SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 419 26.7 6.7 3.4 C08SLe0025E04.1 1543 1720 (145600) C Gypsy00139 Gypsy (9907) 184 1 1 * 2396 19.9 2.3 3.2 C08SLe0025E04.1 1573 2170 (145150) + GYPSOL2_LTR Unknown 792 1384 (196) 2 316 25.9 2.0 6.7 C08SLe0025E04.1 2210 2358 (144962) C Gypsy00129 Gypsy (218) 7832 7691 3 276 19.3 0.0 2.5 C08SLe0025E04.1 3190 3257 (144063) C Gypsy00169 Gypsy (2833) 9843 2512 4 229 30.0 0.0 0.0 C08SLe0025E04.1 4327 4386 (142934) C Gypsy00106 Gypsy (5114) 853 794 5 291 26.3 7.5 1.9 C08SLe0025E04.1 4518 4730 (142590) + Gypsy00178 Gypsy 7603 7827 (1264) 6 460 25.6 8.7 5.7 C08SLe0025E04.1 5113 5447 (141873) + Unknown00045 Unknown 3924 4268 (256) 7 1929 26.3 5.5 6.5 C08SLe0025E04.1 5708 6067 (141253) + Gypsy00033 Gypsy 5872 6491 (4504) 8 598 22.6 7.2 4.2 C08SLe0025E04.1 5806 6068 (141252) C Unknown00052 Unknown (4325) 344 74 9 1605 21.3 2.4 6.2 C08SLe0025E04.1 6857 7369 (139951) + Unknown00045 Unknown 494 1082 (3442) 10 * 1929 26.3 5.5 6.5 C08SLe0025E04.1 6858 7369 (139951) + Gypsy00033 Gypsy 6492 7373 (3622) 8 5035 25.3 4.1 4.3 C08SLe0025E04.1 7716 9900 (137420) + Unknown00045 Unknown 1452 3784 (1197) 10 2129 29.4 7.9 8.6 C08SLe0025E04.1 8036 11487 (135833) C Unknown00052 Unknown (1142) 3527 102 11 * 299 12.2 2.0 0.0 C08SLe0025E04.1 12012 12060 (135260) + Gypsy00033 Gypsy 7227 7276 (3719) 12 1780 22.4 3.1 6.2 C08SLe0025E04.1 12354 13148 (134172) + Unknown00045 Unknown 1472 2400 (2480) 13 2219 19.6 5.6 1.5 C08SLe0025E04.1 13739 14276 (133044) + GYPSOL2_LTR Unknown 759 1318 (262) 14 754 18.8 10.7 3.0 C08SLe0025E04.1 14120 14316 (133004) + Gypsy00118 Gypsy 5 216 (6191) 15 * 1580 25.3 5.4 4.2 C08SLe0025E04.1 14539 15111 (132209) + Gypsy00155 Gypsy 4275 4854 (1795) 16 * 1952 24.2 3.7 7.8 C08SLe0025E04.1 14966 15731 (131589) C Gypsy00131 Gypsy (7499) 734 1 17 * 8255 19.3 3.8 3.2 C08SLe0025E04.1 15116 17153 (130167) + Gypsy00080 Gypsy 1289 3338 (6608) 18 * 11804 14.7 1.0 1.0 C08SLe0025E04.1 15507 17627 (129693) C Unknown00025 Unknown (1046) 5262 3141 19 232 18.6 0.0 1.7 C08SLe0025E04.1 21215 21274 (126046) C HELITRON7_OS Unknown (8454) 1699 1641 20 7777 18.1 4.5 2.5 C08SLe0025E04.1 21453 24331 (122989) C Gypsy00180 Gypsy (3065) 10350 7162 21 1226 23.1 2.5 1.5 C08SLe0025E04.1 24335 24738 (122582) + Gypsy00152 Gypsy 1119 1526 (4252) 22 463 32.3 5.6 2.2 C08SLe0025E04.1 24854 25122 (122198) + Gypsy00003 Gypsy 3396 3673 (4720) 23 3363 24.3 4.5 2.6 C08SLe0025E04.1 25452 26701 (120619) + Gypsy00152 Gypsy 3849 5122 (656) 24 * 11158 20.1 3.5 3.7 C08SLe0025E04.1 25694 30296 (117024) C Gypsy00180 Gypsy (2305) 11110 6203 25 243 28.3 8.2 5.2 C08SLe0025E04.1 30599 30792 (116528) + Unknown00052 Unknown 4150 4349 (320) 26 * 410 20.9 5.3 3.5 C08SLe0025E04.1 30731 30844 (116476) + Gypsy00026 Gypsy 6285 6400 (343) 27 361 23.3 9.1 6.0 C08SLe0025E04.1 30756 30922 (116398) C Gypsy00033 Gypsy (939) 10056 264 28 * 250 22.1 5.9 9.2 C08SLe0025E04.1 31756 31953 (115367) + Unknown00002 Unknown 36 7365 (2616) 29 3883 34.7 4.7 2.7 C08SLe0025E04.1 32117 35120 (112200) C Gypsy00066 Gypsy (5532) 6776 3713 30 239 24.0 0.0 0.0 C08SLe0025E04.1 35372 35421 (111899) + Gypsy00101 Gypsy 9730 9779 (1903) 31 226 21.3 6.0 7.7 C08SLe0025E04.1 37056 37172 (110148) + Gypsy00074 Gypsy 12609 12723 (1368) 32 5974 25.8 2.5 4.1 C08SLe0025E04.1 38595 41418 (105902) C Gypsy00172 Gypsy (3588) 2325 455 33 2704 25.3 5.7 5.2 C08SLe0025E04.1 40545 42075 (105245) C Copia00153 Copia (1491) 5898 4361 34 * 971 25.7 0.0 0.0 C08SLe0025E04.1 42076 42328 (104992) + Gypsy00187 Gypsy 3758 4010 (1854) 35 259 20.9 0.0 9.0 C08SLe0025E04.1 42699 42798 (104522) + Unknown00002 Unknown 4807 4897 (5084) 36 570 23.5 6.4 4.1 C08SLe0025E04.1 42950 43215 (104105) + Gypsy00177 Gypsy 4367 4638 (5667) 37 231 15.2 2.2 0.0 C08SLe0025E04.1 44513 44558 (102762) C Gypsy00033 Gypsy (2421) 8574 8528 38 722 22.4 1.5 0.5 C08SLe0025E04.1 44679 44875 (102445) C Gypsy00060 Gypsy (4976) 765 567 39 379 27.5 6.9 4.3 C08SLe0025E04.1 45760 46100 (101220) C Gypsy00033 Gypsy (709) 7271 6848 40 * 434 25.0 9.4 3.6 C08SLe0025E04.1 45916 46139 (101181) + Gypsy00177 Gypsy 4402 4638 (5667) 41 349 15.8 7.1 4.3 C08SLe0025E04.1 47633 47766 (99554) C Gypsy00181 Gypsy (727) 6471 5931 42 6411 2.8 0.1 0.1 C08SLe0025E04.1 48054 48838 (98482) + GYLES1_LTR Unknown 1 785 (0) 43 * 15156 19.4 0.4 1.6 C08SLe0025E04.1 48465 51720 (95600) + Gypsy00157 Gypsy 5 3220 (1743) 44 * 38886 2.2 0.0 0.0 C08SLe0025E04.1 48839 53469 (93851) + GYLES1_I Unknown 1 4631 (0) 45 6420 2.8 0.1 0.0 C08SLe0025E04.1 53470 54253 (93067) + GYLES1_LTR Unknown 1 785 (0) 46 257 20.2 3.7 3.7 C08SLe0025E04.1 56161 56242 (91078) + Gypsy00003 Gypsy 6131 6212 (2181) 47 * 304 27.2 6.8 4.3 C08SLe0025E04.1 56182 56461 (90859) C Gypsy00142 Gypsy (7113) 952 666 48 1516 25.8 2.2 1.2 C08SLe0025E04.1 57893 58387 (88933) C Gypsy00052 Gypsy (4793) 1014 515 49 592 20.7 0.7 0.7 C08SLe0025E04.1 59432 59577 (87743) + Gypsy00090 Gypsy 5426 5571 (1) 50 497 14.7 1.1 3.1 C08SLe0025E04.1 59652 59802 (87518) + Copia00149 Copia 2443 8277 (6206) 51 238 21.0 6.6 12.3 C08SLe0025E04.1 63094 63305 (84015) + Unknown00019 Unknown 3284 3483 (11150) 52 * 11689 23.6 1.6 2.0 C08SLe0025E04.1 63174 66197 (81123) + Gypsy00049 Gypsy 275 3285 (11245) 53 1524 29.4 5.4 2.2 C08SLe0025E04.1 65606 66287 (81033) + Unknown00019 Unknown 5791 6494 (8139) 54 * 18591 22.3 2.4 1.9 C08SLe0025E04.1 66308 75866 (71454) + Gypsy00049 Gypsy 3448 13171 (1359) 53 13462 18.4 8.6 3.7 C08SLe0025E04.1 74605 77800 (69520) + Copia00149 Copia 5253 8607 (5876) 55 * 868 16.6 3.5 4.0 C08SLe0025E04.1 81065 81265 (66055) + Gypsy00049 Gypsy 218 417 (14113) 56 1638 21.3 6.2 7.0 C08SLe0025E04.1 81317 82027 (65293) C Copia00153 Copia (1904) 5485 4781 57 * 1804 20.4 3.5 4.2 C08SLe0025E04.1 82015 82597 (64723) + Unknown00052 Unknown 3068 4756 (735) 58 3026 20.7 2.0 2.9 C08SLe0025E04.1 82690 83616 (63704) + Unknown00052 Unknown 3658 5490 (1) 59 4324 28.4 4.1 4.2 C08SLe0025E04.1 83651 86053 (61267) + Unknown00056 Unknown 708 3107 (2002) 60 729 24.4 5.4 7.8 C08SLe0025E04.1 86040 86502 (60818) + Gypsy00063 Gypsy 9334 9785 (1141) 61 * 620 23.4 3.4 2.9 C08SLe0025E04.1 87361 87567 (59753) + Gypsy00181 Gypsy 6503 6710 (0) 62 * 3955 20.6 4.7 1.8 C08SLe0025E04.1 87395 88381 (58939) C Copia00153 Copia (1497) 5892 4878 63 2112 10.2 0.0 0.3 C08SLe0025E04.1 88382 88704 (58616) + Gypsy00107 Gypsy 8846 9167 (1732) 64 * 3812 11.2 0.6 2.8 C08SLe0025E04.1 88704 89344 (57976) + Gypsy00107 Gypsy 9281 9907 (992) 64 1555 15.3 12.2 6.2 C08SLe0025E04.1 89348 89764 (57556) + Gypsy00181 Gypsy 435 876 (5834) 65 6941 20.5 2.5 3.2 C08SLe0025E04.1 89765 91606 (55714) + Gypsy00115 Gypsy 6151 7980 (3) 66 * 9502 19.8 2.0 3.0 C08SLe0025E04.1 90139 92432 (54888) C Unknown00025 Unknown (1054) 5254 2984 67 1518 24.0 3.6 4.4 C08SLe0025E04.1 92459 92554 (54766) C Unknown00025 Unknown (3525) 2783 2312 67 1571 22.5 0.5 1.8 C08SLe0025E04.1 92555 92934 (54386) C Gypsy00143 Gypsy (668) 6788 6414 68 2613 21.3 1.7 1.2 C08SLe0025E04.1 92936 93509 (53811) C Gypsy00127 Gypsy (32) 6515 5939 69 * 7046 24.4 4.4 4.7 C08SLe0025E04.1 93509 93533 (53787) + Gypsy00177 Gypsy 6376 6435 (3870) 70 7259 19.4 1.5 1.3 C08SLe0025E04.1 93534 95185 (52135) + Unknown00025 Unknown 3604 5258 (1050) 71 7046 24.4 4.4 4.7 C08SLe0025E04.1 95186 96262 (51058) + Gypsy00177 Gypsy 6436 9114 (1191) 70 * 15307 21.7 3.6 2.8 C08SLe0025E04.1 95499 100044 (47276) C Gypsy00115 Gypsy (2249) 5764 807 72 7281 9.9 0.6 0.9 C08SLe0025E04.1 100054 101149 (46171) + Gypsy00074 Gypsy 12631 13723 (368) 73 * 14149 9.0 0.3 0.1 C08SLe0025E04.1 101123 103061 (44259) C Gypsy00183 Gypsy (4684) 2138 196 74 309 31.8 1.3 1.3 C08SLe0025E04.1 103059 103214 (44106) + Gypsy00125 Gypsy 4289 4444 (5636) 75 * 10153 19.6 1.2 1.7 C08SLe0025E04.1 103222 105368 (41952) C Copia00153 Copia (892) 6497 4362 76 460 27.1 5.7 1.9 C08SLe0025E04.1 106271 106428 (40892) + Gypsy00107 Gypsy 8788 8951 (1948) 77 * 518 23.6 5.2 0.6 C08SLe0025E04.1 106315 106567 (40753) C Gypsy00107 Gypsy (980) 9919 9624 78 810 23.3 3.0 4.3 C08SLe0025E04.1 107364 107664 (39656) + POTTEN1 Unknown 813 1109 (0) 79 2890 10.3 0.0 0.2 C08SLe0025E04.1 110127 110524 (36796) + SSU-rRNA_Ath Unknown 709 1105 (797) 80 * 3075 18.6 0.7 4.5 C08SLe0025E04.1 110523 111214 (36106) + Gypsy00063 Gypsy 2375 5380 (484) 81 * 30154 17.8 0.8 1.5 C08SLe0025E04.1 111208 116897 (30423) + Gypsy00181 Gypsy 529 6180 (530) 82 24062 18.9 0.9 1.2 C08SLe0025E04.1 113116 117919 (29401) C Gypsy00179 Gypsy (1000) 4806 19 83 * 23834 18.5 1.5 1.3 C08SLe0025E04.1 117868 122520 (24800) + Gypsy00181 Gypsy 1 4661 (2049) 84 * 13293 18.8 1.6 2.4 C08SLe0025E04.1 122511 125235 (22085) + Gypsy00063 Gypsy 901 3603 (7323) 85 * 10288 19.2 1.8 1.3 C08SLe0025E04.1 123538 125662 (21658) C Copia00153 Copia (892) 6497 4362 86 * 4703 24.6 6.2 7.2 C08SLe0025E04.1 128619 131045 (16275) C Unknown00016 Unknown (2579) 2402 1 87 787 25.3 9.7 7.4 C08SLe0025E04.1 130335 131261 (16059) + Unknown00002 Unknown 991 1938 (8043) 88 * 308 22.4 5.0 10.9 C08SLe0025E04.1 131146 131365 (15955) + Gypsy00121 Gypsy 375 581 (7745) 89 * 265 30.2 0.8 1.7 C08SLe0025E04.1 131722 131839 (15481) + Gypsy00177 Gypsy 595 711 (9594) 90 261 30.9 0.0 1.2 C08SLe0025E04.1 131827 131908 (15412) C Gypsy00143 Gypsy (856) 6600 6520 91 * 7339 24.9 3.5 3.5 C08SLe0025E04.1 132250 135529 (11791) C Unknown00056 Unknown (0) 5491 5 92 1610 23.1 5.8 6.3 C08SLe0025E04.1 135413 136155 (11165) + Unknown00016 Unknown 1646 2384 (2597) 93 * 2124 19.8 5.0 2.1 C08SLe0025E04.1 135630 136186 (11134) C Unknown00052 Unknown (1039) 3630 3058 94 662 22.9 6.4 8.4 C08SLe0025E04.1 136163 136648 (10672) + Gypsy00121 Gypsy 6846 7321 (1005) 95 * 412 23.0 11.6 1.2 C08SLe0025E04.1 136935 137109 (10211) C Gypsy00149 Gypsy (4756) 410 99 96 528 27.0 4.4 1.8 C08SLe0025E04.1 138209 138523 (8797) + Gypsy00142 Gypsy 826 7485 (13) 97 458 31.9 6.6 2.7 C08SLe0025E04.1 138248 138631 (8689) C Gypsy00177 Gypsy (5703) 4602 855 98 * 360 23.4 6.1 0.6 C08SLe0025E04.1 139053 139215 (8105) C Gypsy00121 Gypsy (1326) 7000 6829 99 251 21.8 13.2 8.8 C08SLe0025E04.1 139142 139277 (8043) + Gypsy00142 Gypsy 1927 2068 (5997) 100 * 441 27.3 7.3 5.6 C08SLe0025E04.1 139421 139761 (7559) + Unknown00016 Unknown 4283 4629 (352) 101 * 514 22.3 4.6 6.3 C08SLe0025E04.1 139533 139777 (7543) + Gypsy00038 Gypsy 5073 5494 (2431) 102 661 21.1 4.9 7.0 C08SLe0025E04.1 140010 140295 (7025) + Gypsy00042 Gypsy 6084 6363 (1135) 103 593 18.0 7.5 7.5 C08SLe0025E04.1 140115 140342 (6978) C Unknown00052 Unknown (4332) 337 110 104 * 745 28.3 4.1 8.3 C08SLe0025E04.1 140364 141316 (6004) + Unknown00016 Unknown 116 1028 (3953) 105 * 1717 23.8 3.1 4.5 C08SLe0025E04.1 141161 141777 (5543) C Unknown00002 Unknown (9367) 614 7 106 * 2385 23.8 3.8 2.7 C08SLe0025E04.1 141332 142617 (4703) + Unknown00016 Unknown 1021 2349 (2632) 105