT TAAGTTAGTA 361 TATTGATGAT GATCATACAA AAATCTGGAT AAACCCTTTA TTTTGTATAC TGATCTGATC 421 AATATTATAC TAGACTTCTG GATATTAGAG TTTGTGTGAG GCAGGATGCA ACAAGCCTAT 481 TCAGTAAGGT AAATAAAACC AATCTGAAAG TCCTC Predicted gene structure (within gDNA segment 37481 to 39295): Exon 1 38081 38595 ( 515 n); cDNA 1 515 ( 515 n); score: 0.984 MATCH C08SLm0119I05.1+ SGN-E538969+ 0.984 515 1.000 C PGS_C08SLm0119I05.1+_SGN-E538969+ (38081 38595) Alignment (genomic DNA sequence = upper lines): TTCATTTCAA ATTATCCATG TATGAAGTAG ATGAACGCCC GCTCTTCTTT ACTTTTGCGG 38140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTTCAA ATTATCCATG TATGAAGTAG ATGAACGCCC GCTCTTCTTT ACTTTTGCGG 60 GGAGTATTCT TATTCATTTG AATCCTGCTT TTTTCCTAGT TGTAATTAGC TCCTCTCTTC 38200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTATTCT TATTCATTTG AATCCTGCTT TTTTCCTAGT TGTAATTAGC TCCTCTCTTC 120 TTTCTTTCAG TCATATACTT CAGTTCTATT TTCAAGTGGT TATGGAGAGT GCAGTATCCC 38260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTCAG TCATATACTT CAGTTCTATT TTCAAGTGGT TATGGAGAGT GCAGTATCCC 180 ACTCTTCAGT ACAACTCCAT ATTGATTTTG GGTAAATGGT CAAGCTATAA AACATATCTG 38320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTCAGT ACAACTCCAT ATTGATTTTG GGTAAATGGT CAAGCTATAA AACATATCTG 240 TAGTATGATA TTGTATCTTC TTATGTCAGT TTTCTGATTA GTTTCTTCAC ATGTTCATTG 38380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATGATA TTGTATCTTC TTATGTCAGT TTTCTGATTA GTTTCTTCAC ATGTTCATTG 300 AGGTGGTTAG GTGGTGCTGG GTTAGGTTTG TCTGAAGTAT ATGTTATGTT TAAGTTATTA 38440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AGGTGGTTAG GTGGTGCTGG GTTAGGTTTG TCTGAAGTAT ATGTTATGTT TAAGTTAGTA 360 TATTGATGAT GATCATACAA AAATCTGGAT AAACCCTTTA TTTTGTATAC TGATCTGTTC 38500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TATTGATGAT GATCATACAA AAATCTGGAT AAACCCTTTA TTTTGTATAC TGATCTGATC 420 AATATTATAC TAGACTTCTG GATATTTGAT TTTGTGTGAG GCAGGTTGCA ACAAGCCTAT 38560 |||||||||| |||||||||| |||||| || |||||||||| ||||| |||| |||||||||| AATATTATAC TAGACTTCTG GATATTAGAG TTTGTGTGAG GCAGGATGCA ACAAGCCTAT 480 TCAATAAGGT AAATAAAACC AATCTAAAAT TCCTC 38595 ||| |||||| |||||||||| ||||| ||| ||||| TCAGTAAGGT AAATAAAACC AATCTGAAAG TCCTC 515 hqPGS_C08SLm0119I05.1+_SGN-E538969+ (38081 38595) ******************************************************************************** EST sequence 15 +strand 522 n (File: SGN-E278014+) 1 TCATTTCAAA TTATCCATGT ATGAAGTAGA TGAACGCCCG CTCTTCTTTA CTTTTGCGGG 61 GAGTATTCTT ATTCATTTGA ATCCTGCTTT TTTCCTAGTT GTAATTAGCT CCTCTCTTCT 121 TTCTTTCAGT CATATACTTC AGTTCTATTT TCAAGTGGTT ATGGAGAGTG CAGTATCCCA 181 CTCTTCAGTA CAACTCCATA TTGATTTTGG GTAAATGGTC AAGCTATAAA ACATATCTGT 241 AGTATGATAT TGTATCTTCT TATGTCAGTT TTCTGATTAG TTTCTTCACA TGTTCATTGA 301 GGTGGTTAGG TGGTGCTGGG TTAGGTTTGT CTGAAGTATA TGTTATGTTT AAGTTATTAT 361 ATTGATGATG ATCATACAAA AATCTGGATA AACCCTTTAT TTTGTATACT GATCTGTTCA 421 ATATTATACT AGACTTCTGG ATATTTGATT TTGTGTGAGG CAGGTTGCAA CAAGCCTATT 481 CAATAAGGTA AATAAAACCA ATCTAAAATT CCTCTAATAT TA Predicted gene structure (within gDNA segment 37482 to 39213): Exon 1 38082 38603 ( 522 n); cDNA 1 522 ( 522 n); score: 1.000 MATCH C08SLm0119I05.1+ SGN-E278014+ 1.000 522 1.000 C PGS_C08SLm0119I05.1+_SGN-E278014+ (38082 38603) Alignment (genomic DNA sequence = upper lines): TCATTTCAAA TTATCCATGT ATGAAGTAGA TGAACGCCCG CTCTTCTTTA CTTTTGCGGG 38141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCAAA TTATCCATGT ATGAAGTAGA TGAACGCCCG CTCTTCTTTA CTTTTGCGGG 60 GAGTATTCTT ATTCATTTGA ATCCTGCTTT TTTCCTAGTT GTAATTAGCT CCTCTCTTCT 38201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTATTCTT ATTCATTTGA ATCCTGCTTT TTTCCTAGTT GTAATTAGCT CCTCTCTTCT 120 TTCTTTCAGT CATATACTTC AGTTCTATTT TCAAGTGGTT ATGGAGAGTG CAGTATCCCA 38261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTCAGT CATATACTTC AGTTCTATTT TCAAGTGGTT ATGGAGAGTG CAGTATCCCA 180 CTCTTCAGTA CAACTCCATA TTGATTTTGG GTAAATGGTC AAGCTATAAA ACATATCTGT 38321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTCAGTA CAACTCCATA TTGATTTTGG GTAAATGGTC AAGCTATAAA ACATATCTGT 240 AGTATGATAT TGTATCTTCT TATGTCAGTT TTCTGATTAG TTTCTTCACA TGTTCATTGA 38381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATAT TGTATCTTCT TATGTCAGTT TTCTGATTAG TTTCTTCACA TGTTCATTGA 300 GGTGGTTAGG TGGTGCTGGG TTAGGTTTGT CTGAAGTATA TGTTATGTTT AAGTTATTAT 38441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTTAGG TGGTGCTGGG TTAGGTTTGT CTGAAGTATA TGTTATGTTT AAGTTATTAT 360 ATTGATGATG ATCATACAAA AATCTGGATA AACCCTTTAT TTTGTATACT GATCTGTTCA 38501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATGATG ATCATACAAA AATCTGGATA AACCCTTTAT TTTGTATACT GATCTGTTCA 420 ATATTATACT AGACTTCTGG ATATTTGATT TTGTGTGAGG CAGGTTGCAA CAAGCCTATT 38561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTATACT AGACTTCTGG ATATTTGATT TTGTGTGAGG CAGGTTGCAA CAAGCCTATT 480 CAATAAGGTA AATAAAACCA ATCTAAAATT CCTCTAATAT TA 38603 |||||||||| |||||||||| |||||||||| |||||||||| || CAATAAGGTA AATAAAACCA ATCTAAAATT CCTCTAATAT TA 522 hqPGS_C08SLm0119I05.1+_SGN-E278014+ (38082 38603) ******************************************************************************** EST sequence 16 +strand 246 n (File: SGN-E340855+) 1 TTTGATTTTG TGTGAGGCAG GTTGCAACAA GCCTATTCAA TAAGGTAAAT AAAACCAATC 61 TAAAATTCCT CTAATATTAA GGTTATCAAA CTCAACCTCC AGAAAGCTGG AGGATATCCT 121 CAAAAAAGTT ATCAAACTCA ACCTCCTACA AGCTGGGCTC CTCCTGGTGC GCAGTTGCAA 181 CAACATGGTT ATGGTTACCT CCAACCTGGA ACATATCCAC GTCCATCTCC CCAATATAAC 241 ACGTCT Predicted gene structure (within gDNA segment 37925 to 39380): Exon 1 38525 38770 ( 246 n); cDNA 1 246 ( 246 n); score: 1.000 MATCH C08SLm0119I05.1+ SGN-E340855+ 1.000 246 1.000 C PGS_C08SLm0119I05.1+_SGN-E340855+ (38525 38770) Alignment (genomic DNA sequence = upper lines): TTTGATTTTG TGTGAGGCAG GTTGCAACAA GCCTATTCAA TAAGGTAAAT AAAACCAATC 38584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATTTTG TGTGAGGCAG GTTGCAACAA GCCTATTCAA TAAGGTAAAT AAAACCAATC 60 TAAAATTCCT CTAATATTAA GGTTATCAAA CTCAACCTCC AGAAAGCTGG AGGATATCCT 38644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTCCT CTAATATTAA GGTTATCAAA CTCAACCTCC AGAAAGCTGG AGGATATCCT 120 CAAAAAAGTT ATCAAACTCA ACCTCCTACA AGCTGGGCTC CTCCTGGTGC GCAGTTGCAA 38704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAAGTT ATCAAACTCA ACCTCCTACA AGCTGGGCTC CTCCTGGTGC GCAGTTGCAA 180 CAACATGGTT ATGGTTACCT CCAACCTGGA ACATATCCAC GTCCATCTCC CCAATATAAC 38764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATGGTT ATGGTTACCT CCAACCTGGA ACATATCCAC GTCCATCTCC CCAATATAAC 240 ACGTCT 38770 |||||| ACGTCT 246 hqPGS_C08SLm0119I05.1+_SGN-E340855+ (38525 38770) ******************************************************************************** EST sequence 37 +strand 596 n (File: SGN-E244337+) 1 TAATATTAAG GTTATCAAAC TCAACCTCCA GAAAGCTGGA GGATATCCTC AAAAAAGTTA 61 TCAAACTCAA CCTCCTACAA GCTGGGCTCC TCCTGGTGCG CAGTTGCAAC AACATGGTTA 121 TGGTTACCTC CAACCTGGAA CATATCCACG TCCATCTCCC CAATATAACA CGTCTCAATC 181 AGCCTACCTA GTTACCCTCC ACAACAGGCC TCTGGTGGAT ATGCATCTGG TTGGGATCAA 241 ACAACTTCAC CAAACCAGCA AACGTCTCAG GCAGGTGGTT ATGATTACTA TAGTCAGCAG 301 GCACCCTCAC AACAGCAACA AACACCTGGA GGTTCAGCAT CTTCAACTGA TACTACTGCC 361 TATGGTTAAA ATCAGCCTTC AGCCACAAGT TACAACCAGG GACAAATTTA CTCCCAAGAT 421 GGCTATGGTG GATATCATGC ACCTGCTACT CAATCGGTCA TCAGGGTACT GGTTATGATC 481 AGCAACAAGG TTATAGTGCT ACTCCGAGCT ATGGGAATGT ACCGAACCCT ACTTCTGATG 541 GCCACAACAC TTCACATGGT AGTGATGGCA GTCAAGCACC TGCACCAGGT CAGTCA Predicted gene structure (within gDNA segment 37996 to 39801): Exon 1 38596 39191 ( 596 n); cDNA 1 596 ( 596 n); score: 1.000 MATCH C08SLm0119I05.1+ SGN-E244337+ 1.000 596 1.000 C PGS_C08SLm0119I05.1+_SGN-E244337+ (38596 39191) Alignment (genomic DNA sequence = upper lines): TAATATTAAG GTTATCAAAC TCAACCTCCA GAAAGCTGGA GGATATCCTC AAAAAAGTTA 38655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATTAAG GTTATCAAAC TCAACCTCCA GAAAGCTGGA GGATATCCTC AAAAAAGTTA 60 TCAAACTCAA CCTCCTACAA GCTGGGCTCC TCCTGGTGCG CAGTTGCAAC AACATGGTTA 38715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAACTCAA CCTCCTACAA GCTGGGCTCC TCCTGGTGCG CAGTTGCAAC AACATGGTTA 120 TGGTTACCTC CAACCTGGAA CATATCCACG TCCATCTCCC CAATATAACA CGTCTCAATC 38775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTACCTC CAACCTGGAA CATATCCACG TCCATCTCCC CAATATAACA CGTCTCAATC 180 AGCCTACCTA GTTACCCTCC ACAACAGGCC TCTGGTGGAT ATGCATCTGG TTGGGATCAA 38835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTACCTA GTTACCCTCC ACAACAGGCC TCTGGTGGAT ATGCATCTGG TTGGGATCAA 240 ACAACTTCAC CAAACCAGCA AACGTCTCAG GCAGGTGGTT ATGATTACTA TAGTCAGCAG 38895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACTTCAC CAAACCAGCA AACGTCTCAG GCAGGTGGTT ATGATTACTA TAGTCAGCAG 300 GCACCCTCAC AACAGCAACA AACACCTGGA GGTTCAGCAT CTTCAACTGA TACTACTGCC 38955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCCTCAC AACAGCAACA AACACCTGGA GGTTCAGCAT CTTCAACTGA TACTACTGCC 360 TATGGTTAAA ATCAGCCTTC AGCCACAAGT TACAACCAGG GACAAATTTA CTCCCAAGAT 39015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTTAAA ATCAGCCTTC AGCCACAAGT TACAACCAGG GACAAATTTA CTCCCAAGAT 420 GGCTATGGTG GATATCATGC ACCTGCTACT CAATCGGTCA TCAGGGTACT GGTTATGATC 39075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTATGGTG GATATCATGC ACCTGCTACT CAATCGGTCA TCAGGGTACT GGTTATGATC 480 AGCAACAAGG TTATAGTGCT ACTCCGAGCT ATGGGAATGT ACCGAACCCT ACTTCTGATG 39135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACAAGG TTATAGTGCT ACTCCGAGCT ATGGGAATGT ACCGAACCCT ACTTCTGATG 540 GCCACAACAC TTCACATGGT AGTGATGGCA GTCAAGCACC TGCACCAGGT CAGTCA 39191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCCACAACAC TTCACATGGT AGTGATGGCA GTCAAGCACC TGCACCAGGT CAGTCA 596 hqPGS_C08SLm0119I05.1+_SGN-E244337+ (38596 39191) ******************************************************************************** EST sequence 60 +strand 517 n (File: SGN-E331195+) 1 TCTCAATCAT CCTACCTAGT TACCCTCCAC AACAGGCCTC TGGTGGATAT GCATCTGGTT 61 GGGATCAAAC AACTTCACCA AACCAGCAAA CGTCTCAGGC AGGTGGTTAT GATTACTATA 121 GTCAGCAGGC ACCCTCACAA CAGCAACAAA CACCTGGAGG TTCAGCATCT TCAACTGATA 181 CTACTGCCTA TGGTTAAAAT CAGCCTTCAG CCACAAGTTA CAACCAGGGA CAAATTTACT 241 CCCAAGATGG CTATGGTGGA TATCATGCAC CTGCTACTCA ATCGGTCATC AGGGTACTGG 301 TTATGATCAG CAACAAGGTT ATAGTGCTAC TCCGAGCTAT GGGAATGTAC CGAACCCTAC 361 TTCTGATGGC CACAACACTT CACATGGTAG TGATGGCAGT CAAGCACCTG CACCAGGTCA 421 GTCATCAGTG GGCCAACAAG GCTATCAGTC TGGCCAGCAG CCCAGCCCTA CTCCTAGTTA 481 CCCATCTCAA GTCTCTACTC AATTTGGGTA TGGGATG Predicted gene structure (within gDNA segment 38078 to 39894): Exon 1 38768 39284 ( 517 n); cDNA 1 517 ( 517 n); score: 0.998 MATCH C08SLm0119I05.1+ SGN-E331195+ 0.998 517 1.000 C PGS_C08SLm0119I05.1+_SGN-E331195+ (38768 39284) Alignment (genomic DNA sequence = upper lines): TCTCAATCAG CCTACCTAGT TACCCTCCAC AACAGGCCTC TGGTGGATAT GCATCTGGTT 38827 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAATCAT CCTACCTAGT TACCCTCCAC AACAGGCCTC TGGTGGATAT GCATCTGGTT 60 GGGATCAAAC AACTTCACCA AACCAGCAAA CGTCTCAGGC AGGTGGTTAT GATTACTATA 38887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATCAAAC AACTTCACCA AACCAGCAAA CGTCTCAGGC AGGTGGTTAT GATTACTATA 120 GTCAGCAGGC ACCCTCACAA CAGCAACAAA CACCTGGAGG TTCAGCATCT TCAACTGATA 38947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGCAGGC ACCCTCACAA CAGCAACAAA CACCTGGAGG TTCAGCATCT TCAACTGATA 180 CTACTGCCTA TGGTTAAAAT CAGCCTTCAG CCACAAGTTA CAACCAGGGA CAAATTTACT 39007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTGCCTA TGGTTAAAAT CAGCCTTCAG CCACAAGTTA CAACCAGGGA CAAATTTACT 240 CCCAAGATGG CTATGGTGGA TATCATGCAC CTGCTACTCA ATCGGTCATC AGGGTACTGG 39067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAGATGG CTATGGTGGA TATCATGCAC CTGCTACTCA ATCGGTCATC AGGGTACTGG 300 TTATGATCAG CAACAAGGTT ATAGTGCTAC TCCGAGCTAT GGGAATGTAC CGAACCCTAC 39127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGATCAG CAACAAGGTT ATAGTGCTAC TCCGAGCTAT GGGAATGTAC CGAACCCTAC 360 TTCTGATGGC CACAACACTT CACATGGTAG TGATGGCAGT CAAGCACCTG CACCAGGTCA 39187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGATGGC CACAACACTT CACATGGTAG TGATGGCAGT CAAGCACCTG CACCAGGTCA 420 GTCATCAGTG GGCCAACAAG GCTATCAGTC TGGCCAGCAG CCCAGCCCTA CTCCTAGTTA 39247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCAGTG GGCCAACAAG GCTATCAGTC TGGCCAGCAG CCCAGCCCTA CTCCTAGTTA 480 CCCATCTCAA GTCTCTACTC AATTTGGGTA TGGGATG 39284 |||||||||| |||||||||| |||||||||| ||||||| CCCATCTCAA GTCTCTACTC AATTTGGGTA TGGGATG 517 hqPGS_C08SLm0119I05.1+_SGN-E331195+ (38768 39284) ******************************************************************************** EST sequence 99 -strand 691 n (File: SGN-E549024-) 1 TGGGTATGGG ATGCCACCTA TTTCCCAAGA TGGTTATGGT ACCTAGTCCC CAACAGGTTA 61 TGGCACCCAG CCAGCAGCAG GTTATAGGTC CCCTCAAGCC CAAAAGCCTC CGACTAGTCA 121 TCTAGCTTAT GGTCAGCCTC AGCAATCTTC TAGTGCACAA GGTGGCTATA CCCAACCTCC 181 ACCCGTGCAG CCCGGGTATC CACAAGCAGC AACTGCTCAA TCAGGTTATG GTCAAGGTGA 241 ATCTGGGACT CAGCGACCTC CATCCTCTTA TGGCCCTCCA ACAGCTCACC CTTGGTATAG 301 GGCTGCTAGC TATGGGCAGT TGCCACCACC TTACAGTAGT GGCTATGCTG GCAGTAATGT 361 GCAGCCTCCG GCAACGTACT CTACTGATGG CAATGGTGGT GCAAATCCAA AAATCCCAGT 421 CTATTCAACC TAGTAATGAG GGGGTTCCAA AAGCCCCACC TCAAAGTTAA TGGATGCTAC 481 TTGGAAGGAT CAAATGATAG CTAGCTCCCT TATATATTGT TTCCTTATTT TGTTATGCTT 541 TACTTTGGTA TTATGTTAGG TTTCTGGTGC ATTAAGAGAG TCTGAAACTT CAGTTTGTTT 601 GTCTCTTTGA GTACCTATGT GATCATACTG GTCAAACCTT TTTTCTTCTT TCTAATATAA 661 GAACTCTTAA AAGGGAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 38662 to 40715): Exon 1 39272 39945 ( 674 n); cDNA 1 674 ( 674 n); score: 0.997 PPA cDNA 676 691 MATCH C08SLm0119I05.1+ SGN-E549024- 0.997 674 0.975 C PGS_C08SLm0119I05.1+_SGN-E549024- (39272 39945) Alignment (genomic DNA sequence = upper lines): TGGGTATGGG ATGCCACCTA CTTCCCAAGA TGGTTATGGT ACCTAGTCAC CAACAGGTTA 39331 |||||||||| |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| TGGGTATGGG ATGCCACCTA TTTCCCAAGA TGGTTATGGT ACCTAGTCCC CAACAGGTTA 60 TGGCACCCAG CCAGCAGCAG GTTATAGGTC CCCTCAAGCC CAAAAGCCTC CGACTAGTCA 39391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACCCAG CCAGCAGCAG GTTATAGGTC CCCTCAAGCC CAAAAGCCTC CGACTAGTCA 120 TCTAGCTTAT GGTCAGCCTC AGCAATCTTC TAGTGCACAA GGTGGCTATA CCCAACCTCC 39451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGCTTAT GGTCAGCCTC AGCAATCTTC TAGTGCACAA GGTGGCTATA CCCAACCTCC 180 ACCCGTGCAG CCCGGGTATC CACAAGCAGC AACTGCTCAA TCAGGTTATG GTCAAGGTGA 39511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCGTGCAG CCCGGGTATC CACAAGCAGC AACTGCTCAA TCAGGTTATG GTCAAGGTGA 240 ATCTGGGACT CAGCGACCTC CATCCTCTTA TGGCCCTCCA ACAGCTCACC CTTGGTATAG 39571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGGACT CAGCGACCTC CATCCTCTTA TGGCCCTCCA ACAGCTCACC CTTGGTATAG 300 GGCTGCTAGC TATGGGCAGT TGCCACCACC TTACAGTAGT GGCTATGCTG GCAGTAATGT 39631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGCTAGC TATGGGCAGT TGCCACCACC TTACAGTAGT GGCTATGCTG GCAGTAATGT 360 GCAGCCTCCG GCAACGTACT CTACTGATGG CAATGGTGGT GCAAATCCAA AAATCCCAGT 39691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCTCCG GCAACGTACT CTACTGATGG CAATGGTGGT GCAAATCCAA AAATCCCAGT 420 CTATTCAACC TAGTAATGAG GGGGTTCCAA AAGCCCCACC TCAAAGTTAA TGGATGCTAC 39751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCAACC TAGTAATGAG GGGGTTCCAA AAGCCCCACC TCAAAGTTAA TGGATGCTAC 480 TTGGAAGGAT CAAATGATAG CTAGCTCCCT TATATATTGT TTCCTTATTT TGTTATGCTT 39811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAAGGAT CAAATGATAG CTAGCTCCCT TATATATTGT TTCCTTATTT TGTTATGCTT 540 TACTTTGGTA TTATGTTAGG TTTCTGGTGC ATTAAGAGAG TCTGAAACTT CAGTTTGTTT 39871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTGGTA TTATGTTAGG TTTCTGGTGC ATTAAGAGAG TCTGAAACTT CAGTTTGTTT 600 GTCTCTTTGA GTACCTATGT GATCATACTG GTCAAACCTT TTTTCTTCTT TCTAATATAA 39931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCTTTGA GTACCTATGT GATCATACTG GTCAAACCTT TTTTCTTCTT TCTAATATAA 660 GAACTCTTAA AAGG 39945 |||||||||| |||| GAACTCTTAA AAGG 674 hqPGS_C08SLm0119I05.1+_SGN-E549024- (39272 39945) ******************************************************************************** EST sequence 100 -strand 613 n (File: SGN-E544333-) 1 ATGGCACCCA GCCAGCAGCA GGTTATAGGT CCCCTCAAGC CCAAAAGCCT CCGACTAGTC 61 ATCTAGCTTA TGGTCAGCCT CAGCAATCTT CTAGTGCACA AGGTGGCTAT ACCCAACCTC 121 CACCCGTGCA GCCCGGGTAT CCACAAGCAG CAACTGCTCA ATCAGGTTAT GGTCAAGGTG 181 AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC AACAGCTCAC CCTTGGTATA 241 GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG TGGCTATGCT GGCAGTAATG 301 TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG TGCAAATCCA AAAATCCCAG 361 TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC CTCAAAGTTA ATGGATGCTA 421 CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG TTTCCTTATT TTGTTATGCT 481 TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA GTCTGAAACT TCAGTTTGTT 541 TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT TTTTTCTTCT TTCTAATATA 601 AGAACTCTTA AAA Predicted gene structure (within gDNA segment 38721 to 40543): Exon 1 39331 39943 ( 613 n); cDNA 1 613 ( 613 n); score: 1.000 MATCH C08SLm0119I05.1+ SGN-E544333- 1.000 613 1.000 C PGS_C08SLm0119I05.1+_SGN-E544333- (39331 39943) Alignment (genomic DNA sequence = upper lines): ATGGCACCCA GCCAGCAGCA GGTTATAGGT CCCCTCAAGC CCAAAAGCCT CCGACTAGTC 39390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACCCA GCCAGCAGCA GGTTATAGGT CCCCTCAAGC CCAAAAGCCT CCGACTAGTC 60 ATCTAGCTTA TGGTCAGCCT CAGCAATCTT CTAGTGCACA AGGTGGCTAT ACCCAACCTC 39450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTAGCTTA TGGTCAGCCT CAGCAATCTT CTAGTGCACA AGGTGGCTAT ACCCAACCTC 120 CACCCGTGCA GCCCGGGTAT CCACAAGCAG CAACTGCTCA ATCAGGTTAT GGTCAAGGTG 39510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCCGTGCA GCCCGGGTAT CCACAAGCAG CAACTGCTCA ATCAGGTTAT GGTCAAGGTG 180 AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC AACAGCTCAC CCTTGGTATA 39570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC AACAGCTCAC CCTTGGTATA 240 GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG TGGCTATGCT GGCAGTAATG 39630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG TGGCTATGCT GGCAGTAATG 300 TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG TGCAAATCCA AAAATCCCAG 39690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG TGCAAATCCA AAAATCCCAG 360 TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC CTCAAAGTTA ATGGATGCTA 39750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC CTCAAAGTTA ATGGATGCTA 420 CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG TTTCCTTATT TTGTTATGCT 39810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG TTTCCTTATT TTGTTATGCT 480 TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA GTCTGAAACT TCAGTTTGTT 39870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA GTCTGAAACT TCAGTTTGTT 540 TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT TTTTTCTTCT TTCTAATATA 39930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT TTTTTCTTCT TTCTAATATA 600 AGAACTCTTA AAA 39943 |||||||||| ||| AGAACTCTTA AAA 613 hqPGS_C08SLm0119I05.1+_SGN-E544333- (39331 39943) ******************************************************************************** EST sequence 65 -strand 554 n (File: SGN-E547714-) 1 AAGGTGGCTA TGCCCAACCT CCACCGGTGC AGCCCAGGTA TCCACAGGCA GCAACTGCTC 61 AATCAGGTTA TGGTCAAGGT GAATCTGGGA CTCAGCGACC TCCATCCTCT TATGGCCCTC 121 CAACAGCTCA CCCTGGGTAT AGGGCTGCTA ACTGTGGACA GCTGCCACCC CCTTACAGTA 181 GAGGCTATGC TGGCAGTAAT GTGCAGCCTC CGGCAGCGTA CTCTACTGAT GGCAATGGTG 241 GTGCAAATCC AAAAATCCCA GTCTGTTCAA CCTAGTAATG AGGGGGTTCC AAAAGCCCCC 301 CCTCAGAGTT AATGGATGCT ACTTGGAAGG ATCAAGTGAT AGCTAGCTCC CTTATATATT 361 GTTTCCTTAT TTTGTTATGC TTTACTTTGG TATTATGTTA GGTTTCTGGT GCATTAAGAG 421 AGTCTGAAAC TTCAGTTTGT TTGTCTCTTT GAGTACCTAT GTGATCATGC TGGTCAAACC 481 TTTTTTCTTC TTTCTAATAT AAGAACTCTT AAAAGGAAAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 38397 to 40916): Exon 1 39430 39945 ( 516 n); cDNA 1 516 ( 516 n); score: 0.967 PPA cDNA 517 554 MATCH C08SLm0119I05.1+ SGN-E547714- 0.967 516 0.931 C PGS_C08SLm0119I05.1+_SGN-E547714- (39430 39945) Alignment (genomic DNA sequence = upper lines): AAGGTGGCTA TACCCAACCT CCACCCGTGC AGCCCGGGTA TCCACAAGCA GCAACTGCTC 39489 |||||||||| | |||||||| ||||| |||| ||||| |||| |||||| ||| |||||||||| AAGGTGGCTA TGCCCAACCT CCACCGGTGC AGCCCAGGTA TCCACAGGCA GCAACTGCTC 60 AATCAGGTTA TGGTCAAGGT GAATCTGGGA CTCAGCGACC TCCATCCTCT TATGGCCCTC 39549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAGGTTA TGGTCAAGGT GAATCTGGGA CTCAGCGACC TCCATCCTCT TATGGCCCTC 120 CAACAGCTCA CCCTTGGTAT AGGGCTGCTA GCTATGGGCA GTTGCCACCA CCTTACAGTA 39609 |||||||||| |||| ||||| |||||||||| || ||| || | ||||||| |||||||||| CAACAGCTCA CCCTGGGTAT AGGGCTGCTA ACTGTGGACA GCTGCCACCC CCTTACAGTA 180 GTGGCTATGC TGGCAGTAAT GTGCAGCCTC CGGCAACGTA CTCTACTGAT GGCAATGGTG 39669 | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GAGGCTATGC TGGCAGTAAT GTGCAGCCTC CGGCAGCGTA CTCTACTGAT GGCAATGGTG 240 GTGCAAATCC AAAAATCCCA GTCTATTCAA CCTAGTAATG AGGGGGTTCC AAAAGCCCCA 39729 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| GTGCAAATCC AAAAATCCCA GTCTGTTCAA CCTAGTAATG AGGGGGTTCC AAAAGCCCCC 300 CCTCAAAGTT AATGGATGCT ACTTGGAAGG ATCAAATGAT AGCTAGCTCC CTTATATATT 39789 ||||| |||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CCTCAGAGTT AATGGATGCT ACTTGGAAGG ATCAAGTGAT AGCTAGCTCC CTTATATATT 360 GTTTCCTTAT TTTGTTATGC TTTACTTTGG TATTATGTTA GGTTTCTGGT GCATTAAGAG 39849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCTTAT TTTGTTATGC TTTACTTTGG TATTATGTTA GGTTTCTGGT GCATTAAGAG 420 AGTCTGAAAC TTCAGTTTGT TTGTCTCTTT GAGTACCTAT GTGATCATAC TGGTCAAACC 39909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AGTCTGAAAC TTCAGTTTGT TTGTCTCTTT GAGTACCTAT GTGATCATGC TGGTCAAACC 480 TTTTTTCTTC TTTCTAATAT AAGAACTCTT AAAAGG 39945 |||||||||| |||||||||| |||||||||| |||||| TTTTTTCTTC TTTCTAATAT AAGAACTCTT AAAAGG 516 hqPGS_C08SLm0119I05.1+_SGN-E547714- (39430 39945) ******************************************************************************** EST sequence 72 -strand 478 n (File: SGN-E548143-) 1 ATCAGGTTAT GGTCAAAGTG AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC 61 AACAGCTCAC CCTTGGTATA GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG 121 TGGCTATGCT GGCAGTAATG TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG 181 TGCAAATCCA AAAATCCCAG TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC 241 CTCAAAGTTA ATGGATGCTA CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG 301 TTTCCTTATT TTGTTATGCT TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA 361 GTCTGAAACT TCAGTTTGTT TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT 421 TTTTTCTTCT TTCTAATATA AGAACTCTTA AAAGGAAAAA AAAAAAAAAA AAAAGAAA Predicted gene structure (within gDNA segment 38881 to 40766): Exon 1 39491 39945 ( 455 n); cDNA 1 455 ( 455 n); score: 0.998 PPA cDNA 456 478 MATCH C08SLm0119I05.1+ SGN-E548143- 0.998 455 0.952 C PGS_C08SLm0119I05.1+_SGN-E548143- (39491 39945) Alignment (genomic DNA sequence = upper lines): ATCAGGTTAT GGTCAAGGTG AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC 39550 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGTTAT GGTCAAAGTG AATCTGGGAC TCAGCGACCT CCATCCTCTT ATGGCCCTCC 60 AACAGCTCAC CCTTGGTATA GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG 39610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGCTCAC CCTTGGTATA GGGCTGCTAG CTATGGGCAG TTGCCACCAC CTTACAGTAG 120 TGGCTATGCT GGCAGTAATG TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG 39670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTATGCT GGCAGTAATG TGCAGCCTCC GGCAACGTAC TCTACTGATG GCAATGGTGG 180 TGCAAATCCA AAAATCCCAG TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC 39730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATCCA AAAATCCCAG TCTATTCAAC CTAGTAATGA GGGGGTTCCA AAAGCCCCAC 240 CTCAAAGTTA ATGGATGCTA CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG 39790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAGTTA ATGGATGCTA CTTGGAAGGA TCAAATGATA GCTAGCTCCC TTATATATTG 300 TTTCCTTATT TTGTTATGCT TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA 39850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCTTATT TTGTTATGCT TTACTTTGGT ATTATGTTAG GTTTCTGGTG CATTAAGAGA 360 GTCTGAAACT TCAGTTTGTT TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT 39910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGAAACT TCAGTTTGTT TGTCTCTTTG AGTACCTATG TGATCATACT GGTCAAACCT 420 TTTTTCTTCT TTCTAATATA AGAACTCTTA AAAGG 39945 |||||||||| |||||||||| |||||||||| ||||| TTTTTCTTCT TTCTAATATA AGAACTCTTA AAAGG 455 hqPGS_C08SLm0119I05.1+_SGN-E548143- (39491 39945) ******************************************************************************** EST sequence 89 -strand 676 n (File: SGN-E542836-) 1 AAAATGATGA CTAAGAAAAT CATTATATTT TTGATGAAAA TGTCTGAAAA TTCATCATAT 61 TGAATTTGCT CCATTCCTTG AAAAGAATGT GGTAGCAACA TGTGATAACT CTGAAATCCG 121 CCTGTTGACT TGCTCCATTC AATCATATGA ATGTGGTAGC AGTGAATGAT TAGTCTGAAA 181 GATGACAAAT AATTAATGAT ATGAATAAAG GCGTGGAAGG ACAGAATTAT AATAGTCATC 241 ATTGTGGTAA TGATAAAAGG AATAACAATA TGAGTTCTTC AAATAGTCCT TCAAAATGTG 301 AAGACAATTT TTATTATGAA AATGGTATGA AAAGTCATTA GACTTGTGAA TGTTGTCAAC 361 CCAATAACTT GACAAGTTTA TAAATCCTCT ATCATGATAT AAGAAGATAA AGTGATGGTA 421 CACTTTATCT TTCAAAGTGA TGTTGAGGTG TGTCATGGAA ATATGATGAA TTTTAAAGTC 481 ATGACAATGT GCTTATAATG CAAATTTATA AAGTACATAT GAATAATTAG TCCAATCTTT 541 GAAGAGAATG TGACTTGTAA TGAGTATCGT GAATGCTCGA CCATTCTATA AGAGAATGGG 601 TCCAGATGTG ATAAAATCAT TATGGGTTGG ATATATGTCA CAACTCACCT CTATAGAAGG 661 TTTGAAAAAA AAAAAA Predicted gene structure (within gDNA segment 37577 to 42585): Exon 1 41317 41389 ( 73 n); cDNA 103 172 ( 70 n); score: 0.658 Intron 1 41390 41419 ( 30 n); Pd: 0.000 (s: 0.62), Pa: 0.905 (s: 0.77) ?? Exon 2 41420 41918 ( 499 n); cDNA 173 672 ( 500 n); score: 0.881 MATCH C08SLm0119I05.1+ SGN-E542836- 0.852 572 0.846 C PGS_C08SLm0119I05.1+_SGN-E542836- (41317 41389,41420 41918) Alignment (genomic DNA sequence = upper lines): TGAAAAGTCA TGAAATTCGT CCCATCGAAT TTGTTTCATT TCTTGAATAG AATGTGGTAG 41376 ||| || || |||||| || || | || | | | | |||| | | | |||||||||| TGATAACTC- TGAAATCCG- CCTGTTGACT T-GCTCCATT CAATCATATG AATGTGGTAG 159 TAACATATGA TAACTTTGAA ATCCACATGT TGACCTGCTC CAG-TCTAAC AGATGACAAA 41435 | |||| | | ||| | |||||||||| CAGTGAATGA TTA....... .......... .......... ...GTCTGAA AGATGACAAA 189 TGATTAACGA TATGAAAAGA GGCGTGAAGG GATGAAATTA TAATAGTCAT CATTGTGGTA 41495 | ||||| || |||||| | | |||||| | | || ||||| |||||||||| |||||||||| TAATTAATGA TATGAATAAA GGCGTGGAAG GACAGAATTA TAATAGTCAT CATTGTGGTA 249 ATTATAAAAG GAAGAACATT ATCGGTTCTC CAAATAGTCC ATCAAAATGT GAAGGCAATT 41555 || ||||||| ||| |||| | || ||||| |||||||||| ||||||||| |||| ||||| ATGATAAAAG GAATAACAAT ATGAGTTCTT CAAATAGTCC TTCAAAATGT GAAGACAATT 309 TTTGTTATCA AAATGGTACG AAAGGTCATT GGACTTGTGA ATGTTGTCGC CTCAATAATT 41615 ||| |||| | |||||||| | ||| |||||| ||||||||| |||||||| | |||||| | TTTATTATGA AAATGGTATG AAAAGTCATT AGACTTGTGA ATGTTGTCAA CCCAATAACT 369 TGACAAGTTT ATAAATCCTC CATCAAAAGA CAAGAAGATA AAGTGATGGT ACACTTAATC 41675 |||||||||| |||||||||| |||| | | ||||||||| |||||||||| |||||| ||| TGACAAGTTT ATAAATCCTC TATCATGATA TAAGAAGATA AAGTGATGGT ACACTTTATC 429 TTTCAAGGTG ATGTTGAGGT GTTTCATGGA AATATGATGA ATTTTAAAGC CATGACAATG 41735 |||||| ||| |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| TTTCAAAGTG ATGTTGAGGT GTGTCATGGA AATATGATGA ATTTTAAAGT CATGACAATG 489 TGCTTATAAT GCAAATTTAT GAATTACATA TAAAGGATTA GTCCATTCCT TGAAGAGAAT 41795 |||||||||| |||||||||| || |||||| | || |||| ||||| || | |||||||||| TGCTTATAAT GCAAATTTAT AAAGTACATA TGAATAATTA GTCCAATCTT TGAAGAGAAT 549 GTGACTTGTG ATGAGTATCG TAAAAACTCA ACCATTCTAT ATAAGAATGG GTCAAGATGT 41855 ||||||||| |||||||||| | || ||| |||||||||| | ||||||| ||| |||||| GTGACTTGTA ATGAGTATCG TGAATGCTCG ACCATTCTAT AAGAGAATGG GTCCAGATGT 609 GATAAAATCA TTATGGGTTG GATATATGCA ACAACTCACC TCTATGGGAG GTTTGGAAAA 41915 |||||||||| |||||||||| |||||||| |||||||||| ||||| | || ||||| |||| GATAAAATCA TTATGGGTTG GATATATGTC ACAACTCACC TCTATAGAAG GTTTGAAAAA 669 AAA 41918 ||| AAA 672 hqPGS_C08SLm0119I05.1+_SGN-E542836- (41420 41918) ******************************************************************************** EST sequence 45 +strand 767 n (File: SGN-E354965+) 1 GATAAGACGA TAGATTCAAG TTCTATCTCA CCAAAAGGGT AAGACATCAA TTAGAGTTTT 61 GATACACCGT GATTGGGTTC AAGTTCCATA GAATTATGGC GTAACACGCC TTACATGGGT 121 AAGACATTGA GTTTGATCCA ATGCATAAAA TGATGACTAA GAAAAATAAT ATATTTTTGA 181 TGAAATGTCT TTAAATTCAT CATATTGAAT TTGCTCCATT TCTTGAAAAG AATATGGTAG 241 CAACATGTGA TAACTCTGAA ATCCACCTGT TGACTTGCTC CATTCAATCA TATGAATGTG 301 GTAGCAGTGA ATGATTAGTT TGAAAGATGA CAAATAATTA ATGATATAGA ATAAGGGAGT 361 GGAGGGAAAG AATTATAATA GTCATCATTG TGGTAATGAT AAAAGGAAGA ACACTATGAG 421 TTCTTCAAAT AGTCCTTCAA AATGTGAAGG CAACTTTTAT TATCAAAATG GTATGAAAGG 481 TTATTAGACT TGTCAATGTT GTCAACCCCA TAATTTGACA AGTTTATAAA TCCTCTATCA 541 TGACACAAGA AGATAAAGTG ATGGTACACT TCATCTTTCA AAGTGATGTT GAGGTGTGTC 601 ATGGAAATAT GATGAATTTT AAAGCCATGA CAATGTGCTT ATAATGCAAA TTTATGAAGT 661 ACATATAAAT AATTAGTTCA TTCCTTGAAG AGAATGTGAC TTGTGATGAG TATCGTGAAT 721 GCTCGACCAT TCTATAAAAG AATGGGTCCA AATGTGATAA AATCATT Predicted gene structure (within gDNA segment 39906 to 42936): Exon 1 41317 41397 ( 81 n); cDNA 248 325 ( 78 n); score: 0.667 Intron 1 41398 41427 ( 30 n); Pd: 0.000 (s: 0.68), Pa: 0.599 (s: 0.69) ?? Exon 2 41428 41867 ( 440 n); cDNA 326 767 ( 442 n); score: 0.889 MATCH C08SLm0119I05.1+ SGN-E354965+ 0.854 521 0.679 C PGS_C08SLm0119I05.1+_SGN-E354965+ (41317 41397,41428 41867) Alignment (genomic DNA sequence = upper lines): TGAAAAGTCA TGAAATTCGT CCCATCGAAT TTGTTTCATT TCTTGAATAG AATGTGGTAG 41376 ||| || || ||||| || || | || | || | |||| | | | |||||||||| TGATAACTC- TGAAA-TCCA CCTGTTGACT -TGCTCCATT CAATCATATG AATGTGGTAG 304 TAACATATGA TAACTTTGAA ATCCACATGT TGACCTGCTC CAGTCTAACA G-ATGACAAA 41435 | |||| | | |||||| | |||||||| CAGTGAATGA TTAGTTTGAA A......... .......... .......... .GATGACAAA 334 TGATTAACGA TAT-GAAAAG AGGCGTGAAG GGATGAAATT ATAATAGTCA TCATTGTGGT 41494 | ||||| || ||| ||| | || ||| || ||| |||| |||||||||| |||||||||| TAATTAATGA TATAGAATAA GGGAGTGGAG GGAAAGAATT ATAATAGTCA TCATTGTGGT 394 AATTATAAAA GGAAGAACAT TATCGGTTCT CCAAATAGTC CATCAAAATG TGAAGGCAAT 41554 ||| |||||| ||||||||| ||| ||||| ||||||||| | |||||||| ||||||||| AATGATAAAA GGAAGAACAC TATGAGTTCT TCAAATAGTC CTTCAAAATG TGAAGGCAAC 454 TTTTGTTATC AAAATGGTAC GAAAGGTCAT TGGACTTGTG AATGTTGTCG CCTCAATAAT 41614 |||| ||||| ||||||||| ||||||| || | ||||||| ||||||||| | | ||||| TTTTATTATC AAAATGGTAT GAAAGGTTAT TAGACTTGTC AATGTTGTCA ACCCCATAAT 514 TTGACAAGTT TATAAATCCT CCATCAAAAG ACAAGAAGAT AAAGTGATGG TACACTTAAT 41674 |||||||||| |||||||||| | |||| | |||||||||| |||||||||| ||||||| || TTGACAAGTT TATAAATCCT CTATCATGAC ACAAGAAGAT AAAGTGATGG TACACTTCAT 574 CTTTCAAGGT GATGTTGAGG TGTTTCATGG AAATATGATG AATTTTAAAG CCATGACAAT 41734 ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CTTTCAAAGT GATGTTGAGG TGTGTCATGG AAATATGATG AATTTTAAAG CCATGACAAT 634 GTGCTTATAA TGCAAATTTA TGAATTACAT ATAAAGGATT AGTCCATTCC TTGAAGAGAA 41794 |||||||||| |||||||||| |||| ||||| ||||| ||| ||| |||||| |||||||||| GTGCTTATAA TGCAAATTTA TGAAGTACAT ATAAATAATT AGTTCATTCC TTGAAGAGAA 694 TGTGACTTGT GATGAGTATC GTAAAAACTC AACCATTCTA TATAAGAATG GGTCAAGATG 41854 |||||||||| |||||||||| || || ||| ||||||||| || ||||||| |||| | ||| TGTGACTTGT GATGAGTATC GTGAATGCTC GACCATTCTA TAAAAGAATG GGTCCAAATG 754 TGATAAAATC ATT 41867 |||||||||| ||| TGATAAAATC ATT 767 hqPGS_C08SLm0119I05.1+_SGN-E354965+ (41428 41867) ******************************************************************************** EST sequence 88 -strand 393 n (File: SGN-E204533-) 1 AATTTTTATT ATGAAAATGG TATGAAAAGT CATTAGACTT GTGAATGTTG TCAACCCAAT 61 AACTTGACAA GTTTATAAAT CCTCTATCAT GATATAAGAA GATAAAGTGA TGGTACACTT 121 TATCTTTCAA AGTGATGTTG AGGTGTGTCA TGGAAATATG ATGAATTTTA AAGTCATGAC 181 AATGTGCTTA TAATGCAAAT TTATAAAGTA CATATGAATA ATTAGTCCAA TCTTTGAAGA 241 GAATGTGACT TGTAATGAGT ATCGTGAATG CTCGACCATT CTATAAGAGA ATGGGTCCAG 301 ATGTGATAAA ATCATTATGG GTTGGATATA TGTCACAACT CACCTCTATA GAAGGTTTTG 361 AAAAAAAAAA AAAAAAAACT CGGACTAGTT CTC Predicted gene structure (within gDNA segment 40627 to 43093): Exon 1 41552 41918 ( 367 n); cDNA 1 367 ( 367 n); score: 0.896 PPA cDNA 368 379 MATCH C08SLm0119I05.1+ SGN-E204533- 0.896 367 0.934 C PGS_C08SLm0119I05.1+_SGN-E204533- (41552 41918) Alignment (genomic DNA sequence = upper lines): AATTTTTGTT ATCAAAATGG TACGAAAGGT CATTGGACTT GTGAATGTTG TCGCCTCAAT 41611 ||||||| || || ||||||| || |||| || |||| ||||| |||||||||| || | |||| AATTTTTATT ATGAAAATGG TATGAAAAGT CATTAGACTT GTGAATGTTG TCAACCCAAT 60 AATTTGACAA GTTTATAAAT CCTCCATCAA AAGACAAGAA GATAAAGTGA TGGTACACTT 41671 || ||||||| |||||||||| |||| |||| | | ||||| |||||||||| |||||||||| AACTTGACAA GTTTATAAAT CCTCTATCAT GATATAAGAA GATAAAGTGA TGGTACACTT 120 AATCTTTCAA GGTGATGTTG AGGTGTTTCA TGGAAATATG ATGAATTTTA AAGCCATGAC 41731 ||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||| |||||| TATCTTTCAA AGTGATGTTG AGGTGTGTCA TGGAAATATG ATGAATTTTA AAGTCATGAC 180 AATGTGCTTA TAATGCAAAT TTATGAATTA CATATAAAGG ATTAGTCCAT TCCTTGAAGA 41791 |||||||||| |||||||||| |||| || || ||||| || ||||||||| || ||||||| AATGTGCTTA TAATGCAAAT TTATAAAGTA CATATGAATA ATTAGTCCAA TCTTTGAAGA 240 GAATGTGACT TGTGATGAGT ATCGTAAAAA CTCAACCATT CTATATAAGA ATGGGTCAAG 41851 |||||||||| ||| |||||| ||||| || ||| |||||| ||||| ||| ||||||| || GAATGTGACT TGTAATGAGT ATCGTGAATG CTCGACCATT CTATAAGAGA ATGGGTCCAG 300 ATGTGATAAA ATCATTATGG GTTGGATATA TGCAACAACT CACCTCTATG GGAGGTTTGG 41911 |||||||||| |||||||||| |||||||||| || |||||| ||||||||| | |||||| | ATGTGATAAA ATCATTATGG GTTGGATATA TGTCACAACT CACCTCTATA GAAGGTTTTG 360 AAAAAAA 41918 ||||||| AAAAAAA 367 hqPGS_C08SLm0119I05.1+_SGN-E204533- (41552 41918) ******************************************************************************** EST sequence 102 +strand 664 n (File: SGN-E273497+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTTAT ATCATTGAGC GCTACCTCAT ATCAAAGATA 421 CCGTCGACGG TTATTTGATA TCGATTCCAA CAAGACATAA CTTATCGAGA TCTCTTCAAT 481 TTTTTTCATT ATTTCAGGTA CCTGAACCTT TTTCAAGATT TTATGAAGTG TTATGTCAAT 541 GTGCTCCTTT ATAGCACTTG CCTCATTATC ATGACCATAT TGATCATTTG CTCCTTCCTT 601 CTTTAAGGAA TTTTATATTT GGAATCAATT GGTCTATTAC GCTTTCGGCG TATCATAAAC 661 TCTG Predicted gene structure (within gDNA segment 46691 to 42446): Exon 1 43783 43209 ( 575 n); cDNA 73 664 ( 592 n); score: 0.828 MATCH C08SLm0119I05.1- SGN-E273497+ 0.828 575 0.866 C PGS_C08SLm0119I05.1-_SGN-E273497+ (43783 43209) Alignment (genomic DNA sequence = upper lines): TTTTCATATA TTGCCAAAGA AAAACAAATC TCATTGCATC TATCAGAGGA GAAAACATCT 43724 ||||||||| |||||| | |||||||| | |||||||||| | || |||| |||||||||| TTTTCATATG TTGCCAGATC AAAACAAACC TCATTGCATC CACCAAAGGA GAAAACATCT 132 CCAATAATGT CAGAATTTTT GCGACAAACC TTTATG-CCC AAGTCACAAA CCATACTTGA 43665 |||||||||| ||| |||||| |||| ||||| |||||| ||| ||| |||||| || || |||| CCAATAATGT CAGGATTTTT GCGATAAACC TTTATGCCCC AAGGCACAAA CCGTATTTGA 192 TATCTTATGA TTATATCATT GCATAATAA- --CTTTGTAC CCCTCTGACA TTATATCTTG 43608 ||||||| | ||||| || |||||||| ||||||| ||| |||||| ||||| |||| TATCTTACGG TTATACTATC ACATAATAAT TTATTTGTAC CCCACTGACA TTATACCTTG 252 ATTTATGGAC TATCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA TACTTGAATT 43548 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATGGAC TACCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA TACTTGAATT 312 ATGCATTTTA CTTGGCCAAC CGTTTATCTG TTCACACTAT ATGCTAGATT TGAATTCAAG 43488 ||||||||| |||||| ||| | |||||||| |||||||||| ||| ||||| |||||||||| GTGCATTTTA CTTGGCTAAC CATTTATCTG TTCACACTAT ATGACAGATT TGAATTCAAG 372 ATCCTCATTA CAGTTTATAT CATTGAGTGC TACTTTATAT CAAAGATA-C --CGACGATT 43431 |||||||| | || ||||||| ||||||| || ||| | |||| |||||||| | ||||| || ATCCTCATCA CAATTTATAT CATTGAGCGC TACCTCATAT CAAAGATACC GTCGACGGTT 432 ATTTGATATC GATTTCAATA TGACATAACT TATCGAGATC -C--C----- --TTCATT-T 43382 |||||||||| |||| ||| | ||||||||| |||||||||| | | |||||| | ATTTGATATC GATTCCAACA AGACATAACT TATCGAGATC TCTTCAATTT TTTTCATTAT 492 TTCAGGTACC TGAACCGTTT CCGAGGTTTT ATGAAGTGTT ATGTTAATGT GCTCTTTTAT 43322 |||||||||| |||||| ||| | || |||| |||||||||| |||| ||||| |||| ||||| TTCAGGTACC TGAACCTTTT TCAAGATTTT ATGAAGTGTT ATGTCAATGT GCTCCTTTAT 552 AGTTTTTGTC TCATTATCAT GACCATATTG ATCATTTGCT CCTCTCCTTC TTCAAGGAAT 43262 || ||| | |||||||||| |||||||||| |||||||||| ||| |||||| || ||||||| AGCACTTGCC TCATTATCAT GACCATATTG ATCATTTGCT CCT-TCCTTC TTTAAGGAAT 611 TTTATATTTG GAACCGATTT GTCTATTACG CTTTCGACGT ATCATAGACT CTG 43209 |||||||||| ||| | ||| |||||||||| |||||| ||| |||||| ||| ||| TTTATATTTG GAATCAATTG GTCTATTACG CTTTCGGCGT ATCATAAACT CTG 664 hqPGS_C08SLm0119I05.1-_SGN-E273497+ (43783 43209) ******************************************************************************** EST sequence 103 +strand 388 n (File: SGN-E273387+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTT Predicted gene structure (within gDNA segment 46691 to 42790): Exon 1 43783 43472 ( 312 n); cDNA 73 388 ( 316 n); score: 0.872 MATCH C08SLm0119I05.1- SGN-E273387+ 0.872 312 0.804 C PGS_C08SLm0119I05.1-_SGN-E273387+ (43783 43472) Alignment (genomic DNA sequence = upper lines): TTTTCATATA TTGCCAAAGA AAAACAAATC TCATTGCATC TATCAGAGGA GAAAACATCT 43724 ||||||||| |||||| | |||||||| | |||||||||| | || |||| |||||||||| TTTTCATATG TTGCCAGATC AAAACAAACC TCATTGCATC CACCAAAGGA GAAAACATCT 132 CCAATAATGT CAGAATTTTT GCGACAAACC TTTATG-CCC AAGTCACAAA CCATACTTGA 43665 |||||||||| ||| |||||| |||| ||||| |||||| ||| ||| |||||| || || |||| CCAATAATGT CAGGATTTTT GCGATAAACC TTTATGCCCC AAGGCACAAA CCGTATTTGA 192 TATCTTATGA TTATATCATT GCATAATAA- --CTTTGTAC CCCTCTGACA TTATATCTTG 43608 ||||||| | ||||| || |||||||| ||||||| ||| |||||| ||||| |||| TATCTTACGG TTATACTATC ACATAATAAT TTATTTGTAC CCCACTGACA TTATACCTTG 252 ATTTATGGAC TATCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA TACTTGAATT 43548 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATGGAC TACCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA TACTTGAATT 312 ATGCATTTTA CTTGGCCAAC CGTTTATCTG TTCACACTAT ATGCTAGATT TGAATTCAAG 43488 ||||||||| |||||| ||| | |||||||| |||||||||| ||| ||||| |||||||||| GTGCATTTTA CTTGGCTAAC CATTTATCTG TTCACACTAT ATGACAGATT TGAATTCAAG 372 ATCCTCATTA CAGTTT 43472 |||||||| | || ||| ATCCTCATCA CAATTT 388 hqPGS_C08SLm0119I05.1-_SGN-E273387+ (43783 43472) ******************************************************************************** EST sequence 25 -strand 677 n (File: SGN-E391540-) 1 GACAAGTGAT CTCATAATCA TTGGGGTACT CAATGAATGC GATATATCCA CATAAAATTG 61 CATCAAAATT TTTCAGTGTA TGTGCACTGT TAGACAAATA TTTTATTTGT CAAATTAACA 121 ATCTGTAGGT CAAGACAAAA TTTTGTCTTA CCAAGACCTT TTCATAAAAA TACAAGGACA 181 ATTAGGATCA TTCTTTTGTA CCCTTTTCTT CCTTGACTAT TTCAATCCAT ATAAGGATTC 241 TTGAAGCTTT ATTGAAAAAG TTTCTTTCAA ACTCTTGTAT GCTTCAGACA CCTCGATTGT 301 TTCAAGGATT TTCATATAAC CTTCATTGTC TAGCTAGACA TTACAATTAT TCATTACATG 361 CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 421 AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 481 CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 541 TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 601 ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 661 GAATTCAAGA TCCTCGT Predicted gene structure (within gDNA segment 46447 to 42268): Exon 1 44152 43482 ( 671 n); cDNA 3 675 ( 673 n); score: 0.889 MATCH C08SLm0119I05.1- SGN-E391540- 0.889 671 0.991 C PGS_C08SLm0119I05.1-_SGN-E391540- (44152 43482) Alignment (genomic DNA sequence = upper lines): CAAGCGATCT CACAATCATT GGGGTACTCA ATAAATGTGA TTTATCCATA TAAAATTGTA 44093 |||| ||||| || ||||||| |||||||||| || |||| || | |||||| | |||||||| | CAAGTGATCT CATAATCATT GGGGTACTCA ATGAATGCGA TATATCCACA TAAAATTGCA 62 TCAAAACTTT TTTGTGTATG TGCACTGATA GACAAATATT TCATTTGTCA AACTATCAAT 44033 |||||| ||| | ||||||| ||||||| || |||||||||| | |||||||| || || |||| TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT TTATTTGTCA AATTAACAAT 122 CTGTAGGTCA AGACAAAATT ATGTCTTACC AAAAATTTTT CATTAAAATA CAAAGACAAT 43973 |||||||||| |||||||||| ||||||||| || | |||| ||| |||||| ||| |||||| CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 182 TAGGGTCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 43913 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGATCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 242 GAAGCTTTAT TCAAAAAGTT TCTTTCAAAC TCTTATATGC TCCAGGCACC TCGATTACTT 43853 |||||||||| | |||||||| |||||||||| |||| ||||| | ||| |||| |||||| || GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 302 CAAGGATTTT TACATAACCT TCAGTTTTGT CTAGCTAGAC ATGATAATTA TTCATTATAT 43793 |||||||||| | ||||||| ||| |||| |||||||||| || | ||||| ||||||| || CAAGGATTTT CATATAACCT TCA---TTGT CTAGCTAGAC ATTACAATTA TTCATTACAT 359 GCATTCAAG- TTTTCATATA TTGCCAAAGA AAAACAAATC TCATTGCATC TATCAGAGGA 43734 ||||||||| ||||||||| |||||| | |||||||| | |||||||||| | || |||| GCATTCAAGC TTTTCATATG TTGCCAGATC AAAACAAACC TCATTGCATC CACCAAAGGA 419 GAAAACATCT CCAATAATGT CAGAATTTTT GCGACAAACC TTTATG-CCC AAGTCACAAA 43675 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||| ||| ||| |||||| GAAAACATCT CCAATAATGT CAGGATTTTT GCGATAAACC TTTATGCCCC AAGACACAAA 479 CCATACTTGA TATCTTATGA TTATATCATT GCATAATAA- --CTTTGTAC CCCTCTGACA 43618 || || |||| ||||||| | |||||| ||| ||||||||| ||||||| ||| |||||| CCGTATTTGA TATCTTACGG TTATATTATT GCATAATAAT TTATTTGTAC CCCACTGACA 539 TTATATCTTG ATTTATGGAC TATCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA 43558 ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TTATACCTTG ATTTATGGAC TACCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA 599 TACTTGAATT ATGCATTTTA CTTGGCCAAC CGTTTATCTG TTCACACTAT ATGCTAGATT 43498 |||||||||| ||||||||| ||||| |||| | || ||||| | |||||||| ||| ||||| TACTTGAATT GTGCATTTTA CTTGGTCAAC CATTAATCTG TCCACACTAT ATGACAGATT 659 TGAATTCAAG ATCCTC 43482 |||||||||| |||||| TGAATTCAAG ATCCTC 675 hqPGS_C08SLm0119I05.1-_SGN-E391540- (44152 43482) ******************************************************************************** EST sequence 22 -strand 554 n (File: SGN-E205808-) 1 CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 61 TAGGATCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 121 GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 181 CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT ACAATTATTC ATTACATGCA 241 TTCAAGCTTT TCATATGTTG CCAGATCAAA ACAAACCTCA TTGCATCCAC CAAAGGAGAA 301 AACATCTCCA ATAATGTCAG GATTTTTGCG ATAAACCTTT ATGCCCCAAG ACACAAACCG 361 TATTTGATAT CTTACGGTTA TATTATTGCA TAATAATTTA TTTGTACCCC ACTGACATTA 421 TACCTTGATT TATGGACTAC CAGTCCAAAA TGTCACTTTT CTAAGTGAAA CAAAATATAC 481 TTGAATTGTG CATTTTACTT GGTCAACCAT TAATCTGTCC ACACTATATG ACAGATTTGA 541 ATTCAAGATC CTCG Predicted gene structure (within gDNA segment 45227 to 42278): Exon 1 44032 43482 ( 551 n); cDNA 1 553 ( 553 n); score: 0.890 MATCH C08SLm0119I05.1- SGN-E205808- 0.890 551 0.995 C PGS_C08SLm0119I05.1-_SGN-E205808- (44032 43482) Alignment (genomic DNA sequence = upper lines): CTGTAGGTCA AGACAAAATT ATGTCTTACC AAAAATTTTT CATTAAAATA CAAAGACAAT 43973 |||||||||| |||||||||| ||||||||| || | |||| ||| |||||| ||| |||||| CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 60 TAGGGTCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 43913 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGATCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 120 GAAGCTTTAT TCAAAAAGTT TCTTTCAAAC TCTTATATGC TCCAGGCACC TCGATTACTT 43853 |||||||||| | |||||||| |||||||||| |||| ||||| | ||| |||| |||||| || GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 180 CAAGGATTTT TACATAACCT TCAGTTTTGT CTAGCTAGAC ATGATAATTA TTCATTATAT 43793 |||||||||| | ||||||| ||| |||| |||||||||| || | ||||| ||||||| || CAAGGATTTT CATATAACCT TCA---TTGT CTAGCTAGAC ATTACAATTA TTCATTACAT 237 GCATTCAAG- TTTTCATATA TTGCCAAAGA AAAACAAATC TCATTGCATC TATCAGAGGA 43734 ||||||||| ||||||||| |||||| | |||||||| | |||||||||| | || |||| GCATTCAAGC TTTTCATATG TTGCCAGATC AAAACAAACC TCATTGCATC CACCAAAGGA 297 GAAAACATCT CCAATAATGT CAGAATTTTT GCGACAAACC TTTATG-CCC AAGTCACAAA 43675 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||| ||| ||| |||||| GAAAACATCT CCAATAATGT CAGGATTTTT GCGATAAACC TTTATGCCCC AAGACACAAA 357 CCATACTTGA TATCTTATGA TTATATCATT GCATAATAAC TT---TGTAC CCCTCTGACA 43618 || || |||| ||||||| | |||||| ||| ||||||||| || ||||| ||| |||||| CCGTATTTGA TATCTTACGG TTATATTATT GCATAATAAT TTATTTGTAC CCCACTGACA 417 TTATATCTTG ATTTATGGAC TATCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA 43558 ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TTATACCTTG ATTTATGGAC TACCAGTCCA AAATGTCACT TTTCTAAGTG AAACAAAATA 477 TACTTGAATT ATGCATTTTA CTTGGCCAAC CGTTTATCTG TTCACACTAT ATGCTAGATT 43498 |||||||||| ||||||||| ||||| |||| | || ||||| | |||||||| ||| ||||| TACTTGAATT GTGCATTTTA CTTGGTCAAC CATTAATCTG TCCACACTAT ATGACAGATT 537 TGAATTCAAG ATCCTC 43482 |||||||||| |||||| TGAATTCAAG ATCCTC 553 hqPGS_C08SLm0119I05.1-_SGN-E205808- (44032 43482) ******************************************************************************** EST sequence 17 -strand 454 n (File: SGN-E202657-) 1 ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 61 ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 121 CATTACAATT ATTCATTACA TGCATTCAAG CTTTTCATAT GTTGCCAGAT CAAATCAAAC 181 CTCATTGCAT CCACCAAAGG AGAAAACATC TCCAATAATG TCAGGATTTT TGCGATAAAC 241 CTTTATGCCC CAAGAAGCAA CCCGTATTTG ATATCTTACG GTTATATTAT TGCATAATAA 301 TTTATTTGTA CCCCACTGAC ATTATACCTT GATTTATGGA CTACCAGTCC AAAATGTCAC 361 TTTTTTAAGT GAAACAAAAT ATACTTGAAT TGTGCATTTT ACTTGGTCAA CCATTAATCT 421 GTCCACACTA TATGACAGAT TTGAATTCAA GATC Predicted gene structure (within gDNA segment 44546 to 42318): Exon 1 43936 43485 ( 452 n); cDNA 1 454 ( 454 n); score: 0.871 MATCH C08SLm0119I05.1- SGN-E202657- 0.871 452 0.996 C PGS_C08SLm0119I05.1-_SGN-E202657- (43936 43485) Alignment (genomic DNA sequence = upper lines): ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTCAAAA AGTTTCTTTC AAACTCTTAT 43877 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| | ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 60 ATGCTCCAGG CACCTCGATT ACTTCAAGGA TTTTTACATA ACCTTCAGTT TTGTCTAGCT 43817 ||||| ||| |||||||||| |||||||| |||| | ||| ||||||| |||||||||| ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCA--- TTGTCTAGCT 117 AGACATGATA ATTATTCATT ATATGCATTC AAG-TTTTCA TATATTGCCA AAGAAAAACA 43758 |||||| | | |||||||||| | |||||||| ||| |||||| ||| |||||| | ||| || AGACATTACA ATTATTCATT ACATGCATTC AAGCTTTTCA TATGTTGCCA GATCAAATCA 177 AATCTCATTG CATCTATCAG AGGAGAAAAC ATCTCCAATA ATGTCAGAAT TTTTGCGACA 43698 || ||||||| |||| | || |||||||||| |||||||||| ||||||| || |||||||| | AACCTCATTG CATCCACCAA AGGAGAAAAC ATCTCCAATA ATGTCAGGAT TTTTGCGATA 237 AACCTTTATG -CCCAAGTCA CAAACCATAC TTGATATCTT ATGATTATAT CATTGCATAA 43639 |||||||||| |||||| ||| || || |||||||||| | | |||||| ||||||||| AACCTTTATG CCCCAAGAAG CAACCCGTAT TTGATATCTT ACGGTTATAT TATTGCATAA 297 TAA---CTTT GTACCCCTCT GACATTATAT CTTGATTTAT GGACTATCAG TCCAAAATGT 43582 ||| ||| ||||||| || ||||||||| |||||||||| |||||| ||| |||||||||| TAATTTATTT GTACCCCACT GACATTATAC CTTGATTTAT GGACTACCAG TCCAAAATGT 357 CACTTTTCTA AGTGAAACAA AATATACTTG AATTATGCAT TTTACTTGGC CAACCGTTTA 43522 ||||||| || |||||||||| |||||||||| |||| ||||| ||||||||| ||||| || | CACTTTTTTA AGTGAAACAA AATATACTTG AATTGTGCAT TTTACTTGGT CAACCATTAA 417 TCTGTTCACA CTATATGCTA GATTTGAATT CAAGATC 43485 ||||| |||| ||||||| | |||||||||| ||||||| TCTGTCCACA CTATATGACA GATTTGAATT CAAGATC 454 hqPGS_C08SLm0119I05.1-_SGN-E202657- (43936 43485) ******************************************************************************** EST sequence 27 -strand 582 n (File: SGN-E267707-) 1 TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 61 TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 121 AAAATACAAG GACAATTAGG ATCATTCTTT TGTACCCTTT TCTTCCTTGA CTATTTCAAT 181 CCATATAAGG ATTCTTGAAG CTTTATTGAA AAAGTTTCTT TCAAACTCTT GTATGCTTCA 241 GACACCTCGA TTGTTTCAAG GATTTTCATA TAACCTTCAT TGTCTAGCTA GACATTACAA 301 TTATTCATTA CATGCATTCA AGCTTTTCAT ATGTTGCCAG ATCAAAACAA ACCTCATTGC 361 ATCCACCAAA GGAGAAAACA TCTCCAATAA TGTCAGGATT TTTGCGATAA ACCTTTATGC 421 CCCAAGACAC AAACCGTATT TGATATCTTA CGGTTATATT ATTGCATAAT AATTTATTTG 481 TACCCCACTG ACATTATACC TTGATTTATG GACTACCAGT CCAAAATGTC ACTTTTCTAA 541 GTGAAACAAA ATATACTTGA ATTGTGCATT TTACTTGGTC AA Predicted gene structure (within gDNA segment 45987 to 42758): Exon 1 44108 43529 ( 580 n); cDNA 1 582 ( 582 n); score: 0.889 MATCH C08SLm0119I05.1- SGN-E267707- 0.889 580 0.997 C PGS_C08SLm0119I05.1-_SGN-E267707- (44108 43529) Alignment (genomic DNA sequence = upper lines): TCCATATAAA ATTGTATCAA AACTTTTTTG TGTATGTGCA CTGATAGACA AATATTTCAT 44049 |||| ||||| |||| ||||| || |||| | |||||||||| ||| |||||| ||||||| || TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 60 TTGTCAAACT ATCAATCTGT AGGTCAAGAC AAAATTATGT CTTACCAAAA ATTTTTCATT 43989 |||||||| | | |||||||| |||||||||| |||||| ||| |||||||| | ||||||| TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 120 AAAATACAAA GACAATTAGG GTCATTCTTT TGTACCCTTT TCTTCCTTGA CTATTTCAAT 43929 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAAATACAAG GACAATTAGG ATCATTCTTT TGTACCCTTT TCTTCCTTGA CTATTTCAAT 180 CCATATAAGG ATTCTTGAAG CTTTATTCAA AAAGTTTCTT TCAAACTCTT ATATGCTCCA 43869 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||| || CCATATAAGG ATTCTTGAAG CTTTATTGAA AAAGTTTCTT TCAAACTCTT GTATGCTTCA 240 GGCACCTCGA TTACTTCAAG GATTTTTACA TAACCTTCAG TTTTGTCTAG CTAGACATGA 43809 | |||||||| || |||||| |||||| | | ||||||||| |||||||| |||||||| | GACACCTCGA TTGTTTCAAG GATTTTCATA TAACCTTCA- --TTGTCTAG CTAGACATTA 297 TAATTATTCA TTATATGCAT TCAAG-TTTT CATATATTGC CAAAGAAAAA CAAATCTCAT 43750 ||||||||| ||| |||||| ||||| |||| ||||| |||| || | |||| |||| ||||| CAATTATTCA TTACATGCAT TCAAGCTTTT CATATGTTGC CAGATCAAAA CAAACCTCAT 357 TGCATCTATC AGAGGAGAAA ACATCTCCAA TAATGTCAGA ATTTTTGCGA CAAACCTTTA 43690 |||||| | | | |||||||| |||||||||| ||||||||| |||||||||| ||||||||| TGCATCCACC AAAGGAGAAA ACATCTCCAA TAATGTCAGG ATTTTTGCGA TAAACCTTTA 417 TG-CCCAAGT CACAAACCAT ACTTGATATC TTATGATTAT ATCATTGCAT AATAA---CT 43634 || |||||| |||||||| | | |||||||| ||| | |||| || ||||||| ||||| | TGCCCCAAGA CACAAACCGT ATTTGATATC TTACGGTTAT ATTATTGCAT AATAATTTAT 477 TTGTACCCCT CTGACATTAT ATCTTGATTT ATGGACTATC AGTCCAAAAT GTCACTTTTC 43574 ||||||||| |||||||||| | |||||||| |||||||| | |||||||||| |||||||||| TTGTACCCCA CTGACATTAT ACCTTGATTT ATGGACTACC AGTCCAAAAT GTCACTTTTC 537 TAAGTGAAAC AAAATATACT TGAATTATGC ATTTTACTTG GCCAA 43529 |||||||||| |||||||||| |||||| ||| |||||||||| | ||| TAAGTGAAAC AAAATATACT TGAATTGTGC ATTTTACTTG GTCAA 582 hqPGS_C08SLm0119I05.1-_SGN-E267707- (44108 43529) ******************************************************************************** EST sequence 47 -strand 409 n (File: SGN-E289962-) 1 AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 61 CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 121 AACTGAATCA TCATTTATGT CAAGTAATCT CATAATCATT GGGGTACTCA ATGAATGCGA 181 TTTATTCATA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 241 TCATTTGTCA AATTATCAAT CTGTAGGTCA AGGCAAAATT TTGTCTTACC AAGACCTTTT 301 CATAAAAATA CAAGGACAAT TAGGGTCATT CTTTTGTACC ATTTTTCTTC CTTGACTATT 361 TCAATCCATA TAAGAATTCT TGAAGCTTTA TTGGATAAGT TTCTTTCAA Predicted gene structure (within gDNA segment 46954 to 43132): Exon 1 44294 43885 ( 410 n); cDNA 1 409 ( 409 n); score: 0.882 MATCH C08SLm0119I05.1- SGN-E289962- 0.882 410 1.002 C PGS_C08SLm0119I05.1-_SGN-E289962- (44294 43885) Alignment (genomic DNA sequence = upper lines): AGTAAATTTA CTGCAAAACA GATATTTGGT CGAGTATTGT TAGCAAGATG CATTAGTACC 44235 |||||||||| |||||||||| |||| ||| | |||||| ||| |||||| || |||| || AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 60 CTAATTGCAC TAAGATATGG AGTTTCATCA CTAAAAAGCT CTTAATCCTT CTCTTGAGAT 44175 || ||||||| |||||| | |||||||||| | || || || | | |||||| || ||||||| CTGATTGCAC CAAGATA--G AGTTTCATCA CCAAGAAACT CATCATCCTT CTTTTGAGAT 118 CAAAATGAAT CATTATTTAT TTCAAGCGAT CTCACAATCA TTGGGGTACT CAATAAATGT 44115 |||| ||||| ||| |||||| ||||| || |||| ||||| |||||||||| |||| |||| CAAACTGAAT CATCATTTAT GTCAAGTAAT CTCATAATCA TTGGGGTACT CAATGAATGC 178 GATTTATCCA TATAAAATTG TATCAAAACT TTTTTGTGTA TGTGCACTGA TAGACAAATA 44055 ||||||| || |||||||||| ||||||| | ||| ||||| ||||||||| |||||||||| GATTTATTCA TATAAAATTG CATCAAAATT TTTCAGTGTA TGTGCACTGT TAGACAAATA 238 TTTCATTTGT CAAACTATCA ATCTGTAGGT CAAGACAAAA TTATGTCTTA CCAAAAATTT 43995 |||||||||| |||| ||||| |||||||||| |||| ||||| || ||||||| |||| | || TTTCATTTGT CAAATTATCA ATCTGTAGGT CAAGGCAAAA TTTTGTCTTA CCAAGACCTT 298 TTCATTAAAA TACAAAGACA ATTAGGGTCA TTCTTTTGTA CC-CTTTTCT TCCTTGACTA 43936 ||||| |||| ||||| |||| |||||||||| |||||||||| || |||||| |||||||||| TTCATAAAAA TACAAGGACA ATTAGGGTCA TTCTTTTGTA CCATTTTTCT TCCTTGACTA 358 TTTCAATCCA TATAAGGATT CTTGAAGCTT TATTCAAAAA GTTTCTTTCA A 43885 |||||||||| |||||| ||| |||||||||| |||| | || |||||||||| | TTTCAATCCA TATAAGAATT CTTGAAGCTT TATTGGATAA GTTTCTTTCA A 409 hqPGS_C08SLm0119I05.1-_SGN-E289962- (44294 43885) ******************************************************************************** EST sequence 8 -strand 815 n (File: SGN-E538498-) 1 GATAATGAAA GAGCTGAAAG CTAGAGAAAT CAATAATGAT CATACCTTGG CTTACCAGAG 61 CCGAGTTGGT CCTGTCCAAT GGTTGAAGCC ATACACTGAT GAAGTTCTTG TTGAGCTTGG 121 ACAGAAAGGT GTAAAGTCTC TGTTGGCTGT TCCAGTAAGC TTTGTGAGTG AGCATATAGA 181 GACTCTTGAA GAGATTGATA TGGAATACAA GGAGTTAGCT CTTGAATCGG GAATTGAAAA 241 TTGGGGTCGT GTTCCTGCTC TGAATTGCAC CTCCTCTTTT ATAACTGATC TGGCAGATGC 301 TGTTATTGAA GCATTGCCCT CGACAATGGC AATGTCAACG TCCACTGGCA CAGAGGAAGA 361 AGTTGACAAT AATCCGATGC AATATTTTAT GAAAATGCTT TTCGGATCAG TATTAGCATT 421 TGTTTTTCTG TTTTTGCCAA AGATGGTATC GGCTTTTAAT AAGAACATAC TTTAGGGAGG 481 ACAGAGAGAG ATCCTTTACA GAAATAGTAC AGAGATCAAA AAGCAATATT ATGGTGCTGC 541 CTGGAGGTTT TTTGATTTTA TAAACAATTT ACAAGAGTTG TTTTTCCTAC TAAAGATGCT 601 TTTATTAGAG AGACTGGATT CGACATTATT GAAGGTGCTA GTATTCTGTT TCTGGGGCAG 661 CACTTGTGCA TAGAAAGATA GCAAATCAGA GATGAAACAA TCTTTGTGGC TTCAGTTTTA 721 GAGATTAAAA ATATCTTCTA TTTTTTTTGT ATATCTACGA ATTATCTTCT ATTATACAAT 781 AAATTTATCA TTTGTGAAAA AAAAAAAAAA AGAAA Predicted gene structure (within gDNA segment 51957 to 48226): Exon 1 51347 51290 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 51289 50624 ( 666 n); Pd: 0.949 (s: 1.00), Pa: 0.730 (s: 1.00) Exon 2 50623 50523 ( 101 n); cDNA 59 159 ( 101 n); score: 1.000 Intron 2 50522 49662 ( 861 n); Pd: 0.972 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 49661 49004 ( 658 n); cDNA 160 815 ( 656 n); score: 0.985 MATCH C08SLm0119I05.1- SGN-E538498- 0.988 817 1.002 C PGS_C08SLm0119I05.1-_SGN-E538498- (51347 51290,50623 50523,49661 49004) Alignment (genomic DNA sequence = upper lines): GATAATGAAA GAGCTGAAAG CTAGAGAAAT CAATAATGAT CATACCTTGG CTTACCAGGT 51288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GATAATGAAA GAGCTGAAAG CTAGAGAAAT CAATAATGAT CATACCTTGG CTTACCAG.. 58 TTCTCCTAAA GCTCAAGTCC TCCAGATCAC TTTTTGTGTT ACCTGTATTC TCCAAATTCT 51228 .......... .......... .......... .......... .......... .......... 58 GCAATACCAT ATACATTCAG CTCTTCCTAA TGGTGCCCTC TAAGTGATTT ATTAGATATT 51168 .......... .......... .......... .......... .......... .......... 58 GGAAATAAAT GTATTTTTCC ACGCTGCAAT GACTCAAAGT TCAGTTTAGC CAAATTCTCT 51108 .......... .......... .......... .......... .......... .......... 58 GTGCTTTTAC GGATCATTCC ATATTTTTCT CCTTTTTTTT TCCTTCCTCC TATTTTTAAA 51048 .......... .......... .......... .......... .......... .......... 58 ACAGCCTTTT CTTGTGAGGA AGTTTGTAGG GGTTTGAGAC AGAATTTGAC TACCCTTTTC 50988 .......... .......... .......... .......... .......... .......... 58 CCCAATTTAC TTCTATTTTG TTGTTTCACA AAATATTACG TTTCCCCCAG AAATGCCAAA 50928 .......... .......... .......... .......... .......... .......... 58 GGTTCATCCC TCGATATTTC AGATTGATGT TAATTTTACC TGTATTATTT CAAATTTTAT 50868 .......... .......... .......... .......... .......... .......... 58 GTGACTTCTT CTCTACCAAC TTCAGACTTT TTTACATTTC AGATATTCCT AACTCTTATC 50808 .......... .......... .......... .......... .......... .......... 58 CAAACTCGGT GTTAATAATC CTTCATCACA TTTTACCCCT ATAATATGTA AAATGAAGAA 50748 .......... .......... .......... .......... .......... .......... 58 AAGCAATTTC ATTGATGTGG GGAAGTTCCT GTATACAAGG AATATACCAA AAACTAAATA 50688 .......... .......... .......... .......... .......... .......... 58 TATTGGGATG AAGGTACTTT CCCCTCGTGG TGAATTAATT CAGTATTATC CTTTTGCATT 50628 .......... .......... .......... .......... .......... .......... 58 CCAGAGCCGA GTTGGTCCTG TCCAATGGTT GAAGCCATAC ACTGATGAAG TTCTTGTTGA 50568 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....AGCCGA GTTGGTCCTG TCCAATGGTT GAAGCCATAC ACTGATGAAG TTCTTGTTGA 114 GCTTGGACAG AAAGGTGTAA AGTCTCTGTT GGCTGTTCCA GTAAGGTATG CATTCTAGCG 50508 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCTTGGACAG AAAGGTGTAA AGTCTCTGTT GGCTGTTCCA GTAAG..... .......... 159 GCTGAAACTT ATCTTCTCAA TAAGTTATGG TGTCATGGGA TCAAAACTCA GGTACTATCA 50448 .......... .......... .......... .......... .......... .......... 159 ATTTATTGGG TGATTTTTTA TTAGATTAAC AACCTGGGTT AGACTTTCTA TGGGCTGTTT 50388 .......... .......... .......... .......... .......... .......... 159 GCTAGTTTAA CATGATCACA TTTTGTTGAA AACTATTTCA AGTCTACTAT GGTTTTTCTA 50328 .......... .......... .......... .......... .......... .......... 159 GCCAGACCTG ATTTGCTGGA GATGGTAACA AGAAGACCAC ATGACTCATG GGTCCTATTG 50268 .......... .......... .......... .......... .......... .......... 159 CTACAAATTG GCAACTTGAA TTTATAGAAA GGATCGTCAT GTATGGATGC TAATCTCTTG 50208 .......... .......... .......... .......... .......... .......... 159 TGCATGAGAG GTTGGAGATT TAATAATGTG ACTATAACCG CGAGAACCTC TTTGACTAGT 50148 .......... .......... .......... .......... .......... .......... 159 CAGAAGAAAA AAAAGGGGGT GAGATGTTTA TCTTACTTGT AGTGTCTTGT AATTGTTGAG 50088 .......... .......... .......... .......... .......... .......... 159 TTAGATGCAT TATCGTAATG GTTCTCCTGC ATATTCATAA AACTGATGTG GGAATTTGAA 50028 .......... .......... .......... .......... .......... .......... 159 GCGACAATAG CTAACTGTCT CTGAGATACA TTTTAGTTTT GGGATTTTGG AAGGGACAAT 49968 .......... .......... .......... .......... .......... .......... 159 GCTTTTGTTG ACTTGGTAGG AAGTGATTCT CTTTTGGTTG TGTGTGTTGT GAATGTCTGA 49908 .......... .......... .......... .......... .......... .......... 159 TGCTCTTTTG GTTGTGTGTG TTGTGAATGT CTGTGCAATT GGGCATCATG AAGTACAAAT 49848 .......... .......... .......... .......... .......... .......... 159 TGGAATTGTT TCACTGTGTA TGAGAGTTTA AATTATCATA ACCACTTCAA GAGTGTTTGG 49788 .......... .......... .......... .......... .......... .......... 159 CCTTTGTTGT CAATTAAGAT ACTCTTCTCA TATGAATGTT TACTTTTTTC TTGTCTGCCA 49728 .......... .......... .......... .......... .......... .......... 159 GATAACACAA TCTCTTGCTT TATTCTTGAT ATGTCACCTA ATGTAATCAT GCTATTGGAA 49668 .......... .......... .......... .......... .......... .......... 159 TTTCAGCTTT GTGAGTGAGC ATATAGAGAC TCTTGAAGAG ATTGATATGG AATACAAGGA 49608 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......CTTT GTGAGTGAGC ATATAGAGAC TCTTGAAGAG ATTGATATGG AATACAAGGA 213 GTTAGCTCTT GAATCGGGAA TTGAAAATTG GGGTCGTGTT CCTGCTCTGA ATTGCACCTC 49548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGCTCTT GAATCGGGAA TTGAAAATTG GGGTCGTGTT CCTGCTCTGA ATTGCACCTC 273 CTCTTTTATA ACTGATCTGG CAGATGCTGT TATTGAAGCA TTGCCCTCGA CAATGGCAAT 49488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTTATA ACTGATCTGG CAGATGCTGT TATTGAAGCA TTGCCCTCGA CAATGGCAAT 333 GTCAACGTCC ACTGGCACAG AGGAAGAAGT TGACAATAAT CCGATGCAAT ATTTTATGAA 49428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACGTCC ACTGGCACAG AGGAAGAAGT TGACAATAAT CCGATGCAAT ATTTTATGAA 393 AATGCTTTTC GGATCAGTAT TAGCATTTGT TTTTCTGTTT TTGCCAAAGA TGGTATCGGC 49368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTTTTC GGATCAGTAT TAGCATTTGT TTTTCTGTTT TTGCCAAAGA TGGTATCGGC 453 TTTTAATAAG AACATACTTT AGGGAGGACA GAGAGAGATC CTTTACAGAA ATAGTACAGA 49308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAATAAG AACATACTTT AGGGAGGACA GAGAGAGATC CTTTACAGAA ATAGTACAGA 513 GATCAAAAAG CAATATTATG GTGCTGCCTG GAGGTTTTTT GATTTTATAA ACAATTTACA 49248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAAAAG CAATATTATG GTGCTGCCTG GAGGTTTTTT GATTTTATAA ACAATTTACA 573 AGAGTTGTTT TTCCTACTAA AGATGCTTTT ATTAGAGAGA CTGGATTCGA CATTATTGAA 49188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTGTTT TTCCTACTAA AGATGCTTTT ATTAGAGAGA CTGGATTCGA CATTATTGAA 633 GGTGCTAGTA TTCTGTTTCT GGGGCAGCAC TTGTGCATAG AAAGATAGCA AATCAGAGAT 49128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCTAGTA TTCTGTTTCT GGGGCAGCAC TTGTGCATAG AAAGATAGCA AATCAGAGAT 693 GAAACAATCT TTGTGGCTTC AGTTTTAGAG ATTAAAAATA TCTTCTATTT TTTTTGTATA 49068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACAATCT TTGTGGCTTC AGTTTTAGAG ATTAAAAATA TCTTCTATTT TTTTTGTATA 753 TCTACGAATT ATCTTCTATT ATACAATAAA TTTATCATTT GTAGAAACAG TATGTACAAA 49008 |||||||||| |||||||||| |||||||||| |||||||||| || |||| | | | ||| TCTACGAATT ATCTTCTATT ATACAATAAA TTTATCATTT GT-GAAA-AA AAAAAAAAAA 811 TTAA 49004 || GAAA 815 hqPGS_C08SLm0119I05.1-_SGN-E538498- (51347 51290,50623 50523,49661 49004) ******************************************************************************** EST sequence 79 +strand 666 n (File: SGN-E214448+) 1 TGAAGCCATA CACTGATGAA GTTCTTGTTG AGCTTGGACA GAAAGGTGTA AAGTCTCTGT 61 TGGCTGTTCC AGTAAGCTTT GTGAGTGAGC ATATAGAGAC TCTTGAAGAG ATTGATATGG 121 AATACAAGGA GTTAGCTCTT GAATCGGGAA TTGAAAATTG GGGTCGTGTT CCTGCTCTGA 181 ATTGCACCTC CTCTTTTATA ACTGATCTGG CAGATGCTGT TATTGAAGCA TTGCCCTCGA 241 CAATGGCAAT GTCAACGTCC ACTGGCACAG AGGAAGAAGT TGACAATAAT CCGATGCAAT 301 ATTTTATGAA AATGCTTTTC GGATCAGTAT TAGCATTTGT TTTTCTGTTT TTGCCAAAGA 361 TGGTATCGGC TTTTAATAAG AACATACTTT AGGGAGGACA GAGAGAGATC CTTTACAGAA 421 ATAGTACAGA GATCAAAAAG CAATATTATG GTGCTGCCTG GAGGTTTTTT GATTTTATAA 481 ACAATTTACA AGAGTTGTTT TTCCTACTAA AGATGCTTTT ATTAGAGAGA CTGGATTCGA 541 CATTATTGAA AGTGCTAGTA TTCTGGTTCT GGGGCAGCAC TTGTGCCTAG AAAGATAGCC 601 AATCCGAGAT GAAACCATCC TTGTGGCTTC AGGTTTAGAG AATAAAAAAA TCCTCCAATT 661 TTTTTG Predicted gene structure (within gDNA segment 51198 to 47742): Exon 1 50598 50523 ( 76 n); cDNA 1 76 ( 76 n); score: 1.000 Intron 1 50522 49662 ( 861 n); Pd: 0.972 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49661 49072 ( 590 n); cDNA 77 666 ( 590 n); score: 0.978 MATCH C08SLm0119I05.1- SGN-E214448+ 0.980 666 1.000 C PGS_C08SLm0119I05.1-_SGN-E214448+ (50598 50523,49661 49072) Alignment (genomic DNA sequence = upper lines): TGAAGCCATA CACTGATGAA GTTCTTGTTG AGCTTGGACA GAAAGGTGTA AAGTCTCTGT 50539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCCATA CACTGATGAA GTTCTTGTTG AGCTTGGACA GAAAGGTGTA AAGTCTCTGT 60 TGGCTGTTCC AGTAAGGTAT GCATTCTAGC GGCTGAAACT TATCTTCTCA ATAAGTTATG 50479 |||||||||| |||||| TGGCTGTTCC AGTAAG.... .......... .......... .......... .......... 76 GTGTCATGGG ATCAAAACTC AGGTACTATC AATTTATTGG GTGATTTTTT ATTAGATTAA 50419 .......... .......... .......... .......... .......... .......... 76 CAACCTGGGT TAGACTTTCT ATGGGCTGTT TGCTAGTTTA ACATGATCAC ATTTTGTTGA 50359 .......... .......... .......... .......... .......... .......... 76 AAACTATTTC AAGTCTACTA TGGTTTTTCT AGCCAGACCT GATTTGCTGG AGATGGTAAC 50299 .......... .......... .......... .......... .......... .......... 76 AAGAAGACCA CATGACTCAT GGGTCCTATT GCTACAAATT GGCAACTTGA ATTTATAGAA 50239 .......... .......... .......... .......... .......... .......... 76 AGGATCGTCA TGTATGGATG CTAATCTCTT GTGCATGAGA GGTTGGAGAT TTAATAATGT 50179 .......... .......... .......... .......... .......... .......... 76 GACTATAACC GCGAGAACCT CTTTGACTAG TCAGAAGAAA AAAAAGGGGG TGAGATGTTT 50119 .......... .......... .......... .......... .......... .......... 76 ATCTTACTTG TAGTGTCTTG TAATTGTTGA GTTAGATGCA TTATCGTAAT GGTTCTCCTG 50059 .......... .......... .......... .......... .......... .......... 76 CATATTCATA AAACTGATGT GGGAATTTGA AGCGACAATA GCTAACTGTC TCTGAGATAC 49999 .......... .......... .......... .......... .......... .......... 76 ATTTTAGTTT TGGGATTTTG GAAGGGACAA TGCTTTTGTT GACTTGGTAG GAAGTGATTC 49939 .......... .......... .......... .......... .......... .......... 76 TCTTTTGGTT GTGTGTGTTG TGAATGTCTG ATGCTCTTTT GGTTGTGTGT GTTGTGAATG 49879 .......... .......... .......... .......... .......... .......... 76 TCTGTGCAAT TGGGCATCAT GAAGTACAAA TTGGAATTGT TTCACTGTGT ATGAGAGTTT 49819 .......... .......... .......... .......... .......... .......... 76 AAATTATCAT AACCACTTCA AGAGTGTTTG GCCTTTGTTG TCAATTAAGA TACTCTTCTC 49759 .......... .......... .......... .......... .......... .......... 76 ATATGAATGT TTACTTTTTT CTTGTCTGCC AGATAACACA ATCTCTTGCT TTATTCTTGA 49699 .......... .......... .......... .......... .......... .......... 76 TATGTCACCT AATGTAATCA TGCTATTGGA ATTTCAGCTT TGTGAGTGAG CATATAGAGA 49639 ||| |||||||||| |||||||||| .......... .......... .......... .......CTT TGTGAGTGAG CATATAGAGA 99 CTCTTGAAGA GATTGATATG GAATACAAGG AGTTAGCTCT TGAATCGGGA ATTGAAAATT 49579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTGAAGA GATTGATATG GAATACAAGG AGTTAGCTCT TGAATCGGGA ATTGAAAATT 159 GGGGTCGTGT TCCTGCTCTG AATTGCACCT CCTCTTTTAT AACTGATCTG GCAGATGCTG 49519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTCGTGT TCCTGCTCTG AATTGCACCT CCTCTTTTAT AACTGATCTG GCAGATGCTG 219 TTATTGAAGC ATTGCCCTCG ACAATGGCAA TGTCAACGTC CACTGGCACA GAGGAAGAAG 49459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAGC ATTGCCCTCG ACAATGGCAA TGTCAACGTC CACTGGCACA GAGGAAGAAG 279 TTGACAATAA TCCGATGCAA TATTTTATGA AAATGCTTTT CGGATCAGTA TTAGCATTTG 49399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAATAA TCCGATGCAA TATTTTATGA AAATGCTTTT CGGATCAGTA TTAGCATTTG 339 TTTTTCTGTT TTTGCCAAAG ATGGTATCGG CTTTTAATAA GAACATACTT TAGGGAGGAC 49339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCTGTT TTTGCCAAAG ATGGTATCGG CTTTTAATAA GAACATACTT TAGGGAGGAC 399 AGAGAGAGAT CCTTTACAGA AATAGTACAG AGATCAAAAA GCAATATTAT GGTGCTGCCT 49279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGAGAT CCTTTACAGA AATAGTACAG AGATCAAAAA GCAATATTAT GGTGCTGCCT 459 GGAGGTTTTT TGATTTTATA AACAATTTAC AAGAGTTGTT TTTCCTACTA AAGATGCTTT 49219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTTTTT TGATTTTATA AACAATTTAC AAGAGTTGTT TTTCCTACTA AAGATGCTTT 519 TATTAGAGAG ACTGGATTCG ACATTATTGA AGGTGCTAGT ATTCTGTTTC TGGGGCAGCA 49159 |||||||||| |||||||||| |||||||||| | |||||||| |||||| ||| |||||||||| TATTAGAGAG ACTGGATTCG ACATTATTGA AAGTGCTAGT ATTCTGGTTC TGGGGCAGCA 579 CTTGTGCATA GAAAGATAGC AAATCAGAGA TGAAACAATC TTTGTGGCTT CAGTTTTAGA 49099 ||||||| || |||||||||| |||| |||| |||||| ||| ||||||||| ||| |||||| CTTGTGCCTA GAAAGATAGC CAATCCGAGA TGAAACCATC CTTGTGGCTT CAGGTTTAGA 639 GATTAAAAAT ATCTTCTATT TTTTTTG 49072 || |||||| ||| || | | ||||||| GAATAAAAAA ATCCTCCAAT TTTTTTG 666 hqPGS_C08SLm0119I05.1-_SGN-E214448+ (50598 50523,49661 49072) ******************************************************************************** EST sequence 71 +strand 772 n (File: SGN-E551787+) 1 CAAGGTTACA TCAAGTCCAT GGCAAACTTG ATTGAGCAGG AGTTACATAA TTTCACTAAG 61 CCTGAGGAGG TCATGATTTT CTTTAGTGCC CATGGAGTGC CAGTCAGTTA TGTTGAAAAT 121 GCTGGTGATC CATATAGAGA TCAGATGGAA GAGTGCATTT TCTTGATAAT GAAAGAGCTG 181 AAAGCTAGAG AAATCAACAA TGATCATACC TTAGCTTACC AGAGCCGAGT TGGTCCTGTC 241 CAATGGTTGA AGCCATACAC TGATGAAGTT CTTGTTGAGC TTGGACAGAA AGGTGTTAAG 301 TCTCTGTTGG CTGTTCCAGT AAGCTTTGTG AGTGAGCATA TAGAGACTCT TGAAGAGATT 361 GATATGGAAT ACAAGGAGTT AGCTCTTGAA TCGGGAATTG AAAATTGGGG TCGTGTTCCT 421 GCTCTGAATT GCACCTCCTC TTTTATAACT GATCTGGCAG ATGCTGTTAT TGAAGCATTG 481 CCCTCGACAG TGGCAATGTC AACGTCCACT GGCACAGAGG AAGAAGTTGA CAATGATCCC 541 ATGCAATATT TTATGAAAAT GCTTTTCGGA GCACTATTAG CATTTGTTTT TCTGTTTTCA 601 CCAAAGATGG TATCGGCTTT TAAGAACATA CTTTAGGGAG AGATCCTTTA CAGAAATAGT 661 ACAGACAGAG ATAGCAAATC AGAGATGAAA CAATCCTTTA CAAAATAGAA GTTGTAAATC 721 TAAAATTATC TTCTATTATA CCAATATATA TAACTTGTAG AAACAGCATG TA Predicted gene structure (within gDNA segment 52248 to 47262): Exon 1 51648 51580 ( 69 n); cDNA 1 69 ( 69 n); score: 1.000 Intron 1 51579 51443 ( 137 n); Pd: 0.979 (s: 1.00), Pa: 0.728 (s: 0.96) Exon 2 51442 51290 ( 153 n); cDNA 70 222 ( 153 n); score: 0.967 Intron 2 51289 50624 ( 666 n); Pd: 0.949 (s: 0.96), Pa: 0.730 (s: 1.00) Exon 3 50623 50523 ( 101 n); cDNA 223 323 ( 101 n); score: 0.990 Intron 3 50522 49662 ( 861 n); Pd: 0.972 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 4 49661 49307 ( 355 n); cDNA 324 666 ( 343 n); score: 0.944 Intron 4 49306 49148 ( 159 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 5 49147 49116 ( 32 n); cDNA 667 698 ( 32 n); score: 0.938 MATCH C08SLm0119I05.1- SGN-E551787+ 0.962 710 0.920 C PGS_C08SLm0119I05.1-_SGN-E551787+ (51648 51580,51442 51290,50623 50523,49661 49307,49147 49116) Alignment (genomic DNA sequence = upper lines): CAAGGTTACA TCAAGTCCAT GGCAAACTTG ATTGAGCAGG AGTTACATAA TTTCACTAAG 51589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTTACA TCAAGTCCAT GGCAAACTTG ATTGAGCAGG AGTTACATAA TTTCACTAAG 60 CCTGAGGAGG TAGCATATCT TATTTTGGGT GTCCTCAGTT TCTGATCATC ATGGTTATGC 51529 ||||||||| CCTGAGGAG. .......... .......... .......... .......... .......... 69 TTTTAGTTTG GTGATGAACC TTTCTTTATC ATTACTGGGA ATTTTTTACT ATTTCCTACT 51469 .......... .......... .......... .......... .......... .......... 69 CAATTCTAAG AGGGATGTAT TTTCAGGTAA TGATTTTCTT TAGTGCCCAT GGAGTGCCAA 51409 || | |||||||||| |||||||||| ||||||||| .......... .......... ......GTCA TGATTTTCTT TAGTGCCCAT GGAGTGCCAG 103 TCAGTTATGT TGAAAATGCT GGTGATCCAT ATAGAGATCA GATGGAGGAG TGCATTTTCT 51349 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TCAGTTATGT TGAAAATGCT GGTGATCCAT ATAGAGATCA GATGGAAGAG TGCATTTTCT 163 TGATAATGAA AGAGCTGAAA GCTAGAGAAA TCAATAATGA TCATACCTTG GCTTACCAGG 51289 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| ||||||||| TGATAATGAA AGAGCTGAAA GCTAGAGAAA TCAACAATGA TCATACCTTA GCTTACCAG. 222 TTTCTCCTAA AGCTCAAGTC CTCCAGATCA CTTTTTGTGT TACCTGTATT CTCCAAATTC 51229 .......... .......... .......... .......... .......... .......... 222 TGCAATACCA TATACATTCA GCTCTTCCTA ATGGTGCCCT CTAAGTGATT TATTAGATAT 51169 .......... .......... .......... .......... .......... .......... 222 TGGAAATAAA TGTATTTTTC CACGCTGCAA TGACTCAAAG TTCAGTTTAG CCAAATTCTC 51109 .......... .......... .......... .......... .......... .......... 222 TGTGCTTTTA CGGATCATTC CATATTTTTC TCCTTTTTTT TTCCTTCCTC CTATTTTTAA 51049 .......... .......... .......... .......... .......... .......... 222 AACAGCCTTT TCTTGTGAGG AAGTTTGTAG GGGTTTGAGA CAGAATTTGA CTACCCTTTT 50989 .......... .......... .......... .......... .......... .......... 222 CCCCAATTTA CTTCTATTTT GTTGTTTCAC AAAATATTAC GTTTCCCCCA GAAATGCCAA 50929 .......... .......... .......... .......... .......... .......... 222 AGGTTCATCC CTCGATATTT CAGATTGATG TTAATTTTAC CTGTATTATT TCAAATTTTA 50869 .......... .......... .......... .......... .......... .......... 222 TGTGACTTCT TCTCTACCAA CTTCAGACTT TTTTACATTT CAGATATTCC TAACTCTTAT 50809 .......... .......... .......... .......... .......... .......... 222 CCAAACTCGG TGTTAATAAT CCTTCATCAC ATTTTACCCC TATAATATGT AAAATGAAGA 50749 .......... .......... .......... .......... .......... .......... 222 AAAGCAATTT CATTGATGTG GGGAAGTTCC TGTATACAAG GAATATACCA AAAACTAAAT 50689 .......... .......... .......... .......... .......... .......... 222 ATATTGGGAT GAAGGTACTT TCCCCTCGTG GTGAATTAAT TCAGTATTAT CCTTTTGCAT 50629 .......... .......... .......... .......... .......... .......... 222 TCCAGAGCCG AGTTGGTCCT GTCCAATGGT TGAAGCCATA CACTGATGAA GTTCTTGTTG 50569 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....AGCCG AGTTGGTCCT GTCCAATGGT TGAAGCCATA CACTGATGAA GTTCTTGTTG 277 AGCTTGGACA GAAAGGTGTA AAGTCTCTGT TGGCTGTTCC AGTAAGGTAT GCATTCTAGC 50509 |||||||||| ||||||||| |||||||||| |||||||||| |||||| AGCTTGGACA GAAAGGTGTT AAGTCTCTGT TGGCTGTTCC AGTAAG.... .......... 323 GGCTGAAACT TATCTTCTCA ATAAGTTATG GTGTCATGGG ATCAAAACTC AGGTACTATC 50449 .......... .......... .......... .......... .......... .......... 323 AATTTATTGG GTGATTTTTT ATTAGATTAA CAACCTGGGT TAGACTTTCT ATGGGCTGTT 50389 .......... .......... .......... .......... .......... .......... 323 TGCTAGTTTA ACATGATCAC ATTTTGTTGA AAACTATTTC AAGTCTACTA TGGTTTTTCT 50329 .......... .......... .......... .......... .......... .......... 323 AGCCAGACCT GATTTGCTGG AGATGGTAAC AAGAAGACCA CATGACTCAT GGGTCCTATT 50269 .......... .......... .......... .......... .......... .......... 323 GCTACAAATT GGCAACTTGA ATTTATAGAA AGGATCGTCA TGTATGGATG CTAATCTCTT 50209 .......... .......... .......... .......... .......... .......... 323 GTGCATGAGA GGTTGGAGAT TTAATAATGT GACTATAACC GCGAGAACCT CTTTGACTAG 50149 .......... .......... .......... .......... .......... .......... 323 TCAGAAGAAA AAAAAGGGGG TGAGATGTTT ATCTTACTTG TAGTGTCTTG TAATTGTTGA 50089 .......... .......... .......... .......... .......... .......... 323 GTTAGATGCA TTATCGTAAT GGTTCTCCTG CATATTCATA AAACTGATGT GGGAATTTGA 50029 .......... .......... .......... .......... .......... .......... 323 AGCGACAATA GCTAACTGTC TCTGAGATAC ATTTTAGTTT TGGGATTTTG GAAGGGACAA 49969 .......... .......... .......... .......... .......... .......... 323 TGCTTTTGTT GACTTGGTAG GAAGTGATTC TCTTTTGGTT GTGTGTGTTG TGAATGTCTG 49909 .......... .......... .......... .......... .......... .......... 323 ATGCTCTTTT GGTTGTGTGT GTTGTGAATG TCTGTGCAAT TGGGCATCAT GAAGTACAAA 49849 .......... .......... .......... .......... .......... .......... 323 TTGGAATTGT TTCACTGTGT ATGAGAGTTT AAATTATCAT AACCACTTCA AGAGTGTTTG 49789 .......... .......... .......... .......... .......... .......... 323 GCCTTTGTTG TCAATTAAGA TACTCTTCTC ATATGAATGT TTACTTTTTT CTTGTCTGCC 49729 .......... .......... .......... .......... .......... .......... 323 AGATAACACA ATCTCTTGCT TTATTCTTGA TATGTCACCT AATGTAATCA TGCTATTGGA 49669 .......... .......... .......... .......... .......... .......... 323 ATTTCAGCTT TGTGAGTGAG CATATAGAGA CTCTTGAAGA GATTGATATG GAATACAAGG 49609 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CTT TGTGAGTGAG CATATAGAGA CTCTTGAAGA GATTGATATG GAATACAAGG 376 AGTTAGCTCT TGAATCGGGA ATTGAAAATT GGGGTCGTGT TCCTGCTCTG AATTGCACCT 49549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTAGCTCT TGAATCGGGA ATTGAAAATT GGGGTCGTGT TCCTGCTCTG AATTGCACCT 436 CCTCTTTTAT AACTGATCTG GCAGATGCTG TTATTGAAGC ATTGCCCTCG ACAATGGCAA 49489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CCTCTTTTAT AACTGATCTG GCAGATGCTG TTATTGAAGC ATTGCCCTCG ACAGTGGCAA 496 TGTCAACGTC CACTGGCACA GAGGAAGAAG TTGACAATAA TCCGATGCAA TATTTTATGA 49429 |||||||||| |||||||||| |||||||||| |||||||| | ||| |||||| |||||||||| TGTCAACGTC CACTGGCACA GAGGAAGAAG TTGACAATGA TCCCATGCAA TATTTTATGA 556 AAATGCTTTT CGGATCAGTA TTAGCATTTG TTTTTCTGTT TTTGCCAAAG ATGGTATCGG 49369 |||||||||| |||| || || |||||||||| |||||||||| || |||||| |||||||||| AAATGCTTTT CGGAGCACTA TTAGCATTTG TTTTTCTGTT TTCACCAAAG ATGGTATCGG 616 CTTTTAATAA GAACATACTT TAGGGAGGAC AGAGAGAGAT CCTTTACAGA AATAGTACAG 49309 | ||| ||| |||||||||| | | | | ||||||| |||||||||| |||||||||| C-TTT--TAA GAACATACTT T----A-G-- -G-GAGAGAT CCTTTACAGA AATAGTACAG 664 AGATCAAAAA GCAATATTAT GGTGCTGCCT GGAGGTTTTT TGATTTTATA AACAATTTAC 49249 | AC........ .......... .......... .......... .......... .......... 666 AAGAGTTGTT TTTCCTACTA AAGATGCTTT TATTAGAGAG ACTGGATTCG ACATTATTGA 49189 .......... .......... .......... .......... .......... .......... 666 AGGTGCTAGT ATTCTGTTTC TGGGGCAGCA CTTGTGCATA GAAAGATAGC AAATCAGAGA 49129 | ||||||| |||||||||| .......... .......... .......... .......... .AGAGATAGC AAATCAGAGA 685 TGAAACAATC TTT 49116 |||||||||| || TGAAACAATC CTT 698 hqPGS_C08SLm0119I05.1-_SGN-E551787+ (51648 51580,51442 51290,50623 50523,49661 49307,49147 49116) ******************************************************************************** EST sequence 62 +strand 589 n (File: SGN-E551297+) 1 GCAACTTGAA TTTATAGAAA GGATCGTCAT GTATGGATGC TAATCTCTTG TGCATGAGAG 61 GTTGGAGATT TAATAATGTG ACTATAACCG CGAGAACCTC TTTGACTAGT CAGAAGAAAA 121 AAAAGGGGCT TTGTGAGTGA GCATATAGAG ACTCTTGAAG AGATTGATAT GGAATACAAG 181 GAGTTAGCTC TTGAATCGGG AATTGAAAAT TGGGGTCGTG TTCCTGCTCT GAATTGCACC 241 TCCTCTTTTA TAACTGATCT GGCAGATGCT GTTATTGAAG CATTGCCCTC GACAATGGCA 301 ATGTCAACGT CCACTGGCAC AGAGGAAGAA GTTGACAATA ATCCGATGCA ATATTTTATG 361 AAAATGCTTT TCGGATCAGT ATTAGCATTT GTTTTTCTGT TTTTGCCAAA GATGGTATCG 421 GCTTTTAATA AGAACATACT TTAGGGAGGA CAGAGAGAGA TCCTTTACAG AAATAGTACA 481 GAGATCAAAA AGCAATATTA TGGTGCTGCC TGGAGGTTTT TTGATTTTAT AAACAATTTA 541 CAAGAGTTGT TTTTCCTACT AAAGATGCTT TTATTAGAGA GACTGGATT Predicted gene structure (within gDNA segment 50857 to 48591): Exon 1 50257 50130 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 50129 49662 ( 468 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 49661 49201 ( 461 n); cDNA 129 589 ( 461 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E551297+ 1.000 589 1.000 C PGS_C08SLm0119I05.1-_SGN-E551297+ (50257 50130,49661 49201) Alignment (genomic DNA sequence = upper lines): GCAACTTGAA TTTATAGAAA GGATCGTCAT GTATGGATGC TAATCTCTTG TGCATGAGAG 50198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACTTGAA TTTATAGAAA GGATCGTCAT GTATGGATGC TAATCTCTTG TGCATGAGAG 60 GTTGGAGATT TAATAATGTG ACTATAACCG CGAGAACCTC TTTGACTAGT CAGAAGAAAA 50138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGAGATT TAATAATGTG ACTATAACCG CGAGAACCTC TTTGACTAGT CAGAAGAAAA 120 AAAAGGGGGT GAGATGTTTA TCTTACTTGT AGTGTCTTGT AATTGTTGAG TTAGATGCAT 50078 |||||||| AAAAGGGG.. .......... .......... .......... .......... .......... 128 TATCGTAATG GTTCTCCTGC ATATTCATAA AACTGATGTG GGAATTTGAA GCGACAATAG 50018 .......... .......... .......... .......... .......... .......... 128 CTAACTGTCT CTGAGATACA TTTTAGTTTT GGGATTTTGG AAGGGACAAT GCTTTTGTTG 49958 .......... .......... .......... .......... .......... .......... 128 ACTTGGTAGG AAGTGATTCT CTTTTGGTTG TGTGTGTTGT GAATGTCTGA TGCTCTTTTG 49898 .......... .......... .......... .......... .......... .......... 128 GTTGTGTGTG TTGTGAATGT CTGTGCAATT GGGCATCATG AAGTACAAAT TGGAATTGTT 49838 .......... .......... .......... .......... .......... .......... 128 TCACTGTGTA TGAGAGTTTA AATTATCATA ACCACTTCAA GAGTGTTTGG CCTTTGTTGT 49778 .......... .......... .......... .......... .......... .......... 128 CAATTAAGAT ACTCTTCTCA TATGAATGTT TACTTTTTTC TTGTCTGCCA GATAACACAA 49718 .......... .......... .......... .......... .......... .......... 128 TCTCTTGCTT TATTCTTGAT ATGTCACCTA ATGTAATCAT GCTATTGGAA TTTCAGCTTT 49658 |||| .......... .......... .......... .......... .......... ......CTTT 132 GTGAGTGAGC ATATAGAGAC TCTTGAAGAG ATTGATATGG AATACAAGGA GTTAGCTCTT 49598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGTGAGC ATATAGAGAC TCTTGAAGAG ATTGATATGG AATACAAGGA GTTAGCTCTT 192 GAATCGGGAA TTGAAAATTG GGGTCGTGTT CCTGCTCTGA ATTGCACCTC CTCTTTTATA 49538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCGGGAA TTGAAAATTG GGGTCGTGTT CCTGCTCTGA ATTGCACCTC CTCTTTTATA 252 ACTGATCTGG CAGATGCTGT TATTGAAGCA TTGCCCTCGA CAATGGCAAT GTCAACGTCC 49478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGATCTGG CAGATGCTGT TATTGAAGCA TTGCCCTCGA CAATGGCAAT GTCAACGTCC 312 ACTGGCACAG AGGAAGAAGT TGACAATAAT CCGATGCAAT ATTTTATGAA AATGCTTTTC 49418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGCACAG AGGAAGAAGT TGACAATAAT CCGATGCAAT ATTTTATGAA AATGCTTTTC 372 GGATCAGTAT TAGCATTTGT TTTTCTGTTT TTGCCAAAGA TGGTATCGGC TTTTAATAAG 49358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCAGTAT TAGCATTTGT TTTTCTGTTT TTGCCAAAGA TGGTATCGGC TTTTAATAAG 432 AACATACTTT AGGGAGGACA GAGAGAGATC CTTTACAGAA ATAGTACAGA GATCAAAAAG 49298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATACTTT AGGGAGGACA GAGAGAGATC CTTTACAGAA ATAGTACAGA GATCAAAAAG 492 CAATATTATG GTGCTGCCTG GAGGTTTTTT GATTTTATAA ACAATTTACA AGAGTTGTTT 49238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATTATG GTGCTGCCTG GAGGTTTTTT GATTTTATAA ACAATTTACA AGAGTTGTTT 552 TTCCTACTAA AGATGCTTTT ATTAGAGAGA CTGGATT 49201 |||||||||| |||||||||| |||||||||| ||||||| TTCCTACTAA AGATGCTTTT ATTAGAGAGA CTGGATT 589 hqPGS_C08SLm0119I05.1-_SGN-E551297+ (50257 50130,49661 49201) ******************************************************************************** EST sequence 101 +strand 702 n (File: SGN-E276279+) 1 TTGTTGTACT GCCTTTATAT CCTCAATACT CTATCTCTAC AACTGGTTCA AGTGTCCGTG 61 CCCTTCAGAA TATTTTCAAA GAAGACTCTT ATCTGTCCAG ACTGCCAGTT GCTGTCATTG 121 AATCCTGGTA CCAACGACAA GGTTACATCA AGTCCATGGC AAACTTGATT GAGCAGGAGT 181 TACATAATTT CACTAAGCCT GAGGAGGTCA TGATTTTCTT TAGTGCCCAT GGAGTGCCAG 241 TCAGTTATGT TGAAAATGCT GGTGATCCAT ATAGAGATCA GATGGAAGAG TGCATTTTCT 301 TGATAATGAA AGAGCTGAAA GCTAGAGAAA TCAACAATGA TCATACCTTA GCTTACCAGA 361 GCCGAGTTGG TCCTGTCCAA TGGTTGAAGC CATACACTGA TGAAGTTCTT GTTGAGCTTG 421 GACAGAAAGG TGTTAAGTCT CTGTTGGCTG TTCCAGTAAG CTTTGTGAGT GAGCATATAG 481 AGACTCTTGA AGAGATTGAT ATGGAATACA AGGAGTTAGC TCTTGAATCG GGAATTGAAA 541 ATTGGGGTCG TGTTCCTGCT CTGAATTGCA CCTCCTCTTT TATAACTGAT CTGGCAGATG 601 CTGTTATTGA AGCATTGCCC TCGACAGTGG CAATGTCAAC GTCCACTGGC ACAGAGGAAG 661 AAGTTGACAA TGATCCCATG CAATATTTTA TGAAAATGCT TT Predicted gene structure (within gDNA segment 52509 to 48810): Exon 1 51909 51831 ( 79 n); cDNA 1 79 ( 79 n); score: 0.987 Intron 1 51830 51707 ( 124 n); Pd: 0.990 (s: 0.98), Pa: 0.885 (s: 0.96) Exon 2 51706 51580 ( 127 n); cDNA 80 206 ( 127 n); score: 0.984 Intron 2 51579 51443 ( 137 n); Pd: 0.979 (s: 1.00), Pa: 0.728 (s: 0.96) Exon 3 51442 51290 ( 153 n); cDNA 207 359 ( 153 n); score: 0.967 Intron 3 51289 50624 ( 666 n); Pd: 0.949 (s: 0.96), Pa: 0.730 (s: 1.00) Exon 4 50623 50523 ( 101 n); cDNA 360 460 ( 101 n); score: 0.990 Intron 4 50522 49662 ( 861 n); Pd: 0.972 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 5 49661 49420 ( 242 n); cDNA 461 702 ( 242 n); score: 0.988 MATCH C08SLm0119I05.1- SGN-E276279+ 0.983 702 1.000 C PGS_C08SLm0119I05.1-_SGN-E276279+ (51909 51831,51706 51580,51442 51290,50623 50523,49661 49420) Alignment (genomic DNA sequence = upper lines): TTGTTGTACT GCCTTTATAT CCTCAATACT CTATCTCTAC AACTGGTTCT AGTGTCCGTG 51850 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTGTTGTACT GCCTTTATAT CCTCAATACT CTATCTCTAC AACTGGTTCA AGTGTCCGTG 60 CCCTTCAGAA TATTTTCAAG TAACTCTCTT TTTCTTTTCA ATTTGGTTAC TGCATTTATG 51790 |||||||||| ||||||||| CCCTTCAGAA TATTTTCAA. .......... .......... .......... .......... 79 GAGTCTCATG TTCTTAAATT GAAGTGTATG CACATACATT TTCCTGTCTC TGATCAATAT 51730 .......... .......... .......... .......... .......... .......... 79 CTGAACTTTT TGTGCACTCC CAGAGGAGAC TCTTATCTGT CCAGACTGCC AGTTGCAGTC 51670 || |||| |||||||||| |||||||||| |||||| ||| .......... .......... ...AGAAGAC TCTTATCTGT CCAGACTGCC AGTTGCTGTC 116 ATTGAATCCT GGTACCAACG ACAAGGTTAC ATCAAGTCCA TGGCAAACTT GATTGAGCAG 51610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATCCT GGTACCAACG ACAAGGTTAC ATCAAGTCCA TGGCAAACTT GATTGAGCAG 176 GAGTTACATA ATTTCACTAA GCCTGAGGAG GTAGCATATC TTATTTTGGG TGTCCTCAGT 51550 |||||||||| |||||||||| |||||||||| GAGTTACATA ATTTCACTAA GCCTGAGGAG .......... .......... .......... 206 TTCTGATCAT CATGGTTATG CTTTTAGTTT GGTGATGAAC CTTTCTTTAT CATTACTGGG 51490 .......... .......... .......... .......... .......... .......... 206 AATTTTTTAC TATTTCCTAC TCAATTCTAA GAGGGATGTA TTTTCAGGTA ATGATTTTCT 51430 || |||||||||| .......... .......... .......... .......... .......GTC ATGATTTTCT 219 TTAGTGCCCA TGGAGTGCCA ATCAGTTATG TTGAAAATGC TGGTGATCCA TATAGAGATC 51370 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTAGTGCCCA TGGAGTGCCA GTCAGTTATG TTGAAAATGC TGGTGATCCA TATAGAGATC 279 AGATGGAGGA GTGCATTTTC TTGATAATGA AAGAGCTGAA AGCTAGAGAA ATCAATAATG 51310 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AGATGGAAGA GTGCATTTTC TTGATAATGA AAGAGCTGAA AGCTAGAGAA ATCAACAATG 339 ATCATACCTT GGCTTACCAG GTTTCTCCTA AAGCTCAAGT CCTCCAGATC ACTTTTTGTG 51250 |||||||||| ||||||||| ATCATACCTT AGCTTACCAG .......... .......... .......... .......... 359 TTACCTGTAT TCTCCAAATT CTGCAATACC ATATACATTC AGCTCTTCCT AATGGTGCCC 51190 .......... .......... .......... .......... .......... .......... 359 TCTAAGTGAT TTATTAGATA TTGGAAATAA ATGTATTTTT CCACGCTGCA ATGACTCAAA 51130 .......... .......... .......... .......... .......... .......... 359 GTTCAGTTTA GCCAAATTCT CTGTGCTTTT ACGGATCATT CCATATTTTT CTCCTTTTTT 51070 .......... .......... .......... .......... .......... .......... 359 TTTCCTTCCT CCTATTTTTA AAACAGCCTT TTCTTGTGAG GAAGTTTGTA GGGGTTTGAG 51010 .......... .......... .......... .......... .......... .......... 359 ACAGAATTTG ACTACCCTTT TCCCCAATTT ACTTCTATTT TGTTGTTTCA CAAAATATTA 50950 .......... .......... .......... .......... .......... .......... 359 CGTTTCCCCC AGAAATGCCA AAGGTTCATC CCTCGATATT TCAGATTGAT GTTAATTTTA 50890 .......... .......... .......... .......... .......... .......... 359 CCTGTATTAT TTCAAATTTT ATGTGACTTC TTCTCTACCA ACTTCAGACT TTTTTACATT 50830 .......... .......... .......... .......... .......... .......... 359 TCAGATATTC CTAACTCTTA TCCAAACTCG GTGTTAATAA TCCTTCATCA CATTTTACCC 50770 .......... .......... .......... .......... .......... .......... 359 CTATAATATG TAAAATGAAG AAAAGCAATT TCATTGATGT GGGGAAGTTC CTGTATACAA 50710 .......... .......... .......... .......... .......... .......... 359 GGAATATACC AAAAACTAAA TATATTGGGA TGAAGGTACT TTCCCCTCGT GGTGAATTAA 50650 .......... .......... .......... .......... .......... .......... 359 TTCAGTATTA TCCTTTTGCA TTCCAGAGCC GAGTTGGTCC TGTCCAATGG TTGAAGCCAT 50590 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGCC GAGTTGGTCC TGTCCAATGG TTGAAGCCAT 393 ACACTGATGA AGTTCTTGTT GAGCTTGGAC AGAAAGGTGT AAAGTCTCTG TTGGCTGTTC 50530 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACACTGATGA AGTTCTTGTT GAGCTTGGAC AGAAAGGTGT TAAGTCTCTG TTGGCTGTTC 453 CAGTAAGGTA TGCATTCTAG CGGCTGAAAC TTATCTTCTC AATAAGTTAT GGTGTCATGG 50470 ||||||| CAGTAAG... .......... .......... .......... .......... .......... 460 GATCAAAACT CAGGTACTAT CAATTTATTG GGTGATTTTT TATTAGATTA ACAACCTGGG 50410 .......... .......... .......... .......... .......... .......... 460 TTAGACTTTC TATGGGCTGT TTGCTAGTTT AACATGATCA CATTTTGTTG AAAACTATTT 50350 .......... .......... .......... .......... .......... .......... 460 CAAGTCTACT ATGGTTTTTC TAGCCAGACC TGATTTGCTG GAGATGGTAA CAAGAAGACC 50290 .......... .......... .......... .......... .......... .......... 460 ACATGACTCA TGGGTCCTAT TGCTACAAAT TGGCAACTTG AATTTATAGA AAGGATCGTC 50230 .......... .......... .......... .......... .......... .......... 460 ATGTATGGAT GCTAATCTCT TGTGCATGAG AGGTTGGAGA TTTAATAATG TGACTATAAC 50170 .......... .......... .......... .......... .......... .......... 460 CGCGAGAACC TCTTTGACTA GTCAGAAGAA AAAAAAGGGG GTGAGATGTT TATCTTACTT 50110 .......... .......... .......... .......... .......... .......... 460 GTAGTGTCTT GTAATTGTTG AGTTAGATGC ATTATCGTAA TGGTTCTCCT GCATATTCAT 50050 .......... .......... .......... .......... .......... .......... 460 AAAACTGATG TGGGAATTTG AAGCGACAAT AGCTAACTGT CTCTGAGATA CATTTTAGTT 49990 .......... .......... .......... .......... .......... .......... 460 TTGGGATTTT GGAAGGGACA ATGCTTTTGT TGACTTGGTA GGAAGTGATT CTCTTTTGGT 49930 .......... .......... .......... .......... .......... .......... 460 TGTGTGTGTT GTGAATGTCT GATGCTCTTT TGGTTGTGTG TGTTGTGAAT GTCTGTGCAA 49870 .......... .......... .......... .......... .......... .......... 460 TTGGGCATCA TGAAGTACAA ATTGGAATTG TTTCACTGTG TATGAGAGTT TAAATTATCA 49810 .......... .......... .......... .......... .......... .......... 460 TAACCACTTC AAGAGTGTTT GGCCTTTGTT GTCAATTAAG ATACTCTTCT CATATGAATG 49750 .......... .......... .......... .......... .......... .......... 460 TTTACTTTTT TCTTGTCTGC CAGATAACAC AATCTCTTGC TTTATTCTTG ATATGTCACC 49690 .......... .......... .......... .......... .......... .......... 460 TAATGTAATC ATGCTATTGG AATTTCAGCT TTGTGAGTGA GCATATAGAG ACTCTTGAAG 49630 || |||||||||| |||||||||| |||||||||| .......... .......... ........CT TTGTGAGTGA GCATATAGAG ACTCTTGAAG 492 AGATTGATAT GGAATACAAG GAGTTAGCTC TTGAATCGGG AATTGAAAAT TGGGGTCGTG 49570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGATAT GGAATACAAG GAGTTAGCTC TTGAATCGGG AATTGAAAAT TGGGGTCGTG 552 TTCCTGCTCT GAATTGCACC TCCTCTTTTA TAACTGATCT GGCAGATGCT GTTATTGAAG 49510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTGCTCT GAATTGCACC TCCTCTTTTA TAACTGATCT GGCAGATGCT GTTATTGAAG 612 CATTGCCCTC GACAATGGCA ATGTCAACGT CCACTGGCAC AGAGGAAGAA GTTGACAATA 49450 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| CATTGCCCTC GACAGTGGCA ATGTCAACGT CCACTGGCAC AGAGGAAGAA GTTGACAATG 672 ATCCGATGCA ATATTTTATG AAAATGCTTT 49420 |||| ||||| |||||||||| |||||||||| ATCCCATGCA ATATTTTATG AAAATGCTTT 702 hqPGS_C08SLm0119I05.1-_SGN-E276279+ (51909 51831,51706 51580,51442 51290,50623 50523,49661 49420) ******************************************************************************** EST sequence 9 -strand 488 n (File: SGN-E378958-) 1 GCAAAGTCAA CGTCCCCTGG CCCAGAGGAA GAAGTTGACA ATAATCCGAG GCAATATTTT 61 ATGAAAATGC TTTTCGGATC CGTATTAGCC TTTGTTTTTC TGTTTTTCCC AAAGAGGGGA 121 TCGGCTTTTT AATACGGCCC CCCTTAGGGG GGGCCGGGGG GGATCCCTTT CCGAAATTGT 181 TCCGGGGTCC AAAAGCCATT TTTTGGGGCC CCCCGGGGGT TTTTTGATTT TTTAAACCAT 241 TTTCCAGGGG TGTTTTTCCC CCTAAAAAAG CTTTTTTTAG GGGGGCCGGG TTCGCCCTTA 301 TTGAAGGGGC TAGTTTTTTG TTTTTGGGGC CCCCCTTGTG CCTTGAAAGA TAGCCAATCC 361 GGGGGGGAAC CATTTTTGGG GCCTCCGTTT TAGGGAATAA AAAAATCTTC TATTTTTTTT 421 GGAAATCTCC GAAATATTTT TTTTTATCCC AAAAATTTTT CCTTTGTTAA AAAAAAAAAA 481 AAAAAAAA Predicted gene structure (within gDNA segment 50300 to 44976): Exon 1 49492 49008 ( 485 n); cDNA 1 485 ( 485 n); score: 0.787 MATCH C08SLm0119I05.1- SGN-E378958- 0.787 485 0.994 C PGS_C08SLm0119I05.1-_SGN-E378958- (49492 49008) Alignment (genomic DNA sequence = upper lines): GCAATGTCAA CGTCCACTGG CACAGAGGAA GAAGTTGACA ATAATCCGAT GCAATATTTT 49433 |||| ||||| ||||| |||| | |||||||| |||||||||| ||||||||| |||||||||| GCAAAGTCAA CGTCCCCTGG CCCAGAGGAA GAAGTTGACA ATAATCCGAG GCAATATTTT 60 ATGAAAATGC TTTTCGGATC AGTATTAGCA TTTGTTTTTC TGTTTTTGCC AAAGATGGTA 49373 |||||||||| |||||||||| |||||||| |||||||||| ||||||| || ||||| || | ATGAAAATGC TTTTCGGATC CGTATTAGCC TTTGTTTTTC TGTTTTTCCC AAAGAGGGGA 120 TCGGC-TTTT AATAAGAACA TACTTTAGGG AGGACAGAGA GAGATCCTTT ACAGAAATAG 49314 ||||| |||| |||| | | | |||||| || | | | | ||||| || | ||||| | TCGGCTTTTT AATACG-GCC CCCCTTAGGG GGGGCCGGGG GGGATCCCTT TCCGAAATTG 179 TACAGAGATC AAAAAGCAAT ATTATGGTGC TGCCTGGAGG TTTTTTGATT TTATAAACAA 49254 | | | | || |||||| || || ||| || || || || |||||||||| || ||||| | TTCCGGGGTC CAAAAGCCAT TTTTTGGGGC CCCCCGGGGG TTTTTTGATT TTTTAAACCA 239 TTTACAAGAG TTGTTTTTCC TACTAAAGAT GCTTTTATTA GAGAGACTGG ATTCGACATT 49194 ||| | || | ||||||||| ||||| | |||||| ||| | | | | || |||| | || TTTTCCAGGG GTGTTTTTCC CCCTAAAAAA GCTTTTTTTA GGGGGGCCGG GTTCGCCCTT 299 ATTGAAGGTG CTAGTATTCT GTTTCTGGGG CAGCACTTGT GCATAGAAAG ATAGCAAATC 49134 |||||||| | ||||| || | |||| ||||| | | ||||| || | ||||| ||||| |||| ATTGAAGGGG CTAGTTTTTT GTTTTTGGGG CCCCCCTTGT GCCTTGAAAG ATAGCCAATC 359 AGAGATGAAA CAATCTTTGT GGCTTCAGTT TTAGAGATTA AAAATATCTT CTATTTTTTT 49074 | | | || | || |||| ||| || ||| |||| || || |||| ||||| |||||||||| CGGGGGGGAA CCATTTTTGG GGCCTCCGTT TTAGGGAATA AAAAAATCTT CTATTTTTTT 419 TGTATATCTA CGAATTATCT TCTATTATAC AATAAATTTA TCATTTGTAG AAACAGTATG 49014 || | |||| |||| ||| | | | |||| | | |||||| || ||||| ||| | | TGGAAATCTC CGAAATATTT TTTTTTATCC CAAAAATTTT TCCTTTGTTA AAAAAAAAAA 479 TACAAA 49008 | ||| AAAAAA 485 hqPGS_C08SLm0119I05.1-_SGN-E378958- (49492 49008) ******************************************************************************** EST sequence 41 -strand 431 n (File: SGN-E206849-) 1 TTTATGAAAA TGCTTTTCGG ATCAGTATTA GCATTTGTTT TTCTGTTTTT GCCAAAGATG 61 GTATCGGCTT TTAATAAGAA CATACTTTAG GGAGGACAGA GAGAGATCCT TTACAGAAAT 121 AGTACAGAGA TCAAAAAGCA ATATTATGGT GCTGCCTGGA GGTTTTTTGA TTTTATAAAC 181 AATTTACAAG AGTTGTTTTT CCTACTAAAG ATGCTTTTAT TAGAGAGACT GGATTCGACA 241 TTATTGAAGG TGCTAGTATT CTGTTTCTGG GGCAGCACTT GTGCATAGAA AGATAGCAAA 301 TCAGAGATGA AACAATCTTT GTGGCTTCAG TTTTAGAGAT TAAAAATATC TTCTATTTTT 361 TTTGTATATC TACGAATTAT CTTCTATTAT ACAATAAATT TATCATTTGT AAAAAAAAAA 421 AAAAAAAAAA A Predicted gene structure (within gDNA segment 50045 to 48225): Exon 1 49435 49008 ( 428 n); cDNA 1 428 ( 428 n); score: 0.981 MATCH C08SLm0119I05.1- SGN-E206849- 0.981 428 0.993 C PGS_C08SLm0119I05.1-_SGN-E206849- (49435 49008) Alignment (genomic DNA sequence = upper lines): TTTATGAAAA TGCTTTTCGG ATCAGTATTA GCATTTGTTT TTCTGTTTTT GCCAAAGATG 49376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGAAAA TGCTTTTCGG ATCAGTATTA GCATTTGTTT TTCTGTTTTT GCCAAAGATG 60 GTATCGGCTT TTAATAAGAA CATACTTTAG GGAGGACAGA GAGAGATCCT TTACAGAAAT 49316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCGGCTT TTAATAAGAA CATACTTTAG GGAGGACAGA GAGAGATCCT TTACAGAAAT 120 AGTACAGAGA TCAAAAAGCA ATATTATGGT GCTGCCTGGA GGTTTTTTGA TTTTATAAAC 49256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGAGA TCAAAAAGCA ATATTATGGT GCTGCCTGGA GGTTTTTTGA TTTTATAAAC 180 AATTTACAAG AGTTGTTTTT CCTACTAAAG ATGCTTTTAT TAGAGAGACT GGATTCGACA 49196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTACAAG AGTTGTTTTT CCTACTAAAG ATGCTTTTAT TAGAGAGACT GGATTCGACA 240 TTATTGAAGG TGCTAGTATT CTGTTTCTGG GGCAGCACTT GTGCATAGAA AGATAGCAAA 49136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGAAGG TGCTAGTATT CTGTTTCTGG GGCAGCACTT GTGCATAGAA AGATAGCAAA 300 TCAGAGATGA AACAATCTTT GTGGCTTCAG TTTTAGAGAT TAAAAATATC TTCTATTTTT 49076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGATGA AACAATCTTT GTGGCTTCAG TTTTAGAGAT TAAAAATATC TTCTATTTTT 360 TTTGTATATC TACGAATTAT CTTCTATTAT ACAATAAATT TATCATTTGT AGAAACAGTA 49016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||| | | TTTGTATATC TACGAATTAT CTTCTATTAT ACAATAAATT TATCATTTGT AAAAAAAAAA 420 TGTACAAA 49008 | ||| AAAAAAAA 428 hqPGS_C08SLm0119I05.1-_SGN-E206849- (49435 49008) ******************************************************************************** EST sequence 10 -strand 632 n (File: SGN-E379435-) 1 TTGGCTGTTC CAGTAAGCTT TGTGAGTGAG CATATAGAGA CTCTTGAAGA GATTGATATG 61 GAATACAAGG AGTTAGCTCT TGAATCGGGA ATTGAAAATT GGGGTCGTGT TCCTGCTCTG 121 AATTGCACCT CCTCTTTTAT AACTGATCTG GCAGATGCTG TTATTGAAGC ATTGCCCTCG 181 ACAATGGCAA TGTCAACGTC CACTGGCACA GAGGAAGAAG TTGACAATAA TCCGATGCAA 241 TATTTTATGA AAATGCTTTT CGGATCAGTA TTAGCATTTG TTTTTCTGTT TTTGCCAAAG 301 ATGGTATCGG CTTTGTAATA CGAACTCACT ATAGGGAGGA CAGAGAGAGA TCCTTTACAG 361 AAATAGTACA GAGATCAAAA AGCAATATTA TGGTGCTGCC TGGAGGTTTT TTGATTTTAT 421 AAACAATTTA CAAGAGTTGT TTTTCCTACT AAAGATGCTT TTATTAGAGA GACTGGATTC 481 GACATTATTG AAGGTGCTAG TATTCTGTTT CTGGGGCAGC AGTTGTGCAT AGAAAGATAG 541 CAAATCAGAG ATGAAACAAT CTTTGTGGCT TCAGTTTTAG AGATTAAAAA TATCTTCTAT 601 TTTTTTTGTA TCACTACGAA TTATCTTCTA TA Predicted gene structure (within gDNA segment 50423 to 48439): Exon 1 49661 49049 ( 613 n); cDNA 18 631 ( 614 n); score: 0.985 MATCH C08SLm0119I05.1- SGN-E379435- 0.985 613 0.970 C PGS_C08SLm0119I05.1-_SGN-E379435- (49661 49049) Alignment (genomic DNA sequence = upper lines): CTTTGTGAGT GAGCATATAG AGACTCTTGA AGAGATTGAT ATGGAATACA AGGAGTTAGC 49602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTGAGT GAGCATATAG AGACTCTTGA AGAGATTGAT ATGGAATACA AGGAGTTAGC 77 TCTTGAATCG GGAATTGAAA ATTGGGGTCG TGTTCCTGCT CTGAATTGCA CCTCCTCTTT 49542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATCG GGAATTGAAA ATTGGGGTCG TGTTCCTGCT CTGAATTGCA CCTCCTCTTT 137 TATAACTGAT CTGGCAGATG CTGTTATTGA AGCATTGCCC TCGACAATGG CAATGTCAAC 49482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAACTGAT CTGGCAGATG CTGTTATTGA AGCATTGCCC TCGACAATGG CAATGTCAAC 197 GTCCACTGGC ACAGAGGAAG AAGTTGACAA TAATCCGATG CAATATTTTA TGAAAATGCT 49422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCACTGGC ACAGAGGAAG AAGTTGACAA TAATCCGATG CAATATTTTA TGAAAATGCT 257 TTTCGGATCA GTATTAGCAT TTGTTTTTCT GTTTTTGCCA AAGATGGTAT CGGCTTT-TA 49363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTTCGGATCA GTATTAGCAT TTGTTTTTCT GTTTTTGCCA AAGATGGTAT CGGCTTTGTA 317 ATAAGAACAT ACTTTAGGGA GGACAGAGAG AGATCCTTTA CAGAAATAGT ACAGAGATCA 49303 ||| |||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGAACTC ACTATAGGGA GGACAGAGAG AGATCCTTTA CAGAAATAGT ACAGAGATCA 377 AAAAGCAATA TTATGGTGCT GCCTGGAGGT TTTTTGATTT TATAAACAAT TTACAAGAGT 49243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCAATA TTATGGTGCT GCCTGGAGGT TTTTTGATTT TATAAACAAT TTACAAGAGT 437 TGTTTTTCCT ACTAAAGATG CTTTTATTAG AGAGACTGGA TTCGACATTA TTGAAGGTGC 49183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTTCCT ACTAAAGATG CTTTTATTAG AGAGACTGGA TTCGACATTA TTGAAGGTGC 497 TAGTATTCTG TTTCTGGGGC AGCACTTGTG CATAGAAAGA TAGCAAATCA GAGATGAAAC 49123 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TAGTATTCTG TTTCTGGGGC AGCAGTTGTG CATAGAAAGA TAGCAAATCA GAGATGAAAC 557 AATCTTTGTG GCTTCAGTTT TAGAGATTAA AAATATCTTC TATTTTTTTT GTATATCTAC 49063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| AATCTTTGTG GCTTCAGTTT TAGAGATTAA AAATATCTTC TATTTTTTTT GTATCACTAC 617 GAATTATCTT CTAT 49049 |||||||||| |||| GAATTATCTT CTAT 631 hqPGS_C08SLm0119I05.1-_SGN-E379435- (49661 49049) ******************************************************************************** EST sequence 92 +strand 362 n (File: SGN-E206726+) 1 ATGACTCAAA GTTCAGTTTA GCCAAATTCT CTGTGCTTTT ACGGATCATT CCATATTTTT 61 CTCCTTTTTT TTTCCTTCCT CCTATTTTTA AAACAGCCTT TTCTTGTGAG GAAGTTTGTA 121 GGGGTTTGAG ACAGAATTTG ACTACCCTTT TCCCCAATTT ACTTCTATTT TGTTGTTTCA 181 CAAAATATTA CGTTTCCCCC AGAAATGCCA AAGGTTCATC CCTCGATATT TCAGATTGAT 241 GTTAATTTTA CCTGTATTAT TTCAAATTTT ATGTGACTTC TTCTCTACCA ACTTCAGACT 301 TTTTTACATT ACAGATATTC CTAACTATTA TCCAAACTCG GTGTTAATAA TCCTTCATCA 361 CA Predicted gene structure (within gDNA segment 51739 to 50168): Exon 1 51139 50778 ( 362 n); cDNA 1 362 ( 362 n); score: 0.994 MATCH C08SLm0119I05.1- SGN-E206726+ 0.994 362 1.000 C PGS_C08SLm0119I05.1-_SGN-E206726+ (51139 50778) Alignment (genomic DNA sequence = upper lines): ATGACTCAAA GTTCAGTTTA GCCAAATTCT CTGTGCTTTT ACGGATCATT CCATATTTTT 51080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACTCAAA GTTCAGTTTA GCCAAATTCT CTGTGCTTTT ACGGATCATT CCATATTTTT 60 CTCCTTTTTT TTTCCTTCCT CCTATTTTTA AAACAGCCTT TTCTTGTGAG GAAGTTTGTA 51020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTTTTT TTTCCTTCCT CCTATTTTTA AAACAGCCTT TTCTTGTGAG GAAGTTTGTA 120 GGGGTTTGAG ACAGAATTTG ACTACCCTTT TCCCCAATTT ACTTCTATTT TGTTGTTTCA 50960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTTGAG ACAGAATTTG ACTACCCTTT TCCCCAATTT ACTTCTATTT TGTTGTTTCA 180 CAAAATATTA CGTTTCCCCC AGAAATGCCA AAGGTTCATC CCTCGATATT TCAGATTGAT 50900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATATTA CGTTTCCCCC AGAAATGCCA AAGGTTCATC CCTCGATATT TCAGATTGAT 240 GTTAATTTTA CCTGTATTAT TTCAAATTTT ATGTGACTTC TTCTCTACCA ACTTCAGACT 50840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTTTA CCTGTATTAT TTCAAATTTT ATGTGACTTC TTCTCTACCA ACTTCAGACT 300 TTTTTACATT TCAGATATTC CTAACTCTTA TCCAAACTCG GTGTTAATAA TCCTTCATCA 50780 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTTTTACATT ACAGATATTC CTAACTATTA TCCAAACTCG GTGTTAATAA TCCTTCATCA 360 CA 50778 || CA 362 hqPGS_C08SLm0119I05.1-_SGN-E206726+ (51139 50778) ******************************************************************************** EST sequence 69 +strand 673 n (File: SGN-E211321+) 1 TGTCTTTACA TCGCCCAGTG CACAAGAGAG ATGTAGTTGG CAAGACGTTC TGCTCTGTTG 61 GATTGTCTAC ATTTCCGGGG AGCATCGTTG AGTCTTCTTC CCAGACAACT GAAGAAAAGA 121 TCGGAGTGCT ACTTTTGAAT CTTGGAGGGC CAGACACACT TCATGATGTC CAGCCTTTTC 181 TGTTCAACTT ATTTGCTGAT CCTGACATTA TACGTCTACC CAGATTGTTC AGATTTCTCC 241 AGCGCCCATT GGCACAACTT ATATCTGTTC TCCGAGCTCC GAAAAGCAAG GAAGGATATG 301 CTGCAATTGG AGGTGGTTCT CCTTTACGAA AAATAACAGA TGAGCAGGCT AGTGTACTAA 361 AAATTGCACT AGAAACAAAG GAAGTACCAG CTAATGTCTA TGTTGCGATG AGGTATTGGC 421 ACCCGTTCAC CGAGGAAGCT GTTCACCAGA TAAAAAGAGA TGGGATTACA AAGCTTGTTG 481 TACTGCCTTT ATATCCTCAA TACTCTATCT CTACAACTGG TTCTAGTGTC CGTGCCCTTC 541 AGAATATTTT CAAAGGAGAC TCTTATCTGT CCAGACTGCC AGTTGCAGTC ATTGAATCCT 601 GGTACAACGA CAAGGTTACA TCAAGTCCAT GGCAAACTTG ATTGAGCAGG AGTTACATAA 661 TTTCACTAAG CCT Predicted gene structure (within gDNA segment 55995 to 50976): Exon 1 55395 55193 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 55085 54942 ( 144 n); cDNA 204 347 ( 144 n); score: 1.000 Intron 2 54941 54832 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 54831 54730 ( 102 n); cDNA 348 449 ( 102 n); score: 1.000 Intron 3 54729 51935 (2795 n); Pd: 0.993 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51934 51831 ( 104 n); cDNA 450 553 ( 104 n); score: 1.000 Intron 4 51830 51707 ( 124 n); Pd: 0.990 (s: 1.00), Pa: 0.885 (s: 1.00) Exon 5 51706 51586 ( 121 n); cDNA 554 673 ( 120 n); score: 0.992 MATCH C08SLm0119I05.1- SGN-E211321+ 0.999 674 1.001 C PGS_C08SLm0119I05.1-_SGN-E211321+ (55395 55193,55085 54942,54831 54730,51934 51831,51706 51586) Alignment (genomic DNA sequence = upper lines): TGTCTTTACA TCGCCCAGTG CACAAGAGAG ATGTAGTTGG CAAGACGTTC TGCTCTGTTG 55336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTACA TCGCCCAGTG CACAAGAGAG ATGTAGTTGG CAAGACGTTC TGCTCTGTTG 60 GATTGTCTAC ATTTCCGGGG AGCATCGTTG AGTCTTCTTC CCAGACAACT GAAGAAAAGA 55276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGTCTAC ATTTCCGGGG AGCATCGTTG AGTCTTCTTC CCAGACAACT GAAGAAAAGA 120 TCGGAGTGCT ACTTTTGAAT CTTGGAGGGC CAGACACACT TCATGATGTC CAGCCTTTTC 55216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAGTGCT ACTTTTGAAT CTTGGAGGGC CAGACACACT TCATGATGTC CAGCCTTTTC 180 TGTTCAACTT ATTTGCTGAT CCTGTATGCT AACAATCAGT CTTAACTCAT TTTTTTTCCT 55156 |||||||||| |||||||||| ||| TGTTCAACTT ATTTGCTGAT CCT....... .......... .......... .......... 203 AAGCTGGAGA TTTTGGGCAA TTTCGTTCTT TGTTTGTGTT TATGCTAATG GTATGAATTT 55096 .......... .......... .......... .......... .......... .......... 203 CACATGGCAG GACATTATAC GTCTACCCAG ATTGTTCAGA TTTCTCCAGC GCCCATTGGC 55036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GACATTATAC GTCTACCCAG ATTGTTCAGA TTTCTCCAGC GCCCATTGGC 253 ACAACTTATA TCTGTTCTCC GAGCTCCGAA AAGCAAGGAA GGATATGCTG CAATTGGAGG 54976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACTTATA TCTGTTCTCC GAGCTCCGAA AAGCAAGGAA GGATATGCTG CAATTGGAGG 313 TGGTTCTCCT TTACGAAAAA TAACAGATGA GCAGGTATAG GAAAACCCCT TTTTATTTAT 54916 |||||||||| |||||||||| |||||||||| |||| TGGTTCTCCT TTACGAAAAA TAACAGATGA GCAG...... .......... .......... 347 GTGCTCTGTG CTAAAAAATT CTTTCTACTT CATTATGCTG GTGTCATTTT CAACTTGTTA 54856 .......... .......... .......... .......... .......... .......... 347 ACCCTCTTAA GCTCATCATT GCAGGCTAGT GTACTAAAAA TTGCACTAGA AACAAAGGAA 54796 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GCTAGT GTACTAAAAA TTGCACTAGA AACAAAGGAA 383 GTACCAGCTA ATGTCTATGT TGCGATGAGG TATTGGCACC CGTTCACCGA GGAAGCTGTT 54736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCAGCTA ATGTCTATGT TGCGATGAGG TATTGGCACC CGTTCACCGA GGAAGCTGTT 443 CACCAGGTAG GCTCAAAATG CATCCTCTTG GTTCTTCCAG TTGACATTTT TTTGTCTTGA 54676 |||||| CACCAG.... .......... .......... .......... .......... .......... 449 TCTTTTGTTT GATCTTGTCT GTGTCTTCTC TCATGTGCTC ACGATAATCT CAACAAGTCA 54616 .......... .......... .......... .......... .......... .......... 449 TTAGAACACT AGTTTCATTT ATACTTTTCA AATAAGTCTA ATCTGTTTTG AGAGCTTGAA 54556 .......... .......... .......... .......... .......... .......... 449 CATGGGCACA ATTCACAGAA GTACTAACTA ACAAGCACAA ATTGTAAATC TTTCTGCTAA 54496 .......... .......... .......... .......... .......... .......... 449 ACAAAAATAA AGAATCAGTA AAAAATCGAG TAATTCTGTA AGGTAGGATA AAAAATGGTA 54436 .......... .......... .......... .......... .......... .......... 449 GAAATATATG ATCCACCACA CATCTTACAA CTACTTTGAC AGTGTTTCTT AGTTTCTCTT 54376 .......... .......... .......... .......... .......... .......... 449 ATTTTGTTTC CTTGTGACAT AAAATATATC TTCTGTAGCA CATATGCTAC AAATCCCAGC 54316 .......... .......... .......... .......... .......... .......... 449 TTGTATTCTA CAGTATAATG AGCAAAAATA ATGGTATACC ATATGCTTTT TCATTCTATA 54256 .......... .......... .......... .......... .......... .......... 449 TCTATTGTAT ATATAACTTG TATTACATAT TCGCTGCAAT TGTTCTATGT TCTGAGTTGC 54196 .......... .......... .......... .......... .......... .......... 449 ATCGTCATAT TTAGACTTTG AGCTTTACAT AGAAAATGGT GTTTAGCTCA TCTCTACTAT 54136 .......... .......... .......... .......... .......... .......... 449 TCTTGTAGTT TCACAGGTAT ATATAAATAT ATCTGGTCTT CTCCTTTTCC ATTTCTTTCA 54076 .......... .......... .......... .......... .......... .......... 449 AGTTTCTTAT GATTACACAC CTTGTCTTAC CCTAAAGCAA TATTATCTAG GATCCTGATT 54016 .......... .......... .......... .......... .......... .......... 449 GTAGAGATCT TCTTTTTTAT TGGTAGCTTT AGAAAATCTT TTTGTTGGGG AAGTAGCAGA 53956 .......... .......... .......... .......... .......... .......... 449 TGAATAATAC TCCCTCCGTT TAAAAAAGGA TGGCCTAATT TGACTTGGAA CGGAGTTTAA 53896 .......... .......... .......... .......... .......... .......... 449 GAAAAGAAAG AAGACTTTTT AATCTTGTGG TTCTAAATTA AAGTTATGTC AAATGTACCA 53836 .......... .......... .......... .......... .......... .......... 449 AAATGTCCTT TAATCTTGTG GTCTTAAACA TGTCATGTGG AAAGTTAAAG TTAAAGTGTT 53776 .......... .......... .......... .......... .......... .......... 449 GCCAAAAAAG GAAATGGGTC ATTCTTTTTG AAACAGACTA AAAAAGAAAT GAGACATTCT 53716 .......... .......... .......... .......... .......... .......... 449 TTTTGTAAAC AGAGGGAGTA ATGGGTAAAG TTACAAACAA TCATAACAGA TGATTTTTCT 53656 .......... .......... .......... .......... .......... .......... 449 ACTTAATGGA TCAGGAGATA TCTATTTTAT TTGAATCTTC GTCTCCTCAC CCAAAAAATA 53596 .......... .......... .......... .......... .......... .......... 449 AGACATGAAA GGAGAAAAGA AATAAATAAG AAGAAAGGGG CCTCTCACTC CCTCCTCCCT 53536 .......... .......... .......... .......... .......... .......... 449 TCATATAGTT TTAGGGAGGG TACTGAGCTA AAGGTTTTTG TGTTCTTAGT GTTATTTCCT 53476 .......... .......... .......... .......... .......... .......... 449 CCTATCTCCT ATTTCGTCCT CCTCCTCCAA AGAAAATCTT CCATCTTTTG TTAATCCCAA 53416 .......... .......... .......... .......... .......... .......... 449 CAGTAATTGA CTGGATTGCA CTCATGTATA ACTTAATTAA GTGCCATGTC ATATTGCTTC 53356 .......... .......... .......... .......... .......... .......... 449 TTTCGACTTG ATTTGCTTTC AGCCATGCAT GTGTAAACTG TCTAAACCTA AAGTAAATAT 53296 .......... .......... .......... .......... .......... .......... 449 TGTACGTGAA ACAGAAGAAT AAGATCTGTT ACAAAACCCT ATGTTTAACA AGAATTATGC 53236 .......... .......... .......... .......... .......... .......... 449 CTTAATCCCA AGCTAGTGGG GATTATATGA ATCATTGCTA CCCATTTCAT TCCCATTTAG 53176 .......... .......... .......... .......... .......... .......... 449 CTCCACTTCC AATCTTCAAT ACATTAGGTT CTCTAAGCCG TGAATTTTGC TAGATTTTCT 53116 .......... .......... .......... .......... .......... .......... 449 ATTGACGTAT ACAATCCCTG ACGAAGACTA AGCCTTAATC TCAACTAGGG TGGTACTGCT 53056 .......... .......... .......... .......... .......... .......... 449 AAGGGATCCT TTTCTTTCGT TGTGCTCTAT TTTTCTCTAA GTTGCATGGA TTCTGTAAGA 52996 .......... .......... .......... .......... .......... .......... 449 TTATTGGTAT TTTGAGATAG CTTCCTATTA TCATTACGTT TTTTCACACC TCGAAGGCTC 52936 .......... .......... .......... .......... .......... .......... 449 GAACCCATTG CATCAGAAGG TCTACTTAGG ACATGACCAA ACCATTCAAG CCAACTCTCA 52876 .......... .......... .......... .......... .......... .......... 449 TTTTTATTAG TATGTGCATC TTTTATTGAA AAGTAAGGCA CTACCCAACT ATAAGAAACG 52816 .......... .......... .......... .......... .......... .......... 449 TTTATAAGTA CTGCTCATCA TTTTACTGAT AAAAATAAAT TACTACTCAA CTAAAAAAGT 52756 .......... .......... .......... .......... .......... .......... 449 TCTATTAAGT ACTATTGAAC TAAAATTGGA GGAATAGAAG GCTTTTTACA AGCAAAATCT 52696 .......... .......... .......... .......... .......... .......... 449 GGATCGAAGT TGTGAAATTG AGGAACTCTC TTAATGAAAC CCTTTTTACC CTTGCAATAT 52636 .......... .......... .......... .......... .......... .......... 449 GTTAAGATAT AGCTTTTTTT TTTTTTTGGT TTTCAAATCC GGATAACGTC CATCTCAGTC 52576 .......... .......... .......... .......... .......... .......... 449 CATGACTAGA ATGTTGTACA GTATAAGCTA ACTTGTCTGT CAATTTCCAT TTATGAGGAG 52516 .......... .......... .......... .......... .......... .......... 449 CTAATGTTTT ATTTTGGCAT TTATTTAAAT CAATTTAGCT AAGAATATTC AGTGATATAT 52456 .......... .......... .......... .......... .......... .......... 449 ACACCTCCTC AAAAAAATTG TGATCTATAC TATTGTTTAC TGATGTTACA ATTGGTAACC 52396 .......... .......... .......... .......... .......... .......... 449 CTTTTTGTTG AAACCTGGCC ACATTTTGAA GATAATCATC ACCTTTTTCA TTTGTAAGAA 52336 .......... .......... .......... .......... .......... .......... 449 GCGAATTGAT AGTTTTAGCA ATTATGTGTT GTGTTCTGAT TACATTGTTT GGAAATATTA 52276 .......... .......... .......... .......... .......... .......... 449 CCTGAAGAAA ATTCATTATG CTTTCTTTTC ATTAATTTGT CTGGATGAGA TAGTTTTGGC 52216 .......... .......... .......... .......... .......... .......... 449 TTCTGGTTAG TGAAACGTTG TCATGTGCTC TGTTTTTCTT AACAAGCTTG TAATACAACC 52156 .......... .......... .......... .......... .......... .......... 449 TCACTACTTT TATGTACAAA TATAGTCAAA TAGTTATATG CCGATTCTTG GGTGGAACAT 52096 .......... .......... .......... .......... .......... .......... 449 GTTTTCTGCA CCTACTTGAT CCCAGCCAGC AGTTATCCTT TCAAGGACAC CCAAATGAAT 52036 .......... .......... .......... .......... .......... .......... 449 AGTTGGGATT GAATGGACCT AAGAATCACT TTTCTCCTGT GAGCTGGAAA TTTCATAGGT 51976 .......... .......... .......... .......... .......... .......... 449 CTTAAGTTTG ATCTGAATTT GAGTTCCCTG TTGTGGTGCA GATAAAAAGA GATGGGATTA 51916 ||||||||| |||||||||| .......... .......... .......... .......... .ATAAAAAGA GATGGGATTA 468 CAAAGCTTGT TGTACTGCCT TTATATCCTC AATACTCTAT CTCTACAACT GGTTCTAGTG 51856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCTTGT TGTACTGCCT TTATATCCTC AATACTCTAT CTCTACAACT GGTTCTAGTG 528 TCCGTGCCCT TCAGAATATT TTCAAGTAAC TCTCTTTTTC TTTTCAATTT GGTTACTGCA 51796 |||||||||| |||||||||| ||||| TCCGTGCCCT TCAGAATATT TTCAA..... .......... .......... .......... 553 TTTATGGAGT CTCATGTTCT TAAATTGAAG TGTATGCACA TACATTTTCC TGTCTCTGAT 51736 .......... .......... .......... .......... .......... .......... 553 CAATATCTGA ACTTTTTGTG CACTCCCAGA GGAGACTCTT ATCTGTCCAG ACTGCCAGTT 51676 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GGAGACTCTT ATCTGTCCAG ACTGCCAGTT 584 GCAGTCATTG AATCCTGGTA CCAACGACAA GGTTACATCA AGTCCATGGC AAACTTGATT 51616 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GCAGTCATTG AATCCTGGTA -CAACGACAA GGTTACATCA AGTCCATGGC AAACTTGATT 643 GAGCAGGAGT TACATAATTT CACTAAGCCT 51586 |||||||||| |||||||||| |||||||||| GAGCAGGAGT TACATAATTT CACTAAGCCT 673 hqPGS_C08SLm0119I05.1-_SGN-E211321+ (55395 55193,55085 54942,54831 54730,51934 51831,51706 51586) ******************************************************************************** EST sequence 85 +strand 592 n (File: SGN-E254151+) 1 TTACATCGCC CAGTGCACAA GAGAGATGTA GTTGGCAAGA CGTTCTGCTC TGTTGGATTG 61 TCTACATTTC CGGGGAGCAT CGTTGAGTCT TCTTCCCAGA CAACTGAAGA AAAGATCGGA 121 GTGCTACTTT TGAATCTTGG AGGGCCAGAC ACACTTCATG ATGTCCAGCC TTTTCTGTTC 181 AACTTATTTG CTGATCCTGA CATTATACGT CTACCCAGAT TGTTCAGATT TCTCCAGCGC 241 CCATTGGCAC AACTTATATC TGTTCTCCGA GCTCCGAAAA GCAAGGAAGG ATATGCTGCA 301 ATTGGAGGTG GTTCTCCTTT ACGAAAAATA ACAGATGAGC AGGCTAGTGT ACTAAAAATT 361 GCACTAGAAA CAAAGGAAGT ACCAGCTAAT GTCTATGTTG CGATGAGGTA TTGGCACCCG 421 TTCACCGAGG AAGCTGTTCA CCAGATAAAA AGAGATGGGA TTACAAAGCT TGTTGTACTG 481 CCTTTATATC CTCAATACTC TATCTCTACA ACTGGTTCTA GTGTCCGTGC CCTTCAGAAT 541 ATTTTCAAAG GAGACTCTTA TCTGTCCAGA CTGCCAGTTG CAGTCATTGA AT Predicted gene structure (within gDNA segment 55990 to 51053): Exon 1 55390 55193 ( 198 n); cDNA 1 198 ( 198 n); score: 1.000 Intron 1 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 55085 54942 ( 144 n); cDNA 199 342 ( 144 n); score: 1.000 Intron 2 54941 54832 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 54831 54730 ( 102 n); cDNA 343 444 ( 102 n); score: 1.000 Intron 3 54729 51935 (2795 n); Pd: 0.993 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51934 51831 ( 104 n); cDNA 445 548 ( 104 n); score: 1.000 Intron 4 51830 51707 ( 124 n); Pd: 0.990 (s: 1.00), Pa: 0.885 (s: 1.00) Exon 5 51706 51663 ( 44 n); cDNA 549 592 ( 44 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E254151+ 1.000 592 1.000 C PGS_C08SLm0119I05.1-_SGN-E254151+ (55390 55193,55085 54942,54831 54730,51934 51831,51706 51663) Alignment (genomic DNA sequence = upper lines): TTACATCGCC CAGTGCACAA GAGAGATGTA GTTGGCAAGA CGTTCTGCTC TGTTGGATTG 55331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACATCGCC CAGTGCACAA GAGAGATGTA GTTGGCAAGA CGTTCTGCTC TGTTGGATTG 60 TCTACATTTC CGGGGAGCAT CGTTGAGTCT TCTTCCCAGA CAACTGAAGA AAAGATCGGA 55271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACATTTC CGGGGAGCAT CGTTGAGTCT TCTTCCCAGA CAACTGAAGA AAAGATCGGA 120 GTGCTACTTT TGAATCTTGG AGGGCCAGAC ACACTTCATG ATGTCCAGCC TTTTCTGTTC 55211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTACTTT TGAATCTTGG AGGGCCAGAC ACACTTCATG ATGTCCAGCC TTTTCTGTTC 180 AACTTATTTG CTGATCCTGT ATGCTAACAA TCAGTCTTAA CTCATTTTTT TTCCTAAGCT 55151 |||||||||| |||||||| AACTTATTTG CTGATCCT.. .......... .......... .......... .......... 198 GGAGATTTTG GGCAATTTCG TTCTTTGTTT GTGTTTATGC TAATGGTATG AATTTCACAT 55091 .......... .......... .......... .......... .......... .......... 198 GGCAGGACAT TATACGTCTA CCCAGATTGT TCAGATTTCT CCAGCGCCCA TTGGCACAAC 55031 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GACAT TATACGTCTA CCCAGATTGT TCAGATTTCT CCAGCGCCCA TTGGCACAAC 253 TTATATCTGT TCTCCGAGCT CCGAAAAGCA AGGAAGGATA TGCTGCAATT GGAGGTGGTT 54971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATCTGT TCTCCGAGCT CCGAAAAGCA AGGAAGGATA TGCTGCAATT GGAGGTGGTT 313 CTCCTTTACG AAAAATAACA GATGAGCAGG TATAGGAAAA CCCCTTTTTA TTTATGTGCT 54911 |||||||||| |||||||||| ||||||||| CTCCTTTACG AAAAATAACA GATGAGCAG. .......... .......... .......... 342 CTGTGCTAAA AAATTCTTTC TACTTCATTA TGCTGGTGTC ATTTTCAACT TGTTAACCCT 54851 .......... .......... .......... .......... .......... .......... 342 CTTAAGCTCA TCATTGCAGG CTAGTGTACT AAAAATTGCA CTAGAAACAA AGGAAGTACC 54791 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CTAGTGTACT AAAAATTGCA CTAGAAACAA AGGAAGTACC 383 AGCTAATGTC TATGTTGCGA TGAGGTATTG GCACCCGTTC ACCGAGGAAG CTGTTCACCA 54731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAATGTC TATGTTGCGA TGAGGTATTG GCACCCGTTC ACCGAGGAAG CTGTTCACCA 443 GGTAGGCTCA AAATGCATCC TCTTGGTTCT TCCAGTTGAC ATTTTTTTGT CTTGATCTTT 54671 | G......... .......... .......... .......... .......... .......... 444 TGTTTGATCT TGTCTGTGTC TTCTCTCATG TGCTCACGAT AATCTCAACA AGTCATTAGA 54611 .......... .......... .......... .......... .......... .......... 444 ACACTAGTTT CATTTATACT TTTCAAATAA GTCTAATCTG TTTTGAGAGC TTGAACATGG 54551 .......... .......... .......... .......... .......... .......... 444 GCACAATTCA CAGAAGTACT AACTAACAAG CACAAATTGT AAATCTTTCT GCTAAACAAA 54491 .......... .......... .......... .......... .......... .......... 444 AATAAAGAAT CAGTAAAAAA TCGAGTAATT CTGTAAGGTA GGATAAAAAA TGGTAGAAAT 54431 .......... .......... .......... .......... .......... .......... 444 ATATGATCCA CCACACATCT TACAACTACT TTGACAGTGT TTCTTAGTTT CTCTTATTTT 54371 .......... .......... .......... .......... .......... .......... 444 GTTTCCTTGT GACATAAAAT ATATCTTCTG TAGCACATAT GCTACAAATC CCAGCTTGTA 54311 .......... .......... .......... .......... .......... .......... 444 TTCTACAGTA TAATGAGCAA AAATAATGGT ATACCATATG CTTTTTCATT CTATATCTAT 54251 .......... .......... .......... .......... .......... .......... 444 TGTATATATA ACTTGTATTA CATATTCGCT GCAATTGTTC TATGTTCTGA GTTGCATCGT 54191 .......... .......... .......... .......... .......... .......... 444 CATATTTAGA CTTTGAGCTT TACATAGAAA ATGGTGTTTA GCTCATCTCT ACTATTCTTG 54131 .......... .......... .......... .......... .......... .......... 444 TAGTTTCACA GGTATATATA AATATATCTG GTCTTCTCCT TTTCCATTTC TTTCAAGTTT 54071 .......... .......... .......... .......... .......... .......... 444 CTTATGATTA CACACCTTGT CTTACCCTAA AGCAATATTA TCTAGGATCC TGATTGTAGA 54011 .......... .......... .......... .......... .......... .......... 444 GATCTTCTTT TTTATTGGTA GCTTTAGAAA ATCTTTTTGT TGGGGAAGTA GCAGATGAAT 53951 .......... .......... .......... .......... .......... .......... 444 AATACTCCCT CCGTTTAAAA AAGGATGGCC TAATTTGACT TGGAACGGAG TTTAAGAAAA 53891 .......... .......... .......... .......... .......... .......... 444 GAAAGAAGAC TTTTTAATCT TGTGGTTCTA AATTAAAGTT ATGTCAAATG TACCAAAATG 53831 .......... .......... .......... .......... .......... .......... 444 TCCTTTAATC TTGTGGTCTT AAACATGTCA TGTGGAAAGT TAAAGTTAAA GTGTTGCCAA 53771 .......... .......... .......... .......... .......... .......... 444 AAAAGGAAAT GGGTCATTCT TTTTGAAACA GACTAAAAAA GAAATGAGAC ATTCTTTTTG 53711 .......... .......... .......... .......... .......... .......... 444 TAAACAGAGG GAGTAATGGG TAAAGTTACA AACAATCATA ACAGATGATT TTTCTACTTA 53651 .......... .......... .......... .......... .......... .......... 444 ATGGATCAGG AGATATCTAT TTTATTTGAA TCTTCGTCTC CTCACCCAAA AAATAAGACA 53591 .......... .......... .......... .......... .......... .......... 444 TGAAAGGAGA AAAGAAATAA ATAAGAAGAA AGGGGCCTCT CACTCCCTCC TCCCTTCATA 53531 .......... .......... .......... .......... .......... .......... 444 TAGTTTTAGG GAGGGTACTG AGCTAAAGGT TTTTGTGTTC TTAGTGTTAT TTCCTCCTAT 53471 .......... .......... .......... .......... .......... .......... 444 CTCCTATTTC GTCCTCCTCC TCCAAAGAAA ATCTTCCATC TTTTGTTAAT CCCAACAGTA 53411 .......... .......... .......... .......... .......... .......... 444 ATTGACTGGA TTGCACTCAT GTATAACTTA ATTAAGTGCC ATGTCATATT GCTTCTTTCG 53351 .......... .......... .......... .......... .......... .......... 444 ACTTGATTTG CTTTCAGCCA TGCATGTGTA AACTGTCTAA ACCTAAAGTA AATATTGTAC 53291 .......... .......... .......... .......... .......... .......... 444 GTGAAACAGA AGAATAAGAT CTGTTACAAA ACCCTATGTT TAACAAGAAT TATGCCTTAA 53231 .......... .......... .......... .......... .......... .......... 444 TCCCAAGCTA GTGGGGATTA TATGAATCAT TGCTACCCAT TTCATTCCCA TTTAGCTCCA 53171 .......... .......... .......... .......... .......... .......... 444 CTTCCAATCT TCAATACATT AGGTTCTCTA AGCCGTGAAT TTTGCTAGAT TTTCTATTGA 53111 .......... .......... .......... .......... .......... .......... 444 CGTATACAAT CCCTGACGAA GACTAAGCCT TAATCTCAAC TAGGGTGGTA CTGCTAAGGG 53051 .......... .......... .......... .......... .......... .......... 444 ATCCTTTTCT TTCGTTGTGC TCTATTTTTC TCTAAGTTGC ATGGATTCTG TAAGATTATT 52991 .......... .......... .......... .......... .......... .......... 444 GGTATTTTGA GATAGCTTCC TATTATCATT ACGTTTTTTC ACACCTCGAA GGCTCGAACC 52931 .......... .......... .......... .......... .......... .......... 444 CATTGCATCA GAAGGTCTAC TTAGGACATG ACCAAACCAT TCAAGCCAAC TCTCATTTTT 52871 .......... .......... .......... .......... .......... .......... 444 ATTAGTATGT GCATCTTTTA TTGAAAAGTA AGGCACTACC CAACTATAAG AAACGTTTAT 52811 .......... .......... .......... .......... .......... .......... 444 AAGTACTGCT CATCATTTTA CTGATAAAAA TAAATTACTA CTCAACTAAA AAAGTTCTAT 52751 .......... .......... .......... .......... .......... .......... 444 TAAGTACTAT TGAACTAAAA TTGGAGGAAT AGAAGGCTTT TTACAAGCAA AATCTGGATC 52691 .......... .......... .......... .......... .......... .......... 444 GAAGTTGTGA AATTGAGGAA CTCTCTTAAT GAAACCCTTT TTACCCTTGC AATATGTTAA 52631 .......... .......... .......... .......... .......... .......... 444 GATATAGCTT TTTTTTTTTT TTGGTTTTCA AATCCGGATA ACGTCCATCT CAGTCCATGA 52571 .......... .......... .......... .......... .......... .......... 444 CTAGAATGTT GTACAGTATA AGCTAACTTG TCTGTCAATT TCCATTTATG AGGAGCTAAT 52511 .......... .......... .......... .......... .......... .......... 444 GTTTTATTTT GGCATTTATT TAAATCAATT TAGCTAAGAA TATTCAGTGA TATATACACC 52451 .......... .......... .......... .......... .......... .......... 444 TCCTCAAAAA AATTGTGATC TATACTATTG TTTACTGATG TTACAATTGG TAACCCTTTT 52391 .......... .......... .......... .......... .......... .......... 444 TGTTGAAACC TGGCCACATT TTGAAGATAA TCATCACCTT TTTCATTTGT AAGAAGCGAA 52331 .......... .......... .......... .......... .......... .......... 444 TTGATAGTTT TAGCAATTAT GTGTTGTGTT CTGATTACAT TGTTTGGAAA TATTACCTGA 52271 .......... .......... .......... .......... .......... .......... 444 AGAAAATTCA TTATGCTTTC TTTTCATTAA TTTGTCTGGA TGAGATAGTT TTGGCTTCTG 52211 .......... .......... .......... .......... .......... .......... 444 GTTAGTGAAA CGTTGTCATG TGCTCTGTTT TTCTTAACAA GCTTGTAATA CAACCTCACT 52151 .......... .......... .......... .......... .......... .......... 444 ACTTTTATGT ACAAATATAG TCAAATAGTT ATATGCCGAT TCTTGGGTGG AACATGTTTT 52091 .......... .......... .......... .......... .......... .......... 444 CTGCACCTAC TTGATCCCAG CCAGCAGTTA TCCTTTCAAG GACACCCAAA TGAATAGTTG 52031 .......... .......... .......... .......... .......... .......... 444 GGATTGAATG GACCTAAGAA TCACTTTTCT CCTGTGAGCT GGAAATTTCA TAGGTCTTAA 51971 .......... .......... .......... .......... .......... .......... 444 GTTTGATCTG AATTTGAGTT CCCTGTTGTG GTGCAGATAA AAAGAGATGG GATTACAAAG 51911 |||| |||||||||| |||||||||| .......... .......... .......... ......ATAA AAAGAGATGG GATTACAAAG 468 CTTGTTGTAC TGCCTTTATA TCCTCAATAC TCTATCTCTA CAACTGGTTC TAGTGTCCGT 51851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTGTAC TGCCTTTATA TCCTCAATAC TCTATCTCTA CAACTGGTTC TAGTGTCCGT 528 GCCCTTCAGA ATATTTTCAA GTAACTCTCT TTTTCTTTTC AATTTGGTTA CTGCATTTAT 51791 |||||||||| |||||||||| GCCCTTCAGA ATATTTTCAA .......... .......... .......... .......... 548 GGAGTCTCAT GTTCTTAAAT TGAAGTGTAT GCACATACAT TTTCCTGTCT CTGATCAATA 51731 .......... .......... .......... .......... .......... .......... 548 TCTGAACTTT TTGTGCACTC CCAGAGGAGA CTCTTATCTG TCCAGACTGC CAGTTGCAGT 51671 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....AGGAGA CTCTTATCTG TCCAGACTGC CAGTTGCAGT 584 CATTGAAT 51663 |||||||| CATTGAAT 592 hqPGS_C08SLm0119I05.1-_SGN-E254151+ (55390 55193,55085 54942,54831 54730,51934 51831,51706 51663) ******************************************************************************** EST sequence 75 +strand 794 n (File: SGN-E212819+) 1 ACAAGTCAAA TCTTAAGGAA GATATGTGTT ACTTGTAGAA ATTCAAGTAG AAATCTCACG 61 TAGAAAAATA AAAGATTGTA TTGATGTATT AATGAAAATA ATATTGAGTT ACAAGCTCCT 121 TATATAGGAG AGAATTATAG AGTCCTAAGT TAACTACTTT GAGTCATACT ACAATATCTA 181 TTACTACTAT AATAATAATA ATTCAATTAT AAATATTATA ATCCTGCTTG TATTATAATC 241 CTAATCCTAG TCGAAATATA ATACTCCCTC CATTTCAAAA AGGATGACCT AGTTTGATTT 301 GGAACGGAGT TTAAGAGAAA AAGAAAGACT TTTTAATCTT GTGGTTGTAA ATTAAAGTTA 361 TGTCAATTCT ACTAAAATGT CCTTTAATCT TGTGGTCTTA AACATGTCAC GTGGAAAGTT 421 AAGTTAAAGT ATTACCATAA AGGGAAAGAG GTCATTCTTT TTTAAACAGA CTAAAAAGGA 481 AATAGGGTCA TTCTTTTAGA AACGGAGGGA GTACTAATTA ATATGAGTAG TCTAATCCTA 541 GTACGACTCT AATTCTAGAG CAGTGTTATA AACTCGTCAA TCAGCTTCAT TGGACATACA 601 TGTTCTTTCG ACATGTTCCA ATCCTCAGCT TCCTTATTCA TCAACACTTA TTATAGACAA 661 GTCAGTCAGT TGCATCGGAC ATGTTCCTTC TTCTTNCACA CTACTCACTA ACATAGTAAC 721 ATGATAACAT GATAAATAAG TTTATAAACA TTGATAATTA GAGATATCTT GCATTATCAG 781 TAAATTTTAA TTTT Predicted gene structure (within gDNA segment 59891 to 49341): Exon 1 57650 57631 ( 20 n); cDNA 144 162 ( 19 n); score: 0.800 Intron 1 57630 56871 ( 760 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70) Exon 2 56870 56825 ( 46 n); cDNA 163 207 ( 45 n); score: 0.696 Intron 2 56824 54338 (2487 n); Pd: 0.000 (s: 0.70), Pa: 0.138 (s: 0.63) Exon 3 54337 54295 ( 43 n); cDNA 208 247 ( 40 n); score: 0.628 Intron 3 54294 53963 ( 332 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.82) Exon 4 53962 53692 ( 271 n); cDNA 248 517 ( 270 n); score: 0.858 Intron 4 53691 51935 (1757 n); Pd: 0.617 (s: 0.77), Pa: 0.991 (s: 0) Exon 5 51934 51925 ( 10 n); cDNA 518 527 ( 10 n); score: 0.700 MATCH C08SLm0119I05.1- SGN-E212819+ 0.858 390 0.491 C PGS_C08SLm0119I05.1-_SGN-E212819+ (57650 57631,56870 56825,54337 54295,53962 53692,51934 51925) Alignment (genomic DNA sequence = upper lines): CCTACGTGAC ACTAGTTTGA AAGAAAAAGT CAACCAATAT TGGGCCCACA AGATAGTGCC 57591 |||| || | |||| ||||| CCTAAGTTA- ACTACTTTGA .......... .......... .......... .......... 162 ACGTAAGGCA AAAAGTGGTA GAATATTATT AATAAAATAA GTTCAGGGGG TAATAGCACC 57531 .......... .......... .......... .......... .......... .......... 162 TTTGTATAGT ATAAGTGTGT CTCTGAGATT TTGTGCATAG GTTGAGGGGT ACTTATGCAT 57471 .......... .......... .......... .......... .......... .......... 162 TATCCTTATA TTAATTGAGA CTATAAAATT GACAAACAAA AGTAATGCAT TTTAACTTCA 57411 .......... .......... .......... .......... .......... .......... 162 ATTTTTACAC AAATATCCAT AGCTAATGCC AAATTTTATG CCAAGAGTGT TATGTAAAGA 57351 .......... .......... .......... .......... .......... .......... 162 TACTCCTTCC GTCCTGTATT AGTTGATCGT ATTAATCATT CATTTTATTA AATTAAAGAA 57291 .......... .......... .......... .......... .......... .......... 162 ATATTAATTA AAAAATTTCA TATTGTATTT ACAATTATTC TTTTAAAAAA TATTATCCTT 57231 .......... .......... .......... .......... .......... .......... 162 TTATTCAGTA AAAATGCACA AGTATCCCCT AGAGAAGAAT TGAAATTCTA GAGACACATT 57171 .......... .......... .......... .......... .......... .......... 162 AACTAAACTG AAGTTCTATT ACTCCTGAAC TTATTATTTT GTAATTTTGT GCACATTTTT 57111 .......... .......... .......... .......... .......... .......... 162 ACTTACGTGG CATTCAAATA TCTCCCACAT ATCTCAATTG CGTGAAATCG CAGAGTGTGC 57051 .......... .......... .......... .......... .......... .......... 162 CACGTGAAAC AAAAGATGCA GAAAATTAGA GACAAGGTTT AAAATAATCC CTCATCTTTG 56991 .......... .......... .......... .......... .......... .......... 162 GGTTAAGGCT TGAAGTCATC CTTCAATTTG TAAATGGAGC ATTAACGGTC TCTCGTGCTT 56931 .......... .......... .......... .......... .......... .......... 162 GCAATATTGG TGCACTTTTG GTCTTCATTC AAAAGTGTTT TTCTTCTCAC AATCTCTCAC 56871 .......... .......... .......... .......... .......... .......... 162 GTGAAGTTAT TATATCTATT AAAAATATAT ATAATGATGA TTAAAAATTT CATACATAAA 56811 || | || ||||||||| | | |||| ||||| || | || || GTCATACTAC AATATCTATT ACTACTATA- ATAATAATAA TTCAAT.... .......... 207 TTATGAATAA AATCAATGTT AAAAAATAGA TAGTTTTGAA TAAGGACAAA AAATGTACAA 56751 .......... .......... .......... .......... .......... .......... 207 ATATTGCAAA GACGAAGGAT TATTAAAGCT TCATGTGAAA ACTCTAGATG ACTTTGACTC 56691 .......... .......... .......... .......... .......... .......... 207 TTAACCCAAA GATATACTAT TTTAGATCTT TTTGATCATA ATCTAAAAAG ATACTTATGC 56631 .......... .......... .......... .......... .......... .......... 207 ATTTTTTCTT TTATTCATGA TATCTTAATA TGTTGATCAA TTTATATTAT ATATATATAT 56571 .......... .......... .......... .......... .......... .......... 207 ATATATATAT ATATATATAA AATATAAAAG GCAGAGAATA GTTTTAATAG CACCTTCAAA 56511 .......... .......... .......... .......... .......... .......... 207 AGAGAAAAGA AGTCGCAATT GACGGTTTTG TTTGAAGAAA AATGGTGTTA GGTGAGTTGC 56451 .......... .......... .......... .......... .......... .......... 207 TACATCAATA GCTATGAACA CGTCTTCGTT ATTCCTCTCC TCTTTTTTTT ATTTATACAT 56391 .......... .......... .......... .......... .......... .......... 207 TTCTCTCCAT CCAATTAGCT TCCATAAACC CTATATTTCT TTGACTCTTC TCAATATTTT 56331 .......... .......... .......... .......... .......... .......... 207 ACTTTTTTAG CCAACCCCTT TAATTTTCTC ACAAAAATTT CCACAAACTA TACTTTTTTC 56271 .......... .......... .......... .......... .......... .......... 207 TGCATTTAAT AGTATTATTT TTCTTTCAAA CCCATAAAAA ACTAGAATAA GATCTCTTTT 56211 .......... .......... .......... .......... .......... .......... 207 TGGAAAGTTT TGATAGAAGA AAATCATCAC ATAGTAGATC ATGGAAACAG GGACGATCTC 56151 .......... .......... .......... .......... .......... .......... 207 TCGACTTCTT AAACCGACTA AGGTTCCAAG TTCTAGTTTT TCCAGTTTCA CTTCTAACTC 56091 .......... .......... .......... .......... .......... .......... 207 TTCCATGTAA GCTTTTATGG GTTTTCATTT TCTTGGAAAT TCCTTTCTTT TTTTCATATG 56031 .......... .......... .......... .......... .......... .......... 207 GGTTGCTCTT AAATTTTGTT ATTGTCAATT ATATGTTTTT ATAAGAATTC AGTTCCTTTT 55971 .......... .......... .......... .......... .......... .......... 207 TTCTTTGTTG TAACGTTTGA TTTGATCAAT TATATGAATA ACTGTTTGAA AAAGTCAGAA 55911 .......... .......... .......... .......... .......... .......... 207 TCTTGATGAA AGGTTTAGGA TGTTTTGGGT TTGGCTGGTG AATGAGGTCA TTTGTTATGC 55851 .......... .......... .......... .......... .......... .......... 207 AGAAGTTGTT GGTTCTTTTA TAATCAAATA CCAACTTATG ATATGGGGAA AATGCTTTGC 55791 .......... .......... .......... .......... .......... .......... 207 GTACATTATT TAGAAAGTTA CTCTATAACT TTGTAATGAC AATCTAATAA TGGGAGTGTA 55731 .......... .......... .......... .......... .......... .......... 207 TCAAGTATGA TGACTCGATA GATCTTGTGG AGAAAAGAAA CTTTTTAGTG AGGAGATGCA 55671 .......... .......... .......... .......... .......... .......... 207 CATAGATTTT TCATTTCCAT GCTGATTTCA ATGCCAAAAT GATGCACTAA ACTTTTTAAT 55611 .......... .......... .......... .......... .......... .......... 207 GAGGAGATAG ACATAGATTT TTCATTTCCA TGCTAATTTC AATGCCGGAA TGATGTACTG 55551 .......... .......... .......... .......... .......... .......... 207 AATGAATCTT TATCCTGGCA GATGCTGCTC GCGGACAAGG TTAATGCCTC CTTTCCATTC 55491 .......... .......... .......... .......... .......... .......... 207 CTCACATGGT GGGCGAGAAA TGAATTCTGA TGAGCGGGAG ATTACAATTT TATCTTCTGA 55431 .......... .......... .......... .......... .......... .......... 207 ACTCACTCTC AAAAAAAGCA GTGTAGTTGA GGGATTGTCT TTACATCGCC CAGTGCACAA 55371 .......... .......... .......... .......... .......... .......... 207 GAGAGATGTA GTTGGCAAGA CGTTCTGCTC TGTTGGATTG TCTACATTTC CGGGGAGCAT 55311 .......... .......... .......... .......... .......... .......... 207 CGTTGAGTCT TCTTCCCAGA CAACTGAAGA AAAGATCGGA GTGCTACTTT TGAATCTTGG 55251 .......... .......... .......... .......... .......... .......... 207 AGGGCCAGAC ACACTTCATG ATGTCCAGCC TTTTCTGTTC AACTTATTTG CTGATCCTGT 55191 .......... .......... .......... .......... .......... .......... 207 ATGCTAACAA TCAGTCTTAA CTCATTTTTT TTCCTAAGCT GGAGATTTTG GGCAATTTCG 55131 .......... .......... .......... .......... .......... .......... 207 TTCTTTGTTT GTGTTTATGC TAATGGTATG AATTTCACAT GGCAGGACAT TATACGTCTA 55071 .......... .......... .......... .......... .......... .......... 207 CCCAGATTGT TCAGATTTCT CCAGCGCCCA TTGGCACAAC TTATATCTGT TCTCCGAGCT 55011 .......... .......... .......... .......... .......... .......... 207 CCGAAAAGCA AGGAAGGATA TGCTGCAATT GGAGGTGGTT CTCCTTTACG AAAAATAACA 54951 .......... .......... .......... .......... .......... .......... 207 GATGAGCAGG TATAGGAAAA CCCCTTTTTA TTTATGTGCT CTGTGCTAAA AAATTCTTTC 54891 .......... .......... .......... .......... .......... .......... 207 TACTTCATTA TGCTGGTGTC ATTTTCAACT TGTTAACCCT CTTAAGCTCA TCATTGCAGG 54831 .......... .......... .......... .......... .......... .......... 207 CTAGTGTACT AAAAATTGCA CTAGAAACAA AGGAAGTACC AGCTAATGTC TATGTTGCGA 54771 .......... .......... .......... .......... .......... .......... 207 TGAGGTATTG GCACCCGTTC ACCGAGGAAG CTGTTCACCA GGTAGGCTCA AAATGCATCC 54711 .......... .......... .......... .......... .......... .......... 207 TCTTGGTTCT TCCAGTTGAC ATTTTTTTGT CTTGATCTTT TGTTTGATCT TGTCTGTGTC 54651 .......... .......... .......... .......... .......... .......... 207 TTCTCTCATG TGCTCACGAT AATCTCAACA AGTCATTAGA ACACTAGTTT CATTTATACT 54591 .......... .......... .......... .......... .......... .......... 207 TTTCAAATAA GTCTAATCTG TTTTGAGAGC TTGAACATGG GCACAATTCA CAGAAGTACT 54531 .......... .......... .......... .......... .......... .......... 207 AACTAACAAG CACAAATTGT AAATCTTTCT GCTAAACAAA AATAAAGAAT CAGTAAAAAA 54471 .......... .......... .......... .......... .......... .......... 207 TCGAGTAATT CTGTAAGGTA GGATAAAAAA TGGTAGAAAT ATATGATCCA CCACACATCT 54411 .......... .......... .......... .......... .......... .......... 207 TACAACTACT TTGACAGTGT TTCTTAGTTT CTCTTATTTT GTTTCCTTGT GACATAAAAT 54351 .......... .......... .......... .......... .......... .......... 207 ATATCTTCTG TAGCACATAT GCTACAAATC CCAGCTTGTA TTCTACAGTA TAATGAGCAA 54291 | | || || ||| || ||||||| || || | |||| .......... ...TATAAAT ATTA-TAAT- CCTGCTTGTA TTATA-ATCC TAATCC.... 247 AAATAATGGT ATACCATATG CTTTTTCATT CTATATCTAT TGTATATATA ACTTGTATTA 54231 .......... .......... .......... .......... .......... .......... 247 CATATTCGCT GCAATTGTTC TATGTTCTGA GTTGCATCGT CATATTTAGA CTTTGAGCTT 54171 .......... .......... .......... .......... .......... .......... 247 TACATAGAAA ATGGTGTTTA GCTCATCTCT ACTATTCTTG TAGTTTCACA GGTATATATA 54111 .......... .......... .......... .......... .......... .......... 247 AATATATCTG GTCTTCTCCT TTTCCATTTC TTTCAAGTTT CTTATGATTA CACACCTTGT 54051 .......... .......... .......... .......... .......... .......... 247 CTTACCCTAA AGCAATATTA TCTAGGATCC TGATTGTAGA GATCTTCTTT TTTATTGGTA 53991 .......... .......... .......... .......... .......... .......... 247 GCTTTAGAAA ATCTTTTTGT TGGGGAAGTA GCAGATGAAT AATACTCCCT CCGTTTAAAA 53931 || | || || |||||||||| || ||| ||| .......... .......... ........TA GTCGAAATAT AATACTCCCT CCATTTCAAA 279 AAGGATGGCC TAATTTGACT TGGAACGGAG TTTAAGAAAA GAAAGAAGAC TTTTTAATCT 53871 ||||||| || || ||||| | |||||||||| ||||||| || || ||||| |||||||||| AAGGATGACC TAGTTTGATT TGGAACGGAG TTTAAGAGAA AAAGAAAGAC TTTTTAATCT 339 TGTGGTTCTA AATTAAAGTT ATGTCAAATG TACCAAAATG TCCTTTAATC TTGTGGTCTT 53811 ||||||| || |||||||||| ||||||| | ||| |||||| |||||||||| |||||||||| TGTGGTTGTA AATTAAAGTT ATGTCAATTC TACTAAAATG TCCTTTAATC TTGTGGTCTT 399 AAACATGTCA TGTGGAAAGT TAAAGTTAAA GTGTTGCCAA AAAAGGAAAT GGGTCATTCT 53751 |||||||||| ||||||||| | |||||||| || || ||| ||| ||||| ||||||||| AAACATGTCA CGTGGAAAGT T-AAGTTAAA GTATTACCAT AAAGGGAAAG AGGTCATTCT 458 TTTTGAAACA GACTAAAAAA GAAAT-GAGA CATTCTTTTT GTAAACAGAG GGAGTAATGG 53692 |||| ||||| ||||||||| ||||| | | ||||||||| | |||| ||| |||||| | TTTTTAAACA GACTAAAAAG GAAATAGGGT CATTCTTTTA G-AAACGGAG GGAGTACTAA 517 GTAAAGTTAC AAACAATCAT AACAGATGAT TTTTCTACTT AATGGATCAG GAGATATCTA 53632 .......... .......... .......... .......... .......... .......... 517 TTTTATTTGA ATCTTCGTCT CCTCACCCAA AAAATAAGAC ATGAAAGGAG AAAAGAAATA 53572 .......... .......... .......... .......... .......... .......... 517 AATAAGAAGA AAGGGGCCTC TCACTCCCTC CTCCCTTCAT ATAGTTTTAG GGAGGGTACT 53512 .......... .......... .......... .......... .......... .......... 517 GAGCTAAAGG TTTTTGTGTT CTTAGTGTTA TTTCCTCCTA TCTCCTATTT CGTCCTCCTC 53452 .......... .......... .......... .......... .......... .......... 517 CTCCAAAGAA AATCTTCCAT CTTTTGTTAA TCCCAACAGT AATTGACTGG ATTGCACTCA 53392 .......... .......... .......... .......... .......... .......... 517 TGTATAACTT AATTAAGTGC CATGTCATAT TGCTTCTTTC GACTTGATTT GCTTTCAGCC 53332 .......... .......... .......... .......... .......... .......... 517 ATGCATGTGT AAACTGTCTA AACCTAAAGT AAATATTGTA CGTGAAACAG AAGAATAAGA 53272 .......... .......... .......... .......... .......... .......... 517 TCTGTTACAA AACCCTATGT TTAACAAGAA TTATGCCTTA ATCCCAAGCT AGTGGGGATT 53212 .......... .......... .......... .......... .......... .......... 517 ATATGAATCA TTGCTACCCA TTTCATTCCC ATTTAGCTCC ACTTCCAATC TTCAATACAT 53152 .......... .......... .......... .......... .......... .......... 517 TAGGTTCTCT AAGCCGTGAA TTTTGCTAGA TTTTCTATTG ACGTATACAA TCCCTGACGA 53092 .......... .......... .......... .......... .......... .......... 517 AGACTAAGCC TTAATCTCAA CTAGGGTGGT ACTGCTAAGG GATCCTTTTC TTTCGTTGTG 53032 .......... .......... .......... .......... .......... .......... 517 CTCTATTTTT CTCTAAGTTG CATGGATTCT GTAAGATTAT TGGTATTTTG AGATAGCTTC 52972 .......... .......... .......... .......... .......... .......... 517 CTATTATCAT TACGTTTTTT CACACCTCGA AGGCTCGAAC CCATTGCATC AGAAGGTCTA 52912 .......... .......... .......... .......... .......... .......... 517 CTTAGGACAT GACCAAACCA TTCAAGCCAA CTCTCATTTT TATTAGTATG TGCATCTTTT 52852 .......... .......... .......... .......... .......... .......... 517 ATTGAAAAGT AAGGCACTAC CCAACTATAA GAAACGTTTA TAAGTACTGC TCATCATTTT 52792 .......... .......... .......... .......... .......... .......... 517 ACTGATAAAA ATAAATTACT ACTCAACTAA AAAAGTTCTA TTAAGTACTA TTGAACTAAA 52732 .......... .......... .......... .......... .......... .......... 517 ATTGGAGGAA TAGAAGGCTT TTTACAAGCA AAATCTGGAT CGAAGTTGTG AAATTGAGGA 52672 .......... .......... .......... .......... .......... .......... 517 ACTCTCTTAA TGAAACCCTT TTTACCCTTG CAATATGTTA AGATATAGCT TTTTTTTTTT 52612 .......... .......... .......... .......... .......... .......... 517 TTTGGTTTTC AAATCCGGAT AACGTCCATC TCAGTCCATG ACTAGAATGT TGTACAGTAT 52552 .......... .......... .......... .......... .......... .......... 517 AAGCTAACTT GTCTGTCAAT TTCCATTTAT GAGGAGCTAA TGTTTTATTT TGGCATTTAT 52492 .......... .......... .......... .......... .......... .......... 517 TTAAATCAAT TTAGCTAAGA ATATTCAGTG ATATATACAC CTCCTCAAAA AAATTGTGAT 52432 .......... .......... .......... .......... .......... .......... 517 CTATACTATT GTTTACTGAT GTTACAATTG GTAACCCTTT TTGTTGAAAC CTGGCCACAT 52372 .......... .......... .......... .......... .......... .......... 517 TTTGAAGATA ATCATCACCT TTTTCATTTG TAAGAAGCGA ATTGATAGTT TTAGCAATTA 52312 .......... .......... .......... .......... .......... .......... 517 TGTGTTGTGT TCTGATTACA TTGTTTGGAA ATATTACCTG AAGAAAATTC ATTATGCTTT 52252 .......... .......... .......... .......... .......... .......... 517 CTTTTCATTA ATTTGTCTGG ATGAGATAGT TTTGGCTTCT GGTTAGTGAA ACGTTGTCAT 52192 .......... .......... .......... .......... .......... .......... 517 GTGCTCTGTT TTTCTTAACA AGCTTGTAAT ACAACCTCAC TACTTTTATG TACAAATATA 52132 .......... .......... .......... .......... .......... .......... 517 GTCAAATAGT TATATGCCGA TTCTTGGGTG GAACATGTTT TCTGCACCTA CTTGATCCCA 52072 .......... .......... .......... .......... .......... .......... 517 GCCAGCAGTT ATCCTTTCAA GGACACCCAA ATGAATAGTT GGGATTGAAT GGACCTAAGA 52012 .......... .......... .......... .......... .......... .......... 517 ATCACTTTTC TCCTGTGAGC TGGAAATTTC ATAGGTCTTA AGTTTGATCT GAATTTGAGT 51952 .......... .......... .......... .......... .......... .......... 517 TCCCTGTTGT GGTGCAGATA AAAAGAG 51925 || | | ||| .......... .......TTA ATATGAG 527 hqPGS_C08SLm0119I05.1-_SGN-E212819+ (53962 53692) ******************************************************************************** EST sequence 5 -strand 621 n (File: SGN-E326311-) 1 GTTATAGTAT TGAGAAAGGG AACAGCAATC AAATAGAGGT TGACTGTGAT ACTAAAATCT 61 AAGGTACTAG AGTGGTCTCT TTTTATATTG GGACAGTGAA ACAAATTTCC TTATTTTGTA 121 CAACTAATCA GTAGGGAGTT CCATTAGCTT TAAGTTTCAA AGGAAGGTTA TACAGTTAAT 181 AATTCACGAA GAATGGGAAA GCGTCCAGAT GCAAGAGACT CGGCTCCATA CAGTTATCCA 241 GCATGTAAAT TATTTCTCCC TCCGTTTCAA AAAGGATGGC CTAGTTTGAC TTGGAACAGA 301 GTTTAAGAAA ATAAGCTCTA AATTAAAGTT ATGTAAAATG TACCAAAACG TCCTTTAATC 361 TTGTGTTCTT AAACATGTCA CGTGGAAAGT TAAAGTTAAA GTGTTGCCAA AAAAGGAAAG 421 GGGACATTCT TTTTTAAACA AACTAAAAAG GAAATAGGGA CATTCTTTTT TAAACGGAGG 481 GAGTATAATA TAAAAGATGA TGCCGAGGAG GTTAATGTTA TCAGTTTGAA TTCAAATGAG 541 CTCCTAACAA CACAAAAGGT TGATCAACCT AGGTTCACTG AATTCATAAC TCACAGAATT 601 GTCACTACAC TGAAAACAAA A Predicted gene structure (within gDNA segment 57634 to 49942): Exon 1 54842 54832 ( 11 n); cDNA 239 248 ( 10 n); score: 0.636 Intron 1 54831 53954 ( 878 n); Pd: 0.910 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 53953 53692 ( 262 n); cDNA 249 487 ( 239 n); score: 0.826 Intron 2 53691 51935 (1757 n); Pd: 0.617 (s: 0.79), Pa: 0.991 (s: 0.54) Exon 3 51934 51894 ( 41 n); cDNA 488 527 ( 40 n); score: 0.537 Intron 3 51893 50938 ( 956 n); Pd: 0.900 (s: 0.54), Pa: 0.442 (s: 0) Exon 4 50937 50929 ( 9 n); cDNA 528 536 ( 9 n); score: 0.667 MATCH C08SLm0119I05.1- SGN-E326311- 0.826 323 0.520 C PGS_C08SLm0119I05.1-_SGN-E326311- (54842 54832,53953 53692,51934 51894,50937 50929) Alignment (genomic DNA sequence = upper lines): CATCATTGCA GGCTAGTGTA CTAAAAATTG CACTAGAAAC AAAGGAAGTA CCAGCTAATG 54783 || || || | CAGCA-TGTA A......... .......... .......... .......... .......... 248 TCTATGTTGC GATGAGGTAT TGGCACCCGT TCACCGAGGA AGCTGTTCAC CAGGTAGGCT 54723 .......... .......... .......... .......... .......... .......... 248 CAAAATGCAT CCTCTTGGTT CTTCCAGTTG ACATTTTTTT GTCTTGATCT TTTGTTTGAT 54663 .......... .......... .......... .......... .......... .......... 248 CTTGTCTGTG TCTTCTCTCA TGTGCTCACG ATAATCTCAA CAAGTCATTA GAACACTAGT 54603 .......... .......... .......... .......... .......... .......... 248 TTCATTTATA CTTTTCAAAT AAGTCTAATC TGTTTTGAGA GCTTGAACAT GGGCACAATT 54543 .......... .......... .......... .......... .......... .......... 248 CACAGAAGTA CTAACTAACA AGCACAAATT GTAAATCTTT CTGCTAAACA AAAATAAAGA 54483 .......... .......... .......... .......... .......... .......... 248 ATCAGTAAAA AATCGAGTAA TTCTGTAAGG TAGGATAAAA AATGGTAGAA ATATATGATC 54423 .......... .......... .......... .......... .......... .......... 248 CACCACACAT CTTACAACTA CTTTGACAGT GTTTCTTAGT TTCTCTTATT TTGTTTCCTT 54363 .......... .......... .......... .......... .......... .......... 248 GTGACATAAA ATATATCTTC TGTAGCACAT ATGCTACAAA TCCCAGCTTG TATTCTACAG 54303 .......... .......... .......... .......... .......... .......... 248 TATAATGAGC AAAAATAATG GTATACCATA TGCTTTTTCA TTCTATATCT ATTGTATATA 54243 .......... .......... .......... .......... .......... .......... 248 TAACTTGTAT TACATATTCG CTGCAATTGT TCTATGTTCT GAGTTGCATC GTCATATTTA 54183 .......... .......... .......... .......... .......... .......... 248 GACTTTGAGC TTTACATAGA AAATGGTGTT TAGCTCATCT CTACTATTCT TGTAGTTTCA 54123 .......... .......... .......... .......... .......... .......... 248 CAGGTATATA TAAATATATC TGGTCTTCTC CTTTTCCATT TCTTTCAAGT TTCTTATGAT 54063 .......... .......... .......... .......... .......... .......... 248 TACACACCTT GTCTTACCCT AAAGCAATAT TATCTAGGAT CCTGATTGTA GAGATCTTCT 54003 .......... .......... .......... .......... .......... .......... 248 TTTTTATTGG TAGCTTTAGA AAATCTTTTT GTTGGGGAAG TAGCAGATGA ATAATACTCC 53943 | || | |||| .......... .......... .......... .......... .........A TTATTTCTCC 259 CTCCGTTTAA AAAAGGATGG CCTAATTTGA CTTGGAACGG AGTTTAAGAA AAGAAAGAAG 53883 |||||||| | |||||||||| |||| ||||| |||||||| | |||||||||| || || | CTCCGTTTCA AAAAGGATGG CCTAGTTTGA CTTGGAACAG AGTTTAAGAA AATAA----G 315 ACTTTTTAAT CTTGTGGTTC TAAATTAAAG TTATGTCAAA TGTACCAAAA TGTCCTTTAA 53823 | || |||||||||| |||||| ||| |||||||||| ||||||||| ---------- C-------TC TAAATTAAAG TTATGTAAAA TGTACCAAAA CGTCCTTTAA 358 TCTTGTGGTC TTAAACATGT CATGTGGAAA GTTAAAGTTA AAGTGTTGCC AAAAAAGGAA 53763 ||||||| || |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TCTTGTGTTC TTAAACATGT CACGTGGAAA GTTAAAGTTA AAGTGTTGCC AAAAAAGGAA 418 ATGGGTCATT CTTTTTGAAA CAGACTAAAA AAGAAAT-GA GACATTCTTT TTGTAAACAG 53704 | ||| |||| |||||| ||| || ||||||| | ||||| | |||||||||| || ||||| | AGGGGACATT CTTTTTTAAA CAAACTAAAA AGGAAATAGG GACATTCTTT TT-TAAACGG 477 AGGGAGTAAT GGGTAAAGTT ACAAACAATC ATAACAGATG ATTTTTCTAC TTAATGGATC 53644 ||||||| || AGGGAGT-AT -A........ .......... .......... .......... .......... 487 AGGAGATATC TATTTTATTT GAATCTTCGT CTCCTCACCC AAAAAATAAG ACATGAAAGG 53584 .......... .......... .......... .......... .......... .......... 487 AGAAAAGAAA TAAATAAGAA GAAAGGGGCC TCTCACTCCC TCCTCCCTTC ATATAGTTTT 53524 .......... .......... .......... .......... .......... .......... 487 AGGGAGGGTA CTGAGCTAAA GGTTTTTGTG TTCTTAGTGT TATTTCCTCC TATCTCCTAT 53464 .......... .......... .......... .......... .......... .......... 487 TTCGTCCTCC TCCTCCAAAG AAAATCTTCC ATCTTTTGTT AATCCCAACA GTAATTGACT 53404 .......... .......... .......... .......... .......... .......... 487 GGATTGCACT CATGTATAAC TTAATTAAGT GCCATGTCAT ATTGCTTCTT TCGACTTGAT 53344 .......... .......... .......... .......... .......... .......... 487 TTGCTTTCAG CCATGCATGT GTAAACTGTC TAAACCTAAA GTAAATATTG TACGTGAAAC 53284 .......... .......... .......... .......... .......... .......... 487 AGAAGAATAA GATCTGTTAC AAAACCCTAT GTTTAACAAG AATTATGCCT TAATCCCAAG 53224 .......... .......... .......... .......... .......... .......... 487 CTAGTGGGGA TTATATGAAT CATTGCTACC CATTTCATTC CCATTTAGCT CCACTTCCAA 53164 .......... .......... .......... .......... .......... .......... 487 TCTTCAATAC ATTAGGTTCT CTAAGCCGTG AATTTTGCTA GATTTTCTAT TGACGTATAC 53104 .......... .......... .......... .......... .......... .......... 487 AATCCCTGAC GAAGACTAAG CCTTAATCTC AACTAGGGTG GTACTGCTAA GGGATCCTTT 53044 .......... .......... .......... .......... .......... .......... 487 TCTTTCGTTG TGCTCTATTT TTCTCTAAGT TGCATGGATT CTGTAAGATT ATTGGTATTT 52984 .......... .......... .......... .......... .......... .......... 487 TGAGATAGCT TCCTATTATC ATTACGTTTT TTCACACCTC GAAGGCTCGA ACCCATTGCA 52924 .......... .......... .......... .......... .......... .......... 487 TCAGAAGGTC TACTTAGGAC ATGACCAAAC CATTCAAGCC AACTCTCATT TTTATTAGTA 52864 .......... .......... .......... .......... .......... .......... 487 TGTGCATCTT TTATTGAAAA GTAAGGCACT ACCCAACTAT AAGAAACGTT TATAAGTACT 52804 .......... .......... .......... .......... .......... .......... 487 GCTCATCATT TTACTGATAA AAATAAATTA CTACTCAACT AAAAAAGTTC TATTAAGTAC 52744 .......... .......... .......... .......... .......... .......... 487 TATTGAACTA AAATTGGAGG AATAGAAGGC TTTTTACAAG CAAAATCTGG ATCGAAGTTG 52684 .......... .......... .......... .......... .......... .......... 487 TGAAATTGAG GAACTCTCTT AATGAAACCC TTTTTACCCT TGCAATATGT TAAGATATAG 52624 .......... .......... .......... .......... .......... .......... 487 CTTTTTTTTT TTTTTGGTTT TCAAATCCGG ATAACGTCCA TCTCAGTCCA TGACTAGAAT 52564 .......... .......... .......... .......... .......... .......... 487 GTTGTACAGT ATAAGCTAAC TTGTCTGTCA ATTTCCATTT ATGAGGAGCT AATGTTTTAT 52504 .......... .......... .......... .......... .......... .......... 487 TTTGGCATTT ATTTAAATCA ATTTAGCTAA GAATATTCAG TGATATATAC ACCTCCTCAA 52444 .......... .......... .......... .......... .......... .......... 487 AAAAATTGTG ATCTATACTA TTGTTTACTG ATGTTACAAT TGGTAACCCT TTTTGTTGAA 52384 .......... .......... .......... .......... .......... .......... 487 ACCTGGCCAC ATTTTGAAGA TAATCATCAC CTTTTTCATT TGTAAGAAGC GAATTGATAG 52324 .......... .......... .......... .......... .......... .......... 487 TTTTAGCAAT TATGTGTTGT GTTCTGATTA CATTGTTTGG AAATATTACC TGAAGAAAAT 52264 .......... .......... .......... .......... .......... .......... 487 TCATTATGCT TTCTTTTCAT TAATTTGTCT GGATGAGATA GTTTTGGCTT CTGGTTAGTG 52204 .......... .......... .......... .......... .......... .......... 487 AAACGTTGTC ATGTGCTCTG TTTTTCTTAA CAAGCTTGTA ATACAACCTC ACTACTTTTA 52144 .......... .......... .......... .......... .......... .......... 487 TGTACAAATA TAGTCAAATA GTTATATGCC GATTCTTGGG TGGAACATGT TTTCTGCACC 52084 .......... .......... .......... .......... .......... .......... 487 TACTTGATCC CAGCCAGCAG TTATCCTTTC AAGGACACCC AAATGAATAG TTGGGATTGA 52024 .......... .......... .......... .......... .......... .......... 487 ATGGACCTAA GAATCACTTT TCTCCTGTGA GCTGGAAATT TCATAGGTCT TAAGTTTGAT 51964 .......... .......... .......... .......... .......... .......... 487 CTGAATTTGA GTTCCCTGTT GTGGTGCAGA TAAAAAGAGA TGGGATTACA AAGCTTGTTG 51904 | || ||| ||| || || || || .......... .......... .........A TATAAA-AGA TGATGCCGAG GAGGTTAATG 517 TACTGCCTTT ATATCCTCAA TACTCTATCT CTACAACTGG TTCTAGTGTC CGTGCCCTTC 51844 | | ||| TTATCAGTTT .......... .......... .......... .......... .......... 527 AGAATATTTT CAAGTAACTC TCTTTTTCTT TTCAATTTGG TTACTGCATT TATGGAGTCT 51784 .......... .......... .......... .......... .......... .......... 527 CATGTTCTTA AATTGAAGTG TATGCACATA CATTTTCCTG TCTCTGATCA ATATCTGAAC 51724 .......... .......... .......... .......... .......... .......... 527 TTTTTGTGCA CTCCCAGAGG AGACTCTTAT CTGTCCAGAC TGCCAGTTGC AGTCATTGAA 51664 .......... .......... .......... .......... .......... .......... 527 TCCTGGTACC AACGACAAGG TTACATCAAG TCCATGGCAA ACTTGATTGA GCAGGAGTTA 51604 .......... .......... .......... .......... .......... .......... 527 CATAATTTCA CTAAGCCTGA GGAGGTAGCA TATCTTATTT TGGGTGTCCT CAGTTTCTGA 51544 .......... .......... .......... .......... .......... .......... 527 TCATCATGGT TATGCTTTTA GTTTGGTGAT GAACCTTTCT TTATCATTAC TGGGAATTTT 51484 .......... .......... .......... .......... .......... .......... 527 TTACTATTTC CTACTCAATT CTAAGAGGGA TGTATTTTCA GGTAATGATT TTCTTTAGTG 51424 .......... .......... .......... .......... .......... .......... 527 CCCATGGAGT GCCAATCAGT TATGTTGAAA ATGCTGGTGA TCCATATAGA GATCAGATGG 51364 .......... .......... .......... .......... .......... .......... 527 AGGAGTGCAT TTTCTTGATA ATGAAAGAGC TGAAAGCTAG AGAAATCAAT AATGATCATA 51304 .......... .......... .......... .......... .......... .......... 527 CCTTGGCTTA CCAGGTTTCT CCTAAAGCTC AAGTCCTCCA GATCACTTTT TGTGTTACCT 51244 .......... .......... .......... .......... .......... .......... 527 GTATTCTCCA AATTCTGCAA TACCATATAC ATTCAGCTCT TCCTAATGGT GCCCTCTAAG 51184 .......... .......... .......... .......... .......... .......... 527 TGATTTATTA GATATTGGAA ATAAATGTAT TTTTCCACGC TGCAATGACT CAAAGTTCAG 51124 .......... .......... .......... .......... .......... .......... 527 TTTAGCCAAA TTCTCTGTGC TTTTACGGAT CATTCCATAT TTTTCTCCTT TTTTTTTCCT 51064 .......... .......... .......... .......... .......... .......... 527 TCCTCCTATT TTTAAAACAG CCTTTTCTTG TGAGGAAGTT TGTAGGGGTT TGAGACAGAA 51004 .......... .......... .......... .......... .......... .......... 527 TTTGACTACC CTTTTCCCCA ATTTACTTCT ATTTTGTTGT TTCACAAAAT ATTACGTTTC 50944 .......... .......... .......... .......... .......... .......... 527 CCCCAGAAAT GCCAA 50929 ||| | || ......GAAT TCAAA 536 hqPGS_C08SLm0119I05.1-_SGN-E326311- (53953 53692) ******************************************************************************** EST sequence 90 +strand 580 n (File: SGN-E318957+) 1 AAGGGATGGT TTTTGGAGAG AATTTTTTTT TTTTACATCT TGTGATAGAA AAGAATTATT 61 GAAAGAGTTT AGTCATAAGA AGATTTTACA ATAGTTTAAG CACACCTATA TATCTATTGA 121 AGTTGAATTA AAAACAAAAG GATTGCGGGG TTTTTGATTA TCATTTGAAC TCGAAGTTGT 181 GTAGTGGAAG GTCATCCCCT TGCTCGTTTC GTCTCCAGCT CGCTGCCCCG AAGAAGTTGA 241 GTTTTAGGCT GAATTGTCTT GGCAAGATAA GACGAGTGCC ATCAAGTCCA TTTTTGGTTC 301 GTGACATCCG TTTGTATATT TTGTTTGCAA ATATACAAAC AAGGTAAGTA TATACAAATT 361 CTGCATTTAT ACATATAAGA AATTTTCAGA ACTATTGTGC TTGTCAATAT ACAAACATAG 421 TAATTTATTA CTCCCTTCGT TTCAAAAGGA TGACCTAGTT TGACTTGGAA CAGAGTGTAA 481 GAAAAGAAAG AAAACTCTAA TCTTGTGGTT CTAAATTAAA GTTATGTCAA ATGTACCAAA 541 ATGCTCTTTA ATCTTGTGGT CTTAAATATG ACACGTGGAA Predicted gene structure (within gDNA segment 59446 to 53058): Exon 1 57222 57210 ( 13 n); cDNA 345 357 ( 13 n); score: 0.692 Intron 1 57209 55530 (1680 n); Pd: 0.000 (s: 0), Pa: 0.970 (s: 0) Exon 2 55529 55525 ( 5 n); cDNA 358 362 ( 5 n); score: 0.800 Intron 2 55524 55086 ( 439 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 3 55085 55056 ( 30 n); cDNA 363 390 ( 28 n); score: 0.667 Intron 3 55055 54832 ( 224 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0) Exon 4 54831 54794 ( 38 n); cDNA 391 425 ( 35 n); score: 0.605 Intron 4 54793 53952 ( 842 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.86) Exon 5 53951 53794 ( 158 n); cDNA 426 580 ( 155 n); score: 0.892 PPA cDNA 34 22 MATCH C08SLm0119I05.1- SGN-E318957+ 0.892 244 0.421 C PGS_C08SLm0119I05.1-_SGN-E318957+ (57222 57210,55529 55525,55085 55056,54831 54794,53951 53794) Alignment (genomic DNA sequence = upper lines): TAAAAATGCA CAAGTATCCC CTAGAGAAGA ATTGAAATTC TAGAGACACA TTAACTAAAC 57163 ||| || | ||| TAAGTATATA CAA....... .......... .......... .......... .......... 357 TGAAGTTCTA TTACTCCTGA ACTTATTATT TTGTAATTTT GTGCACATTT TTACTTACGT 57103 .......... .......... .......... .......... .......... .......... 357 GGCATTCAAA TATCTCCCAC ATATCTCAAT TGCGTGAAAT CGCAGAGTGT GCCACGTGAA 57043 .......... .......... .......... .......... .......... .......... 357 ACAAAAGATG CAGAAAATTA GAGACAAGGT TTAAAATAAT CCCTCATCTT TGGGTTAAGG 56983 .......... .......... .......... .......... .......... .......... 357 CTTGAAGTCA TCCTTCAATT TGTAAATGGA GCATTAACGG TCTCTCGTGC TTGCAATATT 56923 .......... .......... .......... .......... .......... .......... 357 GGTGCACTTT TGGTCTTCAT TCAAAAGTGT TTTTCTTCTC ACAATCTCTC ACGTGAAGTT 56863 .......... .......... .......... .......... .......... .......... 357 ATTATATCTA TTAAAAATAT ATATAATGAT GATTAAAAAT TTCATACATA AATTATGAAT 56803 .......... .......... .......... .......... .......... .......... 357 AAAATCAATG TTAAAAAATA GATAGTTTTG AATAAGGACA AAAAATGTAC AAATATTGCA 56743 .......... .......... .......... .......... .......... .......... 357 AAGACGAAGG ATTATTAAAG CTTCATGTGA AAACTCTAGA TGACTTTGAC TCTTAACCCA 56683 .......... .......... .......... .......... .......... .......... 357 AAGATATACT ATTTTAGATC TTTTTGATCA TAATCTAAAA AGATACTTAT GCATTTTTTC 56623 .......... .......... .......... .......... .......... .......... 357 TTTTATTCAT GATATCTTAA TATGTTGATC AATTTATATT ATATATATAT ATATATATAT 56563 .......... .......... .......... .......... .......... .......... 357 ATATATATAT AAAATATAAA AGGCAGAGAA TAGTTTTAAT AGCACCTTCA AAAGAGAAAA 56503 .......... .......... .......... .......... .......... .......... 357 GAAGTCGCAA TTGACGGTTT TGTTTGAAGA AAAATGGTGT TAGGTGAGTT GCTACATCAA 56443 .......... .......... .......... .......... .......... .......... 357 TAGCTATGAA CACGTCTTCG TTATTCCTCT CCTCTTTTTT TTATTTATAC ATTTCTCTCC 56383 .......... .......... .......... .......... .......... .......... 357 ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT TTACTTTTTT 56323 .......... .......... .......... .......... .......... .......... 357 AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT TCTGCATTTA 56263 .......... .......... .......... .......... .......... .......... 357 ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT TTTGGAAAGT 56203 .......... .......... .......... .......... .......... .......... 357 TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC TCTCGACTTC 56143 .......... .......... .......... .......... .......... .......... 357 TTAAACCGAC TAAGGTTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC TCTTCCATGT 56083 .......... .......... .......... .......... .......... .......... 357 AAGCTTTTAT GGGTTTTCAT TTTCTTGGAA ATTCCTTTCT TTTTTTCATA TGGGTTGCTC 56023 .......... .......... .......... .......... .......... .......... 357 TTAAATTTTG TTATTGTCAA TTATATGTTT TTATAAGAAT TCAGTTCCTT TTTTCTTTGT 55963 .......... .......... .......... .......... .......... .......... 357 TGTAACGTTT GATTTGATCA ATTATATGAA TAACTGTTTG AAAAAGTCAG AATCTTGATG 55903 .......... .......... .......... .......... .......... .......... 357 AAAGGTTTAG GATGTTTTGG GTTTGGCTGG TGAATGAGGT CATTTGTTAT GCAGAAGTTG 55843 .......... .......... .......... .......... .......... .......... 357 TTGGTTCTTT TATAATCAAA TACCAACTTA TGATATGGGG AAAATGCTTT GCGTACATTA 55783 .......... .......... .......... .......... .......... .......... 357 TTTAGAAAGT TACTCTATAA CTTTGTAATG ACAATCTAAT AATGGGAGTG TATCAAGTAT 55723 .......... .......... .......... .......... .......... .......... 357 GATGACTCGA TAGATCTTGT GGAGAAAAGA AACTTTTTAG TGAGGAGATG CACATAGATT 55663 .......... .......... .......... .......... .......... .......... 357 TTTCATTTCC ATGCTGATTT CAATGCCAAA ATGATGCACT AAACTTTTTA ATGAGGAGAT 55603 .......... .......... .......... .......... .......... .......... 357 AGACATAGAT TTTTCATTTC CATGCTAATT TCAATGCCGG AATGATGTAC TGAATGAATC 55543 .......... .......... .......... .......... .......... .......... 357 TTTATCCTGG CAGATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT TCCTCACATG 55483 || || .......... ...ATTCT.. .......... .......... .......... .......... 362 GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT GAACTCACTC 55423 .......... .......... .......... .......... .......... .......... 362 TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACATCG CCCAGTGCAC AAGAGAGATG 55363 .......... .......... .......... .......... .......... .......... 362 TAGTTGGCAA GACGTTCTGC TCTGTTGGAT TGTCTACATT TCCGGGGAGC ATCGTTGAGT 55303 .......... .......... .......... .......... .......... .......... 362 CTTCTTCCCA GACAACTGAA GAAAAGATCG GAGTGCTACT TTTGAATCTT GGAGGGCCAG 55243 .......... .......... .......... .......... .......... .......... 362 ACACACTTCA TGATGTCCAG CCTTTTCTGT TCAACTTATT TGCTGATCCT GTATGCTAAC 55183 .......... .......... .......... .......... .......... .......... 362 AATCAGTCTT AACTCATTTT TTTTCCTAAG CTGGAGATTT TGGGCAATTT CGTTCTTTGT 55123 .......... .......... .......... .......... .......... .......... 362 TTGTGTTTAT GCTAATGGTA TGAATTTCAC ATGGCAGGAC ATTATACGTC TACCCAGATT 55063 | |||||| | || | ||| .......... .......... .......... .......GCA TTTATACATA TA-AGAAATT 384 GTTCAGATTT CTCCAGCGCC CATTGGCACA ACTTATATCT GTTCTCCGAG CTCCGAAAAG 55003 |||||| -TTCAGA... .......... .......... .......... .......... .......... 390 CAAGGAAGGA TATGCTGCAA TTGGAGGTGG TTCTCCTTTA CGAAAAATAA CAGATGAGCA 54943 .......... .......... .......... .......... .......... .......... 390 GGTATAGGAA AACCCCTTTT TATTTATGTG CTCTGTGCTA AAAAATTCTT TCTACTTCAT 54883 .......... .......... .......... .......... .......... .......... 390 TATGCTGGTG TCATTTTCAA CTTGTTAACC CTCTTAAGCT CATCATTGCA GGCTAGTGTA 54823 ||| ||| .......... .......... .......... .......... .......... .ACTATTGTG 399 CTAAAAATTG CACTAGAAAC AAAGGAAGTA CCAGCTAATG TCTATGTTGC GATGAGGTAT 54763 || | | | || |||| | || || | CTTGTCAAT- -A-TACAAAC ATAGTAATT. .......... .......... .......... 425 TGGCACCCGT TCACCGAGGA AGCTGTTCAC CAGGTAGGCT CAAAATGCAT CCTCTTGGTT 54703 .......... .......... .......... .......... .......... .......... 425 CTTCCAGTTG ACATTTTTTT GTCTTGATCT TTTGTTTGAT CTTGTCTGTG TCTTCTCTCA 54643 .......... .......... .......... .......... .......... .......... 425 TGTGCTCACG ATAATCTCAA CAAGTCATTA GAACACTAGT TTCATTTATA CTTTTCAAAT 54583 .......... .......... .......... .......... .......... .......... 425 AAGTCTAATC TGTTTTGAGA GCTTGAACAT GGGCACAATT CACAGAAGTA CTAACTAACA 54523 .......... .......... .......... .......... .......... .......... 425 AGCACAAATT GTAAATCTTT CTGCTAAACA AAAATAAAGA ATCAGTAAAA AATCGAGTAA 54463 .......... .......... .......... .......... .......... .......... 425 TTCTGTAAGG TAGGATAAAA AATGGTAGAA ATATATGATC CACCACACAT CTTACAACTA 54403 .......... .......... .......... .......... .......... .......... 425 CTTTGACAGT GTTTCTTAGT TTCTCTTATT TTGTTTCCTT GTGACATAAA ATATATCTTC 54343 .......... .......... .......... .......... .......... .......... 425 TGTAGCACAT ATGCTACAAA TCCCAGCTTG TATTCTACAG TATAATGAGC AAAAATAATG 54283 .......... .......... .......... .......... .......... .......... 425 GTATACCATA TGCTTTTTCA TTCTATATCT ATTGTATATA TAACTTGTAT TACATATTCG 54223 .......... .......... .......... .......... .......... .......... 425 CTGCAATTGT TCTATGTTCT GAGTTGCATC GTCATATTTA GACTTTGAGC TTTACATAGA 54163 .......... .......... .......... .......... .......... .......... 425 AAATGGTGTT TAGCTCATCT CTACTATTCT TGTAGTTTCA CAGGTATATA TAAATATATC 54103 .......... .......... .......... .......... .......... .......... 425 TGGTCTTCTC CTTTTCCATT TCTTTCAAGT TTCTTATGAT TACACACCTT GTCTTACCCT 54043 .......... .......... .......... .......... .......... .......... 425 AAAGCAATAT TATCTAGGAT CCTGATTGTA GAGATCTTCT TTTTTATTGG TAGCTTTAGA 53983 .......... .......... .......... .......... .......... .......... 425 AAATCTTTTT GTTGGGGAAG TAGCAGATGA ATAATACTCC CTCCGTTTAA AAAAGGATGG 53923 || |||||| || ||||| ||||||||| .......... .......... .......... .TATTACTCC CTTCGTTT-C AAAAGGATGA 453 CCTAATTTGA CTTGGAACGG AGTTTAAGAA AAGAAAGAAG ACTTTTTAAT CTTGTGGTTC 53863 |||| ||||| |||||||| | ||| |||||| ||||||||| || | |||| |||||||||| CCTAGTTTGA CTTGGAACAG AGTGTAAGAA AAGAAAGAAA AC--TCTAAT CTTGTGGTTC 511 TAAATTAAAG TTATGTCAAA TGTACCAAAA TGTCCTTTAA TCTTGTGGTC TTAAACATGT 53803 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| ||||| ||| TAAATTAAAG TTATGTCAAA TGTACCAAAA TGCTCTTTAA TCTTGTGGTC TTAAATATGA 571 CATGTGGAA 53794 || |||||| CACGTGGAA 580 hqPGS_C08SLm0119I05.1-_SGN-E318957+ (53951 53794) ******************************************************************************** EST sequence 34 -strand 696 n (File: SGN-E376578-) 1 AAGTTTAGGG TCCAATATAT GTATTATCCC TAATTAATTT GTACTCTTTA GCTCCTTGCA 61 GGAAGTATAG GGAGCTGGTG TATTTTGTAT CCACTTTGAA GAGGTACTTG GTGCTAATGT 121 AGCCAATGTA ATGAAATTCT TTTACTTGTC AAAAGAAAGC AGAAATCAAA AGGCTCTAGA 181 AGTTCTGATA AGAAAGTAAG TATATATGAT AAACACATGT GAAGGCAACA TGCTGCAAGT 241 TACAAATCCA GAGATTTGAT AATTATGTGA ATATTATAAA AAAGGTAAGC ATCACTATAT 301 GATGCAAGAT CTTTCGTACA ACTAGATATA TTAGAAATAT TAGAATACAC TAAGGTGAAA 361 ATTCTGAAAA GCTTCCCCAG CATATTACCA AGATAATGAT TCGGCAACCA TTTCAAGTTG 421 GACAAGAAAA AAAGATCTCA TAATTCTATG GTGTACACTT TCACCATCTC ATTGAGAAAA 481 CAAAACCAAC TCTAAATTTC CAAAATAGTA CTCCCTTCAT TTAAAAAAGA ATGACCTAGT 541 TTGACTTGGA ACGGAGTTTA AGAAAAGAAG AAGACTTTTT AATTTTGTGG TTCTAAATTA 601 AAGTTATGTC AAATGTACCA AAATGTCGTC TTAAACATGT CACTTGGAAA GTTAAAACAA 661 AATGAAAGGA GTCATTCTTT TTTAAACAAA CTAAAA Predicted gene structure (within gDNA segment 60517 to 52539): Exon 1 59743 59731 ( 13 n); cDNA 423 434 ( 12 n); score: 0.923 Intron 1 59730 58341 (1390 n); Pd: 0.979 (s: 0), Pa: 0.386 (s: 0) Exon 2 58340 58326 ( 15 n); cDNA 435 450 ( 16 n); score: 0.500 Intron 2 58325 57058 (1268 n); Pd: 0.294 (s: 0), Pa: 0.810 (s: 0.56) Exon 3 57057 57015 ( 43 n); cDNA 451 489 ( 39 n); score: 0.558 Intron 3 57014 54845 (2170 n); Pd: 0.843 (s: 0.56), Pa: 0.176 (s: 0) Exon 4 54844 54832 ( 13 n); cDNA 490 502 ( 13 n); score: 0.538 Intron 4 54831 53955 ( 877 n); Pd: 0.910 (s: 0), Pa: 0.000 (s: 0.86) Exon 5 53954 53834 ( 121 n); cDNA 503 622 ( 120 n); score: 0.926 MATCH C08SLm0119I05.1- SGN-E376578- 0.926 205 0.295 C PGS_C08SLm0119I05.1-_SGN-E376578- (59743 59731,58340 58326,57057 57015,54844 54832,53954 53834) Alignment (genomic DNA sequence = upper lines): CAAGAAATAA AAGGTTCTCT AAAAAAACTC TCAAACACCT ATACTAATAA CTCCTTATAA 59684 ||||||| || ||| CAAGAAA-AA AAG....... .......... .......... .......... .......... 434 GTGTACCAAA AGTCTCTAGA AATCGAAGAC CCTGATATGA ACATATTTTT CAGACCTTCA 59624 .......... .......... .......... .......... .......... .......... 434 AGGCTTTCTT GTTCATTTCC CTTCAAAGTA TGCACACAGC AGTCAATAAG CTACATTCCA 59564 .......... .......... .......... .......... .......... .......... 434 TTTAACAGGA ACTTCAAATT ACATGCCTTT TATCTTGGGT TTAGGTTTAA AGCTTTTTAT 59504 .......... .......... .......... .......... .......... .......... 434 TTAGCCGTAA TTTATTTAGT TTGTTTGATA AAGTCATTTT CTTGAAGATT GTACTTTGTG 59444 .......... .......... .......... .......... .......... .......... 434 AAAAATGTAG CTTTATTTAT TTGAATAAGA ACTTTGTGAA CTTCTGAAAG AATCAGGATG 59384 .......... .......... .......... .......... .......... .......... 434 TTGTATCCAT TAGACCATCA AAATCGGCTA ACGGTTTTAG TTTCTGTGAG CTTCACTTAT 59324 .......... .......... .......... .......... .......... .......... 434 ATGCTGCTAA AATAGCACAT ATCTGAAGTT GAAGATGATA CTCAACTATG AGCACCTTTT 59264 .......... .......... .......... .......... .......... .......... 434 AGGAAAGAAA AAAAGAAAAG AACACAAACA TGCTTGTACT CTTGACTTAG TTATTTTAGA 59204 .......... .......... .......... .......... .......... .......... 434 TTTATTTATA TCTTTGATTT GTCATGTGCA AGCTAGGCTA AAAATCACTT ACTTTCAAAT 59144 .......... .......... .......... .......... .......... .......... 434 CCCTATATAC AATGTCAGTA ATAATAATTA GCAGTATTTT CTGTATTTCG AAAATTACAT 59084 .......... .......... .......... .......... .......... .......... 434 ATTAACAAAA GTCACTTTTT CAGAAGTGCC ATAGTCTAAG AACTTTAAGA TTTGGGGCAC 59024 .......... .......... .......... .......... .......... .......... 434 CAATTCTACA ATTTACTAAG CATTAATACT ATATAATAAT TAACATTGTG AGAATGATGA 58964 .......... .......... .......... .......... .......... .......... 434 GGTTGAATGA TTGATTTATA ACTGAACTGA TATGTTACTC GAAGTTATAG ATGTATAATA 58904 .......... .......... .......... .......... .......... .......... 434 GTACAATTTA TGGTGAAGCA CTACAAATTT CATGAATATT TGTATGGTTT AGGTCCCCTG 58844 .......... .......... .......... .......... .......... .......... 434 ATTTTGTGTT GTGAGTTAAA GAATTTTCTT TCGCTTTGTC ATCTTGATCA TCTTTATAAA 58784 .......... .......... .......... .......... .......... .......... 434 ACTCTCACTT ATCAAGAAAA TAAATGGTCT GTTGGAAAGC TCAATACATC TAGTTATTTG 58724 .......... .......... .......... .......... .......... .......... 434 AGATTTTGGG TTAGAATGTT ATGGCATGCT TAAATATCAA CAAAATTTAT TTGTAAGATA 58664 .......... .......... .......... .......... .......... .......... 434 ACATATATCA TGTTTGAAGA TATTGATGCT CATGTCGGGG ATGTGAATGA TCTTGCCATT 58604 .......... .......... .......... .......... .......... .......... 434 GGTCACCCAA AATAACAATT ATGTGTAGTT ATATTGAGAT GTAAAGTAGA TGATGCTAAC 58544 .......... .......... .......... .......... .......... .......... 434 ATCTATACTC TTCTTGCGGG AATCTATAAT CTGCGGTTGT GAATTCTTCT AGGAGTAATA 58484 .......... .......... .......... .......... .......... .......... 434 TTTTGAATTA CGTTCGATAG CTATGAATCC TTCTAAGAAT GTAAAATTGA ATTAAATTCG 58424 .......... .......... .......... .......... .......... .......... 434 ACATAATAGA AATTAGAGGG GGACCAAAGC CGTTTGATTT TGAATGATAT GAGGCTCTTA 58364 .......... .......... .......... .......... .......... .......... 434 TGCACTTAAT ATACCCTTAT CAGA-CCCAT AGATCTCAGG TTATTTTTAA GAAATGAAGA 58305 | | ||| | ||| | .......... .......... ...ATCTCAT AATTCTATG. .......... .......... 450 TAGAGGGTCA CTTGGGCCAT GTTTTGTGTT ATTTGTCACA ACTGATAGTT TGTAACTTTG 58245 .......... .......... .......... .......... .......... .......... 450 TTAGTAATTT TTTATAATTT CATAAGACAT ATAATATATA CCTACATCTG ACCCAAGTGT 58185 .......... .......... .......... .......... .......... .......... 450 TCTACCATCG TCTTTCAGTG CAGGTGTCTT TGTAATCTAG AGCAAAGATG GTTGTGCCAA 58125 .......... .......... .......... .......... .......... .......... 450 GTTCAAGAAG TGCACCATGG TAAACAAGAA GAATCCGTAG AATTATGACT GAACTGTTGT 58065 .......... .......... .......... .......... .......... .......... 450 AGGAATAGAC GCGACAATAA TATTCTACGG ACTACTTCAA TTGGATAAAT CTCGAGCTAC 58005 .......... .......... .......... .......... .......... .......... 450 ATTTGTCAGA TAGAAATAGT TTCATATCAT GACGGATATG CATTCAGTTT TTAGCTTTAT 57945 .......... .......... .......... .......... .......... .......... 450 AGTTTTTGTA AACAAGTTTG TAATTACGAT CCAAGTATGA GTAATGAAGA TAATGTTTGC 57885 .......... .......... .......... .......... .......... .......... 450 ATGTACCACT AAAATAACTT GGGTACATAA TCAATTGTGT TGGGCCCGTG CAAAGCACGG 57825 .......... .......... .......... .......... .......... .......... 450 ACTTGCTTAT CTAGTATTAC ATAGATAATA CAAGAGTACC AATATATATC ATTGGGAAAA 57765 .......... .......... .......... .......... .......... .......... 450 TGCACAAGTA CTCCCTCAAT CTATGCCTGA AATTTCAGAG ACATACTTAT ACTATACTAA 57705 .......... .......... .......... .......... .......... .......... 450 GGTTCTATTA CCCTCCTGAA CTTATTTTAT AAGTAATTTT CTATCCCTTT TAGGCCTACG 57645 .......... .......... .......... .......... .......... .......... 450 TGACACTAGT TTGAAAGAAA AAGTCAACCA ATATTGGGCC CACAAGATAG TGCCACGTAA 57585 .......... .......... .......... .......... .......... .......... 450 GGCAAAAAGT GGTAGAATAT TATTAATAAA ATAAGTTCAG GGGGTAATAG CACCTTTGTA 57525 .......... .......... .......... .......... .......... .......... 450 TAGTATAAGT GTGTCTCTGA GATTTTGTGC ATAGGTTGAG GGGTACTTAT GCATTATCCT 57465 .......... .......... .......... .......... .......... .......... 450 TATATTAATT GAGACTATAA AATTGACAAA CAAAAGTAAT GCATTTTAAC TTCAATTTTT 57405 .......... .......... .......... .......... .......... .......... 450 ACACAAATAT CCATAGCTAA TGCCAAATTT TATGCCAAGA GTGTTATGTA AAGATACTCC 57345 .......... .......... .......... .......... .......... .......... 450 TTCCGTCCTG TATTAGTTGA TCGTATTAAT CATTCATTTT ATTAAATTAA AGAAATATTA 57285 .......... .......... .......... .......... .......... .......... 450 ATTAAAAAAT TTCATATTGT ATTTACAATT ATTCTTTTAA AAAATATTAT CCTTTTATTC 57225 .......... .......... .......... .......... .......... .......... 450 AGTAAAAATG CACAAGTATC CCCTAGAGAA GAATTGAAAT TCTAGAGACA CATTAACTAA 57165 .......... .......... .......... .......... .......... .......... 450 ACTGAAGTTC TATTACTCCT GAACTTATTA TTTTGTAATT TTGTGCACAT TTTTACTTAC 57105 .......... .......... .......... .......... .......... .......... 450 GTGGCATTCA AATATCTCCC ACATATCTCA ATTGCGTGAA ATCGCAGAGT GTGCCACGTG 57045 || || ||| | .......... .......... .......... .......... .......-GT GT-ACACTTT 461 AAACAAAAGA TGCAGAAAAT TAGAGACAAG GTTTAAAATA ATCCCTCATC TTTGGGTTAA 56985 | || | | |||||| | | || | CACCATCTCA TTGAGAAAA- CA-AAACCAA .......... .......... .......... 489 GGCTTGAAGT CATCCTTCAA TTTGTAAATG GAGCATTAAC GGTCTCTCGT GCTTGCAATA 56925 .......... .......... .......... .......... .......... .......... 489 TTGGTGCACT TTTGGTCTTC ATTCAAAAGT GTTTTTCTTC TCACAATCTC TCACGTGAAG 56865 .......... .......... .......... .......... .......... .......... 489 TTATTATATC TATTAAAAAT ATATATAATG ATGATTAAAA ATTTCATACA TAAATTATGA 56805 .......... .......... .......... .......... .......... .......... 489 ATAAAATCAA TGTTAAAAAA TAGATAGTTT TGAATAAGGA CAAAAAATGT ACAAATATTG 56745 .......... .......... .......... .......... .......... .......... 489 CAAAGACGAA GGATTATTAA AGCTTCATGT GAAAACTCTA GATGACTTTG ACTCTTAACC 56685 .......... .......... .......... .......... .......... .......... 489 CAAAGATATA CTATTTTAGA TCTTTTTGAT CATAATCTAA AAAGATACTT ATGCATTTTT 56625 .......... .......... .......... .......... .......... .......... 489 TCTTTTATTC ATGATATCTT AATATGTTGA TCAATTTATA TTATATATAT ATATATATAT 56565 .......... .......... .......... .......... .......... .......... 489 ATATATATAT ATAAAATATA AAAGGCAGAG AATAGTTTTA ATAGCACCTT CAAAAGAGAA 56505 .......... .......... .......... .......... .......... .......... 489 AAGAAGTCGC AATTGACGGT TTTGTTTGAA GAAAAATGGT GTTAGGTGAG TTGCTACATC 56445 .......... .......... .......... .......... .......... .......... 489 AATAGCTATG AACACGTCTT CGTTATTCCT CTCCTCTTTT TTTTATTTAT ACATTTCTCT 56385 .......... .......... .......... .......... .......... .......... 489 CCATCCAATT AGCTTCCATA AACCCTATAT TTCTTTGACT CTTCTCAATA TTTTACTTTT 56325 .......... .......... .......... .......... .......... .......... 489 TTAGCCAACC CCTTTAATTT TCTCACAAAA ATTTCCACAA ACTATACTTT TTTCTGCATT 56265 .......... .......... .......... .......... .......... .......... 489 TAATAGTATT ATTTTTCTTT CAAACCCATA AAAAACTAGA ATAAGATCTC TTTTTGGAAA 56205 .......... .......... .......... .......... .......... .......... 489 GTTTTGATAG AAGAAAATCA TCACATAGTA GATCATGGAA ACAGGGACGA TCTCTCGACT 56145 .......... .......... .......... .......... .......... .......... 489 TCTTAAACCG ACTAAGGTTC CAAGTTCTAG TTTTTCCAGT TTCACTTCTA ACTCTTCCAT 56085 .......... .......... .......... .......... .......... .......... 489 GTAAGCTTTT ATGGGTTTTC ATTTTCTTGG AAATTCCTTT CTTTTTTTCA TATGGGTTGC 56025 .......... .......... .......... .......... .......... .......... 489 TCTTAAATTT TGTTATTGTC AATTATATGT TTTTATAAGA ATTCAGTTCC TTTTTTCTTT 55965 .......... .......... .......... .......... .......... .......... 489 GTTGTAACGT TTGATTTGAT CAATTATATG AATAACTGTT TGAAAAAGTC AGAATCTTGA 55905 .......... .......... .......... .......... .......... .......... 489 TGAAAGGTTT AGGATGTTTT GGGTTTGGCT GGTGAATGAG GTCATTTGTT ATGCAGAAGT 55845 .......... .......... .......... .......... .......... .......... 489 TGTTGGTTCT TTTATAATCA AATACCAACT TATGATATGG GGAAAATGCT TTGCGTACAT 55785 .......... .......... .......... .......... .......... .......... 489 TATTTAGAAA GTTACTCTAT AACTTTGTAA TGACAATCTA ATAATGGGAG TGTATCAAGT 55725 .......... .......... .......... .......... .......... .......... 489 ATGATGACTC GATAGATCTT GTGGAGAAAA GAAACTTTTT AGTGAGGAGA TGCACATAGA 55665 .......... .......... .......... .......... .......... .......... 489 TTTTTCATTT CCATGCTGAT TTCAATGCCA AAATGATGCA CTAAACTTTT TAATGAGGAG 55605 .......... .......... .......... .......... .......... .......... 489 ATAGACATAG ATTTTTCATT TCCATGCTAA TTTCAATGCC GGAATGATGT ACTGAATGAA 55545 .......... .......... .......... .......... .......... .......... 489 TCTTTATCCT GGCAGATGCT GCTCGCGGAC AAGGTTAATG CCTCCTTTCC ATTCCTCACA 55485 .......... .......... .......... .......... .......... .......... 489 TGGTGGGCGA GAAATGAATT CTGATGAGCG GGAGATTACA ATTTTATCTT CTGAACTCAC 55425 .......... .......... .......... .......... .......... .......... 489 TCTCAAAAAA AGCAGTGTAG TTGAGGGATT GTCTTTACAT CGCCCAGTGC ACAAGAGAGA 55365 .......... .......... .......... .......... .......... .......... 489 TGTAGTTGGC AAGACGTTCT GCTCTGTTGG ATTGTCTACA TTTCCGGGGA GCATCGTTGA 55305 .......... .......... .......... .......... .......... .......... 489 GTCTTCTTCC CAGACAACTG AAGAAAAGAT CGGAGTGCTA CTTTTGAATC TTGGAGGGCC 55245 .......... .......... .......... .......... .......... .......... 489 AGACACACTT CATGATGTCC AGCCTTTTCT GTTCAACTTA TTTGCTGATC CTGTATGCTA 55185 .......... .......... .......... .......... .......... .......... 489 ACAATCAGTC TTAACTCATT TTTTTTCCTA AGCTGGAGAT TTTGGGCAAT TTCGTTCTTT 55125 .......... .......... .......... .......... .......... .......... 489 GTTTGTGTTT ATGCTAATGG TATGAATTTC ACATGGCAGG ACATTATACG TCTACCCAGA 55065 .......... .......... .......... .......... .......... .......... 489 TTGTTCAGAT TTCTCCAGCG CCCATTGGCA CAACTTATAT CTGTTCTCCG AGCTCCGAAA 55005 .......... .......... .......... .......... .......... .......... 489 AGCAAGGAAG GATATGCTGC AATTGGAGGT GGTTCTCCTT TACGAAAAAT AACAGATGAG 54945 .......... .......... .......... .......... .......... .......... 489 CAGGTATAGG AAAACCCCTT TTTATTTATG TGCTCTGTGC TAAAAAATTC TTTCTACTTC 54885 .......... .......... .......... .......... .......... .......... 489 ATTATGCTGG TGTCATTTTC AACTTGTTAA CCCTCTTAAG CTCATCATTG CAGGCTAGTG 54825 ||| ||| | .......... .......... .......... .......... CTCTAAATTT CCA....... 502 TACTAAAAAT TGCACTAGAA ACAAAGGAAG TACCAGCTAA TGTCTATGTT GCGATGAGGT 54765 .......... .......... .......... .......... .......... .......... 502 ATTGGCACCC GTTCACCGAG GAAGCTGTTC ACCAGGTAGG CTCAAAATGC ATCCTCTTGG 54705 .......... .......... .......... .......... .......... .......... 502 TTCTTCCAGT TGACATTTTT TTGTCTTGAT CTTTTGTTTG ATCTTGTCTG TGTCTTCTCT 54645 .......... .......... .......... .......... .......... .......... 502 CATGTGCTCA CGATAATCTC AACAAGTCAT TAGAACACTA GTTTCATTTA TACTTTTCAA 54585 .......... .......... .......... .......... .......... .......... 502 ATAAGTCTAA TCTGTTTTGA GAGCTTGAAC ATGGGCACAA TTCACAGAAG TACTAACTAA 54525 .......... .......... .......... .......... .......... .......... 502 CAAGCACAAA TTGTAAATCT TTCTGCTAAA CAAAAATAAA GAATCAGTAA AAAATCGAGT 54465 .......... .......... .......... .......... .......... .......... 502 AATTCTGTAA GGTAGGATAA AAAATGGTAG AAATATATGA TCCACCACAC ATCTTACAAC 54405 .......... .......... .......... .......... .......... .......... 502 TACTTTGACA GTGTTTCTTA GTTTCTCTTA TTTTGTTTCC TTGTGACATA AAATATATCT 54345 .......... .......... .......... .......... .......... .......... 502 TCTGTAGCAC ATATGCTACA AATCCCAGCT TGTATTCTAC AGTATAATGA GCAAAAATAA 54285 .......... .......... .......... .......... .......... .......... 502 TGGTATACCA TATGCTTTTT CATTCTATAT CTATTGTATA TATAACTTGT ATTACATATT 54225 .......... .......... .......... .......... .......... .......... 502 CGCTGCAATT GTTCTATGTT CTGAGTTGCA TCGTCATATT TAGACTTTGA GCTTTACATA 54165 .......... .......... .......... .......... .......... .......... 502 GAAAATGGTG TTTAGCTCAT CTCTACTATT CTTGTAGTTT CACAGGTATA TATAAATATA 54105 .......... .......... .......... .......... .......... .......... 502 TCTGGTCTTC TCCTTTTCCA TTTCTTTCAA GTTTCTTATG ATTACACACC TTGTCTTACC 54045 .......... .......... .......... .......... .......... .......... 502 CTAAAGCAAT ATTATCTAGG ATCCTGATTG TAGAGATCTT CTTTTTTATT GGTAGCTTTA 53985 .......... .......... .......... .......... .......... .......... 502 GAAAATCTTT TTGTTGGGGA AGTAGCAGAT GAATAATACT CCCTCCGTTT AAAAAAGGAT 53925 |||| |||| |||| | ||| ||||||| || .......... .......... .......... AAATAGTACT CCCTTCATTT AAAAAAGAAT 532 GGCCTAATTT GACTTGGAAC GGAGTTTAAG AAAAGAAAGA AGACTTTTTA ATCTTGTGGT 53865 | |||| ||| |||||||||| |||||||||| ||||| |||| |||||||||| || ||||||| GACCTAGTTT GACTTGGAAC GGAGTTTAAG AAAAG-AAGA AGACTTTTTA ATTTTGTGGT 591 TCTAAATTAA AGTTATGTCA AATGTACCAA A 53834 |||||||||| |||||||||| |||||||||| | TCTAAATTAA AGTTATGTCA AATGTACCAA A 622 hqPGS_C08SLm0119I05.1-_SGN-E376578- (53954 53834) ******************************************************************************** EST sequence 40 -strand 429 n (File: SGN-E393272-) 1 GAATATTGTA AAAAAGGTAA GCATCACTAT AGGATGCAAG ATCTTTCGTA CAACTAGATA 61 TATTAGAAAT ATTAGAATAC ACTAAGGTGA AAATTCTGAA AAGCTTCCCC AGCATAATAC 121 CAAGATAATG ATTCGGCAAC CATTTCAAGT TGGACAAGAA AAAAAGATCT CATAATTCTA 181 TGGTGTACAC TTTCACCATC TCATTGAGAA AACAAAACCA ACTCTAAATT TCCAAAATAG 241 TACTCCCTTC ATTTAAAAAA GAATGACCTA GTTTGACTTG GAACGGAGTT TAAGAAAAGA 301 AGAAGACTTT TTAATTTTGT GGTTCTAAAT TAAAGTTATG TCAAATGTAC CAAAATGTCG 361 TCTTAAACAT GTCACTTGGA AAGTTAAAAC AAAATGAAAG GAGTCATTCA TTTTTAAACA 421 AACTAAAAA Predicted gene structure (within gDNA segment 57837 to 52529): Exon 1 57056 57015 ( 42 n); cDNA 183 221 ( 39 n); score: 0.571 Intron 1 57014 54845 (2170 n); Pd: 0.843 (s: 0.57), Pa: 0.176 (s: 0) Exon 2 54844 54832 ( 13 n); cDNA 222 234 ( 13 n); score: 0.538 Intron 2 54831 53955 ( 877 n); Pd: 0.910 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 53954 53834 ( 121 n); cDNA 235 354 ( 120 n); score: 0.926 MATCH C08SLm0119I05.1- SGN-E393272- 0.926 176 0.410 C PGS_C08SLm0119I05.1-_SGN-E393272- (57056 57015,54844 54832,53954 53834) Alignment (genomic DNA sequence = upper lines): GTGTGCCACG TGAAACAAAA GATGCAGAAA ATTAGAGACA AGGTTTAAAA TAATCCCTCA 56997 |||| ||| | | || || ||||| | | | || | GTGTA-CACT TTCACCATCT CATTGAGAAA A-CAAAACCA A-........ .......... 221 TCTTTGGGTT AAGGCTTGAA GTCATCCTTC AATTTGTAAA TGGAGCATTA ACGGTCTCTC 56937 .......... .......... .......... .......... .......... .......... 221 GTGCTTGCAA TATTGGTGCA CTTTTGGTCT TCATTCAAAA GTGTTTTTCT TCTCACAATC 56877 .......... .......... .......... .......... .......... .......... 221 TCTCACGTGA AGTTATTATA TCTATTAAAA ATATATATAA TGATGATTAA AAATTTCATA 56817 .......... .......... .......... .......... .......... .......... 221 CATAAATTAT GAATAAAATC AATGTTAAAA AATAGATAGT TTTGAATAAG GACAAAAAAT 56757 .......... .......... .......... .......... .......... .......... 221 GTACAAATAT TGCAAAGACG AAGGATTATT AAAGCTTCAT GTGAAAACTC TAGATGACTT 56697 .......... .......... .......... .......... .......... .......... 221 TGACTCTTAA CCCAAAGATA TACTATTTTA GATCTTTTTG ATCATAATCT AAAAAGATAC 56637 .......... .......... .......... .......... .......... .......... 221 TTATGCATTT TTTCTTTTAT TCATGATATC TTAATATGTT GATCAATTTA TATTATATAT 56577 .......... .......... .......... .......... .......... .......... 221 ATATATATAT ATATATATAT ATATAAAATA TAAAAGGCAG AGAATAGTTT TAATAGCACC 56517 .......... .......... .......... .......... .......... .......... 221 TTCAAAAGAG AAAAGAAGTC GCAATTGACG GTTTTGTTTG AAGAAAAATG GTGTTAGGTG 56457 .......... .......... .......... .......... .......... .......... 221 AGTTGCTACA TCAATAGCTA TGAACACGTC TTCGTTATTC CTCTCCTCTT TTTTTTATTT 56397 .......... .......... .......... .......... .......... .......... 221 ATACATTTCT CTCCATCCAA TTAGCTTCCA TAAACCCTAT ATTTCTTTGA CTCTTCTCAA 56337 .......... .......... .......... .......... .......... .......... 221 TATTTTACTT TTTTAGCCAA CCCCTTTAAT TTTCTCACAA AAATTTCCAC AAACTATACT 56277 .......... .......... .......... .......... .......... .......... 221 TTTTTCTGCA TTTAATAGTA TTATTTTTCT TTCAAACCCA TAAAAAACTA GAATAAGATC 56217 .......... .......... .......... .......... .......... .......... 221 TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG AAACAGGGAC 56157 .......... .......... .......... .......... .......... .......... 221 GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA GTTTCACTTC 56097 .......... .......... .......... .......... .......... .......... 221 TAACTCTTCC ATGTAAGCTT TTATGGGTTT TCATTTTCTT GGAAATTCCT TTCTTTTTTT 56037 .......... .......... .......... .......... .......... .......... 221 CATATGGGTT GCTCTTAAAT TTTGTTATTG TCAATTATAT GTTTTTATAA GAATTCAGTT 55977 .......... .......... .......... .......... .......... .......... 221 CCTTTTTTCT TTGTTGTAAC GTTTGATTTG ATCAATTATA TGAATAACTG TTTGAAAAAG 55917 .......... .......... .......... .......... .......... .......... 221 TCAGAATCTT GATGAAAGGT TTAGGATGTT TTGGGTTTGG CTGGTGAATG AGGTCATTTG 55857 .......... .......... .......... .......... .......... .......... 221 TTATGCAGAA GTTGTTGGTT CTTTTATAAT CAAATACCAA CTTATGATAT GGGGAAAATG 55797 .......... .......... .......... .......... .......... .......... 221 CTTTGCGTAC ATTATTTAGA AAGTTACTCT ATAACTTTGT AATGACAATC TAATAATGGG 55737 .......... .......... .......... .......... .......... .......... 221 AGTGTATCAA GTATGATGAC TCGATAGATC TTGTGGAGAA AAGAAACTTT TTAGTGAGGA 55677 .......... .......... .......... .......... .......... .......... 221 GATGCACATA GATTTTTCAT TTCCATGCTG ATTTCAATGC CAAAATGATG CACTAAACTT 55617 .......... .......... .......... .......... .......... .......... 221 TTTAATGAGG AGATAGACAT AGATTTTTCA TTTCCATGCT AATTTCAATG CCGGAATGAT 55557 .......... .......... .......... .......... .......... .......... 221 GTACTGAATG AATCTTTATC CTGGCAGATG CTGCTCGCGG ACAAGGTTAA TGCCTCCTTT 55497 .......... .......... .......... .......... .......... .......... 221 CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA CAATTTTATC 55437 .......... .......... .......... .......... .......... .......... 221 TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC ATCGCCCAGT 55377 .......... .......... .......... .......... .......... .......... 221 GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA CATTTCCGGG 55317 .......... .......... .......... .......... .......... .......... 221 GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC TACTTTTGAA 55257 .......... .......... .......... .......... .......... .......... 221 TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT TATTTGCTGA 55197 .......... .......... .......... .......... .......... .......... 221 TCCTGTATGC TAACAATCAG TCTTAACTCA TTTTTTTTCC TAAGCTGGAG ATTTTGGGCA 55137 .......... .......... .......... .......... .......... .......... 221 ATTTCGTTCT TTGTTTGTGT TTATGCTAAT GGTATGAATT TCACATGGCA GGACATTATA 55077 .......... .......... .......... .......... .......... .......... 221 CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT ATCTGTTCTC 55017 .......... .......... .......... .......... .......... .......... 221 CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAG GTGGTTCTCC TTTACGAAAA 54957 .......... .......... .......... .......... .......... .......... 221 ATAACAGATG AGCAGGTATA GGAAAACCCC TTTTTATTTA TGTGCTCTGT GCTAAAAAAT 54897 .......... .......... .......... .......... .......... .......... 221 TCTTTCTACT TCATTATGCT GGTGTCATTT TCAACTTGTT AACCCTCTTA AGCTCATCAT 54837 ||| || .......... .......... .......... .......... .......... ..CTCTAAAT 229 TGCAGGCTAG TGTACTAAAA ATTGCACTAG AAACAAAGGA AGTACCAGCT AATGTCTATG 54777 | | TTCCA..... .......... .......... .......... .......... .......... 234 TTGCGATGAG GTATTGGCAC CCGTTCACCG AGGAAGCTGT TCACCAGGTA GGCTCAAAAT 54717 .......... .......... .......... .......... .......... .......... 234 GCATCCTCTT GGTTCTTCCA GTTGACATTT TTTTGTCTTG ATCTTTTGTT TGATCTTGTC 54657 .......... .......... .......... .......... .......... .......... 234 TGTGTCTTCT CTCATGTGCT CACGATAATC TCAACAAGTC ATTAGAACAC TAGTTTCATT 54597 .......... .......... .......... .......... .......... .......... 234 TATACTTTTC AAATAAGTCT AATCTGTTTT GAGAGCTTGA ACATGGGCAC AATTCACAGA 54537 .......... .......... .......... .......... .......... .......... 234 AGTACTAACT AACAAGCACA AATTGTAAAT CTTTCTGCTA AACAAAAATA AAGAATCAGT 54477 .......... .......... .......... .......... .......... .......... 234 AAAAAATCGA GTAATTCTGT AAGGTAGGAT AAAAAATGGT AGAAATATAT GATCCACCAC 54417 .......... .......... .......... .......... .......... .......... 234 ACATCTTACA ACTACTTTGA CAGTGTTTCT TAGTTTCTCT TATTTTGTTT CCTTGTGACA 54357 .......... .......... .......... .......... .......... .......... 234 TAAAATATAT CTTCTGTAGC ACATATGCTA CAAATCCCAG CTTGTATTCT ACAGTATAAT 54297 .......... .......... .......... .......... .......... .......... 234 GAGCAAAAAT AATGGTATAC CATATGCTTT TTCATTCTAT ATCTATTGTA TATATAACTT 54237 .......... .......... .......... .......... .......... .......... 234 GTATTACATA TTCGCTGCAA TTGTTCTATG TTCTGAGTTG CATCGTCATA TTTAGACTTT 54177 .......... .......... .......... .......... .......... .......... 234 GAGCTTTACA TAGAAAATGG TGTTTAGCTC ATCTCTACTA TTCTTGTAGT TTCACAGGTA 54117 .......... .......... .......... .......... .......... .......... 234 TATATAAATA TATCTGGTCT TCTCCTTTTC CATTTCTTTC AAGTTTCTTA TGATTACACA 54057 .......... .......... .......... .......... .......... .......... 234 CCTTGTCTTA CCCTAAAGCA ATATTATCTA GGATCCTGAT TGTAGAGATC TTCTTTTTTA 53997 .......... .......... .......... .......... .......... .......... 234 TTGGTAGCTT TAGAAAATCT TTTTGTTGGG GAAGTAGCAG ATGAATAATA CTCCCTCCGT 53937 |||| || |||||| | | .......... .......... .......... .......... ..AAATAGTA CTCCCTTCAT 252 TTAAAAAAGG ATGGCCTAAT TTGACTTGGA ACGGAGTTTA AGAAAAGAAA GAAGACTTTT 53877 ||||||||| ||| |||| | |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAAAGA ATGACCTAGT TTGACTTGGA ACGGAGTTTA AGAAAAGAA- GAAGACTTTT 311 TAATCTTGTG GTTCTAAATT AAAGTTATGT CAAATGTACC AAA 53834 |||| ||||| |||||||||| |||||||||| |||||||||| ||| TAATTTTGTG GTTCTAAATT AAAGTTATGT CAAATGTACC AAA 354 hqPGS_C08SLm0119I05.1-_SGN-E393272- (53954 53834) ******************************************************************************** EST sequence 52 -strand 525 n (File: SGN-E210228-) 1 GGCTCTAGAA GTTCTGATAA GAAAGTAAGT ATATATGATA CACACATGTG AAGGCAACAT 61 GCTGCAAGTT ACAAATCCAG AGATTTGATA ATTATGTGAA TATTATAAAA AAGGTAAGCA 121 TCACTATATG ATGCAAGATC TTTCGTACAA CTAGATATAT TAGAAATATT AGAATACACT 181 AAGGTGAAGA TTCTGAAAAG CTTCCCCAGC ATATTACCAA GATAATGATT CGGCAACCAT 241 TTCAAGTTGG ACAAGAAAAA AAGATCTCAT AATTGTATGG TGTACACTTT CACCATCTCA 301 TTGAGAAAAC AAAACCAACT CTAAATTTCC AAAATAGTAC TCCCTTCATT TAAAAAAGAA 361 TGACCTAGTT TGACTTGGAA CGGAGTTTAA GAAAAGAAGA AGACTTTTTA ATTGGGTGGT 421 TCTAAATTAA AGTTATGTCA AATGTACCAA AATGTCGTCT TAAACATGTC CCTTGCAAAG 481 TTAAAACAAA ATGAAAGGAG TCATTCTTTT TTAAACGAAC TAAAA Predicted gene structure (within gDNA segment 58207 to 52539): Exon 1 57056 57015 ( 42 n); cDNA 280 318 ( 39 n); score: 0.571 Intron 1 57014 54845 (2170 n); Pd: 0.843 (s: 0.57), Pa: 0.176 (s: 0) Exon 2 54844 54832 ( 13 n); cDNA 319 331 ( 13 n); score: 0.538 Intron 2 54831 53955 ( 877 n); Pd: 0.910 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 53954 53834 ( 121 n); cDNA 332 451 ( 120 n); score: 0.909 MATCH C08SLm0119I05.1- SGN-E210228- 0.909 176 0.335 C PGS_C08SLm0119I05.1-_SGN-E210228- (57056 57015,54844 54832,53954 53834) Alignment (genomic DNA sequence = upper lines): GTGTGCCACG TGAAACAAAA GATGCAGAAA ATTAGAGACA AGGTTTAAAA TAATCCCTCA 56997 |||| ||| | | || || ||||| | | | || | GTGTA-CACT TTCACCATCT CATTGAGAAA ACAAAA-CCA A-........ .......... 318 TCTTTGGGTT AAGGCTTGAA GTCATCCTTC AATTTGTAAA TGGAGCATTA ACGGTCTCTC 56937 .......... .......... .......... .......... .......... .......... 318 GTGCTTGCAA TATTGGTGCA CTTTTGGTCT TCATTCAAAA GTGTTTTTCT TCTCACAATC 56877 .......... .......... .......... .......... .......... .......... 318 TCTCACGTGA AGTTATTATA TCTATTAAAA ATATATATAA TGATGATTAA AAATTTCATA 56817 .......... .......... .......... .......... .......... .......... 318 CATAAATTAT GAATAAAATC AATGTTAAAA AATAGATAGT TTTGAATAAG GACAAAAAAT 56757 .......... .......... .......... .......... .......... .......... 318 GTACAAATAT TGCAAAGACG AAGGATTATT AAAGCTTCAT GTGAAAACTC TAGATGACTT 56697 .......... .......... .......... .......... .......... .......... 318 TGACTCTTAA CCCAAAGATA TACTATTTTA GATCTTTTTG ATCATAATCT AAAAAGATAC 56637 .......... .......... .......... .......... .......... .......... 318 TTATGCATTT TTTCTTTTAT TCATGATATC TTAATATGTT GATCAATTTA TATTATATAT 56577 .......... .......... .......... .......... .......... .......... 318 ATATATATAT ATATATATAT ATATAAAATA TAAAAGGCAG AGAATAGTTT TAATAGCACC 56517 .......... .......... .......... .......... .......... .......... 318 TTCAAAAGAG AAAAGAAGTC GCAATTGACG GTTTTGTTTG AAGAAAAATG GTGTTAGGTG 56457 .......... .......... .......... .......... .......... .......... 318 AGTTGCTACA TCAATAGCTA TGAACACGTC TTCGTTATTC CTCTCCTCTT TTTTTTATTT 56397 .......... .......... .......... .......... .......... .......... 318 ATACATTTCT CTCCATCCAA TTAGCTTCCA TAAACCCTAT ATTTCTTTGA CTCTTCTCAA 56337 .......... .......... .......... .......... .......... .......... 318 TATTTTACTT TTTTAGCCAA CCCCTTTAAT TTTCTCACAA AAATTTCCAC AAACTATACT 56277 .......... .......... .......... .......... .......... .......... 318 TTTTTCTGCA TTTAATAGTA TTATTTTTCT TTCAAACCCA TAAAAAACTA GAATAAGATC 56217 .......... .......... .......... .......... .......... .......... 318 TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG AAACAGGGAC 56157 .......... .......... .......... .......... .......... .......... 318 GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA GTTTCACTTC 56097 .......... .......... .......... .......... .......... .......... 318 TAACTCTTCC ATGTAAGCTT TTATGGGTTT TCATTTTCTT GGAAATTCCT TTCTTTTTTT 56037 .......... .......... .......... .......... .......... .......... 318 CATATGGGTT GCTCTTAAAT TTTGTTATTG TCAATTATAT GTTTTTATAA GAATTCAGTT 55977 .......... .......... .......... .......... .......... .......... 318 CCTTTTTTCT TTGTTGTAAC GTTTGATTTG ATCAATTATA TGAATAACTG TTTGAAAAAG 55917 .......... .......... .......... .......... .......... .......... 318 TCAGAATCTT GATGAAAGGT TTAGGATGTT TTGGGTTTGG CTGGTGAATG AGGTCATTTG 55857 .......... .......... .......... .......... .......... .......... 318 TTATGCAGAA GTTGTTGGTT CTTTTATAAT CAAATACCAA CTTATGATAT GGGGAAAATG 55797 .......... .......... .......... .......... .......... .......... 318 CTTTGCGTAC ATTATTTAGA AAGTTACTCT ATAACTTTGT AATGACAATC TAATAATGGG 55737 .......... .......... .......... .......... .......... .......... 318 AGTGTATCAA GTATGATGAC TCGATAGATC TTGTGGAGAA AAGAAACTTT TTAGTGAGGA 55677 .......... .......... .......... .......... .......... .......... 318 GATGCACATA GATTTTTCAT TTCCATGCTG ATTTCAATGC CAAAATGATG CACTAAACTT 55617 .......... .......... .......... .......... .......... .......... 318 TTTAATGAGG AGATAGACAT AGATTTTTCA TTTCCATGCT AATTTCAATG CCGGAATGAT 55557 .......... .......... .......... .......... .......... .......... 318 GTACTGAATG AATCTTTATC CTGGCAGATG CTGCTCGCGG ACAAGGTTAA TGCCTCCTTT 55497 .......... .......... .......... .......... .......... .......... 318 CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA CAATTTTATC 55437 .......... .......... .......... .......... .......... .......... 318 TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC ATCGCCCAGT 55377 .......... .......... .......... .......... .......... .......... 318 GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA CATTTCCGGG 55317 .......... .......... .......... .......... .......... .......... 318 GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC TACTTTTGAA 55257 .......... .......... .......... .......... .......... .......... 318 TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT TATTTGCTGA 55197 .......... .......... .......... .......... .......... .......... 318 TCCTGTATGC TAACAATCAG TCTTAACTCA TTTTTTTTCC TAAGCTGGAG ATTTTGGGCA 55137 .......... .......... .......... .......... .......... .......... 318 ATTTCGTTCT TTGTTTGTGT TTATGCTAAT GGTATGAATT TCACATGGCA GGACATTATA 55077 .......... .......... .......... .......... .......... .......... 318 CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT ATCTGTTCTC 55017 .......... .......... .......... .......... .......... .......... 318 CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAG GTGGTTCTCC TTTACGAAAA 54957 .......... .......... .......... .......... .......... .......... 318 ATAACAGATG AGCAGGTATA GGAAAACCCC TTTTTATTTA TGTGCTCTGT GCTAAAAAAT 54897 .......... .......... .......... .......... .......... .......... 318 TCTTTCTACT TCATTATGCT GGTGTCATTT TCAACTTGTT AACCCTCTTA AGCTCATCAT 54837 ||| || .......... .......... .......... .......... .......... ..CTCTAAAT 326 TGCAGGCTAG TGTACTAAAA ATTGCACTAG AAACAAAGGA AGTACCAGCT AATGTCTATG 54777 | | TTCCA..... .......... .......... .......... .......... .......... 331 TTGCGATGAG GTATTGGCAC CCGTTCACCG AGGAAGCTGT TCACCAGGTA GGCTCAAAAT 54717 .......... .......... .......... .......... .......... .......... 331 GCATCCTCTT GGTTCTTCCA GTTGACATTT TTTTGTCTTG ATCTTTTGTT TGATCTTGTC 54657 .......... .......... .......... .......... .......... .......... 331 TGTGTCTTCT CTCATGTGCT CACGATAATC TCAACAAGTC ATTAGAACAC TAGTTTCATT 54597 .......... .......... .......... .......... .......... .......... 331 TATACTTTTC AAATAAGTCT AATCTGTTTT GAGAGCTTGA ACATGGGCAC AATTCACAGA 54537 .......... .......... .......... .......... .......... .......... 331 AGTACTAACT AACAAGCACA AATTGTAAAT CTTTCTGCTA AACAAAAATA AAGAATCAGT 54477 .......... .......... .......... .......... .......... .......... 331 AAAAAATCGA GTAATTCTGT AAGGTAGGAT AAAAAATGGT AGAAATATAT GATCCACCAC 54417 .......... .......... .......... .......... .......... .......... 331 ACATCTTACA ACTACTTTGA CAGTGTTTCT TAGTTTCTCT TATTTTGTTT CCTTGTGACA 54357 .......... .......... .......... .......... .......... .......... 331 TAAAATATAT CTTCTGTAGC ACATATGCTA CAAATCCCAG CTTGTATTCT ACAGTATAAT 54297 .......... .......... .......... .......... .......... .......... 331 GAGCAAAAAT AATGGTATAC CATATGCTTT TTCATTCTAT ATCTATTGTA TATATAACTT 54237 .......... .......... .......... .......... .......... .......... 331 GTATTACATA TTCGCTGCAA TTGTTCTATG TTCTGAGTTG CATCGTCATA TTTAGACTTT 54177 .......... .......... .......... .......... .......... .......... 331 GAGCTTTACA TAGAAAATGG TGTTTAGCTC ATCTCTACTA TTCTTGTAGT TTCACAGGTA 54117 .......... .......... .......... .......... .......... .......... 331 TATATAAATA TATCTGGTCT TCTCCTTTTC CATTTCTTTC AAGTTTCTTA TGATTACACA 54057 .......... .......... .......... .......... .......... .......... 331 CCTTGTCTTA CCCTAAAGCA ATATTATCTA GGATCCTGAT TGTAGAGATC TTCTTTTTTA 53997 .......... .......... .......... .......... .......... .......... 331 TTGGTAGCTT TAGAAAATCT TTTTGTTGGG GAAGTAGCAG ATGAATAATA CTCCCTCCGT 53937 |||| || |||||| | | .......... .......... .......... .......... ..AAATAGTA CTCCCTTCAT 349 TTAAAAAAGG ATGGCCTAAT TTGACTTGGA ACGGAGTTTA AGAAAAGAAA GAAGACTTTT 53877 ||||||||| ||| |||| | |||||||||| |||||||||| ||||||| || |||||||||| TTAAAAAAGA ATGACCTAGT TTGACTTGGA ACGGAGTTTA AGAAAAG-AA GAAGACTTTT 408 TAATCTTGTG GTTCTAAATT AAAGTTATGT CAAATGTACC AAA 53834 |||| ||| |||||||||| |||||||||| |||||||||| ||| TAATTGGGTG GTTCTAAATT AAAGTTATGT CAAATGTACC AAA 451 hqPGS_C08SLm0119I05.1-_SGN-E210228- (53954 53834) ******************************************************************************** EST sequence 70 +strand 823 n (File: SGN-E538500+) 1 CTCTTCTCAA TATTTTACTT TTTTAGCCAA CCCCTTTAAT TTTCTCACAA AAATTTCCAC 61 AAACTATACT TTTTTCTGCA TTTAATAGTA TTATTTTTCT TTCAAACCCA TAAAAAACTA 121 GAATAAGATC TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG 181 AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 241 GTTTCACTTC TAACTCTTCC ATATGCTGCT CGCGGACAAG GTTAATGCCT CCTTTCCATT 301 CCTCACATGG TGGGCGAGAA ATGAATTCTG ATGAGCGGGA GATTACAATT TTATCTTCTG 361 AACTCACTCT CAAAAAAAGC AGTGTAGTTG AGGGATTGTC TTTACATCGC CCAGTGCACA 421 AGAGAGATGT AGTTGGCAAG ACGTTCTGCT CTGTTGGATT GTCTACATTT CCGGGGAGCA 481 TCGTTGAGTC TTCTTCCCAG ACAACTGAAG AAAAGATCGG AGTGCTACTT TTGAATCTTG 541 GAGGGCCAGA CACACTTCAT GATGTCCAGC CTTTTCTGTT CAACTTATTT GCTGATCCTG 601 ACATTATACG TCTACCCAGA TTGTTCAGAT TTCTCCAGCG CCCATTGGCA CAACTTATAT 661 CTGTTCTCCG AGCTCCGAAA AGCAAGGAAG GATATGCTGC AATTGGAGGT GGTTCTCCTT 721 TACGAAAAAT AACAGATGAG CAGGCTAGTG TACTAAAAAT TGCACTAGAA ACAAAGGGAG 781 TACCAGCTAA TGTCTATGTT GCGATGAGGT ATTGGCACCC GTT Predicted gene structure (within gDNA segment 56946 to 54142): Exon 1 56346 56085 ( 262 n); cDNA 1 262 ( 262 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55193 ( 337 n); cDNA 263 599 ( 337 n); score: 1.000 Intron 2 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 55085 54942 ( 144 n); cDNA 600 743 ( 144 n); score: 1.000 Intron 3 54941 54832 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 0.98) Exon 4 54831 54752 ( 80 n); cDNA 744 823 ( 80 n); score: 0.988 MATCH C08SLm0119I05.1- SGN-E538500+ 0.999 823 1.000 C PGS_C08SLm0119I05.1-_SGN-E538500+ (56346 56085,55529 55193,55085 54942,54831 54752) Alignment (genomic DNA sequence = upper lines): CTCTTCTCAA TATTTTACTT TTTTAGCCAA CCCCTTTAAT TTTCTCACAA AAATTTCCAC 56287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTCTCAA TATTTTACTT TTTTAGCCAA CCCCTTTAAT TTTCTCACAA AAATTTCCAC 60 AAACTATACT TTTTTCTGCA TTTAATAGTA TTATTTTTCT TTCAAACCCA TAAAAAACTA 56227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATACT TTTTTCTGCA TTTAATAGTA TTATTTTTCT TTCAAACCCA TAAAAAACTA 120 GAATAAGATC TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG 56167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATAAGATC TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG 180 AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 56107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 240 GTTTCACTTC TAACTCTTCC ATGTAAGCTT TTATGGGTTT TCATTTTCTT GGAAATTCCT 56047 |||||||||| |||||||||| || GTTTCACTTC TAACTCTTCC AT........ .......... .......... .......... 262 TTCTTTTTTT CATATGGGTT GCTCTTAAAT TTTGTTATTG TCAATTATAT GTTTTTATAA 55987 .......... .......... .......... .......... .......... .......... 262 GAATTCAGTT CCTTTTTTCT TTGTTGTAAC GTTTGATTTG ATCAATTATA TGAATAACTG 55927 .......... .......... .......... .......... .......... .......... 262 TTTGAAAAAG TCAGAATCTT GATGAAAGGT TTAGGATGTT TTGGGTTTGG CTGGTGAATG 55867 .......... .......... .......... .......... .......... .......... 262 AGGTCATTTG TTATGCAGAA GTTGTTGGTT CTTTTATAAT CAAATACCAA CTTATGATAT 55807 .......... .......... .......... .......... .......... .......... 262 GGGGAAAATG CTTTGCGTAC ATTATTTAGA AAGTTACTCT ATAACTTTGT AATGACAATC 55747 .......... .......... .......... .......... .......... .......... 262 TAATAATGGG AGTGTATCAA GTATGATGAC TCGATAGATC TTGTGGAGAA AAGAAACTTT 55687 .......... .......... .......... .......... .......... .......... 262 TTAGTGAGGA GATGCACATA GATTTTTCAT TTCCATGCTG ATTTCAATGC CAAAATGATG 55627 .......... .......... .......... .......... .......... .......... 262 CACTAAACTT TTTAATGAGG AGATAGACAT AGATTTTTCA TTTCCATGCT AATTTCAATG 55567 .......... .......... .......... .......... .......... .......... 262 CCGGAATGAT GTACTGAATG AATCTTTATC CTGGCAGATG CTGCTCGCGG ACAAGGTTAA 55507 ||| |||||||||| |||||||||| .......... .......... .......... .......ATG CTGCTCGCGG ACAAGGTTAA 285 TGCCTCCTTT CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA 55447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCCTTT CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA 345 CAATTTTATC TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC 55387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTTATC TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC 405 ATCGCCCAGT GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA 55327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCCAGT GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA 465 CATTTCCGGG GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC 55267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCCGGG GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC 525 TACTTTTGAA TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT 55207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTTGAA TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT 585 TATTTGCTGA TCCTGTATGC TAACAATCAG TCTTAACTCA TTTTTTTTCC TAAGCTGGAG 55147 |||||||||| |||| TATTTGCTGA TCCT...... .......... .......... .......... .......... 599 ATTTTGGGCA ATTTCGTTCT TTGTTTGTGT TTATGCTAAT GGTATGAATT TCACATGGCA 55087 .......... .......... .......... .......... .......... .......... 599 GGACATTATA CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT 55027 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GACATTATA CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT 658 ATCTGTTCTC CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAG GTGGTTCTCC 54967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGTTCTC CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAG GTGGTTCTCC 718 TTTACGAAAA ATAACAGATG AGCAGGTATA GGAAAACCCC TTTTTATTTA TGTGCTCTGT 54907 |||||||||| |||||||||| ||||| TTTACGAAAA ATAACAGATG AGCAG..... .......... .......... .......... 743 GCTAAAAAAT TCTTTCTACT TCATTATGCT GGTGTCATTT TCAACTTGTT AACCCTCTTA 54847 .......... .......... .......... .......... .......... .......... 743 AGCTCATCAT TGCAGGCTAG TGTACTAAAA ATTGCACTAG AAACAAAGGA AGTACCAGCT 54787 ||||| |||||||||| |||||||||| ||||||||| |||||||||| .......... .....GCTAG TGTACTAAAA ATTGCACTAG AAACAAAGGG AGTACCAGCT 788 AATGTCTATG TTGCGATGAG GTATTGGCAC CCGTT 54752 |||||||||| |||||||||| |||||||||| ||||| AATGTCTATG TTGCGATGAG GTATTGGCAC CCGTT 823 hqPGS_C08SLm0119I05.1-_SGN-E538500+ (56346 56085,55529 55193,55085 54942,54831 54752) ******************************************************************************** EST sequence 86 +strand 692 n (File: SGN-E398475+) 1 CTCTTTTTGG AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA 61 CGATCTCTCG ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT 121 CTAACTCTTC CATATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT TCCTCACATG 181 GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT GAACTCACTC 241 TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACATCG CCCAGTGCAC AAGAGAGATG 301 TAGTTGGCAA GACGTTCTGC TCTGTTGGAT TGTCTACATT TCCGGGGAGC ATCGTTGAGT 361 CTTCTTCCCA GACAACTGAA GAAAAGATCG GAGTGCTACT TTTGAATCTT GGAGGGCCAG 421 ACACACTTCA TGATGTCCAG CCTTTTCTGT TCAACTTATT TGCTGATCCT GACATTATAC 481 GTCTACCCAG ATTGTTCAGA TTTCTCCAGC GCCCATTGGC ACAACTTATA TCTGTTCTCC 541 GAGCTCCGAA AAGCAAGGAA GGATATGCTG CAATTGGAGG TGGTTCTCCT TTACGAAAAA 601 TAACAGATGA GCAGGCTAGT GTACTAAAAA TTGCACTAGA AACAAAGGAA GTACCAGCTA 661 ATGTCTATGT TGCGATGAGG TATTGGCACC CG Predicted gene structure (within gDNA segment 56817 to 54144): Exon 1 56217 56085 ( 133 n); cDNA 1 133 ( 133 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55193 ( 337 n); cDNA 134 470 ( 337 n); score: 1.000 Intron 2 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 55085 54942 ( 144 n); cDNA 471 614 ( 144 n); score: 1.000 Intron 3 54941 54832 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 54831 54754 ( 78 n); cDNA 615 692 ( 78 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E398475+ 1.000 692 1.000 C PGS_C08SLm0119I05.1-_SGN-E398475+ (56217 56085,55529 55193,55085 54942,54831 54754) Alignment (genomic DNA sequence = upper lines): CTCTTTTTGG AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA 56158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTTTGG AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA 60 CGATCTCTCG ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT 56098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCTCG ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT 120 CTAACTCTTC CATGTAAGCT TTTATGGGTT TTCATTTTCT TGGAAATTCC TTTCTTTTTT 56038 |||||||||| ||| CTAACTCTTC CAT....... .......... .......... .......... .......... 133 TCATATGGGT TGCTCTTAAA TTTTGTTATT GTCAATTATA TGTTTTTATA AGAATTCAGT 55978 .......... .......... .......... .......... .......... .......... 133 TCCTTTTTTC TTTGTTGTAA CGTTTGATTT GATCAATTAT ATGAATAACT GTTTGAAAAA 55918 .......... .......... .......... .......... .......... .......... 133 GTCAGAATCT TGATGAAAGG TTTAGGATGT TTTGGGTTTG GCTGGTGAAT GAGGTCATTT 55858 .......... .......... .......... .......... .......... .......... 133 GTTATGCAGA AGTTGTTGGT TCTTTTATAA TCAAATACCA ACTTATGATA TGGGGAAAAT 55798 .......... .......... .......... .......... .......... .......... 133 GCTTTGCGTA CATTATTTAG AAAGTTACTC TATAACTTTG TAATGACAAT CTAATAATGG 55738 .......... .......... .......... .......... .......... .......... 133 GAGTGTATCA AGTATGATGA CTCGATAGAT CTTGTGGAGA AAAGAAACTT TTTAGTGAGG 55678 .......... .......... .......... .......... .......... .......... 133 AGATGCACAT AGATTTTTCA TTTCCATGCT GATTTCAATG CCAAAATGAT GCACTAAACT 55618 .......... .......... .......... .......... .......... .......... 133 TTTTAATGAG GAGATAGACA TAGATTTTTC ATTTCCATGC TAATTTCAAT GCCGGAATGA 55558 .......... .......... .......... .......... .......... .......... 133 TGTACTGAAT GAATCTTTAT CCTGGCAGAT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT 55498 || |||||||||| |||||||||| |||||||||| .......... .......... ........AT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT 165 TCCATTCCTC ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT 55438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATTCCTC ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT 225 CTTCTGAACT CACTCTCAAA AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG 55378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGAACT CACTCTCAAA AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG 285 TGCACAAGAG AGATGTAGTT GGCAAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG 55318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACAAGAG AGATGTAGTT GGCAAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG 345 GGAGCATCGT TGAGTCTTCT TCCCAGACAA CTGAAGAAAA GATCGGAGTG CTACTTTTGA 55258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCATCGT TGAGTCTTCT TCCCAGACAA CTGAAGAAAA GATCGGAGTG CTACTTTTGA 405 ATCTTGGAGG GCCAGACACA CTTCATGATG TCCAGCCTTT TCTGTTCAAC TTATTTGCTG 55198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGGAGG GCCAGACACA CTTCATGATG TCCAGCCTTT TCTGTTCAAC TTATTTGCTG 465 ATCCTGTATG CTAACAATCA GTCTTAACTC ATTTTTTTTC CTAAGCTGGA GATTTTGGGC 55138 ||||| ATCCT..... .......... .......... .......... .......... .......... 470 AATTTCGTTC TTTGTTTGTG TTTATGCTAA TGGTATGAAT TTCACATGGC AGGACATTAT 55078 |||||||| .......... .......... .......... .......... .......... ..GACATTAT 478 ACGTCTACCC AGATTGTTCA GATTTCTCCA GCGCCCATTG GCACAACTTA TATCTGTTCT 55018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTCTACCC AGATTGTTCA GATTTCTCCA GCGCCCATTG GCACAACTTA TATCTGTTCT 538 CCGAGCTCCG AAAAGCAAGG AAGGATATGC TGCAATTGGA GGTGGTTCTC CTTTACGAAA 54958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGCTCCG AAAAGCAAGG AAGGATATGC TGCAATTGGA GGTGGTTCTC CTTTACGAAA 598 AATAACAGAT GAGCAGGTAT AGGAAAACCC CTTTTTATTT ATGTGCTCTG TGCTAAAAAA 54898 |||||||||| |||||| AATAACAGAT GAGCAG.... .......... .......... .......... .......... 614 TTCTTTCTAC TTCATTATGC TGGTGTCATT TTCAACTTGT TAACCCTCTT AAGCTCATCA 54838 .......... .......... .......... .......... .......... .......... 614 TTGCAGGCTA GTGTACTAAA AATTGCACTA GAAACAAAGG AAGTACCAGC TAATGTCTAT 54778 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GCTA GTGTACTAAA AATTGCACTA GAAACAAAGG AAGTACCAGC TAATGTCTAT 668 GTTGCGATGA GGTATTGGCA CCCG 54754 |||||||||| |||||||||| |||| GTTGCGATGA GGTATTGGCA CCCG 692 hqPGS_C08SLm0119I05.1-_SGN-E398475+ (56217 56085,55529 55193,55085 54942,54831 54754) ******************************************************************************** EST sequence 78 +strand 558 n (File: SGN-E214484+) 1 AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 61 GTTTCACTTC TAACTCTTCC ATATGCTGCT CGCGGACAAG GTTAATGCCT CCTTTCCATT 121 CCTCACATGG TGGGCGAGAA ATGAATTCTG ATGAGCGGGA GATTACAATT TTATCTTCTG 181 AACTCACTCT CAAAAAAAGC AGTGTAGTTG AGGGATTGTC TTTACATCGC CCAGTGCACA 241 AGAGAGATGT AGTTGGCAAG ACGTTCTGCT CTGTTGGATT GTCTACATTT CCGGGGAGCA 301 TCGTTGAGTC TTCTTCCCAG ACAACTGAAG AAAAGATCGG AGTGCTACTT TTGAATCTTG 361 GAGGGCCAGA CACACTTCAT GATGTCCAGC CTTTTCTGTT CAACTTATTT GCTGATCCTG 421 ACATTATACG TCTACCCAGA TTGTTCAGAT TTCTCCAGCG CCCATTGGCA CAACTTATAT 481 CTGTTCTCCG AGCTCCGAAA AGCAAGGAAG GATATGCTGC AATTGGAAGT GGTTCTCCTT 541 TACGAAAAAT AACAGATG Predicted gene structure (within gDNA segment 56766 to 54337): Exon 1 56166 56085 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55193 ( 337 n); cDNA 83 419 ( 337 n); score: 1.000 Intron 2 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 55085 54947 ( 139 n); cDNA 420 558 ( 139 n); score: 0.993 MATCH C08SLm0119I05.1- SGN-E214484+ 0.998 558 1.000 C PGS_C08SLm0119I05.1-_SGN-E214484+ (56166 56085,55529 55193,55085 54947) Alignment (genomic DNA sequence = upper lines): AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 56107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGGGAC GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA 60 GTTTCACTTC TAACTCTTCC ATGTAAGCTT TTATGGGTTT TCATTTTCTT GGAAATTCCT 56047 |||||||||| |||||||||| || GTTTCACTTC TAACTCTTCC AT........ .......... .......... .......... 82 TTCTTTTTTT CATATGGGTT GCTCTTAAAT TTTGTTATTG TCAATTATAT GTTTTTATAA 55987 .......... .......... .......... .......... .......... .......... 82 GAATTCAGTT CCTTTTTTCT TTGTTGTAAC GTTTGATTTG ATCAATTATA TGAATAACTG 55927 .......... .......... .......... .......... .......... .......... 82 TTTGAAAAAG TCAGAATCTT GATGAAAGGT TTAGGATGTT TTGGGTTTGG CTGGTGAATG 55867 .......... .......... .......... .......... .......... .......... 82 AGGTCATTTG TTATGCAGAA GTTGTTGGTT CTTTTATAAT CAAATACCAA CTTATGATAT 55807 .......... .......... .......... .......... .......... .......... 82 GGGGAAAATG CTTTGCGTAC ATTATTTAGA AAGTTACTCT ATAACTTTGT AATGACAATC 55747 .......... .......... .......... .......... .......... .......... 82 TAATAATGGG AGTGTATCAA GTATGATGAC TCGATAGATC TTGTGGAGAA AAGAAACTTT 55687 .......... .......... .......... .......... .......... .......... 82 TTAGTGAGGA GATGCACATA GATTTTTCAT TTCCATGCTG ATTTCAATGC CAAAATGATG 55627 .......... .......... .......... .......... .......... .......... 82 CACTAAACTT TTTAATGAGG AGATAGACAT AGATTTTTCA TTTCCATGCT AATTTCAATG 55567 .......... .......... .......... .......... .......... .......... 82 CCGGAATGAT GTACTGAATG AATCTTTATC CTGGCAGATG CTGCTCGCGG ACAAGGTTAA 55507 ||| |||||||||| |||||||||| .......... .......... .......... .......ATG CTGCTCGCGG ACAAGGTTAA 105 TGCCTCCTTT CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA 55447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCCTTT CCATTCCTCA CATGGTGGGC GAGAAATGAA TTCTGATGAG CGGGAGATTA 165 CAATTTTATC TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC 55387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTTATC TTCTGAACTC ACTCTCAAAA AAAGCAGTGT AGTTGAGGGA TTGTCTTTAC 225 ATCGCCCAGT GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA 55327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCCAGT GCACAAGAGA GATGTAGTTG GCAAGACGTT CTGCTCTGTT GGATTGTCTA 285 CATTTCCGGG GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC 55267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCCGGG GAGCATCGTT GAGTCTTCTT CCCAGACAAC TGAAGAAAAG ATCGGAGTGC 345 TACTTTTGAA TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT 55207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTTGAA TCTTGGAGGG CCAGACACAC TTCATGATGT CCAGCCTTTT CTGTTCAACT 405 TATTTGCTGA TCCTGTATGC TAACAATCAG TCTTAACTCA TTTTTTTTCC TAAGCTGGAG 55147 |||||||||| |||| TATTTGCTGA TCCT...... .......... .......... .......... .......... 419 ATTTTGGGCA ATTTCGTTCT TTGTTTGTGT TTATGCTAAT GGTATGAATT TCACATGGCA 55087 .......... .......... .......... .......... .......... .......... 419 GGACATTATA CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT 55027 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GACATTATA CGTCTACCCA GATTGTTCAG ATTTCTCCAG CGCCCATTGG CACAACTTAT 478 ATCTGTTCTC CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAG GTGGTTCTCC 54967 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATCTGTTCTC CGAGCTCCGA AAAGCAAGGA AGGATATGCT GCAATTGGAA GTGGTTCTCC 538 TTTACGAAAA ATAACAGATG 54947 |||||||||| |||||||||| TTTACGAAAA ATAACAGATG 558 hqPGS_C08SLm0119I05.1-_SGN-E214484+ (56166 56085,55529 55193,55085 54947) ******************************************************************************** EST sequence 77 +strand 619 n (File: SGN-E213687+) 1 ATTTAATAGT ATTATTTTTC TTTCAAACCC ATAAAAAACT AGAATAAGAT CTCTTTTTGG 61 AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA CGATCTCTCG 121 ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT CTAACTCTTC 181 CATATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT TCCTCACATG GTGGGCGAGA 241 AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT GAACTCACTC TCAAAAAAAG 301 CAGTGTAGTT GAGGGATTGT CTTTACATCG CCCAGTGCAC AAGAGAGATG TAGTTGGCAA 361 GACGTTCTGC TCTGTTGGAT TGTCTACATT TCCGGGGAGC ATCGTTGAGT CTTCTTCCCA 421 GACAACTGAA GAAAAGATCG GAGTGCTACT TTTGAATCTT GGAGGGCCAG ACACACTTCA 481 TGATGTCCAG CCTTTTCTGT TCAACTTATT TGCTGATCCT GACATTATAC GTCTACCCAG 541 ATTGTTCAGA TTTCTCCAGC GCCCCATTGG CACAACTTAT ATCTGTTCTC CGAGCTCCGA 601 AAAGCAAGGA AGGATATGC Predicted gene structure (within gDNA segment 56867 to 54378): Exon 1 56267 56085 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55193 ( 337 n); cDNA 184 520 ( 337 n); score: 1.000 Intron 2 55192 55086 ( 107 n); Pd: 0.980 (s: 1.00), Pa: 0.996 (s: 0.95) Exon 3 55085 54988 ( 98 n); cDNA 521 619 ( 99 n); score: 0.974 MATCH C08SLm0119I05.1- SGN-E213687+ 0.996 618 0.998 C PGS_C08SLm0119I05.1-_SGN-E213687+ (56267 56085,55529 55193,55085 54988) Alignment (genomic DNA sequence = upper lines): ATTTAATAGT ATTATTTTTC TTTCAAACCC ATAAAAAACT AGAATAAGAT CTCTTTTTGG 56208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAATAGT ATTATTTTTC TTTCAAACCC ATAAAAAACT AGAATAAGAT CTCTTTTTGG 60 AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA CGATCTCTCG 56148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTTGA TAGAAGAAAA TCATCACATA GTAGATCATG GAAACAGGGA CGATCTCTCG 120 ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT CTAACTCTTC 56088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCTTAAA CCGACTAAGG TTCCAAGTTC TAGTTTTTCC AGTTTCACTT CTAACTCTTC 180 CATGTAAGCT TTTATGGGTT TTCATTTTCT TGGAAATTCC TTTCTTTTTT TCATATGGGT 56028 ||| CAT....... .......... .......... .......... .......... .......... 183 TGCTCTTAAA TTTTGTTATT GTCAATTATA TGTTTTTATA AGAATTCAGT TCCTTTTTTC 55968 .......... .......... .......... .......... .......... .......... 183 TTTGTTGTAA CGTTTGATTT GATCAATTAT ATGAATAACT GTTTGAAAAA GTCAGAATCT 55908 .......... .......... .......... .......... .......... .......... 183 TGATGAAAGG TTTAGGATGT TTTGGGTTTG GCTGGTGAAT GAGGTCATTT GTTATGCAGA 55848 .......... .......... .......... .......... .......... .......... 183 AGTTGTTGGT TCTTTTATAA TCAAATACCA ACTTATGATA TGGGGAAAAT GCTTTGCGTA 55788 .......... .......... .......... .......... .......... .......... 183 CATTATTTAG AAAGTTACTC TATAACTTTG TAATGACAAT CTAATAATGG GAGTGTATCA 55728 .......... .......... .......... .......... .......... .......... 183 AGTATGATGA CTCGATAGAT CTTGTGGAGA AAAGAAACTT TTTAGTGAGG AGATGCACAT 55668 .......... .......... .......... .......... .......... .......... 183 AGATTTTTCA TTTCCATGCT GATTTCAATG CCAAAATGAT GCACTAAACT TTTTAATGAG 55608 .......... .......... .......... .......... .......... .......... 183 GAGATAGACA TAGATTTTTC ATTTCCATGC TAATTTCAAT GCCGGAATGA TGTACTGAAT 55548 .......... .......... .......... .......... .......... .......... 183 GAATCTTTAT CCTGGCAGAT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT TCCATTCCTC 55488 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT TCCATTCCTC 225 ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT CTTCTGAACT 55428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT CTTCTGAACT 285 CACTCTCAAA AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG TGCACAAGAG 55368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCTCAAA AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG TGCACAAGAG 345 AGATGTAGTT GGCAAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG GGAGCATCGT 55308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGTAGTT GGCAAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG GGAGCATCGT 405 TGAGTCTTCT TCCCAGACAA CTGAAGAAAA GATCGGAGTG CTACTTTTGA ATCTTGGAGG 55248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTCTTCT TCCCAGACAA CTGAAGAAAA GATCGGAGTG CTACTTTTGA ATCTTGGAGG 465 GCCAGACACA CTTCATGATG TCCAGCCTTT TCTGTTCAAC TTATTTGCTG ATCCTGTATG 55188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCCAGACACA CTTCATGATG TCCAGCCTTT TCTGTTCAAC TTATTTGCTG ATCCT..... 520 CTAACAATCA GTCTTAACTC ATTTTTTTTC CTAAGCTGGA GATTTTGGGC AATTTCGTTC 55128 .......... .......... .......... .......... .......... .......... 520 TTTGTTTGTG TTTATGCTAA TGGTATGAAT TTCACATGGC AGGACATTAT ACGTCTACCC 55068 |||||||| |||||||||| .......... .......... .......... .......... ..GACATTAT ACGTCTACCC 538 AGATTGTTCA GATTTCTCCA GCG-CCCATT GGCACAACTT ATATCTGTTC TCCGAGCTCC 55009 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGATTGTTCA GATTTCTCCA GCGCCCCATT GGCACAACTT ATATCTGTTC TCCGAGCTCC 598 GAAAAGCAAG GAAGGATATG C 54988 |||||||||| |||||||||| | GAAAAGCAAG GAAGGATATG C 619 hqPGS_C08SLm0119I05.1-_SGN-E213687+ (56267 56085,55529 55193,55085 54988) ******************************************************************************** EST sequence 76 +strand 548 n (File: SGN-E269472+) 1 AATCGCTCTC TCGCTCGCTC ATTTGATTCC CGGCACCGTT TCAAGACCCA TAAAAAACAA 61 GACTGAGATC TCTTTTTGGG AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG 121 AAACAGGGAC GATCTCTCGA CTTCTTCAAC CGACTAAGGT TCCAAGTTCT AGATTTGCCA 181 GTTTCACTTC TAAATCTTCC ATATGCTGCA CGTGGACAAG GTTAATGCCT GCTTGCCATT 241 CCTCACATGG TGGGCGAGAA ATGAATTCTG ATGAGCGAGA GATTACAGTT TTATCTTCTG 301 AACTCACTCT TAAAAGAAGC AGTGTAGGTG GAGGATTGTC TTTACATCGC CCATTGCACA 361 AGAGAGATGT AGTTGGCAAA ACGTTCTGCT CTGTTGGATT GTCTACGTAT CCAGGGAGCA 421 TCGTTGAGTC TTCCTCACAG ACAGCTGAAG AAAAGATCGG AGTGCTACTT TTGAATCTTG 481 GCGGACCAGA CACGCTTCAT GATGTCCAGC CTTTTCTGTT CAACTTATTT GCTGATCCTG 541 ATATTATA Predicted gene structure (within gDNA segment 57606 to 54502): Exon 1 56239 56085 ( 155 n); cDNA 48 202 ( 155 n); score: 0.948 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 0.94), Pa: 0.970 (s: 0.92) Exon 2 55529 55193 ( 337 n); cDNA 203 539 ( 337 n); score: 0.935 Intron 2 55192 55086 ( 107 n); Pd: 0.980 (s: 0.98), Pa: 0.996 (s: 0) Exon 3 55085 55077 ( 9 n); cDNA 540 548 ( 9 n); score: 0.889 MATCH C08SLm0119I05.1- SGN-E269472+ 0.939 501 0.914 C PGS_C08SLm0119I05.1-_SGN-E269472+ (56239 56085,55529 55193,55085 55077) Alignment (genomic DNA sequence = upper lines): CCATAAAAAA CTAGAATAAG ATCTCTTTTT GGAAAGTTTT GATAGAAGAA AATCATCACA 56180 |||||||||| | ||| | || |||||||||| || ||||||| |||||||||| |||||||||| CCATAAAAAA CAAGACTGAG ATCTCTTTTT GGGAAGTTTT GATAGAAGAA AATCATCACA 107 TAGTAGATCA TGGAAACAGG GACGATCTCT CGACTTCTTA AACCGACTAA GGTTCCAAGT 56120 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGTAGATCA TGGAAACAGG GACGATCTCT CGACTTCTTC AACCGACTAA GGTTCCAAGT 167 TCTAGTTTTT CCAGTTTCAC TTCTAACTCT TCCATGTAAG CTTTTATGGG TTTTCATTTT 56060 ||||| ||| |||||||||| |||||| ||| ||||| TCTAGATTTG CCAGTTTCAC TTCTAAATCT TCCAT..... .......... .......... 202 CTTGGAAATT CCTTTCTTTT TTTCATATGG GTTGCTCTTA AATTTTGTTA TTGTCAATTA 56000 .......... .......... .......... .......... .......... .......... 202 TATGTTTTTA TAAGAATTCA GTTCCTTTTT TCTTTGTTGT AACGTTTGAT TTGATCAATT 55940 .......... .......... .......... .......... .......... .......... 202 ATATGAATAA CTGTTTGAAA AAGTCAGAAT CTTGATGAAA GGTTTAGGAT GTTTTGGGTT 55880 .......... .......... .......... .......... .......... .......... 202 TGGCTGGTGA ATGAGGTCAT TTGTTATGCA GAAGTTGTTG GTTCTTTTAT AATCAAATAC 55820 .......... .......... .......... .......... .......... .......... 202 CAACTTATGA TATGGGGAAA ATGCTTTGCG TACATTATTT AGAAAGTTAC TCTATAACTT 55760 .......... .......... .......... .......... .......... .......... 202 TGTAATGACA ATCTAATAAT GGGAGTGTAT CAAGTATGAT GACTCGATAG ATCTTGTGGA 55700 .......... .......... .......... .......... .......... .......... 202 GAAAAGAAAC TTTTTAGTGA GGAGATGCAC ATAGATTTTT CATTTCCATG CTGATTTCAA 55640 .......... .......... .......... .......... .......... .......... 202 TGCCAAAATG ATGCACTAAA CTTTTTAATG AGGAGATAGA CATAGATTTT TCATTTCCAT 55580 .......... .......... .......... .......... .......... .......... 202 GCTAATTTCA ATGCCGGAAT GATGTACTGA ATGAATCTTT ATCCTGGCAG ATGCTGCTCG 55520 ||||||| || .......... .......... .......... .......... .......... ATGCTGCACG 212 CGGACAAGGT TAATGCCTCC TTTCCATTCC TCACATGGTG GGCGAGAAAT GAATTCTGAT 55460 ||||||||| |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| TGGACAAGGT TAATGCCTGC TTGCCATTCC TCACATGGTG GGCGAGAAAT GAATTCTGAT 272 GAGCGGGAGA TTACAATTTT ATCTTCTGAA CTCACTCTCA AAAAAAGCAG TGTAGTTGAG 55400 ||||| |||| ||||| |||| |||||||||| |||||||| | ||| |||||| ||||| || GAGCGAGAGA TTACAGTTTT ATCTTCTGAA CTCACTCTTA AAAGAAGCAG TGTAGGTGGA 332 GGATTGTCTT TACATCGCCC AGTGCACAAG AGAGATGTAG TTGGCAAGAC GTTCTGCTCT 55340 |||||||||| |||||||||| | |||||||| |||||||||| ||||||| || |||||||||| GGATTGTCTT TACATCGCCC ATTGCACAAG AGAGATGTAG TTGGCAAAAC GTTCTGCTCT 392 GTTGGATTGT CTACATTTCC GGGGAGCATC GTTGAGTCTT CTTCCCAGAC AACTGAAGAA 55280 |||||||||| |||| | ||| ||||||||| |||||||||| | || ||||| | |||||||| GTTGGATTGT CTACGTATCC AGGGAGCATC GTTGAGTCTT CCTCACAGAC AGCTGAAGAA 452 AAGATCGGAG TGCTACTTTT GAATCTTGGA GGGCCAGACA CACTTCATGA TGTCCAGCCT 55220 |||||||||| |||||||||| ||||||||| || ||||||| | |||||||| |||||||||| AAGATCGGAG TGCTACTTTT GAATCTTGGC GGACCAGACA CGCTTCATGA TGTCCAGCCT 512 TTTCTGTTCA ACTTATTTGC TGATCCTGTA TGCTAACAAT CAGTCTTAAC TCATTTTTTT 55160 |||||||||| |||||||||| ||||||| TTTCTGTTCA ACTTATTTGC TGATCCT... .......... .......... .......... 539 TCCTAAGCTG GAGATTTTGG GCAATTTCGT TCTTTGTTTG TGTTTATGCT AATGGTATGA 55100 .......... .......... .......... .......... .......... .......... 539 ATTTCACATG GCAGGACATT ATA 55077 || ||| ||| .......... ....GATATT ATA 548 hqPGS_C08SLm0119I05.1-_SGN-E269472+ (56239 56085,55529 55193,55085 55077) ******************************************************************************** EST sequence 63 +strand 563 n (File: SGN-E211545+) 1 AATAATTTAC TTCTCCTGCT TCCGATCAAT CGCTCTCTCG CTCGCTCATT TGATTCCCGG 61 CACCGTTTCA AGACCCATAA AAAACAAGAC TGAGATCTCT TTTTGGGAAG TTTTGATAGA 121 AGAAAATCAT CACATAGTAG ATCATGGAAA CAGGGACGAT CTCTCGACTT CTTCAACCGA 181 CTAAGGTTCC AAGTTCTAGA TTTGCCAGTT TCACTTCTAA ATCTTCCATA TGCTGCACGT 241 GGACAAGGTT AATGCCTGCT TGCCATTCCT CACATGGTGG GCGAGAAATG AATTCTGATG 301 AGCGAGAGAT TACAGTTTTA TCTTCTGAAC TCACTCTTAA AAGAAGCAGT GTAGGTGGAG 361 GATTGTCTTT ACATCGCCCA TTGCACAAGA GAGATGTAGT TGGCAAAACG TTCTGCTCTG 421 TTGGATTGTC TACGTATCCA GGGAGCATCG TTGAGTCTTC CTCACAGACA GCTGAAGAAA 481 AGATCGGAGT GCTACTTTTG AATCTTGGCG GACCAGACAC GCTTCATGAT GTCCAGCCTT 541 TTCTGTTCAA CTTATTTGCT GAT Predicted gene structure (within gDNA segment 57876 to 54586): Exon 1 56239 56085 ( 155 n); cDNA 75 229 ( 155 n); score: 0.948 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 0.94), Pa: 0.970 (s: 0.92) Exon 2 55529 55196 ( 334 n); cDNA 230 563 ( 334 n); score: 0.934 MATCH C08SLm0119I05.1- SGN-E211545+ 0.939 489 0.869 C PGS_C08SLm0119I05.1-_SGN-E211545+ (56239 56085,55529 55196) Alignment (genomic DNA sequence = upper lines): CCATAAAAAA CTAGAATAAG ATCTCTTTTT GGAAAGTTTT GATAGAAGAA AATCATCACA 56180 |||||||||| | ||| | || |||||||||| || ||||||| |||||||||| |||||||||| CCATAAAAAA CAAGACTGAG ATCTCTTTTT GGGAAGTTTT GATAGAAGAA AATCATCACA 134 TAGTAGATCA TGGAAACAGG GACGATCTCT CGACTTCTTA AACCGACTAA GGTTCCAAGT 56120 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGTAGATCA TGGAAACAGG GACGATCTCT CGACTTCTTC AACCGACTAA GGTTCCAAGT 194 TCTAGTTTTT CCAGTTTCAC TTCTAACTCT TCCATGTAAG CTTTTATGGG TTTTCATTTT 56060 ||||| ||| |||||||||| |||||| ||| ||||| TCTAGATTTG CCAGTTTCAC TTCTAAATCT TCCAT..... .......... .......... 229 CTTGGAAATT CCTTTCTTTT TTTCATATGG GTTGCTCTTA AATTTTGTTA TTGTCAATTA 56000 .......... .......... .......... .......... .......... .......... 229 TATGTTTTTA TAAGAATTCA GTTCCTTTTT TCTTTGTTGT AACGTTTGAT TTGATCAATT 55940 .......... .......... .......... .......... .......... .......... 229 ATATGAATAA CTGTTTGAAA AAGTCAGAAT CTTGATGAAA GGTTTAGGAT GTTTTGGGTT 55880 .......... .......... .......... .......... .......... .......... 229 TGGCTGGTGA ATGAGGTCAT TTGTTATGCA GAAGTTGTTG GTTCTTTTAT AATCAAATAC 55820 .......... .......... .......... .......... .......... .......... 229 CAACTTATGA TATGGGGAAA ATGCTTTGCG TACATTATTT AGAAAGTTAC TCTATAACTT 55760 .......... .......... .......... .......... .......... .......... 229 TGTAATGACA ATCTAATAAT GGGAGTGTAT CAAGTATGAT GACTCGATAG ATCTTGTGGA 55700 .......... .......... .......... .......... .......... .......... 229 GAAAAGAAAC TTTTTAGTGA GGAGATGCAC ATAGATTTTT CATTTCCATG CTGATTTCAA 55640 .......... .......... .......... .......... .......... .......... 229 TGCCAAAATG ATGCACTAAA CTTTTTAATG AGGAGATAGA CATAGATTTT TCATTTCCAT 55580 .......... .......... .......... .......... .......... .......... 229 GCTAATTTCA ATGCCGGAAT GATGTACTGA ATGAATCTTT ATCCTGGCAG ATGCTGCTCG 55520 ||||||| || .......... .......... .......... .......... .......... ATGCTGCACG 239 CGGACAAGGT TAATGCCTCC TTTCCATTCC TCACATGGTG GGCGAGAAAT GAATTCTGAT 55460 ||||||||| |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| TGGACAAGGT TAATGCCTGC TTGCCATTCC TCACATGGTG GGCGAGAAAT GAATTCTGAT 299 GAGCGGGAGA TTACAATTTT ATCTTCTGAA CTCACTCTCA AAAAAAGCAG TGTAGTTGAG 55400 ||||| |||| ||||| |||| |||||||||| |||||||| | ||| |||||| ||||| || GAGCGAGAGA TTACAGTTTT ATCTTCTGAA CTCACTCTTA AAAGAAGCAG TGTAGGTGGA 359 GGATTGTCTT TACATCGCCC AGTGCACAAG AGAGATGTAG TTGGCAAGAC GTTCTGCTCT 55340 |||||||||| |||||||||| | |||||||| |||||||||| ||||||| || |||||||||| GGATTGTCTT TACATCGCCC ATTGCACAAG AGAGATGTAG TTGGCAAAAC GTTCTGCTCT 419 GTTGGATTGT CTACATTTCC GGGGAGCATC GTTGAGTCTT CTTCCCAGAC AACTGAAGAA 55280 |||||||||| |||| | ||| ||||||||| |||||||||| | || ||||| | |||||||| GTTGGATTGT CTACGTATCC AGGGAGCATC GTTGAGTCTT CCTCACAGAC AGCTGAAGAA 479 AAGATCGGAG TGCTACTTTT GAATCTTGGA GGGCCAGACA CACTTCATGA TGTCCAGCCT 55220 |||||||||| |||||||||| ||||||||| || ||||||| | |||||||| |||||||||| AAGATCGGAG TGCTACTTTT GAATCTTGGC GGACCAGACA CGCTTCATGA TGTCCAGCCT 539 TTTCTGTTCA ACTTATTTGC TGAT 55196 |||||||||| |||||||||| |||| TTTCTGTTCA ACTTATTTGC TGAT 563 hqPGS_C08SLm0119I05.1-_SGN-E211545+ (56239 56085,55529 55196) ******************************************************************************** EST sequence 84 +strand 418 n (File: SGN-E206007+) 1 TCTTTTTGGA ACGTTTTGAT TGAAGAAAAT CATCACATAG TAGATCATGG AAACAGGGAC 61 GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA GATGCACTTG 121 TAACTCTTAG CCTCCCCCAA ATATGCTGCT TGCGGACAAG GTTAATGCCT CCTTTCCATT 181 CCTCACATGG TGGGCGAGAA ATGAATTCTG ATGAGCGGGA GATTACAATC TTATCTGCTG 241 AACTCACTCT CAAAAAAAGC AGCGTACTTG AGGGATTGTC TTTACATCGC CCAGTGCACA 301 AGAGAGATGT AGATGGCGAG ACGTTCTGCT CTGTTGGATT GTCTACATTT CCGGGGAGCA 361 TCAGTGAGTC TTCTTCCCAG ACGACTGAAG AAAAGATCGG AGCGCTACTT TTGAATCT Predicted gene structure (within gDNA segment 57005 to 54500): Exon 1 56216 56085 ( 132 n); cDNA 1 133 ( 133 n); score: 0.928 Intron 1 56084 55539 ( 546 n); Pd: 0.928 (s: 0.85), Pa: 0.000 (s: 0.86) Exon 2 55538 55254 ( 285 n); cDNA 134 418 ( 285 n); score: 0.940 MATCH C08SLm0119I05.1- SGN-E206007+ 0.936 417 0.998 C PGS_C08SLm0119I05.1-_SGN-E206007+ (56216 56085,55538 55254) Alignment (genomic DNA sequence = upper lines): TCTTTTTGGA AAGTTTTGAT AGAAGAAAAT CATCACATAG TAGATCATGG AAACAGGGAC 56157 |||||||||| | |||||||| ||||||||| |||||||||| |||||||||| |||||||||| TCTTTTTGGA ACGTTTTGAT TGAAGAAAAT CATCACATAG TAGATCATGG AAACAGGGAC 60 GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA GTTTCACTTC 56097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | | ||||| GATCTCTCGA CTTCTTAAAC CGACTAAGGT TCCAAGTTCT AGTTTTTCCA GATGCACTTG 120 TAACTCTT-C CATGTAAGCT TTTATGGGTT TTCATTTTCT TGGAAATTCC TTTCTTTTTT 56038 |||||||| | | TAACTCTTAG CCT....... .......... .......... .......... .......... 133 TCATATGGGT TGCTCTTAAA TTTTGTTATT GTCAATTATA TGTTTTTATA AGAATTCAGT 55978 .......... .......... .......... .......... .......... .......... 133 TCCTTTTTTC TTTGTTGTAA CGTTTGATTT GATCAATTAT ATGAATAACT GTTTGAAAAA 55918 .......... .......... .......... .......... .......... .......... 133 GTCAGAATCT TGATGAAAGG TTTAGGATGT TTTGGGTTTG GCTGGTGAAT GAGGTCATTT 55858 .......... .......... .......... .......... .......... .......... 133 GTTATGCAGA AGTTGTTGGT TCTTTTATAA TCAAATACCA ACTTATGATA TGGGGAAAAT 55798 .......... .......... .......... .......... .......... .......... 133 GCTTTGCGTA CATTATTTAG AAAGTTACTC TATAACTTTG TAATGACAAT CTAATAATGG 55738 .......... .......... .......... .......... .......... .......... 133 GAGTGTATCA AGTATGATGA CTCGATAGAT CTTGTGGAGA AAAGAAACTT TTTAGTGAGG 55678 .......... .......... .......... .......... .......... .......... 133 AGATGCACAT AGATTTTTCA TTTCCATGCT GATTTCAATG CCAAAATGAT GCACTAAACT 55618 .......... .......... .......... .......... .......... .......... 133 TTTTAATGAG GAGATAGACA TAGATTTTTC ATTTCCATGC TAATTTCAAT GCCGGAATGA 55558 .......... .......... .......... .......... .......... .......... 133 TGTACTGAAT GAATCTTTAT CCTGGCAGAT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT 55498 || | || |||||| ||| |||||||||| |||||||||| .......... .........C CCCCAAATAT GCTGCTTGCG GACAAGGTTA ATGCCTCCTT 174 TCCATTCCTC ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT 55438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TCCATTCCTC ACATGGTGGG CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATCTTAT 234 CTTCTGAACT CACTCTCAAA AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG 55378 || ||||||| |||||||||| |||||||| | || ||||||| |||||||||| |||||||||| CTGCTGAACT CACTCTCAAA AAAAGCAGCG TACTTGAGGG ATTGTCTTTA CATCGCCCAG 294 TGCACAAGAG AGATGTAGTT GGCAAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG 55318 |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| |||||||||| TGCACAAGAG AGATGTAGAT GGCGAGACGT TCTGCTCTGT TGGATTGTCT ACATTTCCGG 354 GGAGCATCGT TGAGTCTTCT TCCCAGACAA CTGAAGAAAA GATCGGAGTG CTACTTTTGA 55258 |||||||| |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| GGAGCATCAG TGAGTCTTCT TCCCAGACGA CTGAAGAAAA GATCGGAGCG CTACTTTTGA 414 ATCT 55254 |||| ATCT 418 hqPGS_C08SLm0119I05.1-_SGN-E206007+ (56216 56085,55538 55254) ******************************************************************************** EST sequence 73 +strand 530 n (File: SGN-E271087+) 1 TCTTCTCAAT ATTTTACTTT TTTAGCCAAC CCCTTTAATT GGCTCACAAA AATTTCCACA 61 AACTATACTT TTTTCTGCAT TTAATAGTAT TATTTTTCTT TCAAACCCAT AAAAAACTAG 121 AATAAGATCT CTTTTTGGAA AGTTTTGATA GAAGAAAATC ATCACATAGT AGATCATGGA 181 AACAGGGACG ATCTCTCGAC TTCTTAAACC GACTAAGGTT CCAAGTTCTA GTTTTTCCAG 241 TTTCACTTCT AACTCTTCCA TATGCTGCTC GCGGACAAGG TTAATGCCTC CTTTCCATTC 301 CTCACATGGT GGGCGAGAAA TGAATTCTGA TGAGCGGGAG ATTACAATTT TATCTTCTGA 361 ACTCACTCTC AAAAAAAGCA GTGTAGTTGA GGGATTGTCT TTACATCGCC CAGTGCACAA 421 GAGAGATGTA GTTGGCAAGA CGTTCTGCTC TGTTGGATTG TCTACATTTC CGGGGAGCAT 481 CGTTGAGTCT TCTTCCCAGA CAACTGAAGA AAAGATCGGA GTGCTACTTT Predicted gene structure (within gDNA segment 56945 to 54651): Exon 1 56345 56085 ( 261 n); cDNA 1 261 ( 261 n); score: 0.992 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55261 ( 269 n); cDNA 262 530 ( 269 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E271087+ 0.996 530 1.000 C PGS_C08SLm0119I05.1-_SGN-E271087+ (56345 56085,55529 55261) Alignment (genomic DNA sequence = upper lines): TCTTCTCAAT ATTTTACTTT TTTAGCCAAC CCCTTTAATT TTCTCACAAA AATTTCCACA 56286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TCTTCTCAAT ATTTTACTTT TTTAGCCAAC CCCTTTAATT GGCTCACAAA AATTTCCACA 60 AACTATACTT TTTTCTGCAT TTAATAGTAT TATTTTTCTT TCAAACCCAT AAAAAACTAG 56226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTATACTT TTTTCTGCAT TTAATAGTAT TATTTTTCTT TCAAACCCAT AAAAAACTAG 120 AATAAGATCT CTTTTTGGAA AGTTTTGATA GAAGAAAATC ATCACATAGT AGATCATGGA 56166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGATCT CTTTTTGGAA AGTTTTGATA GAAGAAAATC ATCACATAGT AGATCATGGA 180 AACAGGGACG ATCTCTCGAC TTCTTAAACC GACTAAGGTT CCAAGTTCTA GTTTTTCCAG 56106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGGGACG ATCTCTCGAC TTCTTAAACC GACTAAGGTT CCAAGTTCTA GTTTTTCCAG 240 TTTCACTTCT AACTCTTCCA TGTAAGCTTT TATGGGTTTT CATTTTCTTG GAAATTCCTT 56046 |||||||||| |||||||||| | TTTCACTTCT AACTCTTCCA T......... .......... .......... .......... 261 TCTTTTTTTC ATATGGGTTG CTCTTAAATT TTGTTATTGT CAATTATATG TTTTTATAAG 55986 .......... .......... .......... .......... .......... .......... 261 AATTCAGTTC CTTTTTTCTT TGTTGTAACG TTTGATTTGA TCAATTATAT GAATAACTGT 55926 .......... .......... .......... .......... .......... .......... 261 TTGAAAAAGT CAGAATCTTG ATGAAAGGTT TAGGATGTTT TGGGTTTGGC TGGTGAATGA 55866 .......... .......... .......... .......... .......... .......... 261 GGTCATTTGT TATGCAGAAG TTGTTGGTTC TTTTATAATC AAATACCAAC TTATGATATG 55806 .......... .......... .......... .......... .......... .......... 261 GGGAAAATGC TTTGCGTACA TTATTTAGAA AGTTACTCTA TAACTTTGTA ATGACAATCT 55746 .......... .......... .......... .......... .......... .......... 261 AATAATGGGA GTGTATCAAG TATGATGACT CGATAGATCT TGTGGAGAAA AGAAACTTTT 55686 .......... .......... .......... .......... .......... .......... 261 TAGTGAGGAG ATGCACATAG ATTTTTCATT TCCATGCTGA TTTCAATGCC AAAATGATGC 55626 .......... .......... .......... .......... .......... .......... 261 ACTAAACTTT TTAATGAGGA GATAGACATA GATTTTTCAT TTCCATGCTA ATTTCAATGC 55566 .......... .......... .......... .......... .......... .......... 261 CGGAATGATG TACTGAATGA ATCTTTATCC TGGCAGATGC TGCTCGCGGA CAAGGTTAAT 55506 |||| |||||||||| |||||||||| .......... .......... .......... ......ATGC TGCTCGCGGA CAAGGTTAAT 285 GCCTCCTTTC CATTCCTCAC ATGGTGGGCG AGAAATGAAT TCTGATGAGC GGGAGATTAC 55446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTCCTTTC CATTCCTCAC ATGGTGGGCG AGAAATGAAT TCTGATGAGC GGGAGATTAC 345 AATTTTATCT TCTGAACTCA CTCTCAAAAA AAGCAGTGTA GTTGAGGGAT TGTCTTTACA 55386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTATCT TCTGAACTCA CTCTCAAAAA AAGCAGTGTA GTTGAGGGAT TGTCTTTACA 405 TCGCCCAGTG CACAAGAGAG ATGTAGTTGG CAAGACGTTC TGCTCTGTTG GATTGTCTAC 55326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCCAGTG CACAAGAGAG ATGTAGTTGG CAAGACGTTC TGCTCTGTTG GATTGTCTAC 465 ATTTCCGGGG AGCATCGTTG AGTCTTCTTC CCAGACAACT GAAGAAAAGA TCGGAGTGCT 55266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCGGGG AGCATCGTTG AGTCTTCTTC CCAGACAACT GAAGAAAAGA TCGGAGTGCT 525 ACTTT 55261 ||||| ACTTT 530 hqPGS_C08SLm0119I05.1-_SGN-E271087+ (56345 56085,55529 55261) ******************************************************************************** EST sequence 105 +strand 478 n (File: SGN-E273999+) 1 ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 61 TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 121 TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 181 TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 241 TCTCGACTTC TTAAACCGAC TAAGGTTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 301 TCTTCCATAT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT TCCATTCCTC ACATGGTGGG 361 CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT CTTCTGAACT CACTCTCAAA 421 AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CATCGCCCAG TGCACAAGAG AGATGTAG Predicted gene structure (within gDNA segment 56992 to 54750): Exon 1 56392 56085 ( 308 n); cDNA 1 308 ( 308 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 55529 55360 ( 170 n); cDNA 309 478 ( 170 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E273999+ 1.000 478 1.000 C PGS_C08SLm0119I05.1-_SGN-E273999+ (56392 56085,55529 55360) Alignment (genomic DNA sequence = upper lines): ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 56333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 60 TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 56273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 120 TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 56213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 180 TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 56153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 240 TCTCGACTTC TTAAACCGAC TAAGGTTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGACTTC TTAAACCGAC TAAGGTTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 300 TCTTCCATGT AAGCTTTTAT GGGTTTTCAT TTTCTTGGAA ATTCCTTTCT TTTTTTCATA 56033 |||||||| TCTTCCAT.. .......... .......... .......... .......... .......... 308 TGGGTTGCTC TTAAATTTTG TTATTGTCAA TTATATGTTT TTATAAGAAT TCAGTTCCTT 55973 .......... .......... .......... .......... .......... .......... 308 TTTTCTTTGT TGTAACGTTT GATTTGATCA ATTATATGAA TAACTGTTTG AAAAAGTCAG 55913 .......... .......... .......... .......... .......... .......... 308 AATCTTGATG AAAGGTTTAG GATGTTTTGG GTTTGGCTGG TGAATGAGGT CATTTGTTAT 55853 .......... .......... .......... .......... .......... .......... 308 GCAGAAGTTG TTGGTTCTTT TATAATCAAA TACCAACTTA TGATATGGGG AAAATGCTTT 55793 .......... .......... .......... .......... .......... .......... 308 GCGTACATTA TTTAGAAAGT TACTCTATAA CTTTGTAATG ACAATCTAAT AATGGGAGTG 55733 .......... .......... .......... .......... .......... .......... 308 TATCAAGTAT GATGACTCGA TAGATCTTGT GGAGAAAAGA AACTTTTTAG TGAGGAGATG 55673 .......... .......... .......... .......... .......... .......... 308 CACATAGATT TTTCATTTCC ATGCTGATTT CAATGCCAAA ATGATGCACT AAACTTTTTA 55613 .......... .......... .......... .......... .......... .......... 308 ATGAGGAGAT AGACATAGAT TTTTCATTTC CATGCTAATT TCAATGCCGG AATGATGTAC 55553 .......... .......... .......... .......... .......... .......... 308 TGAATGAATC TTTATCCTGG CAGATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT 55493 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT 345 TCCTCACATG GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT 55433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACATG GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT 405 GAACTCACTC TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACATCG CCCAGTGCAC 55373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCACTC TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACATCG CCCAGTGCAC 465 AAGAGAGATG TAG 55360 |||||||||| ||| AAGAGAGATG TAG 478 hqPGS_C08SLm0119I05.1-_SGN-E273999+ (56392 56085,55529 55360) ******************************************************************************** EST sequence 106 +strand 452 n (File: SGN-E274044+) 1 ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 61 TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 121 TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 181 TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 241 TCTCGACTTC TTAAACCGAC TAAGGCTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 301 TCTTCCATAT GCTGCTCGCG GACAAGGTTA ATGCCTCCTT TCCATTCCTC ACATGGTGGG 361 CGAGAAATGA ATTCTGATGA GCGGGAGATT ACAATTTTAT CTTCTGAACT CACTCTCAAA 421 AAAAGCAGTG TAGTTGAGGG ATTGTCTTTA CA Predicted gene structure (within gDNA segment 56992 to 54776): Exon 1 56392 56085 ( 308 n); cDNA 1 308 ( 308 n); score: 0.997 Intron 1 56084 55530 ( 555 n); Pd: 0.928 (s: 0.98), Pa: 0.970 (s: 1.00) Exon 2 55529 55386 ( 144 n); cDNA 309 452 ( 144 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E274044+ 0.998 452 1.000 C PGS_C08SLm0119I05.1-_SGN-E274044+ (56392 56085,55529 55386) Alignment (genomic DNA sequence = upper lines): ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 56333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTCTCC ATCCAATTAG CTTCCATAAA CCCTATATTT CTTTGACTCT TCTCAATATT 60 TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 56273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTTTTT AGCCAACCCC TTTAATTTTC TCACAAAAAT TTCCACAAAC TATACTTTTT 120 TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 56213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCATTTA ATAGTATTAT TTTTCTTTCA AACCCATAAA AAACTAGAAT AAGATCTCTT 180 TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 56153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAAAGT TTTGATAGAA GAAAATCATC ACATAGTAGA TCATGGAAAC AGGGACGATC 240 TCTCGACTTC TTAAACCGAC TAAGGTTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 56093 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TCTCGACTTC TTAAACCGAC TAAGGCTCCA AGTTCTAGTT TTTCCAGTTT CACTTCTAAC 300 TCTTCCATGT AAGCTTTTAT GGGTTTTCAT TTTCTTGGAA ATTCCTTTCT TTTTTTCATA 56033 |||||||| TCTTCCAT.. .......... .......... .......... .......... .......... 308 TGGGTTGCTC TTAAATTTTG TTATTGTCAA TTATATGTTT TTATAAGAAT TCAGTTCCTT 55973 .......... .......... .......... .......... .......... .......... 308 TTTTCTTTGT TGTAACGTTT GATTTGATCA ATTATATGAA TAACTGTTTG AAAAAGTCAG 55913 .......... .......... .......... .......... .......... .......... 308 AATCTTGATG AAAGGTTTAG GATGTTTTGG GTTTGGCTGG TGAATGAGGT CATTTGTTAT 55853 .......... .......... .......... .......... .......... .......... 308 GCAGAAGTTG TTGGTTCTTT TATAATCAAA TACCAACTTA TGATATGGGG AAAATGCTTT 55793 .......... .......... .......... .......... .......... .......... 308 GCGTACATTA TTTAGAAAGT TACTCTATAA CTTTGTAATG ACAATCTAAT AATGGGAGTG 55733 .......... .......... .......... .......... .......... .......... 308 TATCAAGTAT GATGACTCGA TAGATCTTGT GGAGAAAAGA AACTTTTTAG TGAGGAGATG 55673 .......... .......... .......... .......... .......... .......... 308 CACATAGATT TTTCATTTCC ATGCTGATTT CAATGCCAAA ATGATGCACT AAACTTTTTA 55613 .......... .......... .......... .......... .......... .......... 308 ATGAGGAGAT AGACATAGAT TTTTCATTTC CATGCTAATT TCAATGCCGG AATGATGTAC 55553 .......... .......... .......... .......... .......... .......... 308 TGAATGAATC TTTATCCTGG CAGATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT 55493 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATGCTGC TCGCGGACAA GGTTAATGCC TCCTTTCCAT 345 TCCTCACATG GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT 55433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACATG GTGGGCGAGA AATGAATTCT GATGAGCGGG AGATTACAAT TTTATCTTCT 405 GAACTCACTC TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACA 55386 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAACTCACTC TCAAAAAAAG CAGTGTAGTT GAGGGATTGT CTTTACA 452 hqPGS_C08SLm0119I05.1-_SGN-E274044+ (56392 56085,55529 55386) ******************************************************************************** EST sequence 74 -strand 659 n (File: SGN-E204142-) 1 GTGAATAAGC TTCTACGGTG GTGGGGTATA TATATATATT AATAAATCAG AGTATTTTTT 61 ATTACAGAGA ATAAATGGAG TTTAANCCGC ATAAACATTA ATATATAACA ATACATCAAA 121 TATTAATCAG GCTCCACAAC CTAACAAGTT GATCATAAAT TAATAATACC TCAAACTTAA 181 AGCTCTAAGA AGGAAAAGAG GAGAGGTTAT ACAGGTAAGT GTATTTCAAT TGTTCCACAT 241 TCTATAAAAG CATAAAACAA ACACGACAAA TGTTGCATTT GTTGTTAAGT AGTAGAATTT 301 TACACTGGAA GCAAACGTAT TACTTATACA AGATTATACT TAGTAATCCA AAGTTTCATA 361 TTGCATTTCA AACTTTGTAT GAGTCATGAG GATTTAAAGC TTACGAGTTT TAAAGTCACA 421 GCTCTATTGT TTACTGGGTT CGAACAGGAG CGGCTCAAGA ATATTAGTGG CATAAAGCGA 481 AAATCAAACG GGGTCTTAAA CTTGAATTAT TAATAACTTT TATATAATTG ATTTCTTCTA 541 GTTTTCAATT GATAATATAA TCGTTCTTAT CTTTTAAATT ATTTTTCATG AGATATAGTA 601 CTCTAAATAC ATCAAATTTC TTCCAATAAT TCCTTAATTT TTCATGAAAA ATTTACTTT Predicted gene structure (within gDNA segment 56180 to 63520): Exon 1 59142 59151 ( 10 n); cDNA 390 399 ( 10 n); score: 0.800 Intron 1 59152 60101 ( 950 n); Pd: 0.233 (s: 0), Pa: 0.487 (s: 0.59) Exon 2 60102 60142 ( 41 n); cDNA 400 436 ( 37 n); score: 0.585 Intron 2 60143 61822 (1680 n); Pd: 0.000 (s: 0.59), Pa: 0.957 (s: 0.78) Exon 3 61823 62044 ( 222 n); cDNA 437 659 ( 223 n); score: 0.849 MATCH C08SLm0119I05.1+ SGN-E204142- 0.849 273 0.414 C PGS_C08SLm0119I05.1+_SGN-E204142- (59142 59151,60102 60142,61823 62044) Alignment (genomic DNA sequence = upper lines): GGATTTGAAA GTAAGTGATT TTTAGCCTAG CTTGCACATG ACAAATCAAA GATATAAATA 59201 |||||| || GGATTTAAAG .......... .......... .......... .......... .......... 399 AATCTAAAAT AACTAAGTCA AGAGTACAAG CATGTTTGTG TTCTTTTCTT TTTTTCTTTC 59261 .......... .......... .......... .......... .......... .......... 399 CTAAAAGGTG CTCATAGTTG AGTATCATCT TCAACTTCAG ATATGTGCTA TTTTAGCAGC 59321 .......... .......... .......... .......... .......... .......... 399 ATATAAGTGA AGCTCACAGA AACTAAAACC GTTAGCCGAT TTTGATGGTC TAATGGATAC 59381 .......... .......... .......... .......... .......... .......... 399 AACATCCTGA TTCTTTCAGA AGTTCACAAA GTTCTTATTC AAATAAATAA AGCTACATTT 59441 .......... .......... .......... .......... .......... .......... 399 TTCACAAAGT ACAATCTTCA AGAAAATGAC TTTATCAAAC AAACTAAATA AATTACGGCT 59501 .......... .......... .......... .......... .......... .......... 399 AAATAAAAAG CTTTAAACCT AAACCCAAGA TAAAAGGCAT GTAATTTGAA GTTCCTGTTA 59561 .......... .......... .......... .......... .......... .......... 399 AATGGAATGT AGCTTATTGA CTGCTGTGTG CATACTTTGA AGGGAAATGA ACAAGAAAGC 59621 .......... .......... .......... .......... .......... .......... 399 CTTGAAGGTC TGAAAAATAT GTTCATATCA GGGTCTTCGA TTTCTAGAGA CTTTTGGTAC 59681 .......... .......... .......... .......... .......... .......... 399 ACTTATAAGG AGTTATTAGT ATAGGTGTTT GAGAGTTTTT TTAGAGAACC TTTTATTTCT 59741 .......... .......... .......... .......... .......... .......... 399 TGCTTATCTT TGGTTGTGTA GGAGTGTACA ATTTCTTTAA TTTTTCTAAG ACAATGTTAA 59801 .......... .......... .......... .......... .......... .......... 399 TCCTATCCAA ATAATGTATG TTACTAAAGT AAATAAAATC AATATAAATT AAAATTCAAG 59861 .......... .......... .......... .......... .......... .......... 399 AAAGTCGGAA TGTCTTCCTA TCACCATAAC CTTAAAGAGC CAAGGGGATG GGTTTCTTCA 59921 .......... .......... .......... .......... .......... .......... 399 TAGTAAATTG CAATTCTCCA TCCATCACGA TTGAAGAATA GATTGCATTC AATTGTTACC 59981 .......... .......... .......... .......... .......... .......... 399 TAATTCTACA AATACCAATA AAAGTATTTC ACTATAACCA ACAAAAGGTA TAATATCATC 60041 .......... .......... .......... .......... .......... .......... 399 CACTAATTTT TTATTCAACA ATATGATGAG AAGTATAATA CAAACGAAAA TTGTATTCAG 60101 .......... .......... .......... .......... .......... .......... 399 TTCACTAATT GACAATATCC ACACAACACT ATTAAATACT GAACGACACC CATATATTTT 60161 | || | || || | |||| | || ||| |||| | CTTACGAGTT -TTAA-A--G TCACAGCTCT ATTGTTTACT G......... .......... 436 ACGAGCAGTT AAGAGACTTT GATTAACAAA TGATGGGTAG ATGTAGAAGT TAAAATACAG 60221 .......... .......... .......... .......... .......... .......... 436 TGACAACAAC ACCTGAAACA GCTACAGTAC AAGTAGCGTG GTTGTTATCG CTGATTGTCA 60281 .......... .......... .......... .......... .......... .......... 436 GTACCAGAGT TTGATGGAGA ATAAGTGGGA ATGCTCTCCA TCAGCGGTTT ATTGGTGAAG 60341 .......... .......... .......... .......... .......... .......... 436 ATTCTCAACT TTTTTCACTT GAGAGAGAGT TTTGGAAGAT TTCGCGGACA ATATCGAGTA 60401 .......... .......... .......... .......... .......... .......... 436 ACACAACTTC ACCTTTTCAT ATGCTTTTAA GCTACACTTA TGGGGGTGTT GGATACGGAG 60461 .......... .......... .......... .......... .......... .......... 436 AAAACATTTC AATTTTACTG TTTCATTCCA AAATTTAGAT GGGTAATTGA ATCCAGACTA 60521 .......... .......... .......... .......... .......... .......... 436 CCATGTTTGA TAACTCATCC ATAACCTCTA GCAATTGATA TGGGGTGTAT GCTTATGAAT 60581 .......... .......... .......... .......... .......... .......... 436 AAACAAACAC AATTGTGAAC TCTTTAGTAG ATCAGCCAGT AATTAGTAAT ATATATTATT 60641 .......... .......... .......... .......... .......... .......... 436 TTCTTCTAAA TAAATCAACA ATTACATCAG TCATGTAGTT CAGTCGTAAA TTTGGAAGAG 60701 .......... .......... .......... .......... .......... .......... 436 AGCATACCTG GAATTATGAA GACTTGTGAA TCGATTTACT GAAGTTGGAA CAAAAGGGAT 60761 .......... .......... .......... .......... .......... .......... 436 GGAATAAAGG GTGCTTTTTT GCCGAGTGTT TGTGCTTGGA AAATGAGTTA GAAATCTGTT 60821 .......... .......... .......... .......... .......... .......... 436 GTTTGGAGTG TGAAAGACGG CAGACGGATG GTTCTAGAAG ATGGAAGATC GATGGGTATT 60881 .......... .......... .......... .......... .......... .......... 436 TGGAATTGAA ATCCGTTCAT TTGTTAGTGT GAAATTACAG TGTTACCCTT GATGGAAGAT 60941 .......... .......... .......... .......... .......... .......... 436 CGATGGGTCC AGAAATCTGC ATTTGAAATT GAAATCTGTA TATTTATTAG TGTGAAATTA 61001 .......... .......... .......... .......... .......... .......... 436 CAGTGTTGCC CTTGATGGAA GATCGATGGT CCAAAAATCT GCATTTGGAA TTGAAATCTA 61061 .......... .......... .......... .......... .......... .......... 436 TCCATTTATT AGTGTGAAAT TACAGTGTTG CCCTTGATCG CCTCCTCAAC GTATAATATC 61121 .......... .......... .......... .......... .......... .......... 436 ATAAGTTGGT AGAAAATGAT TGGCAAGGCA TCTGAACTAA TCATGTGAGC GGTTAGACAC 61181 .......... .......... .......... .......... .......... .......... 436 TTCACATGTT ATAACTTGCT CTATCGATAA ATAGTTGTCC ACTATTGATT TAGCATATTC 61241 .......... .......... .......... .......... .......... .......... 436 TTAAAGAAAT AATAAAAGTA ATTTTATTAT TTTATTTTTA TTAAATTTAA TTCTTTTAAT 61301 .......... .......... .......... .......... .......... .......... 436 ATGTATTAGA TGTTAAATAA TATTTAATAG CAATAATAAA ATAGATAAAA AAAATAAATT 61361 .......... .......... .......... .......... .......... .......... 436 ATCTTTTAAT TTTTTAAACT GAACAAATAT TGTTGAACAA TTATTTTTAA TATAGTAAAT 61421 .......... .......... .......... .......... .......... .......... 436 AACTATTATC GAACATGAAG AATATACAAT AGATACTTGT ATCCAAACTT GTGATATTTC 61481 .......... .......... .......... .......... .......... .......... 436 CAACAATTGA GCTATAAATG TAGTTGTCAT TCCATTTTAA TTAAAAAAAA TTGACTCTTT 61541 .......... .......... .......... .......... .......... .......... 436 CTAAAAATTT ATTACAATTA TTCAACACTA TGAGATAGAA AAAAATTGAC TCTTTGTAAA 61601 .......... .......... .......... .......... .......... .......... 436 TGACAAGTAA ATCACCAAGC TTTTAAAGTA TATTGTCTTT GATTGAGAAT TAATAGGGCT 61661 .......... .......... .......... .......... .......... .......... 436 TGCTAGTGTT ATATTATTTG GATCACGTGT ATATTTAATA GGTGTTATAG GCCGATCAAA 61721 .......... .......... .......... .......... .......... .......... 436 TAAAAAAATA ATATTCTCTC CGTTTAAAAA AGAATGACCT TTTTTTTGTC TGTTTTAAAA 61781 .......... .......... .......... .......... .......... .......... 436 TGAATGACAT CTTTCTTTTT TTTGTAACGT TTTAAAATCA GCTTTCTACC AGGAGCGATT 61841 ||| | | ||||||| | .......... .......... .......... .......... .GGTTCGAAC AGGAGCGGCT 455 CAAGCATATT AATGGCCTAA AACAAAAATC AAACGGGGCC TTTAAATTTG AATTTATCAA 61901 |||| ||||| | |||| ||| | | |||||| |||||||| | ||||| ||| || |||| || CAAGAATATT AGTGGCATAA AGCGAAAATC AAACGGGGTC -TTAAACTTG AA-TTATTAA 513 TAACTTTTAT ATAATTGATT TCTTCTAATT TTCAATTGAT AATATAATCA TTCTTA--TT 61959 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||| || TAACTTTTAT ATAATTGATT TCTTCTAGTT TTCAATTGAT AATATAATCG TTCTTATCTT 573 TTAAATTATT TTTAATGAGA TATAGTACTC CAAATATGTC AAATTTCTTC TAATAATTTC 62019 |||||||||| ||| |||||| |||||||||| ||||| || |||||||||| ||||||| | TTAAATTATT TTTCATGAGA TATAGTACTC TAAATACATC AAATTTCTTC CAATAATTCC 633 TTCA-TTTTC ATGAAAAGTT TACTTT 62044 || | ||||| ||||||| || |||||| TTAATTTTTC ATGAAAAATT TACTTT 659 hqPGS_C08SLm0119I05.1+_SGN-E204142- (61823 62044) ******************************************************************************** EST sequence 81 -strand 636 n (File: SGN-E205925-) 1 GGTATATATA TATATGAATA AATCAGAGTA TTTTTTATTA CAGAGAATAA ATGGAGTTTA 61 AACCGCATAA ACATTAATAT ATAGCAATAC ATCAAATATT AATCAGGCTC CACAACCTAA 121 CAAGTTGATC ATAAATTAAT AATACCTCAA ACTTAAAGCT CTAAGAAGGA AAAGAGGAGA 181 GGTTATACAG GTAAGTGTAT TTCAATTGTT CCACATTCTA TAAAAGCATA AAACAGAAAC 241 GACAAATGTT GCATTTGTTG TTAAGTAGTA GAATTTTACA CTGGAAGCAA ACGTATTACT 301 TATACAAGAT TATACTTAGT AATCCAAAGT TTCATATTGC ATTTCAAACT TTGTATGAGT 361 CATGAGGATT TAAAGCTTAC GAGTTTTAAA GTCACAGCTC TATTGTTTAC TGGGTTCGAA 421 CAGGAGCGGC TCAAGAATAT TAGTGGCATA AAGCGAAAAT CAAACGGGGT CTTAAACTTG 481 AATTATTAAT AACTTTTATA TAATTGATTT CTTCTAGTTT TCAATTGATA ATATAATCGT 541 TCTTATCTTT TAAATTATTT TTCATGAGAT ATAGTACTCT AAACTACATC AAATTTCTTC 601 CAATAATTCC TTAATTTTTC ATGAAAAATT TACTTT Predicted gene structure (within gDNA segment 56420 to 63530): Exon 1 59142 59151 ( 10 n); cDNA 366 375 ( 10 n); score: 0.800 Intron 1 59152 60101 ( 950 n); Pd: 0.233 (s: 0), Pa: 0.487 (s: 0.59) Exon 2 60102 60142 ( 41 n); cDNA 376 412 ( 37 n); score: 0.585 Intron 2 60143 61822 (1680 n); Pd: 0.000 (s: 0.59), Pa: 0.957 (s: 0.78) Exon 3 61823 62044 ( 222 n); cDNA 413 636 ( 224 n); score: 0.838 MATCH C08SLm0119I05.1+ SGN-E205925- 0.838 273 0.429 C PGS_C08SLm0119I05.1+_SGN-E205925- (59142 59151,60102 60142,61823 62044) Alignment (genomic DNA sequence = upper lines): GGATTTGAAA GTAAGTGATT TTTAGCCTAG CTTGCACATG ACAAATCAAA GATATAAATA 59201 |||||| || GGATTTAAAG .......... .......... .......... .......... .......... 375 AATCTAAAAT AACTAAGTCA AGAGTACAAG CATGTTTGTG TTCTTTTCTT TTTTTCTTTC 59261 .......... .......... .......... .......... .......... .......... 375 CTAAAAGGTG CTCATAGTTG AGTATCATCT TCAACTTCAG ATATGTGCTA TTTTAGCAGC 59321 .......... .......... .......... .......... .......... .......... 375 ATATAAGTGA AGCTCACAGA AACTAAAACC GTTAGCCGAT TTTGATGGTC TAATGGATAC 59381 .......... .......... .......... .......... .......... .......... 375 AACATCCTGA TTCTTTCAGA AGTTCACAAA GTTCTTATTC AAATAAATAA AGCTACATTT 59441 .......... .......... .......... .......... .......... .......... 375 TTCACAAAGT ACAATCTTCA AGAAAATGAC TTTATCAAAC AAACTAAATA AATTACGGCT 59501 .......... .......... .......... .......... .......... .......... 375 AAATAAAAAG CTTTAAACCT AAACCCAAGA TAAAAGGCAT GTAATTTGAA GTTCCTGTTA 59561 .......... .......... .......... .......... .......... .......... 375 AATGGAATGT AGCTTATTGA CTGCTGTGTG CATACTTTGA AGGGAAATGA ACAAGAAAGC 59621 .......... .......... .......... .......... .......... .......... 375 CTTGAAGGTC TGAAAAATAT GTTCATATCA GGGTCTTCGA TTTCTAGAGA CTTTTGGTAC 59681 .......... .......... .......... .......... .......... .......... 375 ACTTATAAGG AGTTATTAGT ATAGGTGTTT GAGAGTTTTT TTAGAGAACC TTTTATTTCT 59741 .......... .......... .......... .......... .......... .......... 375 TGCTTATCTT TGGTTGTGTA GGAGTGTACA ATTTCTTTAA TTTTTCTAAG ACAATGTTAA 59801 .......... .......... .......... .......... .......... .......... 375 TCCTATCCAA ATAATGTATG TTACTAAAGT AAATAAAATC AATATAAATT AAAATTCAAG 59861 .......... .......... .......... .......... .......... .......... 375 AAAGTCGGAA TGTCTTCCTA TCACCATAAC CTTAAAGAGC CAAGGGGATG GGTTTCTTCA 59921 .......... .......... .......... .......... .......... .......... 375 TAGTAAATTG CAATTCTCCA TCCATCACGA TTGAAGAATA GATTGCATTC AATTGTTACC 59981 .......... .......... .......... .......... .......... .......... 375 TAATTCTACA AATACCAATA AAAGTATTTC ACTATAACCA ACAAAAGGTA TAATATCATC 60041 .......... .......... .......... .......... .......... .......... 375 CACTAATTTT TTATTCAACA ATATGATGAG AAGTATAATA CAAACGAAAA TTGTATTCAG 60101 .......... .......... .......... .......... .......... .......... 375 TTCACTAATT GACAATATCC ACACAACACT ATTAAATACT GAACGACACC CATATATTTT 60161 | || | || || | |||| | || ||| |||| | CTTACGAGTT -TTAA-A--G TCACAGCTCT ATTGTTTACT G......... .......... 412 ACGAGCAGTT AAGAGACTTT GATTAACAAA TGATGGGTAG ATGTAGAAGT TAAAATACAG 60221 .......... .......... .......... .......... .......... .......... 412 TGACAACAAC ACCTGAAACA GCTACAGTAC AAGTAGCGTG GTTGTTATCG CTGATTGTCA 60281 .......... .......... .......... .......... .......... .......... 412 GTACCAGAGT TTGATGGAGA ATAAGTGGGA ATGCTCTCCA TCAGCGGTTT ATTGGTGAAG 60341 .......... .......... .......... .......... .......... .......... 412 ATTCTCAACT TTTTTCACTT GAGAGAGAGT TTTGGAAGAT TTCGCGGACA ATATCGAGTA 60401 .......... .......... .......... .......... .......... .......... 412 ACACAACTTC ACCTTTTCAT ATGCTTTTAA GCTACACTTA TGGGGGTGTT GGATACGGAG 60461 .......... .......... .......... .......... .......... .......... 412 AAAACATTTC AATTTTACTG TTTCATTCCA AAATTTAGAT GGGTAATTGA ATCCAGACTA 60521 .......... .......... .......... .......... .......... .......... 412 CCATGTTTGA TAACTCATCC ATAACCTCTA GCAATTGATA TGGGGTGTAT GCTTATGAAT 60581 .......... .......... .......... .......... .......... .......... 412 AAACAAACAC AATTGTGAAC TCTTTAGTAG ATCAGCCAGT AATTAGTAAT ATATATTATT 60641 .......... .......... .......... .......... .......... .......... 412 TTCTTCTAAA TAAATCAACA ATTACATCAG TCATGTAGTT CAGTCGTAAA TTTGGAAGAG 60701 .......... .......... .......... .......... .......... .......... 412 AGCATACCTG GAATTATGAA GACTTGTGAA TCGATTTACT GAAGTTGGAA CAAAAGGGAT 60761 .......... .......... .......... .......... .......... .......... 412 GGAATAAAGG GTGCTTTTTT GCCGAGTGTT TGTGCTTGGA AAATGAGTTA GAAATCTGTT 60821 .......... .......... .......... .......... .......... .......... 412 GTTTGGAGTG TGAAAGACGG CAGACGGATG GTTCTAGAAG ATGGAAGATC GATGGGTATT 60881 .......... .......... .......... .......... .......... .......... 412 TGGAATTGAA ATCCGTTCAT TTGTTAGTGT GAAATTACAG TGTTACCCTT GATGGAAGAT 60941 .......... .......... .......... .......... .......... .......... 412 CGATGGGTCC AGAAATCTGC ATTTGAAATT GAAATCTGTA TATTTATTAG TGTGAAATTA 61001 .......... .......... .......... .......... .......... .......... 412 CAGTGTTGCC CTTGATGGAA GATCGATGGT CCAAAAATCT GCATTTGGAA TTGAAATCTA 61061 .......... .......... .......... .......... .......... .......... 412 TCCATTTATT AGTGTGAAAT TACAGTGTTG CCCTTGATCG CCTCCTCAAC GTATAATATC 61121 .......... .......... .......... .......... .......... .......... 412 ATAAGTTGGT AGAAAATGAT TGGCAAGGCA TCTGAACTAA TCATGTGAGC GGTTAGACAC 61181 .......... .......... .......... .......... .......... .......... 412 TTCACATGTT ATAACTTGCT CTATCGATAA ATAGTTGTCC ACTATTGATT TAGCATATTC 61241 .......... .......... .......... .......... .......... .......... 412 TTAAAGAAAT AATAAAAGTA ATTTTATTAT TTTATTTTTA TTAAATTTAA TTCTTTTAAT 61301 .......... .......... .......... .......... .......... .......... 412 ATGTATTAGA TGTTAAATAA TATTTAATAG CAATAATAAA ATAGATAAAA AAAATAAATT 61361 .......... .......... .......... .......... .......... .......... 412 ATCTTTTAAT TTTTTAAACT GAACAAATAT TGTTGAACAA TTATTTTTAA TATAGTAAAT 61421 .......... .......... .......... .......... .......... .......... 412 AACTATTATC GAACATGAAG AATATACAAT AGATACTTGT ATCCAAACTT GTGATATTTC 61481 .......... .......... .......... .......... .......... .......... 412 CAACAATTGA GCTATAAATG TAGTTGTCAT TCCATTTTAA TTAAAAAAAA TTGACTCTTT 61541 .......... .......... .......... .......... .......... .......... 412 CTAAAAATTT ATTACAATTA TTCAACACTA TGAGATAGAA AAAAATTGAC TCTTTGTAAA 61601 .......... .......... .......... .......... .......... .......... 412 TGACAAGTAA ATCACCAAGC TTTTAAAGTA TATTGTCTTT GATTGAGAAT TAATAGGGCT 61661 .......... .......... .......... .......... .......... .......... 412 TGCTAGTGTT ATATTATTTG GATCACGTGT ATATTTAATA GGTGTTATAG GCCGATCAAA 61721 .......... .......... .......... .......... .......... .......... 412 TAAAAAAATA ATATTCTCTC CGTTTAAAAA AGAATGACCT TTTTTTTGTC TGTTTTAAAA 61781 .......... .......... .......... .......... .......... .......... 412 TGAATGACAT CTTTCTTTTT TTTGTAACGT TTTAAAATCA GCTTTCTACC AGGAGCGATT 61841 ||| | | ||||||| | .......... .......... .......... .......... .GGTTCGAAC AGGAGCGGCT 431 CAAGCATATT AATGGCCTAA AACAAAAATC AAACGGGGCC TTTAAATTTG AATTTATCAA 61901 |||| ||||| | |||| ||| | | |||||| |||||||| | ||||| ||| || |||| || CAAGAATATT AGTGGCATAA AGCGAAAATC AAACGGGGTC -TTAAACTTG AA-TTATTAA 489 TAACTTTTAT ATAATTGATT TCTTCTAATT TTCAATTGAT AATATAATCA TTCTTA--TT 61959 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||| || TAACTTTTAT ATAATTGATT TCTTCTAGTT TTCAATTGAT AATATAATCG TTCTTATCTT 549 TTAAATTATT TTTAATGAGA TATAGTACTC CAAA-TATGT CAAATTTCTT CTAATAATTT 62018 |||||||||| ||| |||||| |||||||||| ||| || | |||||||||| | ||||||| TTAAATTATT TTTCATGAGA TATAGTACTC TAAACTACAT CAAATTTCTT CCAATAATTC 609 CTTCA-TTTT CATGAAAAGT TTACTTT 62044 ||| | |||| |||||||| | ||||||| CTTAATTTTT CATGAAAAAT TTACTTT 636 hqPGS_C08SLm0119I05.1+_SGN-E205925- (61823 62044) ******************************************************************************** EST sequence 83 -strand 589 n (File: SGN-E375311-) 1 ATAAATGGAG TTTAAACCGC ATAAACATTA ATATATAACA ATACATCAAA TATTAATCAG 61 GCTCCACAAC CTAACAAGTT GATCATAAAT TAATAATACC TCAAACTTAA AGCTCTAAGA 121 AGGAAAAGAG GAGAGGTTAT ACAGGTAAGT GTATTTCAAT TGTTCCACAT TCTATAAAAG 181 CATAAAACAA AAACGACAAA TGTTGCATTT GTTGTTAAGT AGTAGAATTT TACACTGGAA 241 GCAAACGTAT TACTTATACA AGATTATACT TAGTAATCCA AAGTTTCATA TTGCATTTCA 301 AACTTTGTAT GAGTCATGAG GATTTAAAGC TTACGAGTTT TAAAGTCACA GCTCTATTGT 361 TTACTGGGTT CGAACAGGAG CGGCTCAAGA ATATTAGTGG CATAAAGCGA AAATCAAACG 421 GGGTCTTAAA CTTGAATTAT TAATAACTTT TATATAATTG ATTTCTTCTA GTTTTCAATT 481 GATAATATAA TCGTTCTTAT CTTTTAAATT ATTTTTCATG AGATATAGTA CTCTAAATAC 541 ATCAAATTTC TTCCAATAAT TCCTTAATTT TTCATGAAAA ATTTACTTT Predicted gene structure (within gDNA segment 56880 to 63520): Exon 1 59142 59151 ( 10 n); cDNA 320 329 ( 10 n); score: 0.800 Intron 1 59152 60101 ( 950 n); Pd: 0.233 (s: 0), Pa: 0.487 (s: 0.59) Exon 2 60102 60142 ( 41 n); cDNA 330 366 ( 37 n); score: 0.585 Intron 2 60143 61822 (1680 n); Pd: 0.000 (s: 0.59), Pa: 0.957 (s: 0.78) Exon 3 61823 62044 ( 222 n); cDNA 367 589 ( 223 n); score: 0.849 MATCH C08SLm0119I05.1+ SGN-E375311- 0.849 273 0.463 C PGS_C08SLm0119I05.1+_SGN-E375311- (59142 59151,60102 60142,61823 62044) Alignment (genomic DNA sequence = upper lines): GGATTTGAAA GTAAGTGATT TTTAGCCTAG CTTGCACATG ACAAATCAAA GATATAAATA 59201 |||||| || GGATTTAAAG .......... .......... .......... .......... .......... 329 AATCTAAAAT AACTAAGTCA AGAGTACAAG CATGTTTGTG TTCTTTTCTT TTTTTCTTTC 59261 .......... .......... .......... .......... .......... .......... 329 CTAAAAGGTG CTCATAGTTG AGTATCATCT TCAACTTCAG ATATGTGCTA TTTTAGCAGC 59321 .......... .......... .......... .......... .......... .......... 329 ATATAAGTGA AGCTCACAGA AACTAAAACC GTTAGCCGAT TTTGATGGTC TAATGGATAC 59381 .......... .......... .......... .......... .......... .......... 329 AACATCCTGA TTCTTTCAGA AGTTCACAAA GTTCTTATTC AAATAAATAA AGCTACATTT 59441 .......... .......... .......... .......... .......... .......... 329 TTCACAAAGT ACAATCTTCA AGAAAATGAC TTTATCAAAC AAACTAAATA AATTACGGCT 59501 .......... .......... .......... .......... .......... .......... 329 AAATAAAAAG CTTTAAACCT AAACCCAAGA TAAAAGGCAT GTAATTTGAA GTTCCTGTTA 59561 .......... .......... .......... .......... .......... .......... 329 AATGGAATGT AGCTTATTGA CTGCTGTGTG CATACTTTGA AGGGAAATGA ACAAGAAAGC 59621 .......... .......... .......... .......... .......... .......... 329 CTTGAAGGTC TGAAAAATAT GTTCATATCA GGGTCTTCGA TTTCTAGAGA CTTTTGGTAC 59681 .......... .......... .......... .......... .......... .......... 329 ACTTATAAGG AGTTATTAGT ATAGGTGTTT GAGAGTTTTT TTAGAGAACC TTTTATTTCT 59741 .......... .......... .......... .......... .......... .......... 329 TGCTTATCTT TGGTTGTGTA GGAGTGTACA ATTTCTTTAA TTTTTCTAAG ACAATGTTAA 59801 .......... .......... .......... .......... .......... .......... 329 TCCTATCCAA ATAATGTATG TTACTAAAGT AAATAAAATC AATATAAATT AAAATTCAAG 59861 .......... .......... .......... .......... .......... .......... 329 AAAGTCGGAA TGTCTTCCTA TCACCATAAC CTTAAAGAGC CAAGGGGATG GGTTTCTTCA 59921 .......... .......... .......... .......... .......... .......... 329 TAGTAAATTG CAATTCTCCA TCCATCACGA TTGAAGAATA GATTGCATTC AATTGTTACC 59981 .......... .......... .......... .......... .......... .......... 329 TAATTCTACA AATACCAATA AAAGTATTTC ACTATAACCA ACAAAAGGTA TAATATCATC 60041 .......... .......... .......... .......... .......... .......... 329 CACTAATTTT TTATTCAACA ATATGATGAG AAGTATAATA CAAACGAAAA TTGTATTCAG 60101 .......... .......... .......... .......... .......... .......... 329 TTCACTAATT GACAATATCC ACACAACACT ATTAAATACT GAACGACACC CATATATTTT 60161 | || | || || | |||| | || ||| |||| | CTTACGAGTT -TTAA-A--G TCACAGCTCT ATTGTTTACT G......... .......... 366 ACGAGCAGTT AAGAGACTTT GATTAACAAA TGATGGGTAG ATGTAGAAGT TAAAATACAG 60221 .......... .......... .......... .......... .......... .......... 366 TGACAACAAC ACCTGAAACA GCTACAGTAC AAGTAGCGTG GTTGTTATCG CTGATTGTCA 60281 .......... .......... .......... .......... .......... .......... 366 GTACCAGAGT TTGATGGAGA ATAAGTGGGA ATGCTCTCCA TCAGCGGTTT ATTGGTGAAG 60341 .......... .......... .......... .......... .......... .......... 366 ATTCTCAACT TTTTTCACTT GAGAGAGAGT TTTGGAAGAT TTCGCGGACA ATATCGAGTA 60401 .......... .......... .......... .......... .......... .......... 366 ACACAACTTC ACCTTTTCAT ATGCTTTTAA GCTACACTTA TGGGGGTGTT GGATACGGAG 60461 .......... .......... .......... .......... .......... .......... 366 AAAACATTTC AATTTTACTG TTTCATTCCA AAATTTAGAT GGGTAATTGA ATCCAGACTA 60521 .......... .......... .......... .......... .......... .......... 366 CCATGTTTGA TAACTCATCC ATAACCTCTA GCAATTGATA TGGGGTGTAT GCTTATGAAT 60581 .......... .......... .......... .......... .......... .......... 366 AAACAAACAC AATTGTGAAC TCTTTAGTAG ATCAGCCAGT AATTAGTAAT ATATATTATT 60641 .......... .......... .......... .......... .......... .......... 366 TTCTTCTAAA TAAATCAACA ATTACATCAG TCATGTAGTT CAGTCGTAAA TTTGGAAGAG 60701 .......... .......... .......... .......... .......... .......... 366 AGCATACCTG GAATTATGAA GACTTGTGAA TCGATTTACT GAAGTTGGAA CAAAAGGGAT 60761 .......... .......... .......... .......... .......... .......... 366 GGAATAAAGG GTGCTTTTTT GCCGAGTGTT TGTGCTTGGA AAATGAGTTA GAAATCTGTT 60821 .......... .......... .......... .......... .......... .......... 366 GTTTGGAGTG TGAAAGACGG CAGACGGATG GTTCTAGAAG ATGGAAGATC GATGGGTATT 60881 .......... .......... .......... .......... .......... .......... 366 TGGAATTGAA ATCCGTTCAT TTGTTAGTGT GAAATTACAG TGTTACCCTT GATGGAAGAT 60941 .......... .......... .......... .......... .......... .......... 366 CGATGGGTCC AGAAATCTGC ATTTGAAATT GAAATCTGTA TATTTATTAG TGTGAAATTA 61001 .......... .......... .......... .......... .......... .......... 366 CAGTGTTGCC CTTGATGGAA GATCGATGGT CCAAAAATCT GCATTTGGAA TTGAAATCTA 61061 .......... .......... .......... .......... .......... .......... 366 TCCATTTATT AGTGTGAAAT TACAGTGTTG CCCTTGATCG CCTCCTCAAC GTATAATATC 61121 .......... .......... .......... .......... .......... .......... 366 ATAAGTTGGT AGAAAATGAT TGGCAAGGCA TCTGAACTAA TCATGTGAGC GGTTAGACAC 61181 .......... .......... .......... .......... .......... .......... 366 TTCACATGTT ATAACTTGCT CTATCGATAA ATAGTTGTCC ACTATTGATT TAGCATATTC 61241 .......... .......... .......... .......... .......... .......... 366 TTAAAGAAAT AATAAAAGTA ATTTTATTAT TTTATTTTTA TTAAATTTAA TTCTTTTAAT 61301 .......... .......... .......... .......... .......... .......... 366 ATGTATTAGA TGTTAAATAA TATTTAATAG CAATAATAAA ATAGATAAAA AAAATAAATT 61361 .......... .......... .......... .......... .......... .......... 366 ATCTTTTAAT TTTTTAAACT GAACAAATAT TGTTGAACAA TTATTTTTAA TATAGTAAAT 61421 .......... .......... .......... .......... .......... .......... 366 AACTATTATC GAACATGAAG AATATACAAT AGATACTTGT ATCCAAACTT GTGATATTTC 61481 .......... .......... .......... .......... .......... .......... 366 CAACAATTGA GCTATAAATG TAGTTGTCAT TCCATTTTAA TTAAAAAAAA TTGACTCTTT 61541 .......... .......... .......... .......... .......... .......... 366 CTAAAAATTT ATTACAATTA TTCAACACTA TGAGATAGAA AAAAATTGAC TCTTTGTAAA 61601 .......... .......... .......... .......... .......... .......... 366 TGACAAGTAA ATCACCAAGC TTTTAAAGTA TATTGTCTTT GATTGAGAAT TAATAGGGCT 61661 .......... .......... .......... .......... .......... .......... 366 TGCTAGTGTT ATATTATTTG GATCACGTGT ATATTTAATA GGTGTTATAG GCCGATCAAA 61721 .......... .......... .......... .......... .......... .......... 366 TAAAAAAATA ATATTCTCTC CGTTTAAAAA AGAATGACCT TTTTTTTGTC TGTTTTAAAA 61781 .......... .......... .......... .......... .......... .......... 366 TGAATGACAT CTTTCTTTTT TTTGTAACGT TTTAAAATCA GCTTTCTACC AGGAGCGATT 61841 ||| | | ||||||| | .......... .......... .......... .......... .GGTTCGAAC AGGAGCGGCT 385 CAAGCATATT AATGGCCTAA AACAAAAATC AAACGGGGCC TTTAAATTTG AATTTATCAA 61901 |||| ||||| | |||| ||| | | |||||| |||||||| | ||||| ||| || |||| || CAAGAATATT AGTGGCATAA AGCGAAAATC AAACGGGGTC -TTAAACTTG AA-TTATTAA 443 TAACTTTTAT ATAATTGATT TCTTCTAATT TTCAATTGAT AATATAATCA TTCTTA--TT 61959 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||| || TAACTTTTAT ATAATTGATT TCTTCTAGTT TTCAATTGAT AATATAATCG TTCTTATCTT 503 TTAAATTATT TTTAATGAGA TATAGTACTC CAAATATGTC AAATTTCTTC TAATAATTTC 62019 |||||||||| ||| |||||| |||||||||| ||||| || |||||||||| ||||||| | TTAAATTATT TTTCATGAGA TATAGTACTC TAAATACATC AAATTTCTTC CAATAATTCC 563 TTCA-TTTTC ATGAAAAGTT TACTTT 62044 || | ||||| ||||||| || |||||| TTAATTTTTC ATGAAAAATT TACTTT 589 hqPGS_C08SLm0119I05.1+_SGN-E375311- (61823 62044) ******************************************************************************** EST sequence 64 +strand 754 n (File: SGN-E211668+) 1 GATTATGAAA TGCTTGAGAA AACAGCGAAT CTTTTTCGCC CAAAGCTTAT TATTGCTGGT 61 GCAAGTGCAT ATCCGCGTGA TTTTGATTAT CCTCGTTTGA GAAAGATAGC AGATGCTGTT 121 GGAGCTTTCC TAATGATGGA TATGGCTCAT ATCAGTGGGC TTGTAGCTGC TTCTGTACTT 181 GCTAATCCAT TTGAATACTG TGACATTGTT ACTACTACTA CTCACAAGTC TCTTAGAGGT 241 CCTAGAGGTG GAATGATCTT CTTCAAAAAA GATCCAGTTC TGGGAATGGA TCTTGAATCT 301 GCCATAAACA ATGCTGTTTT TCCTGGTTTG CAGGGTGGTC CTCATAATCA CACAATTGGA 361 GGACTAGCTG TTTGCTTGAA GCATGCCAAA TCACCTGAAT TTAAGGTTTA TCAGAACCAG 421 GTGGTTGCCA ACTGTAGAGC TCTTGCAAGC CGATTAATGG AATTAGGCTA CAAGCTGGTC 481 TCAGGAGGGA GCGACAATCA TTTGGTTCTT GTGGATTTGC GGCCCATGGG AATTGATGGT 541 GCTAGAGTGG AGAAAATACT CGACATGGCA TCAATCACTC TCAATAAGAA TTCAGTGCCT 601 GGTGATAAAA GCGCACTAGT ACCGGGTGGC ATCCGCATAG GCTCACCAGC CATGACCACT 661 CGAGGTTTTA CAGAGAAGGA ATTTGTATCA GTTGCAGATT TTATTCACGA GGGTGTGCAA 721 ATTACCCTTG AAAGCAAGAA GTCCGTCTCT ACTA Predicted gene structure (within gDNA segment 67464 to 64583): Exon 1 66864 66760 ( 105 n); cDNA 1 105 ( 105 n); score: 1.000 Intron 1 66759 66663 ( 97 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 66662 66540 ( 123 n); cDNA 106 228 ( 123 n); score: 1.000 Intron 2 66539 66207 ( 333 n); Pd: 0.998 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 66206 66102 ( 105 n); cDNA 229 333 ( 105 n); score: 1.000 Intron 3 66101 65934 ( 168 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 65933 65847 ( 87 n); cDNA 334 420 ( 87 n); score: 1.000 Intron 4 65846 65770 ( 77 n); Pd: 0.980 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 5 65769 65662 ( 108 n); cDNA 421 528 ( 108 n); score: 1.000 Intron 5 65661 65496 ( 166 n); Pd: 0.997 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 65495 65423 ( 73 n); cDNA 529 601 ( 73 n); score: 1.000 Intron 6 65422 65346 ( 77 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 65345 65193 ( 153 n); cDNA 602 754 ( 153 n); score: 0.987 MATCH C08SLm0119I05.1- SGN-E211668+ 0.997 754 1.000 C PGS_C08SLm0119I05.1-_SGN-E211668+ (66864 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65193) Alignment (genomic DNA sequence = upper lines): GATTATGAAA TGCTTGAGAA AACAGCGAAT CTTTTTCGCC CAAAGCTTAT TATTGCTGGT 66805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTATGAAA TGCTTGAGAA AACAGCGAAT CTTTTTCGCC CAAAGCTTAT TATTGCTGGT 60 GCAAGTGCAT ATCCGCGTGA TTTTGATTAT CCTCGTTTGA GAAAGGTACA ATTATATAAT 66745 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCAAGTGCAT ATCCGCGTGA TTTTGATTAT CCTCGTTTGA GAAAG..... .......... 105 AACTGGATCT CTACGTGTTA ACATCTTCTT TCTGTTTTCT GTGTTTGGTA TCTAATATTA 66685 .......... .......... .......... .......... .......... .......... 105 TGTTTCTGGT ATATCCTGGT AGATAGCAGA TGCTGTTGGA GCTTTCCTAA TGATGGATAT 66625 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ATAGCAGA TGCTGTTGGA GCTTTCCTAA TGATGGATAT 143 GGCTCATATC AGTGGGCTTG TAGCTGCTTC TGTACTTGCT AATCCATTTG AATACTGTGA 66565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCATATC AGTGGGCTTG TAGCTGCTTC TGTACTTGCT AATCCATTTG AATACTGTGA 203 CATTGTTACT ACTACTACTC ACAAGGTACT GTAATTTCTT GCCAAGCTAA TACTTTTGTT 66505 |||||||||| |||||||||| ||||| CATTGTTACT ACTACTACTC ACAAG..... .......... .......... .......... 228 CTCAGTATAT CCCTCCCTTC CCCGCTCCTT AAAAGAAAGC TAAATAGTCA TACCAGTTAT 66445 .......... .......... .......... .......... .......... .......... 228 ATTTTCATTG CACTTCTCTA TCTTGCCAAT GCGCTTCTTC TGTTAGATCT CCTACATGCA 66385 .......... .......... .......... .......... .......... .......... 228 TCAAGTCTCA TTTTCCTTAG CAATTTTTCA AAGTAAGATA TAAGAGAGTA TACAGTAGAT 66325 .......... .......... .......... .......... .......... .......... 228 AGAGGAACTT TGGGAAGGCT ACTAACTCCT CATCTTTAAA CTCAAATGTT TTAGTAGTTA 66265 .......... .......... .......... .......... .......... .......... 228 CCGATTAATA TTATATTATA TCTGATTAAC TATGCCTAAC TTTGACTTGT CTGTTCAGTC 66205 || .......... .......... .......... .......... .......... ........TC 230 TCTTAGAGGT CCTAGAGGTG GAATGATCTT CTTCAAAAAA GATCCAGTTC TGGGAATGGA 66145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAGAGGT CCTAGAGGTG GAATGATCTT CTTCAAAAAA GATCCAGTTC TGGGAATGGA 290 TCTTGAATCT GCCATAAACA ATGCTGTTTT TCCTGGTTTG CAGGTCAGTT CATTTTCCTT 66085 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTTGAATCT GCCATAAACA ATGCTGTTTT TCCTGGTTTG CAG....... .......... 333 TTGACTGTCC ATGTTGCTCC TTTTGTTTTA TGAAATTTCT TCCTTGATTG CTAGTATCTT 66025 .......... .......... .......... .......... .......... .......... 333 ACCAGAGAAA GAACAGTGTT CTCTTTTGGA CTCTGTAATA TAATCTAGAT TCCGTGAATT 65965 .......... .......... .......... .......... .......... .......... 333 GATCTATCAA TATTATTGTT TTTCTTTGAA GGGTGGTCCT CATAATCACA CAATTGGAGG 65905 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGTGGTCCT CATAATCACA CAATTGGAGG 362 ACTAGCTGTT TGCTTGAAGC ATGCCAAATC ACCTGAATTT AAGGTTTATC AGAACCAGGT 65845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTAGCTGTT TGCTTGAAGC ATGCCAAATC ACCTGAATTT AAGGTTTATC AGAACCAG.. 420 AAGAATTATG GCTTCTTTAC CCAAACACGG GCACCATCTC TTAGAATTTG ACTTCATTTA 65785 .......... .......... .......... .......... .......... .......... 420 ATATTTATCT TGTAGGTGGT TGCCAACTGT AGAGCTCTTG CAAGCCGATT AATGGAATTA 65725 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTGGT TGCCAACTGT AGAGCTCTTG CAAGCCGATT AATGGAATTA 465 GGCTACAAGC TGGTCTCAGG AGGGAGCGAC AATCATTTGG TTCTTGTGGA TTTGCGGCCC 65665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTACAAGC TGGTCTCAGG AGGGAGCGAC AATCATTTGG TTCTTGTGGA TTTGCGGCCC 525 ATGGTGAGTT TTCTCAATTA TGCCTTCTGT TTCCCTTTTA TTGTGTAGCT GGGATGGACT 65605 ||| ATG....... .......... .......... .......... .......... .......... 528 TATATTTTGT TGGTAAACAA AAACAAATTA TACTAACAAC AACAACGATC TATATACTAG 65545 .......... .......... .......... .......... .......... .......... 528 TTTGTTTAAA GTAACCAGCA TAGGTCAACC GTGTTCATTT GTCAATTAGG GAATTGATGG 65485 | |||||||||| .......... .......... .......... .......... .........G GAATTGATGG 539 TGCTAGAGTG GAGAAAATAC TCGACATGGC ATCAATCACT CTCAATAAGA ATTCAGTGCC 65425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAGAGTG GAGAAAATAC TCGACATGGC ATCAATCACT CTCAATAAGA ATTCAGTGCC 599 TGGTGAGTGA AGCTTTTACG CAGTTCATCA TTTTCTTAAT GTTCTTTTTT CATTTACACC 65365 || TG........ .......... .......... .......... .......... .......... 601 GTCAAAATCA AAATTGTAGG TGATAAAAGC GCACTAGTAC CGGGTGGCAT CCGCATAGGC 65305 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGATAAAAGC GCACTAGTAC CGGGTGGCAT CCGCATAGGC 642 TCACCAGCCA TGACCACTCG AGGTTTTACA GAGAAGGAAT TTGTATCAGT TGCAGATTTT 65245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCAGCCA TGACCACTCG AGGTTTTACA GAGAAGGAAT TTGTATCAGT TGCAGATTTT 702 ATTCACGAGG GTGTGCAAAT TACCCTTGAA GCCAAGAAGT CCGTCTCTAC TA 65193 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| || ATTCACGAGG GTGTGCAAAT TACCCTTGAA AGCAAGAAGT CCGTCTCTAC TA 754 hqPGS_C08SLm0119I05.1-_SGN-E211668+ (66864 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65193) ******************************************************************************** EST sequence 98 +strand 580 n (File: SGN-E290328+) 1 TCATATCAGT GGGCTTGTAG CTGCTTCTGT ACTTGCTAAT CCATTTGAAT ACTGTGACAT 61 TGTTACTACT ACTACTCACA AGTCTCTTAG AGGTCCTAGA GGTGGAATGA TCTTCTTCAA 121 AAAAGATCCA GTTCTGGGAA TGGATCTTGA ATCTGCCATA AACAATGCTG TTTTTCCTGG 181 TTTGCAGGGT GGTCCTCATA ATCACACAAT TGGAGGACTA GCTGTTTGCT TGAAGCATGC 241 CAAATCACCT GAATTTAAGG TTTATCAGAA CCAGGTGGTT GCCAACTGTA GAGCTCTTGC 301 AAGCCGATTA ATGGAATTAG GCTACAAGCT GGTCTCAGGA GGGAGCGACA ATCATTTGGT 361 TCTTGTGGAT TTGCGGCCCA TGGGAATTGA TGGTGCTAGA GTGGAGAAAA TACTCGACAT 421 GGCATCAATC ACTCTCAATA AGAATTCAGT GCCTGGTGAT AAAAGCGCAC TAGTACCGGG 481 TGGCATCCGC ATAGGCTCAC CAGCCATGAC CACTCGAGGT TTTACAGAGA AGGAATTTGT 541 ATCAGTTGCA GATTTTATTC ACGAGGGTGT GCAAATTACC Predicted gene structure (within gDNA segment 67221 to 64611): Exon 1 66621 66540 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 66539 66207 ( 333 n); Pd: 0.998 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 66206 66102 ( 105 n); cDNA 83 187 ( 105 n); score: 1.000 Intron 2 66101 65934 ( 168 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 65933 65847 ( 87 n); cDNA 188 274 ( 87 n); score: 1.000 Intron 3 65846 65770 ( 77 n); Pd: 0.980 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 65769 65662 ( 108 n); cDNA 275 382 ( 108 n); score: 1.000 Intron 4 65661 65496 ( 166 n); Pd: 0.997 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 65495 65423 ( 73 n); cDNA 383 455 ( 73 n); score: 1.000 Intron 5 65422 65346 ( 77 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 65345 65221 ( 125 n); cDNA 456 580 ( 125 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E290328+ 1.000 580 1.000 C PGS_C08SLm0119I05.1-_SGN-E290328+ (66621 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65221) Alignment (genomic DNA sequence = upper lines): TCATATCAGT GGGCTTGTAG CTGCTTCTGT ACTTGCTAAT CCATTTGAAT ACTGTGACAT 66562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATCAGT GGGCTTGTAG CTGCTTCTGT ACTTGCTAAT CCATTTGAAT ACTGTGACAT 60 TGTTACTACT ACTACTCACA AGGTACTGTA ATTTCTTGCC AAGCTAATAC TTTTGTTCTC 66502 |||||||||| |||||||||| || TGTTACTACT ACTACTCACA AG........ .......... .......... .......... 82 AGTATATCCC TCCCTTCCCC GCTCCTTAAA AGAAAGCTAA ATAGTCATAC CAGTTATATT 66442 .......... .......... .......... .......... .......... .......... 82 TTCATTGCAC TTCTCTATCT TGCCAATGCG CTTCTTCTGT TAGATCTCCT ACATGCATCA 66382 .......... .......... .......... .......... .......... .......... 82 AGTCTCATTT TCCTTAGCAA TTTTTCAAAG TAAGATATAA GAGAGTATAC AGTAGATAGA 66322 .......... .......... .......... .......... .......... .......... 82 GGAACTTTGG GAAGGCTACT AACTCCTCAT CTTTAAACTC AAATGTTTTA GTAGTTACCG 66262 .......... .......... .......... .......... .......... .......... 82 ATTAATATTA TATTATATCT GATTAACTAT GCCTAACTTT GACTTGTCTG TTCAGTCTCT 66202 ||||| .......... .......... .......... .......... .......... .....TCTCT 87 TAGAGGTCCT AGAGGTGGAA TGATCTTCTT CAAAAAAGAT CCAGTTCTGG GAATGGATCT 66142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGTCCT AGAGGTGGAA TGATCTTCTT CAAAAAAGAT CCAGTTCTGG GAATGGATCT 147 TGAATCTGCC ATAAACAATG CTGTTTTTCC TGGTTTGCAG GTCAGTTCAT TTTCCTTTTG 66082 |||||||||| |||||||||| |||||||||| |||||||||| TGAATCTGCC ATAAACAATG CTGTTTTTCC TGGTTTGCAG .......... .......... 187 ACTGTCCATG TTGCTCCTTT TGTTTTATGA AATTTCTTCC TTGATTGCTA GTATCTTACC 66022 .......... .......... .......... .......... .......... .......... 187 AGAGAAAGAA CAGTGTTCTC TTTTGGACTC TGTAATATAA TCTAGATTCC GTGAATTGAT 65962 .......... .......... .......... .......... .......... .......... 187 CTATCAATAT TATTGTTTTT CTTTGAAGGG TGGTCCTCAT AATCACACAA TTGGAGGACT 65902 || |||||||||| |||||||||| |||||||||| .......... .......... ........GG TGGTCCTCAT AATCACACAA TTGGAGGACT 219 AGCTGTTTGC TTGAAGCATG CCAAATCACC TGAATTTAAG GTTTATCAGA ACCAGGTAAG 65842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGCTGTTTGC TTGAAGCATG CCAAATCACC TGAATTTAAG GTTTATCAGA ACCAG..... 274 AATTATGGCT TCTTTACCCA AACACGGGCA CCATCTCTTA GAATTTGACT TCATTTAATA 65782 .......... .......... .......... .......... .......... .......... 274 TTTATCTTGT AGGTGGTTGC CAACTGTAGA GCTCTTGCAA GCCGATTAAT GGAATTAGGC 65722 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTGGTTGC CAACTGTAGA GCTCTTGCAA GCCGATTAAT GGAATTAGGC 322 TACAAGCTGG TCTCAGGAGG GAGCGACAAT CATTTGGTTC TTGTGGATTT GCGGCCCATG 65662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGCTGG TCTCAGGAGG GAGCGACAAT CATTTGGTTC TTGTGGATTT GCGGCCCATG 382 GTGAGTTTTC TCAATTATGC CTTCTGTTTC CCTTTTATTG TGTAGCTGGG ATGGACTTAT 65602 .......... .......... .......... .......... .......... .......... 382 ATTTTGTTGG TAAACAAAAA CAAATTATAC TAACAACAAC AACGATCTAT ATACTAGTTT 65542 .......... .......... .......... .......... .......... .......... 382 GTTTAAAGTA ACCAGCATAG GTCAACCGTG TTCATTTGTC AATTAGGGAA TTGATGGTGC 65482 |||| |||||||||| .......... .......... .......... .......... ......GGAA TTGATGGTGC 396 TAGAGTGGAG AAAATACTCG ACATGGCATC AATCACTCTC AATAAGAATT CAGTGCCTGG 65422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TAGAGTGGAG AAAATACTCG ACATGGCATC AATCACTCTC AATAAGAATT CAGTGCCTG. 455 TGAGTGAAGC TTTTACGCAG TTCATCATTT TCTTAATGTT CTTTTTTCAT TTACACCGTC 65362 .......... .......... .......... .......... .......... .......... 455 AAAATCAAAA TTGTAGGTGA TAAAAGCGCA CTAGTACCGG GTGGCATCCG CATAGGCTCA 65302 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTGA TAAAAGCGCA CTAGTACCGG GTGGCATCCG CATAGGCTCA 499 CCAGCCATGA CCACTCGAGG TTTTACAGAG AAGGAATTTG TATCAGTTGC AGATTTTATT 65242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCCATGA CCACTCGAGG TTTTACAGAG AAGGAATTTG TATCAGTTGC AGATTTTATT 559 CACGAGGGTG TGCAAATTAC C 65221 |||||||||| |||||||||| | CACGAGGGTG TGCAAATTAC C 580 hqPGS_C08SLm0119I05.1-_SGN-E290328+ (66621 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65221) ******************************************************************************** EST sequence 97 +strand 558 n (File: SGN-E290503+) 1 TTTTTCGCCC AAAGCTTATT ATTGCTGGTG CAAGTGCATA TCCGCGTGAT TTTGATTATC 61 CTCGTTTGAG AAAGATAGCA GATGCTGTTG GAGCTTTCCT AATGATGGAT ATGGCTCATA 121 TCAGTGGGCT TGTAGCTGCT TCTGTACTTG CTAATCCATT TGAATACTGT GACATTGTTA 181 CTACTACTAC TCACAAGTCT CTTAGAGGTC CTAGAGGTGG AATGATCTTC TTCAAAAAAG 241 ATCCAGTTCT GGGAATGGAT CTTGAATCTG CCATAAACAA TGCTGTTTTT CCTGGTTTGC 301 AGGGTGGTCC TCATAATCAC ACAATTGGAG GACTAGCTGT TTGCTTGAAG CATGCCAAAT 361 CACCTGAATT TAAGGTTTAT CAGAACCAGG TGGTTGCCAA CTGTAGAGCT CTTGCAAGCC 421 GATTAATGGA ATTAGGCTAC AAGCTGGTCT CAGGAGGGAG CGACAATCAT TTGGTTCTTG 481 TGGATTTGCG GCCCATGGGA ATTGATGGTG CTAGAGTGGA GAAAATACTC GACATGGCAT 541 CAATCACTCT CAATAAGA Predicted gene structure (within gDNA segment 67433 to 64825): Exon 1 66833 66760 ( 74 n); cDNA 1 74 ( 74 n); score: 1.000 Intron 1 66759 66663 ( 97 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 66662 66540 ( 123 n); cDNA 75 197 ( 123 n); score: 1.000 Intron 2 66539 66207 ( 333 n); Pd: 0.998 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 66206 66102 ( 105 n); cDNA 198 302 ( 105 n); score: 1.000 Intron 3 66101 65934 ( 168 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 65933 65847 ( 87 n); cDNA 303 389 ( 87 n); score: 1.000 Intron 4 65846 65770 ( 77 n); Pd: 0.980 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 5 65769 65662 ( 108 n); cDNA 390 497 ( 108 n); score: 1.000 Intron 5 65661 65496 ( 166 n); Pd: 0.997 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 65495 65435 ( 61 n); cDNA 498 558 ( 61 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E290503+ 1.000 558 1.000 C PGS_C08SLm0119I05.1-_SGN-E290503+ (66833 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65435) Alignment (genomic DNA sequence = upper lines): TTTTTCGCCC AAAGCTTATT ATTGCTGGTG CAAGTGCATA TCCGCGTGAT TTTGATTATC 66774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCGCCC AAAGCTTATT ATTGCTGGTG CAAGTGCATA TCCGCGTGAT TTTGATTATC 60 CTCGTTTGAG AAAGGTACAA TTATATAATA ACTGGATCTC TACGTGTTAA CATCTTCTTT 66714 |||||||||| |||| CTCGTTTGAG AAAG...... .......... .......... .......... .......... 74 CTGTTTTCTG TGTTTGGTAT CTAATATTAT GTTTCTGGTA TATCCTGGTA GATAGCAGAT 66654 ||||||||| .......... .......... .......... .......... .......... .ATAGCAGAT 83 GCTGTTGGAG CTTTCCTAAT GATGGATATG GCTCATATCA GTGGGCTTGT AGCTGCTTCT 66594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTGGAG CTTTCCTAAT GATGGATATG GCTCATATCA GTGGGCTTGT AGCTGCTTCT 143 GTACTTGCTA ATCCATTTGA ATACTGTGAC ATTGTTACTA CTACTACTCA CAAGGTACTG 66534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GTACTTGCTA ATCCATTTGA ATACTGTGAC ATTGTTACTA CTACTACTCA CAAG...... 197 TAATTTCTTG CCAAGCTAAT ACTTTTGTTC TCAGTATATC CCTCCCTTCC CCGCTCCTTA 66474 .......... .......... .......... .......... .......... .......... 197 AAAGAAAGCT AAATAGTCAT ACCAGTTATA TTTTCATTGC ACTTCTCTAT CTTGCCAATG 66414 .......... .......... .......... .......... .......... .......... 197 CGCTTCTTCT GTTAGATCTC CTACATGCAT CAAGTCTCAT TTTCCTTAGC AATTTTTCAA 66354 .......... .......... .......... .......... .......... .......... 197 AGTAAGATAT AAGAGAGTAT ACAGTAGATA GAGGAACTTT GGGAAGGCTA CTAACTCCTC 66294 .......... .......... .......... .......... .......... .......... 197 ATCTTTAAAC TCAAATGTTT TAGTAGTTAC CGATTAATAT TATATTATAT CTGATTAACT 66234 .......... .......... .......... .......... .......... .......... 197 ATGCCTAACT TTGACTTGTC TGTTCAGTCT CTTAGAGGTC CTAGAGGTGG AATGATCTTC 66174 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TCT CTTAGAGGTC CTAGAGGTGG AATGATCTTC 230 TTCAAAAAAG ATCCAGTTCT GGGAATGGAT CTTGAATCTG CCATAAACAA TGCTGTTTTT 66114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAAAAG ATCCAGTTCT GGGAATGGAT CTTGAATCTG CCATAAACAA TGCTGTTTTT 290 CCTGGTTTGC AGGTCAGTTC ATTTTCCTTT TGACTGTCCA TGTTGCTCCT TTTGTTTTAT 66054 |||||||||| || CCTGGTTTGC AG........ .......... .......... .......... .......... 302 GAAATTTCTT CCTTGATTGC TAGTATCTTA CCAGAGAAAG AACAGTGTTC TCTTTTGGAC 65994 .......... .......... .......... .......... .......... .......... 302 TCTGTAATAT AATCTAGATT CCGTGAATTG ATCTATCAAT ATTATTGTTT TTCTTTGAAG 65934 .......... .......... .......... .......... .......... .......... 302 GGTGGTCCTC ATAATCACAC AATTGGAGGA CTAGCTGTTT GCTTGAAGCA TGCCAAATCA 65874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTCCTC ATAATCACAC AATTGGAGGA CTAGCTGTTT GCTTGAAGCA TGCCAAATCA 362 CCTGAATTTA AGGTTTATCA GAACCAGGTA AGAATTATGG CTTCTTTACC CAAACACGGG 65814 |||||||||| |||||||||| ||||||| CCTGAATTTA AGGTTTATCA GAACCAG... .......... .......... .......... 389 CACCATCTCT TAGAATTTGA CTTCATTTAA TATTTATCTT GTAGGTGGTT GCCAACTGTA 65754 |||||| |||||||||| .......... .......... .......... .......... ....GTGGTT GCCAACTGTA 405 GAGCTCTTGC AAGCCGATTA ATGGAATTAG GCTACAAGCT GGTCTCAGGA GGGAGCGACA 65694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCTTGC AAGCCGATTA ATGGAATTAG GCTACAAGCT GGTCTCAGGA GGGAGCGACA 465 ATCATTTGGT TCTTGTGGAT TTGCGGCCCA TGGTGAGTTT TCTCAATTAT GCCTTCTGTT 65634 |||||||||| |||||||||| |||||||||| || ATCATTTGGT TCTTGTGGAT TTGCGGCCCA TG........ .......... .......... 497 TCCCTTTTAT TGTGTAGCTG GGATGGACTT ATATTTTGTT GGTAAACAAA AACAAATTAT 65574 .......... .......... .......... .......... .......... .......... 497 ACTAACAACA ACAACGATCT ATATACTAGT TTGTTTAAAG TAACCAGCAT AGGTCAACCG 65514 .......... .......... .......... .......... .......... .......... 497 TGTTCATTTG TCAATTAGGG AATTGATGGT GCTAGAGTGG AGAAAATACT CGACATGGCA 65454 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GG AATTGATGGT GCTAGAGTGG AGAAAATACT CGACATGGCA 539 TCAATCACTC TCAATAAGA 65435 |||||||||| ||||||||| TCAATCACTC TCAATAAGA 558 hqPGS_C08SLm0119I05.1-_SGN-E290503+ (66833 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65435) ******************************************************************************** EST sequence 109 +strand 655 n (File: SGN-E347645+) 1 TTGCCTCATG GGGGTCATTT GTCCCATGGA TTCATGACTC CTAAAAGACG AGTTTCAGGC 61 ACATCTATTT ACTTTGAGTC CATGCCTTAC CGCCTTGATG AATCTTCAGG ACTTGTTGAT 121 TATGACATGC TTGAGAAAAC TGCAACCCTT TTTCGGCCAA AACTTATTAT TGCTGGTGCT 181 AGTGCATATC CACGAGATTT TGATTATCCT CGCATGAGAA AGATAGCAGA TGCTGTTGGA 241 GCCTTTCTCA TGATGGATAT GGCTCACATT AGTGGGCTTG TTGCCGCCTC TGTAGTTGCT 301 AATCCATTTG AATACTGTGA CATTGTTACC ACAACAACTC ACAAGTCTCT AAGAGGTCCT 361 AGAGGAGGAA TGATCTTCTT CAAGAAAGAT CCTGTCCTAG GCGTTGATTT GGAATCTGCC 421 ATCAACAATG CTGTTTTTCC TGGCTTGCAG GGTGGTCCAC ACAATCACAC AATTGGAGGA 481 CTAGCTGTTT GCTTGAAGCA TGCCAAATCA CCTGATTTCA AGGCTTATCA GAACAAGGTG 541 GTCTCTAACT GTAGAGCTCT TGCAAGCCGG TTAACGGAGT TGGGGTACAA GCTGGTCTCT 601 GGAGGAACTG ANCATCATTT GGTCCTAGTT GATCTTAGGC CCCTTGGTAC TGATG Predicted gene structure (within gDNA segment 69039 to 63859): Exon 1 67058 66950 ( 109 n); cDNA 1 109 ( 109 n); score: 0.881 Intron 1 66949 66873 ( 77 n); Pd: 0.920 (s: 0.88), Pa: 0.992 (s: 0.80) Exon 2 66872 66760 ( 113 n); cDNA 110 222 ( 113 n); score: 0.858 Intron 2 66759 66663 ( 97 n); Pd: 0.997 (s: 0.90), Pa: 0.999 (s: 0.90) Exon 3 66662 66540 ( 123 n); cDNA 223 345 ( 123 n); score: 0.902 Intron 3 66539 66207 ( 333 n); Pd: 0.998 (s: 0.94), Pa: 0.996 (s: 0.92) Exon 4 66206 66102 ( 105 n); cDNA 346 450 ( 105 n); score: 0.876 Intron 4 66101 65934 ( 168 n); Pd: 1.000 (s: 0.86), Pa: 0.996 (s: 0.96) Exon 5 65933 65847 ( 87 n); cDNA 451 537 ( 87 n); score: 0.931 Intron 5 65846 65770 ( 77 n); Pd: 0.980 (s: 0.92), Pa: 0.982 (s: 0.84) Exon 6 65769 65662 ( 108 n); cDNA 538 645 ( 108 n); score: 0.796 Intron 6 65661 65496 ( 166 n); Pd: 0.997 (s: 0.72), Pa: 0.994 (s: 0) Exon 7 65495 65486 ( 10 n); cDNA 646 655 ( 10 n); score: 0.800 MATCH C08SLm0119I05.1- SGN-E347645+ 0.873 655 1.000 C PGS_C08SLm0119I05.1-_SGN-E347645+ (67058 66950,66872 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65486) Alignment (genomic DNA sequence = upper lines): TTACCTCATG GTGGCCACTT GTCCCATGGA TTTATGACTC CAAAAAGACG GGTTTCAGGC 66999 || ||||||| | || || || |||||||||| || ||||||| | |||||||| ||||||||| TTGCCTCATG GGGGTCATTT GTCCCATGGA TTCATGACTC CTAAAAGACG AGTTTCAGGC 60 ACCTCGATTT ACTTTGAATC CATGCCTTAT CGACTTGATG AATCTACAGG TAACAACAGA 66939 || || |||| ||||||| || ||||||||| || ||||||| ||||| ||| ACATCTATTT ACTTTGAGTC CATGCCTTAC CGCCTTGATG AATCTTCAG. .......... 109 GGGCCACTTT AACATGTTGC ATTTGGACTG TTCAGCTGAT TGGAAGTCTG TTTTAATTCT 66879 .......... .......... .......... .......... .......... .......... 109 ACACAGGTAT TCTCGATTAT GAAATGCTTG AGAAAACAGC GAATCTTTTT CGCCCAAAGC 66819 | | | | |||||| || ||||||| ||||||| || | |||||| || ||||| | ......GACT TGTTGATTAT GACATGCTTG AGAAAACTGC AACCCTTTTT CGGCCAAAAC 163 TTATTATTGC TGGTGCAAGT GCATATCCGC GTGATTTTGA TTATCCTCGT TTGAGAAAGG 66759 |||||||||| |||||| ||| |||||||| | | |||||||| ||||||||| |||||||| TTATTATTGC TGGTGCTAGT GCATATCCAC GAGATTTTGA TTATCCTCGC ATGAGAAAG. 222 TACAATTATA TAATAACTGG ATCTCTACGT GTTAACATCT TCTTTCTGTT TTCTGTGTTT 66699 .......... .......... .......... .......... .......... .......... 222 GGTATCTAAT ATTATGTTTC TGGTATATCC TGGTAGATAG CAGATGCTGT TGGAGCTTTC 66639 |||| |||||||||| |||||| || .......... .......... .......... ......ATAG CAGATGCTGT TGGAGCCTTT 246 CTAATGATGG ATATGGCTCA TATCAGTGGG CTTGTAGCTG CTTCTGTACT TGCTAATCCA 66579 || ||||||| |||||||||| || |||||| ||||| || | | |||||| | |||||||||| CTCATGATGG ATATGGCTCA CATTAGTGGG CTTGTTGCCG CCTCTGTAGT TGCTAATCCA 306 TTTGAATACT GTGACATTGT TACTACTACT ACTCACAAGG TACTGTAATT TCTTGCCAAG 66519 |||||||||| |||||||||| ||| || || ||||||||| TTTGAATACT GTGACATTGT TACCACAACA ACTCACAAG. .......... .......... 345 CTAATACTTT TGTTCTCAGT ATATCCCTCC CTTCCCCGCT CCTTAAAAGA AAGCTAAATA 66459 .......... .......... .......... .......... .......... .......... 345 GTCATACCAG TTATATTTTC ATTGCACTTC TCTATCTTGC CAATGCGCTT CTTCTGTTAG 66399 .......... .......... .......... .......... .......... .......... 345 ATCTCCTACA TGCATCAAGT CTCATTTTCC TTAGCAATTT TTCAAAGTAA GATATAAGAG 66339 .......... .......... .......... .......... .......... .......... 345 AGTATACAGT AGATAGAGGA ACTTTGGGAA GGCTACTAAC TCCTCATCTT TAAACTCAAA 66279 .......... .......... .......... .......... .......... .......... 345 TGTTTTAGTA GTTACCGATT AATATTATAT TATATCTGAT TAACTATGCC TAACTTTGAC 66219 .......... .......... .......... .......... .......... .......... 345 TTGTCTGTTC AGTCTCTTAG AGGTCCTAGA GGTGGAATGA TCTTCTTCAA AAAAGATCCA 66159 ||||| || |||||||||| || ||||||| |||||||||| |||||||| .......... ..TCTCTAAG AGGTCCTAGA GGAGGAATGA TCTTCTTCAA GAAAGATCCT 393 GTTCTGGGAA TGGATCTTGA ATCTGCCATA AACAATGCTG TTTTTCCTGG TTTGCAGGTC 66099 || || || | ||| | || ||||||||| |||||||||| |||||||||| |||||| GTCCTAGGCG TTGATTTGGA ATCTGCCATC AACAATGCTG TTTTTCCTGG CTTGCAG... 450 AGTTCATTTT CCTTTTGACT GTCCATGTTG CTCCTTTTGT TTTATGAAAT TTCTTCCTTG 66039 .......... .......... .......... .......... .......... .......... 450 ATTGCTAGTA TCTTACCAGA GAAAGAACAG TGTTCTCTTT TGGACTCTGT AATATAATCT 65979 .......... .......... .......... .......... .......... .......... 450 AGATTCCGTG AATTGATCTA TCAATATTAT TGTTTTTCTT TGAAGGGTGG TCCTCATAAT 65919 ||||| ||| || ||| .......... .......... .......... .......... .....GGTGG TCCACACAAT 465 CACACAATTG GAGGACTAGC TGTTTGCTTG AAGCATGCCA AATCACCTGA ATTTAAGGTT 65859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||| | CACACAATTG GAGGACTAGC TGTTTGCTTG AAGCATGCCA AATCACCTGA TTTCAAGGCT 525 TATCAGAACC AGGTAAGAAT TATGGCTTCT TTACCCAAAC ACGGGCACCA TCTCTTAGAA 65799 ||||||||| || TATCAGAACA AG........ .......... .......... .......... .......... 537 TTTGACTTCA TTTAATATTT ATCTTGTAGG TGGTTGCCAA CTGTAGAGCT CTTGCAAGCC 65739 | |||| | || |||||||||| |||||||||| .......... .......... .........G TGGTCTCTAA CTGTAGAGCT CTTGCAAGCC 568 GATTAATGGA ATTAGGCTAC AAGCTGGTCT CAGGAGGGAG CGACAATCAT TTGGTTCTTG 65679 | |||| ||| || || ||| |||||||||| | ||||| | || ||||| ||||| || | GGTTAACGGA GTTGGGGTAC AAGCTGGTCT CTGGAGGAAC TGANCATCAT TTGGTCCTAG 628 TGGATTTGCG GCCCATGGTG AGTTTTCTCA ATTATGCCTT CTGTTTCCCT TTTATTGTGT 65619 | ||| | | |||| | TTGATCTTAG GCCCCTT... .......... .......... .......... .......... 645 AGCTGGGATG GACTTATATT TTGTTGGTAA ACAAAAACAA ATTATACTAA CAACAACAAC 65559 .......... .......... .......... .......... .......... .......... 645 GATCTATATA CTAGTTTGTT TAAAGTAACC AGCATAGGTC AACCGTGTTC ATTTGTCAAT 65499 .......... .......... .......... .......... .......... .......... 645 TAGGGAATTG ATG 65486 || | || ||| ...GGTACTG ATG 655 hqPGS_C08SLm0119I05.1-_SGN-E347645+ (67058 66950,66872 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65486) ******************************************************************************** EST sequence 59 -strand 427 n (File: SGN-E216217-) 1 ACTCCAAGAT TTCATGAAGG TTGTTACATC CCCCAAATTT TAGTTTAATG GATAAGGTGT 61 TGGACTTGCA AAAAAGAGTC AAAGCTTTGA CGTCCCAGTA TCCTTTGCCT GGTTTATGAA 121 ATAAAGGCCA AATTGCCTAA TGGATGATAA TTACATGCAA GCTAACCCTT TCGTCCTACT 181 GAATTTTGCA ATGTGTTGTT TAGAATACCT GAAGATCATC TATGTTTCTT CTCCTGGGAA 241 ATGTAGCAGA CTCATAATCC ATGGCTGTTG CAAAAACAAT TGAATCAATT TCGAAACTAT 301 ATCATGGAAA TTGTAGTTGA GTTCAGTCAA TTTGTTGGAA TTTGAATATC TACAATCCTA 361 CATATGTGAT TTCCCAGTAA ATGTCATGAG GCAGCGACAC AGTCGGTTTT TTTAGTAAAA 421 AAAAAAA Predicted gene structure (within gDNA segment 65798 to 63911): Exon 1 65188 64784 ( 405 n); cDNA 1 406 ( 406 n); score: 0.977 PPA cDNA 417 427 MATCH C08SLm0119I05.1- SGN-E216217- 0.977 405 0.948 C PGS_C08SLm0119I05.1-_SGN-E216217- (65188 64784) Alignment (genomic DNA sequence = upper lines): ACTCCAAGAT TTCATGAAGG TTGTTACAT- CCCCAGATTT TAGTTTGATG GATAAGGTGT 65130 |||||||||| |||||||||| ||||||||| ||||| |||| |||||| ||| |||||||||| ACTCCAAGAT TTCATGAAGG TTGTTACATC CCCCAAATTT TAGTTTAATG GATAAGGTGT 60 TGGACTTGCA AAAAAGAGTC GAAGCTTTGA CGTCCCAGTA TCCTTTGCCT GGTTTATGAA 65070 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGGACTTGCA AAAAAGAGTC AAAGCTTTGA CGTCCCAGTA TCCTTTGCCT GGTTTATGAA 120 ATGAAGGCCA AATTGCCTGA TGGATGATAA TTACATGCAA GCTAACCCTT TCGTCCTACT 65010 || ||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGGCCA AATTGCCTAA TGGATGATAA TTACATGCAA GCTAACCCTT TCGTCCTACT 180 GAATTTTGCA ATGTGTTGTT TAGAATACCT GAAGATCATC TATGTTTCTT CTCCTGGGAA 64950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTTGCA ATGTGTTGTT TAGAATACCT GAAGATCATC TATGTTTCTT CTCCTGGGAA 240 ATGTAGCAGA CTCATAATCC ATGGCTGTTG CAAAAACAAT TGAATCAATT TCGAAACTAT 64890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCAGA CTCATAATCC ATGGCTGTTG CAAAAACAAT TGAATCAATT TCGAAACTAT 300 ATCATGGAAA TTGTAGTTGA GTTCAGTCAA TTTGTTGGAA TTTGAATATC TACAATCCTA 64830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATGGAAA TTGTAGTTGA GTTCAGTCAA TTTGTTGGAA TTTGAATATC TACAATCCTA 360 CATATGTGAT TTCACAGTAA ATGTCATGAG GCAGCGACAG AGTCGG 64784 |||||||||| ||| |||||| |||||||||| ||||||||| |||||| CATATGTGAT TTCCCAGTAA ATGTCATGAG GCAGCGACAC AGTCGG 406 hqPGS_C08SLm0119I05.1-_SGN-E216217- (65188 64784) ******************************************************************************** EST sequence 67 +strand 519 n (File: SGN-E203041+) 1 GCACGAGTTT TCTTCACCTT GTGTTGTTCC TATATATTCC CAGAGTTCTA CAAACGCAAA 61 ACTGAAAATC TAGTGAAATT TCAATAAGAA AACTGAATTT TGAATTGAAG GGTTGCTGTT 121 AATTAGTTGC ATCATGGAAG CTTGTTGTGG AGCTGCGGTT ATGAGTTCTC TTCAGCAGCC 181 TGTTTGGGTT AAAGGGTCAG CTTTTCCTTC AAAAGGGGTT GCTGGTATTA ATGTAAATTC 241 GAGTCGGGTA AAGTTATGCT CTGTCAAGCC CTGTAGAGCA ACTCCAACTG AATGGAGCTT 301 GATAACAGAA AGGCCTACTT CTTCTGCTCC TGAAGGTGCT GGGAGCAGCT TTGAAGACTA 361 TGGGTTGCAT GAAGCTGATC CTGATGTTCG TACTATTATT GACAAAGAGA AGCAGCGTCA 421 GTTTAGGAGC TTAGAACTTA TTGCCTCTGA GAATTTCACA TCTCGAGCAG TGATGGAAGC 481 AGTTGGTTCT TGCCTTACCA ACAAATATTC TGAAGGGCT Predicted gene structure (within gDNA segment 69622 to 66831): Exon 1 68952 68872 ( 81 n); cDNA 8 88 ( 81 n); score: 1.000 Intron 1 68871 68786 ( 86 n); Pd: 0.840 (s: 1.00), Pa: 0.859 (s: 1.00) Exon 2 68785 68539 ( 247 n); cDNA 89 335 ( 247 n); score: 1.000 Intron 2 68538 67625 ( 914 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 67624 67441 ( 184 n); cDNA 336 519 ( 184 n); score: 1.000 MATCH C08SLm0119I05.1- SGN-E203041+ 1.000 512 0.987 C PGS_C08SLm0119I05.1-_SGN-E203041+ (68952 68872,68785 68539,67624 67441) Alignment (genomic DNA sequence = upper lines): TTTTCTTCAC CTTGTGTTGT TCCTATATAT TCCCAGAGTT CTACAAACGC AAAACTGAAA 68893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTCAC CTTGTGTTGT TCCTATATAT TCCCAGAGTT CTACAAACGC AAAACTGAAA 67 ATCTAGTGAA ATTTCAATAA GGTTAAACGA TTTATAATTC TTGTAAAAAA TCTTCAGTTG 68833 |||||||||| |||||||||| | ATCTAGTGAA ATTTCAATAA G......... .......... .......... .......... 88 AATCCCCTGT TTCCTAGTTA CAATCTTTTT CTTCTTCCTA TTTGCAGAAA ACTGAATTTT 68773 ||| |||||||||| .......... .......... .......... .......... .......AAA ACTGAATTTT 101 GAATTGAAGG GTTGCTGTTA ATTAGTTGCA TCATGGAAGC TTGTTGTGGA GCTGCGGTTA 68713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGAAGG GTTGCTGTTA ATTAGTTGCA TCATGGAAGC TTGTTGTGGA GCTGCGGTTA 161 TGAGTTCTCT TCAGCAGCCT GTTTGGGTTA AAGGGTCAGC TTTTCCTTCA AAAGGGGTTG 68653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTCTCT TCAGCAGCCT GTTTGGGTTA AAGGGTCAGC TTTTCCTTCA AAAGGGGTTG 221 CTGGTATTAA TGTAAATTCG AGTCGGGTAA AGTTATGCTC TGTCAAGCCC TGTAGAGCAA 68593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTATTAA TGTAAATTCG AGTCGGGTAA AGTTATGCTC TGTCAAGCCC TGTAGAGCAA 281 CTCCAACTGA ATGGAGCTTG ATAACAGAAA GGCCTACTTC TTCTGCTCCT GAAGGTAATT 68533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CTCCAACTGA ATGGAGCTTG ATAACAGAAA GGCCTACTTC TTCTGCTCCT GAAG...... 335 TGTAAATTTT GTTGTTATGT TCTATATAGT ATATGTATAT GAAAAATGTT CTTTATAACT 68473 .......... .......... .......... .......... .......... .......... 335 ATTTTTGGAT GTATAAAAAT CTGTTTTTTA TTGGGGGAAG AGGTTTTTTT TTGGTTTGGT 68413 .......... .......... .......... .......... .......... .......... 335 CAGATTCTCC TTTAGTACAA ATGGTGGTTG ATGGATCCTT GATTATGTTT TTTATGAGGA 68353 .......... .......... .......... .......... .......... .......... 335 GTCCTAGGAG AGTTAGCATT GGTGAGTTTG GTTTGGTTTT ATGTATCATG GGTTTATCGG 68293 .......... .......... .......... .......... .......... .......... 335 GTTTTCGGTT TCAAATACAG TAAACTAATA AAGATATGTT TTATCTGTTT TCAGTTTATT 68233 .......... .......... .......... .......... .......... .......... 335 AGTTTTTGAT TTTCATGGTT TGATTTTCGA TTTAACCATA AGAAAATGCA ATGTTCATAA 68173 .......... .......... .......... .......... .......... .......... 335 AACAAATATA TGACTTCTCC ATACAATAGT GTAACTTTAG AGAAGGCTCA TAAAACAGAT 68113 .......... .......... .......... .......... .......... .......... 335 TCAGTAGTAA TAACTTACCT GAAAAGAAGT TTTCTTATTC TCATGAAAGT AATAGGTTTT 68053 .......... .......... .......... .......... .......... .......... 335 GACATTTTGT ACAATGTGAT GTTTTGAATT CAAAGTTAAT GTGAAGTGTG AATTGAAGGC 67993 .......... .......... .......... .......... .......... .......... 335 TGAAGGGCAA AGGCACTAAT ATTTAATTTA ATATTTATAT AGGGGTAAAT TGTAAATTAT 67933 .......... .......... .......... .......... .......... .......... 335 TACAATCATT TACCAACGAG AGATATGAAG AGTCATCCAC CTTGTTATAC AGCTCCTAGG 67873 .......... .......... .......... .......... .......... .......... 335 AACAAAATGC AGAGACTATA ATTGATGTCA GAACTGATTC TGGTTATACA TTTTACTTTG 67813 .......... .......... .......... .......... .......... .......... 335 TTTTTCATTT CCCAGCGGAG ATGTAAAAAC TAATGGGTAC GGAATTCAAT TATGATGGAC 67753 .......... .......... .......... .......... .......... .......... 335 GAGGAATGTA AAAACTAACT GGGACTTAAT CCATTGCTGG TGGTTACATA TCCCTCGTGA 67693 .......... .......... .......... .......... .......... .......... 335 ACGTGTATGA TGATATTTAC TTTTTAGACT TTCTTCATTT ACTCATTGGT GTCTGCTGCA 67633 .......... .......... .......... .......... .......... .......... 335 TTCTCTAGGT GCTGGGAGCA GCTTTGAAGA CTATGGGTTG CATGAAGCTG ATCCTGATGT 67573 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT GCTGGGAGCA GCTTTGAAGA CTATGGGTTG CATGAAGCTG ATCCTGATGT 387 TCGTACTATT ATTGACAAAG AGAAGCAGCG TCAGTTTAGG AGCTTAGAAC TTATTGCCTC 67513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTACTATT ATTGACAAAG AGAAGCAGCG TCAGTTTAGG AGCTTAGAAC TTATTGCCTC 447 TGAGAATTTC ACATCTCGAG CAGTGATGGA AGCAGTTGGT TCTTGCCTTA CCAACAAATA 67453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAATTTC ACATCTCGAG CAGTGATGGA AGCAGTTGGT TCTTGCCTTA CCAACAAATA 507 TTCTGAAGGG CT 67441 |||||||||| || TTCTGAAGGG CT 519 hqPGS_C08SLm0119I05.1-_SGN-E203041+ (68952 68872,68785 68539,67624 67441) ******************************************************************************** EST sequence 68 +strand 306 n (File: SGN-E200162+) 1 GCACGAGGTT AAACGATTTA TAATTCTTGT AAAAAATCTT CAGTTGAATC CCCTGTTTCC 61 TAGTTACAAT CTTTTTCTTC TTCCTATTTG CAGAAGACTG AATTTTGAAT TGAAGGGTTG 121 CTGTTAATTA GTTGCATCAT GGAAGCTTGT TGTGGAGCTG CGGTTATGAG TTCTCTTCAA 181 CAGCCTGTTT GGGTTAAAGG GTCAACTTTT CCTTCAAAAG GGGTTGCTGG TATTAATGTA 241 AATTCGAGTC TGGTAAAGTT ATGCTCTGTC AAGCCCTGTA GAGCAACTCC AACTGAATGG 301 AGCTTG Predicted gene structure (within gDNA segment 69523 to 67963): Exon 1 68873 68573 ( 301 n); cDNA 6 306 ( 301 n); score: 0.987 MATCH C08SLm0119I05.1- SGN-E200162+ 0.987 301 0.984 C PGS_C08SLm0119I05.1-_SGN-E200162+ (68873 68573) Alignment (genomic DNA sequence = upper lines): AGGTTAAACG ATTTATAATT CTTGTAAAAA ATCTTCAGTT GAATCCCCTG TTTCCTAGTT 68814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTAAACG ATTTATAATT CTTGTAAAAA ATCTTCAGTT GAATCCCCTG TTTCCTAGTT 65 ACAATCTTTT TCTTCTTCCT ATTTGCAGAA AACTGAATTT TGAATTGAAG GGTTGCTGTT 68754 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAATCTTTT TCTTCTTCCT ATTTGCAGAA GACTGAATTT TGAATTGAAG GGTTGCTGTT 125 AATTAGTTGC ATCATGGAAG CTTGTTGTGG AGCTGCGGTT ATGAGTTCTC TTCAGCAGCC 68694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AATTAGTTGC ATCATGGAAG CTTGTTGTGG AGCTGCGGTT ATGAGTTCTC TTCAACAGCC 185 TGTTTGGGTT AAAGGGTCAG CTTTTCCTTC AAAAGGGGTT GCTGGTATTA ATGTAAATTC 68634 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGGTT AAAGGGTCAA CTTTTCCTTC AAAAGGGGTT GCTGGTATTA ATGTAAATTC 245 GAGTCGGGTA AAGTTATGCT CTGTCAAGCC CTGTAGAGCA ACTCCAACTG AATGGAGCTT 68574 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCTGGTA AAGTTATGCT CTGTCAAGCC CTGTAGAGCA ACTCCAACTG AATGGAGCTT 305 G 68573 | G 306 hqPGS_C08SLm0119I05.1-_SGN-E200162+ (68873 68573) ******************************************************************************** EST sequence 93 +strand 780 n (File: SGN-E543331+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTCCGG TTCTAACAAT TTAAACGCGA AAACATTGTT ATTGTAGTTG Predicted gene structure (within gDNA segment 83667 to 72318): Exon 1 82009 81980 ( 30 n); cDNA 369 397 ( 29 n); score: 0.633 Intron 1 81979 80075 (1905 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 80074 80054 ( 21 n); cDNA 398 416 ( 19 n); score: 0.762 Intron 2 80053 75104 (4950 n); Pd: 0.386 (s: 0), Pa: 0.000 (s: 0.75) Exon 3 75103 75000 ( 104 n); cDNA 417 522 ( 106 n); score: 0.803 Intron 3 74999 74122 ( 878 n); Pd: 0.000 (s: 0.85), Pa: 0.000 (s: 0.94) Exon 4 74121 73897 ( 225 n); cDNA 523 748 ( 226 n); score: 0.893 MATCH C08SLm0119I05.1- SGN-E543331+ 0.865 380 0.487 C PGS_C08SLm0119I05.1-_SGN-E543331+ (82009 81980,80074 80054,75103 75000,74121 73897) Alignment (genomic DNA sequence = upper lines): TTTGAATACT TCAGGAATTT TCATGAAAAT GTTGTGGTCC AATGAGCCAT ATAGATAGGC 81950 |||| || | | | ||| || ||| || TTTGGATCCA TGAACCATTG TC-TGATGAT .......... .......... .......... 397 TGTGACAACG TCCATTAGAT GCATTTTATG TTTTTCATGA ACTGCAAGAT TTATGAGATA 81890 .......... .......... .......... .......... .......... .......... 397 TCTGAAGGTG ATTGCATCTA CCACTGGAGA ATATGTCTCC ATATAATCAA TGCCAGGTCT 81830 .......... .......... .......... .......... .......... .......... 397 TTGAGAAAAA CTTTGAGCAA CGAGGCCTTA TATCTCATGA CTTTACCTTT CTCATTTCTT 81770 .......... .......... .......... .......... .......... .......... 397 TTTTGTACAA AAACCCATTT GTACTCCACT GGCTTGATAC CTCCAGGTGT TCGGATTATT 81710 .......... .......... .......... .......... .......... .......... 397 GGTCCAAAAA CTTCACTTTT TTCTAGTGAA GATAATTCAG CTTGAATTGT ATCCTTCCAT 81650 .......... .......... .......... .......... .......... .......... 397 TTTGGCCAAT CATTTCTCTG TCTACATTCG TGAACAGATT TTGGCTCAAA ATCTTCATCT 81590 .......... .......... .......... .......... .......... .......... 397 TGTTGCATTA TTTCAATAGC AACATTATAG GCAAATATGT TTTCAATAAC AATATTATTT 81530 .......... .......... .......... .......... .......... .......... 397 CGGTTCCACA ACTTTCTCGT CGATACATAA TTCATTGAAA TTTCATTATT TTCAAAAGTT 81470 .......... .......... .......... .......... .......... .......... 397 CGAACCTCCT CATCATTATG TGTTATGACT TGGTCTCATC TTGAGAAATT TCTTTCAACC 81410 .......... .......... .......... .......... .......... .......... 397 CATGATCATC TTGATCATTT ATTCCTTTTC TCTTTCGAGG ATTTTTATCC TTGGAACCAA 81350 .......... .......... .......... .......... .......... .......... 397 TTGGTCTACC ACGCTTCAAA TGTGGTCTAG ACTCATTTGC CTTAACAATT TATCCCGTCG 81290 .......... .......... .......... .......... .......... .......... 397 GGATATCAAC TCGAACTGGA GCATTAACAG CTGGAATATG TGATTTAGTA ATCTTGGAAG 81230 .......... .......... .......... .......... .......... .......... 397 ATTAGTAAAT GCATCTGGTA GCTGATTTGC AATGTTCTGC AAATAAATTA TTTTTTAAAC 81170 .......... .......... .......... .......... .......... .......... 397 TTCTTACTCA CATTGGTTTG TTCGAGGATC CAGATGAGAT AGAGTTGATG AATTTCATTC 81110 .......... .......... .......... .......... .......... .......... 397 TATCTCTTTT CCCAACGACT TATGTTCTCC CCCTAATGTT GGGTATACTG ATTCATCAAA 81050 .......... .......... .......... .......... .......... .......... 397 ATGACAATCA GCAAATCTTG CCTTAAATAA ATCTCCAGTC ATAGGCTCCA AATATTTTAT 80990 .......... .......... .......... .......... .......... .......... 397 GATTGAAGGA GATTCATACC CAACATATAT CCCCAACCTT CTTTGGGCCC CCATCTTTGT 80930 .......... .......... .......... .......... .......... .......... 397 GCGTTGTGGT GGAGCAATTG AGACATACAC CACACATTTA AAAATTCTAA GATGGAAAAT 80870 .......... .......... .......... .......... .......... .......... 397 GTTTGGCTCT TGACCAAAAG TCAATTGTAA ATGGAAGAAT TCATGATAAT TGGTCGGCCT 80810 .......... .......... .......... .......... .......... .......... 397 TATGAGCACA AGTGCTGCTG CATACAAAAT AGCATGCCCC CACATAGACA CATATAAGTT 80750 .......... .......... .......... .......... .......... .......... 397 TGTTCTCATT AGTAATGGTC TAGATATCAA TTGCAGACGT TTAATCAATG ATTCTGCTGG 80690 .......... .......... .......... .......... .......... .......... 397 ACCATTTTGA GTGTGAACAT GCGCAAATGG ATGATTAACT GTTATACTTG TAGACATACA 80630 .......... .......... .......... .......... .......... .......... 397 ATAGTCAGGC ATTGTAAACT CACTAGCATT ATCTACACGG ATTGTCTTTA TTGTATAGTT 80570 .......... .......... .......... .......... .......... .......... 397 TGGAAATTGT GTTTTCAATC TTATTATTTG AGTCAGCATT CTCGCAAAAG CCATGTTGCG 80510 .......... .......... .......... .......... .......... .......... 397 AGTTGATAAT AAACACACAT GTGACCATCT TGTAGAAGCA TCTATCAAGA CCATATAATA 80450 .......... .......... .......... .......... .......... .......... 397 TTTAAAGGGT CCACATGCAG GTTGAATTGG TCTACATATA TCACCCTGTA TACGTTCCAG 80390 .......... .......... .......... .......... .......... .......... 397 AAACGCAGGG GATTTAATTC CAACCTTAAC TGTTGATGGT TTAATGATCA ACTTTCCTTT 80330 .......... .......... .......... .......... .......... .......... 397 AGGACAAGCA GCACAAGAGA ATTCCTTTGA TTGAAGGATA TTTGGGCTCT TTAAGGTGTG 80270 .......... .......... .......... .......... .......... .......... 397 CCCATGTGAA TTCTCAATGA TTTTGGGCAT CATATCAAAT TCGGGATGGC CCAACCGGTC 80210 .......... .......... .......... .......... .......... .......... 397 ATGTCAAATG ATTAAATCAT TAAAATTAGT TAACCTTTTA TTTACTACGG CATGTGATTC 80150 .......... .......... .......... .......... .......... .......... 397 AACTATACTT ATACTTGTAT AGTACAACCC ATAAGAAAGT GCAGGTAATT TTTCATGCAC 80090 .......... .......... .......... .......... .......... .......... 397 GGTTTTCTTC TTTACATTAA TTGTAGTAAT GTAAAGGTAT TAGTCCTTTC CTTCATTAGT 80030 || || ||||| |||| || | .......... .....ATGAA TTGTA-TAAT -TACAT.... .......... .......... 416 CGTGTCAACA TGATAGCCAT TTTGGCGAAT AACTTTGAAA CTTAATAAGT TTCTTTGAGA 79970 .......... .......... .......... .......... .......... .......... 416 CTTACTACAA TATAATGCAT TATCAGTGCT TAATATTGTC TCTCCAGGTA GTAAGAATTT 79910 .......... .......... .......... .......... .......... .......... 416 TGTACTACCT GATATTGTGT TGACATATGT CATTTTCATA ACCAAATTAG AAAAGTATTT 79850 .......... .......... .......... .......... .......... .......... 416 CTTTTCTTTT AATATTGTAT GCGTTGTAGC ACTATCAAGA AGGCATACAT CTCCATTACA 79790 .......... .......... .......... .......... .......... .......... 416 TATCTTGATT CCAACTGACA ACTGAGAATT TCTATAGTTT TCATTAAAAT AAAATACATT 79730 .......... .......... .......... .......... .......... .......... 416 AAATAAAGGA AGAAACAAAA TTAACAACGA AAATTTAAAT ACTTCAACAT GAATAACATA 79670 .......... .......... .......... .......... .......... .......... 416 ATAATTAAAA ACACATAAGT AAAGTATTAT GTAAAATATT AACAGACTTC ATTCCCCAGC 79610 .......... .......... .......... .......... .......... .......... 416 TAAAATATCA AACATCAGTT TCGACTTCCA AAGAAGTCAT CAACTTCCAT ATGAGTAATG 79550 .......... .......... .......... .......... .......... .......... 416 TCACTAAGGC CATCAAAAAC ATCATCCTTT AAAGTCAAAT TTGCTTCAAT ATCCTTATCA 79490 .......... .......... .......... .......... .......... .......... 416 TATTTCTGAG ATGTTCCCAG CTTATCATCA TCTTTAAGAG TCATATGTGA CTCGACTCGA 79430 .......... .......... .......... .......... .......... .......... 416 GCATTGGAAG AGGAAGCACC ACTTTTATTT CCTTTCTTTT TAAAGGAATT TTGATAGAGC 79370 .......... .......... .......... .......... .......... .......... 416 CTTAAAAAAT GCTCACGTGT GCGACATTCA TTCTTACAGT GGCCGTTCAT GCCACAACGA 79310 .......... .......... .......... .......... .......... .......... 416 CGACAATTAC TTTTTGAGGG GTTATTTTGA GAACTCGTGT TGTTCTCTCT CTTATTATGA 79250 .......... .......... .......... .......... .......... .......... 416 CCACCACCTT GACGATTAGT GTATCGTCGT TTATCTTTGC CACGTCCGCG TGCATTATTA 79190 .......... .......... .......... .......... .......... .......... 416 TAGCCCCGAT GATCATCTCT TTTTACTTCA GATTGATCAC GTGCTTCCAC CACATTTGCC 79130 .......... .......... .......... .......... .......... .......... 416 TCCGGTAATG GAGCAGCTCT AGTGGGACGA GCTTCATGAT TTTTCATTAA AAGAGCACTA 79070 .......... .......... .......... .......... .......... .......... 416 TGTTGCTCAG CCACCAAAAG ACATGAGATT AGTTCAAAAT AAATCTGAAA ACCCTTTTCA 79010 .......... .......... .......... .......... .......... .......... 416 CGATATTGCT GCTGCAATAT CACATTTGAG GCATGGAAAG TAGTAAATGT CTTTTCCAAC 78950 .......... .......... .......... .......... .......... .......... 416 ATGTCCTCAT CTTTTATAGT CTCCCCACAT AATTTTAACG GGGAGGTTAT CCTGAATACA 78890 .......... .......... .......... .......... .......... .......... 416 ACAGAGTTGT ATTCAATTAC GATCTTAAAA TCTTGAAACT GTAAATGCAT CCACTCATAA 78830 .......... .......... .......... .......... .......... .......... 416 CGAGCTCTTG GCAACACTGT TGTCTTTAGG TGGTCATATC TCCCCTTTAA ATCAGTCCAC 78770 .......... .......... .......... .......... .......... .......... 416 AATTCAAGTA GATTTTTTAC CGTCAGATAT TCAATCTTCA GGCCCTCATC AAGATGATGA 78710 .......... .......... .......... .......... .......... .......... 416 CGAAGGAAAA TCATAGCCTT CGCCTTATCT TGACTTGTTG CTTCATTTCT CTGAGTAATA 78650 .......... .......... .......... .......... .......... .......... 416 GTGGCATCAC GTCCTTTAGC AGCCAAGTGA ATCTCAGCAT CGAGTACCAA TGAAAGATAA 78590 .......... .......... .......... .......... .......... .......... 416 TTCTTTCCAG AAATATCTAA TGCCACAAAC TCAAGTTTGG ATAAATTCGA CATAATAAAA 78530 .......... .......... .......... .......... .......... .......... 416 TTATGAGAGA ATATGTGAAT CAAATAAAAA TATTTATATA ATACCTTTGC AAGTAGCAAC 78470 .......... .......... .......... .......... .......... .......... 416 TTCATGCTGA TAACGTGTTG TAAAGAAAGC TCAGAATATA AGAAGAAAAG ACAAGAAGTA 78410 .......... .......... .......... .......... .......... .......... 416 TAAGATAGAG GAAAGAATTT TCTTATTCAA GTGTATCATA CAATGGTGAA TGATATCTCT 78350 .......... .......... .......... .......... .......... .......... 416 ATTTATAGTG TGGAGATATC ATAGTCAAAG GTTACCTTGG AATTATCCAT AGTTATCATC 78290 .......... .......... .......... .......... .......... .......... 416 AAGGTTCATA TCACCTTGAA ATCTTACCAC ATTCGAAACA CTAATACATG AATCCAATTA 78230 .......... .......... .......... .......... .......... .......... 416 ATTGTTGGAT AACTCTAATG GATCATACAC ATATACTATA CAATGGATTT ACAACATTAA 78170 .......... .......... .......... .......... .......... .......... 416 GATCTATCAT ATTTATTGTA TTTAATTATA ATTTATGGAT TACAAAAAAA ACCTTTATTT 78110 .......... .......... .......... .......... .......... .......... 416 TTTGCATTCT CCACTTAAAT GAAATATCTT CTCAACTTCC TTCTATCTAA TTTCTGTTTT 78050 .......... .......... .......... .......... .......... .......... 416 CCTTCTTCTT TTTTACTAAT ATATTTTTTT CGTTTTTATT TGTTTTTTCT TCATTTTCTT 77990 .......... .......... .......... .......... .......... .......... 416 CATCGATAAT GTATTTAATA ACTAAGAGAG AATATAGAAA AAGTAATGCA GAAATATGAA 77930 .......... .......... .......... .......... .......... .......... 416 TGACCGCTAT GTTCATGAAG ATCATAGATA AGTTTTACAT AATTTCTTTT ATATCATAGT 77870 .......... .......... .......... .......... .......... .......... 416 AGTCAAACAA GAGGACAAGG TGAAATACAT TTTTTTTACT GAAAGTGACA GATTAGTTCT 77810 .......... .......... .......... .......... .......... .......... 416 GTACAACTTT TACAAAATAA GAAGAAAGTT AGTTGCGGTG AAAGTTTCAT CAAGAGAGAT 77750 .......... .......... .......... .......... .......... .......... 416 GATCAGATCA GTTTGATAGA ATTGAATTTG AATGATTTAC GATATATAGA GATACACTTA 77690 .......... .......... .......... .......... .......... .......... 416 TTGTTGCTTA TTTTTAACAA TTTGAATTAA TTCTTTTTCA AATATAAGGT ATATATTCTC 77630 .......... .......... .......... .......... .......... .......... 416 CAAAAAAACA ATATTGTTTG ATAAAGTTTG GAGTGTTGCG TACATATATA ATTTTTTTTA 77570 .......... .......... .......... .......... .......... .......... 416 TACAGGATAA TTGTTAACTT CTTCTAAAAA GTGTGTTGAT TTTTTAGGGA AAAAATTGTT 77510 .......... .......... .......... .......... .......... .......... 416 GATTCTTAAA AATCTCTCTA TCTACATAAT AACTGTTCAT CTAGAATAGT GTTGTATTTT 77450 .......... .......... .......... .......... .......... .......... 416 CTCTCTTTAC TTTGGTAATT TTTTTCTTTT TCTTCCTATT TATTATTGAA CTTATTTTTT 77390 .......... .......... .......... .......... .......... .......... 416 CAACTTTTTC TGCCCAGCTA ATTCTTTTTT TTTGTTCTTT TTTTGTGTAT TTTAAAATTT 77330 .......... .......... .......... .......... .......... .......... 416 ATTTTCTTTC TTACCTTATT TTTCCTTTTA ATTTTAATTA ATTTTTTTAG TGATTTGATA 77270 .......... .......... .......... .......... .......... .......... 416 TGATAATTCT TTAGGTTGGT AAACAGACGA ATACTAGAAA GCAAGTAGTG ATGAAGTTAT 77210 .......... .......... .......... .......... .......... .......... 416 AACAAAGAGG AGGAAAAAGT CCAAATTAAA AAAAATATTG ATGTAAAAAA CTAATACTTT 77150 .......... .......... .......... .......... .......... .......... 416 CAATATTAAA GAGTATGTAT CTTATAGATA ACTTGTAATA ACAATTGTTA CAAAATATGG 77090 .......... .......... .......... .......... .......... .......... 416 ATATATTTAA TTGATTTTTT ATATCTTATC TTTTATGATT TAGTGTCAAA TTTTATTTGA 77030 .......... .......... .......... .......... .......... .......... 416 ATTCTATTCA TAACCGCACG AATCGCAACC AAGTATACTA GTATTACATA AGTTAGAACT 76970 .......... .......... .......... .......... .......... .......... 416 TGGGTGAACA TAAGACATAG CAATAGGGTG AACAAAAGAC AACATTTTCT TGTCTTCCTC 76910 .......... .......... .......... .......... .......... .......... 416 GATGGCTTCT CGAACAAACA AAGGGGCATT ATGCCATACT TAAAAAAGAA TATTTATTGG 76850 .......... .......... .......... .......... .......... .......... 416 TAGGGTTCTT CTGAAACGAG CTAGCAGATC AACCACTCCA TTTTGTTCCC TAGGTTCATG 76790 .......... .......... .......... .......... .......... .......... 416 CTCCTTGGTT CAATAGCATT TCCATTATTT TGAAGATGTA TTACCTCGGT TGAGTCAGGG 76730 .......... .......... .......... .......... .......... .......... 416 GCAATGGTGA GTGGTGAAGG CTTAGGCTAT GTGTCAGCCT TAGGCCATGA ACTAATGTTG 76670 .......... .......... .......... .......... .......... .......... 416 CTAGATCTGT CCTTGTTATT GAGGTGGATG TAATTCTTGT GCTTTAACCT ACTATCCAGT 76610 .......... .......... .......... .......... .......... .......... 416 TGCCTTTTGA TTCTCAGACT ATACACCCTG TCCCTCTTTT AAAGGTGATA TAATCAAAGG 76550 .......... .......... .......... .......... .......... .......... 416 GACCATCATC ATTCAATTTT AGGCCAGCTG GTAGGGGTGT CAAGGGCAGA GATTGGTAAG 76490 .......... .......... .......... .......... .......... .......... 416 AGATGTTATT TTTGACTTCG GATTTCTGCT AGGACCAAGA AAGGCATACT ATGTTGCTCT 76430 .......... .......... .......... .......... .......... .......... 416 ATCAATTATG GACGTGACAT TGACCTTTAC CTTGATTTCT TATAGATATT GTTGTTACGA 76370 .......... .......... .......... .......... .......... .......... 416 TTAATTCAAA TGGAAACATC TCGAATTAGT CAAAAAAGCT AAAAACTTCT TTATATCTCT 76310 .......... .......... .......... .......... .......... .......... 416 AATACTGTTG AGCCAATTTG GATTATTATT TATTTTTATT TTCTCGATCA AGTCATGAAG 76250 .......... .......... .......... .......... .......... .......... 416 GCACAGAGTA ATCCAGACCT TCCTAACTAG GGGACATCGA GAAGTATATG TTTGTTAGTT 76190 .......... .......... .......... .......... .......... .......... 416 TCAGGTTGGC AACAGATTTT GCACAAGGGG TCTATATCTG TACCAATGCT ATGAAAATTT 76130 .......... .......... .......... .......... .......... .......... 416 AAAAGGTTGG ATCTTTTGGT GGTATCCTTT TATTTAAGGG CTATTTAAGG GCTATGTAGA 76070 .......... .......... .......... .......... .......... .......... 416 CCAATTTGGT AGTGAAATTT CCTTTACTAA TTAGTGTCCA ATTTATTTTG TCGCACATGT 76010 .......... .......... .......... .......... .......... .......... 416 TTGGGGCTTG GGGTATATGG ATGGAGGTAA TTTCAGAACT AAGATTCATT GATAATTTGA 75950 .......... .......... .......... .......... .......... .......... 416 ATTTAGATCT TCAAGTGTTT ATGTCCCATT ATGTATTACG TCCCTATCTT TGAGTAAGAG 75890 .......... .......... .......... .......... .......... .......... 416 TTCAACTTTA CAGAGGGGGC CTATGACTCT GCACCTTAAG GGGGTTGTAT TTGAGAGCCA 75830 .......... .......... .......... .......... .......... .......... 416 TTTATCCTTC CAGAAGTTGG TTTCGTTAGC ATTTCCTAGA TCCTATTTGG TGTACTGTAT 75770 .......... .......... .......... .......... .......... .......... 416 GTTGTTTTTC CAGCCCTAGA TGATGTTCTG CTAGGTCCTA CTAACAGTTT TGAGGTGGTG 75710 .......... .......... .......... .......... .......... .......... 416 CTAGTAGGTG AATAAGTCAG TATTTCTAGC ATATTCGTTT AGAAAGAGTA AGGCCCAAAG 75650 .......... .......... .......... .......... .......... .......... 416 AGAACGAGGA ATCATAAAAA AGTGCTAGGC TAGTTAGGTG ATAAGTGCTA GGCTAGTTAG 75590 .......... .......... .......... .......... .......... .......... 416 ACACCCAATC CACTTGAATC CCTATCCTTA GTAATTACGT CCCACTTTAT CATGTGCAGT 75530 .......... .......... .......... .......... .......... .......... 416 TTTCTCATAA ATTCAGTGGT TCCCTAAACA AAGTCCTTTT GAATTTTATC AATGGTTTTT 75470 .......... .......... .......... .......... .......... .......... 416 AATTTACTAC AGGGAGGTTA ATATATTACA TATCATGAGT TGCCATATGG TTGAGGAAGG 75410 .......... .......... .......... .......... .......... .......... 416 ATTTTGCTAA GGTAGTTCTT TCTGCCATGT CGAGAAAGTT GTTTTTCCAA TACTAAGCTT 75350 .......... .......... .......... .......... .......... .......... 416 CAATTGAAGA TAATCTATTA TGAATTGGAG GTCCTTTCTA AGTGGTATCC CATCAAATAT 75290 .......... .......... .......... .......... .......... .......... 416 TGGAACGTCC AAATATGTCC CAAAGAAATT GTTGCAGTGG ATATCCAGAT CTATTGATAT 75230 .......... .......... .......... .......... .......... .......... 416 ACTCTCTGTT ACTTCGCTAA AACATTTCTT AGAAAAGATT TTTTCAACTT TTTGTCCTGA 75170 .......... .......... .......... .......... .......... .......... 416 CCAGTAGCAA AAAGAGCCTA TGACTTCAGT AATGATTCTA CAACTCTTAG AGGTTTTGGA 75110 .......... .......... .......... .......... .......... .......... 416 CATGAGCAAT AATTGTTGGG TTTTA-TTTG CCCT-GATTT CTTAGCATAA ATAGGTTTTC 75052 || | | |||||| ||||| |||| ||| |||| |||| ||||| ||||||||| ......CATT TA-TGTTGGA TTTTATTTTG TCCTAAATTT CTTATCATAA ATAGGTTTTT 469 CTTTTAGGAA -AAGGTTTTG GATTGGCTAA TCCTTTTTCT GGTAGGAAAA GGTTTAGGAC 74993 |||||||||| || |||||| |||| |||| | |||||||| |||||||||| || CTTTTAGGAA AAAAGTTTTG AATTGACTAA TTCTTTTTCT GGTAGGAAAA TGT....... 522 TCTATAAATA GAGGCATGTT CCTTCTAACT TAATTAGCAT TCACAATGTA GTCTTAAGGG 74933 .......... .......... .......... .......... .......... .......... 522 CTTTGAGAGT TTTGGTTAGG GGGAGAATTT ATGAGTCACA AGTTTGATAC GTTATCACTT 74873 .......... .......... .......... .......... .......... .......... 522 GTGTGAACCT CCCATGTATT CCGAGTGAAT TGGTTGAGGT TGTTTCTCTC TGTATTTTGT 74813 .......... .......... .......... .......... .......... .......... 522 ACTCTCATAT TTATAGTGGA TTTCTCATCT CCTTTGTGAA CGTATGTCGA TTGACCGAAC 74753 .......... .......... .......... .......... .......... .......... 522 CACGTTAAAT CTGTGTGTCT TTTGGTATAT TTCTCATTGT CTTCTTACTC GTGGTCTTTC 74693 .......... .......... .......... .......... .......... .......... 522 GAGGTCTGCT TTGCTAGCTT CCGCATTTAC ATCTCTTATT TTTGGTCCTA AAAAGTGGTA 74633 .......... .......... .......... .......... .......... .......... 522 TCAGAGCCAG ATTCAATGAC GGAGTTAGGT TCAGTGGTTC GATAATCAAT GATTGAATCA 74573 .......... .......... .......... .......... .......... .......... 522 AGTTAGAAAG AGGTGTTCAT CTTGACGGGT GTAGTTCTAG CCGCAACCTT TTTGACAGTA 74513 .......... .......... .......... .......... .......... .......... 522 ATGAAGATTT TGTCGGAGAA ATTGTTTCAC AGAGGTTCTC TGTGTTGAGA CACAAATTTT 74453 .......... .......... .......... .......... .......... .......... 522 GCAAAGGAGA TTATGGAGAG GAGAAGCAAG TTGTTGAATA TTAAGTAAAG AAGGTGGACA 74393 .......... .......... .......... .......... .......... .......... 522 AATTTAATTT GTCAGAAATT CAGGCCAAGG GGGAGATTTG TTGGGTTTTA TTTGCCCTGA 74333 .......... .......... .......... .......... .......... .......... 522 TTTCTTACCA TAAATAGGTT TTCCTTTTAG GAAAAGGTTT TGGATTGACT AATCTTTTTT 74273 .......... .......... .......... .......... .......... .......... 522 CTGGTAGGAA AAGGTTTAAG ACTCTATAAA TAGAGGCATG TTCTTTCTAA CTTAATTAGC 74213 .......... .......... .......... .......... .......... .......... 522 ATTCACAATG TAGTCTTAAG GGCTTTGAGA GTTTTGGTTA GGGGGAAAAT TTATGAGTCA 74153 .......... .......... .......... .......... .......... .......... 522 CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCCGAGTGA ATTGGTTGAG 74093 |||| |||| ||| ||||| |||||||||| .......... .......... .......... .TCCCGTGTA TTCTTAGTGA ATTGGTTGAG 551 GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT CTCCTTTGTG 74033 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT CTCCATTGTG 611 GATGTAGGTC GATTGACCGA ACCACGTTAA ATTTGTGTGT CTTTTGGTAT ATTTCTCGTT 73973 || ||||||| |||||||||| |||||||||| || | ||||| |||||||||| |||||||||| GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTGTGT CTTTTGGTAT ATTTCTCGTT 671 GTC-TTCTTA CTCGTGGTCT TTCGAGATCT GCTTTGCAAG C-TTCCGCAT TTACATCTGC 73915 ||| ||| || |||||||||| || ||| | | ||||||| || | |||||| | |||| |||| GTCTTTCATA CTCGTGGTCT TTTGAGGTTT GCTTTGCTAG CTTTCCGCGT TTAC-CCTGC 730 TTATTTTCGA TCCTAACA 73897 |||||| || | |||||| TTATTTCCGG TTCTAACA 748 hqPGS_C08SLm0119I05.1-_SGN-E543331+ (80074 80054,75103 75000,74121 73897) ******************************************************************************** EST sequence 32 -strand 535 n (File: SGN-E243194-) 1 TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GGAGATTATG GAGAGGAGAA 61 GCAAGTTGTT GAAGATTAAG TGAAGAAGGT GGACAAGTTT ATTTGTCAGA AATTCAGGCC 121 AAGGGGGAGA CTTGTTGGGT TTTATTTGCC CTAAATTTCT TACCATAAAT AGGTTTTCCT 181 TGTAGGAAAA GGTTTTGGAT TGACTAATCC TTTTCTTGTA GGAAAAGGTT TTGGATTGAC 241 TAATCCTTTT CTTGTAGGAA AAGGTTTAGG ACTCCATAAA TAGAGGCATT TTTCTTCTAA 301 CTTAATCAGC ATTCAAAATG TAGTCTTAAG TGCTTTGAGA GTTTTGGTTA GAGGGAGAAT 361 TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCTGAGTGA 421 ATTGGTTGAG GTTGTTTCCC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 481 CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTATGT CTTTT Predicted gene structure (within gDNA segment 79249 to 73581): Exon 1 77869 77851 ( 19 n); cDNA 79 97 ( 19 n); score: 0.737 Intron 1 77850 75830 (2021 n); Pd: 0.752 (s: 0), Pa: 0.000 (s: 0) Exon 2 75829 75815 ( 15 n); cDNA 98 111 ( 14 n); score: 0.733 Intron 2 75814 75118 ( 697 n); Pd: 0.615 (s: 0), Pa: 0.000 (s: 0.72) Exon 3 75117 75002 ( 116 n); cDNA 112 227 ( 116 n); score: 0.841 Intron 3 75001 74297 ( 705 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 4 74296 73988 ( 309 n); cDNA 228 535 ( 308 n); score: 0.932 MATCH C08SLm0119I05.1- SGN-E243194- 0.907 459 0.858 C PGS_C08SLm0119I05.1-_SGN-E243194- (77869 77851,75829 75815,75117 75002,74296 73988) Alignment (genomic DNA sequence = upper lines): AGTCAAACAA GAGGACAAGG TGAAATACAT TTTTTTTACT GAAAGTGACA GATTAGTTCT 77810 ||| || | | ||||||| AGTGAAGAAG GTGGACAAG. .......... .......... .......... .......... 97 GTACAACTTT TACAAAATAA GAAGAAAGTT AGTTGCGGTG AAAGTTTCAT CAAGAGAGAT 77750 .......... .......... .......... .......... .......... .......... 97 GATCAGATCA GTTTGATAGA ATTGAATTTG AATGATTTAC GATATATAGA GATACACTTA 77690 .......... .......... .......... .......... .......... .......... 97 TTGTTGCTTA TTTTTAACAA TTTGAATTAA TTCTTTTTCA AATATAAGGT ATATATTCTC 77630 .......... .......... .......... .......... .......... .......... 97 CAAAAAAACA ATATTGTTTG ATAAAGTTTG GAGTGTTGCG TACATATATA ATTTTTTTTA 77570 .......... .......... .......... .......... .......... .......... 97 TACAGGATAA TTGTTAACTT CTTCTAAAAA GTGTGTTGAT TTTTTAGGGA AAAAATTGTT 77510 .......... .......... .......... .......... .......... .......... 97 GATTCTTAAA AATCTCTCTA TCTACATAAT AACTGTTCAT CTAGAATAGT GTTGTATTTT 77450 .......... .......... .......... .......... .......... .......... 97 CTCTCTTTAC TTTGGTAATT TTTTTCTTTT TCTTCCTATT TATTATTGAA CTTATTTTTT 77390 .......... .......... .......... .......... .......... .......... 97 CAACTTTTTC TGCCCAGCTA ATTCTTTTTT TTTGTTCTTT TTTTGTGTAT TTTAAAATTT 77330 .......... .......... .......... .......... .......... .......... 97 ATTTTCTTTC TTACCTTATT TTTCCTTTTA ATTTTAATTA ATTTTTTTAG TGATTTGATA 77270 .......... .......... .......... .......... .......... .......... 97 TGATAATTCT TTAGGTTGGT AAACAGACGA ATACTAGAAA GCAAGTAGTG ATGAAGTTAT 77210 .......... .......... .......... .......... .......... .......... 97 AACAAAGAGG AGGAAAAAGT CCAAATTAAA AAAAATATTG ATGTAAAAAA CTAATACTTT 77150 .......... .......... .......... .......... .......... .......... 97 CAATATTAAA GAGTATGTAT CTTATAGATA ACTTGTAATA ACAATTGTTA CAAAATATGG 77090 .......... .......... .......... .......... .......... .......... 97 ATATATTTAA TTGATTTTTT ATATCTTATC TTTTATGATT TAGTGTCAAA TTTTATTTGA 77030 .......... .......... .......... .......... .......... .......... 97 ATTCTATTCA TAACCGCACG AATCGCAACC AAGTATACTA GTATTACATA AGTTAGAACT 76970 .......... .......... .......... .......... .......... .......... 97 TGGGTGAACA TAAGACATAG CAATAGGGTG AACAAAAGAC AACATTTTCT TGTCTTCCTC 76910 .......... .......... .......... .......... .......... .......... 97 GATGGCTTCT CGAACAAACA AAGGGGCATT ATGCCATACT TAAAAAAGAA TATTTATTGG 76850 .......... .......... .......... .......... .......... .......... 97 TAGGGTTCTT CTGAAACGAG CTAGCAGATC AACCACTCCA TTTTGTTCCC TAGGTTCATG 76790 .......... .......... .......... .......... .......... .......... 97 CTCCTTGGTT CAATAGCATT TCCATTATTT TGAAGATGTA TTACCTCGGT TGAGTCAGGG 76730 .......... .......... .......... .......... .......... .......... 97 GCAATGGTGA GTGGTGAAGG CTTAGGCTAT GTGTCAGCCT TAGGCCATGA ACTAATGTTG 76670 .......... .......... .......... .......... .......... .......... 97 CTAGATCTGT CCTTGTTATT GAGGTGGATG TAATTCTTGT GCTTTAACCT ACTATCCAGT 76610 .......... .......... .......... .......... .......... .......... 97 TGCCTTTTGA TTCTCAGACT ATACACCCTG TCCCTCTTTT AAAGGTGATA TAATCAAAGG 76550 .......... .......... .......... .......... .......... .......... 97 GACCATCATC ATTCAATTTT AGGCCAGCTG GTAGGGGTGT CAAGGGCAGA GATTGGTAAG 76490 .......... .......... .......... .......... .......... .......... 97 AGATGTTATT TTTGACTTCG GATTTCTGCT AGGACCAAGA AAGGCATACT ATGTTGCTCT 76430 .......... .......... .......... .......... .......... .......... 97 ATCAATTATG GACGTGACAT TGACCTTTAC CTTGATTTCT TATAGATATT GTTGTTACGA 76370 .......... .......... .......... .......... .......... .......... 97 TTAATTCAAA TGGAAACATC TCGAATTAGT CAAAAAAGCT AAAAACTTCT TTATATCTCT 76310 .......... .......... .......... .......... .......... .......... 97 AATACTGTTG AGCCAATTTG GATTATTATT TATTTTTATT TTCTCGATCA AGTCATGAAG 76250 .......... .......... .......... .......... .......... .......... 97 GCACAGAGTA ATCCAGACCT TCCTAACTAG GGGACATCGA GAAGTATATG TTTGTTAGTT 76190 .......... .......... .......... .......... .......... .......... 97 TCAGGTTGGC AACAGATTTT GCACAAGGGG TCTATATCTG TACCAATGCT ATGAAAATTT 76130 .......... .......... .......... .......... .......... .......... 97 AAAAGGTTGG ATCTTTTGGT GGTATCCTTT TATTTAAGGG CTATTTAAGG GCTATGTAGA 76070 .......... .......... .......... .......... .......... .......... 97 CCAATTTGGT AGTGAAATTT CCTTTACTAA TTAGTGTCCA ATTTATTTTG TCGCACATGT 76010 .......... .......... .......... .......... .......... .......... 97 TTGGGGCTTG GGGTATATGG ATGGAGGTAA TTTCAGAACT AAGATTCATT GATAATTTGA 75950 .......... .......... .......... .......... .......... .......... 97 ATTTAGATCT TCAAGTGTTT ATGTCCCATT ATGTATTACG TCCCTATCTT TGAGTAAGAG 75890 .......... .......... .......... .......... .......... .......... 97 TTCAACTTTA CAGAGGGGGC CTATGACTCT GCACCTTAAG GGGGTTGTAT TTGAGAGCCA 75830 .......... .......... .......... .......... .......... .......... 97 TTTATCCTTC CAGAAGTTGG TTTCGTTAGC ATTTCCTAGA TCCTATTTGG TGTACTGTAT 75770 ||||| | ||||| TTTAT-TTGT CAGAA..... .......... .......... .......... .......... 111 GTTGTTTTTC CAGCCCTAGA TGATGTTCTG CTAGGTCCTA CTAACAGTTT TGAGGTGGTG 75710 .......... .......... .......... .......... .......... .......... 111 CTAGTAGGTG AATAAGTCAG TATTTCTAGC ATATTCGTTT AGAAAGAGTA AGGCCCAAAG 75650 .......... .......... .......... .......... .......... .......... 111 AGAACGAGGA ATCATAAAAA AGTGCTAGGC TAGTTAGGTG ATAAGTGCTA GGCTAGTTAG 75590 .......... .......... .......... .......... .......... .......... 111 ACACCCAATC CACTTGAATC CCTATCCTTA GTAATTACGT CCCACTTTAT CATGTGCAGT 75530 .......... .......... .......... .......... .......... .......... 111 TTTCTCATAA ATTCAGTGGT TCCCTAAACA AAGTCCTTTT GAATTTTATC AATGGTTTTT 75470 .......... .......... .......... .......... .......... .......... 111 AATTTACTAC AGGGAGGTTA ATATATTACA TATCATGAGT TGCCATATGG TTGAGGAAGG 75410 .......... .......... .......... .......... .......... .......... 111 ATTTTGCTAA GGTAGTTCTT TCTGCCATGT CGAGAAAGTT GTTTTTCCAA TACTAAGCTT 75350 .......... .......... .......... .......... .......... .......... 111 CAATTGAAGA TAATCTATTA TGAATTGGAG GTCCTTTCTA AGTGGTATCC CATCAAATAT 75290 .......... .......... .......... .......... .......... .......... 111 TGGAACGTCC AAATATGTCC CAAAGAAATT GTTGCAGTGG ATATCCAGAT CTATTGATAT 75230 .......... .......... .......... .......... .......... .......... 111 ACTCTCTGTT ACTTCGCTAA AACATTTCTT AGAAAAGATT TTTTCAACTT TTTGTCCTGA 75170 .......... .......... .......... .......... .......... .......... 111 CCAGTAGCAA AAAGAGCCTA TGACTTCAGT AATGATTCTA CAACTCTTAG AGGTTTTGGA 75110 || || .......... .......... .......... .......... .......... ..ATTCAGGC 119 CATGAGCAAT AATTGTTGGG TTTTATTTGC CCTG-ATTTC TTAGCATAAA TAGGTTTTCC 75051 || | | | | |||||||| |||||||||| ||| ||||| ||| |||||| |||||||||| CAAGGGGGAG ACTTGTTGGG TTTTATTTGC CCTAAATTTC TTACCATAAA TAGGTTTTCC 179 TTTTAGGAAA AGGTTTTGGA TTGGCTAATC CTTTTTCTGG TAGGAAAAGG TTTAGGACTC 74991 || ||||||| |||||||||| ||| |||||| | |||||| | ||||||||| TTGTAGGAAA AGGTTTTGGA TTGACTAATC C-TTTTCTTG TAGGAAAAG. .......... 227 TATAAATAGA GGCATGTTCC TTCTAACTTA ATTAGCATTC ACAATGTAGT CTTAAGGGCT 74931 .......... .......... .......... .......... .......... .......... 227 TTGAGAGTTT TGGTTAGGGG GAGAATTTAT GAGTCACAAG TTTGATACGT TATCACTTGT 74871 .......... .......... .......... .......... .......... .......... 227 GTGAACCTCC CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC 74811 .......... .......... .......... .......... .......... .......... 227 TCTCATATTT ATAGTGGATT TCTCATCTCC TTTGTGAACG TATGTCGATT GACCGAACCA 74751 .......... .......... .......... .......... .......... .......... 227 CGTTAAATCT GTGTGTCTTT TGGTATATTT CTCATTGTCT TCTTACTCGT GGTCTTTCGA 74691 .......... .......... .......... .......... .......... .......... 227 GGTCTGCTTT GCTAGCTTCC GCATTTACAT CTCTTATTTT TGGTCCTAAA AAGTGGTATC 74631 .......... .......... .......... .......... .......... .......... 227 AGAGCCAGAT TCAATGACGG AGTTAGGTTC AGTGGTTCGA TAATCAATGA TTGAATCAAG 74571 .......... .......... .......... .......... .......... .......... 227 TTAGAAAGAG GTGTTCATCT TGACGGGTGT AGTTCTAGCC GCAACCTTTT TGACAGTAAT 74511 .......... .......... .......... .......... .......... .......... 227 GAAGATTTTG TCGGAGAAAT TGTTTCACAG AGGTTCTCTG TGTTGAGACA CAAATTTTGC 74451 .......... .......... .......... .......... .......... .......... 227 AAAGGAGATT ATGGAGAGGA GAAGCAAGTT GTTGAATATT AAGTAAAGAA GGTGGACAAA 74391 .......... .......... .......... .......... .......... .......... 227 TTTAATTTGT CAGAAATTCA GGCCAAGGGG GAGATTTGTT GGGTTTTATT TGCCCTGATT 74331 .......... .......... .......... .......... .......... .......... 227 TCTTACCATA AATAGGTTTT CCTTTTAGGA AAAGGTTTTG GATTGACTAA TCTTTTTTCT 74271 |||||| |||||||||| || |||||| .......... .......... .......... ....GTTTTG GATTGACTAA TC-CTTTTCT 252 GGTAGGAAAA GGTTTAAGAC TCTATAAATA GAGGCATGTT CTTTCTAACT TAATTAGCAT 74211 ||||||||| |||||| ||| || ||||||| ||||||| || |||||||| |||| ||||| TGTAGGAAAA GGTTTAGGAC TCCATAAATA GAGGCATTTT TCTTCTAACT TAATCAGCAT 312 TCACAATGTA GTCTTAAGGG CTTTGAGAGT TTTGGTTAGG GGGAAAATTT ATGAGTCACA 74151 ||| |||||| |||||||| | |||||||||| ||||||||| |||| ||||| || |||||| TCAAAATGTA GTCTTAAGTG CTTTGAGAGT TTTGGTTAGA GGGAGAATTT GTGGGTCACA 372 AGCTTGATAC GTTATCACTT GTGTGAACCT CCCATGTATT CCGAGTGAAT TGGTTGAGGT 74091 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGCTTGATAC GTTATCACTT GTGTGAACCT CCCATGTATT CTGAGTGAAT TGGTTGAGGT 432 TGTTTCTCTC TGTATTTTGT ACTCTCATAT TTATAGTGGA TTGCTCATCT CCTTTGTGGA 74031 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCCCTC TGTATTTTGT ACTCTCATAT TTATAGTGGA TTGCTCATCT CCTTTGTGGA 492 TGTAGGTCGA TTGACCGAAC CACGTTAAAT TTGTGTGTCT TTT 73988 ||||||||| |||||||||| |||||||||| | | ||||| ||| CGTAGGTCGA TTGACCGAAC CACGTTAAAT CTTTATGTCT TTT 535 hqPGS_C08SLm0119I05.1-_SGN-E243194- (75117 75002,74296 73988) ******************************************************************************** EST sequence 39 -strand 349 n (File: SGN-E207598-) 1 TTGTGGGTCA CAAGCTTGAT ACGTTATTAC TTGTGTGACC CTCCCATGTA TTCTGAGTGA 61 ATTGGTTGAG ATTGTTTCCC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT 121 CTCCTTTGTG GACATAGGTC GATTGACCGA CCCACGTTAA ATCTTTGTGT CTTTTGGTAT 181 ATTTCTCGTT GTCTTCTAAC TCGTGGTCTT TCGATGTTAG CATTGCTAGC TTCCGCGTTT 241 ACACCTGCTT ATTTTTCGGT CCATGCATTA TACGTACGCC ACCTATAGTT GTAAATTAAG 301 CCATTGCTTC TGCAGACAAA ATATACATAG CTCTACTTAG TTTCTTTTC Predicted gene structure (within gDNA segment 76000 to 72741): Exon 1 74162 73894 ( 269 n); cDNA 1 270 ( 270 n); score: 0.890 MATCH C08SLm0119I05.1- SGN-E207598- 0.890 269 0.771 C PGS_C08SLm0119I05.1-_SGN-E207598- (74162 73894) Alignment (genomic DNA sequence = upper lines): TTATGAGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCCGAGTGA 74103 || || |||| |||||||||| ||||||| || |||||||| | |||||||||| ||| |||||| TTGTGGGTCA CAAGCTTGAT ACGTTATTAC TTGTGTGACC CTCCCATGTA TTCTGAGTGA 60 ATTGGTTGAG GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 74043 |||||||||| ||||||| | |||||||||| |||||||||| ||| |||||| |||||||||| ATTGGTTGAG ATTGTTTCCC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT 120 CTCCTTTGTG GATGTAGGTC GATTGACCGA ACCACGTTAA ATTTGTGTGT CTTTTGGTAT 73983 |||||||||| || |||||| |||||||||| ||||||||| || | ||||| |||||||||| CTCCTTTGTG GACATAGGTC GATTGACCGA CCCACGTTAA ATCTTTGTGT CTTTTGGTAT 180 ATTTCTCGTT GTCTTCTTAC TCGTGGTCTT TCGAGATCTG CTTTGCAAGC TTCCGCATTT 73923 |||||||||| ||||||| || |||||||||| |||| | | | |||| ||| |||||| ||| ATTTCTCGTT GTCTTCTAAC TCGTGGTCTT TCGATGTTAG CATTGCTAGC TTCCGCGTTT 240 ACATCTGCTT A-TTTTCGAT CCTAACAATA 73894 ||| |||||| | |||||| | || || || ACACCTGCTT ATTTTTCGGT CCATGCATTA 270 hqPGS_C08SLm0119I05.1-_SGN-E207598- (74162 73894) ******************************************************************************** EST sequence 66 +strand 747 n (File: SGN-E211090+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC TGCTTATTTT CGGTCCTAAC ATATCTGAGT TTGCAGTTCT GTCCCTCCAC 541 CCCCTTCTTT TTGCAGGCAC AAATGGAATC AGTAAACTTA GCAGCAAATT CTTATTATGT 601 ACCAGAATCT GATTTTACGA GTTATTTGAA CTTTGGTGCT GCTGTCAGTG AGGTGGAGAT 661 TGATATCCTG ACCGGAGAGA CTACCATTTT GCAATCTGAT ATTATTTACG ACTGTGGGCA 721 GAGCTTGAAT CCAGCCGTTG ATATGGG Predicted gene structure (within gDNA segment 75557 to 67391): Exon 1 74355 73897 ( 459 n); cDNA 54 511 ( 458 n); score: 0.924 MATCH C08SLm0119I05.1- SGN-E211090+ 0.924 459 0.614 C PGS_C08SLm0119I05.1-_SGN-E211090+ (74355 73897) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TGATTTCTTA CCATAAATAG GTTTTCCTTT TAGGAAAAGG 74296 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGGATT TTATTTGCCC TGATTTCTTA CCATAAATAG GTTTTCCTTT TAGGAAAAGG 113 TTTTGGATTG ACTAATCTTT TTTCTGGTAG GAAAAGGTTT AAGACTCTAT AAATAGAGGC 74236 ||||| |||| ||||||| | ||||| |||| |||||||||| | |||||||| ||||||| | TTTTGAATTG ACTAATC-CT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCTTTC TAACTTAATT AGCATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGG 74176 || ||| || ||||||||| |||||||||| |||||||||| | ||||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTAGTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGGGGGAA AATTTATGAG TCACAAGCTT GATACGTTAT CACTTGTGTG AACCTCCCAT 74116 |||| |||| ||| | || | |||||||||| |||| ||||| |||||||||| |||||||||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 292 GTATTCCGAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 74056 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTGCT CATCTCCTTT GTGGATGTAG GTCGATTGAC CGAACCACGT TAAATTTGTG 73996 |||||||||| |||||||||| ||||| |||| || ||||||| |||||||||| ||||| | || GTGGATTGCT CATCTCCTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGG TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGAT CTGCTTTGCA 73936 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | || |||| TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 472 AGCTTCCGCA TTTACATCTG CTTATTTTCG ATCCTAACA 73897 ||||||||| |||||| ||| |||||||||| |||||||| AGCTTCCGCG TTTACACCTG CTTATTTTCG GTCCTAACA 511 hqPGS_C08SLm0119I05.1-_SGN-E211090+ (74355 73897) ******************************************************************************** EST sequence 13 -strand 667 n (File: SGN-E389613-) 1 CTCATATTAC TAATAGGTAA TCATTGCAAC TAATTTGGAT GAGTACAAGA ATGTTTCTAA 61 CAAATTATTA TCATGTTCTA TTTTGCTTTT ATTCTGCCTG TTCTATTATA ACTTTTAACT 121 GATCATGAAT GTACATTCCT CCTGTGATTT GCACATACAT AATGCGTTGA GGTATGAGTC 181 ACAAGCTTCT TGATACGTTA TCACTTGTGT GAATCTCTCA TGTATTCTGA GTGAATTTGG 241 TTGAGGTTGT TTCTCTCTGT ATTTTGTATT CTCATATTTA TAATGGATTG CTCATCTCCT 301 TTGTGGACGT AGGTCAATTG ACCGAACCAC GTTAAATCTC TGTATCTTTT GGTATATTTC 361 TCGTTGTCTT CTTACTCGTG GTCTTTTGAG GTTTGCTTTG CTAGCTTCCG CGTTTACACC 421 TGCTTATTTT TGGTCCTAAC ACCGTCAAGG TTCCATTGAC TCATTACTAT CAGGTTATGG 481 ATTTGTGATG GTGGAAGGTA GCAGGTACGC GTTGCATGCA AGCTATCTCA TTTCATATTG 541 TGGGGCAAAA TTAATTAGGT ATATAAGTTA GTGCTGCCAA AGGCAAAAAA GGATCTGTAA 601 CTAAATACTT TTACCAATGG TCCAATGCTA AGGATCTATG GCTGGATTTG GAGATTGCAG 661 TAATGTA Predicted gene structure (within gDNA segment 78413 to 71762): Exon 1 77279 77256 ( 24 n); cDNA 145 169 ( 25 n); score: 0.583 Intron 1 77255 74907 (2349 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 74906 74888 ( 19 n); cDNA 170 188 ( 19 n); score: 0.842 Intron 2 74887 74149 ( 739 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.89) Exon 3 74148 73897 ( 252 n); cDNA 189 441 ( 253 n); score: 0.919 MATCH C08SLm0119I05.1- SGN-E389613- 0.919 295 0.442 C PGS_C08SLm0119I05.1-_SGN-E389613- (77279 77256,74906 74888,74148 73897) Alignment (genomic DNA sequence = upper lines): TGATTTG-AT ATG-ATAATT CTTTAGGTTG GTAAACAGAC GAATACTAGA AAGCAAGTAG 77222 ||||||| | || ||||| | || | TGATTTGCAC ATACATAATG CGTT-G.... .......... .......... .......... 169 TGATGAAGTT ATAACAAAGA GGAGGAAAAA GTCCAAATTA AAAAAAATAT TGATGTAAAA 77162 .......... .......... .......... .......... .......... .......... 169 AACTAATACT TTCAATATTA AAGAGTATGT ATCTTATAGA TAACTTGTAA TAACAATTGT 77102 .......... .......... .......... .......... .......... .......... 169 TACAAAATAT GGATATATTT AATTGATTTT TTATATCTTA TCTTTTATGA TTTAGTGTCA 77042 .......... .......... .......... .......... .......... .......... 169 AATTTTATTT GAATTCTATT CATAACCGCA CGAATCGCAA CCAAGTATAC TAGTATTACA 76982 .......... .......... .......... .......... .......... .......... 169 TAAGTTAGAA CTTGGGTGAA CATAAGACAT AGCAATAGGG TGAACAAAAG ACAACATTTT 76922 .......... .......... .......... .......... .......... .......... 169 CTTGTCTTCC TCGATGGCTT CTCGAACAAA CAAAGGGGCA TTATGCCATA CTTAAAAAAG 76862 .......... .......... .......... .......... .......... .......... 169 AATATTTATT GGTAGGGTTC TTCTGAAACG AGCTAGCAGA TCAACCACTC CATTTTGTTC 76802 .......... .......... .......... .......... .......... .......... 169 CCTAGGTTCA TGCTCCTTGG TTCAATAGCA TTTCCATTAT TTTGAAGATG TATTACCTCG 76742 .......... .......... .......... .......... .......... .......... 169 GTTGAGTCAG GGGCAATGGT GAGTGGTGAA GGCTTAGGCT ATGTGTCAGC CTTAGGCCAT 76682 .......... .......... .......... .......... .......... .......... 169 GAACTAATGT TGCTAGATCT GTCCTTGTTA TTGAGGTGGA TGTAATTCTT GTGCTTTAAC 76622 .......... .......... .......... .......... .......... .......... 169 CTACTATCCA GTTGCCTTTT GATTCTCAGA CTATACACCC TGTCCCTCTT TTAAAGGTGA 76562 .......... .......... .......... .......... .......... .......... 169 TATAATCAAA GGGACCATCA TCATTCAATT TTAGGCCAGC TGGTAGGGGT GTCAAGGGCA 76502 .......... .......... .......... .......... .......... .......... 169 GAGATTGGTA AGAGATGTTA TTTTTGACTT CGGATTTCTG CTAGGACCAA GAAAGGCATA 76442 .......... .......... .......... .......... .......... .......... 169 CTATGTTGCT CTATCAATTA TGGACGTGAC ATTGACCTTT ACCTTGATTT CTTATAGATA 76382 .......... .......... .......... .......... .......... .......... 169 TTGTTGTTAC GATTAATTCA AATGGAAACA TCTCGAATTA GTCAAAAAAG CTAAAAACTT 76322 .......... .......... .......... .......... .......... .......... 169 CTTTATATCT CTAATACTGT TGAGCCAATT TGGATTATTA TTTATTTTTA TTTTCTCGAT 76262 .......... .......... .......... .......... .......... .......... 169 CAAGTCATGA AGGCACAGAG TAATCCAGAC CTTCCTAACT AGGGGACATC GAGAAGTATA 76202 .......... .......... .......... .......... .......... .......... 169 TGTTTGTTAG TTTCAGGTTG GCAACAGATT TTGCACAAGG GGTCTATATC TGTACCAATG 76142 .......... .......... .......... .......... .......... .......... 169 CTATGAAAAT TTAAAAGGTT GGATCTTTTG GTGGTATCCT TTTATTTAAG GGCTATTTAA 76082 .......... .......... .......... .......... .......... .......... 169 GGGCTATGTA GACCAATTTG GTAGTGAAAT TTCCTTTACT AATTAGTGTC CAATTTATTT 76022 .......... .......... .......... .......... .......... .......... 169 TGTCGCACAT GTTTGGGGCT TGGGGTATAT GGATGGAGGT AATTTCAGAA CTAAGATTCA 75962 .......... .......... .......... .......... .......... .......... 169 TTGATAATTT GAATTTAGAT CTTCAAGTGT TTATGTCCCA TTATGTATTA CGTCCCTATC 75902 .......... .......... .......... .......... .......... .......... 169 TTTGAGTAAG AGTTCAACTT TACAGAGGGG GCCTATGACT CTGCACCTTA AGGGGGTTGT 75842 .......... .......... .......... .......... .......... .......... 169 ATTTGAGAGC CATTTATCCT TCCAGAAGTT GGTTTCGTTA GCATTTCCTA GATCCTATTT 75782 .......... .......... .......... .......... .......... .......... 169 GGTGTACTGT ATGTTGTTTT TCCAGCCCTA GATGATGTTC TGCTAGGTCC TACTAACAGT 75722 .......... .......... .......... .......... .......... .......... 169 TTTGAGGTGG TGCTAGTAGG TGAATAAGTC AGTATTTCTA GCATATTCGT TTAGAAAGAG 75662 .......... .......... .......... .......... .......... .......... 169 TAAGGCCCAA AGAGAACGAG GAATCATAAA AAAGTGCTAG GCTAGTTAGG TGATAAGTGC 75602 .......... .......... .......... .......... .......... .......... 169 TAGGCTAGTT AGACACCCAA TCCACTTGAA TCCCTATCCT TAGTAATTAC GTCCCACTTT 75542 .......... .......... .......... .......... .......... .......... 169 ATCATGTGCA GTTTTCTCAT AAATTCAGTG GTTCCCTAAA CAAAGTCCTT TTGAATTTTA 75482 .......... .......... .......... .......... .......... .......... 169 TCAATGGTTT TTAATTTACT ACAGGGAGGT TAATATATTA CATATCATGA GTTGCCATAT 75422 .......... .......... .......... .......... .......... .......... 169 GGTTGAGGAA GGATTTTGCT AAGGTAGTTC TTTCTGCCAT GTCGAGAAAG TTGTTTTTCC 75362 .......... .......... .......... .......... .......... .......... 169 AATACTAAGC TTCAATTGAA GATAATCTAT TATGAATTGG AGGTCCTTTC TAAGTGGTAT 75302 .......... .......... .......... .......... .......... .......... 169 CCCATCAAAT ATTGGAACGT CCAAATATGT CCCAAAGAAA TTGTTGCAGT GGATATCCAG 75242 .......... .......... .......... .......... .......... .......... 169 ATCTATTGAT ATACTCTCTG TTACTTCGCT AAAACATTTC TTAGAAAAGA TTTTTTCAAC 75182 .......... .......... .......... .......... .......... .......... 169 TTTTTGTCCT GACCAGTAGC AAAAAGAGCC TATGACTTCA GTAATGATTC TACAACTCTT 75122 .......... .......... .......... .......... .......... .......... 169 AGAGGTTTTG GACATGAGCA ATAATTGTTG GGTTTTATTT GCCCTGATTT CTTAGCATAA 75062 .......... .......... .......... .......... .......... .......... 169 ATAGGTTTTC CTTTTAGGAA AAGGTTTTGG ATTGGCTAAT CCTTTTTCTG GTAGGAAAAG 75002 .......... .......... .......... .......... .......... .......... 169 GTTTAGGACT CTATAAATAG AGGCATGTTC CTTCTAACTT AATTAGCATT CACAATGTAG 74942 .......... .......... .......... .......... .......... .......... 169 TCTTAAGGGC TTTGAGAGTT TTGGTTAGGG GGAGAATTTA TGAGTCACAA GTTTGATACG 74882 | || |||||||||| | || .......... .......... .......... .....AGGTA TGAGTCACAA GCTT...... 188 TTATCACTTG TGTGAACCTC CCATGTATTC CGAGTGAATT GGTTGAGGTT GTTTCTCTCT 74822 .......... .......... .......... .......... .......... .......... 188 GTATTTTGTA CTCTCATATT TATAGTGGAT TTCTCATCTC CTTTGTGAAC GTATGTCGAT 74762 .......... .......... .......... .......... .......... .......... 188 TGACCGAACC ACGTTAAATC TGTGTGTCTT TTGGTATATT TCTCATTGTC TTCTTACTCG 74702 .......... .......... .......... .......... .......... .......... 188 TGGTCTTTCG AGGTCTGCTT TGCTAGCTTC CGCATTTACA TCTCTTATTT TTGGTCCTAA 74642 .......... .......... .......... .......... .......... .......... 188 AAAGTGGTAT CAGAGCCAGA TTCAATGACG GAGTTAGGTT CAGTGGTTCG ATAATCAATG 74582 .......... .......... .......... .......... .......... .......... 188 ATTGAATCAA GTTAGAAAGA GGTGTTCATC TTGACGGGTG TAGTTCTAGC CGCAACCTTT 74522 .......... .......... .......... .......... .......... .......... 188 TTGACAGTAA TGAAGATTTT GTCGGAGAAA TTGTTTCACA GAGGTTCTCT GTGTTGAGAC 74462 .......... .......... .......... .......... .......... .......... 188 ACAAATTTTG CAAAGGAGAT TATGGAGAGG AGAAGCAAGT TGTTGAATAT TAAGTAAAGA 74402 .......... .......... .......... .......... .......... .......... 188 AGGTGGACAA ATTTAATTTG TCAGAAATTC AGGCCAAGGG GGAGATTTGT TGGGTTTTAT 74342 .......... .......... .......... .......... .......... .......... 188 TTGCCCTGAT TTCTTACCAT AAATAGGTTT TCCTTTTAGG AAAAGGTTTT GGATTGACTA 74282 .......... .......... .......... .......... .......... .......... 188 ATCTTTTTTC TGGTAGGAAA AGGTTTAAGA CTCTATAAAT AGAGGCATGT TCTTTCTAAC 74222 .......... .......... .......... .......... .......... .......... 188 TTAATTAGCA TTCACAATGT AGTCTTAAGG GCTTTGAGAG TTTTGGTTAG GGGGAAAATT 74162 .......... .......... .......... .......... .......... .......... 188 TATGAGTCAC AAGCTTGATA CGTTATCACT TGTGTGAACC TCCCATGTAT TCCGAGTGAA 74102 ||||||| |||||||||| |||||||| | || ||||||| || ||||||| .......... ...CTTGATA CGTTATCACT TGTGTGAATC TCTCATGTAT TCTGAGTGAA 235 -TTGGTTGAG GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 74043 ||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| TTTGGTTGAG GTTGTTTCTC TCTGTATTTT GTATTCTCAT ATTTATAATG GATTGCTCAT 295 CTCCTTTGTG GATGTAGGTC GATTGACCGA ACCACGTTAA ATTTGTGTGT CTTTTGGTAT 73983 |||||||||| || ||||||| ||||||||| |||||||||| || | ||| | |||||||||| CTCCTTTGTG GACGTAGGTC AATTGACCGA ACCACGTTAA ATCTCTGTAT CTTTTGGTAT 355 ATTTCTCGTT GTCTTCTTAC TCGTGGTCTT TCGAGATCTG CTTTGCAAGC TTCCGCATTT 73923 |||||||||| |||||||||| |||||||||| | ||| | || |||||| ||| |||||| ||| ATTTCTCGTT GTCTTCTTAC TCGTGGTCTT TTGAGGTTTG CTTTGCTAGC TTCCGCGTTT 415 ACATCTGCTT ATTTTCGATC CTAACA 73897 ||| |||||| ||||| | || |||||| ACACCTGCTT ATTTTTGGTC CTAACA 441 hqPGS_C08SLm0119I05.1-_SGN-E389613- (74148 73897) ******************************************************************************** EST sequence 1 -strand 302 n (File: SGN-E370622-) 1 CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 61 ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 181 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CATTATCCAC CGAGTTTAGA 241 AGGTTGTGAT TAGTCCAAAG GGGCGGGTCA TAGGCATATT TCTAGGTTAT CAAAAAAAAA 301 AA Predicted gene structure (within gDNA segment 75470 to 72528): Exon 1 74118 73897 ( 222 n); cDNA 1 222 ( 222 n); score: 0.937 PPA cDNA 292 302 MATCH C08SLm0119I05.1- SGN-E370622- 0.937 222 0.735 C PGS_C08SLm0119I05.1-_SGN-E370622- (74118 73897) Alignment (genomic DNA sequence = upper lines): CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 74059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 60 ATAGTGGATT GCTCATCTCC TTTGTGGATG TAGGTCGATT GACCGAACCA CGTTAAATTT 73999 ||||| |||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 GTGTGTCTTT TGGTATATTT CTCGTTGTCT TCTTACTCGT GGTCTTTCGA GATCTGCTTT 73939 ||||||||| |||||||||| ||||||||| |||||||||| ||| ||| || | | ||| || TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 180 GCAAGCTTCC GCATTTACAT CTGCTTATTT TCGATCCTAA CA 73897 || ||||||| || |||||| |||||||||| ||| |||||| || GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CA 222 hqPGS_C08SLm0119I05.1-_SGN-E370622- (74118 73897) ******************************************************************************** EST sequence 108 +strand 550 n (File: SGN-E329886+) 1 TTTTGGTATA TTTCTCGTTG TGTTCTTACT CGTGGTCTTT CAAGGTTTGC TTTGCTAGCT 61 TCCGTGTTAC ACCTGCTTAT TTCCGATCCT AACTGTTGAA ACCTTGTTAT CTTCTTTGTT 121 CCAACACACT TTAAAAGTAC TGTCATCGCC ATTATAAGTT TTTACAATCT TGGCCTTCTT 181 CACTGATCAT ATATTCATCC ATTTATCAGA TGCACTTTCA AAGTAGTTAT CGTTTGGACT 241 AACTGCAACA AAGTAAACAA GATTCATGGA TTCAAATGTA AGAGAACCTA CTCTGTAAAA 301 AAACAAACAC ATTGGGTCAT GATAGAGGTC ATGAATATTA GTAAAACTGT GACATCTCGT 361 AACCTGAAAT AGCAAAGAAA CTAAAACCAA TTATTTTTTG AAAGAAAAGG AAAAATCAAG 421 AAAATTTCTT AAGTTAAAAA AGTGAGATTC GGTCATTTTC AAACGGTCAT AACTTCTGAT 481 TCAAGATTAG TGCTAGTTAT TATTATGGTT GGAAAGCCCA TGGAGAGATA TTTCCAACAC 541 CGTCAAGCTT Predicted gene structure (within gDNA segment 75333 to 69200): Exon 1 73991 73899 ( 93 n); cDNA 1 92 ( 92 n); score: 0.892 Intron 1 73898 71455 (2444 n); Pd: 0.000 (s: 0.84), Pa: 0.260 (s: 0) Exon 2 71454 71427 ( 28 n); cDNA 93 119 ( 27 n); score: 0.571 Intron 2 71426 70392 (1035 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 70391 70375 ( 17 n); cDNA 120 136 ( 17 n); score: 0.706 MATCH C08SLm0119I05.1- SGN-E329886+ 0.892 138 0.251 C PGS_C08SLm0119I05.1-_SGN-E329886+ (73991 73899,71454 71427,70391 70375) Alignment (genomic DNA sequence = upper lines): TTTTGGTATA TTTCTCGTTG TCTTCTTACT CGTGGTCTTT CGAGATCTGC TTTGCAAGCT 73932 |||||||||| |||||||||| | |||||||| |||||||||| | || | ||| ||||| |||| TTTTGGTATA TTTCTCGTTG TGTTCTTACT CGTGGTCTTT CAAGGTTTGC TTTGCTAGCT 60 TCCGCATTTA CATCTGCTTA TTTTCGATCC TAACAATAAT TTGTCATTAA AGAAAAGGTG 73872 |||| ||| || ||||||| ||| |||||| ||| TCCG-TGTTA CACCTGCTTA TTTCCGATCC TAA....... .......... .......... 92 CAAGACACTT GATCCTCAAA TGCTAACTTT TACAGGGGCT CGGGTCTTTA AAATGACTGC 73812 .......... .......... .......... .......... .......... .......... 92 TTGTTCAATA TGTTGAGATA TGACCTCCAT TCATAGTATG AATATGTATG GGGACATAGA 73752 .......... .......... .......... .......... .......... .......... 92 GTCTCCTTGA CCAATTCCTC TAGTGAAGTT AAAGAACTCA ACTCTAGTAC CATTTATTAG 73692 .......... .......... .......... .......... .......... .......... 92 GATAGACGAT TGGCTAGAGC TAATGCTAAA CATTATAAGA TTACTAAGTT TTTCTAGGAA 73632 .......... .......... .......... .......... .......... .......... 92 GTTGAAGCAT TGGAGGGTAT GCCTAGAGAA TGACCACTCA ATTTTATCTA AAGCTTTCTC 73572 .......... .......... .......... .......... .......... .......... 92 AAGGTGTATT TTTTTCATGA AGCAACCTCT CTTCCCTTTC ATTTTTTTTC AAAAATGGGA 73512 .......... .......... .......... .......... .......... .......... 92 GACTATTTTT AGTATAATTA TAACTTTATC TGTTGCTTGT CTATTTTAGA GGAAGCTAAA 73452 .......... .......... .......... .......... .......... .......... 92 CTGGCATGGG GCTATTAGTT TGTCCCTGAG ACCCCTTAAT CTTCTAAATA TAGTTTTGGT 73392 .......... .......... .......... .......... .......... .......... 92 GATAATTTTA TTGGAGATAT TATTACAGAG GCTGATGGGG CAAAAATTCT TAAGAGATGA 73332 .......... .......... .......... .......... .......... .......... 92 TGCAATCTTG CACTTTGGAA TGAGGCATAC ATGAGTGAGA CTTATGGAGT CGAGAATAGC 73272 .......... .......... .......... .......... .......... .......... 92 TCCCTCCTTG AAGGCTTTTT GGCATAATGT GTACACCCAT GGACCCACAA TATGCCAGTA 73212 .......... .......... .......... .......... .......... .......... 92 TTTTTTGTAG AAGAAAGGGT GGAAAGAAAA GACTATGGAT GTTATTTCCT CCATAGTAGG 73152 .......... .......... .......... .......... .......... .......... 92 CAAATTACTA AGGAGAAGGT AATCCTCTTG TTTGATCGTA GTTGGACAAA CCTTGGTAGT 73092 .......... .......... .......... .......... .......... .......... 92 AAGGTTGTGT GATTGATGGT GCTGCTTAGT GAACAATTCA TTATAATAGG GATGTGGTGA 73032 .......... .......... .......... .......... .......... .......... 92 ATTGGATAAT GTCATTTTGA TCATGAATCC AAGTCCCATC GTATGTTTTG AAGGTCTGAA 72972 .......... .......... .......... .......... .......... .......... 92 TATAGTTTTC CTACACCTAC TCAGGTACTA ACATGGAAGA ACTTAGTATT TGCATTCCCC 72912 .......... .......... .......... .......... .......... .......... 92 TCTTGTAGCC AGTTATTTCT TGATTTAAGT TTCCAAAAAT CCTCATCTTT TTTTAGAATT 72852 .......... .......... .......... .......... .......... .......... 92 GTGTTGTAGT CCTCAATTAA GCTTTGTTCC AATCTTAACT GCAAAACACT ATTGAGGTAG 72792 .......... .......... .......... .......... .......... .......... 92 TTTTTTTTTA CTTATGAATA CCTCCTATTT TATTAAGGAT TACTCTCTTT TGGTGAAAAA 72732 .......... .......... .......... .......... .......... .......... 92 AATATTCCCA AATGTGTCTC CATTCCAATT TGTGACATTT TTTTCAAAAT TTGAAATAGC 72672 .......... .......... .......... .......... .......... .......... 92 TTCTATAAGA TTTAAGGCAC AAGCCGAAGA CTTATTGATA ATATTTGGGA GCTTCAAGTG 72612 .......... .......... .......... .......... .......... .......... 92 TGAGGTCCAC ATGGTTTCAA ATCTAAAGAT GCAGTTATTA GTGGTCACCT TTATATATTA 72552 .......... .......... .......... .......... .......... .......... 92 AGGGAAAGTA TGAGGAGGCA ATGATCAGAG TGGGATCTAG GTAGGTATAT AACTTGGGCA 72492 .......... .......... .......... .......... .......... .......... 92 TTTGGGTAGA GTAGCAACCA TTTGTTATAT GAAGGTAGAA CCTTTCAAAA ATAAGTGCTT 72432 .......... .......... .......... .......... .......... .......... 92 TTTTGTTCTT GAAATAATTA TTCATCCAGG TGTACCGGCT ACCCTGAAGC CCATATCAAT 72372 .......... .......... .......... .......... .......... .......... 92 GAACTAGCAA TAATTAACTA TCTCCAAAAA TCTTCACTAC TGAATAAATT TAAGGGGCCA 72312 .......... .......... .......... .......... .......... .......... 92 CCTCCTTTAT ATATGTGCTA TTGAGAAGTT CATTAAAATA ACCCCTAATT AGCCATTTTC 72252 .......... .......... .......... .......... .......... .......... 92 TATTATTGTT ATTATCAATT GTACATAGGT TTTCCTATAA GATTTTACGC ATATTCCAAA 72192 .......... .......... .......... .......... .......... .......... 92 ATTCTAGCAT ATATACTACT AAATAGCCAT TGGTCACCAG AGCCACTTAC CTTGATCATA 72132 .......... .......... .......... .......... .......... .......... 92 TCATGGATTT CCTGCTCAGT ACTAGCTATT TCGTCGAGCT CCAAATTATC TTCCCATAGG 72072 .......... .......... .......... .......... .......... .......... 92 AAGATAAAAC CACCAACATT ACATACTGTT ATTTTGATCA TTTGATTGAA GGGAAAGTAA 72012 .......... .......... .......... .......... .......... .......... 92 TCTAGCAAGC CTTGGTGGCT TTACATTTTC GTTGTCAGTA ATGCCACTAA AGGGGGACTA 71952 .......... .......... .......... .......... .......... .......... 92 TGTCAATCAA GTAATGCCCT AAAGTTCCTT CGGGAGTCTG CACCATTCCC ACATCTACAG 71892 .......... .......... .......... .......... .......... .......... 92 TTCCAGACTA CTAAATTCAT AGATCTATTC ATGTGGTGGT GGGGGGGGGG GGTTATCATT 71832 .......... .......... .......... .......... .......... .......... 92 GCATCCAACC TTAAGTTCCT ATCTGTAACA TTTTGGTTTT TCCTTATTAT GAGGTTCATT 71772 .......... .......... .......... .......... .......... .......... 92 ATTAAGACGT AGTTCCCTAT TTTTGGGTTG AATGGGGTCT TGATATCTAT CGAGATTTTT 71712 .......... .......... .......... .......... .......... .......... 92 GATAGATCGA GGGGACTAAT AAGGATGAAC TTTCTTTTCG AATCTCTCTC GAAATATCAT 71652 .......... .......... .......... .......... .......... .......... 92 GACCCTTACT TCTTTTAACA CTGAGACTTT CGATTATGTT TCTCTCATTA CCTCTAGTGC 71592 .......... .......... .......... .......... .......... .......... 92 ATCTTTGATT TCCTCGGTGT TTTTCTATAC CAGGGAAATT GGAACTAAGT TCAAACGGGG 71532 .......... .......... .......... .......... .......... .......... 92 AGGTACCTGC GAGGTTGCAA CAACATTGTT CGTCGTCTCA GTACCAGTGT TGGCCACTGA 71472 .......... .......... .......... .......... .......... .......... 92 TCCCGTTGGG GTTGTAGCAA GTTGGAATTG AGTCACCCCC ATTGTGTGTC CTTGCATTAT 71412 | |||| || || | | | |||| .......... .......C-T GTTGAAACCT TGTTATCTTC TTTGT..... .......... 119 CCAATAGTGG TAAAGAGGAT CCATGTTTTG TCGGCTTTTG AGGACAAGGG TAAGAAATAG 71352 .......... .......... .......... .......... .......... .......... 119 AGTTTCCAAA AGTTGCGGGG TTTGCATGGG TGGTGGAATG GGGTTTCCCA GGTTAGTATA 71292 .......... .......... .......... .......... .......... .......... 119 TGGAAAAATG GCATGACAGG GGTTGGTAGT TCGTTGGCAG GTGGAACATA CTCATTATCC 71232 .......... .......... .......... .......... .......... .......... 119 ATAGGTAACT GTTGTATGAT TCTGTCAACA TTCATATCCT ATTCGTCACC AGCAGAGCCA 71172 .......... .......... .......... .......... .......... .......... 119 AGAGGGGAGG ACTTTGGATT ATGATTGTAC TTCTCTGTTG TCCATCAGAA CACTGAAAGT 71112 .......... .......... .......... .......... .......... .......... 119 TAGGTTCTGG TTTTGGAGAC TCACCTCCAT AGGATGGGAT GGATGGAGAA GGTGAAAGGC 71052 .......... .......... .......... .......... .......... .......... 119 TTGCACACAC TGGGTGACCC TTGGTAGTTA TGAGTTCACC CGAAAGAGTT GTATCAGAGT 70992 .......... .......... .......... .......... .......... .......... 119 ATTTTGGTTC ATTTTCAGAA CAGTAGGAGT ATCTGGGTTG TTCAAATGGT TGTTCGTTAT 70932 .......... .......... .......... .......... .......... .......... 119 CATCGTAGAA AGGATGAGAG TAATGTTCTG GCCATTTTTA TATAGAGAAG AAGTTTGTAA 70872 .......... .......... .......... .......... .......... .......... 119 AGGTGTTGAG GTAATAACTT TATTATCTGA GACTTTAGGT ACTTAGGAAC TATTAATAAA 70812 .......... .......... .......... .......... .......... .......... 119 AGAATTATTA GTGTTGGTCG GTATTCCTTA AAGGGTAAAA GTTCTTGTGG GGTCAATGTT 70752 .......... .......... .......... .......... .......... .......... 119 AACCCTTAGA AATAAGGGTT AAAAAATCTT TGATAGTTGC TCTCTTAGAT ACGCCAACTA 70692 .......... .......... .......... .......... .......... .......... 119 GAGGCGTGAG TTGTCTAAAT ACATGGCTAA GGGGTTACCA CATCAAAAAG GTTACTTTTG 70632 .......... .......... .......... .......... .......... .......... 119 GAGTTATTAT TTGGGGAAGT TGAAGGGGAA ACTACTAGGT CAGTAGTAGT AGGGTGTAGG 70572 .......... .......... .......... .......... .......... .......... 119 GAGTAGATTT TAGGAGGCGT GTGAGGTGTT TGGTCCTCAA CCGAATCTTC AATAAAGGTA 70512 .......... .......... .......... .......... .......... .......... 119 GTGGCATGTC TTGGGTTTAG AGCAGTTGTT TTGTCATCAT TACTAGCGTC AAATCTATCC 70452 .......... .......... .......... .......... .......... .......... 119 TCACATCCGG TGGGTACAAG TTATTATAGC GATTTGAAGT ACTGGTTAGG TCCCCAATAG 70392 .......... .......... .......... .......... .......... .......... 119 TGCAGGAAAC TTTTAAA 70375 | || | || ||| ||| TCCAACACAC TTTAAAA 136 hqPGS_C08SLm0119I05.1-_SGN-E329886+ (73991 73899) ******************************************************************************** EST sequence 26 -strand 574 n (File: SGN-E206285-) 1 AAACATATAG GGCCAAGCAA GTTCACGTAT CATAGATGTT TGTTGGGTTT TATTTGCTCT 61 AAATTTCTTA CCATAAATAG ATTTTCCTTG TAGGAAAAGG TTTTGGATTG ACTAATCCTT 121 TTCTTGTAGG GAAAGGTTTA GGATTCTATA AATAGAGGCA TGTTCCTTTT AACTTAGTTA 181 ACATTCACAA TGTAGTCTTA AGGGCTTTGA GAGTTTTGGT TAGAGGGAGA ATTTGTGGGT 241 CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT GAATTGGTTG 301 AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC ATCTCCTTTG 361 TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT ATATTTCTCG 421 TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT TTACACCTGC 481 TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA AGCCCTTGCT 541 TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 77042 to 72811): Exon 1 74356 73908 ( 449 n); cDNA 39 487 ( 449 n); score: 0.919 MATCH C08SLm0119I05.1- SGN-E206285- 0.919 449 0.782 C PGS_C08SLm0119I05.1-_SGN-E206285- (74356 73908) Alignment (genomic DNA sequence = upper lines): TTTGTTGGGT TTTATTTGCC CT-GATTTCT TACCATAAAT AGGTTTTCCT TTTAGGAAAA 74298 |||||||||| ||||||||| || |||||| |||||||||| || ||||||| | |||||||| TTTGTTGGGT TTTATTTGCT CTAAATTTCT TACCATAAAT AGATTTTCCT TGTAGGAAAA 98 GGTTTTGGAT TGACTAATCT TTTTTCTGGT AGGAAAAGGT TTAAGACTCT ATAAATAGAG 74238 |||||||||| ||||||||| |||||| || ||| |||||| ||| || ||| |||||||||| GGTTTTGGAT TGACTAATC- CTTTTCTTGT AGGGAAAGGT TTAGGATTCT ATAAATAGAG 157 GCATGTTCTT TCTAACTTAA TTAGCATTCA CAATGTAGTC TTAAGGGCTT TGAGAGTTTT 74178 |||||||| | | ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GCATGTTCCT TTTAACTTAG TTAACATTCA CAATGTAGTC TTAAGGGCTT TGAGAGTTTT 217 GGTTAGGGGG AAAATTTATG AGTCACAAGC TTGATACGTT ATCACTTGTG TGAACCTCCC 74118 |||||| ||| | ||||| || ||||||||| |||||||||| || ||||||| |||||||||| GGTTAGAGGG AGAATTTGTG GGTCACAAGC TTGATACGTT ATTACTTGTG TGAACCTCCC 277 ATGTATTCCG AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT CTCATATTTA 74058 |||||||| | |||||||||| ||||| |||| ||| |||||| |||||||||| |||||||||| ATGTATTCTG AGTGAATTGG TTGAGATTGT TTCCCTCTGT ATTTTGTACT CTCATATTTA 337 TAGTGGATTG CTCATCTCCT TTGTGGATGT AGGTCGATTG ACCGAACCAC GTTAAATTTG 73998 |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| ||||||| | TAGTGGATTG CTCATCTCCT TTGTGGACAT AGGTCGATTG ACCGAACCAC GTTAAATCTT 397 TGTGTCTTTT GGTATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG ATCTGCTTTG 73938 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | || ||| TGTGTCTTTT GGTATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAT GTTAGCATTG 457 CAAGCTTCCG CATTTACATC TGCTTATTTT 73908 | |||||||| | |||||| | |||||||||| CTAGCTTCCG CGTTTACACC TGCTTATTTT 487 hqPGS_C08SLm0119I05.1-_SGN-E206285- (74356 73908) ******************************************************************************** EST sequence 28 -strand 344 n (File: SGN-E206496-) 1 ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 61 GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 121 ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 181 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 241 TTACACCTGC TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA 301 AGCCATTGCT TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 75786 to 72811): Exon 1 74164 73908 ( 257 n); cDNA 1 257 ( 257 n); score: 0.930 MATCH C08SLm0119I05.1- SGN-E206496- 0.930 257 0.747 C PGS_C08SLm0119I05.1-_SGN-E206496- (74164 73908) Alignment (genomic DNA sequence = upper lines): ATTTATGAGT CACAAGCTTG ATACGTTATC ACTTGTGTGA ACCTCCCATG TATTCCGAGT 74105 |||| || || |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 60 GAATTGGTTG AGGTTGTTTC TCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 74045 |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| |||||||||| GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 120 ATCTCCTTTG TGGATGTAGG TCGATTGACC GAACCACGTT AAATTTGTGT GTCTTTTGGT 73985 |||||||||| |||| |||| |||||||||| |||||||||| |||| | ||| |||||||||| ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 180 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGAGATC TGCTTTGCAA GCTTCCGCAT 73925 |||||||||| |||||||||| |||||||||| |||||| | || |||| | |||||||| | ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 240 TTACATCTGC TTATTTT 73908 ||||| |||| ||||||| TTACACCTGC TTATTTT 257 hqPGS_C08SLm0119I05.1-_SGN-E206496- (74164 73908) ******************************************************************************** EST sequence 82 +strand 456 n (File: SGN-E205773+) 1 AACAATTAGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTACC ATGTATTCTG 301 AGTGAATTGG TTGAAGCTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTACT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGATGGCTT CTTACTCGTG GTCTTT Predicted gene structure (within gDNA segment 75557 to 70301): Exon 1 74355 73952 ( 404 n); cDNA 54 456 ( 403 n); score: 0.918 MATCH C08SLm0119I05.1- SGN-E205773+ 0.918 404 0.886 C PGS_C08SLm0119I05.1-_SGN-E205773+ (74355 73952) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TGATTTCTTA CCATAAATAG GTTTTCCTTT TAGGAAAAGG 74296 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGGATT TTATTTGCCC TGATTTCTTA CCATAAATAG GTTTTCCTTT TAGGAAAAGG 113 TTTTGGATTG ACTAATCTTT TTTCTGGTAG GAAAAGGTTT AAGACTCTAT AAATAGAGGC 74236 ||||| |||| ||||||| | ||||| |||| |||||||||| | |||||||| ||||||| | TTTTGAATTG ACTAATC-CT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCTTTC TAACTTAATT AGCATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGG 74176 || ||| || ||||||||| |||||||||| |||||||||| | ||||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTAGTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGGGGGAA AATTTATGAG TCACAAGCTT GATACGTTAT CACTTGTGTG AACCTCCCAT 74116 |||| |||| ||| | || | |||||||||| |||| ||||| |||||||||| ||||| |||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTACCAT 292 GTATTCCGAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 74056 |||||| ||| |||||||||| || | ||||| |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAAGCTGTTT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTGCT CATCTCCTTT GTGGATGTAG GTCGATTGAC CGAACCACGT TAAATTTGTG 73996 |||||||||| ||||| |||| ||||| |||| || ||||||| |||||||||| ||||| | || GTGGATTGCT CATCTACTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGG TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTT 73952 ||||||||| |||||||||| | || ||||| |||||||||| |||| TGTCTTTTGA TATATTTCTC GATGGCTTCT TACTCGTGGT CTTT 456 hqPGS_C08SLm0119I05.1-_SGN-E205773+ (74355 73952) ******************************************************************************** EST sequence 14 -strand 595 n (File: SGN-E271645-) 1 CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 61 ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 181 TGCTAGCTTC CGCATTTACA CCTGCTTATT TCGATCCTAA CAAGTGGGTA TTAGAGCCAT 241 TTAATGACAG AGGTCAGGTT CAGTGGTTCG ATAATCGATT ATTGGACCAG GTTAGAAAGA 301 GGGTGGTGGT TCATCTTGAC AGGTGGTAGG TTCTAGCCGC AATCTTTTTG ACAGTAATGA 361 AGATTTTGTT GGAGAAATTG TTTCAGAGAG GTTTTCTATG GTTGAGACAT AAATTTTACA 421 AAGGAGATTA AGAAGAAGAG AAGCAAGTTG TTGAAGATTA AATGAAGAAT GTGGAGAAAT 481 TTATTTTGGT CAGAAATACA GGCCAAGGGG GAGGAGATTT GTTGGATTTT ATTTACCATA 541 ATTTCTTAAC ATAAATAGGT TTTCCTTTTA GGGAAAAATT TTGGATTGAC TAATC Predicted gene structure (within gDNA segment 75704 to 73679): Exon 1 74860 74279 ( 582 n); cDNA 1 595 ( 595 n); score: 0.842 MATCH C08SLm0119I05.1- SGN-E271645- 0.842 582 0.978 C PGS_C08SLm0119I05.1-_SGN-E271645- (74860 74279) Alignment (genomic DNA sequence = upper lines): CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 74801 ||| |||||| || ||||||| ||||| |||| |||||||||| ||| |||||| |||||||||| CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 60 ATAGTGGATT TCTCATCTCC TTTGTGAACG TATGTCGATT GACCGAACCA CGTTAAATCT 74741 |||||||||| ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 GTG-TGTCTT TTGGTATATT TCTCATTGTC TTCTTACTCG TGGTCTTTCG AGGTCTGCTT 74682 || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| | || ||||| TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 180 TGCTAGCTTC CGCATTTACA TCT-CTTATT TTTGGTCCTA AAAAGT-GGT ATCAGAGCCA 74624 |||||||||| |||||||||| || |||| | || | ||||| | |||| ||| || |||||| TGCTAGCTTC CGCATTTACA CCTGCTTA-T TTCGATCCTA ACAAGTGGGT ATTAGAGCC- 238 GATTCAATGA CGGA-GTTAG GTTCAGTGGT TCGATAATCA ATGATTGAAT CAAGTTAGAA 74565 ||| ||||| | || || || |||||||||| ||||||||| || |||| | || ||||||| -ATTTAATGA CAGAGGTCAG GTTCAGTGGT TCGATAATCG ATTATTGGAC CAGGTTAGAA 297 AGA----GGT -GTTCATCTT GACGGGT-GT A-GTTCTAGC CGCAACCTTT TTGACAGTAA 74512 ||| ||| ||||||||| ||| ||| || | |||||||| ||||| |||| |||||||||| AGAGGGTGGT GGTTCATCTT GACAGGTGGT AGGTTCTAGC CGCAATCTTT TTGACAGTAA 357 TGAAGATTTT GTCGGAGAAA TTGTTTCACA GAGGTTCTCT GT-GTTGAGA CACAAATTTT 74453 |||||||||| || ||||||| |||||||| | |||||| ||| | ||||||| || ||||||| TGAAGATTTT GTTGGAGAAA TTGTTTCAGA GAGGTTTTCT ATGGTTGAGA CATAAATTTT 417 GCAAAGGAGA TTATGGAGAG GAGAAGCAAG TTGTTGAATA TTAAGTAAAG AAGGTGGACA 74393 ||||||||| ||| | ||| |||||||||| |||||||| | |||| | ||| || ||||| | ACAAAGGAGA TTAAGAAGAA GAGAAGCAAG TTGTTGAAGA TTAAATGAAG AATGTGGAGA 477 AATTTAATTT -GTCAGAAAT TCAGGCCAAG GGGGA-GA-- TTTGTTGGGT TTTATTTGCC 74337 |||||| ||| ||||||||| ||||||||| ||||| || |||||||| | ||||||| || AATTTATTTT GGTCAGAAAT ACAGGCCAAG GGGGAGGAGA TTTGTTGGAT TTTATTTACC 537 CTGATTTCTT ACCATAAATA GGTTTTCCTT TTAGGAAAAG GTTTTGGATT GACTAATC 74279 | ||||||| | |||||||| |||||||||| ||||| ||| ||||||||| |||||||| ATAATTTCTT AACATAAATA GGTTTTCCTT TTAGGGAAAA ATTTTGGATT GACTAATC 595 hqPGS_C08SLm0119I05.1-_SGN-E271645- (74860 74279) ******************************************************************************** EST sequence 80 +strand 490 n (File: SGN-E205772+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTACTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGA TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC Predicted gene structure (within gDNA segment 76157 to 69961): Exon 1 75097 74662 ( 436 n); cDNA 54 488 ( 435 n); score: 0.922 MATCH C08SLm0119I05.1- SGN-E205772+ 0.922 436 0.890 C PGS_C08SLm0119I05.1-_SGN-E205772+ (75097 74662) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TGATTTCTTA GCATAAATAG GTTTTCCTTT TAGGAAAAGG 75038 ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTGTTGGATT TTATTTGCCC TGATTTCTTA CCATAAATAG GTTTTCCTTT TAGGAAAAGG 113 TTTTGGATTG GCTAATCCTT TTTCTGGTAG GAAAAGGTTT AGGACTCTAT AAATAGAGGC 74978 ||||| |||| ||||||| | ||||| |||| |||||||||| |||||||||| ||||||| | TTTTGAATTG ACTAATCC-T TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCCTTC TAACTTAATT AGCATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGG 74918 || |||||| ||||||||| |||||||||| ||||| |||| | ||||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTACTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGGGGGAG AATTTATGAG TCACAAGTTT GATACGTTAT CACTTGTGTG AACCTCCCAT 74858 |||| ||||| ||| | || | ||||||| || |||| ||||| |||||||||| |||||||||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 292 GTATTCCGAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 74798 |||||| ||| |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAGGTTGATT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTTCT CATCTCCTTT GTGAACGTAT GTCGATTGAC CGAACCACGT TAAATCTGTG 74738 ||||||| || |||||||||| ||| ||||| || ||||||| |||||||||| ||||||| || GTGGATTGCT CATCTCCTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGG TATATTTCTC ATTGTCTTCT TACTCGTGGT CTTTCGAGGT CTGCTTTGCT 74678 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| || ||||| TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 472 AGCTTCCGCA TTTACA 74662 ||||||||| |||||| AGCTTCCGCG TTTACA 488 hqPGS_C08SLm0119I05.1-_SGN-E205772+ (75097 74662) ******************************************************************************** EST sequence 2 -strand 629 n (File: SGN-E325909-) 1 TTTTCACGAT ATTGCTGCTG CAATATCACA TTCGAGGCAT GAAAAGTAGT AAGTGTCTTT 61 TCCAACATGT CCTCATCTTT TATAGTCTCC CCACATAATT TCAACTGGGA GGTTATCCTG 121 AATACAGCAG AGTTGTATTC AATTACGGTC TTAAAATCTT GAAACCGTAA ATGCATCCAC 181 TCATAACGAG CTCTTGGCAA CACTGTTGCC TTTAGGTGGT CATATCTCCC CTTTAAATCA 241 GTCCACAATT CAAGTGGATC TTTCACTGTC AGATATTCAA TCTTCAGGCC CTCATCAAGA 301 TGATGACGAA GGAAAATCAT AGCCTTCGCC TTATCTTGAC TCGATGCTTC ATTTCCCTGA 361 GTAATAGTGG CATCAAGACC TTTAGCAGCC AAGTGAATCT CAGCATCGAG TACCCATGAA 421 AGATAATTCT TTCCAGAAAT ATCTAATGCC ACAAACTCAA GTTTGGATAA ATTCGACATA 481 ATGAAAATTA TGAGAGAATA TGTGAATTAA ATAAAAATAT TTATATAGTA CCTTTGCAAG 541 TAGCAATTTC GTGCTGATAA CGTGTTATAA AAGAACTTAC TAAAATTCTT GTTAGAAAAG 601 AACTTACTAG AATTCTAAAA GAAAGAAAA Predicted gene structure (within gDNA segment 79625 to 76690): Exon 1 79015 78451 ( 565 n); cDNA 1 566 ( 566 n); score: 0.955 MATCH C08SLm0119I05.1- SGN-E325909- 0.955 565 0.898 C PGS_C08SLm0119I05.1-_SGN-E325909- (79015 78451) Alignment (genomic DNA sequence = upper lines): TTTTCACGAT ATTGCTGCTG CAATATCACA TTTGAGGCAT GGAAAGTAGT AAATGTCTTT 78956 |||||||||| |||||||||| |||||||||| || ||||||| | |||||||| || ||||||| TTTTCACGAT ATTGCTGCTG CAATATCACA TTCGAGGCAT GAAAAGTAGT AAGTGTCTTT 60 TCCAACATGT CCTCATCTTT TATAGTCTCC CCACATAATT TTAACGGGGA GGTTATCCTG 78896 |||||||||| |||||||||| |||||||||| |||||||||| | ||| |||| |||||||||| TCCAACATGT CCTCATCTTT TATAGTCTCC CCACATAATT TCAACTGGGA GGTTATCCTG 120 AATACAACAG AGTTGTATTC AATTACGATC TTAAAATCTT GAAACTGTAA ATGCATCCAC 78836 |||||| ||| |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| AATACAGCAG AGTTGTATTC AATTACGGTC TTAAAATCTT GAAACCGTAA ATGCATCCAC 180 TCATAACGAG CTCTTGGCAA CACTGTTGTC TTTAGGTGGT CATATCTCCC CTTTAAATCA 78776 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TCATAACGAG CTCTTGGCAA CACTGTTGCC TTTAGGTGGT CATATCTCCC CTTTAAATCA 240 GTCCACAATT CAAGTAGATT TTTTACCGTC AGATATTCAA TCTTCAGGCC CTCATCAAGA 78716 |||||||||| ||||| ||| ||| || ||| |||||||||| |||||||||| |||||||||| GTCCACAATT CAAGTGGATC TTTCACTGTC AGATATTCAA TCTTCAGGCC CTCATCAAGA 300 TGATGACGAA GGAAAATCAT AGCCTTCGCC TTATCTTGAC TTGTTGCTTC ATTTCTCTGA 78656 |||||||||| |||||||||| |||||||||| |||||||||| | | |||||| ||||| |||| TGATGACGAA GGAAAATCAT AGCCTTCGCC TTATCTTGAC TCGATGCTTC ATTTCCCTGA 360 GTAATAGTGG CATCACGTCC TTTAGCAGCC AAGTGAATCT CAGCATCGAG TACCAATGAA 78596 |||||||||| ||||| | || |||||||||| |||||||||| |||||||||| |||| ||||| GTAATAGTGG CATCAAGACC TTTAGCAGCC AAGTGAATCT CAGCATCGAG TACCCATGAA 420 AGATAATTCT TTCCAGAAAT ATCTAATGCC ACAAACTCAA GTTTGGATAA ATTCGACATA 78536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAATTCT TTCCAGAAAT ATCTAATGCC ACAAACTCAA GTTTGGATAA ATTCGACATA 480 AT-AAAATTA TGAGAGAATA TGTGAATCAA ATAAAAATAT TTATATAATA CCTTTGCAAG 78477 || ||||||| |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| ATGAAAATTA TGAGAGAATA TGTGAATTAA ATAAAAATAT TTATATAGTA CCTTTGCAAG 540 TAGCAACTTC ATGCTGATAA CGTGTT 78451 |||||| ||| ||||||||| |||||| TAGCAATTTC GTGCTGATAA CGTGTT 566 hqPGS_C08SLm0119I05.1-_SGN-E325909- (79015 78451) ******************************************************************************** EST sequence 35 -strand 572 n (File: SGN-E206250-) 1 AAGGTGTGCC CACGTGAATT CTCAATGATT CTGTGCATCA TATTAAATCC GGGATGGCCC 61 AACCGGTCAT ACCAAATAAT AGAATCATTA AAATTAGTAA ACCTTTTGTT TACTACGACA 121 TGTGATTCAA CTGTACTTAC ACTTGTATAG TAGAACCTAG AAGAAAATGC ACGTAATTTT 181 TCATGCACAA TTTTCTTCTG TACATTAATT GTAGTAATGT AAAGGCATTC ATCCTTTCCT 241 TCATTAGTCG TCTCAACGTG ATAGCCATTT TGGCGAATTA CTCTGAAACT TAATAAGTTT 301 CTTTGTGACT TACTACGGTA TAATGCATTA CAAATGTCCA ATATTGTCTC TCCAGGTTGT 361 AATAAGGTCG CTCTTCCAGA GCTCTCAATT AATTTTGTAC TACCTGATAT TGTGTTGACA 421 TATGTCATTT TCATAACCAA ATTAGAAAAG TATTTCTTTT CTTTTCTTTT AATATTGTAT 481 GTGTAGTAGC ACTATGAAAA AGGTATACAT CTCCATTACT CATCTTGAAT CCAACTGACA 541 ATTGGAGATT TCTATGCAAG TAGCAAATTC GT Predicted gene structure (within gDNA segment 81328 to 78319): Exon 1 80277 79901 ( 377 n); cDNA 1 377 ( 377 n); score: 0.875 MATCH C08SLm0119I05.1- SGN-E206250- 0.875 377 0.659 C PGS_C08SLm0119I05.1-_SGN-E206250- (80277 79901) Alignment (genomic DNA sequence = upper lines): AAGGTGTGCC CATGTGAATT CTCAATGATT TTGGGCATCA TATCAAATTC GGGATGGCCC 80218 |||||||||| || ||||||| |||||||||| || |||||| ||| |||| | |||||||||| AAGGTGTGCC CACGTGAATT CTCAATGATT CTGTGCATCA TATTAAATCC GGGATGGCCC 60 AACCGGTCAT GTCAAATGAT TAAATCATTA AAATTAGTTA ACCTTTTATT TACTACGGCA 80158 |||||||||| ||||| || |||||||| |||||||| | ||||||| || ||||||| || AACCGGTCAT ACCAAATAAT AGAATCATTA AAATTAGTAA ACCTTTTGTT TACTACGACA 120 TGTGATTCAA CTATACTTAT ACTTGTATAG TACAACCCAT AAGAAAGTGC AGGTAATTTT 80098 |||||||||| || |||||| |||||||||| || |||| | |||||| ||| | |||||||| TGTGATTCAA CTGTACTTAC ACTTGTATAG TAGAACCTAG AAGAAAATGC ACGTAATTTT 180 TCATGCACGG TTTTCTTCTT TACATTAATT GTAGTAATGT AAAGGTATTA GTCCTTTCCT 80038 |||||||| ||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| TCATGCACAA TTTTCTTCTG TACATTAATT GTAGTAATGT AAAGGCATTC ATCCTTTCCT 240 TCATTAGTCG TGTCAACATG ATAGCCATTT TGGCGAATAA CTTTGAAACT TAATAAGTTT 79978 |||||||||| | ||||| || |||||||||| |||||||| | || ||||||| |||||||||| TCATTAGTCG TCTCAACGTG ATAGCCATTT TGGCGAATTA CTCTGAAACT TAATAAGTTT 300 CTTTGAGACT TACTACAATA TAATGCATTA TCAGTGCTTA ATATTGTCTC TCCAGGTAGT 79918 ||||| |||| |||||| || |||||||||| | || | |||||||||| ||||||| || CTTTGTGACT TACTACGGTA TAATGCATTA CAAATGTCCA ATATTGTCTC TCCAGGTTGT 360 AAGAATTTTG TACTACC 79901 || || | | || || AATAAGGTCG CTCTTCC 377 hqPGS_C08SLm0119I05.1-_SGN-E206250- (80277 79901) ******************************************************************************** EST sequence 38 -strand 367 n (File: SGN-E332350-) 1 CATGCCAAAT GATAAAATCA TTAAAATTAG TAAACCTTTT GTTTACTACG GCATGTGATT 61 CAACTGTACT TATACTTGTA TAGTACAACC CAGAAGAAAA TGCAGGTAAT TTTTCATGCA 121 CAATTTTCTT CTCAACATTA ATTGTAGTAA TGTAAAGGTA TTCAACCTTT CCTTCATTAG 181 CCGTCTCAAC ATGATAGCCA TTTTGGCGAA TAACTTTGAA ACTTAATAAG TTTCTTTGAG 241 ACTTACTACA ATATAATGCA TTATCAATGC TTAATATTGT CCCTCCAGGT AGTAATAAGG 301 TCGCTCTTCC AGAGCCCTCA ATTAATTTTG TGTTGACATA TGCCATTTTC ATAACCAAAT 361 TAGAAAA Predicted gene structure (within gDNA segment 80946 to 78335): Exon 1 80210 79923 ( 288 n); cDNA 1 288 ( 288 n); score: 0.938 MATCH C08SLm0119I05.1- SGN-E332350- 0.938 288 0.785 C PGS_C08SLm0119I05.1-_SGN-E332350- (80210 79923) Alignment (genomic DNA sequence = upper lines): CATGTCAAAT GATTAAATCA TTAAAATTAG TTAACCTTTT ATTTACTACG GCATGTGATT 80151 |||| ||||| ||| |||||| |||||||||| | |||||||| ||||||||| |||||||||| CATGCCAAAT GATAAAATCA TTAAAATTAG TAAACCTTTT GTTTACTACG GCATGTGATT 60 CAACTATACT TATACTTGTA TAGTACAACC CATAAGAAAG TGCAGGTAAT TTTTCATGCA 80091 ||||| |||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| CAACTGTACT TATACTTGTA TAGTACAACC CAGAAGAAAA TGCAGGTAAT TTTTCATGCA 120 CGGTTTTCTT CTTTACATTA ATTGTAGTAA TGTAAAGGTA TTAGTCCTTT CCTTCATTAG 80031 | ||||||| || |||||| |||||||||| |||||||||| || ||||| |||||||||| CAATTTTCTT CTCAACATTA ATTGTAGTAA TGTAAAGGTA TTCAACCTTT CCTTCATTAG 180 TCGTGTCAAC ATGATAGCCA TTTTGGCGAA TAACTTTGAA ACTTAATAAG TTTCTTTGAG 79971 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTCTCAAC ATGATAGCCA TTTTGGCGAA TAACTTTGAA ACTTAATAAG TTTCTTTGAG 240 ACTTACTACA ATATAATGCA TTATCAGTGC TTAATATTGT CTCTCCAG 79923 |||||||||| |||||||||| |||||| ||| |||||||||| | |||||| ACTTACTACA ATATAATGCA TTATCAATGC TTAATATTGT CCCTCCAG 288 hqPGS_C08SLm0119I05.1-_SGN-E332350- (80210 79923) ******************************************************************************** EST sequence 51 +strand 481 n (File: SGN-E208613+) 1 AAGAATGATC CTAATTGTCC TTGTATTTTT ATGAAAAGGT CTTGGTAAGA CAAAATTTTG 61 TCTTGACCTA CAGATTGTTA ATTTGACAAA TAAAATATTT GTCTAACAGT GCACATACAC 121 TGAAAAATTT TGATGCAATT TTATGTGGAT ATATCGCATT CATTGAGTAC CCCAATGATT 181 ATGAGATCAC TTGTCATAAA TGATGATTCA GTTTGATCTC AAAAGAAGGA TGATGAGTTT 241 CTTGGTGATG AAACTCTATC TTGGTGCAAT CAGGGCACTA GTGCATCTTG CTAACAATAC 301 TCGACCAGAT ATCTGTTTTG CAGTAAGTCT ACTGGCAAGA TTCAGTTCCT CCCCAACAAA 361 AAGACATTGG AATGGCGTTA AACACATACT TCGATATCTT CGAGGGACCA TGGACATGGG 421 TTTATTCTAT TCCAATGAAT CCAAATCAGA ACTGATTGGT TACGCAGATG CAGGGTATTT 481 A Predicted gene structure (within gDNA segment 79432 to 84101): Exon 1 82139 82176 ( 38 n); cDNA 1 38 ( 38 n); score: 0.737 Intron 1 82177 82292 ( 116 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.77) Exon 2 82293 82736 ( 444 n); cDNA 39 481 ( 443 n); score: 0.815 MATCH C08SLm0119I05.1+ SGN-E208613+ 0.815 482 1.002 C PGS_C08SLm0119I05.1+_SGN-E208613+ (82139 82176,82293 82736) Alignment (genomic DNA sequence = upper lines): AAAAATGACC CAATTTGTCG CTGCATTTTC ATTAAACGGT CGGGGTCTGA ATTTGTAATA 82198 || ||||| | | | ||||| || ||||| || ||| | AAGAATGATC CTAATTGTCC TTGTATTTTT ATGAAAAG.. .......... .......... 38 ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGACACTC ATAAAGATCT TTTAGAAGCC 82258 .......... .......... .......... .......... .......... .......... 38 GTTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGAC-AA ATTTTTTCTT 82317 ||| | | ||||| || ||||| |||| .......... .......... .......... ....GTCTTG GTAAGACAAA ATTTTGTCTT 64 GGCCTACAGA TTGAGAATTT GTCGAACGGA ATACTTGTTC ATCAATCAAC GTACACAAAA 82377 | |||||||| ||| ||||| | | || | ||| |||| | || | || ||||| || GACCTACAGA TTGTTAATTT GACAAATAAA ATATTTGTCT AACAGTGCAC ATACACTGAA 124 AAGATACTAA AG-TGTTTTA CATGGATAAC ACACATCCAT TGAGTACTCC AATGGTGGTA 82436 || || | | | ||||| |||||| | ||| ||| ||||||| || |||| | | AA-ATTTTGA TGCAATTTTA TGTGGATATA TCGCATTCAT TGAGTACCCC AATGATTATG 183 AGATCGCTTT ACATCAATAC ACATTCATTT AGACCTTAAG AGAATGATGA AGAGCTTCTT 82496 ||||| ||| ||| ||| ||||| || || || || |||| ||||| ||| ||||| AGATCACTTG TCATAAATGA TGATTCAGTT TGATCTCAAA AGAAGGATGA TGAGTTTCTT 243 GGTGATGAAA CTCCTTACCT TAGTGCGATT GGGGCACTAA TGTACCTTGC TAACAATACT 82556 |||||||||| || | || || | |||| || |||||||| || | ||||| |||||||||| GGTGATGAAA CT-C-TATCT TGGTGCAATC AGGGCACTAG TGCATCTTGC TAACAATACT 301 CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTAGAAAGAT TCAGTTCCTC CCCAACAAAA 82616 |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| |||||||||| CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC CCCAACAAAA 361 AGACATTGGA ATGGTGTTAA ACACATACTT CTATATCTTT GGGGGACCAT GGACATGGGT 82676 |||||||||| |||| ||||| |||||||||| | ||||||| | |||||||| |||||||||| AGACATTGGA ATGGCGTTAA ACACATACTT CGATATCTTC GAGGGACCAT GGACATGGGT 421 TTATTCTATT CCAATAATTC CAAGTCAGAA CTGATTGATT ACGCAGATGC AGGGTATTTA 82736 |||||||||| ||||| | || ||| |||||| ||||||| || |||||||||| |||||||||| TTATTCTATT CCAATGAATC CAAATCAGAA CTGATTGGTT ACGCAGATGC AGGGTATTTA 481 hqPGS_C08SLm0119I05.1+_SGN-E208613+ (82139 82176,82293 82736) ******************************************************************************** EST sequence 4 +strand 765 n (File: SGN-E211563+) 1 ATAACTCACA TCCATTGAGT ACTCCAATGG TGGTAAGATC GCTTGACATC AATACAGATC 61 CATTTCGACC TCAAGAGAAT GATGAAGAGC TTCTTGGTGA TGAAACTCCT TATCTTAGTG 121 CGATCGGGGC ACTAATGTAC CTTGCTAACA ATACTCGACC AGATATCTGT TTTGCAGTAA 181 GTCTACTGGC AAGATTCAGT TCCTCCCCAA CAAAAAGACA TTGGAATGGT GTTAAACACA 241 TACTTCGATA TCTTCGAGGG ACCATGGACA TGGGTTTATT CTATTCCAAT GAATCCAAAT 301 CAGAACTGAT TGGTTACGCA GATGCAGGGT ATTTATCAGA TCCGCATAAA GCCCGATCAC 361 AAACAGGCTA TTTGTTTACA TGTGGAGACA CGGCAATATC TTGGCGATCA ATGAAGCAAA 421 CGTTGGTAGC CACTTCTTCA AATCATGCAG AAATAATAGC CATCCATGAA GCAAGTCGAG 481 AGTGCGTCTG GTTGAGATCA ATGACCCATC ATATTCAGGA AATGTGTGGT TTTTCTTTGA 541 AAAAGAATAT ACCAACCATA ATGTACGAAG ATAATGCTGC ATGTATAGCT CAATTGAAAG 601 GAGGATACAT CAAAGGAGAC CGGACAAAGC ATATCTCACC AAAGTTCTTT TTCACGCATG 661 ATCTTCAACA AAATGGGTGA GATAGAAGTN CAACAAATTC GTTCAAGTGA TAATCTTGCT 721 GATTTATTCA CAAAGGCATT GCCAACATCA NCGTTTGAGA AGTTG Predicted gene structure (within gDNA segment 81423 to 89001): Exon 1 82402 82729 ( 328 n); cDNA 1 327 ( 327 n); score: 0.945 Intron 1 82730 83078 ( 349 n); Pd: 0.944 (s: 0.90), Pa: 0.726 (s: 0.90) Exon 2 83079 83313 ( 235 n); cDNA 328 562 ( 235 n); score: 0.940 Intron 2 83314 84764 (1451 n); Pd: 0.747 (s: 0.96), Pa: 0.952 (s: 0) Exon 3 84765 84778 ( 14 n); cDNA 563 575 ( 13 n); score: 0.714 Intron 3 84779 88233 (3455 n); Pd: 0.000 (s: 0), Pa: 0.754 (s: 0) Exon 4 88234 88239 ( 6 n); cDNA 576 581 ( 6 n); score: 0.667 MATCH C08SLm0119I05.1+ SGN-E211563+ 0.943 583 0.762 C PGS_C08SLm0119I05.1+_SGN-E211563+ (82402 82729,83079 83313,84765 84778,88234 88239) Alignment (genomic DNA sequence = upper lines): ATAACACACA TCCATTGAGT ACTCCAATGG TGGTAAGATC GCTTTACATC AATACACATT 82461 ||||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||| || ATAACTCACA TCCATTGAGT ACTCCAATGG TGGTAAGATC GCTTGACATC AATACAGATC 60 CATTTAGACC TTAAGAGAAT GATGAAGAGC TTCTTGGTGA TGAAACTCCT TACCTTAGTG 82521 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| || ||||||| CATTTCGACC TCAAGAGAAT GATGAAGAGC TTCTTGGTGA TGAAACTCCT TATCTTAGTG 120 CGATTGGGGC ACTAATGTAC CTTGCTAACA ATACTCGACC AGATATCTGT TTTGCAGTAA 82581 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCGGGGC ACTAATGTAC CTTGCTAACA ATACTCGACC AGATATCTGT TTTGCAGTAA 180 GTCTACTAGA AAGATTCAGT TCCTCCCCAA CAAAAAGACA TTGGAATGGT GTTAAACACA 82641 ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTACTGGC AAGATTCAGT TCCTCCCCAA CAAAAAGACA TTGGAATGGT GTTAAACACA 240 TACTTCTATA TCTTTGGGGG ACCATGGACA TGGGTTTATT CTATTCCAAT AATTCCAAGT 82701 |||||| ||| |||| | ||| |||||||||| |||||||||| |||||||||| | ||||| | TACTTCGATA TCTTCGAGGG ACCATGGACA TGGGTTTATT CTATTCCAAT GAATCCAAAT 300 CAGAACTGAT TGATTACGCA GATGCAGGGT ATTTATCTGA TCCGCATAAA ACTTGATCAC 82761 |||||||||| || ||||||| |||||| | CAGAACTGAT TGGTTACGCA GATGCA-G.. .......... .......... .......... 327 AAATAGGCTA TTTGTTTACA TGTGAAGACA CGACAATATC TTGGAAATCA ATGAAACAAA 82821 .......... .......... .......... .......... .......... .......... 327 CGTTGGTATC AATGAAGAGC TTCTTGGTGA TGAAACTCCT TACCTTAGTG CGATTGGGGC 82881 .......... .......... .......... .......... .......... .......... 327 ACTAATGTAC CTTGCTAACA ATACTCGACC AGATATCTGT TTTGCAGTAA GTCTACTAGA 82941 .......... .......... .......... .......... .......... .......... 327 AAGATTCAGT TCCTCCCCAA CAAAAAGACA TTGGAATGGT GTTAAACACA TACTTCTATA 83001 .......... .......... .......... .......... .......... .......... 327 TCTTCGGGGG ACCATGGACA TGGGTTTATT CTATTCCAAT AATTCCAAGT CAGAACTGAT 83061 .......... .......... .......... .......... .......... .......... 327 TGATTACGCA TATGCAGGGT ATTTATCTGA TCCGCATAAA ACTTGATCAC AAATAGGCTA 83121 ||| ||||||| || |||||||||| | |||||| ||| |||||| .......... .......GGT ATTTATCAGA TCCGCATAAA GCCCGATCAC AAACAGGCTA 370 TTTGTTTACA TGTGGAGACA CGACAATATC TTGGAAATCA ATGAAACAAA CGTTGGTAGC 83181 |||||||||| |||||||||| || ||||||| |||| |||| ||||| |||| |||||||||| TTTGTTTACA TGTGGAGACA CGGCAATATC TTGGCGATCA ATGAAGCAAA CGTTGGTAGC 430 CACTTCTTCA AATCATGCAG AAATTAAAGT CATCCATGAA GCAAGTCGAG AGTGCGTCTG 83241 |||||||||| |||||||||| |||| | || |||||||||| |||||||||| |||||||||| CACTTCTTCA AATCATGCAG AAATAATAGC CATCCATGAA GCAAGTCGAG AGTGCGTCTG 490 GTTGAGATCA ATGACCCATC ATATTCAGGA AATGTGTGGT TTTTCTTTGA AAAAGAATAT 83301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAGATCA ATGACCCATC ATATTCAGGA AATGTGTGGT TTTTCTTTGA AAAAGAATAT 550 ATCAACCACA ATGTAAGAAT TAAGGATTAA TACGAGTATT TTATCATAAT ACTAATATTA 83361 | |||||| | || ACCAACCATA AT........ .......... .......... .......... .......... 562 ATTGATGTAT AATCTGATTA GGTCTTGAGA AATGTTTTGC TGAATAAGTA ATTAATATTA 83421 .......... .......... .......... .......... .......... .......... 562 ATAATAGAAT AAAATATATA TTTTTTCGAG TCTTGAGCAA GTAAATCTTC TTTTGGTTGA 83481 .......... .......... .......... .......... .......... .......... 562 GCTTAAACCT ATCTTGCTTA CTTGAGCTTA GACCTATCTT ACTTACTTAG ATAAAGAAAC 83541 .......... .......... .......... .......... .......... .......... 562 GGATTGCTAG TCTTGACAGC TCGAAAGTGC CTTAATTAGA CGGAAGTCTT CAAATTTTCT 83601 .......... .......... .......... .......... .......... .......... 562 CAGATTACTA TTGCTATGTT AAAAGTGAAA AATTATTTTT AGAATAGTAG ACGATTAAAA 83661 .......... .......... .......... .......... .......... .......... 562 ATGAACAAAG AATGTATATG GTGACGTTAA ATTTTACGAA GCCAAATCAA TTTTAAAGTT 83721 .......... .......... .......... .......... .......... .......... 562 ATTTTTAACC TCATCCTTTG ATTTTTTTTG ACCCTCTTCA TTTTTCTCCT TTTTTTATAT 83781 .......... .......... .......... .......... .......... .......... 562 ATATATATAT TTCATTTTTA AAAAAAAAAT ATAATACATT GTATATACAT TATCTATATT 83841 .......... .......... .......... .......... .......... .......... 562 GTATATGTAT ATATAATGTA TATACTTCGT ATAATCATGT ATAAATATAT GAAACCAACT 83901 .......... .......... .......... .......... .......... .......... 562 CAAATTACAT ACCTTTAACC ACAATTTGAT CTGAAAGCTC GAGTTTGTCA ACTAAAAATC 83961 .......... .......... .......... .......... .......... .......... 562 GAGAGGTTGA AAAAAGATAA ATAATGCAAG TGACCTATCT TACAAATTAA AGTTATTTAC 84021 .......... .......... .......... .......... .......... .......... 562 TTAATTTGAT GCACTTTCCA TTCTTTTGGT GATACTCAAC TTTCGTTTTT AATTCAAAAG 84081 .......... .......... .......... .......... .......... .......... 562 TCATTTAATT ACGATTTTTT TTCACAAAAA GTCATTCAAC ATATTAATTA TTTTTTTATT 84141 .......... .......... .......... .......... .......... .......... 562 AAAATTTACT GACATGAAAT TTTAATTTTT AACCAAAATT TTAAAAACCA AAAATATATT 84201 .......... .......... .......... .......... .......... .......... 562 CATTTAAACC ATTTAACGAC TCGTCCCACT TAAAATATAA TATTAAACTT TTTATTTTAC 84261 .......... .......... .......... .......... .......... .......... 562 CATTAGTTTC CTAAATCATC CTCCCTCGTC TCCCCATTCT TTCCCTCTAC TTCTTCTCTT 84321 .......... .......... .......... .......... .......... .......... 562 TTCTTTCCCT TGTTAATTTC TCAATTTCAA CCTCTTATTC ACATTATATA CAATTTTGGA 84381 .......... .......... .......... .......... .......... .......... 562 CAAACAAGGG TTAGCCGGAT GACTAAGGAT ATAAAATCTG AAATATTAAT TTATTTGTAT 84441 .......... .......... .......... .......... .......... .......... 562 TCGATATTTA TATTAATTTT GATAGGTAAA AATTAAAGTG AGAATAGAAA TTAAAGTGAA 84501 .......... .......... .......... .......... .......... .......... 562 AATACAAATT ACTTAATCAT GCGTAGTGAT AAGAACATAT ATAAAAGATA AATGACTTCA 84561 .......... .......... .......... .......... .......... .......... 562 ATATGTTGAT CAAATTGCGA TTAATTTTCT TTTTTCCGCG TGAAAAATTT CTTTCGATCA 84621 .......... .......... .......... .......... .......... .......... 562 CTATTATGTC CTTTCATGTT TAGCTAAAGT TTCCAACTTA GAGTATATTT TCAAAAACTG 84681 .......... .......... .......... .......... .......... .......... 562 TATCGGGTTT GACCAATAAT GTGTAACACT AAATATTTTT CATTGCACTA TGATTAGGAC 84741 .......... .......... .......... .......... .......... .......... 562 TTTATGTCAT CACTAATTGA TAGGCTATTA AGAAAATATC ACTTGTCTTC CCACCACAAG 84801 | || | ||| ||| .......... .......... ...G-TACGA AGATAAT... .......... .......... 575 ATGCAAATTG AAGAAAGAGC TTCTATTAAG AAAATTAGAC ATAGTTAATT AAATAAAGTT 84861 .......... .......... .......... .......... .......... .......... 575 TCTGATAGAA TATATACCTT CACTTAACAA GTAATGGACC AGGCCCCTTA CTACACTAAT 84921 .......... .......... .......... .......... .......... .......... 575 GAATAAAAAG AAAGTTAAAT GCAGTAAAAT CAACACGATG ATTTTACGTG AAAACCTCCT 84981 .......... .......... .......... .......... .......... .......... 575 TGCTTAAGGG AGTAAAACCA CGACCTGTCT CACAGGATTT TCAATCGTTT TCACTAATCT 85041 .......... .......... .......... .......... .......... .......... 575 TCAAAAGCAA AAGTAAAACA CGATTACACC AAACGTAAGA AAGAGTTATC AATCTTACAG 85101 .......... .......... .......... .......... .......... .......... 575 TTAAGAAATA GTCCACTATT GCTTAACAAG CCTAAGTAGA AAACAATCTA CCCACTAAGC 85161 .......... .......... .......... .......... .......... .......... 575 TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC AATTCCTTTG TAGATTCAGG 85221 .......... .......... .......... .......... .......... .......... 575 AATGGTTTAC AGTTTAAGAA CAAGAGAATG CATTCCTAAA CAACTAGACA AAAAGCTCCA 85281 .......... .......... .......... .......... .......... .......... 575 GATATTGCTG TTGTTCTTGG AATAATTCCG CCTTTGCTTT GTAGTAGCCT TTGCAAGAGT 85341 .......... .......... .......... .......... .......... .......... 575 TCTTGAAAAT TTTTTATCAA GTTGCAAAAG TTGCACAAAA TGTTTAGAAA AGTGCCTTTT 85401 .......... .......... .......... .......... .......... .......... 575 ATATGGGCAA GTCACTTTCC TAAACCTCTT TGCCATTGGC TGGAAAAGTC ACACTTTCTG 85461 .......... .......... .......... .......... .......... .......... 575 ACGCCATCGG GAAGTGTGCA CCTACTTTCT GTACCGTCTC CAGCTGGCAA TCAACTGGCT 85521 .......... .......... .......... .......... .......... .......... 575 CCTCATCATG AGAGCCTGGT ACCTCTACTA GGTCCCTGGG TTTGTTTCAT CTACAATACT 85581 .......... .......... .......... .......... .......... .......... 575 CAAGCAAGAA CCCTGCAATA GTCAATTAAG AAACTGGTAC CTTTACAAGG TTCCCAAGTT 85641 .......... .......... .......... .......... .......... .......... 575 TGTCTAATCA TCAATACTAC AAATAACATT TTCCCCCTTT TTGATGATGA CAAACACTGA 85701 .......... .......... .......... .......... .......... .......... 575 AGTCATAATC TAAGATCCTC TCCAACTTTG TTCACCCTTT TTATATTCCC CCTCACTGTA 85761 .......... .......... .......... .......... .......... .......... 575 TGTTCCCCCT CACTAAAATA TCATTTAGCT ACGCACTACA CAGTTTTACT TCCCCCTTTT 85821 .......... .......... .......... .......... .......... .......... 575 GGCATCATAA AAAAGAAACG CAGTAAACCA GAGATGTGAG CAGAAACACT GAAAAAGATC 85881 .......... .......... .......... .......... .......... .......... 575 AAGGCTAAAA AGCAACTAAT CAGTAAAGAA AAAGCATGCA CAAGAGGAGA TAATTAGAAC 85941 .......... .......... .......... .......... .......... .......... 575 AGCACAGGAA TGAATTAACC AGTACGCCAT AATAACATAA ATACATTAGA ACCAAACTGA 86001 .......... .......... .......... .......... .......... .......... 575 ACATTCTTCA ACACATTGAA AAGCCACAAA AAAAATTTGA CACAAGGGGG GTTCAACAAA 86061 .......... .......... .......... .......... .......... .......... 575 CTCGGAAGAG GGAGGAGGAT GAGACAGGGA TTGGATAACA AGAGTGAGTC GTGCATTGAC 86121 .......... .......... .......... .......... .......... .......... 575 AGCATCATTG TCTTTGATGG CCTTTTCTTG CAGGGCAGTT ATCTTCGCCT TCAACTTAGT 86181 .......... .......... .......... .......... .......... .......... 575 ATTCTCTTTC TCCAGAGCTT GAACCACTGA AGAACCAGGT CCCTCACTTT GTGCAGTAAG 86241 .......... .......... .......... .......... .......... .......... 575 CAGTTCTGCT TTGAGTATAG CAATCTCTGC CTCTTTACCA CTTAACTGCA CAGTAAGCTC 86301 .......... .......... .......... .......... .......... .......... 575 CTCAACCTCA TTCTTAAGCT GCTCCTGATC ATCAATCAGT TGGGCCATTT TGCTCTTTGG 86361 .......... .......... .......... .......... .......... .......... 575 ATAGCCTCTT CCTTCAATGC ATTCACACTC AACCAAGGTA ATTTCGGAGA TAGTCTGCTT 86421 .......... .......... .......... .......... .......... .......... 575 AACTGTCCCC ATTTTTCCCA CACTAAGAGG AATTTGAAAA TTCTTGAATA CCTCCGTAAG 86481 .......... .......... .......... .......... .......... .......... 575 AAAGTATCCA TAACCCATTC CGTGAACACC TTTCCTCTCA ATGACAGTTT TGTGGATATG 86541 .......... .......... .......... .......... .......... .......... 575 CTCATGCATT AGACCAGGTA GGTTCAAGGC GTCGAAGTTG CACAACATCT CCATCACAAA 86601 .......... .......... .......... .......... .......... .......... 575 CAAATCAGCA GCAGTTTCTA CTGTCCTCTT TTCAGTGCGA GGAAGGAGAA CTTTGTTGAT 86661 .......... .......... .......... .......... .......... .......... 575 GAACTCAAAA ACCAACTGAT ACTCACTCTT CATGATTTTC TTATAAATCC CAGCAACCTT 86721 .......... .......... .......... .......... .......... .......... 575 GGTTGTGGGT GTCTTAGAAA TCACAGCAGC AAACTCAGAA GAGCAAGTTC TACCCAATAC 86781 .......... .......... .......... .......... .......... .......... 575 AGACCCGGTG CCCTCTCTAG GCACCCTGAG AATTTTGCTC AACACACCCT CATCTAAACA 86841 .......... .......... .......... .......... .......... .......... 575 TATAGCAATA TTATTTACTC GTGTGAGGAT GCTCCCATCA TCCTTGAATT GAATATTATA 86901 .......... .......... .......... .......... .......... .......... 575 GTAAAATTCA CGCACTTCTT CTTCATGGAG AATGAGGGAT TTCCTGTTGA ACAAATGTAA 86961 .......... .......... .......... .......... .......... .......... 575 CCAAGATTGG ATCTCAACCA TGTCGTGAAG ACAGTCCATG CCAGGAAGAG TTATGATCCC 87021 .......... .......... .......... .......... .......... .......... 575 CATATCAAAA ATTCTTCCTG CCAAAACAGC TTGGTTTCTC AGACTGTCAA CCACCTCCTG 87081 .......... .......... .......... .......... .......... .......... 575 CATGTTGACA CCCTCAACTT TCCTGGCTTG GGAACCAGGT CCCTGTGACC GCTTTCTCTT 87141 .......... .......... .......... .......... .......... .......... 575 TTTCTCAGAT CTCTTCCCTT TTGACTGTGA CTTTTCAACC TTCCTTGTAA CCCTTTCCCT 87201 .......... .......... .......... .......... .......... .......... 575 TTTCTTTTAT GACTTCTTCT TCTTATTTTT CTTGTCCACC TCTTCTTCAG ACAACTCCAC 87261 .......... .......... .......... .......... .......... .......... 575 CACATTAGCT TCAGGTAATT TAAAATTTGA TACATTGAAG GTTCTTGCAC TTCTAACTGC 87321 .......... .......... .......... .......... .......... .......... 575 AGCAGTAGAA CGTGCACTTG CCTTCAAGGC ATCAACCATC AACTTTTGTG CAGCAGACCT 87381 .......... .......... .......... .......... .......... .......... 575 TTTAGTAGGT CGTCTCCTAG GGGCCTCCTC CACAACCTTT TCCTTCCCTT TTCTAGATCC 87441 .......... .......... .......... .......... .......... .......... 575 CACCCGTTCT CTTCTATCAA CCTTCCATTT TAATGGCTCC TCCTCACTAG CAGAGTCAGA 87501 .......... .......... .......... .......... .......... .......... 575 GGAAGAGGAA GAAGAGTACC TACCTAAATC AGGGGTTTTA TCAAAGATAG GTTGAGTAGG 87561 .......... .......... .......... .......... .......... .......... 575 TCTTACCTCT TCCCTTTCCA AGACTTCAGT ATGCTCTGCC CTTGCTTCTT CTCGCATCAT 87621 .......... .......... .......... .......... .......... .......... 575 GGCCAGGCTT TCAACCACGA GTTCTTCACT CGCTGCCAGT ATGTTGGACT TGGAAGCCCT 87681 .......... .......... .......... .......... .......... .......... 575 ATGTTTTGGT AGATACCCTT CAAACATATT GTCAGGCAAC ATGTCTTGAA AAGGACCAGG 87741 .......... .......... .......... .......... .......... .......... 575 TCCAGTAGGC ACTGCAGAAG TATTTAGATC TATGGCAAAA AAAGGGTTAT CAGGAGTGTC 87801 .......... .......... .......... .......... .......... .......... 575 TTGGTGAGGA CTGGGAGAAA GAGGAGGTCT GGCTTGTGTA TTGGTTAGAG AATAGAAAGC 87861 .......... .......... .......... .......... .......... .......... 575 AAGAGGCTCG ATTTCACTGA GAGCATTCAA CATTTGTTTG GAAGAGGATG AAGCAGAAGA 87921 .......... .......... .......... .......... .......... .......... 575 CATGGTTTTC ACACTAGGAA GTATTTTGCT TGAATCAGCG AAGAGAAGAA AAAGAAGACG 87981 .......... .......... .......... .......... .......... .......... 575 AAATTTGCCT TTCAAGTTTT TGCAAAAACC CTTCGTGAAC AGTAAGAAGA AATTAAGAGA 88041 .......... .......... .......... .......... .......... .......... 575 CAGATGAGAG TTTCAAGAAG AAGTAATGAT ATTTAAAGAA AGTAAAAAGG TGCCAGGTCC 88101 .......... .......... .......... .......... .......... .......... 575 GTGATTGGAT GCGTCATTTG AGAAAGAAAC GATGGGACTG ATCAGTCAGA ATAACCGATG 88161 .......... .......... .......... .......... .......... .......... 575 GCTGACACGT GGCATTATCA ACGGTCATAT TATTTCAGTT TCAATTTAAT GTATAAATGC 88221 .......... .......... .......... .......... .......... .......... 575 TAACCTGGAC AGGCACCA 88239 || || .......... ..GCTGCA 581 hqPGS_C08SLm0119I05.1+_SGN-E211563+ (82402 82729,83079 83313) ******************************************************************************** EST sequence 12 +strand 571 n (File: SGN-E201786+) 1 TGGTGGTAAG ATCGCTTGAC ATCAATACAG ATCCATTTCG ACCTCAAGAG AATGATGAAG 61 AGCTTCTTGG TGATGAAACT CCTTATCTTA GTGCGATCGG GGCACTAATG TACCTTGCTA 121 ACAATACTCG ACCAGATATC TGTTTTGCAG TAAGTCTACT GGCAAGATTC AGTTCCTCCC 181 CAACAAAAAG ACATTGGAAT GGTGTTAAAC ACATACTTCG ATATCTTCGA GGGACCATGG 241 ACATGGGTTT ATTCTATTCC AATGAATCCA AATCAGAACT GATTGGTTAC GCAGATGCAG 301 GGTATTTATC AGATCCGCAT AAAGCCCGAT CACAAACAGG CTATTTGTTT ACATGTGGAG 361 ACACGGCAAT ATCTTGGCGA TCAATGAAGC AAACGTTGGT AGCCACTTCT TCAAATCATG 421 CAGAAATAAT AGCCATCCAT GAAGCAAGTC GAGAGTGCGT CTGGTTGAGA TCAATGACCC 481 ATCATATTCA GGAAATGTGT GGTTTTTCTT TGAAAAAGAA TATACCACCC TTATTGTCCG 541 AAGATAATGC TGCATGTATA GCTCAATTGA A Predicted gene structure (within gDNA segment 81693 to 86731): Exon 1 82429 82729 ( 301 n); cDNA 1 300 ( 300 n); score: 0.944 Intron 1 82730 83078 ( 349 n); Pd: 0.944 (s: 0.90), Pa: 0.726 (s: 0.90) Exon 2 83079 83308 ( 230 n); cDNA 301 530 ( 230 n); score: 0.939 MATCH C08SLm0119I05.1+ SGN-E201786+ 0.942 531 0.930 C PGS_C08SLm0119I05.1+_SGN-E201786+ (82429 82729,83079 83308) Alignment (genomic DNA sequence = upper lines): TGGTGGTAAG ATCGCTTTAC ATCAATACAC ATTCATTTAG ACCTTAAGAG AATGATGAAG 82488 |||||||||| ||||||| || ||||||||| || ||||| | |||| ||||| |||||||||| TGGTGGTAAG ATCGCTTGAC ATCAATACAG ATCCATTTCG ACCTCAAGAG AATGATGAAG 60 AGCTTCTTGG TGATGAAACT CCTTACCTTA GTGCGATTGG GGCACTAATG TACCTTGCTA 82548 |||||||||| |||||||||| ||||| |||| ||||||| || |||||||||| |||||||||| AGCTTCTTGG TGATGAAACT CCTTATCTTA GTGCGATCGG GGCACTAATG TACCTTGCTA 120 ACAATACTCG ACCAGATATC TGTTTTGCAG TAAGTCTACT AGAAAGATTC AGTTCCTCCC 82608 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| |||||||||| ACAATACTCG ACCAGATATC TGTTTTGCAG TAAGTCTACT GGCAAGATTC AGTTCCTCCC 180 CAACAAAAAG ACATTGGAAT GGTGTTAAAC ACATACTTCT ATATCTTTGG GGGACCATGG 82668 |||||||||| |||||||||| |||||||||| ||||||||| ||||||| | |||||||||| CAACAAAAAG ACATTGGAAT GGTGTTAAAC ACATACTTCG ATATCTTCGA GGGACCATGG 240 ACATGGGTTT ATTCTATTCC AATAATTCCA AGTCAGAACT GATTGATTAC GCAGATGCAG 82728 |||||||||| |||||||||| ||| | |||| | |||||||| ||||| |||| ||||||||| ACATGGGTTT ATTCTATTCC AATGAATCCA AATCAGAACT GATTGGTTAC GCAGATGCA- 299 GGTATTTATC TGATCCGCAT AAAACTTGAT CACAAATAGG CTATTTGTTT ACATGTGAAG 82788 | G......... .......... .......... .......... .......... .......... 300 ACACGACAAT ATCTTGGAAA TCAATGAAAC AAACGTTGGT ATCAATGAAG AGCTTCTTGG 82848 .......... .......... .......... .......... .......... .......... 300 TGATGAAACT CCTTACCTTA GTGCGATTGG GGCACTAATG TACCTTGCTA ACAATACTCG 82908 .......... .......... .......... .......... .......... .......... 300 ACCAGATATC TGTTTTGCAG TAAGTCTACT AGAAAGATTC AGTTCCTCCC CAACAAAAAG 82968 .......... .......... .......... .......... .......... .......... 300 ACATTGGAAT GGTGTTAAAC ACATACTTCT ATATCTTCGG GGGACCATGG ACATGGGTTT 83028 .......... .......... .......... .......... .......... .......... 300 ATTCTATTCC AATAATTCCA AGTCAGAACT GATTGATTAC GCATATGCAG GGTATTTATC 83088 |||||||||| .......... .......... .......... .......... .......... GGTATTTATC 310 TGATCCGCAT AAAACTTGAT CACAAATAGG CTATTTGTTT ACATGTGGAG ACACGACAAT 83148 ||||||||| ||| | ||| |||||| ||| |||||||||| |||||||||| ||||| |||| AGATCCGCAT AAAGCCCGAT CACAAACAGG CTATTTGTTT ACATGTGGAG ACACGGCAAT 370 ATCTTGGAAA TCAATGAAAC AAACGTTGGT AGCCACTTCT TCAAATCATG CAGAAATTAA 83208 ||||||| | |||||||| | |||||||||| |||||||||| |||||||||| ||||||| | ATCTTGGCGA TCAATGAAGC AAACGTTGGT AGCCACTTCT TCAAATCATG CAGAAATAAT 430 AGTCATCCAT GAAGCAAGTC GAGAGTGCGT CTGGTTGAGA TCAATGACCC ATCATATTCA 83268 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCATCCAT GAAGCAAGTC GAGAGTGCGT CTGGTTGAGA TCAATGACCC ATCATATTCA 490 GGAAATGTGT GGTTTTTCTT TGAAAAAGAA TATATCAACC 83308 |||||||||| |||||||||| |||||||||| |||| || || GGAAATGTGT GGTTTTTCTT TGAAAAAGAA TATACCACCC 530 hqPGS_C08SLm0119I05.1+_SGN-E201786+ (82429 82729,83079 83308) ******************************************************************************** EST sequence 36 +strand 711 n (File: SGN-E331947+) 1 AAATAATGCA ACAATATGAA GATTTTGAGC CAAAATCTGT TCACGAATGT AGACAGAGAA 61 ATGATTGGCC AAAATGGAAG GATGCAATTC AAGCTGAATT GGCTTCACTA GAAATACGTG 121 AAGTTTTTGG ACCGATAATC CGAACACCTG AAGGTATCAA GCCAGTGGGG TACAAATGGG 181 TTTTTGTACG GAAAAGAAAT GAGAAAGATG AAGTCATGAG ATATAAGGCC CGACTCGTTG 241 CTCAAGGTTT TTCTCAAAGA CCTGGCATTG ATTATATGGA GACATATTCT CCAGTGGTAG 301 ATGCAATCAC CTTCAGATAT CTCATAAATT TGGCAGTTCA TGAAAAACTT GAAATGCGTC 361 TAATGGACGT TGTCACAGCC TATCTATATG GCTCATTGGA CCACAACATT TTCATGAAAA 421 TTCCTGAAGC ATTCAAAGTT CCTGAAGCAT ACAAAGATTC AAGAGAAACT TGTTCAATAA 481 AACTTCAGAA ATCTCTGTAT GGATTGAAAC AATCAGGAAG GATGTGGTAC AATCGTCTGA 541 GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACCCGAT TTGTCCCTGC ATTTTTATTA 601 AACGGTCGGG GTCTGAATTT GTAATAATAG CTGTGTATGT TGATGATTTG AACATCATTG 661 GCACTGGTAA AGAGCTTTTA GAAGCTATTG AGTGTCTGAA AAAAGAATTT G Predicted gene structure (within gDNA segment 80842 to 83352): Exon 1 81577 82283 ( 707 n); cDNA 1 711 ( 711 n); score: 0.936 MATCH C08SLm0119I05.1+ SGN-E331947+ 0.936 707 0.994 C PGS_C08SLm0119I05.1+_SGN-E331947+ (81577 82283) Alignment (genomic DNA sequence = upper lines): AAATAATGCA ACAAGATGAA GATTTTGAGC CAAAATCTGT TCACGAATGT AGACAGAGAA 81636 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATGCA ACAATATGAA GATTTTGAGC CAAAATCTGT TCACGAATGT AGACAGAGAA 60 ATGATTGGCC AAAATGGAAG GATACAATTC AAGCTGAATT ATCTTCACTA GAAAAAAGTG 81696 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||| |||| | ||| ATGATTGGCC AAAATGGAAG GATGCAATTC AAGCTGAATT GGCTTCACTA GAAATACGTG 120 AAGTTTTTGG ACCAATAATC CGAACACCTG GAGGTATCAA GCCAGTGGAG TACAAATGGG 81756 |||||||||| ||| |||||| |||||||||| ||||||||| |||||||| | |||||||||| AAGTTTTTGG ACCGATAATC CGAACACCTG AAGGTATCAA GCCAGTGGGG TACAAATGGG 180 TTTTTGTACA AAAAAGAAAT GAGAAAGGTA AAGTCATGAG ATATAAGG-- C--CTCGTTG 81812 ||||||||| ||||||||| ||||||| | |||||||||| |||||||| | ||||||| TTTTTGTACG GAAAAGAAAT GAGAAAGATG AAGTCATGAG ATATAAGGCC CGACTCGTTG 240 CTCAAAGTTT TTCTCAAAGA CCTGGCATTG ATTATATGGA GACATATTCT CCAGTGGTAG 81872 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGGTTT TTCTCAAAGA CCTGGCATTG ATTATATGGA GACATATTCT CCAGTGGTAG 300 ATGCAATCAC CTTCAGATAT CTCATAAATC TTGCAGTTCA TGAAAAACAT AAAATGCATC 81932 |||||||||| |||||||||| ||||||||| | |||||||| |||||||| | |||||| || ATGCAATCAC CTTCAGATAT CTCATAAATT TGGCAGTTCA TGAAAAACTT GAAATGCGTC 360 TAATGGACGT TGTCACAGCC TATCTATATG GCTCATTGGA CCACAACATT TTCATGAAAA 81992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGGACGT TGTCACAGCC TATCTATATG GCTCATTGGA CCACAACATT TTCATGAAAA 420 TTCCTGAAGT ATTCAAAGTA CCTGAAGCAT ACAAAGATTC AAGAGAAACT TGTTCAATAA 82052 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTGAAGC ATTCAAAGTT CCTGAAGCAT ACAAAGATTC AAGAGAAACT TGTTCAATAA 480 AGATTCAGAA ATCTCCGTAT GGATTGAAAG AATCAGGAAG GATGTGGTAC AATCGTTTGA 82112 | ||||||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||| ||| AACTTCAGAA ATCTCTGTAT GGATTGAAAC AATCAGGAAG GATGTGGTAC AATCGTCTGA 540 GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACCCAAT TTGTCGCTGC ATTTTCATTA 82172 |||||||||| |||||||||| |||||||||| ||||||| || ||||| |||| ||||| |||| GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACCCGAT TTGTCCCTGC ATTTTTATTA 600 AACGGTCGGG GTCTGAATTT GTAATAATAG CTGTGTATGT TGATGATTTG AACATCATTG 82232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGGTCGGG GTCTGAATTT GTAATAATAG CTGTGTATGT TGATGATTTG AACATCATTG 660 ACACTCATAA AGATCTTTTA GAAGCCGTTG AGTGTCTGAA AAAAGAATTT G 82283 |||| ||| ||| |||||| ||||| ||| |||||||||| |||||||||| | GCACTGGTAA AGAGCTTTTA GAAGCTATTG AGTGTCTGAA AAAAGAATTT G 711 hqPGS_C08SLm0119I05.1+_SGN-E331947+ (81577 82283) ******************************************************************************** EST sequence 21 +strand 690 n (File: SGN-E353811+) 1 GAGAGAGAAC TAGTTCGATA AAGCTTTAAA AATCTTTGTA TGAATTGAAA CAGTCACGGA 61 GGCTTGGTAC AATCGTCTAA GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACACGAT 121 TTGTCCCTAC ATTTTTTATT ACACAATTGG AGTCTGAATT TGTTATAGTA GTTGTGTATG 181 TTGATAATTT GAACATCATC GACACTCGTA AAGATTTTTT AGAAGTCGTT GAGTGCCTGA 241 AAAGAGAATT TAAAATGAAA GATCTCGGCA AGATAAAATT TTATCTTAAC CTACAAATTA 301 AGAATTTGTC AAATGAAATA CTTGTTCATC AATCAACATA CATTGAAAAG ATATAAAAAT 361 GATATTACAT TGATAACTCA CATTCATTGA ATACCCCAAT GGTGGTAAGA TTACTTGACA 421 TCAATACAAG TTCATTTCGA CCTCAAGAGA AGGATGAAAA GCTTCTTGGT GATGAAACTC 481 CTTACCTTAG TGCAGTAAGG GTACTAATGT ACCTTGCTAA TAATACTCGA CCAAATATCT 541 ATTTTGCAGT AAGTCTACTG GCAATATTCA GTTCCTCCCC AACAAAAAGA CATGAAAATA 601 GTGTTAAACA CATACTTCGA TATCTTCGGA GACCATGAAA TAGGGTATAT TCCAACGAAT 661 CCCAGTCATG ACTAATTGAT TACACAAATA Predicted gene structure (within gDNA segment 77649 to 85209): Exon 1 82034 82724 ( 691 n); cDNA 2 689 ( 688 n); score: 0.835 MATCH C08SLm0119I05.1+ SGN-E353811+ 0.835 691 1.001 C PGS_C08SLm0119I05.1+_SGN-E353811+ (82034 82724) Alignment (genomic DNA sequence = upper lines): AGAGA-AACT TGTTCAATAA AGATTCAGAA ATCTCCGTAT GGATTGAAAG AATCAGGAAG 82092 ||||| |||| |||| |||| || || | || |||| |||| | ||||||| | ||| | || AGAGAGAACT AGTTCGATAA AGCTTTAAAA ATCTTTGTAT GAATTGAAAC AGTCACGGAG 61 GATGTGGTAC AATCGTTTGA GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACCCAAT 82152 | | |||||| |||||| | | |||||||||| |||||||||| |||||||||| ||||| | || GCT-TGGTAC AATCGTCTAA GTGAATATTT GTTAAAGAAA GGGTACAAAA ATGACACGAT 120 TTGTCGCTGC A-TTTTCATT AAACGGTCGG GGTCTGAATT TGTAATAATA GCTGTGTATG 82211 ||||| || | | |||| ||| | || | || ||||||||| ||| ||| || | |||||||| TTGTCCCTAC ATTTTTTATT ACACAATTGG AGTCTGAATT TGTTATAGTA GTTGTGTATG 180 TTGATGATTT GAACATCATT GACACTCATA AAGATCTTTT AGAAGCCGTT GAGTGTCTGA 82271 ||||| |||| ||||||||| ||||||| || ||||| |||| ||||| |||| ||||| |||| TTGATAATTT GAACATCATC GACACTCGTA AAGATTTTTT AGAAGTCGTT GAGTGCCTGA 240 AAAAAGAATT TGAAATGAAA GATCTCGGCA AGA-CAAATT TTTTCTTGGC CTACAGATTG 82330 ||| |||||| | |||||||| |||||||||| ||| ||||| || |||| | ||||| ||| AAAGAGAATT TAAAATGAAA GATCTCGGCA AGATAAAATT TTATCTTAAC CTACAAATTA 300 AGAATTTGTC GAACGGAATA CTTGTTCATC AATCAACGTA CACAAAAAAG ATACTAAAGT 82390 |||||||||| || | |||| |||||||||| ||||||| || || ||||| ||| ||| | AGAATTTGTC AAATGAAATA CTTGTTCATC AATCAACATA CATTGAAAAG ATATAAAAAT 360 G-TTTTACAT GGATAACACA CATCCATTGA GTACTCCAAT GGTGGTAAGA TCGCTTTACA 82449 | | |||||| |||||| || ||| |||||| ||| ||||| |||||||||| | ||| ||| GATATTACAT TGATAACTCA CATTCATTGA ATACCCCAAT GGTGGTAAGA TTACTTGACA 420 TCAATACACA TTCATTTAGA CCTTAAGAGA ATGATGAAGA GCTTCTTGGT GATGAAACTC 82509 |||||||| ||||||| || ||| |||||| | |||||| | |||||||||| |||||||||| TCAATACAAG TTCATTTCGA CCTCAAGAGA AGGATGAAAA GCTTCTTGGT GATGAAACTC 480 CTTACCTTAG TGCGATTGGG GCACTAATGT ACCTTGCTAA CAATACTCGA CCAGATATCT 82569 |||||||||| ||| | || | |||||||| |||||||||| ||||||||| ||| |||||| CTTACCTTAG TGCAGTAAGG GTACTAATGT ACCTTGCTAA TAATACTCGA CCAAATATCT 540 GTTTTGCAGT AAGTCTACTA GAAAGATTCA GTTCCTCCCC AACAAAAAGA CATTGGAATG 82629 ||||||||| ||||||||| | || ||||| |||||||||| |||||||||| ||| ||| ATTTTGCAGT AAGTCTACTG GCAATATTCA GTTCCTCCCC AACAAAAAGA CATGAAAATA 600 GTGTTAAACA CATACTTCTA TATCTTTGGG GGACCATGGA CATGGGTTTA TTCTATTCCA 82689 |||||||||| |||||||| | |||| || || |||||| || || || || ||||||| GTGTTAAACA CATACTTCGA TATC-TTCGG AGACCAT-GA AATAGG-GTA ---TATTCCA 654 ATAATTCCAA GTCAGAACTG ATTGATTACG CAGAT 82724 | | ||| | |||| ||| ||||||||| || || ACGAATCCCA GTCATGACTA ATTGATTACA CAAAT 689 hqPGS_C08SLm0119I05.1+_SGN-E353811+ (82034 82724) ******************************************************************************** EST sequence 19 +strand 638 n (File: SGN-E205887+) 1 CGATTTGTCC CTGCATTTTT ATTAAACGGT CGGGGTCTGA ATTTGTAATA ATAGCTGTGT 61 ATGTTGATGA TTTGAACATC ATTGGCACTG GTAAAGAGCT TTTAGAAGCT ATTGAGTGTC 121 TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA ATTTTGTCTT GGCCTACAGA 181 TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC GTACACAGAA AAGATACTAA 241 AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACGCC AATGGTGGTA AGATCGCTTG 301 ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA AGAGCTTCTT GGTGATGAAA 361 CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC TAACAACACT CGACCAGATA 421 TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC CCCAACAAAA AGACATTGGA 481 ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT GGACATGGGT TTATTCTATT 541 CCAATGAATC CAAATCAGAA CTGATTGGTT ACGCAGATGC AGGGTATTTA TCAGATCCGC 601 ATAAAGCCCG ATCACAAACA GGCTATTTGT TTACATGT Predicted gene structure (within gDNA segment 78873 to 84581): Exon 1 82151 82784 ( 634 n); cDNA 3 638 ( 636 n); score: 0.934 MATCH C08SLm0119I05.1+ SGN-E205887+ 0.934 634 0.994 C PGS_C08SLm0119I05.1+_SGN-E205887+ (82151 82784) Alignment (genomic DNA sequence = upper lines): ATTTGTCGCT GCATTTTCAT TAAACGGTCG GGGTCTGAAT TTGTAATAAT AGCTGTGTAT 82210 ||||||| || ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTCCCT GCATTTTTAT TAAACGGTCG GGGTCTGAAT TTGTAATAAT AGCTGTGTAT 62 GTTGATGATT TGAACATCAT TGACACTCAT AAAGATCTTT TAGAAGCCGT TGAGTGTCTG 82270 |||||||||| |||||||||| || |||| | ||||| |||| ||||||| | |||||||||| GTTGATGATT TGAACATCAT TGGCACTGGT AAAGAGCTTT TAGAAGCTAT TGAGTGTCTG 122 AAAAAAGAAT TTGAAATGAA AGATCTCGGC AAGAC-AAAT TTTTTCTTGG CCTACAGATT 82329 |||||||||| |||||||||| |||||||||| ||||| |||| ||| |||||| |||||||||| AAAAAAGAAT TTGAAATGAA AGATCTCGGC AAGACAAAAT TTTGTCTTGG CCTACAGATT 182 GAGAATTTGT CGAACGGAAT ACTTGTTCAT CAATCAACGT ACACAAAAAA GATACTAAAG 82389 |||||||||| | || ||||| |||||||||| |||||||||| ||||| |||| |||||||||| GAGAATTTGT CAAATGGAAT ACTTGTTCAT CAATCAACGT ACACAGAAAA GATACTAAAG 242 TG-TTTTACA TGGATAACAC ACATCCATTG AGTACTCCAA TGGTGGTAAG ATCGCTTTAC 82448 | ||||||| |||||||| | |||||||||| ||||| |||| |||||||||| ||||||| || CGTTTTTACA TGGATAACTC ACATCCATTG AGTACGCCAA TGGTGGTAAG ATCGCTTGAC 302 ATCAATACAC ATTCATTTAG ACCTTAAGAG AATGATGAAG AGCTTCTTGG TGATGAAACT 82508 ||||||||| || ||||| | |||| ||||| |||||||||| |||||||||| |||||||||| ATCAATACAG ATCCATTTCG ACCTCAAGAG AATGATGAAG AGCTTCTTGG TGATGAAACT 362 CCTTACCTTA GTGCGATTGG GGCACTAATG TACCTTGCTA ACAATACTCG ACCAGATATC 82568 ||||| |||| ||||||| || |||||||||| |||||||||| |||| ||||| |||||||||| CCTTATCTTA GTGCGATCGG GGCACTAATG TACCTTGCTA ACAACACTCG ACCAGATATC 422 TGTTTTGCAG TAAGTCTACT AGAAAGATTC AGTTCCTCCC CAACAAAAAG ACATTGGAAT 82628 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| TGTTTTGCAG TAAGTCTACT GGCAAGATTC AGTTCCTCCC CAACAAAAAG ACATTGGAAT 482 GGTGTTAAAC ACATACTTCT ATATCTTTGG GGGACCATGG ACATGGGTTT ATTCTATTCC 82688 |||||||||| ||||||||| ||||||| | |||||||||| |||||||||| |||||||||| GGTGTTAAAC ACATACTTCG ATATCTTCGA GGGACCATGG ACATGGGTTT ATTCTATTCC 542 AATAATTCCA AGTCAGAACT GATTGATTAC GCAGATGCAG GGTATTTATC TGATCCGCAT 82748 ||| | |||| | |||||||| ||||| |||| |||||||||| |||||||||| ||||||||| AATGAATCCA AATCAGAACT GATTGGTTAC GCAGATGCAG GGTATTTATC AGATCCGCAT 602 AAAACTTGAT CACAAATAGG CTATTTGTTT ACATGT 82784 ||| | ||| |||||| ||| |||||||||| |||||| AAAGCCCGAT CACAAACAGG CTATTTGTTT ACATGT 638 hqPGS_C08SLm0119I05.1+_SGN-E205887+ (82151 82784) ******************************************************************************** EST sequence 56 +strand 628 n (File: SGN-E209835+) 1 ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGGCACTG GTAAAGAGCT 61 TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA 121 ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC 181 GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACTCC 241 AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA 301 AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC 361 TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC 421 CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT 481 GGACATGGGT TTATTCTATT CCAATGAATC CAAATCAGAA CTGATTGGTT ACGCAGATGC 541 AGGGTATTTA TCAGATCCGC ATAAAGCCCG ATCACAAACA GGCTATTTGT TTACATGTGG 601 AGACACGGCA ATATCTTGGC GATCAATG Predicted gene structure (within gDNA segment 79273 to 84881): Exon 1 82189 82814 ( 626 n); cDNA 1 628 ( 628 n); score: 0.933 MATCH C08SLm0119I05.1+ SGN-E209835+ 0.933 626 0.997 C PGS_C08SLm0119I05.1+_SGN-E209835+ (82189 82814) Alignment (genomic DNA sequence = upper lines): ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGACACTC ATAAAGATCT 82248 |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| |||||| || ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGGCACTG GTAAAGAGCT 60 TTTAGAAGCC GTTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGAC-AA 82307 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA 120 ATTTTTTCTT GGCCTACAGA TTGAGAATTT GTCGAACGGA ATACTTGTTC ATCAATCAAC 82367 ||||| |||| |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC 180 GTACACAAAA AAGATACTAA AGTG-TTTTA CATGGATAAC ACACATCCAT TGAGTACTCC 82426 ||||||| || |||||||||| || | ||||| |||||||||| ||||||||| |||||||||| GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACTCC 240 AATGGTGGTA AGATCGCTTT ACATCAATAC ACATTCATTT AGACCTTAAG AGAATGATGA 82486 |||||||||| ||||||||| |||||||||| | || ||||| ||||| ||| |||||||||| AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA 300 AGAGCTTCTT GGTGATGAAA CTCCTTACCT TAGTGCGATT GGGGCACTAA TGTACCTTGC 82546 |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC 360 TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTAGAAAGAT TCAGTTCCTC 82606 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC 420 CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CTATATCTTT GGGGGACCAT 82666 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| | |||||||| CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT 480 GGACATGGGT TTATTCTATT CCAATAATTC CAAGTCAGAA CTGATTGATT ACGCAGATGC 82726 |||||||||| |||||||||| ||||| | || ||| |||||| ||||||| || |||||||||| GGACATGGGT TTATTCTATT CCAATGAATC CAAATCAGAA CTGATTGGTT ACGCAGATGC 540 AGGGTATTTA TCTGATCCGC ATAAAACTTG ATCACAAATA GGCTATTTGT TTACATGTGA 82786 |||||||||| || ||||||| ||||| | | |||||||| | |||||||||| ||||||||| AGGGTATTTA TCAGATCCGC ATAAAGCCCG ATCACAAACA GGCTATTTGT TTACATGTGG 600 AGACACGACA ATATCTTGGA AATCAATG 82814 ||||||| || ||||||||| ||||||| AGACACGGCA ATATCTTGGC GATCAATG 628 hqPGS_C08SLm0119I05.1+_SGN-E209835+ (82189 82814) ******************************************************************************** EST sequence 55 +strand 576 n (File: SGN-E209830+) 1 ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGGCACTG GTAAAGAGCT 61 TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA 121 ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC 181 GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACTCC 241 AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA 301 AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC 361 TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC 421 CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT 481 GGACATGGGT TTATTCTATT CCAATGAATG CAAATCAGAA CTGATTGGTT ACGCAGATGC 541 AAGGTATTTA TCAGATCCGC ATAAAGCCCG ATCACA Predicted gene structure (within gDNA segment 79273 to 84361): Exon 1 82189 82762 ( 574 n); cDNA 1 576 ( 576 n); score: 0.932 MATCH C08SLm0119I05.1+ SGN-E209830+ 0.932 574 0.997 C PGS_C08SLm0119I05.1+_SGN-E209830+ (82189 82762) Alignment (genomic DNA sequence = upper lines): ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGACACTC ATAAAGATCT 82248 |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| |||||| || ATTTGTAATA ATAGCTGTGT ATGTTGATGA TTTGAACATC ATTGGCACTG GTAAAGAGCT 60 TTTAGAAGCC GTTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGAC-AA 82307 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA 120 ATTTTTTCTT GGCCTACAGA TTGAGAATTT GTCGAACGGA ATACTTGTTC ATCAATCAAC 82367 ||||| |||| |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC 180 GTACACAAAA AAGATACTAA AGTG-TTTTA CATGGATAAC ACACATCCAT TGAGTACTCC 82426 ||||||| || |||||||||| || | ||||| |||||||||| ||||||||| |||||||||| GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACTCC 240 AATGGTGGTA AGATCGCTTT ACATCAATAC ACATTCATTT AGACCTTAAG AGAATGATGA 82486 |||||||||| ||||||||| |||||||||| | || ||||| ||||| ||| |||||||||| AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA 300 AGAGCTTCTT GGTGATGAAA CTCCTTACCT TAGTGCGATT GGGGCACTAA TGTACCTTGC 82546 |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC 360 TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTAGAAAGAT TCAGTTCCTC 82606 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC 420 CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CTATATCTTT GGGGGACCAT 82666 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| | |||||||| CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT 480 GGACATGGGT TTATTCTATT CCAATAATTC CAAGTCAGAA CTGATTGATT ACGCAGATGC 82726 |||||||||| |||||||||| ||||| | | ||| |||||| ||||||| || |||||||||| GGACATGGGT TTATTCTATT CCAATGAATG CAAATCAGAA CTGATTGGTT ACGCAGATGC 540 AGGGTATTTA TCTGATCCGC ATAAAACTTG ATCACA 82762 | |||||||| || ||||||| ||||| | | |||||| AAGGTATTTA TCAGATCCGC ATAAAGCCCG ATCACA 576 hqPGS_C08SLm0119I05.1+_SGN-E209830+ (82189 82762) ******************************************************************************** EST sequence 48 +strand 554 n (File: SGN-E299938+) 1 CTCGTGCCCG TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG 61 GCAAGACAAA ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC 121 ATCAATCAAC GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT 181 TGAGTACCCC AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG 241 AGAATGATGA AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA 301 TGTACCTTGC TAACCACACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT 361 TCAGTTCCTC CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC 421 GAGGGACCAT GGACATGGGT TTATTCTATT CCAATGAATC CAAATCAGAA CTGATTGGTT 481 ACGCAGATGC AGGGTATTTA TCAGATCCCG CATAAAGCCC GATCACAAAC AGGCTATTTG 541 TTTACATGTG GAGA Predicted gene structure (within gDNA segment 79773 to 84641): Exon 1 82249 82789 ( 541 n); cDNA 11 554 ( 544 n); score: 0.925 MATCH C08SLm0119I05.1+ SGN-E299938+ 0.925 541 0.977 C PGS_C08SLm0119I05.1+_SGN-E299938+ (82249 82789) Alignment (genomic DNA sequence = upper lines): TTTAGAAGCC GTTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGAC-AA 82307 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTTAGAAGCT ATTGAGTGTC TGAAAAAAGA ATTTGAAATG AAAGATCTCG GCAAGACAAA 70 ATTTTTTCTT GGCCTACAGA TTGAGAATTT GTCGAACGGA ATACTTGTTC ATCAATCAAC 82367 ||||| |||| |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| ATTTTGTCTT GGCCTACAGA TTGAGAATTT GTCAAATGGA ATACTTGTTC ATCAATCAAC 130 GTACACAAAA AAGATACTAA AGTG-TTTTA CATGGATAAC ACACATCCAT TGAGTACTCC 82426 ||||||| || |||||||||| || | ||||| |||||||||| ||||||||| ||||||| || GTACACAGAA AAGATACTAA AGCGTTTTTA CATGGATAAC TCACATCCAT TGAGTACCCC 190 AATGGTGGTA AGATCGCTTT ACATCAATAC ACATTCATTT AGACCTTAAG AGAATGATGA 82486 |||||||||| ||||||||| |||||||||| | || ||||| ||||| ||| |||||||||| AATGGTGGTA AGATCGCTTG ACATCAATAC AGATCCATTT CGACCTCAAG AGAATGATGA 250 AGAGCTTCTT GGTGATGAAA CTCCTTACCT TAGTGCGATT GGGGCACTAA TGTACCTTGC 82546 |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| AGAGCTTCTT GGTGATGAAA CTCCTTATCT TAGTGCGATC GGGGCACTAA TGTACCTTGC 310 TAACAATACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTAGAAAGAT TCAGTTCCTC 82606 |||| | ||| |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| TAACCACACT CGACCAGATA TCTGTTTTGC AGTAAGTCTA CTGGCAAGAT TCAGTTCCTC 370 CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CTATATCTTT GGGGGACCAT 82666 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| | |||||||| CCCAACAAAA AGACATTGGA ATGGTGTTAA ACACATACTT CGATATCTTC GAGGGACCAT 430 GGACATGGGT TTATTCTATT CCAATAATTC CAAGTCAGAA CTGATTGATT ACGCAGATGC 82726 |||||||||| |||||||||| ||||| | || ||| |||||| ||||||| || |||||||||| GGACATGGGT TTATTCTATT CCAATGAATC CAAATCAGAA CTGATTGGTT ACGCAGATGC 490 AGGGTATTTA TCTGAT-CCG CATAAAACTT GATCACAAAT AGGCTATTTG TTTACATGTG 82785 |||||||||| || ||| ||| |||||| | ||||||||| |||||||||| |||||||||| AGGGTATTTA TCAGATCCCG CATAAAGCCC GATCACAAAC AGGCTATTTG TTTACATGTG 550 AAGA 82789 ||| GAGA 554 hqPGS_C08SLm0119I05.1+_SGN-E299938+ (82249 82789) ******************************************************************************** EST sequence 61 +strand 399 n (File: SGN-E200850+) 1 TTTATCAGAT CCGCATAAAG CCCGATCACA AACAGGCTAT TTGTTTACAT GTGGAGACAC 61 GGCAATATCT TGGCGATCAA TGAAGCAAAC GTTGGTAGCC ACTTCTTCAA ATCATGCAGA 121 AATAATAGCC ATCCATGAAG CAAGTCGAGA GTGCGTCTGG TTGAGATCAA TGACCCATCA 181 TATTCAGGAA ATGTGTGGTT TTTCTTTGAA AAAGAATATA CCAACCACAA TGCACGAAGA 241 TAATGCTGCA TGTATAGCTC AATTGAAAGG AGGATACATC AAAGGAGACC GGACAAAGCA 301 TATCTCACCA AAGTTCTTTT TCACGCATGA TCTTTAACAA AATGGTGAGA TAGAAGTTCA 361 ACAAATTCGT TCAAGTGATA ATCTTGCTGA TTTATTCAC Predicted gene structure (within gDNA segment 81718 to 85702): Exon 1 83083 83313 ( 231 n); cDNA 1 231 ( 231 n); score: 0.944 Intron 1 83314 84764 (1451 n); Pd: 0.747 (s: 0.98), Pa: 0.952 (s: 0) Exon 2 84765 84778 ( 14 n); cDNA 232 244 ( 13 n); score: 0.714 MATCH C08SLm0119I05.1+ SGN-E200850+ 0.944 245 0.614 C PGS_C08SLm0119I05.1+_SGN-E200850+ (83083 83313,84765 84778) Alignment (genomic DNA sequence = upper lines): TTTATCTGAT CCGCATAAAA CTTGATCACA AATAGGCTAT TTGTTTACAT GTGGAGACAC 83142 |||||| ||| ||||||||| | ||||||| || ||||||| |||||||||| |||||||||| TTTATCAGAT CCGCATAAAG CCCGATCACA AACAGGCTAT TTGTTTACAT GTGGAGACAC 60 GACAATATCT TGGAAATCAA TGAAACAAAC GTTGGTAGCC ACTTCTTCAA ATCATGCAGA 83202 | |||||||| ||| ||||| |||| ||||| |||||||||| |||||||||| |||||||||| GGCAATATCT TGGCGATCAA TGAAGCAAAC GTTGGTAGCC ACTTCTTCAA ATCATGCAGA 120 AATTAAAGTC ATCCATGAAG CAAGTCGAGA GTGCGTCTGG TTGAGATCAA TGACCCATCA 83262 ||| | || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATAGCC ATCCATGAAG CAAGTCGAGA GTGCGTCTGG TTGAGATCAA TGACCCATCA 180 TATTCAGGAA ATGTGTGGTT TTTCTTTGAA AAAGAATATA TCAACCACAA TGTAAGAATT 83322 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | TATTCAGGAA ATGTGTGGTT TTTCTTTGAA AAAGAATATA CCAACCACAA T......... 231 AAGGATTAAT ACGAGTATTT TATCATAATA CTAATATTAA TTGATGTATA ATCTGATTAG 83382 .......... .......... .......... .......... .......... .......... 231 GTCTTGAGAA ATGTTTTGCT GAATAAGTAA TTAATATTAA TAATAGAATA AAATATATAT 83442 .......... .......... .......... .......... .......... .......... 231 TTTTTCGAGT CTTGAGCAAG TAAATCTTCT TTTGGTTGAG CTTAAACCTA TCTTGCTTAC 83502 .......... .......... .......... .......... .......... .......... 231 TTGAGCTTAG ACCTATCTTA CTTACTTAGA TAAAGAAACG GATTGCTAGT CTTGACAGCT 83562 .......... .......... .......... .......... .......... .......... 231 CGAAAGTGCC TTAATTAGAC GGAAGTCTTC AAATTTTCTC AGATTACTAT TGCTATGTTA 83622 .......... .......... .......... .......... .......... .......... 231 AAAGTGAAAA ATTATTTTTA GAATAGTAGA CGATTAAAAA TGAACAAAGA ATGTATATGG 83682 .......... .......... .......... .......... .......... .......... 231 TGACGTTAAA TTTTACGAAG CCAAATCAAT TTTAAAGTTA TTTTTAACCT CATCCTTTGA 83742 .......... .......... .......... .......... .......... .......... 231 TTTTTTTTGA CCCTCTTCAT TTTTCTCCTT TTTTTATATA TATATATATT TCATTTTTAA 83802 .......... .......... .......... .......... .......... .......... 231 AAAAAAAATA TAATACATTG TATATACATT ATCTATATTG TATATGTATA TATAATGTAT 83862 .......... .......... .......... .......... .......... .......... 231 ATACTTCGTA TAATCATGTA TAAATATATG AAACCAACTC AAATTACATA CCTTTAACCA 83922 .......... .......... .......... .......... .......... .......... 231 CAATTTGATC TGAAAGCTCG AGTTTGTCAA CTAAAAATCG AGAGGTTGAA AAAAGATAAA 83982 .......... .......... .......... .......... .......... .......... 231 TAATGCAAGT GACCTATCTT ACAAATTAAA GTTATTTACT TAATTTGATG CACTTTCCAT 84042 .......... .......... .......... .......... .......... .......... 231 TCTTTTGGTG ATACTCAACT TTCGTTTTTA ATTCAAAAGT CATTTAATTA CGATTTTTTT 84102 .......... .......... .......... .......... .......... .......... 231 TCACAAAAAG TCATTCAACA TATTAATTAT TTTTTTATTA AAATTTACTG ACATGAAATT 84162 .......... .......... .......... .......... .......... .......... 231 TTAATTTTTA ACCAAAATTT TAAAAACCAA AAATATATTC ATTTAAACCA TTTAACGACT 84222 .......... .......... .......... .......... .......... .......... 231 CGTCCCACTT AAAATATAAT ATTAAACTTT TTATTTTACC ATTAGTTTCC TAAATCATCC 84282 .......... .......... .......... .......... .......... .......... 231 TCCCTCGTCT CCCCATTCTT TCCCTCTACT TCTTCTCTTT TCTTTCCCTT GTTAATTTCT 84342 .......... .......... .......... .......... .......... .......... 231 CAATTTCAAC CTCTTATTCA CATTATATAC AATTTTGGAC AAACAAGGGT TAGCCGGATG 84402 .......... .......... .......... .......... .......... .......... 231 ACTAAGGATA TAAAATCTGA AATATTAATT TATTTGTATT CGATATTTAT ATTAATTTTG 84462 .......... .......... .......... .......... .......... .......... 231 ATAGGTAAAA ATTAAAGTGA GAATAGAAAT TAAAGTGAAA ATACAAATTA CTTAATCATG 84522 .......... .......... .......... .......... .......... .......... 231 CGTAGTGATA AGAACATATA TAAAAGATAA ATGACTTCAA TATGTTGATC AAATTGCGAT 84582 .......... .......... .......... .......... .......... .......... 231 TAATTTTCTT TTTTCCGCGT GAAAAATTTC TTTCGATCAC TATTATGTCC TTTCATGTTT 84642 .......... .......... .......... .......... .......... .......... 231 AGCTAAAGTT TCCAACTTAG AGTATATTTT CAAAAACTGT ATCGGGTTTG ACCAATAATG 84702 .......... .......... .......... .......... .......... .......... 231 TGTAACACTA AATATTTTTC ATTGCACTAT GATTAGGACT TTATGTCATC ACTAATTGAT 84762 .......... .......... .......... .......... .......... .......... 231 AGGCTATTAA GAAAAT 84778 || | || || ||| ..GC-ACGAA GATAAT 244 hqPGS_C08SLm0119I05.1+_SGN-E200850+ (83083 83313) ******************************************************************************** EST sequence 87 -strand 663 n (File: SGN-E391539-) 1 ATTAATGACC CATCATATTC AGGAAATGTG TGGTTTTTCT TTGAAAAAGA ATATTCCAAC 61 CACAATGTAC GAAGATAATG CTGCATGTAT AGCTCAATTG AAAGGAGGAT ACATCAAAGG 121 AGACCGGACA AAGCATATTT CACCAAAGTT TTTTTTCACG CATGATTTTC AACAAAATGG 181 TGAGATAGAA GTTCAACAAA TTCGTTCAAG TGATAATTTT GGTGATTTAT TCACAAAGGC 241 ATTGCCAACA TCAACGTTTG AGAAGTTGAG ATACAAGATT GGAATGCGCC GTTTCCAAGA 301 TATCAAGTAA AGTTTTCATC AGGGGGAGTG AAATACGCGT TGTACTTTTT TCCTTAAATA 361 TGGTTTTGTC CCAAGTTGGG TTTTTCTGGT AAGGTTTTTA ATGAGGCAGC AAATAAAGGG 421 TATTATGTAT ATTTATGTAC TTTTTTTTAC ATAGATATCC AAGGGGGAGT GTTGTAAAAT 481 AATTGTAGTG TAAAATAATT GTAGTGTCAT GTGGAATATG ACATCACTAA TGACCTTGTA 541 TGCATTAATG TATGGGTATA AATAGCCACT ATATGAAACA TATAAACACA CACTTTGAAA 601 TGATATATTT TTTAATATTT TTTTTTTTTT TGGAAAAAAA AAAAAAAAAA AAAAAAAAAA 661 AAA Predicted gene structure (within gDNA segment 82611 to 90591): Exon 1 83248 83313 ( 66 n); cDNA 1 66 ( 66 n); score: 0.955 Intron 1 83314 88233 (4920 n); Pd: 0.747 (s: 0.96), Pa: 0.754 (s: 0) Exon 2 88234 88240 ( 7 n); cDNA 67 72 ( 6 n); score: 0.571 Intron 2 88241 89582 (1342 n); Pd: 0.880 (s: 0), Pa: 0.466 (s: 0) Exon 3 89583 89592 ( 10 n); cDNA 73 82 ( 10 n); score: 0.700 PPA cDNA 634 663 MATCH C08SLm0119I05.1+ SGN-E391539- 0.955 83 0.125 C PGS_C08SLm0119I05.1+_SGN-E391539- (83248 83313,88234 88240,89583 89592) Alignment (genomic DNA sequence = upper lines): ATCAATGACC CATCATATTC AGGAAATGTG TGGTTTTTCT TTGAAAAAGA ATATATCAAC 83307 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| ATTAATGACC CATCATATTC AGGAAATGTG TGGTTTTTCT TTGAAAAAGA ATATTCCAAC 60 CACAATGTAA GAATTAAGGA TTAATACGAG TATTTTATCA TAATACTAAT ATTAATTGAT 83367 |||||| CACAAT.... .......... .......... .......... .......... .......... 66 GTATAATCTG ATTAGGTCTT GAGAAATGTT TTGCTGAATA AGTAATTAAT ATTAATAATA 83427 .......... .......... .......... .......... .......... .......... 66 GAATAAAATA TATATTTTTT CGAGTCTTGA GCAAGTAAAT CTTCTTTTGG TTGAGCTTAA 83487 .......... .......... .......... .......... .......... .......... 66 ACCTATCTTG CTTACTTGAG CTTAGACCTA TCTTACTTAC TTAGATAAAG AAACGGATTG 83547 .......... .......... .......... .......... .......... .......... 66 CTAGTCTTGA CAGCTCGAAA GTGCCTTAAT TAGACGGAAG TCTTCAAATT TTCTCAGATT 83607 .......... .......... .......... .......... .......... .......... 66 ACTATTGCTA TGTTAAAAGT GAAAAATTAT TTTTAGAATA GTAGACGATT AAAAATGAAC 83667 .......... .......... .......... .......... .......... .......... 66 AAAGAATGTA TATGGTGACG TTAAATTTTA CGAAGCCAAA TCAATTTTAA AGTTATTTTT 83727 .......... .......... .......... .......... .......... .......... 66 AACCTCATCC TTTGATTTTT TTTGACCCTC TTCATTTTTC TCCTTTTTTT ATATATATAT 83787 .......... .......... .......... .......... .......... .......... 66 ATATTTCATT TTTAAAAAAA AAATATAATA CATTGTATAT ACATTATCTA TATTGTATAT 83847 .......... .......... .......... .......... .......... .......... 66 GTATATATAA TGTATATACT TCGTATAATC ATGTATAAAT ATATGAAACC AACTCAAATT 83907 .......... .......... .......... .......... .......... .......... 66 ACATACCTTT AACCACAATT TGATCTGAAA GCTCGAGTTT GTCAACTAAA AATCGAGAGG 83967 .......... .......... .......... .......... .......... .......... 66 TTGAAAAAAG ATAAATAATG CAAGTGACCT ATCTTACAAA TTAAAGTTAT TTACTTAATT 84027 .......... .......... .......... .......... .......... .......... 66 TGATGCACTT TCCATTCTTT TGGTGATACT CAACTTTCGT TTTTAATTCA AAAGTCATTT 84087 .......... .......... .......... .......... .......... .......... 66 AATTACGATT TTTTTTCACA AAAAGTCATT CAACATATTA ATTATTTTTT TATTAAAATT 84147 .......... .......... .......... .......... .......... .......... 66 TACTGACATG AAATTTTAAT TTTTAACCAA AATTTTAAAA ACCAAAAATA TATTCATTTA 84207 .......... .......... .......... .......... .......... .......... 66 AACCATTTAA CGACTCGTCC CACTTAAAAT ATAATATTAA ACTTTTTATT TTACCATTAG 84267 .......... .......... .......... .......... .......... .......... 66 TTTCCTAAAT CATCCTCCCT CGTCTCCCCA TTCTTTCCCT CTACTTCTTC TCTTTTCTTT 84327 .......... .......... .......... .......... .......... .......... 66 CCCTTGTTAA TTTCTCAATT TCAACCTCTT ATTCACATTA TATACAATTT TGGACAAACA 84387 .......... .......... .......... .......... .......... .......... 66 AGGGTTAGCC GGATGACTAA GGATATAAAA TCTGAAATAT TAATTTATTT GTATTCGATA 84447 .......... .......... .......... .......... .......... .......... 66 TTTATATTAA TTTTGATAGG TAAAAATTAA AGTGAGAATA GAAATTAAAG TGAAAATACA 84507 .......... .......... .......... .......... .......... .......... 66 AATTACTTAA TCATGCGTAG TGATAAGAAC ATATATAAAA GATAAATGAC TTCAATATGT 84567 .......... .......... .......... .......... .......... .......... 66 TGATCAAATT GCGATTAATT TTCTTTTTTC CGCGTGAAAA ATTTCTTTCG ATCACTATTA 84627 .......... .......... .......... .......... .......... .......... 66 TGTCCTTTCA TGTTTAGCTA AAGTTTCCAA CTTAGAGTAT ATTTTCAAAA ACTGTATCGG 84687 .......... .......... .......... .......... .......... .......... 66 GTTTGACCAA TAATGTGTAA CACTAAATAT TTTTCATTGC ACTATGATTA GGACTTTATG 84747 .......... .......... .......... .......... .......... .......... 66 TCATCACTAA TTGATAGGCT ATTAAGAAAA TATCACTTGT CTTCCCACCA CAAGATGCAA 84807 .......... .......... .......... .......... .......... .......... 66 ATTGAAGAAA GAGCTTCTAT TAAGAAAATT AGACATAGTT AATTAAATAA AGTTTCTGAT 84867 .......... .......... .......... .......... .......... .......... 66 AGAATATATA CCTTCACTTA ACAAGTAATG GACCAGGCCC CTTACTACAC TAATGAATAA 84927 .......... .......... .......... .......... .......... .......... 66 AAAGAAAGTT AAATGCAGTA AAATCAACAC GATGATTTTA CGTGAAAACC TCCTTGCTTA 84987 .......... .......... .......... .......... .......... .......... 66 AGGGAGTAAA ACCACGACCT GTCTCACAGG ATTTTCAATC GTTTTCACTA ATCTTCAAAA 85047 .......... .......... .......... .......... .......... .......... 66 GCAAAAGTAA AACACGATTA CACCAAACGT AAGAAAGAGT TATCAATCTT ACAGTTAAGA 85107 .......... .......... .......... .......... .......... .......... 66 AATAGTCCAC TATTGCTTAA CAAGCCTAAG TAGAAAACAA TCTACCCACT AAGCTATCCC 85167 .......... .......... .......... .......... .......... .......... 66 ACCTGGACAA CCTAGACTTT TAACACAACA CACCAATTCC TTTGTAGATT CAGGAATGGT 85227 .......... .......... .......... .......... .......... .......... 66 TTACAGTTTA AGAACAAGAG AATGCATTCC TAAACAACTA GACAAAAAGC TCCAGATATT 85287 .......... .......... .......... .......... .......... .......... 66 GCTGTTGTTC TTGGAATAAT TCCGCCTTTG CTTTGTAGTA GCCTTTGCAA GAGTTCTTGA 85347 .......... .......... .......... .......... .......... .......... 66 AAATTTTTTA TCAAGTTGCA AAAGTTGCAC AAAATGTTTA GAAAAGTGCC TTTTATATGG 85407 .......... .......... .......... .......... .......... .......... 66 GCAAGTCACT TTCCTAAACC TCTTTGCCAT TGGCTGGAAA AGTCACACTT TCTGACGCCA 85467 .......... .......... .......... .......... .......... .......... 66 TCGGGAAGTG TGCACCTACT TTCTGTACCG TCTCCAGCTG GCAATCAACT GGCTCCTCAT 85527 .......... .......... .......... .......... .......... .......... 66 CATGAGAGCC TGGTACCTCT ACTAGGTCCC TGGGTTTGTT TCATCTACAA TACTCAAGCA 85587 .......... .......... .......... .......... .......... .......... 66 AGAACCCTGC AATAGTCAAT TAAGAAACTG GTACCTTTAC AAGGTTCCCA AGTTTGTCTA 85647 .......... .......... .......... .......... .......... .......... 66 ATCATCAATA CTACAAATAA CATTTTCCCC CTTTTTGATG ATGACAAACA CTGAAGTCAT 85707 .......... .......... .......... .......... .......... .......... 66 AATCTAAGAT CCTCTCCAAC TTTGTTCACC CTTTTTATAT TCCCCCTCAC TGTATGTTCC 85767 .......... .......... .......... .......... .......... .......... 66 CCCTCACTAA AATATCATTT AGCTACGCAC TACACAGTTT TACTTCCCCC TTTTGGCATC 85827 .......... .......... .......... .......... .......... .......... 66 ATAAAAAAGA AACGCAGTAA ACCAGAGATG TGAGCAGAAA CACTGAAAAA GATCAAGGCT 85887 .......... .......... .......... .......... .......... .......... 66 AAAAAGCAAC TAATCAGTAA AGAAAAAGCA TGCACAAGAG GAGATAATTA GAACAGCACA 85947 .......... .......... .......... .......... .......... .......... 66 GGAATGAATT AACCAGTACG CCATAATAAC ATAAATACAT TAGAACCAAA CTGAACATTC 86007 .......... .......... .......... .......... .......... .......... 66 TTCAACACAT TGAAAAGCCA CAAAAAAAAT TTGACACAAG GGGGGTTCAA CAAACTCGGA 86067 .......... .......... .......... .......... .......... .......... 66 AGAGGGAGGA GGATGAGACA GGGATTGGAT AACAAGAGTG AGTCGTGCAT TGACAGCATC 86127 .......... .......... .......... .......... .......... .......... 66 ATTGTCTTTG ATGGCCTTTT CTTGCAGGGC AGTTATCTTC GCCTTCAACT TAGTATTCTC 86187 .......... .......... .......... .......... .......... .......... 66 TTTCTCCAGA GCTTGAACCA CTGAAGAACC AGGTCCCTCA CTTTGTGCAG TAAGCAGTTC 86247 .......... .......... .......... .......... .......... .......... 66 TGCTTTGAGT ATAGCAATCT CTGCCTCTTT ACCACTTAAC TGCACAGTAA GCTCCTCAAC 86307 .......... .......... .......... .......... .......... .......... 66 CTCATTCTTA AGCTGCTCCT GATCATCAAT CAGTTGGGCC ATTTTGCTCT TTGGATAGCC 86367 .......... .......... .......... .......... .......... .......... 66 TCTTCCTTCA ATGCATTCAC ACTCAACCAA GGTAATTTCG GAGATAGTCT GCTTAACTGT 86427 .......... .......... .......... .......... .......... .......... 66 CCCCATTTTT CCCACACTAA GAGGAATTTG AAAATTCTTG AATACCTCCG TAAGAAAGTA 86487 .......... .......... .......... .......... .......... .......... 66 TCCATAACCC ATTCCGTGAA CACCTTTCCT CTCAATGACA GTTTTGTGGA TATGCTCATG 86547 .......... .......... .......... .......... .......... .......... 66 CATTAGACCA GGTAGGTTCA AGGCGTCGAA GTTGCACAAC ATCTCCATCA CAAACAAATC 86607 .......... .......... .......... .......... .......... .......... 66 AGCAGCAGTT TCTACTGTCC TCTTTTCAGT GCGAGGAAGG AGAACTTTGT TGATGAACTC 86667 .......... .......... .......... .......... .......... .......... 66 AAAAACCAAC TGATACTCAC TCTTCATGAT TTTCTTATAA ATCCCAGCAA CCTTGGTTGT 86727 .......... .......... .......... .......... .......... .......... 66 GGGTGTCTTA GAAATCACAG CAGCAAACTC AGAAGAGCAA GTTCTACCCA ATACAGACCC 86787 .......... .......... .......... .......... .......... .......... 66 GGTGCCCTCT CTAGGCACCC TGAGAATTTT GCTCAACACA CCCTCATCTA AACATATAGC 86847 .......... .......... .......... .......... .......... .......... 66 AATATTATTT ACTCGTGTGA GGATGCTCCC ATCATCCTTG AATTGAATAT TATAGTAAAA 86907 .......... .......... .......... .......... .......... .......... 66 TTCACGCACT TCTTCTTCAT GGAGAATGAG GGATTTCCTG TTGAACAAAT GTAACCAAGA 86967 .......... .......... .......... .......... .......... .......... 66 TTGGATCTCA ACCATGTCGT GAAGACAGTC CATGCCAGGA AGAGTTATGA TCCCCATATC 87027 .......... .......... .......... .......... .......... .......... 66 AAAAATTCTT CCTGCCAAAA CAGCTTGGTT TCTCAGACTG TCAACCACCT CCTGCATGTT 87087 .......... .......... .......... .......... .......... .......... 66 GACACCCTCA ACTTTCCTGG CTTGGGAACC AGGTCCCTGT GACCGCTTTC TCTTTTTCTC 87147 .......... .......... .......... .......... .......... .......... 66 AGATCTCTTC CCTTTTGACT GTGACTTTTC AACCTTCCTT GTAACCCTTT CCCTTTTCTT 87207 .......... .......... .......... .......... .......... .......... 66 TTATGACTTC TTCTTCTTAT TTTTCTTGTC CACCTCTTCT TCAGACAACT CCACCACATT 87267 .......... .......... .......... .......... .......... .......... 66 AGCTTCAGGT AATTTAAAAT TTGATACATT GAAGGTTCTT GCACTTCTAA CTGCAGCAGT 87327 .......... .......... .......... .......... .......... .......... 66 AGAACGTGCA CTTGCCTTCA AGGCATCAAC CATCAACTTT TGTGCAGCAG ACCTTTTAGT 87387 .......... .......... .......... .......... .......... .......... 66 AGGTCGTCTC CTAGGGGCCT CCTCCACAAC CTTTTCCTTC CCTTTTCTAG ATCCCACCCG 87447 .......... .......... .......... .......... .......... .......... 66 TTCTCTTCTA TCAACCTTCC ATTTTAATGG CTCCTCCTCA CTAGCAGAGT CAGAGGAAGA 87507 .......... .......... .......... .......... .......... .......... 66 GGAAGAAGAG TACCTACCTA AATCAGGGGT TTTATCAAAG ATAGGTTGAG TAGGTCTTAC 87567 .......... .......... .......... .......... .......... .......... 66 CTCTTCCCTT TCCAAGACTT CAGTATGCTC TGCCCTTGCT TCTTCTCGCA TCATGGCCAG 87627 .......... .......... .......... .......... .......... .......... 66 GCTTTCAACC ACGAGTTCTT CACTCGCTGC CAGTATGTTG GACTTGGAAG CCCTATGTTT 87687 .......... .......... .......... .......... .......... .......... 66 TGGTAGATAC CCTTCAAACA TATTGTCAGG CAACATGTCT TGAAAAGGAC CAGGTCCAGT 87747 .......... .......... .......... .......... .......... .......... 66 AGGCACTGCA GAAGTATTTA GATCTATGGC AAAAAAAGGG TTATCAGGAG TGTCTTGGTG 87807 .......... .......... .......... .......... .......... .......... 66 AGGACTGGGA GAAAGAGGAG GTCTGGCTTG TGTATTGGTT AGAGAATAGA AAGCAAGAGG 87867 .......... .......... .......... .......... .......... .......... 66 CTCGATTTCA CTGAGAGCAT TCAACATTTG TTTGGAAGAG GATGAAGCAG AAGACATGGT 87927 .......... .......... .......... .......... .......... .......... 66 TTTCACACTA GGAAGTATTT TGCTTGAATC AGCGAAGAGA AGAAAAAGAA GACGAAATTT 87987 .......... .......... .......... .......... .......... .......... 66 GCCTTTCAAG TTTTTGCAAA AACCCTTCGT GAACAGTAAG AAGAAATTAA GAGACAGATG 88047 .......... .......... .......... .......... .......... .......... 66 AGAGTTTCAA GAAGAAGTAA TGATATTTAA AGAAAGTAAA AAGGTGCCAG GTCCGTGATT 88107 .......... .......... .......... .......... .......... .......... 66 GGATGCGTCA TTTGAGAAAG AAACGATGGG ACTGATCAGT CAGAATAACC GATGGCTGAC 88167 .......... .......... .......... .......... .......... .......... 66 ACGTGGCATT ATCAACGGTC ATATTATTTC AGTTTCAATT TAATGTATAA ATGCTAACCT 88227 .......... .......... .......... .......... .......... .......... 66 GGACAGGCAC CAGGTACCAT AGGACAGTTA AACTTCATTC CTCAGTTGTT CTAGTTGCTT 88287 | || | ......GTAC GA-....... .......... .......... .......... .......... 72 CTCTTGTTAA GCAGGTCCTC ACTGAAAGTA TACCTACAGA AGGCACAAAA AGGGATCTTT 88347 .......... .......... .......... .......... .......... .......... 72 ATTCAGATAT GCACTCTTCG CATCCGTTTG GTACAGCTTG AACCCCATGA ATGCAGCAAA 88407 .......... .......... .......... .......... .......... .......... 72 AGCTATTAAG ATTCTAATAG CTTCCATTCT GGCAACAGGT GCAAAAGTCT CATCATAGTC 88467 .......... .......... .......... .......... .......... .......... 72 TATTCCTTCT TCTTGATTGT ATCCTTGCGC CACCAACCTG GATTTATTTC TAGTAATCAC 88527 .......... .......... .......... .......... .......... .......... 72 TCCATTTTCA TCAAGCTTGT TTCTGAAAAC CCACCTAGTT CCAATTACTG TTCTGCCTTC 88587 .......... .......... .......... .......... .......... .......... 72 AGGTCAAGGA ACCAGGTACC ATACCTTACT TCTTTCAAAC TGATGGAGTT CTTCTTGCAT 88647 .......... .......... .......... .......... .......... .......... 72 AGAATTTATC CAGTCTGCAT CACTCAATGC TTCTTTAACA TTCTTGGGCT CAATAGATGG 88707 .......... .......... .......... .......... .......... .......... 72 TATGAATGCT GAGAATGCAA CTAGATTTCT TGTTTTTGAT CTAGTATGAA TTCCAGAATT 88767 .......... .......... .......... .......... .......... .......... 72 CAAAGGAGAA ATGAGATTAT CAAGAGGATG TGATGAGCTA TGCTTCCATC CTGACCTTGG 88827 .......... .......... .......... .......... .......... .......... 72 AGCAGACTGA CTTGGCTGAT CTGCATGTTC TTCTTCATCA AGAGTGACAT CATCTTCTGG 88887 .......... .......... .......... .......... .......... .......... 72 GGAGTCTGAA GTACTCTGGC TGGAATTTTG AGTAGTACCA GGTACCATAT CATCCTTTTC 88947 .......... .......... .......... .......... .......... .......... 72 ACCCTCAGCA GCCTCATCAG GTAGACTATG ATTCTGATCA TCACAACCAT TGTTCACTTG 89007 .......... .......... .......... .......... .......... .......... 72 TTGATCTGCA TCAACTTCAC CTCCTTCAGA CTTCTTTGAT TTGAGCATTT TCATCACATC 89067 .......... .......... .......... .......... .......... .......... 72 ATCATCATCA TTTGATCCAT CATTCTTCAA GCTTCCATCT TCATCAAATA TAACATGAAT 89127 .......... .......... .......... .......... .......... .......... 72 GCTTTCTTCA ATGCATTGAG TTCTTTTTTT AAATATTCTG TAAGCCTTAC TGGATGAAGA 89187 .......... .......... .......... .......... .......... .......... 72 ATATCCAACA AACACTCCTT CATCACTTCT GGGATCAAAT TTTCCCAGAT CATCCTTTCC 89247 .......... .......... .......... .......... .......... .......... 72 ATTATTCAGC ACAAAACATT TGCACCCAAA TGCTCTAAGA TAGCTCAGCA TTGGCTTTCT 89307 .......... .......... .......... .......... .......... .......... 72 GTTGTTGAGC AGCTCATAAG GAGTCTTGTT CAAAATAGCT CTTATTAGAC ACGTGTTGGT 89367 .......... .......... .......... .......... .......... .......... 72 AACATGACAT GCTGTGTTAA CAGCTTCAAC CCAAAAACTT TGAGGAAGAT TTGATTCAAT 89427 .......... .......... .......... .......... .......... .......... 72 AATCATAGTT CTGGCAATGT TCACCAAGGT CCTGTTCTTT CTTTCCACTA CTCCATTTTG 89487 .......... .......... .......... .......... .......... .......... 72 TTGAGGAGTT CCTGGAGTAG AAAAATTATG ACTCATACCA TTTTCCATGC AGAATCTATC 89547 .......... .......... .......... .......... .......... .......... 72 CAGTGTTGAG TTCTCAAACT TTGTGCCATG ATCAGATCGA ATGCT 89592 | | ||||| .......... .......... .......... .....AGATA ATGCT 82 hqPGS_C08SLm0119I05.1+_SGN-E391539- (83248 83313) ******************************************************************************** EST sequence 95 +strand 661 n (File: SGN-E354195+) 1 TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 61 ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 121 ATTTCTACTT AGGCTTGTAA AGCAATAGAG AATATTGCTT GAACGTGAGA TTAAAAACTT 181 TTTCTCATAT TTGTTGTAAT CGTGTTTCAC TTTTGCTTGT GAAGATTAGT GAAAACGATT 241 GAAAATCCTG TGAGACAAGT CGTGGTTTTA CTCCCTTAAG CAAGGAGGTT TCCACGTAAA 301 ATGTTGTGTT GTTTAAACTG CATTTACTTT CTGTTCATAC TTTTTAGTGT GTCAAGTGAA 361 CTGGGTCATT GACTTATAAG TGAAGGCATT TATTCTATCA GGCACCAAGC AACACATTAG 421 AGGGAAGCAT TTTATAAAGT ATTTGTTTGT ATTTTATTTA TATTTTATCT ACTATGTTCA 481 ATTTTTAAAC TGGAGTCTAA CTGATTCACA TATTCTCCAT CGAGAAACAC ATCAGAGGGA 541 AGCACTCTAT GAAGTATTTT ATTTAATTTT TTACCTGATC TTTTCAATAT TTATATTAGA 601 GTTCAAATTA TTTAATTAGA TTTTGACAAC AAACAACATT GTCGAGGGAA GCACACTATG 661 A Predicted gene structure (within gDNA segment 86764 to 80663): Exon 1 85264 84863 ( 402 n); cDNA 1 401 ( 401 n); score: 0.815 MATCH C08SLm0119I05.1- SGN-E354195+ 0.815 402 0.608 C PGS_C08SLm0119I05.1-_SGN-E354195+ (85264 84863) Alignment (genomic DNA sequence = upper lines): TTGTTTAGGA ATGCATTCTC TTGTTCTTAA ACTGTAAACC ATTCCTGAAT CTACAAAGGA 85205 ||| |||||| || | |||| ||| ||||| | | ||||| ||||||||| ||| |||||| TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 60 ATTGGTGTGT TGTGTTAAAA GTCTAGGTTG TCCAGGTGGG ATAGCTTAGT GGGTAGATTG 85145 || ||| || ||||| ||| | || |||| || | |||| |||||||||| ||||||||| ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 120 TTTTCTACTT AGGCTTGTTA AGCAATAGTG GACTATTTCT TAACTGTAAG ATTGATAACT 85085 ||||||||| |||||||| | |||||||| || |||| || | | || || ||| | |||| ATTTCTACTT AGGCTTGTAA AGCAATAG-A GAATATTGCT TGAACGTGAG ATTAAAAACT 179 CTTTCTTACG TTTGGTGTAA TCGTGTTTTA CTTTTGCTTT TGAAGATTAG TGAAAACGAT 85025 ||||| | |||| ||||| |||||||| | ||||||||| |||||||||| |||||||||| TTTTCTCATA TTTGTTGTAA TCGTGTTTCA CTTTTGCTTG TGAAGATTAG TGAAAACGAT 239 TGAAAATCCT GTGAGACAGG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTTCACGTAA 84965 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| || ||||||| TGAAAATCCT GTGAGACAAG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTCCACGTAA 299 AATCATCGTG TTGATTTTAC TGCATTTAAC TTTCT-TT-T TATTCATTAG TGTAGTAAGG 84907 ||| | ||| ||| || || ||||||| || ||||| || || | |||| ||| ||| AAT-GTTGTG TTGTTTAAAC TGCATTT-AC TTTCTGTTCA TACTTTTTAG TGTGTCAAGT 357 GGCCTGGTCC ATT-ACTTGT TAAGTGAAGG TATATATTCT ATCAG 84863 | |||| | ||| |||| |||||||||| || |||||| ||||| GAACTGGGTC ATTGACTT-A TAAGTGAAGG CATTTATTCT ATCAG 401 hqPGS_C08SLm0119I05.1-_SGN-E354195+ (85264 84863) ******************************************************************************** EST sequence 7 -strand 501 n (File: SGN-E203362-) 1 GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGACCCTTC 61 CAACCAATGG CAAAGAAGTT TAGGAAAGTG ACTTGCCCAT ATAAAAGGCA CTTTCCTAAA 121 CACTTTTCTT CAGTTTTTGC AACTTGATAA AAACTTTTCA AGAACTCTTG CAAAGGCTCT 181 ACAAAGTAAA GGCAGAATTA TTCCAAGAAC AACAGCAATA TCTTGAGCTT TTCGTCTAGT 241 TGTTTAGGAA TATATTCTCT TGTTCTTAAA CTGTAAACCA TTCCTGAATC TATAAAGGAT 301 TTGGTGTGTT GTGTTAAAAG TCTAGGTTGT CCAGGTGGGA TAGCTTAGTG GGTAGATTGT 361 TTTCTACTTA GGCTTGTTAA GCAATAGAGG ACTATTGCTT AACGGTAAGA TTCATAACTC 421 TTTCTTACGT TTGGTGTAAT CGTGTTTTAC TTTTGCTTTT GAAGATTAGT GAAAACGATT 481 GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 86232 to 84259): Exon 1 85505 85020 ( 486 n); cDNA 1 484 ( 484 n); score: 0.939 PPA cDNA 485 501 MATCH C08SLm0119I05.1- SGN-E203362- 0.939 486 0.970 C PGS_C08SLm0119I05.1-_SGN-E203362- (85505 85020) Alignment (genomic DNA sequence = upper lines): GCTGGAGACG GTACAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGTGACTTT 85446 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| ||||| | GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA --GTGACCCT 58 TCCAGCCAAT GGCAAAGAGG TTTAGGAAAG TGACTTGCCC ATATAAAAGG CACTTTTCTA 85386 |||| ||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||| ||| TCCAACCAAT GGCAAAGAAG TTTAGGAAAG TGACTTGCCC ATATAAAAGG CACTTTCCTA 118 AACA-TTTTG TGCAACTTTT GCAACTTGAT AAAAAATTTT CAAGAACTCT TGCAAAGGCT 85327 |||| |||| | || |||| |||||||||| ||||| |||| |||||||||| |||||||||| AACACTTTTC TTCAGTTTTT GCAACTTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 178 ACTACAAAGC AAAGGCGGAA TTATTCCAAG AACAACAGCA ATATCTGGAG CTTTTTGTCT 85267 |||||||| |||||| ||| |||||||||| |||||||||| |||||| ||| ||||| |||| -CTACAAAGT AAAGGCAGAA TTATTCCAAG AACAACAGCA ATATCTTGAG CTTTTCGTCT 237 AGTTGTTTAG GAATGCATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTACAAAG 85207 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| ||||| |||| AGTTGTTTAG GAATATATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTATAAAG 297 GAATTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 85147 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 357 TGTTTTCTAC TTAGGCTTGT TAAGCAATAG TGGACTATTT CTTAACTGTA AGATTGATAA 85087 |||||||||| |||||||||| |||||||||| |||||||| |||||| ||| ||||| |||| TGTTTTCTAC TTAGGCTTGT TAAGCAATAG AGGACTATTG CTTAACGGTA AGATTCATAA 417 CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAAGATT AGTGAAAACG 85027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAAGATT AGTGAAAACG 477 ATTGAAA 85020 ||||||| ATTGAAA 484 hqPGS_C08SLm0119I05.1-_SGN-E203362- (85505 85020) ******************************************************************************** EST sequence 58 -strand 662 n (File: SGN-E546563-) 1 AACTCAAATG TTACTTTAAC TGTAAATGTT ATTTGTAGTT TTGATGATTT GACAAACAAT 61 GGGACCTCAT AAAGGTATCA GGTTCTCTAA TTGTGTATTG CAGGTGTCTT GTTTGAGGTA 121 TTGCAGAAGA AACAAAACCA GGGACCTAGT AGAGGTACCA GGCTCTCATG AAAATGAGTC 181 AGTCGACTGC CAGCTGGAGA TGGTACAGAA AGTAGGTGCA CACTTCCCGA TGGCGTCAGA 241 AAAGTGTGAC CTTTTCAGCA AATGGCAAAG GAGTTTAGGA AAGTGACTTG CCCACATAAA 301 AGGCACTTTC CAAAACATTT GTTTTTTAGT TTTTGCAACT TGATAAAAAC TTTTCAAGAA 361 CACTTGCAAA GGCTACACAA AAGGTAGAAT CATTCCAAGA ACAACAGCAA CATCTTGAGC 421 TTGTCGTATA GTTGTTTAGG AATTTATTCT CTTGTTGTTA AATTGTAAAC CACTGCTAAA 481 TCTATAAAGG AATTGGTGTG TTGTGTAAAA GTCTAGGTTG TCCAAGTGGG ATAGCTTAGT 541 GGGTAGATTG TTTTTCTACT TAGGCTTGTT GAGCAATAGA GGACTATTGT TTAACGGTAA 601 GATTGATAAC TCTTTCTTAC GTTTGGTGAA AAAAAAAAAA AAAAAAACTC GAGGGGGGCC 661 CG Predicted gene structure (within gDNA segment 87540 to 84128): Exon 1 85672 85069 ( 604 n); cDNA 24 627 ( 604 n); score: 0.863 PPA cDNA 629 648 MATCH C08SLm0119I05.1- SGN-E546563- 0.863 604 0.912 C PGS_C08SLm0119I05.1-_SGN-E546563- (85672 85069) Alignment (genomic DNA sequence = upper lines): AAATGTTATT TGTAGTATTG ATGATTAGAC AAACTTGGGA ACCTTGTAAA GGTACCAGTT 85613 |||||||||| |||||| ||| |||||| ||| |||| || |||| |||| |||| ||| | AAATGTTATT TGTAGTTTTG ATGATTTGAC AAACAATGGG ACCTCATAAA GGTATCAGGT 83 TCT-TAATTG ACTATTGCAG GGTTCTTGCT TGA-GTATTG TAGATGAAAC AAACCCAGGG 85555 ||| |||||| |||||||| | ||||| | ||| |||||| ||| ||||| ||| |||||| TCTCTAATTG TGTATTGCAG GTGTCTTGTT TGAGGTATTG CAGAAGAAAC AAAACCAGGG 143 ACCTAGTAGA GGTACCAGGC TCTCATGATG AGGAGCCAGT TGATTGCCAG CTGGAGACGG 85495 |||||||||| |||||||||| |||||||| | ||| |||| || |||||| ||||||| || ACCTAGTAGA GGTACCAGGC TCTCATGAAA ATGAGTCAGT CGACTGCCAG CTGGAGATGG 203 TACAGAAAGT AGGTGCACAC TTCCCGATGG CGTCAG-AAA GTGTGACTTT TCCAGCCAAT 85436 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||| || | |||| ||| TACAGAAAGT AGGTGCACAC TTCCCGATGG CGTCAGAAAA GTGTGACCTT TTCAGCAAAT 263 GGCAAAGAGG TTTAGGAAAG TGACTTGCCC ATATAAAAGG CACTTTTCTA AACA-TT-TT 85378 ||||||| | |||||||||| |||||||||| | |||||||| |||||| | | |||| || || GGCAAAGGAG TTTAGGAAAG TGACTTGCCC ACATAAAAGG CACTTTCCAA AACATTTGTT 323 GTGCAACTTT TGCAACTTGA TAAAAAATTT TCAAGAACTC TTGCAAAGGC TACTACAAAG 85318 | | ||| |||||||||| |||||| ||| |||||||| | |||||||||| ||| || | TTTTAGTTTT TGCAACTTGA TAAAAACTTT TCAAGAACAC TTGCAAAGGC TAC-AC--A- 379 CAAAGGCGGA ATTATTCCAA GAACAACAGC AATATCTGGA GCTTTTTGTC TAGTTGTTTA 85258 ||||| || || ||||||| |||||||||| || |||| || |||| | || |||||||||| -AAAGGTAGA ATCATTCCAA GAACAACAGC AACATCTTGA GCTTGTCGTA TAGTTGTTTA 438 GGAATGCATT CTCTTGTTCT TAAACTGTAA ACCATTCCTG AATCTACAAA GGAATTGGTG 85198 ||||| ||| |||||||| | |||| ||||| |||| | || |||||| ||| |||||||||| GGAATTTATT CTCTTGTTGT TAAATTGTAA ACCACTGCTA AATCTATAAA GGAATTGGTG 498 TGTTGTGTTA AAAGTCTAGG TTGTCCAGGT GGGATAGCTT AGTGGGTAGA TTG-TTTTCT 85139 ||||||| || |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| TGTTGTG-TA AAAGTCTAGG TTGTCCAAGT GGGATAGCTT AGTGGGTAGA TTGTTTTTCT 557 ACTTAGGCTT GTTAAGCAAT AGTGGACTAT TTCTTAACTG TAAGATTGAT AACTCTTTCT 85079 |||||||||| ||| |||||| || ||||||| | ||||| | |||||||||| |||||||||| ACTTAGGCTT GTTGAGCAAT AGAGGACTAT TGTTTAACGG TAAGATTGAT AACTCTTTCT 617 TACGTTTGGT 85069 |||||||||| TACGTTTGGT 627 hqPGS_C08SLm0119I05.1-_SGN-E546563- (85672 85069) ******************************************************************************** EST sequence 104 +strand 407 n (File: SGN-E549133+) 1 AGTGGTAAAG AGGTAGAAAT TGCTATACTC AAAGCAGAAC TGCTTACTGC ACAGAGTGAG 61 GGACCTGGTT CTTCAGTGAT TCAAGCTATG GAGAAGGAAA ATGCTGAGTT GAAGGCGAAT 121 ATCACTGCCC TGCAAGAAAA GTCCATCAAA GATAATGATG CTGCCAATGC ACGACTCACT 181 CTTGTTATCC AGTCCCTGTC TCATCCTCCC CCCTCTTCCT AGCCTATTGA ACACTTTCTT 241 TTGTGTCAAT TTTTTTTGTG GCTTATCACT GTATTGATGG ATATTCAGTT TGTTTTTAAT 301 GTATTAATGT TATGATGGCA TGCCTGTTAA TTTNAAAAAA AAAAAAAAAA AAAAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 87045 to 83485): Exon 1 86283 85954 ( 330 n); cDNA 1 332 ( 332 n); score: 0.864 PPA cDNA 357 407 MATCH C08SLm0119I05.1- SGN-E549133+ 0.864 330 0.811 C PGS_C08SLm0119I05.1-_SGN-E549133+ (86283 85954) Alignment (genomic DNA sequence = upper lines): AGTGGTAAAG AGGCAGAGAT TGCTATACTC AAAGCAGAAC TGCTTACTGC ACAAAGTGAG 86224 |||||||||| ||| ||| || |||||||||| |||||||||| |||||||||| ||| |||||| AGTGGTAAAG AGGTAGAAAT TGCTATACTC AAAGCAGAAC TGCTTACTGC ACAGAGTGAG 60 GGACCTGGTT CTTCAGTGGT TCAAGCTCTG GAGAAAGAGA ATACTAAGTT GAAGGCGAAG 86164 |||||||||| |||||||| | ||||||| || ||||| || | || || |||| ||||||||| GGACCTGGTT CTTCAGTGAT TCAAGCTATG GAGAAGGAAA ATGCTGAGTT GAAGGCGAAT 120 ATAACTGCCC TGCAAGAAAA GGCCATCAAA GACAATGATG CTGTCAATGC ACGACTCACT 86104 || ||||||| |||||||||| | |||||||| || ||||||| ||| |||||| |||||||||| ATCACTGCCC TGCAAGAAAA GTCCATCAAA GATAATGATG CTGCCAATGC ACGACTCACT 180 CTTGTTATCC AATCCCTGTC TCATCCTCCT CCCTCTTCCG AGTTTGTTGA AC-CCCCCTT 86045 |||||||||| | |||||||| ||||||||| ||||||||| || | |||| || | ||| CTTGTTATCC AGTCCCTGTC TCATCCTCCC CCCTCTTCCT AGCCTATTGA ACACTTTCTT 240 GTGT-CAAAT TTTTTTTGTG GCTTTTCAAT GTGTTGAAGA ATGTTCAGTT TGGTTCTAAT 85986 ||| ||| |||||||||| |||| ||| | || |||| | || ||||||| || || |||| TTGTGTCAAT TTTTTTTGTG GCTTATCACT GTATTGATGG ATATTCAGTT TGTTTTTAAT 300 GTATTTATGT TATTATGGCG TACTGGTTAA TT 85954 ||||| |||| ||| ||||| | | ||||| || GTATTAATGT TATGATGGCA TGCCTGTTAA TT 332 hqPGS_C08SLm0119I05.1-_SGN-E549133+ (86283 85954) ******************************************************************************** EST sequence 91 +strand 386 n (File: SGN-E309004+) 1 GTGGTAAAGA GGTAGAAATT GCTATACTCA AAGCAGAACT GCTTACTGCA CAGAGTGAGG 61 GACCTGGTTC TTCAGTGATT CAAGCTATGG AGAAGGAAAA TGCTGAGTTG AAGGCGAATA 121 TCACTGCCCT GCAAGAAAAG TCCATCAAAG ATAATGATGC TGCCAATGCA CGACTCACTC 181 TTGTTATCCA GTCCCTGTCT CATCCTCCCC CCTCTTCCTA GCCTATTGAA CACTTTCTTT 241 TGTGTCAATT TTTTTTGTGG CTTATCACTG TATTGATGGA TATTCAGTTT GTTTTTAATG 301 TATTAATGTT ATGATGGCAT GCCCTGTTAA TTTAAAAAAA AAAAAANAAA NNNAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 87035 to 83685): Exon 1 86282 85967 ( 316 n); cDNA 1 318 ( 318 n); score: 0.870 PPA cDNA 336 350 MATCH C08SLm0119I05.1- SGN-E309004+ 0.870 316 0.819 C PGS_C08SLm0119I05.1-_SGN-E309004+ (86282 85967) Alignment (genomic DNA sequence = upper lines): GTGGTAAAGA GGCAGAGATT GCTATACTCA AAGCAGAACT GCTTACTGCA CAAAGTGAGG 86223 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| || ||||||| GTGGTAAAGA GGTAGAAATT GCTATACTCA AAGCAGAACT GCTTACTGCA CAGAGTGAGG 60 GACCTGGTTC TTCAGTGGTT CAAGCTCTGG AGAAAGAGAA TACTAAGTTG AAGGCGAAGA 86163 |||||||||| ||||||| || |||||| ||| |||| || || | || ||||| |||||||| | GACCTGGTTC TTCAGTGATT CAAGCTATGG AGAAGGAAAA TGCTGAGTTG AAGGCGAATA 120 TAACTGCCCT GCAAGAAAAG GCCATCAAAG ACAATGATGC TGTCAATGCA CGACTCACTC 86103 | |||||||| |||||||||| ||||||||| | |||||||| || ||||||| |||||||||| TCACTGCCCT GCAAGAAAAG TCCATCAAAG ATAATGATGC TGCCAATGCA CGACTCACTC 180 TTGTTATCCA ATCCCTGTCT CATCCTCCTC CCTCTTCCGA GTTTGTTGAA C-CCCCCTTG 86044 |||||||||| ||||||||| |||||||| | |||||||| | | | ||||| | | ||| TTGTTATCCA GTCCCTGTCT CATCCTCCCC CCTCTTCCTA GCCTATTGAA CACTTTCTTT 240 TGT-CAAATT TTTTTTGTGG CTTTTCAATG TGTTGAAGAA TGTTCAGTTT GGTTCTAATG 85985 ||| |||| |||||||||| ||| ||| || | |||| | | | |||||||| | || ||||| TGTGTCAATT TTTTTTGTGG CTTATCACTG TATTGATGGA TATTCAGTTT GTTTTTAATG 300 TATTTATGTT ATTATGGC 85967 |||| ||||| || ||||| TATTAATGTT ATGATGGC 318 hqPGS_C08SLm0119I05.1-_SGN-E309004+ (86282 85967) ******************************************************************************** EST sequence 96 +strand 661 n (File: SGN-E354195+) 1 TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 61 ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 121 ATTTCTACTT AGGCTTGTAA AGCAATAGAG AATATTGCTT GAACGTGAGA TTAAAAACTT 181 TTTCTCATAT TTGTTGTAAT CGTGTTTCAC TTTTGCTTGT GAAGATTAGT GAAAACGATT 241 GAAAATCCTG TGAGACAAGT CGTGGTTTTA CTCCCTTAAG CAAGGAGGTT TCCACGTAAA 301 ATGTTGTGTT GTTTAAACTG CATTTACTTT CTGTTCATAC TTTTTAGTGT GTCAAGTGAA 361 CTGGGTCATT GACTTATAAG TGAAGGCATT TATTCTATCA GGCACCAAGC AACACATTAG 421 AGGGAAGCAT TTTATAAAGT ATTTGTTTGT ATTTTATTTA TATTTTATCT ACTATGTTCA 481 ATTTTTAAAC TGGAGTCTAA CTGATTCACA TATTCTCCAT CGAGAAACAC ATCAGAGGGA 541 AGCACTCTAT GAAGTATTTT ATTTAATTTT TTACCTGATC TTTTCAATAT TTATATTAGA 601 GTTCAAATTA TTTAATTAGA TTTTGACAAC AAACAACATT GTCGAGGGAA GCACACTATG 661 A Predicted gene structure (within gDNA segment 95460 to 88343): Exon 1 92845 92445 ( 401 n); cDNA 1 400 ( 400 n); score: 0.812 MATCH C08SLm0119I05.1- SGN-E354195+ 0.812 401 0.607 C PGS_C08SLm0119I05.1-_SGN-E354195+ (92845 92445) Alignment (genomic DNA sequence = upper lines): TTGTTTAGGA ATGCATTCTC TTGTTCTTAA ACTGTAAACC ATTCCTGAAT CTATAAAGGA 92786 ||| |||||| || | |||| ||| ||||| | | ||||| ||||||||| |||||||||| TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 60 ATTGGTGTGT TGTGTTAAAA GTCTAGGTTG TCCAGGTGGG ATAGCTTAGT GGGTAGATTG 92726 || ||| || ||||| ||| | || |||| || | |||| |||||||||| ||||||||| ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 120 TTTTCTATTT AGGCTTGTTA AGCAATAGTG GACTATTTCT TAACTGTAAG ATTGATAACT 92666 |||||| || |||||||| | |||||||| || |||| || | | || || ||| | |||| ATTTCTACTT AGGCTTGTAA AGCAATAG-A GAATATTGCT TGAACGTGAG ATTAAAAACT 179 CTTTCTTACG TTTGGTGTAA TCGTGTTTTA CTTTTGCTTT TGAATATTAG TGAAAACGAT 92606 ||||| | |||| ||||| |||||||| | ||||||||| |||| ||||| |||||||||| TTTTCTCATA TTTGTTGTAA TCGTGTTTCA CTTTTGCTTG TGAAGATTAG TGAAAACGAT 239 TGAAAATCCT GTAAGACAGG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTCCACGTAA 92546 |||||||||| || ||||| | |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATCCT GTGAGACAAG TCGTGGTTTT ACTCCCTTAA GCAAGGAGGT TTCCACGTAA 299 AATCATCATG TTGATTTTAC TGCATTTAAC TTTCT-TT-T TATTCATTAG TGTAGTAAGG 92488 ||| | || ||| || || ||||||| || ||||| || || | |||| ||| ||| AAT-GTTGTG TTGTTTAAAC TGCATTT-AC TTTCTGTTCA TACTTTTTAG TGTGTCAAGT 357 GACCT-GGTC TATTACTTGT TAAGTGAAGG CATATATTCT ATCA 92445 || || |||| | |||| |||||||||| ||| |||||| |||| GAACTGGGTC ATTGACTT-A TAAGTGAAGG CATTTATTCT ATCA 400 hqPGS_C08SLm0119I05.1-_SGN-E354195+ (92845 92445) ******************************************************************************** EST sequence 6 -strand 501 n (File: SGN-E203362-) 1 GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGACCCTTC 61 CAACCAATGG CAAAGAAGTT TAGGAAAGTG ACTTGCCCAT ATAAAAGGCA CTTTCCTAAA 121 CACTTTTCTT CAGTTTTTGC AACTTGATAA AAACTTTTCA AGAACTCTTG CAAAGGCTCT 181 ACAAAGTAAA GGCAGAATTA TTCCAAGAAC AACAGCAATA TCTTGAGCTT TTCGTCTAGT 241 TGTTTAGGAA TATATTCTCT TGTTCTTAAA CTGTAAACCA TTCCTGAATC TATAAAGGAT 301 TTGGTGTGTT GTGTTAAAAG TCTAGGTTGT CCAGGTGGGA TAGCTTAGTG GGTAGATTGT 361 TTTCTACTTA GGCTTGTTAA GCAATAGAGG ACTATTGCTT AACGGTAAGA TTCATAACTC 421 TTTCTTACGT TTGGTGTAAT CGTGTTTTAC TTTTGCTTTT GAAGATTAGT GAAAACGATT 481 GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 93813 to 91840): Exon 1 93086 92601 ( 486 n); cDNA 1 484 ( 484 n); score: 0.935 PPA cDNA 485 501 MATCH C08SLm0119I05.1- SGN-E203362- 0.935 486 0.970 C PGS_C08SLm0119I05.1-_SGN-E203362- (93086 92601) Alignment (genomic DNA sequence = upper lines): GCTGGAGACG GTACAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGTGACTTT 93027 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| ||||| | GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA --GTGACCCT 58 TCCAGCCAAT GACAAAGAGG TTTAGGAAAG TGACTTGCCC ATATAAAAGA CACTTTCCTA 92967 |||| ||||| | |||||| | |||||||||| |||||||||| ||||||||| |||||||||| TCCAACCAAT GGCAAAGAAG TTTAGGAAAG TGACTTGCCC ATATAAAAGG CACTTTCCTA 118 AACA-TTTTG TGCAACTTTT GCAAATTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 92908 |||| |||| | || |||| |||| ||||| |||||||||| |||||||||| |||||||||| AACACTTTTC TTCAGTTTTT GCAACTTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 178 ACTACAAAGC AAAGACAGAA TTATTCCAAG AACAACAGCA ATATCTGGAG TTTTTCGTCT 92848 |||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| ||||||||| -CTACAAAGT AAAGGCAGAA TTATTCCAAG AACAACAGCA ATATCTTGAG CTTTTCGTCT 237 AGTTGTTTAG GAATGCATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTATAAAG 92788 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTTTAG GAATATATTC TCTTGTTCTT AAACTGTAAA CCATTCCTGA ATCTATAAAG 297 GAATTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 92728 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTGGTGT GTTGTGTTAA AAGTCTAGGT TGTCCAGGTG GGATAGCTTA GTGGGTAGAT 357 TGTTTTCTAT TTAGGCTTGT TAAGCAATAG TGGACTATTT CTTAACTGTA AGATTGATAA 92668 ||||||||| |||||||||| |||||||||| |||||||| |||||| ||| ||||| |||| TGTTTTCTAC TTAGGCTTGT TAAGCAATAG AGGACTATTG CTTAACGGTA AGATTCATAA 417 CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAATATT AGTGAAAACG 92608 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAAGATT AGTGAAAACG 477 ATTGAAA 92601 ||||||| ATTGAAA 484 hqPGS_C08SLm0119I05.1-_SGN-E203362- (93086 92601) ******************************************************************************** EST sequence 57 -strand 662 n (File: SGN-E546563-) 1 AACTCAAATG TTACTTTAAC TGTAAATGTT ATTTGTAGTT TTGATGATTT GACAAACAAT 61 GGGACCTCAT AAAGGTATCA GGTTCTCTAA TTGTGTATTG CAGGTGTCTT GTTTGAGGTA 121 TTGCAGAAGA AACAAAACCA GGGACCTAGT AGAGGTACCA GGCTCTCATG AAAATGAGTC 181 AGTCGACTGC CAGCTGGAGA TGGTACAGAA AGTAGGTGCA CACTTCCCGA TGGCGTCAGA 241 AAAGTGTGAC CTTTTCAGCA AATGGCAAAG GAGTTTAGGA AAGTGACTTG CCCACATAAA 301 AGGCACTTTC CAAAACATTT GTTTTTTAGT TTTTGCAACT TGATAAAAAC TTTTCAAGAA 361 CACTTGCAAA GGCTACACAA AAGGTAGAAT CATTCCAAGA ACAACAGCAA CATCTTGAGC 421 TTGTCGTATA GTTGTTTAGG AATTTATTCT CTTGTTGTTA AATTGTAAAC CACTGCTAAA 481 TCTATAAAGG AATTGGTGTG TTGTGTAAAA GTCTAGGTTG TCCAAGTGGG ATAGCTTAGT 541 GGGTAGATTG TTTTTCTACT TAGGCTTGTT GAGCAATAGA GGACTATTGT TTAACGGTAA 601 GATTGATAAC TCTTTCTTAC GTTTGGTGAA AAAAAAAAAA AAAAAAACTC GAGGGGGGCC 661 CG Predicted gene structure (within gDNA segment 94120 to 91709): Exon 1 93268 92650 ( 619 n); cDNA 9 627 ( 619 n); score: 0.851 PPA cDNA 629 648 MATCH C08SLm0119I05.1- SGN-E546563- 0.851 619 0.935 C PGS_C08SLm0119I05.1-_SGN-E546563- (93268 92650) Alignment (genomic DNA sequence = upper lines): TGAAAACTTA TTTGAAACTG TTATTTGTAG TTTTGATGAT TTGACAAACT TGGGAACCTT 93209 || | ||| || || || |||||||||| |||||||||| ||||||||| || |||| TGTTACTTTA ACTGTAAATG TTATTTGTAG TTTTGATGAT TTGACAAACA ATGGGACCTC 68 GTAAAGGTAC CAGTTTCT-T AATTGACTAT TGTAGGGTTC TTGCTTGA-G TATTGTAGAT 93151 |||||||| ||| |||| | ||||| ||| || ||| || ||| |||| | ||||| ||| ATAAAGGTAT CAGGTTCTCT AATTGTGTAT TGCAGGTGTC TTGTTTGAGG TATTGCAGAA 128 GAAACAAATT AAGGGACCTA GTAGAGGTAC CAGGCTCTCA TGATGAGGAG TCAGTTGATT 93091 |||||||| ||||||||| |||||||||| |||||||||| ||| | ||| ||||| || | GAAACAAAAC CAGGGACCTA GTAGAGGTAC CAGGCTCTCA TGAAAATGAG TCAGTCGACT 188 GCCAGCTGGA GACGGTACAG AAAGTAGGTG CACACTTCCC GATGGCGTCA G-AAAGTGTG 93032 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| | |||||||| GCCAGCTGGA GATGGTACAG AAAGTAGGTG CACACTTCCC GATGGCGTCA GAAAAGTGTG 248 ACTTTTCCAG CCAATGACAA AGAGGTTTAG GAAAGTGACT TGCCCATATA AAAGACACTT 92972 || ||| ||| | |||| ||| || |||||| |||||||||| |||||| ||| |||| ||||| ACCTTTTCAG CAAATGGCAA AGGAGTTTAG GAAAGTGACT TGCCCACATA AAAGGCACTT 308 TCCTAAACA- TT-TTGTGCA ACTTTTGCAA ATTGATAAAA ACTTTTCAAG AACTCTTGCA 92914 ||| ||||| || || | | |||||||| ||||||||| |||||||||| ||| |||||| TCCAAAACAT TTGTTTTTTA GTTTTTGCAA CTTGATAAAA ACTTTTCAAG AACACTTGCA 368 AAGGCTACTA CAAAGCAAAG ACAGAATTAT TCCAAGAACA ACAGCAATAT CTGGAGTTTT 92854 |||||||| | | | |||| ||||| || |||||||||| ||||||| || || ||| || AAGGCTAC-A C--A--AAAG GTAGAATCAT TCCAAGAACA ACAGCAACAT CTTGAGCTTG 423 TCGTCTAGTT GTTTAGGAAT GCATTCTCTT GTTCTTAAAC TGTAAACCAT TCCTGAATCT 92794 |||| ||||| |||||||||| |||||||| ||| ||||| ||||||||| | || ||||| TCGTATAGTT GTTTAGGAAT TTATTCTCTT GTTGTTAAAT TGTAAACCAC TGCTAAATCT 483 ATAAAGGAAT TGGTGTGTTG TGTTAAAAGT CTAGGTTGTC CAGGTGGGAT AGCTTAGTGG 92734 |||||||||| |||||||||| || ||||||| |||||||||| || ||||||| |||||||||| ATAAAGGAAT TGGTGTGTTG TG-TAAAAGT CTAGGTTGTC CAAGTGGGAT AGCTTAGTGG 542 GTAGATTG-T TTTCTATTTA GGCTTGTTAA GCAATAGTGG ACTATTTCTT AACTGTAAGA 92675 |||||||| | |||||| ||| |||||||| | ||||||| || |||||| || ||| |||||| GTAGATTGTT TTTCTACTTA GGCTTGTTGA GCAATAGAGG ACTATTGTTT AACGGTAAGA 602 TTGATAACTC TTTCTTACGT TTGGT 92650 |||||||||| |||||||||| ||||| TTGATAACTC TTTCTTACGT TTGGT 627 hqPGS_C08SLm0119I05.1-_SGN-E546563- (93268 92650) Total number of EST alignments reported: 107 ________________________________________________________________________________ Predicted gene locations (16) in segment 1 to 100127: PGL 1 (+ strand): 680 1407 AGS-1 (680 1407) SCR (e 0.696) Exon 1 680 1407 ( 728 n); score: 0.696 PGS (680 1407) SGN-E351546+ PGS (680 1340) SGN-E356696+ PGS (680 1269) SGN-E356206+ PGS (765 1037) SGN-E345139+ PGS (827 1406) SGN-E392027- 3-phase translation of AGS-1 (+strand): . . . . . . 680 TTGACCGATGATACTTACTCAGTACATGTTTCCTCGTACTGAGCCCTACTTGTTTTCTTC L T D D T Y S V H V S S Y - A L L V F F - P M I L T Q Y M F P R T E P Y L F S S D R - Y L L S T C F L V L S P T C F L . . . . . . 740 TTTGTTTTCCTTTTATGAAATGCAGCGATTGTACCTATGACTTCTGATTTTCCTCAGCTC F V F L L - N A A I V P M T S D F P Q L L F S F Y E M Q R L Y L - L L I F L S S L C F P F M K C S D C T Y D F - F S S A . . . . . . 800 TAGCCAGCCTCCCGCATATCAAGTTACAGGGTGAGCTATCCATTCAAGCTCGTATTGGAG - P A S R I S S Y R V S Y P F K L V L E S Q P P A Y Q V T G - A I H S S S Y W S L A S L P H I K L Q G E L S I Q A R I G . . . . . . 860 TCTCTCGGTCATGACATGATGTCCTATACTTTCGGACACATACCATTTTATTCTTTATTT S L G H D M M S Y T F G H I P F Y S L F L S V M T - C P I L S D T Y H F I L Y F V S R S - H D V L Y F R T H T I L F F I . . . . . . 920 TAGTGTATTCGATATTCTTAGACTTAGTATTGGAGATTAGATGTCCTTGATGTGATGACT - C I R Y S - T - Y W R L D V L D V M T S V F D I L R L S I G D - M S L M - - L L V Y S I F L D L V L E I R C P - C D D . . . . . . 980 ATCAGATTTTGGGATGATAAGTATTAAACTTTAGAAACTTATTTAAATTGGTTGCTTAGT I R F W D D K Y - T L E T Y L N W L L S S D F G M I S I K L - K L I - I G C L V Y Q I L G - - V L N F R N L F K L V A - . . . . . . 1040 ATCTTTTGAAGCTTCCACATTATTGATATTATTTATAGTTGAACTATTGATACATGTTGG I F - S F H I I D I I Y S - T I D T C W S F E A S T L L I L F I V E L L I H V G Y L L K L P H Y - Y Y L - L N Y - Y M L . . . . . . 1100 GGTTTAGATGTGTTGGTTCGCCCACTTAAGGAGGTAAGTGTGGGTGCCACTCACGAATCA G L D V L V R P L K E V S V G A T H E S V - M C W F A H L R R - V W V P L T N H G F R C V G S P T - G G K C G C H S R I . . . . . . 1160 TTTTGGGTCGTGACAAACTTGGTATCAGAGCGTTAGGTTTGTTGATCTCATCACACAAGA F W V V T N L V S E R - V C - S H H T R F G S - Q T W Y Q S V R F V D L I T Q E I L G R D K L G I R A L G L L I S S H K . . . . . . 1220 ACAAGTCTAGTAGAGTCTTGCGGAATGGTAAGGGGACGCCTTTACTTTTCTTCGAGAAGC T S L V E S C G M V R G R L Y F S S R S Q V - - S L A E W - G D A F T F L R E A N K S S R V L R N G K G T P L L F F E K . . . . . . 1280 TATAGGACTTTAGGAAAGCTCATTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATT Y R T L G K L I S F F L S C Y Y L N P I I G L - E S S F L S F F R A T T - I Q L L - D F R K A H F F L S F V L L L E S N . . . . . . 1340 GGTATATAGGTGATACAAATTGGTATCTGAACTTCTTCACTCTATTTCAAATATGGGTAA G I - V I Q I G I - T S S L Y F K Y G - V Y R - Y K L V S E L L H S I S N M G N W Y I G D T N W Y L N F F T L F Q I W V . 1400 TACTAGAG Y - T R I L E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 1407 CTCTAGTATTACCCATATTTGAAATAGAGTGAAGAAGTTCAGATACCAATTTGTATCACC L - Y Y P Y L K - S E E V Q I P I C I T S S I T H I - N R V K K F R Y Q F V S P L V L P I F E I E - R S S D T N L Y H . . . . . . 1347 TATATACCAATTGGATTCAAGTAGTAGCACGAAAGAAAGAAAGAAATGAGCTTTCCTAAA Y I P I G F K - - H E R K K E M S F P K I Y Q L D S S S S T K E R K K - A F L K L Y T N W I Q V V A R K K E R N E L S - . . . . . . 1287 GTCCTATAGCTTCTCGAAGAAAAGTAAAGGCGTCCCCTTACCATTCCGCAAGACTCTACT V L - L L E E K - R R P L T I P Q D S T S Y S F S K K S K G V P L P F R K T L L S P I A S R R K V K A S P Y H S A R L Y . . . . . . 1227 AGACTTGTTCTTGTGTGATGAGATCAACAAACCTAACGCTCTGATACCAAGTTTGTCACG R L V L V - - D Q Q T - R S D T K F V T D L F L C D E I N K P N A L I P S L S R - T C S C V M R S T N L T L - Y Q V C H . . . . . . 1167 ACCCAAAATGATTCGTGAGTGGCACCCACACTTACCTCCTTAAGTGGGCGAACCAACACA T Q N D S - V A P T L T S L S G R T N T P K M I R E W H P H L P P - V G E P T H D P K - F V S G T H T Y L L K W A N Q H . . . . . . 1107 TCTAAACCCCAACATGTATCAATAGTTCAACTATAAATAATATCAATAATGTGGAAGCTT S K P Q H V S I V Q L - I I S I M W K L L N P N M Y Q - F N Y K - Y Q - C G S F I - T P T C I N S S T I N N I N N V E A . . . . . . 1047 CAAAAGATACTAAGCAACCAATTTAAATAAGTTTCTAAAGTTTAATACTTATCATCCCAA Q K I L S N Q F K - V S K V - Y L S S Q K R Y - A T N L N K F L K F N T Y H P K S K D T K Q P I - I S F - S L I L I I P . . . . . . 987 AATCTGATAGTCATCACATCAAGGACATCTAATCTCCAATACTAAGTCTAAGAATATCGA N L I V I T S R T S N L Q Y - V - E Y R I - - S S H Q G H L I S N T K S K N I E K S D S H H I K D I - S P I L S L R I S . . . . . . 927 ATACACTAAAATAAAGAATAAAATGGTATGTGTCCGAAAGTATAGGACATCATGTCATGA I H - N K E - N G M C P K V - D I M S - Y T K I K N K M V C V R K Y R T S C H D N T L K - R I K W Y V S E S I G H H V M . . . . . . 867 CCGAGAGACTCCAATACGAGCTTGAATGGATAGCTCACCCTGTAACTTGATATGCGGGAG P R D S N T S L N G - L T L - L D M R E R E T P I R A - M D S S P C N L I C G R T E R L Q Y E L E W I A H P V T - Y A G . . . . . . 807 GCTGGCTAGAGCTGAGGAAAATCAGAAGTCATAGGTACAATCGCTGCATTTCATAAAAGG A G - S - G K S E V I G T I A A F H K R L A R A E E N Q K S - V Q S L H F I K G G W L E L R K I R S H R Y N R C I S - K . . . . . . 747 AAAACAAAGAAGAAAACAAGTAGGGCTCAGTACGAGGAAACATGTACTGAGTAAGTATCA K T K K K T S R A Q Y E E T C T E - V S K Q R R K Q V G L S T R K H V L S K Y H E N K E E N K - G S V R G N M Y - V S I . 687 TCGGTCAA S V R S I G Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 6505 6777 AGS-1 (6505 6777) SCR (e 0.949) Exon 1 6505 6777 ( 273 n); score: 0.949 PGS (6505 6777) SGN-E345139+ 3-phase translation of AGS-1 (+strand): . . . . . . 6505 CGATTATACCTATGACTTCTGATTTCCCTCAGCTCTAGCCAGCCTCCCGCATATCAAGTT R L Y L - L L I S L S S S Q P P A Y Q V D Y T Y D F - F P S A L A S L P H I K L I I P M T S D F P Q L - P A S R I S S . . . . . . 6565 ACAAGGTGAGCTATCCATTCAAGCTCGTGTTGGATTCTCTCGGTCATGACATGATGTCCT T R - A I H S S S C W I L S V M T - C P Q G E L S I Q A R V G F S R S - H D V L Y K V S Y P F K L V L D S L G H D M M S . . . . . . 6625 ATACTTTCGGACACATACCATTTTATTCTTTATTTTAGTGTATTCGATATTCTTAGACTT I L S D T Y H F I L Y F S V F D I L R L Y F R T H T I L F F I L V Y S I F L D L Y T F G H I P F Y S L F - C I R Y S - T . . . . . . 6685 AGTATTGAATATTAGATGTCCTTGATGTGATGACTATCAGATTTTGGGATGATAAGTATT S I E Y - M S L M - - L S D F G M I S I V L N I R C P - C D D Y Q I L G - - V L - Y - I L D V L D V M T I R F W D D K Y . . . . 6745 AAACTTTAGAAACTTATTTAAATTGGTTGCTTA K L - K L I - I G C L N F R N L F K L V A - T L E T Y L N W L L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 6777 TAAGCAACCAATTTAAATAAGTTTCTAAAGTTTAATACTTATCATCCCAAAATCTGATAG - A T N L N K F L K F N T Y H P K I - - K Q P I - I S F - S L I L I I P K S D S S N Q F K - V S K V - Y L S S Q N L I . . . . . . 6717 TCATCACATCAAGGACATCTAATATTCAATACTAAGTCTAAGAATATCGAATACACTAAA S S H Q G H L I F N T K S K N I E Y T K H H I K D I - Y S I L S L R I S N T L K V I T S R T S N I Q Y - V - E Y R I H - . . . . . . 6657 ATAAAGAATAAAATGGTATGTGTCCGAAAGTATAGGACATCATGTCATGACCGAGAGAAT I K N K M V C V R K Y R T S C H D R E N - R I K W Y V S E S I G H H V M T E R I N K E - N G M C P K V - D I M S - P R E . . . . . . 6597 CCAACACGAGCTTGAATGGATAGCTCACCTTGTAACTTGATATGCGGGAGGCTGGCTAGA P T R A - M D S S P C N L I C G R L A R Q H E L E W I A H L V T - Y A G G W L E S N T S L N G - L T L - L D M R E A G - . . . . 6537 GCTGAGGGAAATCAGAAGTCATAGGTATAATCG A E G N Q K S - V - S L R E I R S H R Y N S - G K S E V I G I I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 8857 9654 AGS-1 (8857 9326,9455 9654) SCR (e 0.794 d 0.000 a 0.000,e 0.805) Exon 1 8857 9326 ( 470 n); score: 0.794 Intron 1 9327 9454 ( 128 n); Pd: 0.000 Pa: 0.000 Exon 2 9455 9654 ( 200 n); score: 0.805 PGS (8857 9326,9455 9654) SGN-E352005+ 3-phase translation of AGS-1 (+strand): . . . . . . 8857 TGTAGACACACAAATTTTATTGGATTTAATTTATATAAAATTTGGATTAAATCCATGTAG C R H T N F I G F N L Y K I W I K S M - V D T Q I L L D L I Y I K F G L N P C R - T H K F Y W I - F I - N L D - I H V . . . . . . 8917 ATTTGGGTTGAATGATTAATTTGAGCTTTACAAATAAATAAGTCAATGTCTATTAAATTC I W V E - L I - A L Q I N K S M S I K F F G L N D - F E L Y K - I S Q C L L N S D L G - M I N L S F T N K - V N V Y - I . . . . . . 8977 AAGTCCAAGGTCCATTTTCACCTTGAAGCCAAACTCATGCCACGTGTCACAGTGACTAGA K S K V H F H L E A K L M P R V T V T R S P R S I F T L K P N S C H V S Q - L D Q V Q G P F S P - S Q T H A T C H S D - . . . . . . 9037 CATCAAAGACCTACAAGGTGACGCCACGTGTCCGAATGTGGTGGTATCACCAATCAAATG H Q R P T R - R H V S E C G G I T N Q M I K D L Q G D A T C P N V V V S P I K - T S K T Y K V T P R V R M W W Y H Q S N . . . . . . 9097 ATAGAAGGAATCACAATGCGCCAAGTGTCAAAATGACATCCTTTGGCCAATCACAAGCAA I E G I T M R Q V S K - H P L A N H K Q - K E S Q C A K C Q N D I L W P I T S N D R R N H N A P S V K M T S F G Q S Q A . . . . . . 9157 CCTTGTCCACCCCTACAACTATAAATAGGGGATGAATATGACATTCAAAGTCATGAACAA P C P P L Q L - I G D E Y D I Q S H E Q L V H P Y N Y K - G M N M T F K V M N K T L S T P T T I N R G - I - H S K S - T . . . . . . 9217 AACACTTCAACAAGCATTTTGCAATTGGAGAAAGATACAACATCAACTACATATCTCTTC N T S T S I L Q L E K D T T S T T Y L F T L Q Q A F C N W R K I Q H Q L H I S S K H F N K H F A I G E R Y N I N Y I S L . . . . . : . 9277 GAAGGAGTGATCAACAGAGCTCTTCCTGGAGATCGACTTGCAGCGACGAA : GTGCTTTTCG E G V I N R A L P G D R L A A T K : C F S K E - S T E L F L E I D L Q R R : S A F R R R S D Q Q S S S W R S T C S D E : V L F . . . . . . 9465 ACGTTCCTAGAGATCAAATACATCTCAAGGAGGTCTACATCATCCTATATTTAAGAAATA T F L E I K Y I S R R S T S S Y I - E I R S - R S N T S Q G G L H H P I F K K Y D V P R D Q I H L K E V Y I I L Y L R N . . . . . . 9525 CACTACTGAAGGCCCTCAAATTATGGAGAAACTTAGGAGAGAAGAATCAAGAGAACAATA H Y - R P S N Y G E T - E R R I K R T I T T E G P Q I M E K L R R E E S R E Q - T L L K A L K L W R N L G E K N Q E N N . . . . . . 9585 GAATTGTACTCACACGATTCATTAATAAAATCTGTCTTTTCTATTATTTGTTTTGCTTGC E L Y S H D S L I K S V F S I I C F A C N C T H T I H - - N L S F L L F V L L A R I V L T R F I N K I C L F Y Y L F C L . 9645 AGTTAATTTT S - F V N F Q L I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-3_AGS-1_PPS_1 (9213 9326,9455 9652) (frame '0'; 312 bp, 104 residues) 1 TKHFNKHFAI GERYNINYIS LRRSDQQSSS WRSTCSDEVL FDVPRDQIHL KEVYIILYLR 61 NTLLKALKLW RNLGEKNQEN NRIVLTRFIN KICLFYYLFC LQLI PGL 4 (- strand): 31795 24656 AGS-1 (24953 24872,24788 24656) SCR (e 0.915 d 0.000 a 0.000,e 0.886) Exon 1 24953 24872 ( 82 n); score: 0.915 Intron 1 24871 24789 ( 83 n); Pd: 0.000 Pa: 0.000 Exon 2 24788 24656 ( 133 n); score: 0.886 PGS (24953 24872,24788 24656) SGN-E226388- PGS (24953 24872,24788 24656) SGN-E226486- PGS (24953 24872,24788 24656) SGN-E224375- PGS (24953 24872,24788 24684) SGN-E224875- 3-phase translation of AGS-1 (-strand): . . . . . . 24953 AAAATAAAGGATAAAAATATATGTGGTGAGTGGGGATTGAATCCACAACCTCTTGAATAG K I K D K N I C G E W G L N P Q P L E - K - R I K I Y V V S G D - I H N L L N R N K G - K Y M W - V G I E S T T S - I . . . : . . . 24893 ATGAGAGAGCTAGGAGAAAAAA : AAATGTGGTGAGTGGGGATTGAACCCACAACCTCTTGA M R E L G E K : K M W - V G I E P T T S - - E S - E K K : K C G E W G L N P Q P L E D E R A R R K K : N V V S G D - T H N L L . . . . . . 24750 AGAGATGAGAGACTTAGGAGAAAAATAAATGTGGTGATTGGGGATTGAACCCACAACCTC R D E R L R R K I N V V I G D - T H N L E M R D L G E K - M W - L G I E P T T S K R - E T - E K N K C G D W G L N P Q P . . . . 24690 TTGGATAGGTGAGAAAGTTAATAGATAAATTAAAA L D R - E S - - I N - W I G E K V N R - I K L G - V R K L I D K L K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (31795 31768,30152 30127,26780 26757,26235 26224,26048 26044,25282 25277,25002 24722) SCR (e 0.750 d 0.000 a 0.000,e 0.615 d 0.900 a 0.000,e 0.750 d 0.129 a 0.000,e 0.750 d 0.993 a 0.881,e 0.800 d 0.000 a 0.998,e 1.000 d 0.000 a 0.000,e 0.790) Exon 1 31795 31768 ( 28 n); score: 0.750 Intron 1 31767 30153 (1615 n); Pd: 0.000 Pa: 0.000 Exon 2 30152 30127 ( 26 n); score: 0.615 Intron 2 30126 26781 (3346 n); Pd: 0.900 Pa: 0.000 Exon 3 26780 26757 ( 24 n); score: 0.750 Intron 3 26756 26236 ( 521 n); Pd: 0.129 Pa: 0.000 Exon 4 26235 26224 ( 12 n); score: 0.750 Intron 4 26223 26049 ( 175 n); Pd: 0.993 Pa: 0.881 Exon 5 26048 26044 ( 5 n); score: 0.800 Intron 5 26043 25283 ( 761 n); Pd: 0.000 Pa: 0.998 Exon 6 25282 25277 ( 6 n); score: 1.000 Intron 6 25276 25003 ( 274 n); Pd: 0.000 Pa: 0.000 Exon 7 25002 24722 ( 281 n); score: 0.790 PGS (31795 31768,30152 30127,26780 26757,26235 26224,26048 26044,25282 25277,25002 24722) SGN-E548992- 3-phase translation of AGS-2 (-strand): . . . : . . . : 31795 AAAATGGTGTAAAAGAAGTGAGGTGCTG : AAGGTTTAAACTTGTTTCATCATCAA : TTTTAG K M V - K K - G A : E G L N L F H H Q : F - K W C K R S E V L : K V - T C F I I N : F R N G V K E V R C - : R F K L V S S S : I L . . : . : . : . : . 26774 AAACTAATCAAAATAGAA : AAGAGAAAAAAG : GCAAT : GTGGAG : AGTGGGGATTGAATCCATA K L I K I E : K R K K : A M : W R : V G I E S I N - S K - K : R E K R : Q : C G : E W G L N P - E T N Q N R : K E K K : G N : V E : S G D - I H . . . . . . 24983 ACCTCTTGAATGGATGCGAGAGTTAGGAGAAAAATAAAGGATAAAAATATATGTGGTGAG T S - M D A R V R R K I K D K N I C G E P L E W M R E L G E K - R I K I Y V V S N L L N G C E S - E K N K G - K Y M W - . . . . . . 24923 TGGGGATTGAATCCACAACCTCTTGAATAGATGAGAGAGCTAGGAGAAAAAATAAATTAA W G L N P Q P L E - M R E L G E K I N - G D - I H N L L N R - E S - E K K - I N V G I E S T T S - I D E R A R R K N K L . . . . . . 24863 TGTGGTGAGTGGGGATTGAACCCACAACCTCTTGAATAGATGAGAGAGTTAGGAGAAAAA C G E W G L N P Q P L E - M R E L G E K V V S G D - T H N L L N R - E S - E K K M W - V G I E P T T S - I D E R V R R K . . . . . . 24803 ATAAAGAAGAAAAATAAATGTGGTGAGTGGGGATTGAACCCACAACCTCTTGAAGAGATG I K K K N K C G E W G L N P Q P L E E M - R R K I N V V S G D - T H N L L K R - N K E E K - M W - V G I E P T T S - R D . . . 24743 AGAGACTTAGGAGAAAAATAAA R D L G E K - E T - E K N K E R L R R K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 35657 37553 AGS-1 (35657 36006,36717 36985,37114 37206,37292 37362,37515 37526) SCR (e 0.980 d 1.000 a 0.968,e 1.000 d 0.977 a 0.996,e 1.000 d 0.981 a 0.934,e 0.958 d 0.000 a 0.997,e 0.917) Exon 1 35657 36006 ( 350 n); score: 0.980 Intron 1 36007 36716 ( 710 n); Pd: 1.000 Pa: 0.968 Exon 2 36717 36985 ( 269 n); score: 1.000 Intron 2 36986 37113 ( 128 n); Pd: 0.977 Pa: 0.996 Exon 3 37114 37206 ( 93 n); score: 1.000 Intron 3 37207 37291 ( 85 n); Pd: 0.981 Pa: 0.934 Exon 4 37292 37362 ( 71 n); score: 0.958 Intron 4 37363 37514 ( 152 n); Pd: 0.000 Pa: 0.997 Exon 5 37515 37526 ( 12 n); score: 0.917 PGS (35657 36006,36717 36985,37114 37206,37292 37362,37515 37526) SGN-E549581+ PGS (35705 36006,36717 36985,37114 37206,37292 37310) SGN-E333197+ PGS (35722 36006,36717 36907) SGN-E306202+ 3-phase translation of AGS-1 (+strand): . . . . . . 35657 GAGCTCTTTTCTCCCCCAATTTTCTCTAATCTCAAAACTCTATACTCTACTTCTCATCAG E L F S P P I F S N L K T L Y S T S H Q S S F L P Q F S L I S K L Y T L L L I R A L F S P N F L - S Q N S I L Y F S S . . . . . . 35717 ATTCCCCACACAACAACAATGGCGGAAGAGGACGTTCATTACGCATCAAAGGTTGGAACC I P H T T T M A E E D V H Y A S K V G T F P T Q Q Q W R K R T F I T H Q R L E P D S P H N N N G G R G R S L R I K G W N . . . . . . 35777 AATAAGAGGAAGTACAAGGAAGAACAAACCATTTCCCGTAGACCCACTGGATTCTCTGCC N K R K Y K E E Q T I S R R P T G F S A I R G S T R K N K P F P V D P L D S L P Q - E E V Q G R T N H F P - T H W I L C . . . . . . 35837 ATGATTTCTTCCTAATCACCTGATGCTTCTTACAAAACCGTTCCCAATGCCTATGGATGA M I S S - S P D A S Y K T V P N A Y G - - F L P N H L M L L T K P F P M P M D D H D F F L I T - C F L Q N R S Q C L W M . . . . . . 35897 TTTCCAGCTTGCTAAGCAGAAGGATCAGGAAATTGCCGCTAGGCTATTGAACACCGCGGA F P A C - A E G S G N C R - A I E H R G F Q L A K Q K D Q E I A A R L L N T A E I S S L L S R R I R K L P L G Y - T P R . . . . . : . 35957 GCCCAAAAAAGCTTGAATAGATAACGGCTCTGGTTTTGATTCTGACGAAT : AAAAACCCAT A Q K S L N R - R L W F - F - R I : K T H P K K A - I D N G S G F D S D E : - K P I S P K K L E - I T A L V L I L T N : K N P . . . . . . 36727 TGTTAATTCAACTGTGACAAATTCATATGGTTATCCGGTGCCAAGCAAGAAGATTGAGGT C - F N C D K F I W L S G A K Q E D - G V N S T V T N S Y G Y P V P S K K I E V L L I Q L - Q I H M V I R C Q A R R L R . . . . . . 36787 ACCAAATGCCAGAGTTGGAGTGATCATAGGCAGAGGCGGGGAGACAATCAAGTATCTTCA T K C Q S W S D H R Q R R G D N Q V S S P N A R V G V I I G R G G E T I K Y L Q Y Q M P E L E - S - A E A G R Q S S I F . . . . . . 36847 ACTACAGTCTGGAGCCAAGATTCAGGTTACTCGAGACATGGATTCTGATCCAAATTCTCG T T V W S Q D S G Y S R H G F - S K F S L Q S G A K I Q V T R D M D S D P N S R N Y S L E P R F R L L E T W I L I Q I L . . . . . . 36907 TACTAGAGGGGTTGAACTCGTGGGTACACCAGAGCAAATTTCTAAGGCTGAATAATTAAT Y - R G - T R G Y T R A N F - G - I I N T R G V E L V G T P E Q I S K A E - L I V L E G L N S W V H Q S K F L R L N N - . . : . . . . 36967 TAGTGACGTTCTTTGTGAG : GCTGATGCAGAAGGCTCAGGCATAGTTTCCCGGAGGATGAC - - R S L - : G - C R R L R H S F P E D D S D V L C E : A D A E G S G I V S R R M T L V T F F V R : L M Q K A Q A - F P G G - . . . . . . : 37155 TGGACAGGTTGCTGGGGTAGAACATTTTGTAATAAAAGTCGCCAATAACAAG : GTTGGTCT W T G C W G R T F C N K S R Q - Q : G W S G Q V A G V E H F V I K V A N N K : V G L L D R L L G - N I L - - K S P I T R : L V . . . . . . 37300 TATTATTTGCAAAGGAGGTGAAACCATAAAAATATGCAAGAAAAGACTAGAGCGCGTATT Y Y L Q R R - N H K N M Q E K T R A R I I I C K G G E T I K I C K K R L E R V F L L F A K E V K P - K Y A R K D - S A Y . : . 37360 CAT : GTGATTCCTCTA H : V I P L M : - F L S : C D S S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-5_AGS-1_PPS_1 (36719 36961) (frame '2'; 240 bp, 80 residues) 1 KPIVNSTVTN SYGYPVPSKK IEVPNARVGV IIGRGGETIK YLQLQSGAKI QVTRDMDSDP 61 NSRTRGVELV GTPEQISKAE - >C08SLm0119I05.1+_PGL-5_AGS-1_PPS_2 (35657 35851) (frame '1'; 192 bp, 64 residues) 1 ELFSPPIFSN LKTLYSTSHQ IPHTTTMAEE DVHYASKVGT NKRKYKEEQT ISRRPTGFSA 61 MISS- AGS-2 (35721 36006,36717 36985,37114 37206,37292 37429,37515 37553) SCR (e 1.000 d 1.000 a 0.968,e 1.000 d 0.977 a 0.996,e 1.000 d 0.981 a 0.934,e 0.970 d 0.792 a 0.997,e 0.897) Exon 1 35721 36006 ( 286 n); score: 1.000 Intron 1 36007 36716 ( 710 n); Pd: 1.000 Pa: 0.968 Exon 2 36717 36985 ( 269 n); score: 1.000 Intron 2 36986 37113 ( 128 n); Pd: 0.977 Pa: 0.996 Exon 3 37114 37206 ( 93 n); score: 1.000 Intron 3 37207 37291 ( 85 n); Pd: 0.981 Pa: 0.934 Exon 4 37292 37429 ( 138 n); score: 0.970 Intron 4 37430 37514 ( 85 n); Pd: 0.792 Pa: 0.997 Exon 5 37515 37553 ( 39 n); score: 0.897 PGS (35721 36006,36717 36985,37114 37206,37292 37429,37515 37553) SGN-E544327+ PGS (35721 36006,36717 36985,37114 37206,37292 37424) SGN-E544334+ 3-phase translation of AGS-2 (+strand): . . . . . . 35721 CCCACACAACAACAATGGCGGAAGAGGACGTTCATTACGCATCAAAGGTTGGAACCAATA P T Q Q Q W R K R T F I T H Q R L E P I P H N N N G G R G R S L R I K G W N Q - H T T T M A E E D V H Y A S K V G T N . . . . . . 35781 AGAGGAAGTACAAGGAAGAACAAACCATTTCCCGTAGACCCACTGGATTCTCTGCCATGA R G S T R K N K P F P V D P L D S L P - E E V Q G R T N H F P - T H W I L C H D K R K Y K E E Q T I S R R P T G F S A M . . . . . . 35841 TTTCTTCCTAATCACCTGATGCTTCTTACAAAACCGTTCCCAATGCCTATGGATGATTTC F L P N H L M L L T K P F P M P M D D F F F L I T - C F L Q N R S Q C L W M I S I S S - S P D A S Y K T V P N A Y G - F . . . . . . 35901 CAGCTTGCTAAGCAGAAGGATCAGGAAATTGCCGCTAGGCTATTGAACACCGCGGAGCCC Q L A K Q K D Q E I A A R L L N T A E P S L L S R R I R K L P L G Y - T P R S P P A C - A E G S G N C R - A I E H R G A . . . . . : . 35961 AAAAAAGCTTGAATAGATAACGGCTCTGGTTTTGATTCTGACGAAT : AAAAACCCATTGTT K K A - I D N G S G F D S D E : - K P I V K K L E - I T A L V L I L T N : K N P L L Q K S L N R - R L W F - F - R I : K T H C . . . . . . 36731 AATTCAACTGTGACAAATTCATATGGTTATCCGGTGCCAAGCAAGAAGATTGAGGTACCA N S T V T N S Y G Y P V P S K K I E V P I Q L - Q I H M V I R C Q A R R L R Y Q - F N C D K F I W L S G A K Q E D - G T . . . . . . 36791 AATGCCAGAGTTGGAGTGATCATAGGCAGAGGCGGGGAGACAATCAAGTATCTTCAACTA N A R V G V I I G R G G E T I K Y L Q L M P E L E - S - A E A G R Q S S I F N Y K C Q S W S D H R Q R R G D N Q V S S T . . . . . . 36851 CAGTCTGGAGCCAAGATTCAGGTTACTCGAGACATGGATTCTGATCCAAATTCTCGTACT Q S G A K I Q V T R D M D S D P N S R T S L E P R F R L L E T W I L I Q I L V L T V W S Q D S G Y S R H G F - S K F S Y . . . . . . 36911 AGAGGGGTTGAACTCGTGGGTACACCAGAGCAAATTTCTAAGGCTGAATAATTAATTAGT R G V E L V G T P E Q I S K A E - L I S E G L N S W V H Q S K F L R L N N - L V - R G - T R G Y T R A N F - G - I I N - . . : . . . . 36971 GACGTTCTTTGTGAG : GCTGATGCAGAAGGCTCAGGCATAGTTTCCCGGAGGATGACTGGA D V L C E : A D A E G S G I V S R R M T G T F F V R : L M Q K A Q A - F P G G - L D - R S L - : G - C R R L R H S F P E D D W . . . . . : . 37159 CAGGTTGCTGGGGTAGAACATTTTGTAATAAAAGTCGCCAATAACAAG : GTTGGTCTTATT Q V A G V E H F V I K V A N N K : V G L I R L L G - N I L - - K S P I T R : L V L L T G C W G R T F C N K S R Q - Q : G W S Y . . . . . . 37304 ATTTGCAAAGGAGGTGAAACCATAAAAATATGCAAGAAAAGACTAGAGCGCGTATTCATG I C K G G E T I K I C K K R L E R V F M F A K E V K P - K Y A R K D - S A Y S C Y L Q R R - N H K N M Q E K T R A R I H . . . . . . 37364 TAATAATAAAATCTTCTGCAGTTAGTGTTGCAACTTTCGCCATGGTAGCGATTCCCTTTT - - - N L L Q L V L Q L S P W - R F P F N N K I F C S - C C N F R H G S D S L L V I I K S S A V S V A T F A M V A I P F . : . . . . 37424 GTCAAG : GTGATTCCTCTACACTTGCCTCCAGGTGATACATCAACA V K : V I P L H L P P G D T S T S R : - F L Y T C L Q V I H Q C Q : G D S S T L A S R - Y I N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-5_AGS-2_PPS_1 (36719 36961) (frame '1'; 240 bp, 80 residues) 1 KPIVNSTVTN SYGYPVPSKK IEVPNARVGV IIGRGGETIK YLQLQSGAKI QVTRDMDSDP 61 NSRTRGVELV GTPEQISKAE - PGL 6 (+ strand): 38081 39945 AGS-1 (38081 39945) SCR (e 1.000) Exon 1 38081 39945 (1865 n); score: 1.000 PGS (38081 38595) SGN-E538969+ PGS (38082 38603) SGN-E278014+ PGS (38525 38770) SGN-E340855+ PGS (38596 39191) SGN-E244337+ PGS (38768 39284) SGN-E331195+ PGS (39272 39945) SGN-E549024- PGS (39331 39943) SGN-E544333- PGS (39430 39945) SGN-E547714- PGS (39491 39945) SGN-E548143- 3-phase translation of AGS-1 (+strand): . . . . . . 38081 TTCATTTCAAATTATCCATGTATGAAGTAGATGAACGCCCGCTCTTCTTTACTTTTGCGG F I S N Y P C M K - M N A R S S L L L R S F Q I I H V - S R - T P A L L Y F C G H F K L S M Y E V D E R P L F F T F A . . . . . . 38141 GGAGTATTCTTATTCATTTGAATCCTGCTTTTTTCCTAGTTGTAATTAGCTCCTCTCTTC G V F L F I - I L L F S - L - L A P L F E Y S Y S F E S C F F P S C N - L L S S G S I L I H L N P A F F L V V I S S S L . . . . . . 38201 TTTCTTTCAGTCATATACTTCAGTTCTATTTTCAAGTGGTTATGGAGAGTGCAGTATCCC F L S V I Y F S S I F K W L W R V Q Y P F F Q S Y T S V L F S S G Y G E C S I P L S F S H I L Q F Y F Q V V M E S A V S . . . . . . 38261 ACTCTTCAGTACAACTCCATATTGATTTTGGGTAAATGGTCAAGCTATAAAACATATCTG T L Q Y N S I L I L G K W S S Y K T Y L L F S T T P Y - F W V N G Q A I K H I C H S S V Q L H I D F G - M V K L - N I S . . . . . . 38321 TAGTATGATATTGTATCTTCTTATGTCAGTTTTCTGATTAGTTTCTTCACATGTTCATTG - Y D I V S S Y V S F L I S F F T C S L S M I L Y L L M S V F - L V S S H V H - V V - Y C I F L C Q F S D - F L H M F I . . . . . . 38381 AGGTGGTTAGGTGGTGCTGGGTTAGGTTTGTCTGAAGTATATGTTATGTTTAAGTTATTA R W L G G A G L G L S E V Y V M F K L L G G - V V L G - V C L K Y M L C L S Y Y E V V R W C W V R F V - S I C Y V - V I . . . . . . 38441 TATTGATGATGATCATACAAAAATCTGGATAAACCCTTTATTTTGTATACTGATCTGTTC Y - - - S Y K N L D K P F I L Y T D L F I D D D H T K I W I N P L F C I L I C S I L M M I I Q K S G - T L Y F V Y - S V . . . . . . 38501 AATATTATACTAGACTTCTGGATATTTGATTTTGTGTGAGGCAGGTTGCAACAAGCCTAT N I I L D F W I F D F V - G R L Q Q A Y I L Y - T S G Y L I L C E A G C N K P I Q Y Y T R L L D I - F C V R Q V A T S L . . . . . . 38561 TCAATAAGGTAAATAAAACCAATCTAAAATTCCTCTAATATTAAGGTTATCAAACTCAAC S I R - I K P I - N S S N I K V I K L N Q - G K - N Q S K I P L I L R L S N S T F N K V N K T N L K F L - Y - G Y Q T Q . . . . . . 38621 CTCCAGAAAGCTGGAGGATATCCTCAAAAAAGTTATCAAACTCAACCTCCTACAAGCTGG L Q K A G G Y P Q K S Y Q T Q P P T S W S R K L E D I L K K V I K L N L L Q A G P P E S W R I S S K K L S N S T S Y K L . . . . . . 38681 GCTCCTCCTGGTGCGCAGTTGCAACAACATGGTTATGGTTACCTCCAACCTGGAACATAT A P P G A Q L Q Q H G Y G Y L Q P G T Y L L L V R S C N N M V M V T S N L E H I G S S W C A V A T T W L W L P P T W N I . . . . . . 38741 CCACGTCCATCTCCCCAATATAACACGTCTCAATCAGCCTACCTAGTTACCCTCCACAAC P R P S P Q Y N T S Q S A Y L V T L H N H V H L P N I T R L N Q P T - L P S T T S T S I S P I - H V S I S L P S Y P P Q . . . . . . 38801 AGGCCTCTGGTGGATATGCATCTGGTTGGGATCAAACAACTTCACCAAACCAGCAAACGT R P L V D M H L V G I K Q L H Q T S K R G L W W I C I W L G S N N F T K P A N V Q A S G G Y A S G W D Q T T S P N Q Q T . . . . . . 38861 CTCAGGCAGGTGGTTATGATTACTATAGTCAGCAGGCACCCTCACAACAGCAACAAACAC L R Q V V M I T I V S R H P H N S N K H S G R W L - L L - S A G T L T T A T N T S Q A G G Y D Y Y S Q Q A P S Q Q Q Q T . . . . . . 38921 CTGGAGGTTCAGCATCTTCAACTGATACTACTGCCTATGGTTAAAATCAGCCTTCAGCCA L E V Q H L Q L I L L P M V K I S L Q P W R F S I F N - Y Y C L W L K S A F S H P G G S A S S T D T T A Y G - N Q P S A . . . . . . 38981 CAAGTTACAACCAGGGACAAATTTACTCCCAAGATGGCTATGGTGGATATCATGCACCTG Q V T T R D K F T P K M A M V D I M H L K L Q P G T N L L P R W L W W I S C T C T S Y N Q G Q I Y S Q D G Y G G Y H A P . . . . . . 39041 CTACTCAATCGGTCATCAGGGTACTGGTTATGATCAGCAACAAGGTTATAGTGCTACTCC L L N R S S G Y W L - S A T R L - C Y S Y S I G H Q G T G Y D Q Q Q G Y S A T P A T Q S V I R V L V M I S N K V I V L L . . . . . . 39101 GAGCTATGGGAATGTACCGAACCCTACTTCTGATGGCCACAACACTTCACATGGTAGTGA E L W E C T E P Y F - W P Q H F T W - - S Y G N V P N P T S D G H N T S H G S D R A M G M Y R T L L L M A T T L H M V V . . . . . . 39161 TGGCAGTCAAGCACCTGCACCAGGTCAGTCATCAGTGGGCCAACAAGGCTATCAGTCTGG W Q S S T C T R S V I S G P T R L S V W G S Q A P A P G Q S S V G Q Q G Y Q S G M A V K H L H Q V S H Q W A N K A I S L . . . . . . 39221 CCAGCAGCCCAGCCCTACTCCTAGTTACCCATCTCAAGTCTCTACTCAATTTGGGTATGG P A A Q P Y S - L P I S S L Y S I W V W Q Q P S P T P S Y P S Q V S T Q F G Y G A S S P A L L L V T H L K S L L N L G M . . . . . . 39281 GATGCCACCTACTTCCCAAGATGGTTATGGTACCTAGTCACCAACAGGTTATGGCACCCA D A T Y F P R W L W Y L V T N R L W H P M P P T S Q D G Y G T - S P T G Y G T Q G C H L L P K M V M V P S H Q Q V M A P . . . . . . 39341 GCCAGCAGCAGGTTATAGGTCCCCTCAAGCCCAAAAGCCTCCGACTAGTCATCTAGCTTA A S S R L - V P S S P K A S D - S S S L P A A G Y R S P Q A Q K P P T S H L A Y S Q Q Q V I G P L K P K S L R L V I - L . . . . . . 39401 TGGTCAGCCTCAGCAATCTTCTAGTGCACAAGGTGGCTATACCCAACCTCCACCCGTGCA W S A S A I F - C T R W L Y P T S T R A G Q P Q Q S S S A Q G G Y T Q P P P V Q M V S L S N L L V H K V A I P N L H P C . . . . . . 39461 GCCCGGGTATCCACAAGCAGCAACTGCTCAATCAGGTTATGGTCAAGGTGAATCTGGGAC A R V S T S S N C S I R L W S R - I W D P G Y P Q A A T A Q S G Y G Q G E S G T S P G I H K Q Q L L N Q V M V K V N L G . . . . . . 39521 TCAGCGACCTCCATCCTCTTATGGCCCTCCAACAGCTCACCCTTGGTATAGGGCTGCTAG S A T S I L L W P S N S S P L V - G C - Q R P P S S Y G P P T A H P W Y R A A S L S D L H P L M A L Q Q L T L G I G L L . . . . . . 39581 CTATGGGCAGTTGCCACCACCTTACAGTAGTGGCTATGCTGGCAGTAATGTGCAGCCTCC L W A V A T T L Q - W L C W Q - C A A S Y G Q L P P P Y S S G Y A G S N V Q P P A M G S C H H L T V V A M L A V M C S L . . . . . . 39641 GGCAACGTACTCTACTGATGGCAATGGTGGTGCAAATCCAAAAATCCCAGTCTATTCAAC G N V L Y - W Q W W C K S K N P S L F N A T Y S T D G N G G A N P K I P V Y S T R Q R T L L M A M V V Q I Q K S Q S I Q . . . . . . 39701 CTAGTAATGAGGGGGTTCCAAAAGCCCCACCTCAAAGTTAATGGATGCTACTTGGAAGGA L V M R G F Q K P H L K V N G C Y L E G - - - G G S K S P T S K L M D A T W K D P S N E G V P K A P P Q S - W M L L G R . . . . . . 39761 TCAAATGATAGCTAGCTCCCTTATATATTGTTTCCTTATTTTGTTATGCTTTACTTTGGT S N D S - L P Y I L F P Y F V M L Y F G Q M I A S S L I Y C F L I L L C F T L V I K - - L A P L Y I V S L F C Y A L L W . . . . . . 39821 ATTATGTTAGGTTTCTGGTGCATTAAGAGAGTCTGAAACTTCAGTTTGTTTGTCTCTTTG I M L G F W C I K R V - N F S L F V S L L C - V S G A L R E S E T S V C L S L - Y Y V R F L V H - E S L K L Q F V C L F . . . . . . 39881 AGTACCTATGTGATCATACTGGTCAAACCTTTTTTCTTCTTTCTAATATAAGAACTCTTA S T Y V I I L V K P F F F F L I - E L L V P M - S Y W S N L F S S F - Y K N S - E Y L C D H T G Q T F F L L S N I R T L . 39941 AAAGG K K K R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-6_AGS-1_PPS_1 (38588 39073) (frame '1'; 483 bp, 161 residues) 1 NSSNIKVIKL NLQKAGGYPQ KSYQTQPPTS WAPPGAQLQQ HGYGYLQPGT YPRPSPQYNT 61 SQSAYLVTLH NRPLVDMHLV GIKQLHQTSK RLRQVVMITI VSRHPHNSNK HLEVQHLQLI 121 LLPMVKISLQ PQVTTRDKFT PKMAMVDIMH LLLNRSSGYW L- >C08SLm0119I05.1+_PGL-6_AGS-1_PPS_2 (39318 39704) (frame '2'; 384 bp, 128 residues) 1 SPTGYGTQPA AGYRSPQAQK PPTSHLAYGQ PQQSSSAQGG YTQPPPVQPG YPQAATAQSG 61 YGQGESGTQR PPSSYGPPTA HPWYRAASYG QLPPPYSSGY AGSNVQPPAT YSTDGNGGAN 121 PKIPVYST- >C08SLm0119I05.1+_PGL-6_AGS-1_PPS_3 (38083 38295) (frame '0'; 210 bp, 70 residues) 1 HFKLSMYEVD ERPLFFTFAG SILIHLNPAF FLVVISSSLL SFSHILQFYF QVVMESAVSH 61 SSVQLHIDFG - 3-phase translation of AGS-1 (-strand): . . . . . . 39945 CCTTTTAAGAGTTCTTATATTAGAAAGAAGAAAAAAGGTTTGACCAGTATGATCACATAG P F K S S Y I R K K K K G L T S M I T - L L R V L I L E R R K K V - P V - S H R F - E F L Y - K E E K R F D Q Y D H I . . . . . . 39885 GTACTCAAAGAGACAAACAAACTGAAGTTTCAGACTCTCTTAATGCACCAGAAACCTAAC V L K E T N K L K F Q T L L M H Q K P N Y S K R Q T N - S F R L S - C T R N L T G T Q R D K Q T E V S D S L N A P E T - . . . . . . 39825 ATAATACCAAAGTAAAGCATAACAAAATAAGGAAACAATATATAAGGGAGCTAGCTATCA I I P K - S I T K - G N N I - G S - L S - Y Q S K A - Q N K E T I Y K G A S Y H H N T K V K H N K I R K Q Y I R E L A I . . . . . . 39765 TTTGATCCTTCCAAGTAGCATCCATTAACTTTGAGGTGGGGCTTTTGGAACCCCCTCATT F D P S K - H P L T L R W G F W N P L I L I L P S S I H - L - G G A F G T P S L I - S F Q V A S I N F E V G L L E P P H . . . . . . 39705 ACTAGGTTGAATAGACTGGGATTTTTGGATTTGCACCACCATTGCCATCAGTAGAGTACG T R L N R L G F L D L H H H C H Q - S T L G - I D W D F W I C T T I A I S R V R Y - V E - T G I F G F A P P L P S V E Y . . . . . . 39645 TTGCCGGAGGCTGCACATTACTGCCAGCATAGCCACTACTGTAAGGTGGTGGCAACTGCC L P E A A H Y C Q H S H Y C K V V A T A C R R L H I T A S I A T T V R W W Q L P V A G G C T L L P A - P L L - G G G N C . . . . . . 39585 CATAGCTAGCAGCCCTATACCAAGGGTGAGCTGTTGGAGGGCCATAAGAGGATGGAGGTC H S - Q P Y T K G E L L E G H K R M E V I A S S P I P R V S C W R A I R G W R S P - L A A L Y Q G - A V G G P - E D G G . . . . . . 39525 GCTGAGTCCCAGATTCACCTTGACCATAACCTGATTGAGCAGTTGCTGCTTGTGGATACC A E S Q I H L D H N L I E Q L L L V D T L S P R F T L T I T - L S S C C L W I P R - V P D S P - P - P D - A V A A C G Y . . . . . . 39465 CGGGCTGCACGGGTGGAGGTTGGGTATAGCCACCTTGTGCACTAGAAGATTGCTGAGGCT R A A R V E V G Y S H L V H - K I A E A G L H G W R L G I A T L C T R R L L R L P G C T G G G W V - P P C A L E D C - G . . . . . . 39405 GACCATAAGCTAGATGACTAGTCGGAGGCTTTTGGGCTTGAGGGGACCTATAACCTGCTG D H K L D D - S E A F G L E G T Y N L L T I S - M T S R R L L G L R G P I T C C - P - A R - L V G G F W A - G D L - P A . . . . . . 39345 CTGGCTGGGTGCCATAACCTGTTGGTGACTAGGTACCATAACCATCTTGGGAAGTAGGTG L A G C H N L L V T R Y H N H L G K - V W L G A I T C W - L G T I T I L G S R W A G W V P - P V G D - V P - P S W E V G . . . . . . 39285 GCATCCCATACCCAAATTGAGTAGAGACTTGAGATGGGTAACTAGGAGTAGGGCTGGGCT A S H T Q I E - R L E M G N - E - G W A H P I P K L S R D L R W V T R S R A G L G I P Y P N - V E T - D G - L G V G L G . . . . . . 39225 GCTGGCCAGACTGATAGCCTTGTTGGCCCACTGATGACTGACCTGGTGCAGGTGCTTGAC A G Q T D S L V G P L M T D L V Q V L D L A R L I A L L A H - - L T W C R C L T C W P D - - P C W P T D D - P G A G A - . . . . . . 39165 TGCCATCACTACCATGTGAAGTGTTGTGGCCATCAGAAGTAGGGTTCGGTACATTCCCAT C H H Y H V K C C G H Q K - G S V H S H A I T T M - S V V A I R S R V R Y I P I L P S L P C E V L W P S E V G F G T F P . . . . . . 39105 AGCTCGGAGTAGCACTATAACCTTGTTGCTGATCATAACCAGTACCCTGATGACCGATTG S S E - H Y N L V A D H N Q Y P D D R L A R S S T I T L L L I I T S T L M T D - - L G V A L - P C C - S - P V P - - P I . . . . . . 39045 AGTAGCAGGTGCATGATATCCACCATAGCCATCTTGGGAGTAAATTTGTCCCTGGTTGTA S S R C M I S T I A I L G V N L S L V V V A G A - Y P P - P S W E - I C P W L - E - Q V H D I H H S H L G S K F V P G C . . . . . . 38985 ACTTGTGGCTGAAGGCTGATTTTAACCATAGGCAGTAGTATCAGTTGAAGATGCTGAACC T C G - R L I L T I G S S I S - R C - T L V A E G - F - P - A V V S V E D A E P N L W L K A D F N H R Q - Y Q L K M L N . . . . . . 38925 TCCAGGTGTTTGTTGCTGTTGTGAGGGTGCCTGCTGACTATAGTAATCATAACCACCTGC S R C L L L L - G C L L T I V I I T T C P G V C C C C E G A C - L - - S - P P A L Q V F V A V V R V P A D Y S N H N H L . . . . . . 38865 CTGAGACGTTTGCTGGTTTGGTGAAGTTGTTTGATCCCAACCAGATGCATATCCACCAGA L R R L L V W - S C L I P T R C I S T R - D V C W F G E V V - S Q P D A Y P P E P E T F A G L V K L F D P N Q M H I H Q . . . . . . 38805 GGCCTGTTGTGGAGGGTAACTAGGTAGGCTGATTGAGACGTGTTATATTGGGGAGATGGA G L L W R V T R - A D - D V L Y W G D G A C C G G - L G R L I E T C Y I G E M D R P V V E G N - V G - L R R V I L G R W . . . . . . 38745 CGTGGATATGTTCCAGGTTGGAGGTAACCATAACCATGTTGTTGCAACTGCGCACCAGGA R G Y V P G W R - P - P C C C N C A P G V D M F Q V G G N H N H V V A T A H Q E T W I C S R L E V T I T M L L Q L R T R . . . . . . 38685 GGAGCCCAGCTTGTAGGAGGTTGAGTTTGATAACTTTTTTGAGGATATCCTCCAGCTTTC G A Q L V G G - V - - L F - G Y P P A F E P S L - E V E F D N F F E D I L Q L S R S P A C R R L S L I T F L R I S S S F . . . . . . 38625 TGGAGGTTGAGTTTGATAACCTTAATATTAGAGGAATTTTAGATTGGTTTTATTTACCTT W R L S L I T L I L E E F - I G F I Y L G G - V - - P - Y - R N F R L V L F T L L E V E F D N L N I R G I L D W F Y L P . . . . . . 38565 ATTGAATAGGCTTGTTGCAACCTGCCTCACACAAAATCAAATATCCAGAAGTCTAGTATA I E - A C C N L P H T K S N I Q K S S I L N R L V A T C L T Q N Q I S R S L V - Y - I G L L Q P A S H K I K Y P E V - Y . . . . . . 38505 ATATTGAACAGATCAGTATACAAAATAAAGGGTTTATCCAGATTTTTGTATGATCATCAT I L N R S V Y K I K G L S R F L Y D H H Y - T D Q Y T K - R V Y P D F C M I I I N I E Q I S I Q N K G F I Q I F V - S S . . . . . . 38445 CAATATAATAACTTAAACATAACATATACTTCAGACAAACCTAACCCAGCACCACCTAAC Q Y N N L N I T Y T S D K P N P A P P N N I I T - T - H I L Q T N L T Q H H L T S I - - L K H N I Y F R Q T - P S T T - . . . . . . 38385 CACCTCAATGAACATGTGAAGAAACTAATCAGAAAACTGACATAAGAAGATACAATATCA H L N E H V K K L I R K L T - E D T I S T S M N M - R N - S E N - H K K I Q Y H P P Q - T C E E T N Q K T D I R R Y N I . . . . . . 38325 TACTACAGATATGTTTTATAGCTTGACCATTTACCCAAAATCAATATGGAGTTGTACTGA Y Y R Y V L - L D H L P K I N M E L Y - T T D M F Y S L T I Y P K S I W S C T E I L Q I C F I A - P F T Q N Q Y G V V L . . . . . . 38265 AGAGTGGGATACTGCACTCTCCATAACCACTTGAAAATAGAACTGAAGTATATGACTGAA R V G Y C T L H N H L K I E L K Y M T E E W D T A L S I T T - K - N - S I - L K K S G I L H S P - P L E N R T E V Y D - . . . . . . 38205 AGAAAGAAGAGAGGAGCTAATTACAACTAGGAAAAAAGCAGGATTCAAATGAATAAGAAT R K K R G A N Y N - E K S R I Q M N K N E R R E E L I T T R K K A G F K - I R I K K E E R S - L Q L G K K Q D S N E - E . . . . . . 38145 ACTCCCCGCAAAAGTAAAGAAGAGCGGGCGTTCATCTACTTCATACATGGATAATTTGAA T P R K S K E E R A F I Y F I H G - F E L P A K V K K S G R S S T S Y M D N L K Y S P Q K - R R A G V H L L H T W I I - . 38085 ATGAA M - N E Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-6_AGS-1_PPS_1 (38556 38341) (frame '1'; 213 bp, 71 residues) 1 ACCNLPHTKS NIQKSSIILN RSVYKIKGLS RFLYDHHQYN NLNITYTSDK PNPAPPNHLN 61 EHVKKLIRKL T- >C08SLm0119I05.1-_PGL-6_AGS-1_PPS_2 (38773 38561) (frame '0'; 210 bp, 70 residues) 1 LRRVILGRWT WICSRLEVTI TMLLQLRTRR SPACRRLSLI TFLRISSSFL EVEFDNLNIR 61 GILDWFYLPY - >C08SLm0119I05.1-_PGL-6_AGS-1_PPS_3 (39695 39492) (frame '2'; 201 bp, 67 residues) 1 IDWDFWICTT IAISRVRCRR LHITASIATT VRWWQLPIAS SPIPRVSCWR AIRGWRSLSP 61 RFTLTIT- PGL 7 (+ strand): 41420 41918 AGS-1 (41420 41918) SCR (e 0.881) Exon 1 41420 41918 ( 499 n); score: 0.881 PGS (41420 41918) SGN-E542836- PGS (41428 41867) SGN-E354965+ PGS (41552 41918) SGN-E204533- 3-phase translation of AGS-1 (+strand): . . . . . . 41420 TCTAACAGATGACAAATGATTAACGATATGAAAAGAGGCGTGAAGGGATGAAATTATAAT S N R - Q M I N D M K R G V K G - N Y N L T D D K - L T I - K E A - R D E I I I - Q M T N D - R Y E K R R E G M K L - . . . . . . 41480 AGTCATCATTGTGGTAATTATAAAAGGAAGAACATTATCGGTTCTCCAAATAGTCCATCA S H H C G N Y K R K N I I G S P N S P S V I I V V I I K G R T L S V L Q I V H Q - S S L W - L - K E E H Y R F S K - S I . . . . . . 41540 AAATGTGAAGGCAATTTTTGTTATCAAAATGGTACGAAAGGTCATTGGACTTGTGAATGT K C E G N F C Y Q N G T K G H W T C E C N V K A I F V I K M V R K V I G L V N V K M - R Q F L L S K W Y E R S L D L - M . . . . . . 41600 TGTCGCCTCAATAATTTGACAAGTTTATAAATCCTCCATCAAAAGACAAGAAGATAAAGT C R L N N L T S L - I L H Q K T R R - S V A S I I - Q V Y K S S I K R Q E D K V L S P Q - F D K F I N P P S K D K K I K . . . . . . 41660 GATGGTACACTTAATCTTTCAAGGTGATGTTGAGGTGTTTCATGGAAATATGATGAATTT D G T L N L S R - C - G V S W K Y D E F M V H L I F Q G D V E V F H G N M M N F - W Y T - S F K V M L R C F M E I - - I . . . . . . 41720 TAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAATTACATATAAAGGATTAGTCC - S H D N V L I M Q I Y E L H I K D - S K A M T M C L - C K F M N Y I - R I S P L K P - Q C A Y N A N L - I T Y K G L V . . . . . . 41780 ATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTAAAAACTCAACCATTCTATATAA I P - R E C D L - - V S - K L N H S I - F L E E N V T C D E Y R K N S T I L Y K H S L K R M - L V M S I V K T Q P F Y I . . . . . . 41840 GAATGGGTCAAGATGTGATAAAATCATTATGGGTTGGATATATGCAACAACTCACCTCTA E W V K M - - N H Y G L D I C N N S P L N G S R C D K I I M G W I Y A T T H L Y R M G Q D V I K S L W V G Y M Q Q L T S . . 41900 TGGGAGGTTTGGAAAAAAA W E V W K K G R F G K K M G G L E K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 41918 TTTTTTTCCAAACCTCCCATAGAGGTGAGTTGTTGCATATATCCAACCCATAATGATTTT F F S K P P I E V S C C I Y P T H N D F F F P N L P - R - V V A Y I Q P I M I L F F Q T S H R G E L L H I S N P - - F . . . . . . 41858 ATCACATCTTGACCCATTCTTATATAGAATGGTTGAGTTTTTACGATACTCATCACAAGT I T S - P I L I - N G - V F T I L I T S S H L D P F L Y R M V E F L R Y S S Q V Y H I L T H S Y I E W L S F Y D T H H K . . . . . . 41798 CACATTCTCTTCAAGGAATGGACTAATCCTTTATATGTAATTCATAAATTTGCATTATAA H I L F K E W T N P L Y V I H K F A L - T F S S R N G L I L Y M - F I N L H Y K S H S L Q G M D - S F I C N S - I C I I . . . . . . 41738 GCACATTGTCATGGCTTTAAAATTCATCATATTTCCATGAAACACCTCAACATCACCTTG A H C H G F K I H H I S M K H L N I T L H I V M A L K F I I F P - N T S T S P - S T L S W L - N S S Y F H E T P Q H H L . . . . . . 41678 AAAGATTAAGTGTACCATCACTTTATCTTCTTGTCTTTTGATGGAGGATTTATAAACTTG K D - V Y H H F I F L S F D G G F I N L K I K C T I T L S S C L L M E D L - T C E R L S V P S L Y L L V F - W R I Y K L . . . . . . 41618 TCAAATTATTGAGGCGACAACATTCACAAGTCCAATGACCTTTCGTACCATTTTGATAAC S N Y - G D N I H K S N D L S Y H F D N Q I I E A T T F T S P M T F R T I L I T V K L L R R Q H S Q V Q - P F V P F - - . . . . . . 41558 AAAAATTGCCTTCACATTTTGATGGACTATTTGGAGAACCGATAATGTTCTTCCTTTTAT K N C L H I L M D Y L E N R - C S S F Y K I A F T F - W T I W R T D N V L P F I Q K L P S H F D G L F G E P I M F F L L . . . . . . 41498 AATTACCACAATGATGACTATTATAATTTCATCCCTTCACGCCTCTTTTCATATCGTTAA N Y H N D D Y Y N F I P S R L F S Y R - I T T M M T I I I S S L H A S F H I V N - L P Q - - L L - F H P F T P L F I S L . . 41438 TCATTTGTCATCTGTTAGA S F V I C - H L S S V R I I C H L L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 44294 43209 AGS-1 (44294 43209) SCR (e 0.889) Exon 1 44294 43209 (1086 n); score: 0.889 PGS (43783 43209) SGN-E273497+ PGS (43783 43472) SGN-E273387+ PGS (44152 43482) SGN-E391540- PGS (44032 43482) SGN-E205808- PGS (43936 43485) SGN-E202657- PGS (44108 43529) SGN-E267707- PGS (44294 43885) SGN-E289962- 3-phase translation of AGS-1 (-strand): . . . . . . 44294 AGTAAATTTACTGCAAAACAGATATTTGGTCGAGTATTGTTAGCAAGATGCATTAGTACC S K F T A K Q I F G R V L L A R C I S T V N L L Q N R Y L V E Y C - Q D A L V P - I Y C K T D I W S S I V S K M H - Y . . . . . . 44234 CTAATTGCACTAAGATATGGAGTTTCATCACTAAAAAGCTCTTAATCCTTCTCTTGAGAT L I A L R Y G V S S L K S S - S F S - D - L H - D M E F H H - K A L N P S L E I P N C T K I W S F I T K K L L I L L L R . . . . . . 44174 CAAAATGAATCATTATTTATTTCAAGCGATCTCACAATCATTGGGGTACTCAATAAATGT Q N E S L F I S S D L T I I G V L N K C K M N H Y L F Q A I S Q S L G Y S I N V S K - I I I Y F K R S H N H W G T Q - M . . . . . . 44114 GATTTATCCATATAAAATTGTATCAAAACTTTTTTGTGTATGTGCACTGATAGACAAATA D L S I - N C I K T F L C M C T D R Q I I Y P Y K I V S K L F C V C A L I D K Y - F I H I K L Y Q N F F V Y V H - - T N . . . . . . 44054 TTTCATTTGTCAAACTATCAATCTGTAGGTCAAGACAAAATTATGTCTTACCAAAAATTT F H L S N Y Q S V G Q D K I M S Y Q K F F I C Q T I N L - V K T K L C L T K N F I S F V K L S I C R S R Q N Y V L P K I . . . . . . 43994 TTCATTAAAATACAAAGACAATTAGGGTCATTCTTTTGTACCCTTTTCTTCCTTGACTAT F I K I Q R Q L G S F F C T L F F L D Y S L K Y K D N - G H S F V P F S S L T I F H - N T K T I R V I L L Y P F L P - L . . . . . . 43934 TTCAATCCATATAAGGATTCTTGAAGCTTTATTCAAAAAGTTTCTTTCAAACTCTTATAT F N P Y K D S - S F I Q K V S F K L L Y S I H I R I L E A L F K K F L S N S Y M F Q S I - G F L K L Y S K S F F Q T L I . . . . . . 43874 GCTCCAGGCACCTCGATTACTTCAAGGATTTTTACATAACCTTCAGTTTTGTCTAGCTAG A P G T S I T S R I F T - P S V L S S - L Q A P R L L Q G F L H N L Q F C L A R C S R H L D Y F K D F Y I T F S F V - L . . . . . . 43814 ACATGATAATTATTCATTATATGCATTCAAGTTTTCATATATTGCCAAAGAAAAACAAAT T - - L F I I C I Q V F I Y C Q R K T N H D N Y S L Y A F K F S Y I A K E K Q I D M I I I H Y M H S S F H I L P K K N K . . . . . . 43754 CTCATTGCATCTATCAGAGGAGAAAACATCTCCAATAATGTCAGAATTTTTGCGACAAAC L I A S I R G E N I S N N V R I F A T N S L H L S E E K T S P I M S E F L R Q T S H C I Y Q R R K H L Q - C Q N F C D K . . . . . . 43694 CTTTATGCCCAAGTCACAAACCATACTTGATATCTTATGATTATATCATTGCATAATAAC L Y A Q V T N H T - Y L M I I S L H N N F M P K S Q T I L D I L - L Y H C I I T P L C P S H K P Y L I S Y D Y I I A - - . . . . . . 43634 TTTGTACCCCTCTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTT F V P L - H Y I L I Y G L S V Q N V T F L Y P S D I I S - F M D Y Q S K M S L F L C T P L T L Y L D L W T I S P K C H F . . . . . . 43574 CTAAGTGAAACAAAATATACTTGAATTATGCATTTTACTTGGCCAACCGTTTATCTGTTC L S E T K Y T - I M H F T W P T V Y L F - V K Q N I L E L C I L L G Q P F I C S S K - N K I Y L N Y A F Y L A N R L S V . . . . . . 43514 ACACTATATGCTAGATTTGAATTCAAGATCCTCATTACAGTTTATATCATTGAGTGCTAC T L Y A R F E F K I L I T V Y I I E C Y H Y M L D L N S R S S L Q F I S L S A T H T I C - I - I Q D P H Y S L Y H - V L . . . . . . 43454 TTTATATCAAAGATACCGACGATTATTTGATATCGATTTCAATATGACATAACTTATCGA F I S K I P T I I - Y R F Q Y D I T Y R L Y Q R Y R R L F D I D F N M T - L I E L Y I K D T D D Y L I S I S I - H N L S . . . . . . 43394 GATCCCTTCATTTTTCAGGTACCTGAACCGTTTCCGAGGTTTTATGAAGTGTTATGTTAA D P F I F Q V P E P F P R F Y E V L C - I P S F F R Y L N R F R G F M K C Y V N R S L H F S G T - T V S E V L - S V M L . . . . . . 43334 TGTGCTCTTTTATAGTTTTTGTCTCATTATCATGACCATATTGATCATTTGCTCCTCTCC C A L L - F L S H Y H D H I D H L L L S V L F Y S F C L I I M T I L I I C S S P M C S F I V F V S L S - P Y - S F A P L . . . . . . 43274 TTCTTCAAGGAATTTTATATTTGGAACCGATTTGTCTATTACGCTTTCGACGTATCATAG F F K E F Y I W N R F V Y Y A F D V S - S S R N F I F G T D L S I T L S T Y H R L L Q G I L Y L E P I C L L R F R R I I . 43214 ACTCTG T L L D S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-8_AGS-1_PPS_1 (43969 43655) (frame '2'; 312 bp, 104 residues) 1 GHSFVPFSSL TISIHIRILE ALFKKFLSNS YMLQAPRLLQ GFLHNLQFCL ARHDNYSLYA 61 FKFSYIAKEK QISLHLSEEK TSPIMSEFLR QTFMPKSQTI LDIL- >C08SLm0119I05.1-_PGL-8_AGS-1_PPS_2 (43402 43211) (frame '2'; 192 bp, 64 residues) 1 LIEIPSFFRY LNRFRGFMKC YVNVLFYSFC LIIMTILIIC SSPSSRNFIF GTDLSITLST 61 YHRL 3-phase translation of AGS-1 (+strand): . . . . . . 43209 CAGAGTCTATGATACGTCGAAAGCGTAATAGACAAATCGGTTCCAAATATAAAATTCCTT Q S L - Y V E S V I D K S V P N I K F L R V Y D T S K A - - T N R F Q I - N S L E S M I R R K R N R Q I G S K Y K I P . . . . . . 43269 GAAGAAGGAGAGGAGCAAATGATCAATATGGTCATGATAATGAGACAAAAACTATAAAAG E E G E E Q M I N M V M I M R Q K L - K K K E R S K - S I W S - - - D K N Y K R - R R R G A N D Q Y G H D N E T K T I K . . . . . . 43329 AGCACATTAACATAACACTTCATAAAACCTCGGAAACGGTTCAGGTACCTGAAAAATGAA S T L T - H F I K P R K R F R Y L K N E A H - H N T S - N L G N G S G T - K M K E H I N I T L H K T S E T V Q V P E K - . . . . . . 43389 GGGATCTCGATAAGTTATGTCATATTGAAATCGATATCAAATAATCGTCGGTATCTTTGA G I S I S Y V I L K S I S N N R R Y L - G S R - V M S Y - N R Y Q I I V G I F D R D L D K L C H I E I D I K - S S V S L . . . . . . 43449 TATAAAGTAGCACTCAATGATATAAACTGTAATGAGGATCTTGAATTCAAATCTAGCATA Y K V A L N D I N C N E D L E F K S S I I K - H S M I - T V M R I L N S N L A Y I - S S T Q - Y K L - - G S - I Q I - H . . . . . . 43509 TAGTGTGAACAGATAAACGGTTGGCCAAGTAAAATGCATAATTCAAGTATATTTTGTTTC - C E Q I N G W P S K M H N S S I F C F S V N R - T V G Q V K C I I Q V Y F V S I V - T D K R L A K - N A - F K Y I L F . . . . . . 43569 ACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGAGGGG T - K S D I L D - - S I N Q D I M S E G L R K V T F W T D S P - I K I - C Q R G H L E K - H F G L I V H K S R Y N V R G . . . . . . 43629 TACAAAGTTATTATGCAATGATATAATCATAAGATATCAAGTATGGTTTGTGACTTGGGC Y K V I M Q - Y N H K I S S M V C D L G T K L L C N D I I I R Y Q V W F V T W A V Q S Y Y A M I - S - D I K Y G L - L G . . . . . . 43689 ATAAAGGTTTGTCGCAAAAATTCTGACATTATTGGAGATGTTTTCTCCTCTGATAGATGC I K V C R K N S D I I G D V F S S D R C - R F V A K I L T L L E M F S P L I D A H K G L S Q K F - H Y W R C F L L - - M . . . . . . 43749 AATGAGATTTGTTTTTCTTTGGCAATATATGAAAACTTGAATGCATATAATGAATAATTA N E I C F S L A I Y E N L N A Y N E - L M R F V F L W Q Y M K T - M H I M N N Y Q - D L F F F G N I - K L E C I - - I I . . . . . . 43809 TCATGTCTAGCTAGACAAAACTGAAGGTTATGTAAAAATCCTTGAAGTAATCGAGGTGCC S C L A R Q N - R L C K N P - S N R G A H V - L D K T E G Y V K I L E V I E V P I M S S - T K L K V M - K S L K - S R C . . . . . . 43869 TGGAGCATATAAGAGTTTGAAAGAAACTTTTTGAATAAAGCTTCAAGAATCCTTATATGG W S I - E F E R N F L N K A S R I L I W G A Y K S L K E T F - I K L Q E S L Y G L E H I R V - K K L F E - S F K N P Y M . . . . . . 43929 ATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTATTTT I E I V K E E K G T K E - P - L S L Y F L K - S R K K R V Q K N D P N C L C I L D - N S Q G R K G Y K R M T L I V F V F . . . . . . 43989 AATGAAAAATTTTTGGTAAGACATAATTTTGTCTTGACCTACAGATTGATAGTTTGACAA N E K F L V R H N F V L T Y R L I V - Q M K N F W - D I I L S - P T D - - F D K - - K I F G K T - F C L D L Q I D S L T . . . . . . 44049 ATGAAATATTTGTCTATCAGTGCACATACACAAAAAAGTTTTGATACAATTTTATATGGA M K Y L S I S A H T Q K S F D T I L Y G - N I C L S V H I H K K V L I Q F Y M D N E I F V Y Q C T Y T K K F - Y N F I W . . . . . . 44109 TAAATCACATTTATTGAGTACCCCAATGATTGTGAGATCGCTTGAAATAAATAATGATTC - I T F I E Y P N D C E I A - N K - - F K S H L L S T P M I V R S L E I N N D S I N H I Y - V P Q - L - D R L K - I M I . . . . . . 44169 ATTTTGATCTCAAGAGAAGGATTAAGAGCTTTTTAGTGATGAAACTCCATATCTTAGTGC I L I S R E G L R A F - - - N S I S - C F - S Q E K D - E L F S D E T P Y L S A H F D L K R R I K S F L V M K L H I L V . . . . . . 44229 AATTAGGGTACTAATGCATCTTGCTAACAATACTCGACCAAATATCTGTTTTGCAGTAAA N - G T N A S C - Q Y S T K Y L F C S K I R V L M H L A N N T R P N I C F A V N Q L G Y - C I L L T I L D Q I S V L Q - . 44289 TTTACT F T L I Y Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (- strand): 56392 49004 AGS-1 (56392 56085,55529 55193,55085 54942,54831 54730,51934 51831,51706 51580,51442 51290,50623 50523,49661 49004) SCR (e 1.000 d 0.928 a 0.970,e 1.000 d 0.980 a 0.996,e 1.000 d 1.000 a 0.994,e 1.000 d 0.993 a 0.991,e 1.000 d 0.990 a 0.885,e 0.992 d 0.979 a 0.728,e 1.000 d 0.949 a 0.730,e 1.000 d 0.972 a 0.999,e 0.985) Exon 1 56392 56085 ( 308 n); score: 1.000 Intron 1 56084 55530 ( 555 n); Pd: 0.928 Pa: 0.970 Exon 2 55529 55193 ( 337 n); score: 1.000 Intron 2 55192 55086 ( 107 n); Pd: 0.980 Pa: 0.996 Exon 3 55085 54942 ( 144 n); score: 1.000 Intron 3 54941 54832 ( 110 n); Pd: 1.000 Pa: 0.994 Exon 4 54831 54730 ( 102 n); score: 1.000 Intron 4 54729 51935 (2795 n); Pd: 0.993 Pa: 0.991 Exon 5 51934 51831 ( 104 n); score: 1.000 Intron 5 51830 51707 ( 124 n); Pd: 0.990 Pa: 0.885 Exon 6 51706 51580 ( 127 n); score: 0.992 Intron 6 51579 51443 ( 137 n); Pd: 0.979 Pa: 0.728 Exon 7 51442 51290 ( 153 n); score: 1.000 Intron 7 51289 50624 ( 666 n); Pd: 0.949 Pa: 0.730 Exon 8 50623 50523 ( 101 n); score: 1.000 Intron 8 50522 49662 ( 861 n); Pd: 0.972 Pa: 0.999 Exon 9 49661 49004 ( 658 n); score: 0.985 PGS (51347 51290,50623 50523,49661 49004) SGN-E538498- PGS (49492 49008) SGN-E378958- PGS (49435 49008) SGN-E206849- PGS (49661 49049) SGN-E379435- PGS (50598 50523,49661 49072) SGN-E214448+ PGS (51909 51831,51706 51580,51442 51290,50623 50523,49661 49420) SGN-E276279+ PGS (55395 55193,55085 54942,54831 54730,51934 51831,51706 51586) SGN-E211321+ PGS (55390 55193,55085 54942,54831 54730,51934 51831,51706 51663) SGN-E254151+ PGS (56346 56085,55529 55193,55085 54942,54831 54752) SGN-E538500+ PGS (56217 56085,55529 55193,55085 54942,54831 54754) SGN-E398475+ PGS (56166 56085,55529 55193,55085 54947) SGN-E214484+ PGS (56267 56085,55529 55193,55085 54988) SGN-E213687+ PGS (56239 56085,55529 55193,55085 55077) SGN-E269472+ PGS (56239 56085,55529 55196) SGN-E211545+ PGS (56345 56085,55529 55261) SGN-E271087+ PGS (56392 56085,55529 55360) SGN-E273999+ PGS (56392 56085,55529 55386) SGN-E274044+ 3-phase translation of AGS-1 (-strand): . . . . . . 56392 ATTTCTCTCCATCCAATTAGCTTCCATAAACCCTATATTTCTTTGACTCTTCTCAATATT I S L H P I S F H K P Y I S L T L L N I F L S I Q L A S I N P I F L - L F S I F F S P S N - L P - T L Y F F D S S Q Y . . . . . . 56332 TTACTTTTTTAGCCAACCCCTTTAATTTTCTCACAAAAATTTCCACAAACTATACTTTTT L L F - P T P L I F S Q K F P Q T I L F Y F F S Q P L - F S H K N F H K L Y F F F T F L A N P F N F L T K I S T N Y T F . . . . . . 56272 TCTGCATTTAATAGTATTATTTTTCTTTCAAACCCATAAAAAACTAGAATAAGATCTCTT S A F N S I I F L S N P - K T R I R S L L H L I V L F F F Q T H K K L E - D L F F C I - - Y Y F S F K P I K N - N K I S . . . . . . 56212 TTTGGAAAGTTTTGATAGAAGAAAATCATCACATAGTAGATCATGGAAACAGGGACGATC F G K F - - K K I I T - - I M E T G T I L E S F D R R K S S H S R S W K Q G R S F W K V L I E E N H H I V D H G N R D D . . . . . . 56152 TCTCGACTTCTTAAACCGACTAAGGTTCCAAGTTCTAGTTTTTCCAGTTTCACTTCTAAC S R L L K P T K V P S S S F S S F T S N L D F L N R L R F Q V L V F P V S L L T L S T S - T D - G S K F - F F Q F H F - . : . . . . . 56092 TCTTCCAT : ATGCTGCTCGCGGACAAGGTTAATGCCTCCTTTCCATTCCTCACATGGTGGG S S I : C C S R T R L M P P F H S S H G G L P : Y A A R G Q G - C L L S I P H M V G L F H : M L L A D K V N A S F P F L T W W . . . . . . 55477 CGAGAAATGAATTCTGATGAGCGGGAGATTACAATTTTATCTTCTGAACTCACTCTCAAA R E M N S D E R E I T I L S S E L T L K E K - I L M S G R L Q F Y L L N S L S K A R N E F - - A G D Y N F I F - T H S Q . . . . . . 55417 AAAAGCAGTGTAGTTGAGGGATTGTCTTTACATCGCCCAGTGCACAAGAGAGATGTAGTT K S S V V E G L S L H R P V H K R D V V K A V - L R D C L Y I A Q C T R E M - L K K Q C S - G I V F T S P S A Q E R C S . . . . . . 55357 GGCAAGACGTTCTGCTCTGTTGGATTGTCTACATTTCCGGGGAGCATCGTTGAGTCTTCT G K T F C S V G L S T F P G S I V E S S A R R S A L L D C L H F R G A S L S L L W Q D V L L C W I V Y I S G E H R - V F . . . . . . 55297 TCCCAGACAACTGAAGAAAAGATCGGAGTGCTACTTTTGAATCTTGGAGGGCCAGACACA S Q T T E E K I G V L L L N L G G P D T P R Q L K K R S E C Y F - I L E G Q T H F P D N - R K D R S A T F E S W R A R H . . . . . : . 55237 CTTCATGATGTCCAGCCTTTTCTGTTCAACTTATTTGCTGATCCT : GACATTATACGTCTA L H D V Q P F L F N L F A D P : D I I R L F M M S S L F C S T Y L L I L : T L Y V Y T S - C P A F S V Q L I C - S : - H Y T S . . . . . . 55070 CCCAGATTGTTCAGATTTCTCCAGCGCCCATTGGCACAACTTATATCTGTTCTCCGAGCT P R L F R F L Q R P L A Q L I S V L R A P D C S D F S S A H W H N L Y L F S E L T Q I V Q I S P A P I G T T Y I C S P S . . . . . . 55010 CCGAAAAGCAAGGAAGGATATGCTGCAATTGGAGGTGGTTCTCCTTTACGAAAAATAACA P K S K E G Y A A I G G G S P L R K I T R K A R K D M L Q L E V V L L Y E K - Q S E K Q G R I C C N W R W F S F T K N N . : . . . . . 54950 GATGAGCAG : GCTAGTGTACTAAAAATTGCACTAGAAACAAAGGAAGTACCAGCTAATGTC D E Q : A S V L K I A L E T K E V P A N V M S R : L V Y - K L H - K Q R K Y Q L M S R - A : G - C T K N C T R N K G S T S - C . . . . . . : 54780 TATGTTGCGATGAGGTATTGGCACCCGTTCACCGAGGAAGCTGTTCACCAG : ATAAAAAGA Y V A M R Y W H P F T E E A V H Q : I K R M L R - G I G T R S P R K L F T R : - K E L C C D E V L A P V H R G S C S P : D K K . . . . . . 51925 GATGGGATTACAAAGCTTGTTGTACTGCCTTTATATCCTCAATACTCTATCTCTACAACT D G I T K L V V L P L Y P Q Y S I S T T M G L Q S L L Y C L Y I L N T L S L Q L R W D Y K A C C T A F I S S I L Y L Y N . . . . : . . 51865 GGTTCTAGTGTCCGTGCCCTTCAGAATATTTTCAA : AGGAGACTCTTATCTGTCCAGACTG G S S V R A L Q N I F K : G D S Y L S R L V L V S V P F R I F S : K E T L I C P D C W F - C P C P S E Y F Q : R R L L S V Q T . . . . . . 51681 CCAGTTGCAGTCATTGAATCCTGGTACCAACGACAAGGTTACATCAAGTCCATGGCAAAC P V A V I E S W Y Q R Q G Y I K S M A N Q L Q S L N P G T N D K V T S S P W Q T A S C S H - I L V P T T R L H Q V H G K . . . . . : . 51621 TTGATTGAGCAGGAGTTACATAATTTCACTAAGCCTGAGGAG : GTAATGATTTTCTTTAGT L I E Q E L H N F T K P E E : V M I F F S - L S R S Y I I S L S L R R : - - F S L V L D - A G V T - F H - A - G : G N D F L - . . . . . . 51424 GCCCATGGAGTGCCAATCAGTTATGTTGAAAATGCTGGTGATCCATATAGAGATCAGATG A H G V P I S Y V E N A G D P Y R D Q M P M E C Q S V M L K M L V I H I E I R W C P W S A N Q L C - K C W - S I - R S D . . . . . . 51364 GAGGAGTGCATTTTCTTGATAATGAAAGAGCTGAAAGCTAGAGAAATCAATAATGATCAT E E C I F L I M K E L K A R E I N N D H R S A F S - - - K S - K L E K S I M I I G G V H F L D N E R A E S - R N Q - - S . . : . . . . 51304 ACCTTGGCTTACCAG : AGCCGAGTTGGTCCTGTCCAATGGTTGAAGCCATACACTGATGAA T L A Y Q : S R V G P V Q W L K P Y T D E P W L T R : A E L V L S N G - S H T L M K Y L G L P : E P S W S C P M V E A I H - - . . . . . . : 50578 GTTCTTGTTGAGCTTGGACAGAAAGGTGTAAAGTCTCTGTTGGCTGTTCCAGTAAG : CTTT V L V E L G Q K G V K S L L A V P V S : F F L L S L D R K V - S L C W L F Q - : A L S S C - A W T E R C K V S V G C S S K : L . . . . . . 49657 GTGAGTGAGCATATAGAGACTCTTGAAGAGATTGATATGGAATACAAGGAGTTAGCTCTT V S E H I E T L E E I D M E Y K E L A L - V S I - R L L K R L I W N T R S - L L C E - A Y R D S - R D - Y G I Q G V S S . . . . . . 49597 GAATCGGGAATTGAAAATTGGGGTCGTGTTCCTGCTCTGAATTGCACCTCCTCTTTTATA E S G I E N W G R V P A L N C T S S F I N R E L K I G V V F L L - I A P P L L - - I G N - K L G S C S C S E L H L L F Y . . . . . . 49537 ACTGATCTGGCAGATGCTGTTATTGAAGCATTGCCCTCGACAATGGCAATGTCAACGTCC T D L A D A V I E A L P S T M A M S T S L I W Q M L L L K H C P R Q W Q C Q R P N - S G R C C Y - S I A L D N G N V N V . . . . . . 49477 ACTGGCACAGAGGAAGAAGTTGACAATAATCCGATGCAATATTTTATGAAAATGCTTTTC T G T E E E V D N N P M Q Y F M K M L F L A Q R K K L T I I R C N I L - K C F S H W H R G R S - Q - S D A I F Y E N A F . . . . . . 49417 GGATCAGTATTAGCATTTGTTTTTCTGTTTTTGCCAAAGATGGTATCGGCTTTTAATAAG G S V L A F V F L F L P K M V S A F N K D Q Y - H L F F C F C Q R W Y R L L I R R I S I S I C F S V F A K D G I G F - - . . . . . . 49357 AACATACTTTAGGGAGGACAGAGAGAGATCCTTTACAGAAATAGTACAGAGATCAAAAAG N I L - G G Q R E I L Y R N S T E I K K T Y F R E D R E R S F T E I V Q R S K S E H T L G R T E R D P L Q K - Y R D Q K . . . . . . 49297 CAATATTATGGTGCTGCCTGGAGGTTTTTTGATTTTATAAACAATTTACAAGAGTTGTTT Q Y Y G A A W R F F D F I N N L Q E L F N I M V L P G G F L I L - T I Y K S C F A I L W C C L E V F - F Y K Q F T R V V . . . . . . 49237 TTCCTACTAAAGATGCTTTTATTAGAGAGACTGGATTCGACATTATTGAAGGTGCTAGTA F L L K M L L L E R L D S T L L K V L V S Y - R C F Y - R D W I R H Y - R C - Y F P T K D A F I R E T G F D I I E G A S . . . . . . 49177 TTCTGTTTCTGGGGCAGCACTTGTGCATAGAAAGATAGCAAATCAGAGATGAAACAATCT F C F W G S T C A - K D S K S E M K Q S S V S G A A L V H R K I A N Q R - N N L I L F L G Q H L C I E R - Q I R D E T I . . . . . . 49117 TTGTGGCTTCAGTTTTAGAGATTAAAAATATCTTCTATTTTTTTTGTATATCTACGAATT L W L Q F - R L K I S S I F F V Y L R I C G F S F R D - K Y L L F F L Y I Y E L F V A S V L E I K N I F Y F F C I S T N . . . . . . 49057 ATCTTCTATTATACAATAAATTTATCATTTGTAGAAACAGTATGTACAAATTAA I F Y Y T I N L S F V E T V C T N - S S I I Q - I Y H L - K Q Y V Q I Y L L L Y N K F I I C R N S M Y K L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-9_AGS-1_PPS_1 (56173 56085,55529 55193,55085 54942,54831 54730,51934 51831,51706 51580,51442 51290,50623 50523,49661 49346) (frame '1'; 1470 bp, 490 residues) 1 IMETGTISRL LKPTKVPSSS FSSFTSNSSI CCSRTRLMPP FHSSHGGREM NSDEREITIL 61 SSELTLKKSS VVEGLSLHRP VHKRDVVGKT FCSVGLSTFP GSIVESSSQT TEEKIGVLLL 121 NLGGPDTLHD VQPFLFNLFA DPDIIRLPRL FRFLQRPLAQ LISVLRAPKS KEGYAAIGGG 181 SPLRKITDEQ ASVLKIALET KEVPANVYVA MRYWHPFTEE AVHQIKRDGI TKLVVLPLYP 241 QYSISTTGSS VRALQNIFKG DSYLSRLPVA VIESWYQRQG YIKSMANLIE QELHNFTKPE 301 EVMIFFSAHG VPISYVENAG DPYRDQMEEC IFLIMKELKA REINNDHTLA YQSRVGPVQW 361 LKPYTDEVLV ELGQKGVKSL LAVPVSFVSE HIETLEEIDM EYKELALESG IENWGRVPAL 421 NCTSSFITDL ADAVIEALPS TMAMSTSTGT EEEVDNNPMQ YFMKMLFGSV LAFVFLFLPK 481 MVSAFNKNIL - >C08SLm0119I05.1-_PGL-9_AGS-1_PPS_2 (49345 49148) (frame '1'; 195 bp, 65 residues) 1 GGQREILYRN STEIKKQYYG AAWRFFDFIN NLQELFFLLK MLLLERLDST LLKVLVFCFW 61 GSTCA- AGS-2 (51648 51580,51442 51290,50623 50523,49661 49307,49147 49116) SCR (e 1.000 d 0.979 a 0.728,e 0.967 d 0.949 a 0.730,e 0.990 d 0.972 a 0.999,e 0.944 d 0.000 a 0.000,e 0.938) Exon 1 51648 51580 ( 69 n); score: 1.000 Intron 1 51579 51443 ( 137 n); Pd: 0.979 Pa: 0.728 Exon 2 51442 51290 ( 153 n); score: 0.967 Intron 2 51289 50624 ( 666 n); Pd: 0.949 Pa: 0.730 Exon 3 50623 50523 ( 101 n); score: 0.990 Intron 3 50522 49662 ( 861 n); Pd: 0.972 Pa: 0.999 Exon 4 49661 49307 ( 355 n); score: 0.944 Intron 4 49306 49148 ( 159 n); Pd: 0.000 Pa: 0.000 Exon 5 49147 49116 ( 32 n); score: 0.938 PGS (51648 51580,51442 51290,50623 50523,49661 49307,49147 49116) SGN-E551787+ 3-phase translation of AGS-2 (-strand): . . . . . . 51648 CAAGGTTACATCAAGTCCATGGCAAACTTGATTGAGCAGGAGTTACATAATTTCACTAAG Q G Y I K S M A N L I E Q E L H N F T K K V T S S P W Q T - L S R S Y I I S L S R L H Q V H G K L D - A G V T - F H - . : . . . . . 51588 CCTGAGGAG : GTAATGATTTTCTTTAGTGCCCATGGAGTGCCAATCAGTTATGTTGAAAAT P E E : V M I F F S A H G V P I S Y V E N L R R : - - F S L V P M E C Q S V M L K M A - G : G N D F L - C P W S A N Q L C - K . . . . . . 51391 GCTGGTGATCCATATAGAGATCAGATGGAGGAGTGCATTTTCTTGATAATGAAAGAGCTG A G D P Y R D Q M E E C I F L I M K E L L V I H I E I R W R S A F S - - - K S - C W - S I - R S D G G V H F L D N E R A . . . . . : . 51331 AAAGCTAGAGAAATCAATAATGATCATACCTTGGCTTACCAG : AGCCGAGTTGGTCCTGTC K A R E I N N D H T L A Y Q : S R V G P V K L E K S I M I I P W L T R : A E L V L S E S - R N Q - - S Y L G L P : E P S W S C . . . . . . 50605 CAATGGTTGAAGCCATACACTGATGAAGTTCTTGTTGAGCTTGGACAGAAAGGTGTAAAG Q W L K P Y T D E V L V E L G Q K G V K N G - S H T L M K F L L S L D R K V - S P M V E A I H - - S S C - A W T E R C K . . . : . . . 50545 TCTCTGTTGGCTGTTCCAGTAAG : CTTTGTGAGTGAGCATATAGAGACTCTTGAAGAGATT S L L A V P V S : F V S E H I E T L E E I L C W L F Q - : A L - V S I - R L L K R L V S V G C S S K : L C E - A Y R D S - R D . . . . . . 49624 GATATGGAATACAAGGAGTTAGCTCTTGAATCGGGAATTGAAAATTGGGGTCGTGTTCCT D M E Y K E L A L E S G I E N W G R V P I W N T R S - L L N R E L K I G V V F L - Y G I Q G V S S - I G N - K L G S C S . . . . . . 49564 GCTCTGAATTGCACCTCCTCTTTTATAACTGATCTGGCAGATGCTGTTATTGAAGCATTG A L N C T S S F I T D L A D A V I E A L L - I A P P L L - L I W Q M L L L K H C C S E L H L L F Y N - S G R C C Y - S I . . . . . . 49504 CCCTCGACAATGGCAATGTCAACGTCCACTGGCACAGAGGAAGAAGTTGACAATAATCCG P S T M A M S T S T G T E E E V D N N P P R Q W Q C Q R P L A Q R K K L T I I R A L D N G N V N V H W H R G R S - Q - S . . . . . . 49444 ATGCAATATTTTATGAAAATGCTTTTCGGATCAGTATTAGCATTTGTTTTTCTGTTTTTG M Q Y F M K M L F G S V L A F V F L F L C N I L - K C F S D Q Y - H L F F C F C D A I F Y E N A F R I S I S I C F S V F . . . . . . 49384 CCAAAGATGGTATCGGCTTTTAATAAGAACATACTTTAGGGAGGACAGAGAGAGATCCTT P K M V S A F N K N I L - G G Q R E I L Q R W Y R L L I R T Y F R E D R E R S F A K D G I G F - - E H T L G R T E R D P . . : . . . 49324 TACAGAAATAGTACAGAG : AAAGATAGCAAATCAGAGATGAAACAATCTTT Y R N S T E : K D S K S E M K Q S T E I V Q R : K I A N Q R - N N L L Q K - Y R : E R - Q I R D E T I F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-9_AGS-2_PPS_1 (51648 51580,51442 51290,50623 50523,49661 49346) (frame '1'; 636 bp, 212 residues) 1 QGYIKSMANL IEQELHNFTK PEEVMIFFSA HGVPISYVEN AGDPYRDQME ECIFLIMKEL 61 KAREINNDHT LAYQSRVGPV QWLKPYTDEV LVELGQKGVK SLLAVPVSFV SEHIETLEEI 121 DMEYKELALE SGIENWGRVP ALNCTSSFIT DLADAVIEAL PSTMAMSTST GTEEEVDNNP 181 MQYFMKMLFG SVLAFVFLFL PKMVSAFNKN IL- AGS-3 (50257 50130,49661 49201) SCR (e 1.000 d 0.978 a 0.999,e 1.000) Exon 1 50257 50130 ( 128 n); score: 1.000 Intron 1 50129 49662 ( 468 n); Pd: 0.978 Pa: 0.999 Exon 2 49661 49201 ( 461 n); score: 1.000 PGS (50257 50130,49661 49201) SGN-E551297+ 3-phase translation of AGS-3 (-strand): . . . . . . 50257 GCAACTTGAATTTATAGAAAGGATCGTCATGTATGGATGCTAATCTCTTGTGCATGAGAG A T - I Y R K D R H V W M L I S C A - E Q L E F I E R I V M Y G C - S L V H E R N L N L - K G S S C M D A N L L C M R . . . . . . 50197 GTTGGAGATTTAATAATGTGACTATAACCGCGAGAACCTCTTTGACTAGTCAGAAGAAAA V G D L I M - L - P R E P L - L V R R K L E I - - C D Y N R E N L F D - S E E K G W R F N N V T I T A R T S L T S Q K K . : . . . . . 50137 AAAAGGGG : CTTTGTGAGTGAGCATATAGAGACTCTTGAAGAGATTGATATGGAATACAAG K R G : F V S E H I E T L E E I D M E Y K K G : A L - V S I - R L L K R L I W N T R K K G : L C E - A Y R D S - R D - Y G I Q . . . . . . 49609 GAGTTAGCTCTTGAATCGGGAATTGAAAATTGGGGTCGTGTTCCTGCTCTGAATTGCACC E L A L E S G I E N W G R V P A L N C T S - L L N R E L K I G V V F L L - I A P G V S S - I G N - K L G S C S C S E L H . . . . . . 49549 TCCTCTTTTATAACTGATCTGGCAGATGCTGTTATTGAAGCATTGCCCTCGACAATGGCA S S F I T D L A D A V I E A L P S T M A P L L - L I W Q M L L L K H C P R Q W Q L L F Y N - S G R C C Y - S I A L D N G . . . . . . 49489 ATGTCAACGTCCACTGGCACAGAGGAAGAAGTTGACAATAATCCGATGCAATATTTTATG M S T S T G T E E E V D N N P M Q Y F M C Q R P L A Q R K K L T I I R C N I L - N V N V H W H R G R S - Q - S D A I F Y . . . . . . 49429 AAAATGCTTTTCGGATCAGTATTAGCATTTGTTTTTCTGTTTTTGCCAAAGATGGTATCG K M L F G S V L A F V F L F L P K M V S K C F S D Q Y - H L F F C F C Q R W Y R E N A F R I S I S I C F S V F A K D G I . . . . . . 49369 GCTTTTAATAAGAACATACTTTAGGGAGGACAGAGAGAGATCCTTTACAGAAATAGTACA A F N K N I L - G G Q R E I L Y R N S T L L I R T Y F R E D R E R S F T E I V Q G F - - E H T L G R T E R D P L Q K - Y . . . . . . 49309 GAGATCAAAAAGCAATATTATGGTGCTGCCTGGAGGTTTTTTGATTTTATAAACAATTTA E I K K Q Y Y G A A W R F F D F I N N L R S K S N I M V L P G G F L I L - T I Y R D Q K A I L W C C L E V F - F Y K Q F . . . . . 49249 CAAGAGTTGTTTTTCCTACTAAAGATGCTTTTATTAGAGAGACTGGATT Q E L F F L L K M L L L E R L D K S C F S Y - R C F Y - R D W I T R V V F P T K D A F I R E T G Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-9_AGS-3_PPS_1 (50152 50130,49661 49346) (frame '1'; 336 bp, 112 residues) 1 LVRRKKRGFV SEHIETLEEI DMEYKELALE SGIENWGRVP ALNCTSSFIT DLADAVIEAL 61 PSTMAMSTST GTEEEVDNNP MQYFMKMLFG SVLAFVFLFL PKMVSAFNKN IL- AGS-4 (51139 50778) SCR (e 0.994) Exon 1 51139 50778 ( 362 n); score: 0.994 PGS (51139 50778) SGN-E206726+ 3-phase translation of AGS-4 (-strand): . . . . . . 51139 ATGACTCAAAGTTCAGTTTAGCCAAATTCTCTGTGCTTTTACGGATCATTCCATATTTTT M T Q S S V - P N S L C F Y G S F H I F - L K V Q F S Q I L C A F T D H S I F F D S K F S L A K F S V L L R I I P Y F . . . . . . 51079 CTCCTTTTTTTTTCCTTCCTCCTATTTTTAAAACAGCCTTTTCTTGTGAGGAAGTTTGTA L L F F S F L L F L K Q P F L V R K F V S F F F P S S Y F - N S L F L - G S L - S P F F F L P P I F K T A F S C E E V C . . . . . . 51019 GGGGTTTGAGACAGAATTTGACTACCCTTTTCCCCAATTTACTTCTATTTTGTTGTTTCA G V - D R I - L P F S P I Y F Y F V V S G F E T E F D Y P F P Q F T S I L L F H R G L R Q N L T T L F P N L L L F C C F . . . . . . 50959 CAAAATATTACGTTTCCCCCAGAAATGCCAAAGGTTCATCCCTCGATATTTCAGATTGAT Q N I T F P P E M P K V H P S I F Q I D K I L R F P Q K C Q R F I P R Y F R L M T K Y Y V S P R N A K G S S L D I S D - . . . . . . 50899 GTTAATTTTACCTGTATTATTTCAAATTTTATGTGACTTCTTCTCTACCAACTTCAGACT V N F T C I I S N F M - L L L Y Q L Q T L I L P V L F Q I L C D F F S T N F R L C - F Y L Y Y F K F Y V T S S L P T S D . . . . . . 50839 TTTTTACATTTCAGATATTCCTAACTCTTATCCAAACTCGGTGTTAATAATCCTTCATCA F L H F R Y S - L L S K L G V N N P S S F Y I S D I P N S Y P N S V L I I L H H F F T F Q I F L T L I Q T R C - - S F I . 50779 CA T Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-9_AGS-4_PPS_1 (51018 50779) (frame '2'; 240 bp, 80 residues) 1 GFETEFDYPF PQFTSILLFH KILRFPQKCQ RFIPRYFRLM LILPVLFQIL CDFFSTNFRL 61 FYISDIPNSY PNSVLIILHH >C08SLm0119I05.1-_PGL-9_AGS-4_PPS_2 (51137 50901) (frame '0'; 234 bp, 78 residues) 1 DSKFSLAKFS VLLRIIPYFS PFFFLPPIFK TAFSCEEVCR GLRQNLTTLF PNLLLFCCFT 61 KYYVSPRNAK GSSLDISD- 3-phase translation of AGS-4 (+strand): . . . . . . 50778 TGTGATGAAGGATTATTAACACCGAGTTTGGATAAGAGTTAGGAATATCTGAAATGTAAA C D E G L L T P S L D K S - E Y L K C K V M K D Y - H R V W I R V R N I - N V K - - R I I N T E F G - E L G I S E M - . . . . . . 50838 AAAGTCTGAAGTTGGTAGAGAAGAAGTCACATAAAATTTGAAATAATACAGGTAAAATTA K V - S W - R R S H I K F E I I Q V K L K S E V G R E E V T - N L K - Y R - N - K S L K L V E K K S H K I - N N T G K I . . . . . . 50898 ACATCAATCTGAAATATCGAGGGATGAACCTTTGGCATTTCTGGGGGAAACGTAATATTT T S I - N I E G - T F G I S G G N V I F H Q S E I S R D E P L A F L G E T - Y F N I N L K Y R G M N L W H F W G K R N I . . . . . . 50958 TGTGAAACAACAAAATAGAAGTAAATTGGGGAAAAGGGTAGTCAAATTCTGTCTCAAACC C E T T K - K - I G E K G S Q I L S Q T V K Q Q N R S K L G K R V V K F C L K P L - N N K I E V N W G K G - S N S V S N . . . . . . 51018 CCTACAAACTTCCTCACAAGAAAAGGCTGTTTTAAAAATAGGAGGAAGGAAAAAAAAAGG P T N F L T R K G C F K N R R K E K K R L Q T S S Q E K A V L K I G G R K K K G P Y K L P H K K R L F - K - E E G K K K . . . . . . 51078 AGAAAAATATGGAATGATCCGTAAAAGCACAGAGAATTTGGCTAAACTGAACTTTGAGTC R K I W N D P - K H R E F G - T E L - V E K Y G M I R K S T E N L A K L N F E S E K N M E - S V K A Q R I W L N - T L S . 51138 AT H Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (53962 53692) SCR (e 0.858) Exon 1 53962 53692 ( 271 n); score: 0.858 PGS (53962 53692) SGN-E212819+ PGS (53953 53692) SGN-E326311- PGS (53951 53794) SGN-E318957+ PGS (53954 53834) SGN-E376578- PGS (53954 53834) SGN-E393272- PGS (53954 53834) SGN-E210228- 3-phase translation of AGS-5 (-strand): . . . . . . 53962 TAGCAGATGAATAATACTCCCTCCGTTTAAAAAAGGATGGCCTAATTTGACTTGGAACGG - Q M N N T P S V - K R M A - F D L E R S R - I I L P P F K K G W P N L T W N G A D E - Y S L R L K K D G L I - L G T . . . . . . 53902 AGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAA S L R K E R R L F N L V V L N - S Y V K V - E K K E D F L I L W F - I K V M S N E F K K R K K T F - S C G S K L K L C Q . . . . . . 53842 TGTACCAAAATGTCCTTTAATCTTGTGGTCTTAAACATGTCATGTGGAAAGTTAAAGTTA C T K M S F N L V V L N M S C G K L K L V P K C P L I L W S - T C H V E S - S - M Y Q N V L - S C G L K H V M W K V K V . . . . . . 53782 AAGTGTTGCCAAAAAAGGAAATGGGTCATTCTTTTTGAAACAGACTAAAAAAGAAATGAG K C C Q K R K W V I L F E T D - K R N E S V A K K G N G S F F L K Q T K K E M R K V L P K K E M G H S F - N R L K K K - . . . . 53722 ACATTCTTTTTGTAAACAGAGGGAGTAATGG T F F L - T E G V M H S F C K Q R E - W D I L F V N R G S N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (+strand): . . . . . . 53692 CCATTACTCCCTCTGTTTACAAAAAGAATGTCTCATTTCTTTTTTAGTCTGTTTCAAAAA P L L P L F T K R M S H F F F S L F Q K H Y S L C L Q K E C L I S F L V C F K K I T P S V Y K K N V S F L F - S V S K . . . . . . 53752 GAATGACCCATTTCCTTTTTTGGCAACACTTTAACTTTAACTTTCCACATGACATGTTTA E - P I S F F G N T L T L T F H M T C L N D P F P F L A T L - L - L S T - H V - R M T H F L F W Q H F N F N F P H D M F . . . . . . 53812 AGACCACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTTAATTTAGAACCACAA R P Q D - R T F W Y I - H N F N L E P Q D H K I K G H F G T F D I T L I - N H K K T T R L K D I L V H L T - L - F R T T . . . . . . 53872 GATTAAAAAGTCTTCTTTCTTTTCTTAAACTCCGTTCCAAGTCAAATTAGGCCATCCTTT D - K V F F L F L N S V P S Q I R P S F I K K S S F F S - T P F Q V K L G H P F R L K S L L S F L K L R S K S N - A I L . . . . 53932 TTTAAACGGAGGGAGTATTATTCATCTGCTA F K R R E Y Y S S A L N G G S I I H L L F - T E G V L F I C Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (56216 56085,55538 55254) SCR (e 0.928 d 0.928 a 0.000,e 0.940) Exon 1 56216 56085 ( 132 n); score: 0.928 Intron 1 56084 55539 ( 546 n); Pd: 0.928 Pa: 0.000 Exon 2 55538 55254 ( 285 n); score: 0.940 PGS (56216 56085,55538 55254) SGN-E206007+ 3-phase translation of AGS-6 (-strand): . . . . . . 56216 TCTTTTTGGAAAGTTTTGATAGAAGAAAATCATCACATAGTAGATCATGGAAACAGGGAC S F W K V L I E E N H H I V D H G N R D L F G K F - - K K I I T - - I M E T G T F L E S F D R R K S S H S R S W K Q G . . . . . . 56156 GATCTCTCGACTTCTTAAACCGACTAAGGTTCCAAGTTCTAGTTTTTCCAGTTTCACTTC D L S T S - T D - G S K F - F F Q F H F I S R L L K P T K V P S S S F S S F T S R S L D F L N R L R F Q V L V F P V S L . . : . . . . 56096 TAACTCTTCCAT : TCCTGGCAGATGCTGCTCGCGGACAAGGTTAATGCCTCCTTTCCATTC - L F H : S W Q M L L A D K V N A S F P F N S S I : P G R C C S R T R L M P P F H S L T L P : F L A D A A R G Q G - C L L S I . . . . . . 55490 CTCACATGGTGGGCGAGAAATGAATTCTGATGAGCGGGAGATTACAATTTTATCTTCTGA L T W W A R N E F - - A G D Y N F I F - S H G G R E M N S D E R E I T I L S S E P H M V G E K - I L M S G R L Q F Y L L . . . . . . 55430 ACTCACTCTCAAAAAAAGCAGTGTAGTTGAGGGATTGTCTTTACATCGCCCAGTGCACAA T H S Q K K Q C S - G I V F T S P S A Q L T L K K S S V V E G L S L H R P V H K N S L S K K A V - L R D C L Y I A Q C T . . . . . . 55370 GAGAGATGTAGTTGGCAAGACGTTCTGCTCTGTTGGATTGTCTACATTTCCGGGGAGCAT E R C S W Q D V L L C W I V Y I S G E H R D V V G K T F C S V G L S T F P G S I R E M - L A R R S A L L D C L H F R G A . . . . . . 55310 CGTTGAGTCTTCTTCCCAGACAACTGAAGAAAAGATCGGAGTGCTACTTTTGAATCT R - V F F P D N - R K D R S A T F E S V E S S S Q T T E E K I G V L L L N S L S L L P R Q L K K R S E C Y F - I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-9_AGS-6_PPS_1 (56173 56085,55538 55256) (frame '2'; 372 bp, 124 residues) 1 IMETGTISRL LKPTKVPSSS FSSFTSNSSI PGRCCSRTRL MPPFHSSHGG REMNSDEREI 61 TILSSELTLK KSSVVEGLSL HRPVHKRDVV GKTFCSVGLS TFPGSIVESS SQTTEEKIGV 121 LLLN PGL 10 (+ strand): 61823 62044 AGS-1 (61823 62044) SCR (e 0.849) Exon 1 61823 62044 ( 222 n); score: 0.849 PGS (61823 62044) SGN-E204142- PGS (61823 62044) SGN-E205925- PGS (61823 62044) SGN-E375311- 3-phase translation of AGS-1 (+strand): . . . . . . 61823 CTTTCTACCAGGAGCGATTCAAGCATATTAATGGCCTAAAACAAAAATCAAACGGGGCCT L S T R S D S S I L M A - N K N Q T G P F L P G A I Q A Y - W P K T K I K R G L F Y Q E R F K H I N G L K Q K S N G A . . . . . . 61883 TTAAATTTGAATTTATCAATAACTTTTATATAATTGATTTCTTCTAATTTTCAATTGATA L N L N L S I T F I - L I S S N F Q L I - I - I Y Q - L L Y N - F L L I F N - - F K F E F I N N F Y I I D F F - F S I D . . . . . . 61943 ATATAATCATTCTTATTTTAAATTATTTTTAATGAGATATAGTACTCCAAATATGTCAAA I - S F L F - I I F N E I - Y S K Y V K Y N H S Y F K L F L M R Y S T P N M S N N I I I L I L N Y F - - D I V L Q I C Q . . . . . 62003 TTTCTTCTAATAATTTCTTCATTTTCATGAAAAGTTTACTTT F L L I I S S F S - K V Y F F F - - F L H F H E K F T I S S N N F F I F M K S L L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 62044 AAAGTAAACTTTTCATGAAAATGAAGAAATTATTAGAAGAAATTTGACATATTTGGAGTA K V N F S - K - R N Y - K K F D I F G V K - T F H E N E E I I R R N L T Y L E Y S K L F M K M K K L L E E I - H I W S . . . . . . 61984 CTATATCTCATTAAAAATAATTTAAAATAAGAATGATTATATTATCAATTGAAAATTAGA L Y L I K N N L K - E - L Y Y Q L K I R Y I S L K I I - N K N D Y I I N - K L E T I S H - K - F K I R M I I L S I E N - . . . . . . 61924 AGAAATCAATTATATAAAAGTTATTGATAAATTCAAATTTAAAGGCCCCGTTTGATTTTT R N Q L Y K S Y - - I Q I - R P R L I F E I N Y I K V I D K F K F K G P V - F L K K S I I - K L L I N S N L K A P F D F . . . . . 61864 GTTTTAGGCCATTAATATGCTTGAATCGCTCCTGGTAGAAAG V L G H - Y A - I A P G R K F - A I N M L E S L L V E C F R P L I C L N R S W - K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 67058 64784 AGS-1 (65188 64784) SCR (e 0.977) Exon 1 65188 64784 ( 405 n); score: 0.977 PGS (65188 64784) SGN-E216217- 3-phase translation of AGS-1 (-strand): . . . . . . 65188 ACTCCAAGATTTCATGAAGGTTGTTACATCCCCAGATTTTAGTTTGATGGATAAGGTGTT T P R F H E G C Y I P R F - F D G - G V L Q D F M K V V T S P D F S L M D K V L S K I S - R L L H P Q I L V - W I R C . . . . . . 65128 GGACTTGCAAAAAAGAGTCGAAGCTTTGACGTCCCAGTATCCTTTGCCTGGTTTATGAAA G L A K K S R S F D V P V S F A W F M K D L Q K R V E A L T S Q Y P L P G L - N W T C K K E S K L - R P S I L C L V Y E . . . . . . 65068 TGAAGGCCAAATTGCCTGATGGATGATAATTACATGCAAGCTAACCCTTTCGTCCTACTG - R P N C L M D D N Y M Q A N P F V L L E G Q I A - W M I I T C K L T L S S Y - M K A K L P D G - - L H A S - P F R P T . . . . . . 65008 AATTTTGCAATGTGTTGTTTAGAATACCTGAAGATCATCTATGTTTCTTCTCCTGGGAAA N F A M C C L E Y L K I I Y V S S P G K I L Q C V V - N T - R S S M F L L L G N E F C N V L F R I P E D H L C F F S W E . . . . . . 64948 TGTAGCAGACTCATAATCCATGGCTGTTGCAAAAACAATTGAATCAATTTCGAAACTATA C S R L I I H G C C K N N - I N F E T I V A D S - S M A V A K T I E S I S K L Y M - Q T H N P W L L Q K Q L N Q F R N Y . . . . . . 64888 TCATGGAAATTGTAGTTGAGTTCAGTCAATTTGTTGGAATTTGAATATCTACAATCCTAC S W K L - L S S V N L L E F E Y L Q S Y H G N C S - V Q S I C W N L N I Y N P T I M E I V V E F S Q F V G I - I S T I L . . . . . 64828 ATATGTGATTTCACAGTAAATGTCATGAGGCAGCGACAGAGTCGG I C D F T V N V M R Q R Q S R Y V I S Q - M S - G S D R V H M - F H S K C H E A A T E S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 64784 CCGACTCTGTCGCTGCCTCATGACATTTACTGTGAAATCACATATGTAGGATTGTAGATA P T L S L P H D I Y C E I T Y V G L - I R L C R C L M T F T V K S H M - D C R Y D S V A A S - H L L - N H I C R I V D . . . . . . 64844 TTCAAATTCCAACAAATTGACTGAACTCAACTACAATTTCCATGATATAGTTTCGAAATT F K F Q Q I D - T Q L Q F P - Y S F E I S N S N K L T E L N Y N F H D I V S K L I Q I P T N - L N S T T I S M I - F R N . . . . . . 64904 GATTCAATTGTTTTTGCAACAGCCATGGATTATGAGTCTGCTACATTTCCCAGGAGAAGA D S I V F A T A M D Y E S A T F P R R R I Q L F L Q Q P W I M S L L H F P G E E - F N C F C N S H G L - V C Y I S Q E K . . . . . . 64964 AACATAGATGATCTTCAGGTATTCTAAACAACACATTGCAAAATTCAGTAGGACGAAAGG N I D D L Q V F - T T H C K I Q - D E R T - M I F R Y S K Q H I A K F S R T K G K H R - S S G I L N N T L Q N S V G R K . . . . . . 65024 GTTAGCTTGCATGTAATTATCATCCATCAGGCAATTTGGCCTTCATTTCATAAACCAGGC V S L H V I I I H Q A I W P S F H K P G L A C M - L S S I R Q F G L H F I N Q A G - L A C N Y H P S G N L A F I S - T R . . . . . . 65084 AAAGGATACTGGGACGTCAAAGCTTCGACTCTTTTTTGCAAGTCCAACACCTTATCCATC K G Y W D V K A S T L F C K S N T L S I K D T G T S K L R L F F A S P T P Y P S Q R I L G R Q S F D S F L Q V Q H L I H . . . . . 65144 AAACTAAAATCTGGGGATGTAACAACCTTCATGAAATCTTGGAGT K L K S G D V T T F M K S W S N - N L G M - Q P S - N L G Q T K I W G C N N L H E I L E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (67058 66950,66872 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65193) SCR (e 0.881 d 0.920 a 0.992,e 1.000 d 0.997 a 0.999,e 1.000 d 0.998 a 0.996,e 1.000 d 1.000 a 0.996,e 1.000 d 0.980 a 0.982,e 1.000 d 0.997 a 0.994,e 1.000 d 0.999 a 0.998,e 1.000) Exon 1 67058 66950 ( 109 n); score: 0.881 Intron 1 66949 66873 ( 77 n); Pd: 0.920 Pa: 0.992 Exon 2 66872 66760 ( 113 n); score: 1.000 Intron 2 66759 66663 ( 97 n); Pd: 0.997 Pa: 0.999 Exon 3 66662 66540 ( 123 n); score: 1.000 Intron 3 66539 66207 ( 333 n); Pd: 0.998 Pa: 0.996 Exon 4 66206 66102 ( 105 n); score: 1.000 Intron 4 66101 65934 ( 168 n); Pd: 1.000 Pa: 0.996 Exon 5 65933 65847 ( 87 n); score: 1.000 Intron 5 65846 65770 ( 77 n); Pd: 0.980 Pa: 0.982 Exon 6 65769 65662 ( 108 n); score: 1.000 Intron 6 65661 65496 ( 166 n); Pd: 0.997 Pa: 0.994 Exon 7 65495 65423 ( 73 n); score: 1.000 Intron 7 65422 65346 ( 77 n); Pd: 0.999 Pa: 0.998 Exon 8 65345 65193 ( 153 n); score: 1.000 PGS (66864 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65193) SGN-E211668+ PGS (66621 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65221) SGN-E290328+ PGS (66833 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65435) SGN-E290503+ PGS (67058 66950,66872 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65486) SGN-E347645+ 3-phase translation of AGS-2 (-strand): . . . . . . 67058 TTACCTCATGGTGGCCACTTGTCCCATGGATTTATGACTCCAAAAAGACGGGTTTCAGGC L P H G G H L S H G F M T P K R R V S G Y L M V A T C P M D L - L Q K D G F Q A T S W W P L V P W I Y D S K K T G F R . . . . . : . 66998 ACCTCGATTTACTTTGAATCCATGCCTTATCGACTTGATGAATCTACAG : GTATTCTCGAT T S I Y F E S M P Y R L D E S T : G I L D P R F T L N P C L I D L M N L Q : V F S I H L D L L - I H A L S T - - I Y R : Y S R . . . . . . 66861 TATGAAATGCTTGAGAAAACAGCGAATCTTTTTCGCCCAAAGCTTATTATTGCTGGTGCA Y E M L E K T A N L F R P K L I I A G A M K C L R K Q R I F F A Q S L L L L V Q L - N A - E N S E S F S P K A Y Y C W C . . . . . : . 66801 AGTGCATATCCGCGTGATTTTGATTATCCTCGTTTGAGAAAG : ATAGCAGATGCTGTTGGA S A Y P R D F D Y P R L R K : I A D A V G V H I R V I L I I L V - E R : - Q M L L E K C I S A - F - L S S F E K : D S R C C W . . . . . . 66644 GCTTTCCTAATGATGGATATGGCTCATATCAGTGGGCTTGTAGCTGCTTCTGTACTTGCT A F L M M D M A H I S G L V A A S V L A L S - - W I W L I S V G L - L L L Y L L S F P N D G Y G S Y Q W A C S C F C T C . . . . . : . 66584 AATCCATTTGAATACTGTGACATTGTTACTACTACTACTCACAAG : TCTCTTAGAGGTCCT N P F E Y C D I V T T T T H K : S L R G P I H L N T V T L L L L L L T S : L L E V L - S I - I L - H C Y Y Y Y S Q : V S - R S . . . . . . 66191 AGAGGTGGAATGATCTTCTTCAAAAAAGATCCAGTTCTGGGAATGGATCTTGAATCTGCC R G G M I F F K K D P V L G M D L E S A E V E - S S S K K I Q F W E W I L N L P - R W N D L L Q K R S S S G N G S - I C . . . : . . . 66131 ATAAACAATGCTGTTTTTCCTGGTTTGCAG : GGTGGTCCTCATAATCACACAATTGGAGGA I N N A V F P G L Q : G G P H N H T I G G - T M L F F L V C R : V V L I I T Q L E D H K Q C C F S W F A : G W S S - S H N W R . . . . . . : 65903 CTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGAATTTAAGGTTTATCAGAACCAG : GTG L A V C L K H A K S P E F K V Y Q N Q : V - L F A - S M P N H L N L R F I R T R : W T S C L L E A C Q I T - I - G L S E P : G . . . . . . 65766 GTTGCCAACTGTAGAGCTCTTGCAAGCCGATTAATGGAATTAGGCTACAAGCTGGTCTCA V A N C R A L A S R L M E L G Y K L V S L P T V E L L Q A D - W N - A T S W S Q G C Q L - S S C K P I N G I R L Q A G L . . . . . : . 65706 GGAGGGAGCGACAATCATTTGGTTCTTGTGGATTTGCGGCCCATG : GGAATTGATGGTGCT G G S D N H L V L V D L R P M : G I D G A E G A T I I W F L W I C G P W : E L M V L R R E R Q S F G S C G F A A H : G N - W C . . . . . . : 65480 AGAGTGGAGAAAATACTCGACATGGCATCAATCACTCTCAATAAGAATTCAGTGCCTG : GT R V E K I L D M A S I T L N K N S V P : G E W R K Y S T W H Q S L S I R I Q C L : V - S G E N T R H G I N H S Q - E F S A W : . . . . . . 65343 GATAAAAGCGCACTAGTACCGGGTGGCATCCGCATAGGCTCACCAGCCATGACCACTCGA D K S A L V P G G I R I G S P A M T T R I K A H - Y R V A S A - A H Q P - P L E - - K R T S T G W H P H R L T S H D H S . . . . . . 65283 GGTTTTACAGAGAAGGAATTTGTATCAGTTGCAGATTTTATTCACGAGGGTGTGCAAATT G F T E K E F V S V A D F I H E G V Q I V L Q R R N L Y Q L Q I L F T R V C K L R F Y R E G I C I S C R F Y S R G C A N . . . . 65223 ACCCTTGAAGCCAAGAAGTCCGTCTCTACTA T L E A K K S V S T P L K P R S P S L L Y P - S Q E V R L Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-11_AGS-2_PPS_1 (67058 66950,66872 66760,66662 66540,66206 66102,65933 65847,65769 65662,65495 65423,65345 65194) (frame '1'; 870 bp, 290 residues) 1 LPHGGHLSHG FMTPKRRVSG TSIYFESMPY RLDESTGILD YEMLEKTANL FRPKLIIAGA 61 SAYPRDFDYP RLRKIADAVG AFLMMDMAHI SGLVAASVLA NPFEYCDIVT TTTHKSLRGP 121 RGGMIFFKKD PVLGMDLESA INNAVFPGLQ GGPHNHTIGG LAVCLKHAKS PEFKVYQNQV 181 VANCRALASR LMELGYKLVS GGSDNHLVLV DLRPMGIDGA RVEKILDMAS ITLNKNSVPG 241 DKSALVPGGI RIGSPAMTTR GFTEKEFVSV ADFIHEGVQI TLEAKKSVST PGL 12 (- strand): 68952 67441 AGS-1 (68952 68872,68785 68539,67624 67441) SCR (e 1.000 d 0.840 a 0.859,e 1.000 d 0.997 a 0.999,e 1.000) Exon 1 68952 68872 ( 81 n); score: 1.000 Intron 1 68871 68786 ( 86 n); Pd: 0.840 Pa: 0.859 Exon 2 68785 68539 ( 247 n); score: 1.000 Intron 2 68538 67625 ( 914 n); Pd: 0.997 Pa: 0.999 Exon 3 67624 67441 ( 184 n); score: 1.000 PGS (68952 68872,68785 68539,67624 67441) SGN-E203041+ 3-phase translation of AGS-1 (-strand): . . . . . . 68952 TTTTCTTCACCTTGTGTTGTTCCTATATATTCCCAGAGTTCTACAAACGCAAAACTGAAA F S S P C V V P I Y S Q S S T N A K L K F L H L V L F L Y I P R V L Q T Q N - K F F T L C C S Y I F P E F Y K R K T E . . . : . . . 68892 ATCTAGTGAAATTTCAATAAG : AAAACTGAATTTTGAATTGAAGGGTTGCTGTTAATTAGT I - - N F N K : K T E F - I E G L L L I S S S E I S I R : K L N F E L K G C C - L V N L V K F Q - : E N - I L N - R V A V N - . . . . . . 68746 TGCATCATGGAAGCTTGTTGTGGAGCTGCGGTTATGAGTTCTCTTCAGCAGCCTGTTTGG C I M E A C C G A A V M S S L Q Q P V W A S W K L V V E L R L - V L F S S L F G L H H G S L L W S C G Y E F S S A A C L . . . . . . 68686 GTTAAAGGGTCAGCTTTTCCTTCAAAAGGGGTTGCTGGTATTAATGTAAATTCGAGTCGG V K G S A F P S K G V A G I N V N S S R L K G Q L F L Q K G L L V L M - I R V G G - R V S F S F K R G C W Y - C K F E S . . . . . . 68626 GTAAAGTTATGCTCTGTCAAGCCCTGTAGAGCAACTCCAACTGAATGGAGCTTGATAACA V K L C S V K P C R A T P T E W S L I T - S Y A L S S P V E Q L Q L N G A - - Q G K V M L C Q A L - S N S N - M E L D N . . . : . . . 68566 GAAAGGCCTACTTCTTCTGCTCCTGAAG : GTGCTGGGAGCAGCTTTGAAGACTATGGGTTG E R P T S S A P E : G A G S S F E D Y G L K G L L L L L L K : V L G A A L K T M G C R K A Y F F C S - R : C W E Q L - R L W V . . . . . . 67592 CATGAAGCTGATCCTGATGTTCGTACTATTATTGACAAAGAGAAGCAGCGTCAGTTTAGG H E A D P D V R T I I D K E K Q R Q F R M K L I L M F V L L L T K R S S V S L G A - S - S - C S Y Y Y - Q R E A A S V - . . . . . . 67532 AGCTTAGAACTTATTGCCTCTGAGAATTTCACATCTCGAGCAGTGATGGAAGCAGTTGGT S L E L I A S E N F T S R A V M E A V G A - N L L P L R I S H L E Q - W K Q L V E L R T Y C L - E F H I S S S D G S S W . . . . 67472 TCTTGCCTTACCAACAAATATTCTGAAGGGCT S C L T N K Y S E G L A L P T N I L K G F L P Y Q Q I F - R A Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-12_AGS-1_PPS_1 (68770 68539,67624 67443) (frame '1'; 414 bp, 138 residues) 1 IEGLLLISCI MEACCGAAVM SSLQQPVWVK GSAFPSKGVA GINVNSSRVK LCSVKPCRAT 61 PTEWSLITER PTSSAPEGAG SSFEDYGLHE ADPDVRTIID KEKQRQFRSL ELIASENFTS 121 RAVMEAVGSC LTNKYSEG AGS-2 (68873 68573) SCR (e 0.987) Exon 1 68873 68573 ( 301 n); score: 0.987 PGS (68873 68573) SGN-E200162+ 3-phase translation of AGS-2 (-strand): . . . . . . 68873 AGGTTAAACGATTTATAATTCTTGTAAAAAATCTTCAGTTGAATCCCCTGTTTCCTAGTT R L N D L - F L - K I F S - I P C F L V G - T I Y N S C K K S S V E S P V S - L V K R F I I L V K N L Q L N P L F P S . . . . . . 68813 ACAATCTTTTTCTTCTTCCTATTTGCAGAAAACTGAATTTTGAATTGAAGGGTTGCTGTT T I F F F F L F A E N - I L N - R V A V Q S F S S S Y L Q K T E F - I E G L L L Y N L F L L P I C R K L N F E L K G C C . . . . . . 68753 AATTAGTTGCATCATGGAAGCTTGTTGTGGAGCTGCGGTTATGAGTTCTCTTCAGCAGCC N - L H H G S L L W S C G Y E F S S A A I S C I M E A C C G A A V M S S L Q Q P - L V A S W K L V V E L R L - V L F S S . . . . . . 68693 TGTTTGGGTTAAAGGGTCAGCTTTTCCTTCAAAAGGGGTTGCTGGTATTAATGTAAATTC C L G - R V S F S F K R G C W Y - C K F V W V K G S A F P S K G V A G I N V N S L F G L K G Q L F L Q K G L L V L M - I . . . . . . 68633 GAGTCGGGTAAAGTTATGCTCTGTCAAGCCCTGTAGAGCAACTCCAACTGAATGGAGCTT E S G K V M L C Q A L - S N S N - M E L S R V K L C S V K P C R A T P T E W S L R V G - S Y A L S S P V E Q L Q L N G A . 68573 G Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-12_AGS-2_PPS_1 (68770 68573) (frame '2'; 198 bp, 66 residues) 1 IEGLLLISCI MEACCGAAVM SSLQQPVWVK GSAFPSKGVA GINVNSSRVK LCSVKPCRAT 61 PTEWSL 3-phase translation of AGS-2 (+strand): . . . . . . 68573 CAAGCTCCATTCAGTTGGAGTTGCTCTACAGGGCTTGACAGAGCATAACTTTACCCGACT Q A P F S W S C S T G L D R A - L Y P T K L H S V G V A L Q G L T E H N F T R L S S I Q L E L L Y R A - Q S I T L P D . . . . . . 68633 CGAATTTACATTAATACCAGCAACCCCTTTTGAAGGAAAAGCTGACCCTTTAACCCAAAC R I Y I N T S N P F - R K S - P F N P N E F T L I P A T P F E G K A D P L T Q T S N L H - Y Q Q P L L K E K L T L - P K . . . . . . 68693 AGGCTGCTGAAGAGAACTCATAACCGCAGCTCCACAACAAGCTTCCATGATGCAACTAAT R L L K R T H N R S S T T S F H D A T N G C - R E L I T A A P Q Q A S M M Q L I Q A A E E N S - P Q L H N K L P - C N - . . . . . . 68753 TAACAGCAACCCTTCAATTCAAAATTCAGTTTTCTGCAAATAGGAAGAAGAAAAAGATTG - Q Q P F N S K F S F L Q I G R R K R L N S N P S I Q N S V F C K - E E E K D C L T A T L Q F K I Q F S A N R K K K K I . . . . . . 68813 TAACTAGGAAACAGGGGATTCAACTGAAGATTTTTTACAAGAATTATAAATCGTTTAACC - L G N R G F N - R F F T R I I N R L T N - E T G D S T E D F L Q E L - I V - P V T R K Q G I Q L K I F Y K N Y K S F N . 68873 T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (- strand): 80277 73894 AGS-1 (75097 73894) SCR (e 0.842) Exon 1 75097 73894 (1204 n); score: 0.842 PGS (74162 73894) SGN-E207598- PGS (74355 73897) SGN-E211090+ PGS (74148 73897) SGN-E389613- PGS (74118 73897) SGN-E370622- PGS (73991 73899) SGN-E329886+ PGS (74356 73908) SGN-E206285- PGS (74164 73908) SGN-E206496- PGS (74355 73952) SGN-E205773+ PGS (74860 74279) SGN-E271645- PGS (75097 74662) SGN-E205772+ 3-phase translation of AGS-1 (-strand): . . . . . . 75097 TTGTTGGGTTTTATTTGCCCTGATTTCTTAGCATAAATAGGTTTTCCTTTTAGGAAAAGG L L G F I C P D F L A - I G F P F R K R C W V L F A L I S - H K - V F L L G K G V G F Y L P - F L S I N R F S F - E K . . . . . . 75037 TTTTGGATTGGCTAATCCTTTTTCTGGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGC F W I G - S F F W - E K V - D S I N R G F G L A N P F S G R K R F R T L - I E A V L D W L I L F L V G K G L G L Y K - R . . . . . . 74977 ATGTTCCTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGG M F L L T - L A F T M - S - G L - E F W C S F - L N - H S Q C S L K G F E S F G H V P S N L I S I H N V V L R A L R V L . . . . . . 74917 TTAGGGGGAGAATTTATGAGTCACAAGTTTGATACGTTATCACTTGTGTGAACCTCCCAT L G G E F M S H K F D T L S L V - T S H - G E N L - V T S L I R Y H L C E P P M V R G R I Y E S Q V - Y V I T C V N L P . . . . . . 74857 GTATTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATA V F R V N W L R L F L S V F C T L I F I Y S E - I G - G C F S L Y F V L S Y L - C I P S E L V E V V S L C I L Y S H I Y . . . . . . 74797 GTGGATTTCTCATCTCCTTTGTGAACGTATGTCGATTGACCGAACCACGTTAAATCTGTG V D F S S P L - T Y V D - P N H V K S V W I S H L L C E R M S I D R T T L N L C S G F L I S F V N V C R L T E P R - I C . . . . . . 74737 TGTCTTTTGGTATATTTCTCATTGTCTTCTTACTCGTGGTCTTTCGAGGTCTGCTTTGCT C L L V Y F S L S S Y S W S F E V C F A V F W Y I S H C L L T R G L S R S A L L V S F G I F L I V F L L V V F R G L L C . . . . . . 74677 AGCTTCCGCATTTACATCTCTTATTTTTGGTCCTAAAAAGTGGTATCAGAGCCAGATTCA S F R I Y I S Y F W S - K V V S E P D S A S A F T S L I F G P K K W Y Q S Q I Q - L P H L H L L F L V L K S G I R A R F . . . . . . 74617 ATGACGGAGTTAGGTTCAGTGGTTCGATAATCAATGATTGAATCAAGTTAGAAAGAGGTG M T E L G S V V R - S M I E S S - K E V - R S - V Q W F D N Q - L N Q V R K R C N D G V R F S G S I I N D - I K L E R G . . . . . . 74557 TTCATCTTGACGGGTGTAGTTCTAGCCGCAACCTTTTTGACAGTAATGAAGATTTTGTCG F I L T G V V L A A T F L T V M K I L S S S - R V - F - P Q P F - Q - - R F C R V H L D G C S S S R N L F D S N E D F V . . . . . . 74497 GAGAAATTGTTTCACAGAGGTTCTCTGTGTTGAGACACAAATTTTGCAAAGGAGATTATG E K L F H R G S L C - D T N F A K E I M R N C F T E V L C V E T Q I L Q R R L W G E I V S Q R F S V L R H K F C K G D Y . . . . . . 74437 GAGAGGAGAAGCAAGTTGTTGAATATTAAGTAAAGAAGGTGGACAAATTTAATTTGTCAG E R R S K L L N I K - R R W T N L I C Q R G E A S C - I L S K E G G Q I - F V R G E E K Q V V E Y - V K K V D K F N L S . . . . . . 74377 AAATTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCTGATTTCTTACCATAAAT K F R P R G R F V G F Y L P - F L T I N N S G Q G G D L L G F I C P D F L P - I E I Q A K G E I C W V L F A L I S Y H K . . . . . . 74317 AGGTTTTCCTTTTAGGAAAAGGTTTTGGATTGACTAATCTTTTTTCTGGTAGGAAAAGGT R F S F - E K V L D - L I F F L V G K G G F P F R K R F W I D - S F F W - E K V - V F L L G K G F G L T N L F S G R K R . . . . . . 74257 TTAAGACTCTATAAATAGAGGCATGTTCTTTCTAACTTAATTAGCATTCACAATGTAGTC L R L Y K - R H V L S N L I S I H N V V - D S I N R G M F F L T - L A F T M - S F K T L - I E A C S F - L N - H S Q C S . . . . . . 74197 TTAAGGGCTTTGAGAGTTTTGGTTAGGGGGAAAATTTATGAGTCACAAGCTTGATACGTT L R A L R V L V R G K I Y E S Q A - Y V - G L - E F W L G G K F M S H K L D T L L K G F E S F G - G E N L - V T S L I R . . . . . . 74137 ATCACTTGTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGT I T C V N L P C I P S E L V E V V S L C S L V - T S H V F R V N W L R L F L S V Y H L C E P P M Y S E - I G - G C F S L . . . . . . 74077 ATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGATGTAGGTCGATTG I L Y S H I Y S G L L I S F V D V G R L F C T L I F I V D C S S P L W M - V D - Y F V L S Y L - W I A H L L C G C R S I . . . . . . 74017 ACCGAACCACGTTAAATTTGTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTG T E P R - I C V S F G I F L V V F L L V P N H V K F V C L L V Y F S L S S Y S W D R T T L N L C V F W Y I S R C L L T R . . . . . . 73957 GTCTTTCGAGATCTGCTTTGCAAGCTTCCGCATTTACATCTGCTTATTTTCGATCCTAAC V F R D L L C K L P H L H L L I F D P N S F E I C F A S F R I Y I C L F S I L T G L S R S A L Q A S A F T S A Y F R S - . 73897 AATA N I Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 73894 TATTGTTAGGATCGAAAATAAGCAGATGTAAATGCGGAAGCTTGCAAAGCAGATCTCGAA Y C - D R K - A D V N A E A C K A D L E I V R I E N K Q M - M R K L A K Q I S K L L G S K I S R C K C G S L Q S R S R . . . . . . 73954 AGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACACAAATTTAACGTGGTT R P R V R R Q R E I Y Q K T H K F N V V D H E - E D N E K Y T K R H T N L T W F K T T S K K T T R N I P K D T Q I - R G . . . . . . 74014 CGGTCAATCGACCTACATCCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACA R S I D L H P Q R R - A I H Y K Y E S T G Q S T Y I H K G D E Q S T I N M R V Q S V N R P T S T K E M S N P L - I - E Y . . . . . . 74074 AAATACAGAGAGAAACAACCTCAACCAATTCACTCGGAATACATGGGAGGTTCACACAAG K Y R E K Q P Q P I H S E Y M G G S H K N T E R N N L N Q F T R N T W E V H T S K I Q R E T T S T N S L G I H G R F T Q . . . . . . 74134 TGATAACGTATCAAGCTTGTGACTCATAAATTTTCCCCCTAACCAAAACTCTCAAAGCCC - - R I K L V T H K F S P - P K L S K P D N V S S L - L I N F P P N Q N S Q S P V I T Y Q A C D S - I F P L T K T L K A . . . . . . 74194 TTAAGACTACATTGTGAATGCTAATTAAGTTAGAAAGAACATGCCTCTATTTATAGAGTC L R L H C E C - L S - K E H A S I Y R V - D Y I V N A N - V R K N M P L F I E S L K T T L - M L I K L E R T C L Y L - S . . . . . . 74254 TTAAACCTTTTCCTACCAGAAAAAAGATTAGTCAATCCAAAACCTTTTCCTAAAAGGAAA L N L F L P E K R L V N P K P F P K R K - T F S Y Q K K D - S I Q N L F L K G K L K P F P T R K K I S Q S K T F S - K E . . . . . . 74314 ACCTATTTATGGTAAGAAATCAGGGCAAATAAAACCCAACAAATCTCCCCCTTGGCCTGA T Y L W - E I R A N K T Q Q I S P L A - P I Y G K K S G Q I K P N K S P P W P E N L F M V R N Q G K - N P T N L P L G L . . . . . . 74374 ATTTCTGACAAATTAAATTTGTCCACCTTCTTTACTTAATATTCAACAACTTGCTTCTCC I S D K L N L S T F F T - Y S T T C F S F L T N - I C P P S L L N I Q Q L A S P N F - Q I K F V H L L Y L I F N N L L L . . . . . . 74434 TCTCCATAATCTCCTTTGCAAAATTTGTGTCTCAACACAGAGAACCTCTGTGAAACAATT S P - S P L Q N L C L N T E N L C E T I L H N L L C K I C V S T Q R T S V K Q F L S I I S F A K F V S Q H R E P L - N N . . . . . . 74494 TCTCCGACAAAATCTTCATTACTGTCAAAAAGGTTGCGGCTAGAACTACACCCGTCAAGA S P T K S S L L S K R L R L E L H P S R L R Q N L H Y C Q K G C G - N Y T R Q D F S D K I F I T V K K V A A R T T P V K . . . . . . 74554 TGAACACCTCTTTCTAACTTGATTCAATCATTGATTATCGAACCACTGAACCTAACTCCG - T P L S N L I Q S L I I E P L N L T P E H L F L T - F N H - L S N H - T - L R M N T S F - L D S I I D Y R T T E P N S . . . . . . 74614 TCATTGAATCTGGCTCTGATACCACTTTTTAGGACCAAAAATAAGAGATGTAAATGCGGA S L N L A L I P L F R T K N K R C K C G H - I W L - Y H F L G P K I R D V N A E V I E S G S D T T F - D Q K - E M - M R . . . . . . 74674 AGCTAGCAAAGCAGACCTCGAAAGACCACGAGTAAGAAGACAATGAGAAATATACCAAAA S - Q S R P R K T T S K K T M R N I P K A S K A D L E R P R V R R Q - E I Y Q K K L A K Q T S K D H E - E D N E K Y T K . . . . . . 74734 GACACACAGATTTAACGTGGTTCGGTCAATCGACATACGTTCACAAAGGAGATGAGAAAT D T Q I - R G S V N R H T F T K E M R N T H R F N V V R S I D I R S Q R R - E I R H T D L T W F G Q S T Y V H K G D E K . . . . . . 74794 CCACTATAAATATGAGAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTCGGA P L - I - E Y K I Q R E T T S T N S L G H Y K Y E S T K Y R E K Q P Q P I H S E S T I N M R V Q N T E R N N L N Q F T R . . . . . . 74854 ATACATGGGAGGTTCACACAAGTGATAACGTATCAAACTTGTGACTCATAAATTCTCCCC I H G R F T Q V I T Y Q T C D S - I L P Y M G G S H K - - R I K L V T H K F S P N T W E V H T S D N V S N L - L I N S P . . . . . . 74914 CTAACCAAAACTCTCAAAGCCCTTAAGACTACATTGTGAATGCTAATTAAGTTAGAAGGA L T K T L K A L K T T L - M L I K L E G - P K L S K P L R L H C E C - L S - K E P N Q N S Q S P - D Y I V N A N - V R R . . . . . . 74974 ACATGCCTCTATTTATAGAGTCCTAAACCTTTTCCTACCAGAAAAAGGATTAGCCAATCC T C L Y L - S P K P F P T R K R I S Q S H A S I Y R V L N L F L P E K G L A N P N M P L F I E S - T F S Y Q K K D - P I . . . . . . 75034 AAAACCTTTTCCTAAAAGGAAAACCTATTTATGCTAAGAAATCAGGGCAAATAAAACCCA K T F S - K E N L F M L R N Q G K - N P K P F P K R K T Y L C - E I R A N K T Q Q N L F L K G K P I Y A K K S G Q I K P . 75094 ACAA T Q N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (80074 80054,75103 75000,74121 73897) SCR (e 0.762 d 0.386 a 0.000,e 0.803 d 0.000 a 0.000,e 0.893) Exon 1 80074 80054 ( 21 n); score: 0.762 Intron 1 80053 75104 (4950 n); Pd: 0.386 Pa: 0.000 Exon 2 75103 75000 ( 104 n); score: 0.803 Intron 2 74999 74122 ( 878 n); Pd: 0.000 Pa: 0.000 Exon 3 74121 73897 ( 225 n); score: 0.893 PGS (80074 80054,75103 75000,74121 73897) SGN-E543331+ 3-phase translation of AGS-2 (-strand): . . . : . . . 80074 ATTAATTGTAGTAATGTAAAG : CAATAATTGTTGGGTTTTATTTGCCCTGATTTCTTAGCA I N C S N V K : Q - L L G F I C P D F L A L I V V M - S : N N C W V L F A L I S - H - L - - C K : A I I V G F Y L P - F L S . . . . . . 75064 TAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGGATTGGCTAATCCTTTTTCTGGTAGGAA - I G F P F R K R F W I G - S F F W - E K - V F L L G K G F G L A N P F S G R K I N R F S F - E K V L D W L I L F L V G . : . . . . . 75004 AAGGT : TCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTC K V : P M Y S E - I G - G C F S L Y F V L R : F P C I P S E L V E V V S L C I L Y S K G : S H V F R V N W L R L F L S V F C T . . . . . . 74066 TCATATTTATAGTGGATTGCTCATCTCCTTTGTGGATGTAGGTCGATTGACCGAACCACG S Y L - W I A H L L C G C R S I D R T T H I Y S G L L I S F V D V G R L T E P R L I F I V D C S S P L W M - V D - P N H . . . . . . 74006 TTAAATTTGTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGA L N L C V F W Y I S R C L L T R G L S R - I C V S F G I F L V V F L L V V F R D V K F V C L L V Y F S L S S Y S W S F E . . . . . 73946 TCTGCTTTGCAAGCTTCCGCATTTACATCTGCTTATTTTCGATCCTAACA S A L Q A S A F T S A Y F R S - L L C K L P H L H L L I F D P N I C F A S F R I Y I C L F S I L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (75117 75002,74296 73988) SCR (e 0.841 d 0.000 a 0.000,e 0.932) Exon 1 75117 75002 ( 116 n); score: 0.841 Intron 1 75001 74297 ( 705 n); Pd: 0.000 Pa: 0.000 Exon 2 74296 73988 ( 309 n); score: 0.932 PGS (75117 75002,74296 73988) SGN-E243194- 3-phase translation of AGS-3 (-strand): . . . . . . 75117 GTTTTGGACATGAGCAATAATTGTTGGGTTTTATTTGCCCTGATTTCTTAGCATAAATAG V L D M S N N C W V L F A L I S - H K - F W T - A I I V G F Y L P - F L S I N R F G H E Q - L L G F I C P D F L A - I . . . . . . : 75057 GTTTTCCTTTTAGGAAAAGGTTTTGGATTGGCTAATCCTTTTTCTGGTAGGAAAAG : GTTT V F L L G K G F G L A N P F S G R K R : F F S F - E K V L D W L I L F L V G K : G F G F P F R K R F W I G - S F F W - E K : V . . . . . . 74292 TGGATTGACTAATCTTTTTTCTGGTAGGAAAAGGTTTAAGACTCTATAAATAGAGGCATG W I D - S F F W - E K V - D S I N R G M G L T N L F S G R K R F K T L - I E A C L D - L I F F L V G K G L R L Y K - R H . . . . . . 74232 TTCTTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTA F F L T - L A F T M - S - G L - E F W L S F - L N - H S Q C S L K G F E S F G - V L S N L I S I H N V V L R A L R V L V . . . . . . 74172 GGGGGAAAATTTATGAGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTA G G K F M S H K L D T L S L V - T S H V G E N L - V T S L I R Y H L C E P P M Y R G K I Y E S Q A - Y V I T C V N L P C . . . . . . 74112 TTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTG F R V N W L R L F L S V F C T L I F I V S E - I G - G C F S L Y F V L S Y L - W I P S E L V E V V S L C I L Y S H I Y S . . . . . . 74052 GATTGCTCATCTCCTTTGTGGATGTAGGTCGATTGACCGAACCACGTTAAATTTGTGTGT D C S S P L W M - V D - P N H V K F V C I A H L L C G C R S I D R T T L N L C V G L L I S F V D V G R L T E P R - I C V . 73992 CTTTT L F S F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (79015 78451) SCR (e 0.955) Exon 1 79015 78451 ( 565 n); score: 0.955 PGS (79015 78451) SGN-E325909- 3-phase translation of AGS-4 (-strand): . . . . . . 79015 TTTTCACGATATTGCTGCTGCAATATCACATTTGAGGCATGGAAAGTAGTAAATGTCTTT F S R Y C C C N I T F E A W K V V N V F F H D I A A A I S H L R H G K - - M S F F T I L L L Q Y H I - G M E S S K C L . . . . . . 78955 TCCAACATGTCCTCATCTTTTATAGTCTCCCCACATAATTTTAACGGGGAGGTTATCCTG S N M S S S F I V S P H N F N G E V I L P T C P H L L - S P H I I L T G R L S - F Q H V L I F Y S L P T - F - R G G Y P . . . . . . 78895 AATACAACAGAGTTGTATTCAATTACGATCTTAAAATCTTGAAACTGTAAATGCATCCAC N T T E L Y S I T I L K S - N C K C I H I Q Q S C I Q L R S - N L E T V N A S T E Y N R V V F N Y D L K I L K L - M H P . . . . . . 78835 TCATAACGAGCTCTTGGCAACACTGTTGTCTTTAGGTGGTCATATCTCCCCTTTAAATCA S - R A L G N T V V F R W S Y L P F K S H N E L L A T L L S L G G H I S P L N Q L I T S S W Q H C C L - V V I S P L - I . . . . . . 78775 GTCCACAATTCAAGTAGATTTTTTACCGTCAGATATTCAATCTTCAGGCCCTCATCAAGA V H N S S R F F T V R Y S I F R P S S R S T I Q V D F L P S D I Q S S G P H Q D S P Q F K - I F Y R Q I F N L Q A L I K . . . . . . 78715 TGATGACGAAGGAAAATCATAGCCTTCGCCTTATCTTGACTTGTTGCTTCATTTCTCTGA - - R R K I I A F A L S - L V A S F L - D D E G K S - P S P Y L D L L L H F S E M M T K E N H S L R L I L T C C F I S L . . . . . . 78655 GTAATAGTGGCATCACGTCCTTTAGCAGCCAAGTGAATCTCAGCATCGAGTACCAATGAA V I V A S R P L A A K - I S A S S T N E - - W H H V L - Q P S E S Q H R V P M K S N S G I T S F S S Q V N L S I E Y Q - . . . . . . 78595 AGATAATTCTTTCCAGAAATATCTAATGCCACAAACTCAAGTTTGGATAAATTCGACATA R - F F P E I S N A T N S S L D K F D I D N S F Q K Y L M P Q T Q V W I N S T - K I I L S R N I - C H K L K F G - I R H . . . . . . 78535 ATAAAATTATGAGAGAATATGTGAATCAAATAAAAATATTTATATAATACCTTTGCAAGT I K L - E N M - I K - K Y L Y N T F A S - N Y E R I C E S N K N I Y I I P L Q V N K I M R E Y V N Q I K I F I - Y L C K . . . 78475 AGCAACTTCATGCTGATAACGTGTT S N F M L I T C A T S C - - R V - Q L H A D N V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 78451 AACACGTTATCAGCATGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGA N T L S A - S C Y L Q R Y Y I N I F I - T R Y Q H E V A T C K G I I - I F L F D H V I S M K L L L A K V L Y K Y F Y L . . . . . . 78511 TTCACATATTCTCTCATAATTTTATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCAT F T Y S L I I L L C R I Y P N L S L W H S H I L S - F Y Y V E F I Q T - V C G I I H I F S H N F I M S N L S K L E F V A . . . . . . 78571 TAGATATTTCTGGAAAGAATTATCTTTCATTGGTACTCGATGCTGAGATTCACTTGGCTG - I F L E R I I F H W Y S M L R F T W L R Y F W K E L S F I G T R C - D S L G C L D I S G K N Y L S L V L D A E I H L A . . . . . . 78631 CTAAAGGACGTGATGCCACTATTACTCAGAGAAATGAAGCAACAAGTCAAGATAAGGCGA L K D V M P L L L R E M K Q Q V K I R R - R T - C H Y Y S E K - S N K S R - G E A K G R D A T I T Q R N E A T S Q D K A . . . . . . 78691 AGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGG R L - F S F V I I L M R A - R L N I - R G Y D F P S S S S - - G P E D - I S D G K A M I F L R H H L D E G L K I E Y L T . . . . . . 78751 TAAAAAATCTACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGACAA - K I Y L N C G L I - R G D M T T - R Q K K S T - I V D - F K G E I - P P K D N V K N L L E L W T D L K G R Y D H L K T . . . . . . 78811 CAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACAGTTTCAAGATTTTAAGATCG Q C C Q E L V M S G C I Y S F K I L R S S V A K S S L - V D A F T V S R F - D R T V L P R A R Y E W M H L Q F Q D F K I . . . . . . 78871 TAATTGAATACAACTCTGTTGTATTCAGGATAACCTCCCCGTTAAAATTATGTGGGGAGA - L N T T L L Y S G - P P R - N Y V G R N - I Q L C C I Q D N L P V K I M W G D V I E Y N S V V F R I T S P L K L C G E . . . . . . 78931 CTATAAAAGATGAGGACATGTTGGAAAAGACATTTACTACTTTCCATGCCTCAAATGTGA L - K M R T C W K R H L L L S M P Q M - Y K R - G H V G K D I Y Y F P C L K C D T I K D E D M L E K T F T T F H A S N V . . . 78991 TATTGCAGCAGCAATATCGTGAAAA Y C S S N I V K I A A A I S - K I L Q Q Q Y R E Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-13_AGS-4_PPS_1 (78453 79013) (frame '0'; 561 bp, 187 residues) 1 HVISMKLLLA KVLYKYFYLI HIFSHNFIMS NLSKLEFVAL DISGKNYLSL VLDAEIHLAA 61 KGRDATITQR NEATSQDKAK AMIFLRHHLD EGLKIEYLTV KNLLELWTDL KGRYDHLKTT 121 VLPRARYEWM HLQFQDFKIV IEYNSVVFRI TSPLKLCGET IKDEDMLEKT FTTFHASNVI 181 LQQQYRE AGS-5 (80277 79901) SCR (e 0.875) Exon 1 80277 79901 ( 377 n); score: 0.875 PGS (80277 79901) SGN-E206250- PGS (80210 79923) SGN-E332350- 3-phase translation of AGS-5 (-strand): . . . . . . 80277 AAGGTGTGCCCATGTGAATTCTCAATGATTTTGGGCATCATATCAAATTCGGGATGGCCC K V C P C E F S M I L G I I S N S G W P R C A H V N S Q - F W A S Y Q I R D G P G V P M - I L N D F G H H I K F G M A . . . . . . 80217 AACCGGTCATGTCAAATGATTAAATCATTAAAATTAGTTAACCTTTTATTTACTACGGCA N R S C Q M I K S L K L V N L L F T T A T G H V K - L N H - N - L T F Y L L R H Q P V M S N D - I I K I S - P F I Y Y G . . . . . . 80157 TGTGATTCAACTATACTTATACTTGTATAGTACAACCCATAAGAAAGTGCAGGTAATTTT C D S T I L I L V - Y N P - E S A G N F V I Q L Y L Y L Y S T T H K K V Q V I F M - F N Y T Y T C I V Q P I R K C R - F . . . . . . 80097 TCATGCACGGTTTTCTTCTTTACATTAATTGTAGTAATGTAAAGGTATTAGTCCTTTCCT S C T V F F F T L I V V M - R Y - S F P H A R F S S L H - L - - C K G I S P F L F M H G F L L Y I N C S N V K V L V L S . . . . . . 80037 TCATTAGTCGTGTCAACATGATAGCCATTTTGGCGAATAACTTTGAAACTTAATAAGTTT S L V V S T - - P F W R I T L K L N K F H - S C Q H D S H F G E - L - N L I S F F I S R V N M I A I L A N N F E T - - V . . . . . . 79977 CTTTGAGACTTACTACAATATAATGCATTATCAGTGCTTAATATTGTCTCTCCAGGTAGT L - D L L Q Y N A L S V L N I V S P G S F E T Y Y N I M H Y Q C L I L S L Q V V S L R L T T I - C I I S A - Y C L S R - . . 79917 AAGAATTTTGTACTACC K N F V L R I L Y Y - E F C T T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (+strand): . . . . . . 79901 GGTAGTACAAAATTCTTACTACCTGGAGAGACAATATTAAGCACTGATAATGCATTATAT G S T K F L L P G E T I L S T D N A L Y V V Q N S Y Y L E R Q Y - A L I M H Y I - Y K I L T T W R D N I K H - - C I I . . . . . . 79961 TGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCAT C S K S Q R N L L S F K V I R Q N G Y H V V S L K E T Y - V S K L F A K M A I M L - - V S K K L I K F Q S Y S P K W L S . . . . . . 80021 GTTGACACGACTAATGAAGGAAAGGACTAATACCTTTACATTACTACAATTAATGTAAAG V D T T N E G K D - Y L Y I T T I N V K L T R L M K E R T N T F T L L Q L M - R C - H D - - R K G L I P L H Y Y N - C K . . . . . . 80081 AAGAAAACCGTGCATGAAAAATTACCTGCACTTTCTTATGGGTTGTACTATACAAGTATA K K T V H E K L P A L S Y G L Y Y T S I R K P C M K N Y L H F L M G C T I Q V - E E N R A - K I T C T F L W V V L Y K Y . . . . . . 80141 AGTATAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAACTAATTTTAATGATTTAATC S I V E S H A V V N K R L T N F N D L I V - L N H M P - - I K G - L I L M I - S K Y S - I T C R S K - K V N - F - - F N . . . . . . 80201 ATTTGACATGACCGGTTGGGCCATCCCGAATTTGATATGATGCCCAAAATCATTGAGAAT I - H D R L G H P E F D M M P K I I E N F D M T G W A I P N L I - C P K S L R I H L T - P V G P S R I - Y D A Q N H - E . . 80261 TCACATGGGCACACCTT S H G H T H M G T P F T W A H L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 81577 83313 AGS-1 (81577 82814) SCR (e 0.936) Exon 1 81577 82814 (1238 n); score: 0.936 PGS (81577 82283) SGN-E331947+ PGS (82034 82724) SGN-E353811+ PGS (82151 82784) SGN-E205887+ PGS (82189 82814) SGN-E209835+ PGS (82189 82762) SGN-E209830+ PGS (82249 82789) SGN-E299938+ 3-phase translation of AGS-1 (+strand): . . . . . . 81577 AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAA K - C N K M K I L S Q N L F T N V D R E N N A T R - R F - A K I C S R M - T E K I M Q Q D E D F E P K S V H E C R Q R . . . . . . 81637 ATGATTGGCCAAAATGGAAGGATACAATTCAAGCTGAATTATCTTCACTAGAAAAAAGTG M I G Q N G R I Q F K L N Y L H - K K V - L A K M E G Y N S S - I I F T R K K - N D W P K W K D T I Q A E L S S L E K S . . . . . . 81697 AAGTTTTTGGACCAATAATCCGAACACCTGGAGGTATCAAGCCAGTGGAGTACAAATGGG K F L D Q - S E H L E V S S Q W S T N G S F W T N N P N T W R Y Q A S G V Q M G E V F G P I I R T P G G I K P V E Y K W . . . . . . 81757 TTTTTGTACAAAAAAGAAATGAGAAAGGTAAAGTCATGAGATATAAGGCCTCGTTGCTCA F L Y K K E M R K V K S - D I R P R C S F C T K K K - E R - S H E I - G L V A Q V F V Q K R N E K G K V M R Y K A S L L . . . . . . 81817 AAGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGC K F F S K T W H - L Y G D I F S S G R C S F S Q R P G I D Y M E T Y S P V V D A K V F L K D L A L I I W R H I L Q W - M . . . . . . 81877 AATCACCTTCAGATATCTCATAAATCTTGCAGTTCATGAAAAACATAAAATGCATCTAAT N H L Q I S H K S C S S - K T - N A S N I T F R Y L I N L A V H E K H K M H L M Q S P S D I S - I L Q F M K N I K C I - . . . . . . 81937 GGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCC G R C H S L S I W L I G P Q H F H E N S D V V T A Y L Y G S L D H N I F M K I P W T L S Q P I Y M A H W T T T F S - K F . . . . . . 81997 TGAAGTATTCAAAGTACCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGAT - S I Q S T - S I Q R F K R N L F N K D E V F K V P E A Y K D S R E T C S I K I L K Y S K Y L K H T K I Q E K L V Q - R . . . . . . 82057 TCAGAAATCTCCGTATGGATTGAAAGAATCAGGAAGGATGTGGTACAATCGTTTGAGTGA S E I S V W I E R I R K D V V Q S F E - Q K S P Y G L K E S G R M W Y N R L S E F R N L R M D - K N Q E G C G T I V - V . . . . . . 82117 ATATTTGTTAAAGAAAGGGTACAAAAATGACCCAATTTGTCGCTGCATTTTCATTAAACG I F V K E R V Q K - P N L S L H F H - T Y L L K K G Y K N D P I C R C I F I K R N I C - R K G T K M T Q F V A A F S L N . . . . . . 82177 GTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGACAC V G V - I C N N S C V C - - F E H H - H S G S E F V I I A V Y V D D L N I I D T G R G L N L - - - L C M L M I - T S L T . . . . . . 82237 TCATAAAGATCTTTTAGAAGCCGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCT S - R S F R S R - V S E K R I - N E R S H K D L L E A V E C L K K E F E M K D L L I K I F - K P L S V - K K N L K - K I . . . . . . 82297 CGGCAAGACAAATTTTTTCTTGGCCTACAGATTGAGAATTTGTCGAACGGAATACTTGTT R Q D K F F L G L Q I E N L S N G I L V G K T N F F L A Y R L R I C R T E Y L F S A R Q I F S W P T D - E F V E R N T C . . . . . . 82357 CATCAATCAACGTACACAAAAAAGATACTAAAGTGTTTTACATGGATAACACACATCCAT H Q S T Y T K K I L K C F T W I T H I H I N Q R T Q K R Y - S V L H G - H T S I S S I N V H K K D T K V F Y M D N T H P . . . . . . 82417 TGAGTACTCCAATGGTGGTAAGATCGCTTTACATCAATACACATTCATTTAGACCTTAAG - V L Q W W - D R F T S I H I H L D L K E Y S N G G K I A L H Q Y T F I - T L R L S T P M V V R S L Y I N T H S F R P - . . . . . . 82477 AGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTACCTTAGTGCGATTGGGGCACTAA R M M K S F L V M K L L T L V R L G H - E - - R A S W - - N S L P - C D W G T N E N D E E L L G D E T P Y L S A I G A L . . . . . . 82537 TGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTAGAAAGAT C T L L T I L D Q I S V L Q - V Y - K D V P C - Q Y S T R Y L F C S K S T R K I M Y L A N N T R P D I C F A V S L L E R . . . . . . 82597 TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCTATATCTTT S V P P Q Q K D I G M V L N T Y F Y I F Q F L P N K K T L E W C - T H T S I S L F S S S P T K R H W N G V K H I L L Y L . . . . . . 82657 GGGGGACCATGGACATGGGTTTATTCTATTCCAATAATTCCAAGTCAGAACTGATTGATT G G P W T W V Y S I P I I P S Q N - L I G D H G H G F I L F Q - F Q V R T D - L W G T M D M G L F Y S N N S K S E L I D . . . . . . 82717 ACGCAGATGCAGGGTATTTATCTGATCCGCATAAAACTTGATCACAAATAGGCTATTTGT T Q M Q G I Y L I R I K L D H K - A I C R R C R V F I - S A - N L I T N R L F V Y A D A G Y L S D P H K T - S Q I G Y L . . . . 82777 TTACATGTGAAGACACGACAATATCTTGGAAATCAATG L H V K T R Q Y L G N Q Y M - R H D N I L E I N F T C E D T T I S W K S M Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-14_AGS-1_PPS_1 (81803 82387) (frame '2'; 582 bp, 194 residues) 1 GLVAQSFSQR PGIDYMETYS PVVDAITFRY LINLAVHEKH KMHLMDVVTA YLYGSLDHNI 61 FMKIPEVFKV PEAYKDSRET CSIKIQKSPY GLKESGRMWY NRLSEYLLKK GYKNDPICRC 121 IFIKRSGSEF VIIAVYVDDL NIIDTHKDLL EAVECLKKEF EMKDLGKTNF FLAYRLRICR 181 TEYLFINQRT QKRY- >C08SLm0119I05.1+_PGL-14_AGS-1_PPS_2 (82476 82757) (frame '0'; 279 bp, 93 residues) 1 ENDEELLGDE TPYLSAIGAL MYLANNTRPD ICFAVSLLER FSSSPTKRHW NGVKHILLYL 61 WGTMDMGLFY SNNSKSELID YADAGYLSDP HKT- 3-phase translation of AGS-1 (-strand): . . . . . . 82814 CATTGATTTCCAAGATATTGTCGTGTCTTCACATGTAAACAAATAGCCTATTTGTGATCA H - F P R Y C R V F T C K Q I A Y L - S I D F Q D I V V S S H V N K - P I C D Q L I S K I L S C L H M - T N S L F V I . . . . . . 82754 AGTTTTATGCGGATCAGATAAATACCCTGCATCTGCGTAATCAATCAGTTCTGACTTGGA S F M R I R - I P C I C V I N Q F - L G V L C G S D K Y P A S A - S I S S D L E K F Y A D Q I N T L H L R N Q S V L T W . . . . . . 82694 ATTATTGGAATAGAATAAACCCATGTCCATGGTCCCCCAAAGATATAGAAGTATGTGTTT I I G I E - T H V H G P P K I - K Y V F L L E - N K P M S M V P Q R Y R S M C L N Y W N R I N P C P W S P K D I E V C V . . . . . . 82634 AACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTTCTAGTAGACTTACTGC N T I P M S F C W G G T E S F - - T Y C T P F Q C L F V G E E L N L S S R L T A - H H S N V F L L G R N - I F L V D L L . . . . . . 82574 AAAACAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCAATCGCACTAAG K T D I W S S I V S K V H - C P N R T K K Q I S G R V L L A R Y I S A P I A L R Q N R Y L V E Y C - Q G T L V P Q S H - . . . . . . 82514 GTAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTAAGGTCTAAATGAATGTGT V R S F I T K K L F I I L L R S K - M C - G V S S P R S S S S F S - G L N E C V G K E F H H Q E A L H H S L K V - M N V . . . . . . 82454 ATTGATGTAAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGTGTTATCCATGTA I D V K R S Y H H W S T Q W M C V I H V L M - S D L T T I G V L N G C V L S M - Y - C K A I L P P L E Y S M D V C Y P C . . . . . . 82394 AAACACTTTAGTATCTTTTTTGTGTACGTTGATTGATGAACAAGTATTCCGTTCGACAAA K H F S I F F V Y V D - - T S I P F D K N T L V S F L C T L I D E Q V F R S T N K T L - Y L F C V R - L M N K Y S V R Q . . . . . . 82334 TTCTCAATCTGTAGGCCAAGAAAAAATTTGTCTTGCCGAGATCTTTCATTTCAAATTCTT F S I C R P R K N L S C R D L S F Q I L S Q S V G Q E K I C L A E I F H F K F F I L N L - A K K K F V L P R S F I S N S . . . . . . 82274 TTTTCAGACACTCAACGGCTTCTAAAAGATCTTTATGAGTGTCAATGATGTTCAAATCAT F S D T Q R L L K D L Y E C Q - C S N H F Q T L N G F - K I F M S V N D V Q I I F F R H S T A S K R S L - V S M M F K S . . . . . . 82214 CAACATACACAGCTATTATTACAAATTCAGACCCCGACCGTTTAATGAAAATGCAGCGAC Q H T Q L L L Q I Q T P T V - - K C S D N I H S Y Y Y K F R P R P F N E N A A T S T Y T A I I T N S D P D R L M K M Q R . . . . . . 82154 AAATTGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAAACGATTGTACCACA K L G H F C T L S L T N I H S N D C T T N W V I F V P F L - Q I F T Q T I V P H Q I G S F L Y P F F N K Y S L K R L Y H . . . . . . 82094 TCCTTCCTGATTCTTTCAATCCATACGGAGATTTCTGAATCTTTATTGAACAAGTTTCTC S F L I L S I H T E I S E S L L N K F L P S - F F Q S I R R F L N L Y - T S F S I L P D S F N P Y G D F - I F I E Q V S . . . . . . 82034 TTGAATCTTTGTATGCTTCAGGTACTTTGAATACTTCAGGAATTTTCATGAAAATGTTGT L N L C M L Q V L - I L Q E F S - K C C - I F V C F R Y F E Y F R N F H E N V V L E S L Y A S G T L N T S G I F M K M L . . . . . . 81974 GGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCCATTAGATGCATTTTATGTTTTT G P M S H I D R L - Q R P L D A F Y V F V Q - A I - I G C D N V H - M H F M F F W S N E P Y R - A V T T S I R C I L C F . . . . . . 81914 CATGAACTGCAAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATG H E L Q D L - D I - R - L H L P L E N M M N C K I Y E I S E G D C I Y H W R I C S - T A R F M R Y L K V I A S T T G E Y . . . . . . 81854 TCTCCATATAATCAATGCCAGGTCTTTGAGAAAAACTTTGAGCAACGAGGCCTTATATCT S P Y N Q C Q V F E K N F E Q R G L I S L H I I N A R S L R K T L S N E A L Y L V S I - S M P G L - E K L - A T R P Y I . . . . . . 81794 CATGACTTTACCTTTCTCATTTCTTTTTTGTACAAAAACCCATTTGTACTCCACTGGCTT H D F T F L I S F L Y K N P F V L H W L M T L P F S F L F C T K T H L Y S T G L S - L Y L S H F F F V Q K P I C T P L A . . . . . . 81734 GATACCTCCAGGTGTTCGGATTATTGGTCCAAAAACTTCACTTTTTTCTAGTGAAGATAA D T S R C S D Y W S K N F T F F - - R - I P P G V R I I G P K T S L F S S E D N - Y L Q V F G L L V Q K L H F F L V K I . . . . . . 81674 TTCAGCTTGAATTGTATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAAC F S L N C I L P F W P I I S L S T F V N S A - I V S F H F G Q S F L C L H S - T I Q L E L Y P S I L A N H F S V Y I R E . . . . 81614 AGATTTTGGCTCAAAATCTTCATCTTGTTGCATTATTT R F W L K I F I L L H Y D F G S K S S S C C I I Q I L A Q N L H L V A L F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-14_AGS-1_PPS_1 (81931 81665) (frame '2'; 264 bp, 88 residues) 1 MHFMFFMNCK IYEISEGDCI YHWRICLHII NARSLRKTLS NEALYLMTLP FSFLFCTKTH 61 LYSTGLIPPG VRIIGPKTSL FSSEDNSA- AGS-2 (82139 82176,82293 82729,83079 83313) SCR (e 0.737 d 0.000 a 0.000,e 0.815 d 0.944 a 0.726,e 0.944) Exon 1 82139 82176 ( 38 n); score: 0.737 Intron 1 82177 82292 ( 116 n); Pd: 0.000 Pa: 0.000 Exon 2 82293 82729 ( 437 n); score: 0.815 Intron 2 82730 83078 ( 349 n); Pd: 0.944 Pa: 0.726 Exon 3 83079 83313 ( 235 n); score: 0.944 PGS (82139 82176,82293 82736) SGN-E208613+ PGS (82402 82729,83079 83313) SGN-E211563+ PGS (82429 82729,83079 83308) SGN-E201786+ PGS (83083 83313) SGN-E200850+ PGS (83248 83313) SGN-E391539- 3-phase translation of AGS-2 (+strand): . . . . : . . 82139 AAAAATGACCCAATTTGTCGCTGCATTTTCATTAAACG : ATCTCGGCAAGACAAATTTTTT K N D P I C R C I F I K R : S R Q D K F F K M T Q F V A A F S L N : D L G K T N F F K - P N L S L H F H - T : I S A R Q I F . . . . . . 82315 CTTGGCCTACAGATTGAGAATTTGTCGAACGGAATACTTGTTCATCAATCAACGTACACA L G L Q I E N L S N G I L V H Q S T Y T L A Y R L R I C R T E Y L F I N Q R T Q S W P T D - E F V E R N T C S S I N V H . . . . . . 82375 AAAAAGATACTAAAGTGTTTTACATGGATAACACACATCCATTGAGTACTCCAATGGTGG K K I L K C F T W I T H I H - V L Q W W K R Y - S V L H G - H T S I E Y S N G G K K D T K V F Y M D N T H P L S T P M V . . . . . . 82435 TAAGATCGCTTTACATCAATACACATTCATTTAGACCTTAAGAGAATGATGAAGAGCTTC - D R F T S I H I H L D L K R M M K S F K I A L H Q Y T F I - T L R E - - R A S V R S L Y I N T H S F R P - E N D E E L . . . . . . 82495 TTGGTGATGAAACTCCTTACCTTAGTGCGATTGGGGCACTAATGTACCTTGCTAACAATA L V M K L L T L V R L G H - C T L L T I W - - N S L P - C D W G T N V P C - Q Y L G D E T P Y L S A I G A L M Y L A N N . . . . . . 82555 CTCGACCAGATATCTGTTTTGCAGTAAGTCTACTAGAAAGATTCAGTTCCTCCCCAACAA L D Q I S V L Q - V Y - K D S V P P Q Q S T R Y L F C S K S T R K I Q F L P N K T R P D I C F A V S L L E R F S S S P T . . . . . . 82615 AAAGACATTGGAATGGTGTTAAACACATACTTCTATATCTTTGGGGGACCATGGACATGG K D I G M V L N T Y F Y I F G G P W T W K T L E W C - T H T S I S L G D H G H G K R H W N G V K H I L L Y L W G T M D M . . . . . . : 82675 GTTTATTCTATTCCAATAATTCCAAGTCAGAACTGATTGATTACGCAGATGCAGG : GGTAT V Y S I P I I P S Q N - L I T Q M Q : G Y F I L F Q - F Q V R T D - L R R C R : G I G L F Y S N N S K S E L I D Y A D A G : V . . . . . . 83084 TTATCTGATCCGCATAAAACTTGATCACAAATAGGCTATTTGTTTACATGTGGAGACACG L S D P H K T - S Q I G Y L F T C G D T Y L I R I K L D H K - A I C L H V E T R F I - S A - N L I T N R L F V Y M W R H . . . . . . 83144 ACAATATCTTGGAAATCAATGAAACAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAA T I S W K S M K Q T L V A T S S N H A E Q Y L G N Q - N K R W - P L L Q I M Q K D N I L E I N E T N V G S H F F K S C R . . . . . . 83204 ATTAAAGTCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCAT I K V I H E A S R E C V W L R S M T H H L K S S M K Q V E S A S G - D Q - P I I N - S H P - S K S R V R L V E I N D P S . . . . . 83264 ATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATATCAACCACAAT I Q E M C G F S L K K N I S T T F R K C V V F L - K R I Y Q P Q Y S G N V W F F F E K E Y I N H N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-14_AGS-2_PPS_1 (82476 82729,83079 83091) (frame '0'; 264 bp, 88 residues) 1 ENDEELLGDE TPYLSAIGAL MYLANNTRPD ICFAVSLLER FSSSPTKRHW NGVKHILLYL 61 WGTMDMGLFY SNNSKSELID YADAGVFI- >C08SLm0119I05.1+_PGL-14_AGS-2_PPS_2 (83108 83311) (frame '1'; 204 bp, 68 residues) 1 SQIGYLFTCG DTTISWKSMK QTLVATSSNH AEIKVIHEAS RECVWLRSMT HHIQEMCGFS 61 LKKNISTT PGL 15 (- strand): 86283 84863 AGS-1 (85672 84863) SCR (e 0.939) Exon 1 85672 84863 ( 810 n); score: 0.939 PGS (85264 84863) SGN-E354195+ PGS (85505 85020) SGN-E203362- PGS (85672 85069) SGN-E546563- 3-phase translation of AGS-1 (-strand): . . . . . . 85672 AAATGTTATTTGTAGTATTGATGATTAGACAAACTTGGGAACCTTGTAAAGGTACCAGTT K C Y L - Y - - L D K L G N L V K V P V N V I C S I D D - T N L G T L - R Y Q F M L F V V L M I R Q T W E P C K G T S . . . . . . 85612 TCTTAATTGACTATTGCAGGGTTCTTGCTTGAGTATTGTAGATGAAACAAACCCAGGGAC S - L T I A G F L L E Y C R - N K P R D L N - L L Q G S C L S I V D E T N P G T F L I D Y C R V L A - V L - M K Q T Q G . . . . . . 85552 CTAGTAGAGGTACCAGGCTCTCATGATGAGGAGCCAGTTGATTGCCAGCTGGAGACGGTA L V E V P G S H D E E P V D C Q L E T V - - R Y Q A L M M R S Q L I A S W R R Y P S R G T R L S - - G A S - L P A G D G . . . . . . 85492 CAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCAGCCAATGGC Q K V G A H F P M A S E S V T F P A N G R K - V H T S R W R Q K V - L F Q P M A T E S R C T L P D G V R K C D F S S Q W . . . . . . 85432 AAAGAGGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTTCTAAACATTTTGTGCA K E V - E S D L P I - K A L F - T F C A K R F R K V T C P Y K R H F S K H F V Q Q R G L G K - L A H I K G T F L N I L C . . . . . . 85372 ACTTTTGCAACTTGATAAAAAATTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAG T F A T - - K I F K N S C K G Y Y K A K L L Q L D K K F S R T L A K A T T K Q R N F C N L I K N F Q E L L Q R L L Q S K . . . . . . 85312 GCGGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTTGTCTAGTTGTTTAGGAAT A E L F Q E Q Q Q Y L E L F V - L F R N R N Y S K N N S N I W S F L S S C L G M G G I I P R T T A I S G A F C L V V - E . . . . . . 85252 GCATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTACAAAGGAATTGGTGTGTTG A F S C S - T V N H S - I Y K G I G V L H S L V L K L - T I P E S T K E L V C C C I L L F L N C K P F L N L Q R N W C V . . . . . . 85192 TGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAG C - K S R L S R W D S L V G R L F S T - V K S L G C P G G I A - W V D C F L L R V L K V - V V Q V G - L S G - I V F Y L . . . . . . 85132 GCTTGTTAAGCAATAGTGGACTATTTCTTAACTGTAAGATTGATAACTCTTTCTTACGTT A C - A I V D Y F L T V R L I T L S Y V L V K Q - W T I S - L - D - - L F L T F G L L S N S G L F L N C K I D N S F L R . . . . . . 85072 TGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAATCCTGT W C N R V L L L L L K I S E N D - K S C G V I V F Y F C F - R L V K T I E N P V L V - S C F T F A F E D - - K R L K I L . . . . . . 85012 GAGACAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTTCACGTAAAATCATCGTGTT E T G R G F T P L S K E V F T - N H R V R Q V V V L L P - A R R F S R K I I V L - D R S W F Y S L K Q G G F H V K S S C . . . . . . 84952 GATTTTACTGCATTTAACTTTCTTTTTATTCATTAGTGTAGTAAGGGGCCTGGTCCATTA D F T A F N F L F I H - C S K G P G P L I L L H L T F F L F I S V V R G L V H Y - F Y C I - L S F Y S L V - - G A W S I . . . 84892 CTTGTTAAGTGAAGGTATATATTCTATCAG L V K - R Y I F Y Q L L S E G I Y S I T C - V K V Y I L S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-15_AGS-1_PPS_1 (85449 85228) (frame '2'; 219 bp, 73 residues) 1 LFQPMAKRFR KVTCPYKRHF SKHFVQLLQL DKKFSRTLAK ATTKQRRNYS KNNSNIWSFL 61 SSCLGMHSLV LKL- 3-phase translation of AGS-1 (+strand): . . . . . . 84863 CTGATAGAATATATACCTTCACTTAACAAGTAATGGACCAGGCCCCTTACTACACTAATG L I E Y I P S L N K - W T R P L T T L M - - N I Y L H L T S N G P G P L L H - - D R I Y T F T - Q V M D Q A P Y Y T N . . . . . . 84923 AATAAAAAGAAAGTTAAATGCAGTAAAATCAACACGATGATTTTACGTGAAAACCTCCTT N K K K V K C S K I N T M I L R E N L L I K R K L N A V K S T R - F Y V K T S L E - K E S - M Q - N Q H D D F T - K P P . . . . . . 84983 GCTTAAGGGAGTAAAACCACGACCTGTCTCACAGGATTTTCAATCGTTTTCACTAATCTT A - G S K T T T C L T G F S I V F T N L L K G V K P R P V S Q D F Q S F S L I F C L R E - N H D L S H R I F N R F H - S . . . . . . 85043 CAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACAGT Q K Q K - N T I T P N V R K S Y Q S Y S K S K S K T R L H Q T - E R V I N L T V S K A K V K H D Y T K R K K E L S I L Q . . . . . . 85103 TAAGAAATAGTCCACTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCT - E I V H Y C L T S L S R K Q S T H - A K K - S T I A - Q A - V E N N L P T K L L R N S P L L L N K P K - K T I Y P L S . . . . . . 85163 ATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTGTAGATTCAGGA I P P G Q P R L L T Q H T N S F V D S G S H L D N L D F - H N T P I P L - I Q E Y P T W T T - T F N T T H Q F L C R F R . . . . . . 85223 ATGGTTTACAGTTTAAGAACAAGAGAATGCATTCCTAAACAACTAGACAAAAAGCTCCAG M V Y S L R T R E C I P K Q L D K K L Q W F T V - E Q E N A F L N N - T K S S R N G L Q F K N K R M H S - T T R Q K A P . . . . . . 85283 ATATTGCTGTTGTTCTTGGAATAATTCCGCCTTTGCTTTGTAGTAGCCTTTGCAAGAGTT I L L L F L E - F R L C F V V A F A R V Y C C C S W N N S A F A L - - P L Q E F D I A V V L G I I P P L L C S S L C K S . . . . . . 85343 CTTGAAAATTTTTTATCAAGTTGCAAAAGTTGCACAAAATGTTTAGAAAAGTGCCTTTTA L E N F L S S C K S C T K C L E K C L L L K I F Y Q V A K V A Q N V - K S A F Y S - K F F I K L Q K L H K M F R K V P F . . . . . . 85403 TATGGGCAAGTCACTTTCCTAAACCTCTTTGCCATTGGCTGGAAAAGTCACACTTTCTGA Y G Q V T F L N L F A I G W K S H T F - M G K S L S - T S L P L A G K V T L S D I W A S H F P K P L C H W L E K S H F L . . . . . . 85463 CGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAATCAACTGGCTC R H R E V C T Y F L Y R L Q L A I N W L A I G K C A P T F C T V S S W Q S T G S T P S G S V H L L S V P S P A G N Q L A . . . . . . 85523 CTCATCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTACAATACTC L I M R A W Y L Y - V P G F V S S T I L S S - E P G T S T R S L G L F H L Q Y S P H H E S L V P L L G P W V C F I Y N T . . . . . . 85583 AAGCAAGAACCCTGCAATAGTCAATTAAGAAACTGGTACCTTTACAAGGTTCCCAAGTTT K Q E P C N S Q L R N W Y L Y K V P K F S K N P A I V N - E T G T F T R F P S L Q A R T L Q - S I K K L V P L Q G S Q V . . . 85643 GTCTAATCATCAATACTACAAATAACATTT V - S S I L Q I T F S N H Q Y Y K - H C L I I N T T N N I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-15_AGS-1_PPS_1 (85348 85602) (frame '0'; 252 bp, 84 residues) 1 KFFIKLQKLH KMFRKVPFIW ASHFPKPLCH WLEKSHFLTP SGSVHLLSVP SPAGNQLAPH 61 HESLVPLLGP WVCFIYNTQA RTLQ- AGS-2 (86283 85954) SCR (e 0.864) Exon 1 86283 85954 ( 330 n); score: 0.864 PGS (86283 85954) SGN-E549133+ PGS (86282 85967) SGN-E309004+ 3-phase translation of AGS-2 (-strand): . . . . . . 86283 AGTGGTAAAGAGGCAGAGATTGCTATACTCAAAGCAGAACTGCTTACTGCACAAAGTGAG S G K E A E I A I L K A E L L T A Q S E V V K R Q R L L Y S K Q N C L L H K V R W - R G R D C Y T Q S R T A Y C T K - . . . . . . 86223 GGACCTGGTTCTTCAGTGGTTCAAGCTCTGGAGAAAGAGAATACTAAGTTGAAGGCGAAG G P G S S V V Q A L E K E N T K L K A K D L V L Q W F K L W R K R I L S - R R R G T W F F S G S S S G E R E Y - V E G E . . . . . . 86163 ATAACTGCCCTGCAAGAAAAGGCCATCAAAGACAATGATGCTGTCAATGCACGACTCACT I T A L Q E K A I K D N D A V N A R L T - L P C K K R P S K T M M L S M H D S L D N C P A R K G H Q R Q - C C Q C T T H . . . . . . 86103 CTTGTTATCCAATCCCTGTCTCATCCTCCTCCCTCTTCCGAGTTTGTTGAACCCCCCTTG L V I Q S L S H P P P S S E F V E P P L L L S N P C L I L L P L P S L L N P P C S C Y P I P V S S S S L F R V C - T P L . . . . . . 86043 TGTCAAATTTTTTTTGTGGCTTTTCAATGTGTTGAAGAATGTTCAGTTTGGTTCTAATGT C Q I F F V A F Q C V E E C S V W F - C V K F F L W L F N V L K N V Q F G S N V V S N F F C G F S M C - R M F S L V L M . . . 85983 ATTTATGTTATTATGGCGTACTGGTTAATT I Y V I M A Y W L I F M L L W R T G - Y L C Y Y G V L V N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-15_AGS-2_PPS_1 (86283 85987) (frame '1'; 294 bp, 98 residues) 1 SGKEAEIAIL KAELLTAQSE GPGSSVVQAL EKENTKLKAK ITALQEKAIK DNDAVNARLT 61 LVIQSLSHPP PSSEFVEPPL CQIFFVAFQC VEECSVWF- 3-phase translation of AGS-2 (+strand): . . . . . . 85954 AATTAACCAGTACGCCATAATAACATAAATACATTAGAACCAAACTGAACATTCTTCAAC N - P V R H N N I N T L E P N - T F F N I N Q Y A I I T - I H - N Q T E H S S T L T S T P - - H K Y I R T K L N I L Q . . . . . . 86014 ACATTGAAAAGCCACAAAAAAAATTTGACACAAGGGGGGTTCAACAAACTCGGAAGAGGG T L K S H K K N L T Q G G F N K L G R G H - K A T K K I - H K G G S T N S E E G H I E K P Q K K F D T R G V Q Q T R K R . . . . . . 86074 AGGAGGATGAGACAGGGATTGGATAACAAGAGTGAGTCGTGCATTGACAGCATCATTGTC R R M R Q G L D N K S E S C I D S I I V G G - D R D W I T R V S R A L T A S L S E E D E T G I G - Q E - V V H - Q H H C . . . . . . 86134 TTTGATGGCCTTTTCTTGCAGGGCAGTTATCTTCGCCTTCAACTTAGTATTCTCTTTCTC F D G L F L Q G S Y L R L Q L S I L F L L M A F S C R A V I F A F N L V F S F S L - W P F L A G Q L S S P S T - Y S L S . . . . . . 86194 CAGAGCTTGAACCACTGAAGAACCAGGTCCCTCACTTTGTGCAGTAAGCAGTTCTGCTTT Q S L N H - R T R S L T L C S K Q F C F R A - T T E E P G P S L C A V S S S A L P E L E P L K N Q V P H F V Q - A V L L . . . 86254 GAGTATAGCAATCTCTGCCTCTTTACCACT E Y S N L C L F T T S I A I S A S L P - V - Q S L P L Y H Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-15_AGS-2_PPS_1 (86002 86211) (frame '1'; 207 bp, 69 residues) 1 TFFNTLKSHK KNLTQGGFNK LGRGRRMRQG LDNKSESCID SIIVFDGLFL QGSYLRLQLS 61 ILFLQSLNH- PGL 16 (- strand): 93268 92445 AGS-1 (93268 92445) SCR (e 0.935) Exon 1 93268 92445 ( 824 n); score: 0.935 PGS (92845 92445) SGN-E354195+ PGS (93086 92601) SGN-E203362- PGS (93268 92650) SGN-E546563- 3-phase translation of AGS-1 (-strand): . . . . . . 93268 TGAAAACTTATTTGAAACTGTTATTTGTAGTTTTGATGATTTGACAAACTTGGGAACCTT - K L I - N C Y L - F - - F D K L G N L E N L F E T V I C S F D D L T N L G T L K T Y L K L L F V V L M I - Q T W E P . . . . . . 93208 GTAAAGGTACCAGTTTCTTAATTGACTATTGTAGGGTTCTTGCTTGAGTATTGTAGATGA V K V P V S - L T I V G F L L E Y C R - - R Y Q F L N - L L - G S C L S I V D E C K G T S F L I D Y C R V L A - V L - M . . . . . . 93148 AACAAATTAAGGGACCTAGTAGAGGTACCAGGCTCTCATGATGAGGAGTCAGTTGATTGC N K L R D L V E V P G S H D E E S V D C T N - G T - - R Y Q A L M M R S Q L I A K Q I K G P S R G T R L S - - G V S - L . . . . . . 93088 CAGCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACT Q L E T V Q K V G A H F P M A S E S V T S W R R Y R K - V H T S R W R Q K V - L P A G D G T E S R C T L P D G V R K C D . . . . . . 93028 TTTCCAGCCAATGACAAAGAGGTTTAGGAAAGTGACTTGCCCATATAAAAGACACTTTCC F P A N D K E V - E S D L P I - K T L S F Q P M T K R F R K V T C P Y K R H F P F S S Q - Q R G L G K - L A H I K D T F . . . . . . 92968 TAAACATTTTGTGCAACTTTTGCAAATTGATAAAAACTTTTCAAGAACTCTTGCAAAGGC - T F C A T F A N - - K L F K N S C K G K H F V Q L L Q I D K N F S R T L A K A L N I L C N F C K L I K T F Q E L L Q R . . . . . . 92908 TACTACAAAGCAAAGACAGAATTATTCCAAGAACAACAGCAATATCTGGAGTTTTTCGTC Y Y K A K T E L F Q E Q Q Q Y L E F F V T T K Q R Q N Y S K N N S N I W S F S S L L Q S K D R I I P R T T A I S G V F R . . . . . . 92848 TAGTTGTTTAGGAATGCATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAA - L F R N A F S C S - T V N H S - I Y K S C L G M H S L V L K L - T I P E S I K L V V - E C I L L F L N C K P F L N L - . . . . . . 92788 GGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGA G I G V L C - K S R L S R W D S L V G R E L V C C V K S L G C P G G I A - W V D R N W C V V L K V - V V Q V G - L S G - . . . . . . 92728 TTGTTTTCTATTTAGGCTTGTTAAGCAATAGTGGACTATTTCTTAACTGTAAGATTGATA L F S I - A C - A I V D Y F L T V R L I C F L F R L V K Q - W T I S - L - D - - I V F Y L G L L S N S G L F L N C K I D . . . . . . 92668 ACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAATATTAGTGAAAAC T L S Y V W C N R V L L L L L N I S E N L F L T F G V I V F Y F C F - I L V K T N S F L R L V - S C F T F A F E Y - - K . . . . . . 92608 GATTGAAAATCCTGTAAGACAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACG D - K S C K T G R G F T P L S K E V S T I E N P V R Q V V V L L P - A R R F P R R L K I L - D R S W F Y S L K Q G G F H . . . . . . 92548 TAAAATCATCATGTTGATTTTACTGCATTTAACTTTCTTTTTATTCATTAGTGTAGTAAG - N H H V D F T A F N F L F I H - C S K K I I M L I L L H L T F F L F I S V V R V K S S C - F Y C I - L S F Y S L V - - . . . . . 92488 GGACCTGGTCTATTACTTGTTAAGTGAAGGCATATATTCTATCA G P G L L L V K - R H I F Y D L V Y Y L L S E G I Y S I G T W S I T C - V K A Y I L S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1-_PGL-16_AGS-1_PPS_1 (93030 92809) (frame '2'; 219 bp, 73 residues) 1 LFQPMTKRFR KVTCPYKRHF PKHFVQLLQI DKNFSRTLAK ATTKQRQNYS KNNSNIWSFS 61 SSCLGMHSLV LKL- 3-phase translation of AGS-1 (+strand): . . . . . . 92445 TGATAGAATATATGCCTTCACTTAACAAGTAATAGACCAGGTCCCTTACTACACTAATGA - - N I C L H L T S N R P G P L L H - - D R I Y A F T - Q V I D Q V P Y Y T N E I E Y M P S L N K - - T R S L T T L M . . . . . . 92505 ATAAAAAGAAAGTTAAATGCAGTAAAATCAACATGATGATTTTACGTGGAAACCTCCTTG I K R K L N A V K S T - - F Y V E T S L - K E S - M Q - N Q H D D F T W K P P C N K K K V K C S K I N M M I L R G N L L . . . . . . 92565 CTTAAGGGAGTAAAACCACGACCTGTCTTACAGGATTTTCAATCGTTTTCACTAATATTC L K G V K P R P V L Q D F Q S F S L I F L R E - N H D L S Y R I F N R F H - Y S A - G S K T T T C L T G F S I V F T N I . . . . . . 92625 AAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACAGTT K S K S K T R L H Q T - E R V I N L T V K A K V K H D Y T K R K K E L S I L Q L Q K Q K - N T I T P N V R K S Y Q S Y S . . . . . . 92685 AAGAAATAGTCCACTATTGCTTAACAAGCCTAAATAGAAAACAATCTACCCACTAAGCTA K K - S T I A - Q A - I E N N L P T K L R N S P L L L N K P K - K T I Y P L S Y - E I V H Y C L T S L N R K Q S T H - A . . . . . . 92745 TCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTATAGATTCAGGAA S H L D N L D F - H N T P I P L - I Q E P T W T T - T F N T T H Q F L Y R F R N I P P G Q P R L L T Q H T N S F I D S G . . . . . . 92805 TGGTTTACAGTTTAAGAACAAGAGAATGCATTCCTAAACAACTAGACGAAAAACTCCAGA W F T V - E Q E N A F L N N - T K N S R G L Q F K N K R M H S - T T R R K T P D M V Y S L R T R E C I P K Q L D E K L Q . . . . . . 92865 TATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTC Y C C C S W N N S V F A L - - P L Q E F I A V V L G I I L S L L C S S L C K S S I L L L F L E - F C L C F V V A F A R V . . . . . . 92925 TTGAAAAGTTTTTATCAATTTGCAAAAGTTGCACAAAATGTTTAGGAAAGTGTCTTTTAT L K S F Y Q F A K V A Q N V - E S V F Y - K V F I N L Q K L H K M F R K V S F I L E K F L S I C K S C T K C L G K C L L . . . . . . 92985 ATGGGCAAGTCACTTTCCTAAACCTCTTTGTCATTGGCTGGAAAAGTCACACTTTCTGAC M G K S L S - T S L S L A G K V T L S D W A S H F P K P L C H W L E K S H F L T Y G Q V T F L N L F V I G W K S H T F - . . . . . . 93045 GCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAATCAACTGACTCC A I G K C A P T F C T V S S W Q S T D S P S G S V H L L S V P S P A G N Q L T P R H R E V C T Y F L Y R L Q L A I N - L . . . . . . 93105 TCATCATGAGAGCCTGGTACCTCTACTAGGTCCCTTAATTTGTTTCATCTACAATACTCA S S - E P G T S T R S L N L F H L Q Y S H H E S L V P L L G P L I C F I Y N T Q L I M R A W Y L Y - V P - F V S S T I L . . . . . . 93165 AGCAAGAACCCTACAATAGTCAATTAAGAAACTGGTACCTTTACAAGGTTCCCAAGTTTG S K N P T I V N - E T G T F T R F P S L A R T L Q - S I K K L V P L Q G S Q V C K Q E P Y N S Q L R N W Y L Y K V P K F . . . . . 93225 TCAAATCATCAAAACTACAAATAACAGTTTCAAATAAGTTTTCA S N H Q N Y K - Q F Q I S F Q I I K T T N N S F K - V F V K S S K L Q I T V S N K F S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0119I05.1+_PGL-16_AGS-1_PPS_1 (92929 93183) (frame '2'; 252 bp, 84 residues) 1 KVFINLQKLH KMFRKVSFIW ASHFPKPLCH WLEKSHFLTP SGSVHLLSVP SPAGNQLTPH 61 HESLVPLLGP LICFIYNTQA RTLQ- ... finished at: Thu Aug 24 08:27:37 2006