<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:25:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205556" ref_strand="+" ref_description="SGN-E205556 [cLEC-21-I11]">
      <seq>cataaaccccttagtactcctcctaaatctccatattagttcaatatttttttctaaaaattatgggatttgggaggtcttttgttaagggaattcactttggtgaaaaaaataaatcaagaaaaaccaaaattgttgaaagtagtaatatcactactactactacttatgtgtgtagagatgagttagataaaaaaaagcctaaaatcaagaaacgggtgagatttgatttagaaccagaagaagaggaaaacgaaaagaatagcacttttgagaaaaatacaattattcaagaggagaaaacaaaagtacaagaaggtgctaatatttcgaatgatgatggggttataaaagtgaaaatcttaatgaaaaaagaagatgctgcgagacttctgataaaatatcgaaacggaggggaacttgagtttatggatattgctcaacaacttgtacaagttccttctagtagtgttaaagttctatagttaatagttaagtatgacaatagagcatctacaatttattttgtacctaactttatgtaataattttagaataaataataaataacttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="7076" stop="5893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6776" g_stop="6189" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E205556" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6776" e_stop="6189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTATATTAT</genome_strand>
        <mrna_strand>CATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293420" ref_strand="+" ref_description="SGN-E293420 [cLET-15-D3]">
      <seq>aaaaatatagccataaaccccttagtactcctcctaaatctccatattagttcaatatttttttctaaaaattatgggatttgggaggtcttttgttaagggaattcactttggtgaaaaaaataaatcaagaaaaaccaaaattgttgaaagtagtaatatcactactactactacttatgtgtgtagagatgagttagataaaaaaaagcctaaaatcaagaaacgggtgagatttgatttagaaccagaagaagaggaaaacgaaaagaatagcacttttgagaaaaatacaattattcaagaggagaaaacaaaagtacaagaaggtgctaatatttcgaatgatgatggggttataaaagtgaaaatcttaatgaaaaaagaagatgctgcgagacttctgataaaatatcgaaacggaggggaacttgagtttatggatattgctcaacaacttgtacaagttccttctagtagtgttaaagttctatagttaatagttaagtatgacaatagagcatctacaatttattttgtacctaactttatgtaataattttagaataaataataaataacttattatattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="7087" stop="5893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6787" g_stop="6191" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E293420" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6787" e_stop="6191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTATATT</genome_strand>
        <mrna_strand>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293421" ref_strand="+" ref_description="SGN-E293421 [cLET-15-D3](-)">
      <seq>tttttaatataataagttatttattatttattctaaaattattacataaagttaggtacaaaataaattgtagatgctctattgtcatacttaactattaactatagaactttaacactactagaaggaacttgtacaagttgttgagcaatatccataaactcaagttcccctccgtttcgatattttatcagaagtctcgcagcatcttcttttttcattaagattttcacttttataaccccatcatcattcgaaatattagcaccttcttgtacttttgttttctcctcttgaataattgtatttttctcaaaagtgctattcttttcgttttcctcttcttctggttctaaatcaaatctcacccgtttcttgattttaggcttttttttatctaactcatctctacacacataagtagtagtagtagtgatattactactttcaacaattttggtttttcttgatttatttttttcaccaaagtgaattcccttaacaaaagacctcccaaatcccataatttttagaaaaaaatattgaactaatatggagatttaggaggagtactaaggggtttatggctatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="5893" stop="7087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6191" g_stop="6787" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E293421" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6191" e_stop="6787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAATATAATAAGTTATTTATTATTTATTCTAAAATTATTACATAAAGTTAGGTACAAAATAAATTGTAGATGCTCTATTGTCATACTTAACTATTAACTATAGAACTTTAACACTACTAGAAGGAACTTGTACAAGTTGTTGAGCAATATCCATAAACTCAAGTTCCCCTCCGTTTCGATATTTTATCAGAAGTCTCGCAGCATCTTCTTTTTTCATTAAGATTTTCACTTTTATAACCCCATCATCATTCGAAATATTAGCACCTTCTTGTACTTTTGTTTTCTCCTCTTGAATAATTGTATTTTTCTCAAAAGTGCTATTCTTTTCGTTTTCCTCTTCTTCTGGTTCTAAATCAAATCTCACCCGTTTCTTGATTTTAGGCTTTTTTTTATCTAACTCATCTCTACACACATAAGTAGTAGTAGTAGTGATATTACTACTTTCAACAATTTTGGTTTTTCTTGATTTATTTTTTTCACCAAAGTGAATTCCCTTAACAAAAGACCTCCCAAATCCCATAATTTTTAGAAAAAAATATTGAACTAATATGGAGATTTAGGAGGAGTACTAAGGGGTTTATGGCTATATTTTT</genome_strand>
        <mrna_strand>TTTTTAATATAATAAGTTATTTATTATTTATTCTAAAATTATTACATAAAGTTAGGTACAAAATAAATTGTAGATGCTCTATTGTCATACTTAACTATTAACTATAGAACTTTAACACTACTAGAAGGAACTTGTACAAGTTGTTGAGCAATATCCATAAACTCAAGTTCCCCTCCGTTTCGATATTTTATCAGAAGTCTCGCAGCATCTTCTTTTTTCATTAAGATTTTCACTTTTATAACCCCATCATCATTCGAAATATTAGCACCTTCTTGTACTTTTGTTTTCTCCTCTTGAATAATTGTATTTTTCTCAAAAGTGCTATTCTTTTCGTTTTCCTCTTCTTCTGGTTCTAAATCAAATCTCACCCGTTTCTTGATTTTAGGCTTTTTTTTATCTAACTCATCTCTACACACATAAGTAGTAGTAGTAGTGATATTACTACTTTCAACAATTTTGGTTTTTCTTGATTTATTTTTTTCACCAAAGTGAATTCCCTTAACAAAAGACCTCCCAAATCCCATAATTTTTAGAAAAAAATATTGAACTAATATGGAGATTTAGGAGGAGTACTAAGGGGTTTATGGCTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732390" ref_strand="+" ref_description="SGN-E732390 [LB02AB08]">
      <seq>caatttttagaccttttttttttttccaaattttggaaacaaaacaagggctggagcaggagcacttatcgggaaaaaaatcccacgcatcaaatttcctcaacaacacgcaaaagcttcttcgggttccatgcagcaaaactcacaacacatgaaaacttccgcaactgatgatgttcctcaaacattcttctcaaaatccccatctaccacgtctgttgcagggaaggcttctgaccaacctaaaaaaaccccggggtctcaggaggaaattgagcccattttgttagggggctgcaactaattttgaggcaaaaatgtgcaaacaaaggacatagtttttcaacgtcgggcttacatttgggggatttcttttgcatgtatggaataactgacacagttttcgggaattataagggtattctgcaaatgacatctttaattaatgatcattaaacattggaggctaatgcggggatgggcttactaccttgatactgaatgaaaacttttgcaaactatgcattataaaattttggcccatctgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="13469" stop="18035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13769" g_stop="13893" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13894" i_stop="15886" i_length="1993">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15887" g_stop="16047" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="286" r_length="161" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="17466" i_length="1419">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17467" g_stop="17743" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="563" r_length="277" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E732390" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13769" e_stop="13893"/>
          <exon e_start="15887" e_stop="16047"/>
          <exon e_start="17467" e_stop="17743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTAGACCTTTTTTTTTTTTCCAGATTTTGGAGACGAAACAATGGCTGGAGCAGGAGCACATATCGTGAAGAGAATCCCACGCATCAAATTTCCTCAACGACACGCAAAAGCTTCTTCTGGTATTCCCTTTTTGTTTTTTTCTCATTCTTGGTGTTCCTAATTTTCTTTTTATCTATATGTATTTATTGACTTGTTTGATCTTCTTGAAATATGTCTTTTTTTTTTTGTTTATAATTGTGAGATATAGTGGTAGAAAGCACTAATTTGTTGTAAAGATGAAGTCTTGGAAAGAAATAGGTCCAAATTGAGCTAAATGGATATAAAGAACCATTTATTAGCTGATGCTAGTTTGATAGATTCTGCCTTACTGTTAGAAAACCACTGGCTTATTGTTAAGGAGAAAGAATGGGGGTGAAGCGGGTCTAAATGGAGCGGGATTTATTAAGAGGATTCATATAGCCGACTTCAACTAGTTTGGGTTCCGAGTGGTGGAGTCGGAAATTTGGGCGAGGGATTCAAGAAAAATATAAGGACATACTTGAAATTTGTACCTATAGTTTCGAGTAATTTTTTAATCGTTTAACTCCTAAATAGTACTTTCTCTTATGTGAAGGGGATTCAATTGAATACACAACTGATTATAAGTACTTGGAAATAATCATATCATAGATAAATTTTTTTCATGCCTAGACTCTCCGTCAGTTCTTTTGCAAATCGTGATAGGTTTTGACAGCAATGACAACATGCCTAGTGTGAACAGAAAAGTGGGGTGTACGCAAACCTGACCCCTACCTTGTGTGAGATAGAGAGGTTGTTTCCAATACTCCTGTATCAAGGAAAACATTTTCAAAAACAAATAAAATTATGGTAGTCTTTTTTTTCATAGAGATTATAGGGAACGGAAATACCATTTTCTTCTCTTCCACTTTGGCCAATATGAGTTGACCTGGTACTAGCGCTTTATCTGGGAATTTCTCATCCTAGTAGGAGCTTCCCAGAGAAAAAGCTTAGTAGCCACGTTAGCAGGGCTTCCACTTCCAAATAGGTGACTCTGCCCTATTTGAGGGATAGTACTAATAGTTTTATGTTGTTTTTTGATAATACTGTAGTGTTATGTGCACATTGATTTGTCTTTATGTGAATAAGCTATTGACAAGGTGGTTCGATGCGCGGAGAGGGGCATGGTCCGTCCAAATCTTCCCATTTATGCCTTTACTATATTTGTTCATTATGGTCAATGCCTGCATTTAGAAAAACTTTAAAACTGTCTGATTCTAAATGGCAGAAGTTTTGAGTTATAGTGTTTTACACTTAATCAATTCATTTAGAAGCTGAACTATTCTGCGGAGATATCTTAATCTCTTTTCAGTTAGTTGATAGGTACTATAAAGATTATTAACTCTCAGTTCCAAACTTCCCCAACCTTCTCAAAATGTAGGATGTTCTGACCGAGGAAGAAAAGGAACAAAGATGTTTATAATGAGGGTAAAATCCCCGTTTTTACATTTTGCAATAAATGGTTAAATTCATTATATCAATATGAGTATTCTATATCGATAAAATACTTATTTTGGAACCACCTCTATATTATAACACTCAAAGATCAACAAACATGACTTGCTCAAGTGAAATTTTTTTAATACAAAATGCATGTTCCAGCCCATTCACCTTAATCAGGCACTGGTTTCCTTTTGCATCAAGATCAAAGTGCATATGCAAAAGTTTCTAGTTTAGAAGTCTATGGTGCAACTAGATGCATAAACAGTAGCTTTTAATCTCTAATCTTCTTTATGCAGCAAGTTGATATCTTACTATTCCAATTCCTTGGATTTCTCCCTATCGTATTCCAATTCTTCTGAGTGTGTGATGCCTAGGGTCGTTACTATGTTCTCGGACATCTTCTTTTTGAAATGTTTTTCGGTCAGTAAACAGAAAAAGGAGGAAGGAGGGAGGAGGGAGTTAGAGCGGGTCCTGATAAAGGATCTTGTTTGTTTAACATGGACTCCTGTCTGGCATGCAATTCTATGATTTACTACTTGCACTTAGCTTTTAGTGTGATAGATTGTTTGCCGATTTACCATATTCTTTAGTCAGAAGTTTCTTGTTCTGCAGGTTCCATGCAGCAGAACTCACAACACATGAAAACTTCCGCAACTGATGATGTTCCTCAAACATTCTTCTCAAGATCCCCATCTAGCACGTCTGTTGCAGGGAAGGCTTCTGACCAACCTAAAAGAACACCGGTGTCTCAGGAGGAAATTGAGTCCATTTTGGTATGTATAAACTGCTCCCATTGTATTTTGTTCCATTTTATGTACACTATTTCCTTATTAGTCCATTCCAAAAAGTATGACACCTTTTTGAATTTGGGAAAATTTAACTTCAAATTTTTTGTTTTACCCTAAATACATACTTGTATTTCTTTAAAGTCTCAAGCATTTTTAACATCACAAGCTTCAAAAGTCTATCTTTCTTTCTTATATTCCGTGTCAAGTCAAACTACGCCATATAATCGAAATGGAGGGAGTATTAGCTAATCAGAACTTTGAGTAACAAAAAAAAAGAAAGAAAAAAGCCTATCATTTACTTTGGAAATGCGAAGTAACTATAGGATCCTTTGATAAGATAATCTAGTTATAAATTATTAAGGTTGTTGTTTTCTTCAGTTCTATGCCAAGTGAACTCAAATATTACAAGTTCTGTTTAATTAATTTTTGTTACCAATTGTGGGAAAATGGATAATCCCCAATGTTTTCCTCCTTTTATTATAGGGAATACCCTGTATATTTCTTTAGTATTGGTTATATCAAATATTCTTTATATTGTATAAGTATTAGTCTTGTATTTTCGTATTCTTAGATTTCTATTTCTATGGGTGATTCTTTAGCTTTGATTATAGTATTTTCTTCTTGTTATCCATGCTTTTTGTCGTCTTCTTTTTCATATGTTTTGAGCTAAGGGTCTATAGGAAACAACCTCTCTAAGGTAGGGCTAAGGTTTGTGTACGCACAACCCTCCTCAGACCCCACTTGTGGGATTACACTGGCTATGTTGTTGTTCACTTTTAAGTTGTTCAGGCTCTTCAAAAATGTCGACAGGTGCGTGGAGGATCCTCCAAAAATAGTGTATTTTTGAAGGATCCAACACGGGTGCTGCTTTTCGGAGAGTCCGAGCAACTTAGGTCACTCACTTTACTTTGCATTTCTTGTTTTTCTTGCTTCAGCTTTGTTTTACCGTTCAAATATTGTTTCCATGGGACTGGAAGCCTATCGTAAAGCATTTTTGAGACTTCTATTAGTGTATATATTAATAAGAGCTACTGAAATTAAAGGGTTTCATCTTATTAATGTTCTTTGTATGGGCAACAGTCGACACAATCTTCTCTCGTAGTCTAATTGAGATACTGTCAAAACAAAAGCAAATTCGTAATTGGAAAGAGCAGTGATAGAATGTACAGAGCCTCAACTAATATGTCCATGCCTTACTGTGTTAATTATATAATCTTCATTTCCATCACTTCACATTCTGCAATCTGCGCTTAAGATGTAAACACAAGCATATAGATACTAACCTGCGAAGACAGATTCATGATGCCATATTTGTTAAGTTCAAGCCAAACAATTTTGTTCTAGAGATAATTCTATGAAAATCTGCCAATAACTGCCCTTAAAACTGTTTCTCCACTTTTACAGTTAGGTGGCTGCAACTAATTTTGAGGCGAAGATGTGCAGACAGAGGACATAGTTTTTCGACGTCTGGCTTACATTTGGGTGATTTCTTTTGCATGTATGGTATAACTGACACAGTTTTCTGGAATTATAAGTGTATTCTGCAAATGACATCTTTAATTAATGATCATTAGACATTGGAGGCTAATGCGTGGATTGGCTTACTACCTTGATACTGAATGTAAACATTTGCAGACTATGCATTATAAAATTTTGGTCCATCTGTTTGAGAATCTGTCAA</genome_strand>
        <mrna_strand>CAATTTTTAGACCTTTTTTTTTTTTCCAAATTTTGGAAACAAAACAAGGGCTGGAGCAGGAGCACTTATCGGGAAAAAAATCCCACGCATCAAATTTCCTCAACAACACGCAAAAGCTTCTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATGCAGCAAAACTCACAACACATGAAAACTTCCGCAACTGATGATGTTCCTCAAACATTCTTCTCAAAATCCCCATCTACCACGTCTGTTGCAGGGAAGGCTTCTGACCAACCTAAAAAAACCCCGGGGTCTCAGGAGGAAATTGAGCCCATTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGGGGCTGCAACTAATTTTGAGGCAAAAATGTGCAAACAAAGGACATAGTTTTTCAACGTCGGGCTTACATTTGGGGGATTTCTTTTGCATGTATGGAATAACTGACACAGTTTTCGGGAATTATAAGGGTATTCTGCAAATGACATCTTTAATTAATGATCATTAAACATTGGAGGCTAATGCGGGGATGGGCTTACTACCTTGATACTGAATGAAAACTTTTGCAAACTATGCATTATAAAATTTTGGCCCATCTGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732012" ref_strand="+" ref_description="SGN-E732012 [LB01AB10]">
      <seq>caatttttagaccttttttttttttccaaattttggaaacaaaacaatggctggagcaggagcacttatcgtgaaaaaaatcccacgcatcaaatttcctcaacaacacccaaaagcttcttcgggttccatgcagcaaaactcacaacacatgaaaacttccgcaactgatgatgttcctcaaacattcttctcaaaatccccatctaccacgtctgttgcagggaaggcttctgaccaacctaaaaaaacaccggggtctcaggaggaaattgagcccattttgttagggggctgcaactaattttgaggcaaaaatgtgcaaacaaaggacatagtttttcaacgtcgggcttacatttgggggatttcttttgcatgtatggaataactgacacagttttctggaattataagggtattctgcaaatgacatctttaattaatgatcattaaacattggaggctaatgcggggattggcttactaccttgatactgaatgtaaacatttgcaaactatgcattataaaattttggcccatctgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="13469" stop="18035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13769" g_stop="13893" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13894" i_stop="15886" i_length="1993">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15887" g_stop="16047" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="286" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="17466" i_length="1419">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17467" g_stop="17743" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="563" r_length="277" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E732012" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13769" e_stop="13893"/>
          <exon e_start="15887" e_stop="16047"/>
          <exon e_start="17467" e_stop="17743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTAGACCTTTTTTTTTTTTCCAGATTTTGGAGACGAAACAATGGCTGGAGCAGGAGCACATATCGTGAAGAGAATCCCACGCATCAAATTTCCTCAACGACACGCAAAAGCTTCTTCTGGTATTCCCTTTTTGTTTTTTTCTCATTCTTGGTGTTCCTAATTTTCTTTTTATCTATATGTATTTATTGACTTGTTTGATCTTCTTGAAATATGTCTTTTTTTTTTTGTTTATAATTGTGAGATATAGTGGTAGAAAGCACTAATTTGTTGTAAAGATGAAGTCTTGGAAAGAAATAGGTCCAAATTGAGCTAAATGGATATAAAGAACCATTTATTAGCTGATGCTAGTTTGATAGATTCTGCCTTACTGTTAGAAAACCACTGGCTTATTGTTAAGGAGAAAGAATGGGGGTGAAGCGGGTCTAAATGGAGCGGGATTTATTAAGAGGATTCATATAGCCGACTTCAACTAGTTTGGGTTCCGAGTGGTGGAGTCGGAAATTTGGGCGAGGGATTCAAGAAAAATATAAGGACATACTTGAAATTTGTACCTATAGTTTCGAGTAATTTTTTAATCGTTTAACTCCTAAATAGTACTTTCTCTTATGTGAAGGGGATTCAATTGAATACACAACTGATTATAAGTACTTGGAAATAATCATATCATAGATAAATTTTTTTCATGCCTAGACTCTCCGTCAGTTCTTTTGCAAATCGTGATAGGTTTTGACAGCAATGACAACATGCCTAGTGTGAACAGAAAAGTGGGGTGTACGCAAACCTGACCCCTACCTTGTGTGAGATAGAGAGGTTGTTTCCAATACTCCTGTATCAAGGAAAACATTTTCAAAAACAAATAAAATTATGGTAGTCTTTTTTTTCATAGAGATTATAGGGAACGGAAATACCATTTTCTTCTCTTCCACTTTGGCCAATATGAGTTGACCTGGTACTAGCGCTTTATCTGGGAATTTCTCATCCTAGTAGGAGCTTCCCAGAGAAAAAGCTTAGTAGCCACGTTAGCAGGGCTTCCACTTCCAAATAGGTGACTCTGCCCTATTTGAGGGATAGTACTAATAGTTTTATGTTGTTTTTTGATAATACTGTAGTGTTATGTGCACATTGATTTGTCTTTATGTGAATAAGCTATTGACAAGGTGGTTCGATGCGCGGAGAGGGGCATGGTCCGTCCAAATCTTCCCATTTATGCCTTTACTATATTTGTTCATTATGGTCAATGCCTGCATTTAGAAAAACTTTAAAACTGTCTGATTCTAAATGGCAGAAGTTTTGAGTTATAGTGTTTTACACTTAATCAATTCATTTAGAAGCTGAACTATTCTGCGGAGATATCTTAATCTCTTTTCAGTTAGTTGATAGGTACTATAAAGATTATTAACTCTCAGTTCCAAACTTCCCCAACCTTCTCAAAATGTAGGATGTTCTGACCGAGGAAGAAAAGGAACAAAGATGTTTATAATGAGGGTAAAATCCCCGTTTTTACATTTTGCAATAAATGGTTAAATTCATTATATCAATATGAGTATTCTATATCGATAAAATACTTATTTTGGAACCACCTCTATATTATAACACTCAAAGATCAACAAACATGACTTGCTCAAGTGAAATTTTTTTAATACAAAATGCATGTTCCAGCCCATTCACCTTAATCAGGCACTGGTTTCCTTTTGCATCAAGATCAAAGTGCATATGCAAAAGTTTCTAGTTTAGAAGTCTATGGTGCAACTAGATGCATAAACAGTAGCTTTTAATCTCTAATCTTCTTTATGCAGCAAGTTGATATCTTACTATTCCAATTCCTTGGATTTCTCCCTATCGTATTCCAATTCTTCTGAGTGTGTGATGCCTAGGGTCGTTACTATGTTCTCGGACATCTTCTTTTTGAAATGTTTTTCGGTCAGTAAACAGAAAAAGGAGGAAGGAGGGAGGAGGGAGTTAGAGCGGGTCCTGATAAAGGATCTTGTTTGTTTAACATGGACTCCTGTCTGGCATGCAATTCTATGATTTACTACTTGCACTTAGCTTTTAGTGTGATAGATTGTTTGCCGATTTACCATATTCTTTAGTCAGAAGTTTCTTGTTCTGCAGGTTCCATGCAGCAGAACTCACAACACATGAAAACTTCCGCAACTGATGATGTTCCTCAAACATTCTTCTCAAGATCCCCATCTAGCACGTCTGTTGCAGGGAAGGCTTCTGACCAACCTAAAAGAACACCGGTGTCTCAGGAGGAAATTGAGTCCATTTTGGTATGTATAAACTGCTCCCATTGTATTTTGTTCCATTTTATGTACACTATTTCCTTATTAGTCCATTCCAAAAAGTATGACACCTTTTTGAATTTGGGAAAATTTAACTTCAAATTTTTTGTTTTACCCTAAATACATACTTGTATTTCTTTAAAGTCTCAAGCATTTTTAACATCACAAGCTTCAAAAGTCTATCTTTCTTTCTTATATTCCGTGTCAAGTCAAACTACGCCATATAATCGAAATGGAGGGAGTATTAGCTAATCAGAACTTTGAGTAACAAAAAAAAAGAAAGAAAAAAGCCTATCATTTACTTTGGAAATGCGAAGTAACTATAGGATCCTTTGATAAGATAATCTAGTTATAAATTATTAAGGTTGTTGTTTTCTTCAGTTCTATGCCAAGTGAACTCAAATATTACAAGTTCTGTTTAATTAATTTTTGTTACCAATTGTGGGAAAATGGATAATCCCCAATGTTTTCCTCCTTTTATTATAGGGAATACCCTGTATATTTCTTTAGTATTGGTTATATCAAATATTCTTTATATTGTATAAGTATTAGTCTTGTATTTTCGTATTCTTAGATTTCTATTTCTATGGGTGATTCTTTAGCTTTGATTATAGTATTTTCTTCTTGTTATCCATGCTTTTTGTCGTCTTCTTTTTCATATGTTTTGAGCTAAGGGTCTATAGGAAACAACCTCTCTAAGGTAGGGCTAAGGTTTGTGTACGCACAACCCTCCTCAGACCCCACTTGTGGGATTACACTGGCTATGTTGTTGTTCACTTTTAAGTTGTTCAGGCTCTTCAAAAATGTCGACAGGTGCGTGGAGGATCCTCCAAAAATAGTGTATTTTTGAAGGATCCAACACGGGTGCTGCTTTTCGGAGAGTCCGAGCAACTTAGGTCACTCACTTTACTTTGCATTTCTTGTTTTTCTTGCTTCAGCTTTGTTTTACCGTTCAAATATTGTTTCCATGGGACTGGAAGCCTATCGTAAAGCATTTTTGAGACTTCTATTAGTGTATATATTAATAAGAGCTACTGAAATTAAAGGGTTTCATCTTATTAATGTTCTTTGTATGGGCAACAGTCGACACAATCTTCTCTCGTAGTCTAATTGAGATACTGTCAAAACAAAAGCAAATTCGTAATTGGAAAGAGCAGTGATAGAATGTACAGAGCCTCAACTAATATGTCCATGCCTTACTGTGTTAATTATATAATCTTCATTTCCATCACTTCACATTCTGCAATCTGCGCTTAAGATGTAAACACAAGCATATAGATACTAACCTGCGAAGACAGATTCATGATGCCATATTTGTTAAGTTCAAGCCAAACAATTTTGTTCTAGAGATAATTCTATGAAAATCTGCCAATAACTGCCCTTAAAACTGTTTCTCCACTTTTACAGTTAGGTGGCTGCAACTAATTTTGAGGCGAAGATGTGCAGACAGAGGACATAGTTTTTCGACGTCTGGCTTACATTTGGGTGATTTCTTTTGCATGTATGGTATAACTGACACAGTTTTCTGGAATTATAAGTGTATTCTGCAAATGACATCTTTAATTAATGATCATTAGACATTGGAGGCTAATGCGTGGATTGGCTTACTACCTTGATACTGAATGTAAACATTTGCAGACTATGCATTATAAAATTTTGGTCCATCTGTTTGAGAATCTGTCAA</genome_strand>
        <mrna_strand>CAATTTTTAGACCTTTTTTTTTTTTCCAAATTTTGGAAACAAAACAATGGCTGGAGCAGGAGCACTTATCGTGAAAAAAATCCCACGCATCAAATTTCCTCAACAACACCCAAAAGCTTCTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATGCAGCAAAACTCACAACACATGAAAACTTCCGCAACTGATGATGTTCCTCAAACATTCTTCTCAAAATCCCCATCTACCACGTCTGTTGCAGGGAAGGCTTCTGACCAACCTAAAAAAACACCGGGGTCTCAGGAGGAAATTGAGCCCATTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGGGGCTGCAACTAATTTTGAGGCAAAAATGTGCAAACAAAGGACATAGTTTTTCAACGTCGGGCTTACATTTGGGGGATTTCTTTTGCATGTATGGAATAACTGACACAGTTTTCTGGAATTATAAGGGTATTCTGCAAATGACATCTTTAATTAATGATCATTAAACATTGGAGGCTAATGCGGGGATTGGCTTACTACCTTGATACTGAATGTAAACATTTGCAAACTATGCATTATAAAATTTTGGCCCATCTGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699985" ref_strand="+" ref_description="SGN-E699985 [FA11DB07]">
      <seq>ctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaaaatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataaaaaatgcaaaaaaacttttgtgcaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19433" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19133" g_stop="18204" g_length="930"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="930" r_length="930" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E699985" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19133" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>CTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAAATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAAAAATGCAAAAAAACTTTTGTGCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733030" ref_strand="+" ref_description="SGN-E733030 [LB03DB07]">
      <seq>caataaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttggggtgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcaaaaaaacttttgtgcaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19397" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19098" g_stop="18204" g_length="895"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="896" polyA_stop="905"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E733030" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19098" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>CAATAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGGTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAAAAAAACTTTTGTGCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234008" ref_strand="+" ref_description="SGN-E234008 [cLEL-8-C23](-)">
      <seq>acccaagaaaacagaatcaagtatggtttctgggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataacaaatgcagaaaaacttttgtgcaggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18948" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18648" g_stop="18204" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="459"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E234008" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18648" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAAGAAAACAGAATCAAGTATGGTTTCT-GGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>ACCCAAGAAAACAGAATCAAGTATGGTTTCTGGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAACAAATGCAGAAAAACTTTTGTGCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273899" ref_strand="-" ref_description="SGN-E273899 [cLEN-7-B5]">
      <seq>aagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaggaaaaaaaaaaaaaaaaaaaaaaactcgagactagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18944" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18644" g_stop="18204" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="461"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E273899" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273899" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18644" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>AAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234261" ref_strand="+" ref_description="SGN-E234261 [cLEL-8-C23](-)">
      <seq>agaatcagtatggtttctggttttaatcaaagtctttgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18936" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18636" g_stop="18204" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="444"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E234261" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18636" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>AGAATC-AGTATGGTTTCTGGTTTTAATCAAAGTCTT-TGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219930" ref_strand="+" ref_description="SGN-E219930 [cLEL-24-E10](-)">
      <seq>aaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18888" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18588" g_stop="18204" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="404"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E219930" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18588" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>AAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217808" ref_strand="+" ref_description="SGN-E217808 [cLEL-23-L15](-)">
      <seq>gatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18855" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18555" g_stop="18204" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="367"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E217808" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18555" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>GATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219786" ref_strand="+" ref_description="SGN-E219786 [cLEL-24-E10](-)">
      <seq>atgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18854" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18554" g_stop="18204" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="370"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E219786" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18554" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>ATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717181" ref_strand="+" ref_description="SGN-E717181 [FB19BD08]">
      <seq>ctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtctttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19292" stop="17907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18992" g_stop="18207" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E717181" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18992" e_stop="18207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGA</genome_strand>
        <mrna_strand>CTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTC-TTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218308" ref_strand="+" ref_description="SGN-E218308 [cLEL-23-L15](-)">
      <seq>acctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="18861" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18561" g_stop="18213" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="373"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E218308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18561" e_stop="18213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGT</genome_strand>
        <mrna_strand>ACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730979" ref_strand="+" ref_description="SGN-E730979 [LA25DB10]">
      <seq>cctttaattctcatctcatcctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactggcataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19452" stop="18064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19153" g_stop="18364" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E730979" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19153" e_stop="18364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACT</genome_strand>
        <mrna_strand>CCTTTAATTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGCATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277338" ref_strand="+" ref_description="SGN-E277338 [cLER-3-E9]">
      <seq>atagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19163" stop="18065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18863" g_stop="18365" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E277338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18863" e_stop="18365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATAC</genome_strand>
        <mrna_strand>ATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285319" ref_strand="+" ref_description="SGN-E285319 [cLER-20-E10]">
      <seq>ctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19375" stop="18264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19075" g_stop="18564" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E285319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19075" e_stop="18564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTG</genome_strand>
        <mrna_strand>CTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281131" ref_strand="+" ref_description="SGN-E281131 [cLER-7-F9]">
      <seq>aaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19393" stop="18288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19093" g_stop="18588" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E281131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19093" e_stop="18588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCA</genome_strand>
        <mrna_strand>AAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291875" ref_strand="+" ref_description="SGN-E291875 [cLET-7-P11]">
      <seq>ttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgatcatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaaaggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19401" stop="18302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19101" g_stop="18602" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E291875" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19101" e_stop="18602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTC</genome_strand>
        <mrna_strand>TTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATCATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAAGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289838" ref_strand="+" ref_description="SGN-E289838 [cLET-9-B22]">
      <seq>ttctttaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaacgagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19404" stop="18352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19104" g_stop="18652" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E289838" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19104" e_stop="18652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACC</genome_strand>
        <mrna_strand>TTCTTTAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAACGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295002" ref_strand="+" ref_description="SGN-E295002 [cLET-17-L24]">
      <seq>aaaaacagattggtggtcaaaatttgaaaggacaaattacagtttcccatttctacttttcatctaatcctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttctttctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggacgtagaggtctgtgtaatggagaagagggtatatagaaagagctcaaaaagtcgatttccgaagaacaaaaggcagtatgatcagcagcagcagcagctagtgatgatgataatcaataaaacaaggagactggggagataccggaggacggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19502" stop="18437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19202" g_stop="18737" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E295002" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19202" e_stop="18737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTG</genome_strand>
        <mrna_strand>AAAAACAGATTGGTGGTCAAAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTTTCATCTAATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTTCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGACGTAGAGGTCTGTGTAATGGAGAAGAGGGTATATAGAAAGAGCTCAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTATGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAATAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210026" ref_strand="+" ref_description="SGN-E210026 [cLEC-40-N22]">
      <seq>aaaaacagattggtggtcagaatttgaaaggacaaattacagtttcccatttctacttctcatctcatcctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttgggcaatctgtcaatctcaacctcagtagtagtgttcatacccaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaagtctgtgtaatggagaagagggtttagagaaagagctaaaaaagtcgatttcccaagaacaaaaggcagtacgatcagccgcagccgcagctagtgatgatgataatcaagaaaacaaggagactggggagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19502" stop="18453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19202" g_stop="18753" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E210026" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19202" e_stop="18753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATA</genome_strand>
        <mrna_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGGCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCCAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAAGTCTGTGTAATGGAGAAGAGGGTTTAGAGAAAGAGCTAAAAAAGTCGATTTCCCAAGAACAAAAGGCAGTACGATCAGCCGCAGCCGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293802" ref_strand="+" ref_description="SGN-E293802 [cLET-37-G8]">
      <seq>ttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19404" stop="18645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19104" g_stop="18945" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E293802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19104" e_stop="18945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCT</genome_strand>
        <mrna_strand>TTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257186" ref_strand="+" ref_description="SGN-E257186 [cLEG-46-N17]">
      <seq>tctggggttgacagcccatcaatgtttggctctttggacgacgacagtatagggaagtctaccaatcgtcacagaagaatcaatgatccgactataggaagaatgcaaggaaatgcttggaagggggttccaaattggccgtcacctctggcaaatggtttcatgcctttccagcatggtccacctcctgttggtttccatcccgcaatgcatcagtttcctggaccaccaatgttctgtgttacgccttcaatggacttgagtcaccctggggttccttaccatatgccagatgcagaccgcttttctggtcatgggcgcccaatgggttggcgaactccactatatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaacgccagactgggaccagaatatgacattgtccaacaatagtccgagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaagacgtctgttcaattcagggccctgataattcttttgcttctcagttggctcatcaagctctgggtgaacaaaagcagactgatccagatgctgaaagcaatatatcagttttcagtccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="27799" stop="29061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28099" g_stop="28761" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E257186" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28099" e_stop="28761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGC</genome_strand>
        <mrna_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTATAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCATCAGTTTCCTGGACCACCAATGTTCTGTGTTACGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGTCATGGGCGCCCAATGGGTTGGCGAACTCCACTATATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAACGCCAGACTGGGACCAGAATATGACATTGTCCAACAATAGTCCGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAAGACGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCATCAAGCTCTGGGTGAACAAAAGCAGACTGATCCAGATGCTGAAAGCAAT-ATATCAGTTTTCAGTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245220" ref_strand="+" ref_description="SGN-E245220 [cLEF-13-J24]">
      <seq>cgcaatgcatcagtttcctggaccaccaatgttcggtgttaggccttcaatggacttgagtcaccctggggttccttaccatatgccagatgcagaccgcttttctggccatgggcgcccaatgggttggcgaactccactagatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaaggccagactgggaccagaataggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcaattttcagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28002" stop="29058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28302" g_stop="28758" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E245220" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28302" e_stop="28758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCC</genome_strand>
        <mrna_strand>CGCAATGCATCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAATTTTCAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549820" ref_strand="+" ref_description="SGN-E549820 [TUS-6-B5]">
      <seq>taggccttcactggacttgagtcaccctggggttccttaccatatgccagatgcagaccgcttttctggccatgggcgcccaatgggttggcgaactccactagatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaaggccagactgggaccagaataggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28041" stop="29094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28341" g_stop="28794" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E549820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28341" e_stop="28794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTG</genome_strand>
        <mrna_strand>TAGGCCTTCACTGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319989" ref_strand="+" ref_description="SGN-E319989 [cTOB-31-E7]">
      <seq>agatgcagaccgcttttctggccatgggcgcccaatgggttggcgaactccactagatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaaggccagactgggaccagaataggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttgaaaattaatcatgaagagcaaccaattgatgtgaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgattcacaaatggtggacattttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28089" stop="30017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28389" g_stop="28989" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="685" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="29717" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="749" r_length="64" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E319989" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28389" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="29717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTT</genome_strand>
        <mrna_strand>AGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTG-ATTCACAAATGGTGGACATTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737936" ref_strand="+" ref_description="SGN-E737936 [LC11DB02]">
      <seq>ggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttgaaaattaatgatgaagagcaaccaattgatgtgaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcangagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttcccactgagaaatcagattttcctactaccatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28238" stop="30313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28989" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="536" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30013" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="897" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E737936" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATG</genome_strand>
        <mrna_strand>GGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATGATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCANGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCCACTGAGAAATCAGATTTTCCTACTACCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261912" ref_strand="+" ref_description="SGN-E261912 [cLEG-61-P22]">
      <seq>tcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttgaaaattaatcatgaagagcaaccaattgatgtgaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctggaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28369" stop="30307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28669" g_stop="28989" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="405" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30007" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="761" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E261912" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28669" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCT-GAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCA</genome_strand>
        <mrna_strand>TCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378824" ref_strand="+" ref_description="SGN-E378824 [TUS-1-P12]">
      <seq>gaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgnntccattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28527" stop="30427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28827" g_stop="28989" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="247" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30127" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="722" r_length="475" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E378824" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28827" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCG</genome_strand>
        <mrna_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGNNTCCATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379995" ref_strand="+" ref_description="SGN-E379995 [TUS-1-P11]">
      <seq>gaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccnattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28527" stop="30423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28827" g_stop="28989" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="247" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30123" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="718" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E379995" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28827" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCG</genome_strand>
        <mrna_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCNATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375852" ref_strand="+" ref_description="SGN-E375852 [TUS-15-C14]">
      <seq>gaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgcgtgagccaatgggttggaacccaggcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28527" stop="30237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28827" g_stop="28989" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="247" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="29937" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="532" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E375852" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28827" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="29937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAG</genome_strand>
        <mrna_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGCGTGAGCCAATGGGTTGGAACCCAGGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201726" ref_strand="+" ref_description="SGN-E201726 [cLEC-11-M13]">
      <seq>gaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtcaacttgaatgctccggtctggtggatgatgcgctagtataagagggtgatgaggggactgatctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28527" stop="30149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28827" g_stop="28989" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="247" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="29849" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="444" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E201726" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28827" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="29849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCT</genome_strand>
        <mrna_strand>GAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTCAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTATAAGAGGGTGATGAGGGGACTGATCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263592" ref_strand="+" ref_description="SGN-E263592 [cLEG-60-P13]">
      <seq>ctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="28597" stop="30481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28897" g_stop="28989" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="177" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30181" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="706" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E263592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28897" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATA</genome_strand>
        <mrna_strand>CTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735959" ref_strand="+" ref_description="SGN-E735959 [LC03DD04]">
      <seq>cgctcaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatgccccttttatattcccgtcttctgttttgtctgcttgctgctctttanctaatcaataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29394" stop="30810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29692" g_stop="30510" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E735959" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29692" e_stop="30510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACT</genome_strand>
        <mrna_strand>CGCTCAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTANCTAATCAATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735496" ref_strand="+" ref_description="SGN-E735496 [LC01DD04]">
      <seq>cacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatgccccttttatattcccgtcttctgttttgtctgcttgctgctctttagctaatcaataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29394" stop="30810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29694" g_stop="30510" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E735496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29694" e_stop="30510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACT</genome_strand>
        <mrna_strand>CACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379032" ref_strand="+" ref_description="SGN-E379032 [TUS-1-P11](-)">
      <seq>attagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatggaccttttatattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29454" stop="30763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29754" g_stop="30463" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E379032" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29754" e_stop="30463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCC</genome_strand>
        <mrna_strand>ATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGGACCTTTTATATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379651" ref_strand="+" ref_description="SGN-E379651 [TUS-1-P12](-)">
      <seq>tgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactatcacaaaccacacttcaggagctgtgtgagccaatgggtctgaacccaggcgagaaatcagatctcccttctagcttggacgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29511" stop="30733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29811" g_stop="30433" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E379651" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29811" e_stop="30433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCC</genome_strand>
        <mrna_strand>TGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTATCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTCTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGACGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375851" ref_strand="+" ref_description="SGN-E375851 [TUS-15-C14](-)">
      <seq>actttcacaaaccacacttcagaagctgtgtgagccaatgggtgtgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatgccccttttatattcccgtcttctgttttgtctgcttgctgctctttagctaatcaataaaactcagagttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29580" stop="30824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29880" g_stop="30531" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E375851" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29880" e_stop="30531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTTATGCTCTT</genome_strand>
        <mrna_strand>ACTTTCACAAACCACACTTCAGAAGCTGTGTGAGCCAATGGGTGTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549806" ref_strand="+" ref_description="SGN-E549806 [TUS-6-B5](-)">
      <seq>aggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccaaggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="29600" stop="30605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29900" g_stop="30305" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E549806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29900" e_stop="30305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATG</genome_strand>
        <mrna_strand>AGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCAAGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712139" ref_strand="+" ref_description="SGN-E712139 [FB04AA09]">
      <seq>ctgctttggaagaaagagaagctcatttaaaagctcaattagaacatattgacgaaatactgcagtctgctcgcatgtcgggttatttgtatctgagaacgagatgggaggctttaccaggcgaacctcttccaatcgatgatgacactgaagttgatgactggcttcctaaatttcttgttcttcagggatcgggtattttcttgtattcatcatccatagatctgagtcctcaagactcaactcttctatctgatgttgttgaagttggagccatgccttgtctgacacgagacaacggtgatactcgatattgcttttttatttcaactcgtcatgggctgagatatgaatgctcaagtgcttccaaaatacaggttgattcctggttggcgtcattaccgaatcattctgatctgcaatctaactgcaccgcgcctgatgagttgaccaatacttgacatctttttctgtcagtattcggtagcaacaacctgtaaatagaccagaaattgaagcaaagacagcattattattcactttggaagtttgattgaacaacttttagcatttatccattattctgtacatagcttatttaactgtcattgtcaagttactactacttgtataaataaaatgtattcacagtttcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="34485" stop="38444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34785" g_stop="34821" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34822" i_stop="35760" i_length="939">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35761" g_stop="35824" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="101" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35825" i_stop="35917" i_length="93">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35918" g_stop="36038" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="222" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36039" i_stop="37204" i_length="1166">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37205" g_stop="37359" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="377" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37360" i_stop="37861" i_length="502">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37862" g_stop="38153" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="669" r_length="292" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E712139" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34785" e_stop="34821"/>
          <exon e_start="35761" e_stop="35824"/>
          <exon e_start="35918" e_stop="36038"/>
          <exon e_start="37205" e_stop="37359"/>
          <exon e_start="37862" e_stop="38153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCAGTATGTTTTGATGCTTTAATTGTGTTCTCTCATTATCTACACTAATTACAATGTGAATTCATAGGTTTACAGCAAAAGCATAAAAGCTTCGGTAAGTTCTTTTTTTCCTTAGGTGACTTGGCCTTTAAACATAGAATCTTTCTATCACATTTATAAGACGTGCAGAATGTGCTAAGGTGGACTATGACATGCACGTATAATGAAACTGCCTTATATGCCCAAACTCTCTACATATGAACTTGCTTCAGTCTTTAGTTATGAAAATCCTTTTGGTAAGAGGACACATCCTGAGTGCATCTTCACATGTGGGTACATAGAACCATCGGGGATAGTTGATAGGATAAATAAGAGACAAATAACAGTAAGCAGGAAGTTCCTGTCATCTGCCAACTTGGGAACTTAGGGTCGAATCCCAGCAAGAGGCGACATTAGATGAATTCTTCCCACCTACCTAAACCTTGATGGCAGAGCTACCTAGTGCCTGGCTGGTTGGAGGCAGCTGATACTTGGTGGACTAGTTGAGGTGCACACGAGTTGGCCTGGGCACTGCCATTATAAAAAGAAATAAATAAAAGGAAAATTTTGGAGTAGGAAATGTGAACACCCTTCAAGATATTGCCGTGAGAGTTCTCTTCAATGAACTAAGACACTTCCGGTCCATGCTTTTAAAACAAGAAAGAACACATTGGGAAAATGAATAATATTGTATTTCTAGGTAGTAGAAAGTTTAGATGTAACTGTAACATGGAATGACTGGCTTTCTACTTGATGAGGAAAGACCTAACAACAACTTACCCAGTGTATCCCATATGAGCTATCAATATGATGGCATCCTTTGGAACAACCTCCAGTATCTTTTATTGAGAATTCATGGATTTGTCTAAAGCAGTACTATTATTTGAGGTTGTGATATATATATATATATCTTTCTATTCACAGATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACGGTACTGAAATACCAAACATCTGTCCTTTTCTTGTTATCTCTTGGACTTATCAGACTTAAATTATGAAATCTTATTCTTGCTTTTGATCGACAGAGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAGGTAATTATACGGGAACTTCCAATTTCAGAAGTCACATTTTTTTTTGGTATTGCCCTATTTTGGTGTAAGTGCATTATTCCAAACTTTTGATGTGTACCATTACTCTCTGTGTTTTGCCTCTTCCCTTTATTGGCCAATTCTGAGTTCCTCATAGAAGGCCAAATCTTCCAACTATTTATCAGGAAAGTCTAGAAATCTCAAACGATGTCTTATAAGCTTATGCTGATTAATGGCATTCATTGTAGTATGATGGACGTCAAATTTGCTCATATAGTTTGACACCCTTTAAGTGTCTCTTGAATTTTGATCGACTTCTATGTGATTTTAGTTATTAGAGATGGAAATTCAAACCCTCAACACAAAGGACACTGTCTCTCAACCTCACAAACCCCTCGTGATCAGGTGGGTGAAATTTTTGTCCACGCCCACCAGTGGGCAGTGGCACTTGCACCGTCCTTGTGGTTTTGATGCAATATAACTGTACTTGTATCTTCCCTATTAATCAACATCAAAATTAAAAATCAATTAAGAATATATACGAGCATAATGGGCGAACAAACAGGAAGAGGGTGAATGGAAACAGACACAAGAATGTTGAAGACAGTGGTGGAAGATATGAAGACACAAGGAGGGAAATAGTTAATTCGTTTTAGGTAGAGAATGGTGTGTTGGTATGCCTAAATAACTTATATGATACCCTCCTCCTGCCCCACAGTCTATATGGTTTGATGAAATTCCAAAAACTCATCCTCCAAACTCCCCTGTTCATGTATGTAGGTGGAATAGGAAAAGTACCTATGGTAAGGGTAGAAATTGTCATCTCTATTTGGTATAGCTCACTGTTAAGTTATATTGGGATTGGCTGACCGTTTAGTTGCATATACATAACTAATAACGAGCTCCATGAATCTGATGTAGAGATTGTCATCTCTGTTTGGTATATCATATTAGGTTATGCTGGGATTCTAATTGCGTATCTTTTAATTCCTCGTGAGCCAATGCATCTCTATCTTCTCTTTGATTTAATAGACGCCCATAATATCTTTAATTTACTTGGACAATCTGATATCAACTAGCACAATGAAGAATTTTCTGATATCTGTTAACACAACAAAGAGGCTATGTCATGAAAACATTTGACTCTATAACTACTAAACATGATACAGATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAGGTAATGGTTGTACCTGGATCATCTACTGCTATTACCTAGTCTTGGTATCTTCTTCTATGTGTTGATGTGTGAAGTTAATAAATAGACCTTCGAGTAAACGCGAATTCATACGCACCTCTACGTGTATATGATCTTTTCCATTATTTCTAGGCATGATTTTATGGAGTACAAACTATCTGTTAGTAGTACTAAAAGTCTTGCCTTGTTCTCTGGTCATGAAATGCTTTATCTGAATCCTGTCTTTTCGAATCAGTATCCCATGAACGATCTTAGAAGTCCATCATCATAAGCAGATGCGAGGAGTATGTCTCAGTAACACACATGTATTTATCAGGAAAGTAGTAACATAGGTGTCAAAGTAGCATGTTATAAGCCTGTTTGTTTGTTCGTTTTAGTGCTTTGCTCTCGAGAATGTTGTCTTCCCATAACTAAAACCGTATCTATAGATTCATCACATTGCTTTCATTATCCCGTCGCAAGCTATAGAATCTTTGTTTTGCAGGTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTATTTCCACTA</genome_strand>
        <mrna_strand>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACG.............................................................................................AGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705728" ref_strand="+" ref_description="SGN-E705728 [FA27DH09]">
      <seq>ctctctataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaaatatgcccattttttctatggcgagtagcaattttacatttagtatactatttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39207" stop="42666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39507" g_stop="39644" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="273" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="311" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="362" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="530" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="643" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42366" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="900" r_length="257" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E705728" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39507" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAAT</genome_strand>
        <mrna_strand>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAAATATGCCCATTTTTTCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729338" ref_strand="+" ref_description="SGN-E729338 [LA20DA08]">
      <seq>gctctataacttccaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39209" stop="42475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39508" g_stop="39644" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="271" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="309" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="360" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="528" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="641" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="707" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E729338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39508" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACC</genome_strand>
        <mrna_strand>GCTCTATAACTTC-CAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707599" ref_strand="+" ref_description="SGN-E707599 [FA33BH02]">
      <seq>ctattacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgagggggtagcaactcatatatcaaaataatgccaattttttctatggcgagtagcaattttacatttagtatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39211" stop="42658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39511" g_stop="39644" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="269" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="307" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="358" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="526" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="639" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42358" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="888" r_length="249" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E707599" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39511" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGA-GGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTA</genome_strand>
        <mrna_strand>CTATTACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGGTAGC-AACTCATATATCAAAATAATGCCAATTTTTTCTATGGCGAGTAGCAATTTTACATTTAGTATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731387" ref_strand="+" ref_description="SGN-E731387 [LA26DH06]">
      <seq>ctataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaagggtagcaaactcatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39211" stop="42604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39511" g_stop="39644" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="269" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="307" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="358" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="526" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="639" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42304" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="834" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E731387" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39511" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATC</genome_strand>
        <mrna_strand>CTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAAGGGTAGCAAACTCATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692832" ref_strand="+" ref_description="SGN-E692832 [LH_Ea09L22]">
      <seq>tataacttcacattttttttactttctctctctaaaaagctcagagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatccaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39235" stop="42569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39512" g_stop="39644" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="269" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="307" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="358" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="526" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="639" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42269" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="799" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692832" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39512" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTCACAATTTTTTT-GACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCA</genome_strand>
        <mrna_strand>TATAACTTCACATTTTTTTTACTTTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCCAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709557" ref_strand="+" ref_description="SGN-E709557 [FA52BG01]">
      <seq>ataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39213" stop="42607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39644" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="267" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="305" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="356" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="524" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="637" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42307" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="835" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E709557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAA</genome_strand>
        <mrna_strand>ATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311479" ref_strand="+" ref_description="SGN-E311479 [cLEZ-18-D16]">
      <seq>ataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39213" stop="42280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39644" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="267" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="305" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="356" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="524" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41980" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="604" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E311479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAAC</genome_strand>
        <mrna_strand>ATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354692" ref_strand="+" ref_description="SGN-E354692 [cLHT-5-N14]">
      <seq>atcacttcacaattttttttgactttctctctctaaaaagctcagagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39213" stop="41984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39644" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="270" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="308" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="359" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41684" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="402" r_length="43" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E354692" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTCACAA-TTTTTTTGAC--TCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGC</genome_strand>
        <mrna_strand>ATCACTTCACAATTTTTTTTGACTTTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727343" ref_strand="+" ref_description="SGN-E727343 [LA14BG04]">
      <seq>cgcttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatgggcgagtagcattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacatttgaatcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39217" stop="42730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39515" g_stop="39644" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="265" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="303" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="354" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="522" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="635" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42429" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="955" r_length="320" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="956" polyA_stop="970"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727343" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39515" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAT-GGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATT</genome_strand>
        <mrna_strand>CGCTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGGCGAGTAGC-ATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTTGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727785" ref_strand="+" ref_description="SGN-E727785 [LA15CH10]">
      <seq>cgttcacaatttttttgactctctctctaaaaagctcggagatgaattctcagatttgcagatctgctacaatagcaactaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaagacgagcagcagctgcggcagccacagttacattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaaaaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccgaggaatttgcagagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgcccatttttcctatgccgagtaccaattttacatttagtatactatttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39218" stop="42665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39516" g_stop="39644" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="264" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="302" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="521" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="634" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42365" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="890" r_length="256" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727785" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39516" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAA</genome_strand>
        <mrna_strand>CGTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCGGAGATGAATTCTCAGATTTGCAGATCTGCTACAATAGCAACTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACGAGCAGCAGCTGCGGCAGCCACAGTTACATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAAAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCGAGGAATTTGCAGAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCCATTTTTCCTATGCCGAGTACCAATTTTACATTTAGTATACTATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555225" ref_strand="+" ref_description="SGN-E555225 [cTSC-6-M8]">
      <seq>acttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcattcatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39216" stop="42641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39516" g_stop="39644" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="264" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="302" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="521" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="634" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42341" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="866" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E555225" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39516" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATT</genome_strand>
        <mrna_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATTCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727862" ref_strand="+" ref_description="SGN-E727862 [LA15DH10]">
      <seq>acttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgcccaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39216" stop="42622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39516" g_stop="39644" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="264" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="302" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="521" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="634" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42322" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="848" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39516" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATG-CCAATTTTT</genome_strand>
        <mrna_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCCAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295952" ref_strand="+" ref_description="SGN-E295952 [cLET-27-C15]">
      <seq>acttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39216" stop="42111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39516" g_stop="39644" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="264" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="302" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="521" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41909" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="530" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E295952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39516" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAA</genome_strand>
        <mrna_strand>ACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727452" ref_strand="+" ref_description="SGN-E727452 [LA14CH10]">
      <seq>ttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgcccatttttcctatggcgagtagcaattttacatttagtatactatttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39218" stop="42666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39518" g_stop="39644" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="262" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="300" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="351" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="519" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="632" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42366" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="889" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727452" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39518" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAAT</genome_strand>
        <mrna_strand>TTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCCATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249851" ref_strand="+" ref_description="SGN-E249851 [cLEF-57-M10]">
      <seq>ttcacaattttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39218" stop="42278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39518" g_stop="39644" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="263" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="301" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="352" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="520" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="598" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E249851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39518" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAA-TTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGA</genome_strand>
        <mrna_strand>TTCACAATTTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692302" ref_strand="+" ref_description="SGN-E692302 [LH_Ea08F20]">
      <seq>cgtttttttttactttctctctctaaaaagctcagagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatccaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgagggggtagcaactcctatatcaaattaatgccaatttttcctaaggcgagtagcaattttacatttagtatactattttaaaatcaccacaataatatgtatttgaaacaatggaccttcttttatgaattgaaaacattggatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39235" stop="42727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39520" g_stop="39644" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="260" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="298" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="349" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="517" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="630" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42417" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="940" r_length="310" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="951" polyA_stop="962"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692302" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39520" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGA-GGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTT-AAAATCACCACAATAATATGTATTTGAAACAAT-GAACTCCATTTATGTATTGAAAC</genome_strand>
        <mrna_strand>CGTTTTTTTTTACTTTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCCAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGGTAGC-AACTCCTATATCAAATTAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTTAAAATCACCACAATAATATGTATTTGAAACAATGGACCTTCTTTTATGAATTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705048" ref_strand="+" ref_description="SGN-E705048 [FA26AA12]">
      <seq>cacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccnatttttcctatggcgagtagcaattttacatttagtatactattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39220" stop="42662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39520" g_stop="39644" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="260" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="298" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="349" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="517" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="630" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42362" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="883" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E705048" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39520" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTA</genome_strand>
        <mrna_strand>CACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCNATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706727" ref_strand="+" ref_description="SGN-E706727 [FA30DA09]">
      <seq>cgaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39223" stop="42626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39521" g_stop="39644" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="259" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="297" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="348" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="516" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="629" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42326" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="846" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E706727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39521" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTA</genome_strand>
        <mrna_strand>CGAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689982" ref_strand="+" ref_description="SGN-E689982 [LH_Ea02F04]">
      <seq>ttatattttactttctctctctaaaaagctcaaagatcctttctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcgtccaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgaaaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctacagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcgagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccgccgatccacagaaatctgaacctggaaccatcacaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttacaccacaggagttggttaagtacaccaacaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattattctaattaattgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39235" stop="42569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39522" g_stop="39644" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="258" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="296" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="347" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="515" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="628" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42269" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="788" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E689982" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39522" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCA</genome_strand>
        <mrna_strand>TTATATTTTACTTTCTCTCTCTAAAAAGCTCAAAGATCCTTTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCGTCCAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAAAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTACAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCGAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCGCCGATCCACAGAAATCTGAACCTGGAACCATCACAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTACACCACAGGAGTTGGTTAAGTACACCAACAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTATTCTAATTAATTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728233" ref_strand="+" ref_description="SGN-E728233 [LA17AE08]">
      <seq>caatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcanaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattnatctaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39222" stop="42565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39522" g_stop="39644" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="258" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="296" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="347" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="515" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="628" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42265" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="784" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E728233" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39522" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATT</genome_strand>
        <mrna_strand>CAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCANAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTNATCTAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212658" ref_strand="+" ref_description="SGN-E212658 [cLEC-73-K9]">
      <seq>aatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctagcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39223" stop="42506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39523" g_stop="39644" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="257" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="295" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="346" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="514" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42206" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="724" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E212658" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39523" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCT</genome_strand>
        <mrna_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTAGCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323578" ref_strand="+" ref_description="SGN-E323578 [cTOC-2-H17]">
      <seq>aatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39223" stop="42109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39523" g_stop="39644" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="257" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="295" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="346" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="514" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E323578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39523" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG</genome_strand>
        <mrna_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212770" ref_strand="+" ref_description="SGN-E212770 [cLEC-73-L8]">
      <seq>aatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39223" stop="42091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39523" g_stop="39644" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="257" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="295" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="346" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41791" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="496" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E212770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39523" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCT</genome_strand>
        <mrna_strand>AATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704740" ref_strand="+" ref_description="SGN-E704740 [FA25AE07]">
      <seq>atttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataaccaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39224" stop="42609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39524" g_stop="39644" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="294" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="513" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="626" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42309" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="826" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E704740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39524" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAAT</genome_strand>
        <mrna_strand>ATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACCAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318296" ref_strand="+" ref_description="SGN-E318296 [cTOA-29-P21]">
      <seq>atttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaaggacatcatccatggcagcgatggccccgagaccgcaaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39224" stop="42453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39524" g_stop="39644" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="294" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="513" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="626" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42153" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="670" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E318296" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39524" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATG</genome_strand>
        <mrna_strand>ATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAA................................................................................................GGACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290322" ref_strand="+" ref_description="SGN-E290322 [cLES-20-G5]">
      <seq>ttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39226" stop="42249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39526" g_stop="39644" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="292" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="343" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="511" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41949" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="560" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E290322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39526" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAG</genome_strand>
        <mrna_strand>TTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281745" ref_strand="+" ref_description="SGN-E281745 [cLER-14-I21]">
      <seq>tttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39227" stop="42065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39527" g_stop="39644" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="253" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="291" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="342" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="466" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E281745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39527" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTA</genome_strand>
        <mrna_strand>TTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306760" ref_strand="+" ref_description="SGN-E306760 [cLEY-19-N23]">
      <seq>ttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgttaattttccccggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctggaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39228" stop="42245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39528" g_stop="39644" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="252" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="290" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="341" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41634" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41635" g_stop="41809" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="515" r_length="174" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41945" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="560" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E306760" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39528" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41635" e_stop="41809"/>
          <exon e_start="41901" e_stop="41945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATC</genome_strand>
        <mrna_strand>TTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG.....................................................................................................................................................................................ATTTCAGAAATCGTTAAT-TTTCCCCGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTGGAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285885" ref_strand="+" ref_description="SGN-E285885 [cLES-13-C3]">
      <seq>tttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39229" stop="41144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39529" g_stop="39644" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40844" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="154" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E285885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39529" e_stop="39644"/>
          <exon e_start="40807" e_stop="40844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTG</genome_strand>
        <mrna_strand>TTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296650" ref_strand="+" ref_description="SGN-E296650 [cLET-39-E23]">
      <seq>ttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39230" stop="42275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39530" g_stop="39644" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="250" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="288" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="339" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="507" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41975" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="582" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E296650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39530" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCT</genome_strand>
        <mrna_strand>TTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690974" ref_strand="+" ref_description="SGN-E690974 [LH_Ea04O12]">
      <seq>ttctcgtgccgaattcggcacgaggattttttttactctctctctctaaaaagctcagagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatccaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaggtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39234" stop="42613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39535" g_stop="39644" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="148" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="283" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="321" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="372" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="540" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="653" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42313" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="857" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E690974" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39535" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATG</genome_strand>
        <mrna_strand>TCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCCAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAGGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326342" ref_strand="+" ref_description="SGN-E326342 [cTOC-14-H14]">
      <seq>ctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39236" stop="42227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39536" g_stop="39644" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="282" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="333" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="501" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41927" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="528" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E326342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39536" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGA</genome_strand>
        <mrna_strand>CTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377463" ref_strand="+" ref_description="SGN-E377463 [TUS-20-D7]">
      <seq>aaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagagggagtggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39244" stop="42559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39544" g_stop="39644" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="236" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="274" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="325" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="493" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="606" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42259" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="756" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E377463" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39544" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAA</genome_strand>
        <mrna_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGGAGTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236175" ref_strand="+" ref_description="SGN-E236175 [cLED-20-E17]">
      <seq>aaaaagctcagagatgaattctcatatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccataagaggcgatttagctgttgtagtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39244" stop="42311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39544" g_stop="39644" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="236" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="274" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="325" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="493" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42011" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="604" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E236175" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39544" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGA</genome_strand>
        <mrna_strand>AAAAAGCTCAGAGATGAATTCTCATATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATAAGAGGCGATTTAGCTGTTGTAGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233180" ref_strand="+" ref_description="SGN-E233180 [cLED-6-H5]">
      <seq>aaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39244" stop="42269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39544" g_stop="39644" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="236" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="274" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="325" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="493" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41969" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="562" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E233180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39544" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCT</genome_strand>
        <mrna_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243428" ref_strand="+" ref_description="SGN-E243428 [cLED-34-A16]">
      <seq>aaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatnacggtttgagcgcaagggctttaagctggttgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39244" stop="41995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39544" g_stop="39644" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="236" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="274" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="325" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41695" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="379" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E243428" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39544" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATC</genome_strand>
        <mrna_strand>AAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATNACGGTTTGAGCGCAAGGGCTTTAAGCTGGTTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337465" ref_strand="+" ref_description="SGN-E337465 [cTOE-11-O12]">
      <seq>aagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39247" stop="41960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39547" g_stop="39644" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="233" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="271" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="322" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41660" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="341" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E337465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39547" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCAC</genome_strand>
        <mrna_strand>AAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696142" ref_strand="+" ref_description="SGN-E696142 [LH_Ea08F20](-)">
      <seq>cagagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatccaagcagacttctcgtgctttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaaaggacttcatttatgtattgaaacattgaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39252" stop="42727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39552" g_stop="39644" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="228" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="266" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="317" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="485" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="598" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42426" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="915" r_length="317" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="916" polyA_stop="931"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696142" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39552" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTC</genome_strand>
        <mrna_strand>CAGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCCAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAAAGGACTTCATTTATGTATTGAAACATTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316729" ref_strand="+" ref_description="SGN-E316729 [cTOB-5-D14]">
      <seq>agagatgaattctcagatttgcagatctgctactagtgcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcgcatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcggatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagatgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39253" stop="42111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39553" g_stop="39644" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="227" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="265" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="484" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E316729" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39553" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG</genome_strand>
        <mrna_strand>AGAGATGAATTCTCAGATTTGCAGATCTGCTACTAGTGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCGCATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGGATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGATGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367346" ref_strand="+" ref_description="SGN-E367346 [cLPT-7-K11]">
      <seq>agagatgaattctcagatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcatatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacgctttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39253" stop="42067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39553" g_stop="39644" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="227" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="265" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="442" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E367346" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39553" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAAC</genome_strand>
        <mrna_strand>AGAGATGAATTCTCAGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCATATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGCTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348957" ref_strand="+" ref_description="SGN-E348957 [cTOF-29-M4]">
      <seq>attctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39261" stop="42438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39561" g_stop="39644" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="219" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="257" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="308" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="476" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="590" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42138" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="619" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E348957" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39561" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTG-AAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCG</genome_strand>
        <mrna_strand>ATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258816" ref_strand="+" ref_description="SGN-E258816 [cLEG-50-H2]">
      <seq>ctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39264" stop="42100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39564" g_stop="39644" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="216" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="254" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="305" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41800" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="464" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E258816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39564" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTC</genome_strand>
        <mrna_strand>CTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324783" ref_strand="+" ref_description="SGN-E324783 [cTOC-8-G24]">
      <seq>tcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttancaatggtttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39265" stop="42111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39565" g_stop="39644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="215" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="253" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="304" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="472" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="480" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E324783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39565" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGA</genome_strand>
        <mrna_strand>TCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTANCAATG...........................................................................................GTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315053" ref_strand="+" ref_description="SGN-E315053 [cTOB-4-C10]">
      <seq>tcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39265" stop="42111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39565" g_stop="39644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="215" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="253" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="304" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="472" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="480" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E315053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39565" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="41908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGA</genome_strand>
        <mrna_strand>TCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359517" ref_strand="+" ref_description="SGN-E359517 [cLHT-31-H22]">
      <seq>tcagatttgcagatctgctaccaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccaccagtttcattgagaggagtggtgcccttctctagccctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgccttgcccttcctgcagcagcttacatgctccaggagcaagaagcaccatgctgccgagatggagcgcacctttattgccatcaagccagatggagtaccagagaggcctgatttcagaaatcgtatcacggtttgagccccagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39265" stop="42065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39565" g_stop="39644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="220" r_length="139" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="259" r_length="39" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="311" r_length="52" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="435" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E359517" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39565" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGCAGATCTGCTA-CAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCA-CAGTTTCATTGAGAGGAGTGGTG-CCTTCTCTAG-CCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTG-CTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCA-CATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTA-CAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTA</genome_strand>
        <mrna_strand>TCAGATTTGCAGATCTGCTACCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACCAGTTTCATTGAGAGGAGTGGTGCCCTTCTCTAGCCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACCATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACCAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCCCCAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337574" ref_strand="+" ref_description="SGN-E337574 [cTOE-11-O22]">
      <seq>agatttgcagatctgcttcaagagcagctaagtcactcctttctgcttcatctaagcagacttttcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgaaatggagcgcacctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39267" stop="41720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39567" g_stop="39644" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="213" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="251" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41420" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="269" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E337574" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39567" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATT</genome_strand>
        <mrna_strand>AGATTTGCAGATCTGCTTCAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTTTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAA...........................................................................................................ATGGAGCGCACCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344275" ref_strand="+" ref_description="SGN-E344275 [cTOF-16-K21]">
      <seq>agacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39324" stop="42656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39624" g_stop="39644" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="156" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="194" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="245" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="413" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="526" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42356" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="773" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E344275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39624" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATAC</genome_strand>
        <mrna_strand>AGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693822" ref_strand="+" ref_description="SGN-E693822 [LH_Ea02F04](-)">
      <seq>ttttcaggaggacgagcagcagctacagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaaaaaagttcatttatgtattgaaacattgaatttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40501" stop="131037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40800" g_stop="40941" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="180" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="231" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="399" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="512" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42447" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="848" r_length="336" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E693822" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40800" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAA</genome_strand>
        <mrna_strand>TTTTCAGGAGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAAAAAAGTTCATTTATGTATTGAAACATTGAATT--TCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696672" ref_strand="+" ref_description="SGN-E696672 [LH_Ea09L22](-)">
      <seq>aggacgagcagcagctacagcagccacagtttcattgagaggagtggtgctttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaaagagcttcatttatgtattgaaacattgaatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40508" stop="131034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40808" g_stop="40941" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="172" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="223" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="391" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="504" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42425" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="820" r_length="316" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42426" i_stop="43122" i_length="697">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43123" g_stop="43138" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="836" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696672" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40808" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42425"/>
          <exon e_start="43123" e_stop="43138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGATGCATCATGAAGTACTTCTTTCAATGTTAAAACGAACACTATTATTCATTAGTTAGATTGTCCAAGTGGCTTAAAGCGGAATGTGGGGAGGGGAGGATTTCATCTAAAAGCTTACCATATTGAATGTTTACGTCAAATAAATAGATGCATAATCATAGGAGTAACGATATGACATAATCATAATTCCTAACTCAACTAGGAAATATACAATAGGAGTAACTAGTTATATGATCAATTAACATTTATCATAAGTTGGTTGATTTTGACAGGGTTGAAGTCAAAACATTTACTAAGAGAATTTAATATATAAATAATTGAATACACAAATAAGTTAAGAAAACTTAAACATATACTAATATATACATATAATAGAAGTATTATTCAACGAGAGAAAGGATGACAATTGACTCTTCTTAAACAAGAATAGCTCAACGAGAGAAAGGATGACAATTGACTCTTCTTAAACAAGAATAGCTATGTGCTGATGCAGGTTCTACTATACGTTTTAATGCTCCAATTTTTTTCGTTATACTTCACGCCAAACATCTCCCTTTTTTTCAATCAAACAATTAATATAAGGTAAATATTTATTTTGTACTCATATTTGACATTTACACCTAAGTAAAATTAAATAAATAATTTTGACTAGTATTAACAGGCAAAAA</genome_strand>
        <mrna_strand>AGGACGAGCAGCAGCTACAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCTTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAAAGAGCTTCATTTATGTATTGAAACATTGAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297509" ref_strand="+" ref_description="SGN-E297509 [cLET-28-O10]">
      <seq>gcagctgcagcagccacagtttcattgagaggagaggcgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40518" stop="41739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40818" g_stop="40941" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="162" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41439" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="199" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E297509" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40818" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAG</genome_strand>
        <mrna_strand>GCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGAGGCGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249736" ref_strand="+" ref_description="SGN-E249736 [cLEF-57-C24]">
      <seq>agcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggaaccagaagcacatgctgccgagatggagcgcacctttattgccatcaagccaaatggagtacaaaaaggcctgatttcagaaatcgtatcacggtttgagcgccaaggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40526" stop="42066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40826" g_stop="40941" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="154" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="205" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41766" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="330" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E249736" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40826" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAA</genome_strand>
        <mrna_strand>AGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAACCAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAAATGGAGTACAAAAAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCCAAGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689611" ref_strand="+" ref_description="SGN-E689611 [LH_Ea01F17]">
      <seq>cattgcctcatatggcaggaatgaatctggaaatgcatctacagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcatagttcttgttccaatacaatgatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40564" stop="42755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40862" g_stop="40941" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="118" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="169" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="337" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="450" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42455" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="797" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E689611" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40862" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAA-TTCATTATTCTTGTTCCAATACAATGATCTAT</genome_strand>
        <mrna_strand>CATTGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTACAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTTCATAGTTCTTGTTCCAATACAATGATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693451" ref_strand="+" ref_description="SGN-E693451 [LH_Ea01F17](-)">
      <seq>gcttcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcatagttcttgttccaatacaatgatctatagcaataattggtggggatgcatcatgaagtactttcaatgttaaaactttcgttttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40566" stop="42790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40866" g_stop="40941" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="114" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="165" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="333" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="446" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42506" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="841" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="854" polyA_stop="870"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E693451" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40866" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAA-TTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGATGCATCATGAAGTACTTCTTTCAATGTTAAAAC</genome_strand>
        <mrna_strand>GCTTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTTCATAGTTCTTGTTCCAATACAATGATCTATAGCAATAATTGGTGGGGATGCATCATGAAGTA---CTTTCAATGTTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286474" ref_strand="+" ref_description="SGN-E286474 [cLES-12-C22]">
      <seq>cctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40567" stop="41999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40867" g_stop="40941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="113" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="164" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41699" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="222" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E286474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40867" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAG</genome_strand>
        <mrna_strand>CCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695687" ref_strand="+" ref_description="SGN-E695687 [LH_Ea07C21](-)">
      <seq>ctcatatggcaggaatgaatctggaaatgcatctagagcttggatttttggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctttggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccccccccccccagaaatttgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtacttttgcattaatttaattacttccccctaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccccaataatatgtatttgaaacaatgaacttcatttatgtattgaaaaaatgaatttcatagttctgttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40568" stop="131037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40868" g_stop="40941" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="112" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="163" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="331" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="444" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42458" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="793" r_length="349" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E695687" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40868" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGC</genome_strand>
        <mrna_strand>CTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTTTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTTTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCCCCCCCCCCCAGAAATTTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTTTTGCATTAATTTAATTACTTCCCCCTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCCCAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAAAAATGAATTTCATAGTTCTGTTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301168" ref_strand="+" ref_description="SGN-E301168 [cLEW-22-D7]">
      <seq>ctcgtgccgtggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40589" stop="42562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40879" g_stop="40941" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="100" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="151" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="319" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="432" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42262" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="585" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E301168" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40879" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTA</genome_strand>
        <mrna_strand>CTCGTG-CCGTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694814" ref_strand="+" ref_description="SGN-E694814 [LH_Ea04O12](-)">
      <seq>aaatgcatctagagcttggatttttggtgtccttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaccaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcatagttcttgttccaatacaatgatctatagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="40592" stop="131039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40892" g_stop="40941" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="88" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="139" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="307" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="420" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42110" g_stop="42462" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="774" r_length="354" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42463" i_stop="43122" i_length="660">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43123" g_stop="43138" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="790" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E694814" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40892" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42462"/>
          <exon e_start="43123" e_stop="43138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAA-TTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGATGCATCATGAAGTACTTCTTTCAATGTTAAAACGAACACTATTATTCATTAGTTAGATTGTCCAAGTGGCTTAAAGCGGAATGTGGGGAGGGGAGGATTTCATCTAAAAGCTTACCATATTGAATGTTTACGTCAAATAAATAGATGCATAATCATAGGAGTAACGATATGACATAATCATAATTCCTAACTCAACTAGGAAATATACAATAGGAGTAACTAGTTATATGATCAATTAACATTTATCATAAGTTGGTTGATTTTGACAGGGTTGAAGTCAAAACATTTACTAAGAGAATTTAATATATAAATAATTGAATACACAAATAAGTTAAGAAAACTTAAACATATACTAATATATACATATAATAGAAGTATTATTCAACGAGAGAAAGGATGACAATTGACTCTTCTTAAACAAGAATAGCTCAACGAGAGAAAGGATGACAATTGACTCTTCTTAAACAAGAATAGCTATGTGCTGATGCAGGTTCTACTATACGTTTTAATGCTCCAATTTTTTTCGTTATACTTCACGCCAAACATCTCCCTTTTTTTCAATCAAACAATTAATATAAGGTAAATATTTATTTTGTACTCATATTTGACATTTACACCTAAGTAAAATTAAATAAATAATTTTGACTAGTATTAACAGGCAAAAA</genome_strand>
        <mrna_strand>AAATGCATCTAGAGCTTGGATTTTTGGTGTCCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAACCAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTTCATAGTTCTTGTTCCAATACAATGATCTATAGCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696601" ref_strand="+" ref_description="SGN-E696601 [LH_Ea09I23](-)">
      <seq>agcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctttggccctgttttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttattggagccaccgatccacagaaatttgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactttgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccccaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcatagttcttgttccaatacaaaggtctatagcaataattggtggggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41107" stop="42784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41407" g_stop="41453" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="215" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42110" g_stop="42474" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="694" r_length="366" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="713"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696601" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41407" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAA-TTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGAT</genome_strand>
        <mrna_strand>AGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTTTGGCCCTGTTTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATTGGAGCCACCGATCCACAGAAATTTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTTTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCCCAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTTCATAGTTCTTGTTCCAATACAAAGGTCTATAGCAATAATTGGTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692761" ref_strand="+" ref_description="SGN-E692761 [LH_Ea09I23]">
      <seq>tgcgcacctttatcgccatcaagccagatggagtacagagaggcctgatatcagaaatcgtatcacgctttgagcgcaagggattcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagagaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcatagttcttgttccaatacaatgatctatagcaataattggtggggatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41108" stop="42784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41407" g_stop="41453" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="215" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42110" g_stop="42474" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="694" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="710"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692761" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41407" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAA-TTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGAT</genome_strand>
        <mrna_strand>TGCGCACCTTTATCGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATATCAGAAATCGTATCACGCTTTGAGCGCAAGGGATTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGAGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTTCATAGTTCTTGTTCCAATACAATGATCTATAGCAATAATTGGTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552800" ref_strand="+" ref_description="SGN-E552800 [cTSB-5-B15]">
      <seq>attgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattattcttgttccaatacaatgatctatagcaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41118" stop="42763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41418" g_stop="41453" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="204" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="317" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42110" g_stop="42462" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="670" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="680"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E552800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41418" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACA</genome_strand>
        <mrna_strand>ATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295663" ref_strand="+" ref_description="SGN-E295663 [cLET-25-F13]">
      <seq>tgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41365" stop="42286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41665" g_stop="41809" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41901" g_stop="41986" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="231" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E295663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41665" e_stop="41809"/>
          <exon e_start="41901" e_stop="41986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAG</genome_strand>
        <mrna_strand>TGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377462" ref_strand="+" ref_description="SGN-E377462 [TUS-20-D7](-)">
      <seq>ggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattattcttgttccaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41386" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41686" g_stop="41809" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="237" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42110" g_stop="42456" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="584" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E377462" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41686" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATA</genome_strand>
        <mrna_strand>GGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354165" ref_strand="+" ref_description="SGN-E354165 [cTOS-16-C1]">
      <seq>aagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttgggtaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41429" stop="42544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41729" g_stop="41809" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="194" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42110" g_stop="42244" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="329" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E354165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41729" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACT</genome_strand>
        <mrna_strand>AAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGGTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692510" ref_strand="+" ref_description="SGN-E692510 [LH_Ea08O12]">
      <seq>cgttcgacttccttagctctggccctgtcttagcaatggttcgtgaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaatttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41473" stop="42730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41772" g_stop="41809" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="151" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42110" g_stop="42426" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="468" r_length="317" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="481"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692510" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41772" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTC</genome_strand>
        <mrna_strand>CGTTCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTCGTGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696350" ref_strand="+" ref_description="SGN-E696350 [LH_Ea08O12](-)">
      <seq>gcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtcggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaagtacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctaaggcgagtagcaattttacatttagtatactgtttaaaatcaccacaataatatgtatttgaaacaataaaggtcatttatgtattgaaacattgaatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41475" stop="131037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41775" g_stop="41809" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="148" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42110" g_stop="42444" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="483" r_length="335" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696350" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41775" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATA</genome_strand>
        <mrna_strand>GCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTCGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAAGTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTAAGGCGAGTAGCAATTTTACATTTAGTATACTGTTTAAAATCACCACAATAATATGTATTTGAAACAATAAAGGTCATTTATGTATTGAAACATTGAATTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309302" ref_strand="+" ref_description="SGN-E309302 [cLEY-22-B22]">
      <seq>tgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattattcttgttccaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41618" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41918" g_stop="42013" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42110" g_stop="42446" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="433" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="478"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E309302" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41918" e_stop="42013"/>
          <exon e_start="42110" e_stop="42446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACA</genome_strand>
        <mrna_strand>TGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349069" ref_strand="+" ref_description="SGN-E349069 [cTOS-2-G12]">
      <seq>agatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattattcttgttccaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41625" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41925" g_stop="42013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42110" g_stop="42452" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="432" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E349069" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41925" e_stop="42013"/>
          <exon e_start="42110" e_stop="42452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATC</genome_strand>
        <mrna_strand>AGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354197" ref_strand="+" ref_description="SGN-E354197 [cTOS-16-M3]">
      <seq>agatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattattcttgttccaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41625" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41925" g_stop="42013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42110" g_stop="42452" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="432" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E354197" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41925" e_stop="42013"/>
          <exon e_start="42110" e_stop="42452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATC</genome_strand>
        <mrna_strand>AGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283083" ref_strand="-" ref_description="SGN-E283083 [cLER-17-P10]">
      <seq>gcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcattaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41689" stop="42730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41989" g_stop="42013" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42110" g_stop="42429" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="345" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="369"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E283083" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283083" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41989" e_stop="42013"/>
          <exon e_start="42110" e_stop="42429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATT</genome_strand>
        <mrna_strand>GCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281866" ref_strand="+" ref_description="SGN-E281866 [cLES-2-K12]">
      <seq>taggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaactccatttatgtattgaaacattgaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="41808" stop="42727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42007" g_stop="42013" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42110" g_stop="42426" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="324" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="334"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E281866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42007" e_stop="42013"/>
          <exon e_start="42110" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTC</genome_strand>
        <mrna_strand>TAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270410" ref_strand="+" ref_description="SGN-E270410 [cLEM-1-E23]">
      <seq>aggcccttttgttcttctccatcttcttagcctccctcttaaaaattcttgaaaattctttcagcccaattaagtaaaaggcaaaaaggtgcaaattttcattattattttttatataaccgtgtttttttttttttttttatatcatatcatacacctataaaagcttggacttaggagtctttgtttcaaacttgacaataacaaaaaaaaaatcagatttttttcttgatttttggaattctttttcaccaaaactcaaatcttgttatataaaattaagggttagtttcttttttaattgttttatagtacaatatgtcgaagagtatacttgtgacagggggagcagggtatattgggagtcacacagtgttgcaattgttgcttggtggttataagactgtggtgattgataatttggataattcttctgaaattgctgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="49401" stop="50450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49700" g_stop="50150" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E270410" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49700" e_stop="50150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAAAA</genome_strand>
        <mrna_strand>AGGCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697900" ref_strand="+" ref_description="SGN-E697900 [FA04CE10]">
      <seq>gatttttggaattctttttcaccttaactccaatcttgttatataaaattaagggttagtttcttttttaattgttttatagtacaatatgtcgaagagtatacttgtgacagggggagcagggtatattgggagtcacacagtgttgcaattgttgcttggtggttataagactgtggtgattgataatttggataattcttctgaaattgctgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="49630" stop="50448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49930" g_stop="50148" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E697900" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49930" e_stop="50148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAA</genome_strand>
        <mrna_strand>GATTTTTGGAATTCTTTTTCACCTTAACTCCAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708995" ref_strand="+" ref_description="SGN-E708995 [FA42BE03]">
      <seq>ccattgaggagattttcaggtctaacaaatttgatgctgttattcattttgctggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaagatccgcgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaaccaaggatggtacaggggtccgtgattacattcatgttatacatttaacagacggacacattgctgccttgcagaaactatctgatccttccatacgctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgacaaggcttctggaaagaaaattccaatggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51276" stop="53295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51576" g_stop="51603" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51994" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="164" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="266" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52511" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="494" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="573" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="656" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E708995" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51576" e_stop="51603"/>
          <exon e_start="51859" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGAGGAGATTTTCAGGTCTAACAAGTAAGTTCCAACAAAAAAATCTGTCTTGATTGTTTTCAGGAGACAATTTTTTTCTTCTAATTATCTCAGTATTGAATATAATATAGTTATATTATACACGCTGATGATGGTTTATTGACCGTGTGGTGCATGAATTAAAACTAAGCTTTGAAGAATAGTTGATGAATGCCTGAATCTAGCTTATTGATTCCTTTGCTCAAAATTTATTACCTTTTCGATAAATCGGTTTGGCATCAATTACTTTTTTTTGTGCAGATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG</genome_strand>
        <mrna_strand>CCATTGAGGAGATTTTCAGGTCTAACAA...............................................................................................................................................................................................................................................................ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACCAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATACATTTAACAGACGGACACATTGCTGCCTTGCAGAAACTATCTGATCCTTCCATAC.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGACAAGGCTTCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697365" ref_strand="+" ref_description="SGN-E697365 [FA02CC03]">
      <seq>caggtctaacaaatttgatgctgttatcccttttgatggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggcccaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51556" stop="52647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51592" g_stop="51603" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51994" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="148" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="250" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52347" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="314" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E697365" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51592" e_stop="51603"/>
          <exon e_start="51859" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTCTAACAAGTAAGTTCCAACAAAAAAATCTGTCTTGATTGTTTTCAGGAGACAATTTTTTTCTTCTAATTATCTCAGTATTGAATATAATATAGTTATATTATACACGCTGATGATGGTTTATTGACCGTGTGGTGCATGAATTAAAACTAAGCTTTGAAGAATAGTTGATGAATGCCTGAATCTAGCTTATTGATTCCTTTGCTCAAAATTTATTACCTTTTCGATAAATCGGTTTGGCATCAATTACTTTTTTTTGTGCAGATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGC</genome_strand>
        <mrna_strand>CAGGTCTAACAA...............................................................................................................................................................................................................................................................ATTTGATGCTGTTATCCCTTTTGATGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGCCCAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243306" ref_strand="+" ref_description="SGN-E243306 [cLEF-12-H9]">
      <seq>aacaaatttgatgctgttattcattttgctggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51556" stop="52698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51599" g_stop="51603" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51994" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="141" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="243" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52398" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="358" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E243306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51599" e_stop="51603"/>
          <exon e_start="51859" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTAAGTTCCAACAAAAAAATCTGTCTTGATTGTTTTCAGGAGACAATTTTTTTCTTCTAATTATCTCAGTATTGAATATAATATAGTTATATTATACACGCTGATGATGGTTTATTGACCGTGTGGTGCATGAATTAAAACTAAGCTTTGAAGAATAGTTGATGAATGCCTGAATCTAGCTTATTGATTCCTTTGCTCAAAATTTATTACCTTTTCGATAAATCGGTTTGGCATCAATTACTTTTTTTTGTGCAGATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAG</genome_strand>
        <mrna_strand>AACAA...............................................................................................................................................................................................................................................................ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228499" ref_strand="+" ref_description="SGN-E228499 [cLED-3-N7]">
      <seq>tttgatgctgttattcattttgctggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaagatccgcgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagctatctgatccttccatangctgtgaagtgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51560" stop="53105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51860" g_stop="51994" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="237" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52284" g_stop="52511" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="465" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="544" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52907" g_stop="52921" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="559" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E228499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51860" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACA</genome_strand>
        <mrna_strand>TTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAN.................................................................................................................GCTGTGAAGTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263620" ref_strand="+" ref_description="SGN-E263620 [cLEG-60-J2]">
      <seq>tggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaagatccgcgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagctatctgatccttccataggctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgagaaggcttctggaaagaaaattccaatggttatgtctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaagcgaaatatggcatcgaagagatgtgtanggatcagtggaactgggctaagaagaatccctatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51583" stop="53978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51883" g_stop="51994" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="214" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52284" g_stop="52511" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="442" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="604" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53395" g_stop="53486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="696" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53610" g_stop="53678" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="765" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E263620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51883" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
          <exon e_start="53395" e_stop="53486"/>
          <exon e_start="53610" e_stop="53678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAGGTAGTTTTCAATTGCATTCCTCCTCCATGTATCGTTATAATGTTGCATCCAATTCCTCTCAATGGCAGAGGAAAAAGGAAACCACAATTTCCCTCAAGCCGAGAGCTATTTGTTGTTACTAGTGTTTTCATACTAGTGTTAGCTCTTCTCTTTTTTTGGGGTACCGATGCCCTTGTATACTTTTGACTCACCTAGAATAATTCCGTCTCCCACCAATACAGATACGGTAACTCTGCCTATCAAAGCTAAGACAAGTGCCTATCTCTTTCCCATCTCATTTGTTTTTCGTTTTCTACTTCCTCGTGAATAGACTTTGTTAATTATTGAACCTTTTAGTTGTTTTTAAGACCCTACATGAGTGTTTAGTTTGCATTACTTACCTATTTCTGTACTTTTTACCCCCAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTA</genome_strand>
        <mrna_strand>TGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................AGCGAAATATGGCATCGAAGAGATGTGTANGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710468" ref_strand="+" ref_description="SGN-E710468 [FA55CB02]">
      <seq>ccgtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaagatccgcgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagctatctgatccttccataggctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgagaaggcttctggaaagaaaattccaatggttatgtctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51600" stop="54067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51898" g_stop="51994" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="199" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52284" g_stop="52511" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="427" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="506" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="589" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53395" g_stop="53486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="681" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53610" g_stop="53767" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="839" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E710468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51898" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
          <exon e_start="53395" e_stop="53486"/>
          <exon e_start="53610" e_stop="53767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAGGTAGTTTTCAATTGCATTCCTCCTCCATGTATCGTTATAATGTTGCATCCAATTCCTCTCAATGGCAGAGGAAAAAGGAAACCACAATTTCCCTCAAGCCGAGAGCTATTTGTTGTTACTAGTGTTTTCATACTAGTGTTAGCTCTTCTCTTTTTTTGGGGTACCGATGCCCTTGTATACTTTTGACTCACCTAGAATAATTCCGTCTCCCACCAATACAGATACGGTAACTCTGCCTATCAAAGCTAAGACAAGTGCCTATCTCTTTCCCATCTCATTTGTTTTTCGTTTTCTACTTCCTCGTGAATAGACTTTGTTAATTATTGAACCTTTTAGTTGTTTTTAAGACCCTACATGAGTGTTTAGTTTGCATTACTTACCTATTTCTGTACTTTTTACCCCCAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCA</genome_strand>
        <mrna_strand>CCGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692986" ref_strand="+" ref_description="SGN-E692986 [LH_Ea10C08]">
      <seq>cacgattggtgaagatccacgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagttatctgatccttccataggctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgagaaggcttctggaaagaaaattccaatggttatgtctggtcgacgccctggtgatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcaaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaacccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatttagtcgatacgttcctgttgctgcatcgtgttagtcttcgaagggacgattcagcgtatagttgtagggctattagatgggattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagtcagtagtttagattataaaagggaaaatctaagaaagttgatgaataatatagcctttacaatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="52084" stop="54230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52385" g_stop="52511" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="206" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="289" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53395" g_stop="53486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="381" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53610" g_stop="53928" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="707" r_length="326" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="735"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692986" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52385" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
          <exon e_start="53395" e_stop="53486"/>
          <exon e_start="53610" e_stop="53928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAGGTAGTTTTCAATTGCATTCCTCCTCCATGTATCGTTATAATGTTGCATCCAATTCCTCTCAATGGCAGAGGAAAAAGGAAACCACAATTTCCCTCAAGCCGAGAGCTATTTGTTGTTACTAGTGTTTTCATACTAGTGTTAGCTCTTCTCTTTTTTTGGGGTACCGATGCCCTTGTATACTTTTGACTCACCTAGAATAATTCCGTCTCCCACCAATACAGATACGGTAACTCTGCCTATCAAAGCTAAGACAAGTGCCTATCTCTTTCCCATCTCATTTGTTTTTCGTTTTCTACTTCCTCGTGAATAGACTTTGTTAATTATTGAACCTTTTAGTTGTTTTTAAGACCCTACATGAGTGTTTAGTTTGCATTACTTACCTATTTCTGTACTTTTTACCCCCAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATC--G-T-G--TTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAG-TTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAAT</genome_strand>
        <mrna_strand>CACGATTGGTGAAGATCCACGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGTTATCTGATCCTTCCATAG.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGTGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCAAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAACCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATTTAGTCGATACGTTCCTGTTGCTGCATCGTGTTAGTCTTCGAAGGGACGATTCAGCGTATAGTTGTAGGGCTATTAGATGGGATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTCAGTAGTTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696826" ref_strand="+" ref_description="SGN-E696826 [LH_Ea10C08](-)">
      <seq>attggtgaagatccacgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagttatctgatccttccataggctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgagaaggcttctggaaagaaaattccaatggttatgtctggtcgacgccctggtgatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcaaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaacccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatttagtcgatacgttcctgttgctgcatcgtgttagtcttcgaagggacgattcagcgtatagttgtagggctattagatgggattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaaggggtcagtagtttagattataaaagggaaaatctttaaaggtgatgaataatatagcctttacaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="52089" stop="54209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52389" g_stop="52511" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="202" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="285" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53395" g_stop="53486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="377" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53610" g_stop="53928" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="702" r_length="325" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="731"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696826" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52389" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
          <exon e_start="53395" e_stop="53486"/>
          <exon e_start="53610" e_stop="53928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAGGTAGTTTTCAATTGCATTCCTCCTCCATGTATCGTTATAATGTTGCATCCAATTCCTCTCAATGGCAGAGGAAAAAGGAAACCACAATTTCCCTCAAGCCGAGAGCTATTTGTTGTTACTAGTGTTTTCATACTAGTGTTAGCTCTTCTCTTTTTTTGGGGTACCGATGCCCTTGTATACTTTTGACTCACCTAGAATAATTCCGTCTCCCACCAATACAGATACGGTAACTCTGCCTATCAAAGCTAAGACAAGTGCCTATCTCTTTCCCATCTCATTTGTTTTTCGTTTTCTACTTCCTCGTGAATAGACTTTGTTAATTATTGAACCTTTTAGTTGTTTTTAAGACCCTACATGAGTGTTTAGTTTGCATTACTTACCTATTTCTGTACTTTTTACCCCCAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATC--G-T-G--TTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAG-TTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAAT</genome_strand>
        <mrna_strand>ATTGGTGAAGATCCACGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGTTATCTGATCCTTCCATAG.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGTGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCAAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAACCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATTTAGTCGATACGTTCCTGTTGCTGCATCGTGTTAGTCTTCGAAGGGACGATTCAGCGTATAGTTGTAGGGCTATTAGATGGGATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAAGGGGTCAGTAGTTTAGATTATAAAAGGGAAAATCT-TTAAAGGTGATGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377585" ref_strand="+" ref_description="SGN-E377585 [TUS-20-N7](-)">
      <seq>gtctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaaaaagaatccctatggctatgaaggaactccagaatttaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatttaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatcgattagtaactaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53112" stop="66735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53412" g_stop="53486" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54074" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="540" r_length="465" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54075" i_stop="56660" i_length="2586">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56661" g_stop="56682" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="562" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E377585" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53412" e_stop="53486"/>
          <exon e_start="53610" e_stop="54074"/>
          <exon e_start="56661" e_stop="56682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAACTCTTGTTTTCTATCGAGCTTTGTTGCATGGACCTGTATAGTATGATTTGCATCTCTAATGTAATAATGTCTTAGTATTTGCTTAAATTTAAATTTGCATCGAAAAGTCAGAATTCTTGTTGGGAACATTGATTGTTGAGGGTGAGTAAAATTAAACAGATTTTAAGTGGTTGTAGTTCACATGTAGTATGTGATTTATCTGTCGGTAGTAGCAGTTACCACATTCGACATATGCCATGTGAATATTCCAACAATTATTTTGTTTTCTTTCAAAGTCTTTTTCGAAAAAATATTTTTAAATAGTCGTAATTTGTGTTTAACTAATTAATTTATATTAAAAAAAAACATTTTTTCCTCCATAAACTTGACTAAAAATGATTTTTCAAAAAACAAACACTTTTGTCGAAAATAATAGATAGAAATACACAAATAAGGTCGTTCTAACACTCATTATAGAGGTAAATAAGTATTTTTTTTTCACTTCTCAAAAAATTGACAAACAAATTATATATCTGATTTTCTTTAGTTTAACAGAATTAAAAAAAAAGTCACGATATATATTAAGATGAATGAAATTCTTCTATTTATAACAAAAAAATTTCAAAATTTAAATTAGTCGGCGTACTAGACAAGAAAAATGGACGGTATTGATCCAAAATTGGTTAAACAAACAAACAAAATAAAGAAAGAGATTGTTAATTACTAACATTAGTCTAATTTTAGCTAAAAGGCAAAGTAGTCCCATAATTTCCATTTTGTTATCTATACATCCTGCCAATTTGCTGACTACTCTTTCTATGTCATGTTTCGTGTTGAATAATTAATGTATTTATTTTATATCAAATTTTTTTAGGATTATTGGATCATTATGAATGTTTCGTAGAGGAATCTTCTTCTTTGCTAAAAAGATGATTTAGTGATTTGACTAAGTTTACAATTACTTTTTTTTTTGTAATGGTAGATAATTTTGCACCGACTTAGTTATTTAAAAGTTATATGTAATTGTTTTTAGCTAACATTTGTAAATGAAAAAGACAATTAACTAATTTGATTTTAACTGGTCAATTTACACTAGACATGTAACGACATTTGCACTACCAACAAATGTCAAAATCGTGTAATGTTGTATATATTTTTAAAAAGAAAAAAAGACCGTTTGATATATTAAATTTTCGGTATGCATGAAAAACGAAAAAATTTCAAACCATAAAAGTCTATATTAAGAGGTCTTCTTCTGCAAAATGTTATTTCCAAAGTTTAAACACGTAACCTTTTCCTAATTACATGCCGATAACTTTATCAATTACTTCAGTGAAATATTTTCAGCCAATTAATTTACAGTTAAATGTCATTACCAAAGTTTATATTGGGCCAAATGGATCACTTGGAAGTTCTGTTTCTATGGGCCCAGATAATCGATCTAATTGGGCCAACAAAGTAACTTCAAGCCTTACACAGTAATGGGCCCATTATTCATATAAAGCCCAAAAAAGAATTAAAAAGTTGAAGTATAATATCTAATTTTCTAAAAAGTATTTAATTTTTAGCCAACGTAGCTAAATTTTAAATTGTAAATAATAGCCTTTGGTCATTTACTATGTATACTTAAATATATGCCAGCTGTAACTATTGATTGTTTGTAGTTATTTGAGTTCAAGCCTTTTATATATAGAAAAAAGATCTTCATATTTCAAATATATATTACTTTGAATATGAATATGAAATAGATAAAAATTAAAATATTCAATAAAGATATTAGAATTCAATGTATGATTATGTCATTTAAATAAAAGATACCACCTTTTGTTATATATGGCTTACATCATTGAAAATTAACGATCGTTAAATCTAATTTCATGCTCAAATGTATAAAGCTCGATATTATCAATTTTACATATTTAAATCTGTAAGTTAAATTTGACAGTCTTAAAAATTTAGTTTTAAAATTCTAGCATTTTGAACAAAAAGTCTTCAAAATTCAAATATACTAATTTAAAATAGATAATGATGAAGCCACAAAAATTCATTAAAGTTATTAGAATTAAAATTTATATCATTATCTCATTCATATTTTGATGAATGAATATATATACCTTATATCATTGAGAAATACGGACCGTCAAATCTGATATCATAGTTAAAGGACTGATATTTGAAATGTCCATTCCAAATATTTAAATTTGAAGTTAAATTTTTTTATAACATTAAATCTTAAACTTCAACTCCGTAGAACTGATTTCGAAAACTCCATACACAAATTTTTAACCTTATCAATTAGAGTATGATCTTTGAATAGAGACTCTGAATCACTCAATCAAATGAGATCATATCTTTCACTTTCTCGTAAGTCATTGATTGACTATTTTTAATTTCACTATTTTAACAATGATATTAATAAAAATTTTGATTTTCTATTATGTTATTATTAATCACCACTCCTATTTCTCCCTATATACCTACCATTTGGAGTAATAATAAATATTTGTATGAGTATTAATTATTCTTTTAATATCAGCCCTCCAAGCTGCTATTTGTGCACATTTACCTCAAGGATGAAGGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>GTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAAAAGAATCCCTATGGCTATGAAGGAACTCCAGAATTTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATTTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235729" ref_strand="+" ref_description="SGN-E235729 [cLED-15-J22]">
      <seq>tctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatcgattagtaactaaaaaaaaaaaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="66735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54075" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="540" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54076" i_stop="56660" i_length="2585">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56661" g_stop="56682" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="562" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E235729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="54075"/>
          <exon e_start="56661" e_stop="56682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAACTCTTGTTTTCTATCGAGCTTTGTTGCATGGACCTGTATAGTATGATTTGCATCTCTAATGTAATAATGTCTTAGTATTTGCTTAAATTTAAATTTGCATCGAAAAGTCAGAATTCTTGTTGGGAACATTGATTGTTGAGGGTGAGTAAAATTAAACAGATTTTAAGTGGTTGTAGTTCACATGTAGTATGTGATTTATCTGTCGGTAGTAGCAGTTACCACATTCGACATATGCCATGTGAATATTCCAACAATTATTTTGTTTTCTTTCAAAGTCTTTTTCGAAAAAATATTTTTAAATAGTCGTAATTTGTGTTTAACTAATTAATTTATATTAAAAAAAAACATTTTTTCCTCCATAAACTTGACTAAAAATGATTTTTCAAAAAACAAACACTTTTGTCGAAAATAATAGATAGAAATACACAAATAAGGTCGTTCTAACACTCATTATAGAGGTAAATAAGTATTTTTTTTTCACTTCTCAAAAAATTGACAAACAAATTATATATCTGATTTTCTTTAGTTTAACAGAATTAAAAAAAAAGTCACGATATATATTAAGATGAATGAAATTCTTCTATTTATAACAAAAAAATTTCAAAATTTAAATTAGTCGGCGTACTAGACAAGAAAAATGGACGGTATTGATCCAAAATTGGTTAAACAAACAAACAAAATAAAGAAAGAGATTGTTAATTACTAACATTAGTCTAATTTTAGCTAAAAGGCAAAGTAGTCCCATAATTTCCATTTTGTTATCTATACATCCTGCCAATTTGCTGACTACTCTTTCTATGTCATGTTTCGTGTTGAATAATTAATGTATTTATTTTATATCAAATTTTTTTAGGATTATTGGATCATTATGAATGTTTCGTAGAGGAATCTTCTTCTTTGCTAAAAAGATGATTTAGTGATTTGACTAAGTTTACAATTACTTTTTTTTTTGTAATGGTAGATAATTTTGCACCGACTTAGTTATTTAAAAGTTATATGTAATTGTTTTTAGCTAACATTTGTAAATGAAAAAGACAATTAACTAATTTGATTTTAACTGGTCAATTTACACTAGACATGTAACGACATTTGCACTACCAACAAATGTCAAAATCGTGTAATGTTGTATATATTTTTAAAAAGAAAAAAAGACCGTTTGATATATTAAATTTTCGGTATGCATGAAAAACGAAAAAATTTCAAACCATAAAAGTCTATATTAAGAGGTCTTCTTCTGCAAAATGTTATTTCCAAAGTTTAAACACGTAACCTTTTCCTAATTACATGCCGATAACTTTATCAATTACTTCAGTGAAATATTTTCAGCCAATTAATTTACAGTTAAATGTCATTACCAAAGTTTATATTGGGCCAAATGGATCACTTGGAAGTTCTGTTTCTATGGGCCCAGATAATCGATCTAATTGGGCCAACAAAGTAACTTCAAGCCTTACACAGTAATGGGCCCATTATTCATATAAAGCCCAAAAAAGAATTAAAAAGTTGAAGTATAATATCTAATTTTCTAAAAAGTATTTAATTTTTAGCCAACGTAGCTAAATTTTAAATTGTAAATAATAGCCTTTGGTCATTTACTATGTATACTTAAATATATGCCAGCTGTAACTATTGATTGTTTGTAGTTATTTGAGTTCAAGCCTTTTATATATAGAAAAAAGATCTTCATATTTCAAATATATATTACTTTGAATATGAATATGAAATAGATAAAAATTAAAATATTCAATAAAGATATTAGAATTCAATGTATGATTATGTCATTTAAATAAAAGATACCACCTTTTGTTATATATGGCTTACATCATTGAAAATTAACGATCGTTAAATCTAATTTCATGCTCAAATGTATAAAGCTCGATATTATCAATTTTACATATTTAAATCTGTAAGTTAAATTTGACAGTCTTAAAAATTTAGTTTTAAAATTCTAGCATTTTGAACAAAAAGTCTTCAAAATTCAAATATACTAATTTAAAATAGATAATGATGAAGCCACAAAAATTCATTAAAGTTATTAGAATTAAAATTTATATCATTATCTCATTCATATTTTGATGAATGAATATATATACCTTATATCATTGAGAAATACGGACCGTCAAATCTGATATCATAGTTAAAGGACTGATATTTGAAATGTCCATTCCAAATATTTAAATTTGAAGTTAAATTTTTTTATAACATTAAATCTTAAACTTCAACTCCGTAGAACTGATTTCGAAAACTCCATACACAAATTTTTAACCTTATCAATTAGAGTATGATCTTTGAATAGAGACTCTGAATCACTCAATCAAATGAGATCATATCTTTCACTTTCTCGTAAGTCATTGATTGACTATTTTTAATTTCACTATTTTAACAATGATATTAATAAAAATTTTGATTTTCTATTATGTTATTATTAATCACCACTCCTATTTCTCCCTATATACCTACCATTTGGAGTAATAATAAATATTTGTATGAGTATTAATTATTCTTTTAATATCAGCCCTCCAAGCTGCTATTTGTGCACATTTACCTCAAGGATGAAGGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAANAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377586" ref_strand="+" ref_description="SGN-E377586 [TUS-20-N7]">
      <seq>tctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatcgattagtaactaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="66735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54075" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="540" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54076" i_stop="56660" i_length="2585">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56661" g_stop="56682" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="562" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E377586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="54075"/>
          <exon e_start="56661" e_stop="56682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAACTCTTGTTTTCTATCGAGCTTTGTTGCATGGACCTGTATAGTATGATTTGCATCTCTAATGTAATAATGTCTTAGTATTTGCTTAAATTTAAATTTGCATCGAAAAGTCAGAATTCTTGTTGGGAACATTGATTGTTGAGGGTGAGTAAAATTAAACAGATTTTAAGTGGTTGTAGTTCACATGTAGTATGTGATTTATCTGTCGGTAGTAGCAGTTACCACATTCGACATATGCCATGTGAATATTCCAACAATTATTTTGTTTTCTTTCAAAGTCTTTTTCGAAAAAATATTTTTAAATAGTCGTAATTTGTGTTTAACTAATTAATTTATATTAAAAAAAAACATTTTTTCCTCCATAAACTTGACTAAAAATGATTTTTCAAAAAACAAACACTTTTGTCGAAAATAATAGATAGAAATACACAAATAAGGTCGTTCTAACACTCATTATAGAGGTAAATAAGTATTTTTTTTTCACTTCTCAAAAAATTGACAAACAAATTATATATCTGATTTTCTTTAGTTTAACAGAATTAAAAAAAAAGTCACGATATATATTAAGATGAATGAAATTCTTCTATTTATAACAAAAAAATTTCAAAATTTAAATTAGTCGGCGTACTAGACAAGAAAAATGGACGGTATTGATCCAAAATTGGTTAAACAAACAAACAAAATAAAGAAAGAGATTGTTAATTACTAACATTAGTCTAATTTTAGCTAAAAGGCAAAGTAGTCCCATAATTTCCATTTTGTTATCTATACATCCTGCCAATTTGCTGACTACTCTTTCTATGTCATGTTTCGTGTTGAATAATTAATGTATTTATTTTATATCAAATTTTTTTAGGATTATTGGATCATTATGAATGTTTCGTAGAGGAATCTTCTTCTTTGCTAAAAAGATGATTTAGTGATTTGACTAAGTTTACAATTACTTTTTTTTTTGTAATGGTAGATAATTTTGCACCGACTTAGTTATTTAAAAGTTATATGTAATTGTTTTTAGCTAACATTTGTAAATGAAAAAGACAATTAACTAATTTGATTTTAACTGGTCAATTTACACTAGACATGTAACGACATTTGCACTACCAACAAATGTCAAAATCGTGTAATGTTGTATATATTTTTAAAAAGAAAAAAAGACCGTTTGATATATTAAATTTTCGGTATGCATGAAAAACGAAAAAATTTCAAACCATAAAAGTCTATATTAAGAGGTCTTCTTCTGCAAAATGTTATTTCCAAAGTTTAAACACGTAACCTTTTCCTAATTACATGCCGATAACTTTATCAATTACTTCAGTGAAATATTTTCAGCCAATTAATTTACAGTTAAATGTCATTACCAAAGTTTATATTGGGCCAAATGGATCACTTGGAAGTTCTGTTTCTATGGGCCCAGATAATCGATCTAATTGGGCCAACAAAGTAACTTCAAGCCTTACACAGTAATGGGCCCATTATTCATATAAAGCCCAAAAAAGAATTAAAAAGTTGAAGTATAATATCTAATTTTCTAAAAAGTATTTAATTTTTAGCCAACGTAGCTAAATTTTAAATTGTAAATAATAGCCTTTGGTCATTTACTATGTATACTTAAATATATGCCAGCTGTAACTATTGATTGTTTGTAGTTATTTGAGTTCAAGCCTTTTATATATAGAAAAAAGATCTTCATATTTCAAATATATATTACTTTGAATATGAATATGAAATAGATAAAAATTAAAATATTCAATAAAGATATTAGAATTCAATGTATGATTATGTCATTTAAATAAAAGATACCACCTTTTGTTATATATGGCTTACATCATTGAAAATTAACGATCGTTAAATCTAATTTCATGCTCAAATGTATAAAGCTCGATATTATCAATTTTACATATTTAAATCTGTAAGTTAAATTTGACAGTCTTAAAAATTTAGTTTTAAAATTCTAGCATTTTGAACAAAAAGTCTTCAAAATTCAAATATACTAATTTAAAATAGATAATGATGAAGCCACAAAAATTCATTAAAGTTATTAGAATTAAAATTTATATCATTATCTCATTCATATTTTGATGAATGAATATATATACCTTATATCATTGAGAAATACGGACCGTCAAATCTGATATCATAGTTAAAGGACTGATATTTGAAATGTCCATTCCAAATATTTAAATTTGAAGTTAAATTTTTTTATAACATTAAATCTTAAACTTCAACTCCGTAGAACTGATTTCGAAAACTCCATACACAAATTTTTAACCTTATCAATTAGAGTATGATCTTTGAATAGAGACTCTGAATCACTCAATCAAATGAGATCATATCTTTCACTTTCTCGTAAGTCATTGATTGACTATTTTTAATTTCACTATTTTAACAATGATATTAATAAAAATTTTGATTTTCTATTATGTTATTATTAATCACCACTCCTATTTCTCCCTATATACCTACCATTTGGAGTAATAATAAATATTTGTATGAGTATTAATTATTCTTTTAATATCAGCCCTCCAAGCTGCTATTTGTGCACATTTACCTCAAGGATGAAGGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237926" ref_strand="+" ref_description="SGN-E237926 [cLED-18-O15]">
      <seq>tctggtcgactccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatcgattagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54070" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="535" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E237926" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="54070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTA</genome_strand>
        <mrna_strand>TCTGGTCGACTCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231850" ref_strand="+" ref_description="SGN-E231850 [cLED-7-G14]">
      <seq>tctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54062" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="527" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E231850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="54062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATC</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242076" ref_strand="+" ref_description="SGN-E242076 [cLED-27-N18]">
      <seq>tctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcaccatcatcattgatttcaactagtttgggattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54054" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="520" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E242076" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="54054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCA-CATCATCATTGATTTCAACTAGTTTGAGATTGAG</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACCATCATCATTGATTTCAACTAGTTTGGGATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244738" ref_strand="+" ref_description="SGN-E244738 [cLED-38-H3]">
      <seq>tctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattcctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="53974" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="439" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E244738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="53974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTT</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236308" ref_strand="+" ref_description="SGN-E236308 [cLED-20-H13]">
      <seq>tctgttcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattggctaacttatataagtttcagaatgtaattggagtttcaatgaagtagtagttagattatttaaaaggaaaatcctaagaaagttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="53923" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="390" r_length="316" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E236308" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="53923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTA-TAAAAGGGAAAAT-CTAAGAAAGTTGATGA</genome_strand>
        <mrna_strand>TCTGTTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGGCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAAGTAGTAGTTAGATTATTTAAAAGGAAAATCCTAAGAAAGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236258" ref_strand="+" ref_description="SGN-E236258 [cLED-20-C21]">
      <seq>tctggtcgacgccctggttatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagcttcagaatgtaattggagtttcaatgagttagtagttagattataaacgggaaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53113" stop="54210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53413" g_stop="53486" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="53910" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="375" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E236258" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53413" e_stop="53486"/>
          <exon e_start="53610" e_stop="53910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTA</genome_strand>
        <mrna_strand>TCTGGTCGACGCCCTGGTTATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGCTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAACGGGAAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376786" ref_strand="+" ref_description="SGN-E376786 [TUS-19-M8](-)">
      <seq>acgccctggagatgcgaaaattgtatatgctgatattgagaaagcagaacgcaaattgaagtgaaaggcgaaatatggcatcgaaaagatgtgtagggatcagtggaactgggctaaaaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaaggaacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcaaaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatttaaaaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatttcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaattgattagtaattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="53121" stop="54375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53421" g_stop="53486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53610" g_stop="54056" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="513" r_length="447" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="553"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E376786" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53421" e_stop="53486"/>
          <exon e_start="53610" e_stop="54056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGAC</genome_strand>
        <mrna_strand>ACGCCCTGGAGATGCGAAAATTGTATATGCTGATATTGAGAAAGCAGAACGCAAATTGAAGTGAAA...........................................................................................................................GGCGAAATATGGCATCGAAAAGATGTGTAGGGATCAGTGGAACTGGGCTAAAAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGAACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAAAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATTTAAAAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATTTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704508" ref_strand="+" ref_description="SGN-E704508 [FA24CA02]">
      <seq>ggaagagaaaagaatattcccacaaaagaaagaagaaaaaataaaaaaaataataaaggggaacttcaatttagcatatttgtagagacaaaaaaccatcaattgttgtaaaaaatcgaaaacaacagttgagacaacatcgtcccacctccttctccaggcccagctgaactttttggaaggtgggttcttgaaaatcttagaaaatggctaccagcaatgacattgttgcagctacaaagggtcaagaagaactaagtgtattaatctcagagagggaaattttcgaccaatgtggacctgtgcacctaactgctattgactgggaaaatgttgctcatcaacgatctgtggctgccagtttggttcagggcgtctacatcctagagcgtgacaagcaagaaaaacggaagggaagtcaagctcttgctcctccatggtggagacatttccaatttgagttatatcgtgtgctcattgatgatgttgattcctgcatttttggtgctatatataaatttgcaccctcaaaatcttattttggcggttccaaagataaaagccaacgatttgtcattgctttccgtgggaccttaaccaaaggtgatgcattttctcgagatatacaattggatatccacatactcaggaatggacttcatcagacttctcgctttgagacagccattcaagctgttcgacatgtggttgcaacatttggaagttcaagtatctggctaactggtcattccttaggggctgcaatggcaatgcttgctggcaaaaccatggcaaagactggtgtatttttagatgcatttttgtttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56333" stop="60865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56633" g_stop="56874" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58643" g_stop="58725" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="325" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60060" g_stop="60565" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="831" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E704508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56633" e_stop="56874"/>
          <exon e_start="58643" e_stop="58725"/>
          <exon e_start="60060" e_stop="60565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAGGTTGGATCTTGAATAACCCCAATGGCATTTAGACTAAAAAATCAATCTTTTTGATGTTTCTGTCATTTTTCCCTTAAAAAGTTGCATTTTTTTTGTAAACCTAGCATGTTTGTTTCAAAGATTGTATCTTTTTTGTAATGTTTGTGGTATTTTTGTTCTCTGTTTTTCATTGATCCAACTTGCTGGAAAAAGGGTATTTTGTATTTCTATACCTTGACAAGTGTCTGAGCAAATGCTACTAAGTAGATGATCCATGGTAGATGTTTCATTTCACTATTCAGAGTTATATTTGTAAGCAAATGTTACTATTTGGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACTTAATATGGTAAACCCCACCACCAGAATCGTTGCATTCAGGTTCCTTGAGTAGCTATTTTGTACTTTACTAGGTGTTTATGGTTTGAGATAGAGGGTCCTTAACATTAGGCTAACCCCTTGTCAATTGGTATATATATGTTTATTTAGACTATTTAGAGTTATTGTTTGTGATCTATGCATTAGATAATGGTTTGAAGGTTGAGGATTGGGGTAGAAGGTTTGTAGGTAGCGAGTGGTGTAGCACCTTTAAGGGGGAGAGTCAAGAGGTTAGTCTCCTCTGCTACTTTTCTCTTTTTTAGTAGTATTACAATTTAGTAAACGAGTAGTCTTCTTTTAGTTTTTTGTTTTATTTTTACTTGTTGCTTCATTGATTGTGTCCATCTCGCCTCTTTGCTATATTTACTTTTTCTAGCCTATTTGATATTGCTATTTTGTTGTCATATTATTCTTGCAATTATGTTTCGATAATTGTTTTTCTAAGCTGATGGTCATTGGAAATAGCCTCTCTACCTCTAAGGTAGGGGTAACGTCTGCGTACATCATACCCTCCCTAGACCTACTTGTGGGATTACTTTGCATATGTTGTTGTTGTTGATTGCAATGCCCCTCCAAGAAAAATATTTGATTAGGGTAGTAAATGGTAACTCTGAATCTCTGAGAATCATGTGAAATGGGAATTAACTTTGATGACCGTCTTCTAATCTAGCTATTGGCTCAAGTTCATACAGTGGTGCATCGTTATACGTAATATAGTTTGTACCAAATAATGAAGTTGGTGAACTTCATTTAGCAGCTCACTTCTTGCTTAGTGGCACTTTTGATGGCAAGGTTAAACAAGTGTTTATGGATGCATAGCAAAACAGAAGAATGCTGAAGAAACTAGAATCTGAACCCCCAGGAGATATACTCAAATATGAATGTGAAGTTAGGTATACTTATAATTTTCTTTATAAACCAATAAGAGTGCTATAAGAGGGGATATGCGGGATTTTTGTCTAGGGACACGACTATATGAAATGATATCACTGTTATTTGAACCATTCTATTGGGACAAGAACCATTGGTTAGAGCAAAACCAACCCATTAAAGCTGGACAATTCACCCACAAATAAATTTGTGGTTCTCACACTTGGATTGTTGAGGTTTTGACTCTGCGTCGTCCCTTTTGTACAAGTTAGGTAATAGGGTTGGTCTTGCTAGAAGCTTTTTAATATCAATTATTGTGCGTGTGGAGAGTAGGCTGAGATGGGGTATAAGAAATTACTTGACTACTCTTAGCTGGACGACTTGATGACTCGTCAAATTTAGAAATTATTCATGGTGACAACAGTCTACTTAATTTGTTCAGATGGAGTTTCACAACTCTTTTCATGATCGTTACCGTTGTTGTTTCCCCATTGTGTTTTGTGCAGGGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTGGTGTGTAAGTTCTTTTCCATGTTTATTTAGTTAAATAAAGGTTTTGCATATCAGAAAGGTGCTGGAATAAAACGAGATATAATATTGGATAAACTTCTAGTTATATATGGAACACTCTAAGATTACTGGACAAAGATGTAATATATTTAGTATTGAGGAGTTGGGCATATATTGTCAGGAGTTAACAGGATTGTAGTGCTCATGGATTTCAGATCTGCTTGCCATTGTACTAAGTTACAAGTCTTATACTGCCATATCTATTGAGTTCTTGCACATGAAGAAGTCGAAACATCAAGTGTCTTGATCCATACTCACATTACTACCTCCATTCTGGATTGATTCTTGTCTTTTCTTTAATAAATGTCGCAAAGTAAATCCCTTTATAATAATGGATTTCTCTCCCCATTGTACCCTTTTTCAAGTTGTTTGTCTGAACTGAGTAAATCAGGGTATGTCTGTCAAATATAACATCATAATGAGAACCTACACCACTTCCCCTGAATGAAGTATAAGTAGGTTTGGGATGGGGAGAGTGATTTTGCCTTTATACCTTGGATCTACCAAATAAGAGCGCCTCCATGATTTTAGATCACTTTGCTACAGTTGTGTAAGTGCTCTAATATACCTTGTACCCTATCATTTTAGTGGCGGATCCAAGATTTTCACTAAGGGGGTTCGAGAATAAAATGTAGTGGCTGGGATTCGAACTTGAAACCTTAAGGTAAATTTTGAACCTCTTTAAATTACTGGGTCGACCTCTAGTCTAGTATTTAGGAGATTCAAAATCTATGTATGAAAATAAAAAAACAAATACTATATACATACAATGTAACTATTTGTCGAGGGGCCGGAGGGGATTGGTGAACACCCTTTGTTTCCCTAGATCGTCCCTGCCTATCTAAGATGAACATGAGCTTAACACTTACTCCGTGGAATTGGACATAATTTACTTTGGTCGCACTACTATTCCTAAAGAGAGAGAGCCAAATTCTCTTAGACAATTTGGAGATGTCATGCCTGCATTTGCCTAAATTAGCATGATATTGTGCTTAATAGAATGTGTGTTATGCAGGTTCTCTTCTGGAAATAAGTTTCCTTGATCTTTCACCCAATAAACAAAATAGATACAAGAAACAAAGAAATATAGAGGAGCTGACATTAGCTTGAACTATATGCATTCATCATCTTTTCCAAATCATGAAGCTTAATGCTATTGTTTGGCAACACTACTCTCTCTCATGCTGCCCGACACTTACTCTTGCTTGAAATCGGAAGTGTCGAGCCATTTTACAGAAACAGTTGTCATGATAATATTGTTCTTCTACCTAATGCAGGGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATC</genome_strand>
        <mrna_strand>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337390" ref_strand="+" ref_description="SGN-E337390 [cTOE-18-E4]">
      <seq>agaaagaagaaaaaataaaaaaaaataataaaggggaacttcaatttagcatatttgtagagacaaaaaaccatcaattgttgtaaaaaatcgaaaacaacagttgagacaacatcgtcccacctccttctccaggcccagctgaactttttggaaggtgggttcttgaaaatcttagaaaatggctaccagcaatgacattgttgcagctacaaagggtcaagaagaactaagtgtattaatctcagagagggaaattttcgaccaatgtggacctgtgcacctaactgctattgactgggaaagtgttgctcatcaacgatctgtggctgccagtttggttcagggcgtctacatcctagagcgtgacaagcaagaaaaacggaagggaagtcaagctcttgctcctccatggtggagacatttccaatttgagttatatcgtgtgctcattgatgatgttgattcctgcatttttggtatatatataaatttgcaccctcaaaatcttattttggcggttccaaagataaaagccaacgatttgtcattgctttccgtgggaccttaaccaaaagtgatgcattttctcgagatatacaattggatatccacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56359" stop="60679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56659" g_stop="56874" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58643" g_stop="58725" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="300" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60060" g_stop="60379" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="619" r_length="319" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E337390" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56659" e_stop="56874"/>
          <exon e_start="58643" e_stop="58725"/>
          <exon e_start="60060" e_stop="60379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAGAAAAAATA-AAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAGGTTGGATCTTGAATAACCCCAATGGCATTTAGACTAAAAAATCAATCTTTTTGATGTTTCTGTCATTTTTCCCTTAAAAAGTTGCATTTTTTTTGTAAACCTAGCATGTTTGTTTCAAAGATTGTATCTTTTTTGTAATGTTTGTGGTATTTTTGTTCTCTGTTTTTCATTGATCCAACTTGCTGGAAAAAGGGTATTTTGTATTTCTATACCTTGACAAGTGTCTGAGCAAATGCTACTAAGTAGATGATCCATGGTAGATGTTTCATTTCACTATTCAGAGTTATATTTGTAAGCAAATGTTACTATTTGGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACTTAATATGGTAAACCCCACCACCAGAATCGTTGCATTCAGGTTCCTTGAGTAGCTATTTTGTACTTTACTAGGTGTTTATGGTTTGAGATAGAGGGTCCTTAACATTAGGCTAACCCCTTGTCAATTGGTATATATATGTTTATTTAGACTATTTAGAGTTATTGTTTGTGATCTATGCATTAGATAATGGTTTGAAGGTTGAGGATTGGGGTAGAAGGTTTGTAGGTAGCGAGTGGTGTAGCACCTTTAAGGGGGAGAGTCAAGAGGTTAGTCTCCTCTGCTACTTTTCTCTTTTTTAGTAGTATTACAATTTAGTAAACGAGTAGTCTTCTTTTAGTTTTTTGTTTTATTTTTACTTGTTGCTTCATTGATTGTGTCCATCTCGCCTCTTTGCTATATTTACTTTTTCTAGCCTATTTGATATTGCTATTTTGTTGTCATATTATTCTTGCAATTATGTTTCGATAATTGTTTTTCTAAGCTGATGGTCATTGGAAATAGCCTCTCTACCTCTAAGGTAGGGGTAACGTCTGCGTACATCATACCCTCCCTAGACCTACTTGTGGGATTACTTTGCATATGTTGTTGTTGTTGATTGCAATGCCCCTCCAAGAAAAATATTTGATTAGGGTAGTAAATGGTAACTCTGAATCTCTGAGAATCATGTGAAATGGGAATTAACTTTGATGACCGTCTTCTAATCTAGCTATTGGCTCAAGTTCATACAGTGGTGCATCGTTATACGTAATATAGTTTGTACCAAATAATGAAGTTGGTGAACTTCATTTAGCAGCTCACTTCTTGCTTAGTGGCACTTTTGATGGCAAGGTTAAACAAGTGTTTATGGATGCATAGCAAAACAGAAGAATGCTGAAGAAACTAGAATCTGAACCCCCAGGAGATATACTCAAATATGAATGTGAAGTTAGGTATACTTATAATTTTCTTTATAAACCAATAAGAGTGCTATAAGAGGGGATATGCGGGATTTTTGTCTAGGGACACGACTATATGAAATGATATCACTGTTATTTGAACCATTCTATTGGGACAAGAACCATTGGTTAGAGCAAAACCAACCCATTAAAGCTGGACAATTCACCCACAAATAAATTTGTGGTTCTCACACTTGGATTGTTGAGGTTTTGACTCTGCGTCGTCCCTTTTGTACAAGTTAGGTAATAGGGTTGGTCTTGCTAGAAGCTTTTTAATATCAATTATTGTGCGTGTGGAGAGTAGGCTGAGATGGGGTATAAGAAATTACTTGACTACTCTTAGCTGGACGACTTGATGACTCGTCAAATTTAGAAATTATTCATGGTGACAACAGTCTACTTAATTTGTTCAGATGGAGTTTCACAACTCTTTTCATGATCGTTACCGTTGTTGTTTCCCCATTGTGTTTTGTGCAGGGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTGGTGTGTAAGTTCTTTTCCATGTTTATTTAGTTAAATAAAGGTTTTGCATATCAGAAAGGTGCTGGAATAAAACGAGATATAATATTGGATAAACTTCTAGTTATATATGGAACACTCTAAGATTACTGGACAAAGATGTAATATATTTAGTATTGAGGAGTTGGGCATATATTGTCAGGAGTTAACAGGATTGTAGTGCTCATGGATTTCAGATCTGCTTGCCATTGTACTAAGTTACAAGTCTTATACTGCCATATCTATTGAGTTCTTGCACATGAAGAAGTCGAAACATCAAGTGTCTTGATCCATACTCACATTACTACCTCCATTCTGGATTGATTCTTGTCTTTTCTTTAATAAATGTCGCAAAGTAAATCCCTTTATAATAATGGATTTCTCTCCCCATTGTACCCTTTTTCAAGTTGTTTGTCTGAACTGAGTAAATCAGGGTATGTCTGTCAAATATAACATCATAATGAGAACCTACACCACTTCCCCTGAATGAAGTATAAGTAGGTTTGGGATGGGGAGAGTGATTTTGCCTTTATACCTTGGATCTACCAAATAAGAGCGCCTCCATGATTTTAGATCACTTTGCTACAGTTGTGTAAGTGCTCTAATATACCTTGTACCCTATCATTTTAGTGGCGGATCCAAGATTTTCACTAAGGGGGTTCGAGAATAAAATGTAGTGGCTGGGATTCGAACTTGAAACCTTAAGGTAAATTTTGAACCTCTTTAAATTACTGGGTCGACCTCTAGTCTAGTATTTAGGAGATTCAAAATCTATGTATGAAAATAAAAAAACAAATACTATATACATACAATGTAACTATTTGTCGAGGGGCCGGAGGGGATTGGTGAACACCCTTTGTTTCCCTAGATCGTCCCTGCCTATCTAAGATGAACATGAGCTTAACACTTACTCCGTGGAATTGGACATAATTTACTTTGGTCGCACTACTATTCCTAAAGAGAGAGAGCCAAATTCTCTTAGACAATTTGGAGATGTCATGCCTGCATTTGCCTAAATTAGCATGATATTGTGCTTAATAGAATGTGTGTTATGCAGGTTCTCTTCTGGAAATAAGTTTCCTTGATCTTTCACCCAATAAACAAAATAGATACAAGAAACAAAGAAATATAGAGGAGCTGACATTAGCTTGAACTATATGCATTCATCATCTTTTCCAAATCATGAAGCTTAATGCTATTGTTTGGCAACACTACTCTCTCTCATGCTGCCCGACACTTACTCTTGCTTGAAATCGGAAGTGTCGAGCCATTTTACAGAAACAGTTGTCATGATAATATTGTTCTTCTACCTAATGCAGGGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATAC</genome_strand>
        <mrna_strand>AGAAAGAAGAAAAAATAAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGT-ATATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAAGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746263" ref_strand="+" ref_description="SGN-E746263 [GI|47104791]">
      <seq>agacatcatcgtcccacctccttctccaggcccagctgaactttttggaaggtgggttcttgaaaatcttagaaaatggctaccagcaatgacattgttgcagctacaaagggtcaagaagaactaaatgtattaatctcagagagggaaattttcgaccaatgtggacctgtgcacctaactgctattgactgggaaaatgttgctcatcaacgatctgtggctgccagtttggttcagggcgtctacatcctagagcgtgacaagcaagaaaaacggaagggaagtcaagctcttgctcctccatggtggagacatttccaatttgagttatatcgtgtgcttattgatgatgttgattcctgcatttttggtgctatatataaatttgcaccctcaaaatcttattttggcggttccaaagataaaatccaacgatttgttattgctttccgtgggaccttaaccaaaggtgatgcattttctcgagatatacaattggatatccacatactcaggaatggacttcatcagacttctcgctttgagacagccattcaagctgttcgacatgtggttgcaacatttggaagttcaagtatctggctaactggtcattccttaggggctgcaatggcaatgcttgctggcaaaaccatggcaaagactggtgtatttttagatgcatttttgtttaatccgccattcttgtcggccccaattgaaagaattaaagatcaaaaagtgaaacacgggatcagatttgcaactagtgttataacagctggacttgcttttgctgccaagcataaaaacgtgaataatcaatctggagatacatttgttgcattatctgcatggacaccatgcctatatgtgaatccatcggatcctatttgcgcagaatacattggctattttgaacaccgggaaaagatggatacaatgggagcaggagttatcgagaagttagcaacccaacactcacttggtggtcttgtcttgaatttcatggggaaggagtgtgatgagccattgcacctaattccatcagccaatttaacagtaaatttgactcctccgtcagacttcaaaggagctcatggaattcaccaatggtggaaacctgatttacttgtagagtccaagaaacaccagtttacatgaatgatgatataaaacgaagaccactacaccaataaatggtatgtttgtctattttgtatccctggtcgggtatatttatagttatcaacacattacattttgctcttagcttaatagttgtgccttctactggtgctaaagtttctttacagatgcattgtcatctcttgttacctttgattcgttcatgtttctatgttttggtgaatctatctatcagttctgtgcctcatcctattacctattgttgagtgttacgaattgaaattgtgcatatactactcattgtattattgataatatttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56464" stop="61659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56764" g_stop="56874" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58643" g_stop="58725" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="194" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60060" g_stop="61359" g_length="1300"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="1483" r_length="1289" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1484" polyA_stop="1495"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E746263" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1494</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56764" e_stop="56874"/>
          <exon e_start="58643" e_stop="58725"/>
          <exon e_start="60060" e_stop="61359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAGGTTGGATCTTGAATAACCCCAATGGCATTTAGACTAAAAAATCAATCTTTTTGATGTTTCTGTCATTTTTCCCTTAAAAAGTTGCATTTTTTTTGTAAACCTAGCATGTTTGTTTCAAAGATTGTATCTTTTTTGTAATGTTTGTGGTATTTTTGTTCTCTGTTTTTCATTGATCCAACTTGCTGGAAAAAGGGTATTTTGTATTTCTATACCTTGACAAGTGTCTGAGCAAATGCTACTAAGTAGATGATCCATGGTAGATGTTTCATTTCACTATTCAGAGTTATATTTGTAAGCAAATGTTACTATTTGGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACTTAATATGGTAAACCCCACCACCAGAATCGTTGCATTCAGGTTCCTTGAGTAGCTATTTTGTACTTTACTAGGTGTTTATGGTTTGAGATAGAGGGTCCTTAACATTAGGCTAACCCCTTGTCAATTGGTATATATATGTTTATTTAGACTATTTAGAGTTATTGTTTGTGATCTATGCATTAGATAATGGTTTGAAGGTTGAGGATTGGGGTAGAAGGTTTGTAGGTAGCGAGTGGTGTAGCACCTTTAAGGGGGAGAGTCAAGAGGTTAGTCTCCTCTGCTACTTTTCTCTTTTTTAGTAGTATTACAATTTAGTAAACGAGTAGTCTTCTTTTAGTTTTTTGTTTTATTTTTACTTGTTGCTTCATTGATTGTGTCCATCTCGCCTCTTTGCTATATTTACTTTTTCTAGCCTATTTGATATTGCTATTTTGTTGTCATATTATTCTTGCAATTATGTTTCGATAATTGTTTTTCTAAGCTGATGGTCATTGGAAATAGCCTCTCTACCTCTAAGGTAGGGGTAACGTCTGCGTACATCATACCCTCCCTAGACCTACTTGTGGGATTACTTTGCATATGTTGTTGTTGTTGATTGCAATGCCCCTCCAAGAAAAATATTTGATTAGGGTAGTAAATGGTAACTCTGAATCTCTGAGAATCATGTGAAATGGGAATTAACTTTGATGACCGTCTTCTAATCTAGCTATTGGCTCAAGTTCATACAGTGGTGCATCGTTATACGTAATATAGTTTGTACCAAATAATGAAGTTGGTGAACTTCATTTAGCAGCTCACTTCTTGCTTAGTGGCACTTTTGATGGCAAGGTTAAACAAGTGTTTATGGATGCATAGCAAAACAGAAGAATGCTGAAGAAACTAGAATCTGAACCCCCAGGAGATATACTCAAATATGAATGTGAAGTTAGGTATACTTATAATTTTCTTTATAAACCAATAAGAGTGCTATAAGAGGGGATATGCGGGATTTTTGTCTAGGGACACGACTATATGAAATGATATCACTGTTATTTGAACCATTCTATTGGGACAAGAACCATTGGTTAGAGCAAAACCAACCCATTAAAGCTGGACAATTCACCCACAAATAAATTTGTGGTTCTCACACTTGGATTGTTGAGGTTTTGACTCTGCGTCGTCCCTTTTGTACAAGTTAGGTAATAGGGTTGGTCTTGCTAGAAGCTTTTTAATATCAATTATTGTGCGTGTGGAGAGTAGGCTGAGATGGGGTATAAGAAATTACTTGACTACTCTTAGCTGGACGACTTGATGACTCGTCAAATTTAGAAATTATTCATGGTGACAACAGTCTACTTAATTTGTTCAGATGGAGTTTCACAACTCTTTTCATGATCGTTACCGTTGTTGTTTCCCCATTGTGTTTTGTGCAGGGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTGGTGTGTAAGTTCTTTTCCATGTTTATTTAGTTAAATAAAGGTTTTGCATATCAGAAAGGTGCTGGAATAAAACGAGATATAATATTGGATAAACTTCTAGTTATATATGGAACACTCTAAGATTACTGGACAAAGATGTAATATATTTAGTATTGAGGAGTTGGGCATATATTGTCAGGAGTTAACAGGATTGTAGTGCTCATGGATTTCAGATCTGCTTGCCATTGTACTAAGTTACAAGTCTTATACTGCCATATCTATTGAGTTCTTGCACATGAAGAAGTCGAAACATCAAGTGTCTTGATCCATACTCACATTACTACCTCCATTCTGGATTGATTCTTGTCTTTTCTTTAATAAATGTCGCAAAGTAAATCCCTTTATAATAATGGATTTCTCTCCCCATTGTACCCTTTTTCAAGTTGTTTGTCTGAACTGAGTAAATCAGGGTATGTCTGTCAAATATAACATCATAATGAGAACCTACACCACTTCCCCTGAATGAAGTATAAGTAGGTTTGGGATGGGGAGAGTGATTTTGCCTTTATACCTTGGATCTACCAAATAAGAGCGCCTCCATGATTTTAGATCACTTTGCTACAGTTGTGTAAGTGCTCTAATATACCTTGTACCCTATCATTTTAGTGGCGGATCCAAGATTTTCACTAAGGGGGTTCGAGAATAAAATGTAGTGGCTGGGATTCGAACTTGAAACCTTAAGGTAAATTTTGAACCTCTTTAAATTACTGGGTCGACCTCTAGTCTAGTATTTAGGAGATTCAAAATCTATGTATGAAAATAAAAAAACAAATACTATATACATACAATGTAACTATTTGTCGAGGGGCCGGAGGGGATTGGTGAACACCCTTTGTTTCCCTAGATCGTCCCTGCCTATCTAAGATGAACATGAGCTTAACACTTACTCCGTGGAATTGGACATAATTTACTTTGGTCGCACTACTATTCCTAAAGAGAGAGAGCCAAATTCTCTTAGACAATTTGGAGATGTCATGCCTGCATTTGCCTAAATTAGCATGATATTGTGCTTAATAGAATGTGTGTTATGCAGGTTCTCTTCTGGAAATAAGTTTCCTTGATCTTTCACCCAATAAACAAAATAGATACAAGAAACAAAGAAATATAGAGGAGCTGACATTAGCTTGAACTATATGCATTCATCATCTTTTCCAAATCATGAAGCTTAATGCTATTGTTTGGCAACACTACTCTCTCTCATGCTGCCCGACACTTACTCTTGCTTGAAATCGGAAGTGTCGAGCCATTTTACAGAAACAGTTGTCATGATAATATTGTTCTTCTACCTAATGCAGGGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTATAGAA</genome_strand>
        <mrna_strand>AGACATCATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAGAAGAACTAAATGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTTATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAATCCAACGATTTGTTATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCAACTAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGTTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGAATTCACCAATGGTGGAAACCTGATTTACTTGTAGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACGAAGACCACTACACCAATAAATGGTATGTTTGTCTATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTTTGCTCTTAGCTTAATAGTTGTGCCTTCTACTGGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTT----T---G----ATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCTATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358795" ref_strand="+" ref_description="SGN-E358795 [cLHT-24-B15]">
      <seq>gacatcatcgtcccacctccttctccaggcccagctgaactttttggaaggtgggttcttgaaaatcttagaaaatggctaccagcaatgacattgttgcagctacaaagggtcaagaagaactaaatgtattaatctcagagagggaaattttcgaccaatgtggacctgtgcacctaactgctattgactgggaaaatgttgctcatcaacgatctgtggctgccagtttggttcagggcgtctacatcctagagcgtgacaagcaagaaaaacggaagggaagtcaagctcttgctcctccatggtggagacatttccaatttgagttatatcgtgtgcttattgatgatgttgattcctgcatttttggtgctatatataaatttgcaccctcaaaatcttattttggcggttccaaagataaaatccaacgatttgttattgctttccgtgggaccttaaccaaaggtgatgcattttctcgagatatacaattggatatccacatactcaggaatggacttcatcagacttctcgctttgagacagccattcaagctgttcgacatgtggttgcaacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56465" stop="60754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56765" g_stop="56874" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58643" g_stop="58725" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="193" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60060" g_stop="60454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="588" r_length="395" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E358795" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56765" e_stop="56874"/>
          <exon e_start="58643" e_stop="58725"/>
          <exon e_start="60060" e_stop="60454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAGGTTGGATCTTGAATAACCCCAATGGCATTTAGACTAAAAAATCAATCTTTTTGATGTTTCTGTCATTTTTCCCTTAAAAAGTTGCATTTTTTTTGTAAACCTAGCATGTTTGTTTCAAAGATTGTATCTTTTTTGTAATGTTTGTGGTATTTTTGTTCTCTGTTTTTCATTGATCCAACTTGCTGGAAAAAGGGTATTTTGTATTTCTATACCTTGACAAGTGTCTGAGCAAATGCTACTAAGTAGATGATCCATGGTAGATGTTTCATTTCACTATTCAGAGTTATATTTGTAAGCAAATGTTACTATTTGGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACTTAATATGGTAAACCCCACCACCAGAATCGTTGCATTCAGGTTCCTTGAGTAGCTATTTTGTACTTTACTAGGTGTTTATGGTTTGAGATAGAGGGTCCTTAACATTAGGCTAACCCCTTGTCAATTGGTATATATATGTTTATTTAGACTATTTAGAGTTATTGTTTGTGATCTATGCATTAGATAATGGTTTGAAGGTTGAGGATTGGGGTAGAAGGTTTGTAGGTAGCGAGTGGTGTAGCACCTTTAAGGGGGAGAGTCAAGAGGTTAGTCTCCTCTGCTACTTTTCTCTTTTTTAGTAGTATTACAATTTAGTAAACGAGTAGTCTTCTTTTAGTTTTTTGTTTTATTTTTACTTGTTGCTTCATTGATTGTGTCCATCTCGCCTCTTTGCTATATTTACTTTTTCTAGCCTATTTGATATTGCTATTTTGTTGTCATATTATTCTTGCAATTATGTTTCGATAATTGTTTTTCTAAGCTGATGGTCATTGGAAATAGCCTCTCTACCTCTAAGGTAGGGGTAACGTCTGCGTACATCATACCCTCCCTAGACCTACTTGTGGGATTACTTTGCATATGTTGTTGTTGTTGATTGCAATGCCCCTCCAAGAAAAATATTTGATTAGGGTAGTAAATGGTAACTCTGAATCTCTGAGAATCATGTGAAATGGGAATTAACTTTGATGACCGTCTTCTAATCTAGCTATTGGCTCAAGTTCATACAGTGGTGCATCGTTATACGTAATATAGTTTGTACCAAATAATGAAGTTGGTGAACTTCATTTAGCAGCTCACTTCTTGCTTAGTGGCACTTTTGATGGCAAGGTTAAACAAGTGTTTATGGATGCATAGCAAAACAGAAGAATGCTGAAGAAACTAGAATCTGAACCCCCAGGAGATATACTCAAATATGAATGTGAAGTTAGGTATACTTATAATTTTCTTTATAAACCAATAAGAGTGCTATAAGAGGGGATATGCGGGATTTTTGTCTAGGGACACGACTATATGAAATGATATCACTGTTATTTGAACCATTCTATTGGGACAAGAACCATTGGTTAGAGCAAAACCAACCCATTAAAGCTGGACAATTCACCCACAAATAAATTTGTGGTTCTCACACTTGGATTGTTGAGGTTTTGACTCTGCGTCGTCCCTTTTGTACAAGTTAGGTAATAGGGTTGGTCTTGCTAGAAGCTTTTTAATATCAATTATTGTGCGTGTGGAGAGTAGGCTGAGATGGGGTATAAGAAATTACTTGACTACTCTTAGCTGGACGACTTGATGACTCGTCAAATTTAGAAATTATTCATGGTGACAACAGTCTACTTAATTTGTTCAGATGGAGTTTCACAACTCTTTTCATGATCGTTACCGTTGTTGTTTCCCCATTGTGTTTTGTGCAGGGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTGGTGTGTAAGTTCTTTTCCATGTTTATTTAGTTAAATAAAGGTTTTGCATATCAGAAAGGTGCTGGAATAAAACGAGATATAATATTGGATAAACTTCTAGTTATATATGGAACACTCTAAGATTACTGGACAAAGATGTAATATATTTAGTATTGAGGAGTTGGGCATATATTGTCAGGAGTTAACAGGATTGTAGTGCTCATGGATTTCAGATCTGCTTGCCATTGTACTAAGTTACAAGTCTTATACTGCCATATCTATTGAGTTCTTGCACATGAAGAAGTCGAAACATCAAGTGTCTTGATCCATACTCACATTACTACCTCCATTCTGGATTGATTCTTGTCTTTTCTTTAATAAATGTCGCAAAGTAAATCCCTTTATAATAATGGATTTCTCTCCCCATTGTACCCTTTTTCAAGTTGTTTGTCTGAACTGAGTAAATCAGGGTATGTCTGTCAAATATAACATCATAATGAGAACCTACACCACTTCCCCTGAATGAAGTATAAGTAGGTTTGGGATGGGGAGAGTGATTTTGCCTTTATACCTTGGATCTACCAAATAAGAGCGCCTCCATGATTTTAGATCACTTTGCTACAGTTGTGTAAGTGCTCTAATATACCTTGTACCCTATCATTTTAGTGGCGGATCCAAGATTTTCACTAAGGGGGTTCGAGAATAAAATGTAGTGGCTGGGATTCGAACTTGAAACCTTAAGGTAAATTTTGAACCTCTTTAAATTACTGGGTCGACCTCTAGTCTAGTATTTAGGAGATTCAAAATCTATGTATGAAAATAAAAAAACAAATACTATATACATACAATGTAACTATTTGTCGAGGGGCCGGAGGGGATTGGTGAACACCCTTTGTTTCCCTAGATCGTCCCTGCCTATCTAAGATGAACATGAGCTTAACACTTACTCCGTGGAATTGGACATAATTTACTTTGGTCGCACTACTATTCCTAAAGAGAGAGAGCCAAATTCTCTTAGACAATTTGGAGATGTCATGCCTGCATTTGCCTAAATTAGCATGATATTGTGCTTAATAGAATGTGTGTTATGCAGGTTCTCTTCTGGAAATAAGTTTCCTTGATCTTTCACCCAATAAACAAAATAGATACAAGAAACAAAGAAATATAGAGGAGCTGACATTAGCTTGAACTATATGCATTCATCATCTTTTCCAAATCATGAAGCTTAATGCTATTGTTTGGCAACACTACTCTCTCTCATGCTGCCCGACACTTACTCTTGCTTGAAATCGGAAGTGTCGAGCCATTTTACAGAAACAGTTGTCATGATAATATTGTTCTTCTACCTAATGCAGGGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTG</genome_strand>
        <mrna_strand>GACATCATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAGAAGAACTAAATGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTTATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAATCCAACGATTTGTTATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692687" ref_strand="+" ref_description="SGN-E692687 [LH_Ea09F21]">
      <seq>cttttttttagatgcatttttgtttaatccgccattcttgtcatccccaattgaaagaattaaagatcaaaaagtgaaacacgggatcagatttgcaactagtgttataacagctggacttgcttttgctgccaagcataaaaacgtgaataatcaatctggagatacatttgttgcattatctgcatggacaccatgcctatatgtgaatccatcggatcctatttgcgcagaatacattggctattttgaacaccgggaaaagatggatacaatgggagcaggagttatcgagaagttagcaacccaacactcacttggtggtcttgtcttgaatttcatggggaaggagtgtgatgagccattgcacctaattccatcagccaatttaacagtaaatttgactcctccgtcagacttcaaaggagctcatggaattcaccaatggtggaatcctgatttacttgtagagtccaagaaacaccagtttacatgaatgatgatataaaacgaagaccactacaccgatagatggtatgtttgtctattttgtatccctggtcgggtatatttatagttatcaacacattacattttgctcttagcttaatagttgtgccttctactggtgctaaagtttctttacagatgcattgtcatctcttgttacctttgattcgttcatgtttctatgttttggtgaatctatctatcagttctgtgcctcatcctattacctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="60239" stop="61587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60537" g_stop="61293" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E692687" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60537" e_stop="61293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTG</genome_strand>
        <mrna_strand>CTTTTTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCATCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCAACTAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGTTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGAATTCACCAATGGTGGAATCCTGATTTACTTGTAGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACGAAGACCACTACACCGATAGATGGTATGTTTGTCTATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTTTGCTCTTAGCTTAATAGTTGTGCCTTCTACTGGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTT----T---G----ATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCTATCAGTTCTGTGCCTCATCCTATTACCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696527" ref_strand="+" ref_description="SGN-E696527 [LH_Ea09F21](-)">
      <seq>atttttagatgcatttttgtttaatccgccattcttgtcagccccaattgaaagaattaaagatcaaaaagtgaaacacgggatcagatttgcaactagtgttataacagctggacttgcttttgctgccaagcataaaaacgtgaataatcaatctggagatacatttgttgcattatctgcatggacaccatgcctatatgtgaatccatcggatcctatttgcgcagaatacattggctattttgaacaccgggaaaagatggatacaatgggagcaggagttatcgagaagttagcaacccaacactcacttggtggtcttgtcttgaatttcatggggaaggagtgtgatgagccattgcacctaattccatcagccaatttaacagtaaatttgactcctccgtcagacttcaaaggagctcatggaattcaccaatggtggaatcctgatttacttgtagagtccaagaaacaccagtttacatgaatgatgatataaaacgaagaccactacaccgatagatggtatgtttgtctattttgtatccctggtcgggtatatttatagttatcaacacattacattttgctcttagcttaatagttgtgccttctactggtgctaaagtttctttacagatgcattgtcatctcttgttacctttgattcgttcatgtttcaagggtttggtgaatctatctatcagttctgtgcctcatcctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="60240" stop="61584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60540" g_stop="61280" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E696527" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60540" e_stop="61280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTA</genome_strand>
        <mrna_strand>ATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCAGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCAACTAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGTTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGAATTCACCAATGGTGGAATCCTGATTTACTTGTAGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACGAAGACCACTACACCGATAGATGGTATGTTTGTCTATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTTTGCTCTTAGCTTAATAGTTGTGCCTTCTACTGGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTT----T---G----ATTCGTTCATGTTTCAAGGGTTTGGTGAATCTATCTATCAGTTCTGTGCCTCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232177" ref_strand="-" ref_description="SGN-E232177 [cLEL-5-J24](-)">
      <seq>tttttttttttttttttgaggcacagaactgatggatagattcaccaaaacatagaaacatgaacgaataaaactggagtcgaaggtaacaagagatgacaatgcatctgtaaagaaactttagcactagtagaaggcacaactattaagctaagagcacaatgtaatgtgttgataactataaatatacccgaccagggatacaaaatcgacaaacataccatctatcggtgtagtggtctttgttttatatcatcattcatgtaaactggtgtttcttggactcgacaagtaaatcaggtttccaccattggtgaataccatgagctcctttgaagtctgacggaggagtcaaatttactgttaaattggctgatggaattaggtgcaatggctcatcacactccttccccatgaaattcaagacaagaccaccaagtgagtgttgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131037" stop="60540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61564" g_stop="61558" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.429"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61557" i_stop="61285" i_length="273">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61284" g_stop="60840" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="452" r_length="445" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E232177" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61564" e_stop="61558"/>
          <exon e_start="61284" e_stop="60840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTGTGAGTGTGTGATACTTGTCTTATTTAACTACTGTTCTGTATATATTCGAAAGATCATAGAGAGTTTTCCTAATCGATTCCCCTGCCACGAGGACTCAACTGGACAAACGGTGAAAAGAATCTCAAAAGTTGTTCCCTTGAAACACGACATTAGTTCGAATACAAAAAAACAAACAAAAATAATCTCACAAGGGATACTTCTATAACAAAAATATTATCAATAATACAATGAGTAGTATATGCACAATTTCAATTCGTAACACTCAACAATAGGTAATAGGATGAGGCACAGAACTGATGGATAGATTCACCAAAACATAGAAACATGAACGAATAAAACTGGAGTCGAAGGTAACAAGAGATGACAATGCATCTGTAAAGAAACTTTAGCACTAGTAGAAGGCACAACTATTAAGCTAAGAGCACAATGTAATGTGTTGATAACTATAAATATACCCGACCAGGGATACAAAATCGACAAACATACCATCTATCGGTGTAGTGGTCTTTGTTTTATATCATCATTCATGTAAACTGGTGTTTCTTGGACTCGACAAGTAAATCAGGTTTCCACCATTGGTGAATACCATGAGCTCCTTTGAAGTCTGACGGAGGAGTCAAATTTACTGTTAAATTGGCTGATGGAATTAGGTGCAATGGCTCATCACACTCCTTCCCCATGAAATTCAAGACAAGACCACCAAGTGAGTGTTGGGTT</genome_strand>
        <mrna_strand>TTTTTTT.................................................................................................................................................................................................................................................................................TTTTTTTTTTGAGGCACAGAACTGATGGATAGATTCACCAAAACATAGAAACATGAACGAATAAAACTGGAGTCGAAGGTAACAAGAGATGACAATGCATCTGTAAAGAAACTTTAGCACTAGTAGAAGGCACAACTATTAAGCTAAGAGCACAATGTAATGTGTTGATAACTATAAATATACCCGACCAGGGATACAAAATCGACAAACATACCATCTATCGGTGTAGTGGTCTTTGTTTTATATCATCATTCATGTAAACTGGTGTTTCTTGGACTCGACAAGTAAATCAGGTTTCCACCATTGGTGAATACCATGAGCTCCTTTGAAGTCTGACGGAGGAGTCAAATTTACTGTTAAATTGGCTGATGGAATTAGGTGCAATGGCTCATCACACTCCTTCCCCATGAAATTCAAGACAAGACCACCAAGTGAGTGTTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232677" ref_strand="-" ref_description="SGN-E232677 [cLEL-5-J24](-)">
      <seq>tttttttttttttttttgaggcacagaactgatggatagattcaccaaaacatagaaacatgaacgaataaaactggagtcgaaggtaacaagagatgacaatgcatctgtaaagaaactttagcactagtagaaggcacaactattaagctaagagcacaatgtaatgtgttgataactataaatatacccgaccagggatacaaaatcgacaaacataccatctatcggtgtagtggtctttgttttatatcatcattcatgtaaactggtgtttcttggactcgacaagtaaatcaggtttccaccattggtgaataccatgagctcctttgaagtctgacggaggagtcaaatttactgttaaattggctgatggaattaggtgcaatggctcatcacactccttccccatgaaattcaagacaagaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131037" stop="60557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61564" g_stop="61558" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.429"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61557" i_stop="61285" i_length="273">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61284" g_stop="60857" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="435" r_length="428" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E232677" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232677" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61564" e_stop="61558"/>
          <exon e_start="61284" e_stop="60857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTGTGAGTGTGTGATACTTGTCTTATTTAACTACTGTTCTGTATATATTCGAAAGATCATAGAGAGTTTTCCTAATCGATTCCCCTGCCACGAGGACTCAACTGGACAAACGGTGAAAAGAATCTCAAAAGTTGTTCCCTTGAAACACGACATTAGTTCGAATACAAAAAAACAAACAAAAATAATCTCACAAGGGATACTTCTATAACAAAAATATTATCAATAATACAATGAGTAGTATATGCACAATTTCAATTCGTAACACTCAACAATAGGTAATAGGATGAGGCACAGAACTGATGGATAGATTCACCAAAACATAGAAACATGAACGAATAAAACTGGAGTCGAAGGTAACAAGAGATGACAATGCATCTGTAAAGAAACTTTAGCACTAGTAGAAGGCACAACTATTAAGCTAAGAGCACAATGTAATGTGTTGATAACTATAAATATACCCGACCAGGGATACAAAATCGACAAACATACCATCTATCGGTGTAGTGGTCTTTGTTTTATATCATCATTCATGTAAACTGGTGTTTCTTGGACTCGACAAGTAAATCAGGTTTCCACCATTGGTGAATACCATGAGCTCCTTTGAAGTCTGACGGAGGAGTCAAATTTACTGTTAAATTGGCTGATGGAATTAGGTGCAATGGCTCATCACACTCCTTCCCCATGAAATTCAAGACAAGACCAC</genome_strand>
        <mrna_strand>TTTTTTT.................................................................................................................................................................................................................................................................................TTTTTTTTTTGAGGCACAGAACTGATGGATAGATTCACCAAAACATAGAAACATGAACGAATAAAACTGGAGTCGAAGGTAACAAGAGATGACAATGCATCTGTAAAGAAACTTTAGCACTAGTAGAAGGCACAACTATTAAGCTAAGAGCACAATGTAATGTGTTGATAACTATAAATATACCCGACCAGGGATACAAAATCGACAAACATACCATCTATCGGTGTAGTGGTCTTTGTTTTATATCATCATTCATGTAAACTGGTGTTTCTTGGACTCGACAAGTAAATCAGGTTTCCACCATTGGTGAATACCATGAGCTCCTTTGAAGTCTGACGGAGGAGTCAAATTTACTGTTAAATTGGCTGATGGAATTAGGTGCAATGGCTCATCACACTCCTTCCCCATGAAATTCAAGACAAGACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548689" ref_strand="-" ref_description="SGN-E548689 [TUS-63-I9](-)">
      <seq>tgggtacgggcccccctcgagttttttttttttttttttttaagaaaaaattttttttacaattactctgaaaatcactaccaaacacaaaaatacactaaaccaaaaaaataataattaaaactaaaaaaactaataatttgcgagctattacatttgagcggatttttttttagttaaataaaataactaacagtggaaagccgtaacagatccatcactgacagaaatatcaattctacattcagctttactctccacatgatgtgtaaaaaaatggagcattctaacccgacccgccatttccaatctcgactccacttccatactagatccgacccgaaacccactcagcccatccgtcaccgtcggcccacccacactctccggttgtccattcaccgttaacggaaacgccttcaccgaaaacgtcgccgccatatactgagtccgacccgaattaatttttccggcgggtacaaacatgaacccgattcgattacccgaataaagtaactgcagggaactgtcatagtgagcaaattcatcgtgatttgggttttcgattgagacgtattgagaaaatgtgaagttcacggtgccgttcgaggcggagaaagagggaagctgaatggagttaacggtgataatgggggattttaggttttgaaaagagtngaagtaaggatgaagatgatgatgaagatgaagattagaaaattgttgcaactatacatgaagctaaatttgtacgtccacttggaggtttacgagatttaaccatttttattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56890" stop="66226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64610" g_stop="64646" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.459"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64647" i_stop="65168" i_length="522">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65169" g_stop="65926" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="795" r_length="758" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E548689" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548689" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64610" e_stop="64646"/>
          <exon e_start="65169" e_stop="65926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACATTCCTCTTAAAATCCTTCATTTTTATGGCATGTTCTTTTTTACTTTTCTAATTGTAGTTTTGCATTTTTTATTAATCAATAAATAATAATCATTAACTTTAAACAGAAAGAAACAAGGATTATCTTTCCAGCTAATGCTGATCATAAAACTCAAGACACTATGGTCTTCTTTATTATTTTTTAACAAAACTAACAATAGGATTTTTTTTAATAAATCAAATTAAGTGATAAATATTCATTCATCATTAATTTAAAATTTTAGATTCAAATCATTTTTATCAAAAAGGTTTTATATGGAACTTTCTAAACGTAAAATTAAAGACGAATATGAAATGCAAAGTCGAGAGTCATTCTAAAGCAGTCTCATTACCATTACAAGATGTAGTTAGTTTCATATGCTCTTCACAATCTTCACTAATAAAATTACATTAAACATTATAATATAAATATCAAAATTACATTAAACATTATAATATAAATATCAAACGTTAAAATTCAACAATAAACAAAAAAAAAGAATTATAATAATATATCCAACAATAAAGCAAATAATAAGAAAAACATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGA-TTTAGG-TTTGAAAAGAGT-GAAGTAAAGGATGAAGATGATGATGAAGATGAAGATTAAGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCT</genome_strand>
        <mrna_strand>TGGGTACGGGCCCCCCTCGAGTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGAAAAA-ATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGATTTTAGGTTTTGAAAAGAGTNGAAGT-AAGGATGAAGATGATGATGAAGATGAAGATT-AGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712910" ref_strand="+" ref_description="SGN-E712910 [FB06AF09]">
      <seq>cggtaccgtgaacttcacattttctcaatacgtctcaatcgaaaacccaaatcacgatgaatttgctcactatgacagttccctgcagttactttattcgggtaatcgaatcgggttcatgtttgtacccgccggaaaaattaattcgggtcggactcagtatatggcggcgacgttttcggtgaaggcgtttccgttaacggtgaatggacaaccggagagtgtgggtgggccgacggtgacggatgggctgagtgggtttcgggtcggatctagtatggaagtggagtcgagattggaaatggcgggtcgggttagaatgctccatttttttacacatcatgtggagagtaaagctgaatgtagaattgatatttctgtcagtgatggatctgttacggctttccactgttagttattttatttaactaaaaaaaaatccgctcaaatgtaatagctcgcaaattattagtttttttagttttaattattatttttttggtttagtgtatttttgtgtttggtagtgattttcagagtaattgtaaaaaaaatgtttttcttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="66036" stop="64869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65736" g_stop="65170" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="578"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E712910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65736" e_stop="65170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGATCTGTTACGGCTTTCCACTGTTAGTTATTTTATTTAACTAAAAAAAAATCCGCTCAAATGTAATAGCTCGCAAATTATTAGTTTTTTTAGTTTTAATTATTATTTTTTTGGTTTAGTGTATTTTTGTGTTTGGTAGTGATTTTCAGAGTAATTGTAAAAAAAATGTTTTTCTTATT</genome_strand>
        <mrna_strand>CGGTACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGATCTGTTACGGCTTTCCACTGTTAGTTATTTTATTTAACTAAAAAAAAATCCGCTCAAATGTAATAGCTCGCAAATTATTAGTTTTTTTAGTTTTAATTATTATTTTTTTGGTTTAGTGTATTTTTGTGTTTGGTAGTGATTTTCAGAGTAATTGTAAAAAAAATGTTTTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300180" ref_strand="+" ref_description="SGN-E300180 [cLEW-17-G3]">
      <seq>ttgtctttttctctaaacaaaacatttttgtgaatttcttcttcacagaaaataaaaatggttaaatctcgtaaacctccaagtggacgtacaaatttagcttcatgtatagttgcaacaattttcttaatcttcatcttcatcatcatcttcatcctttacttcactcttttcaaacctaaatcccccattatcaccgttaactccattcagcttccctctttctccgcctcgaacggcaccgtgaacttcacattttctcaatacgtctcaatcgaaaacccaaatcacgatgaatttgctcactatgacagttccctgcagttactttattcgggtaatcgaatcgggttcatgtttgtacccgccggaaaaattaattcgggtcggactcagtatatggcggcgacgttttcggtgaaggcgtttccgttaacggtgaatggacaaccggagagtgtgggtgggccgacggtgacggatgggctgagtgggtttcgggtcggatctagtatggaagtggagtcgagattggaaatggcgggtcgggttagaatgctccatttttttacacatcatgtggagagtaaagctgaatgtagaattgatatttctgtcagtgatggatctgttacggctttccactgttagttattttatttaactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="66272" stop="64999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65972" g_stop="65299" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E300180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65972" e_stop="65299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGGTTAAATCTCGTAAACCTCCAAGTGGACGTACAAATTTAGCTTCATGTATAGTTGCAACAATTTTCTTAATCTTCATCTTCATCATCATCTTCATCCTTTACTTCACTCTTTTCAAACCTAAATCCCCCATTATCACCGTTAACTCCATTCAGCTTCCCTCTTTCTCCGCCTCGAACGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGATCTGTTACGGCTTTCCACTGTTAGTTATTTTATTTAACTAAAAAAAA</genome_strand>
        <mrna_strand>TTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGGTTAAATCTCGTAAACCTCCAAGTGGACGTACAAATTTAGCTTCATGTATAGTTGCAACAATTTTCTTAATCTTCATCTTCATCATCATCTTCATCCTTTACTTCACTCTTTTCAAACCTAAATCCCCCATTATCACCGTTAACTCCATTCAGCTTCCCTCTTTCTCCGCCTCGAACGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGATCTGTTACGGCTTTCCACTGTTAGTTATTTTATTTAACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542291" ref_strand="+" ref_description="SGN-E542291 [TUS-63-I9]">
      <seq>cttgtctttttctctaaacaaaacatttttgtgaatttcttcttcacagaaaataaaaatggttaaatctcgtaaacctccaagtggacgtacaaatttagcttcatgtatagttgcaacaattttcttaatcttcatcttcatcatcatcttcatcctttacttcactcttttcaaacctaaatcccccattatcaccgttaactccattcagcttccctctttctccgcctcgaacggcaccgtgaacttcacattttctcaatacgtctcaatcgaaaacccaaatcacgatgaatttgctcactatgacagttccctgcagttactttattcgggtaatcgaatcgggttcatgtttgtacccgccggaaaaattaattcgggtcggactcagtatatggcggcgacgttttcggtgaaggcgtttccgttaacggtgaatggacaaccggagagtgtgggtgggccgacggtgacggatgggctgagtgggtttcgggtcggatctagtatggaagtggagtcgagattggaaatggcgggtcgggttagaatgctccatttttttacacatcatgtggagagtaaagctgaatgtagaattgatatttctgtcagtgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="66273" stop="65045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65345" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E542291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGGTTAAATCTCGTAAACCTCCAAGTGGACGTACAAATTTAGCTTCATGTATAGTTGCAACAATTTTCTTAATCTTCATCTTCATCATCATCTTCATCCTTTACTTCACTCTTTTCAAACCTAAATCCCCCATTATCACCGTTAACTCCATTCAGCTTCCCTCTTTCTCCGCCTCGAACGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGAT</genome_strand>
        <mrna_strand>CTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGGTTAAATCTCGTAAACCTCCAAGTGGACGTACAAATTTAGCTTCATGTATAGTTGCAACAATTTTCTTAATCTTCATCTTCATCATCATCTTCATCCTTTACTTCACTCTTTTCAAACCTAAATCCCCCATTATCACCGTTAACTCCATTCAGCTTCCCTCTTTCTCCGCCTCGAACGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547216" ref_strand="+" ref_description="SGN-E547216 [TUS-70-P18](-)">
      <seq>gtagagacaggacttacaccatttgacatcggaaatatgatgtgcagggaaaccttgaacaaggaatctgtaatcgaggaaatcattcgtgatgctgaagattctatgcttcctggcatgactgaagctacatttcttgaaactgtctacaagctcatggatatcaagcttgagaagctaaaatataaatcttcctaaggattgtaagtatgtatcttcaattctgttgtatgtatatagcgttcggtccatatatatatataaatggactgaatggagataggaaaggttgatgactgaccttgtctgtctatggtcggaaacctttttccctctcaacttctgctcattaccaataatggtggttcttcaaatatggagcagaagttgcaatatgcaataaataataaataaaacaaactgttatttgtaaaacagttgtcatgtatcctttctcaatgagtaaagtgatactgagttttatgtacaaaagctatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="67824" stop="56902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67524" g_stop="67020" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65924" g_stop="65912" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="515" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E547216" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67524" e_stop="67020"/>
          <exon e_start="65924" e_stop="65912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAA-GGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAATGCCTTCTCTCAGTAAGCAGCACTAACACTAACTTGTGAAATTTTATGTTTACTAAAGGATTTTAGTTAGCCTTGGCGCAATGTTAAAAGTTGAGCTCATCACGCGTGGCTTGAAAAGTAAAAGTGAAAAATGAGGTAAAAGATACCTATTATAAATAGTTTTTGAAGTATAAAATTGCCTCTCTGTCTCCCATATTTGATGAAATGAATCTCCCTTTACTAAGGTAAAAGAAATCCATGACTAAAGCAATTTTTTTCTAGCATTATAAAAACTTGAGGTACAACTTTTAAATTCATTTAAAAACTTTTATTCTTCTATCTGCTTTTGAGTCCCATGTATGGACTTATCCACTTCAAAAAAGAAATAAAGTGAAAAGTAATTAAATTGTGGTCCAATGGTTGATTAAGTTAATGAATTTCATATTTAAATTTTACTAAATAGAATAATAAATACTTTTTCTTTGGATTTTTTGATAGTTCATTGGAAAATGGTTATGCTAAGTCTTCATTTGCATTAGGTCCCTTTGCATTATATAGAATTAAGTTACTAACACATGAGTAACTTAAATATTGCTTCCGTTTCAGTTTGATTGTCTTTTTTTTTTTTTAGTTCGTTTAAAAAAGAACATTTTCAAGACTTACATTTAGTATATATTTAATTTAAGATCGCGAAATTTAAAAGTCTTTTTATTTACTTATTCTTCATATCAAATCAAAACAAGACAAACAAATTAAAACAAAAACGATGCACATATTTTCCTAATTAACTTGTATGTTACTAATATCAATATAACTCAAATACTTACGCTAATACAAAATAATACATATACACTAAATTTTATCTAAATACGTATGTAATATGTTACTATAAAATTTTATCGAGATACACGTAAACTGATCCGAACAAACCATTACTCATTCCCCTCAAAGAAGTGACAAAAAGAACAGAAATTACGCAAAAAGAAAGTCCACATTTTCACACACACTCTTTATATCACTTTATTGAACCCAAAAATCAACACAAATTCCATTTTTTTTCCCCAATCACTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGG</genome_strand>
        <mrna_strand>GTAGAGACAGGACTTACACCATTTGACATCGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCC--ATATATATATATAAATGGACTGAATGGAGATAGGAAAGGTTGATGACTGACCTTGTCTGTCTATGGTCGGAAACC--TTTTTCCCTCTCAACTTCTGCTCATTACCAATAATGGTGGTTCTTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAACTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAGTTTTATGTACAAAAGCTATCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549499" ref_strand="+" ref_description="SGN-E549499 [TUS-70-P18]">
      <seq>gtagagacaggacttacaccatttgacatcggaaatatgatgtgcagggaaaccttgaacaaggaatctgtaatcgaggaaatcattcgtgatgctgaagattctatgcttcctggcatgactgaagctacatttcttgaaactgtctacaagctcatggatatcaagcttgagaagctaaaatataaatcttcctaaggattgtaagtatgtatcttcaattctgttgtatgtatatagcgttcggtccatatatatatataaatggactgaatggagataggaaaggttgatgactgaccttgtctgtctatggtcggaaacctttttccctctcaacttctgctcattaccaataatggtggttcttcaaatatggagcagaagttgcaatatgcaataaataataaataaaacaaactgttatttgtaaaacagttgtcatgtatcctttctcaatgagtaaagtgatactgagttttatgtacaaaagctatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="67824" stop="56902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67524" g_stop="67020" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65924" g_stop="65912" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="515" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E549499" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67524" e_stop="67020"/>
          <exon e_start="65924" e_stop="65912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAA-GGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAATGCCTTCTCTCAGTAAGCAGCACTAACACTAACTTGTGAAATTTTATGTTTACTAAAGGATTTTAGTTAGCCTTGGCGCAATGTTAAAAGTTGAGCTCATCACGCGTGGCTTGAAAAGTAAAAGTGAAAAATGAGGTAAAAGATACCTATTATAAATAGTTTTTGAAGTATAAAATTGCCTCTCTGTCTCCCATATTTGATGAAATGAATCTCCCTTTACTAAGGTAAAAGAAATCCATGACTAAAGCAATTTTTTTCTAGCATTATAAAAACTTGAGGTACAACTTTTAAATTCATTTAAAAACTTTTATTCTTCTATCTGCTTTTGAGTCCCATGTATGGACTTATCCACTTCAAAAAAGAAATAAAGTGAAAAGTAATTAAATTGTGGTCCAATGGTTGATTAAGTTAATGAATTTCATATTTAAATTTTACTAAATAGAATAATAAATACTTTTTCTTTGGATTTTTTGATAGTTCATTGGAAAATGGTTATGCTAAGTCTTCATTTGCATTAGGTCCCTTTGCATTATATAGAATTAAGTTACTAACACATGAGTAACTTAAATATTGCTTCCGTTTCAGTTTGATTGTCTTTTTTTTTTTTTAGTTCGTTTAAAAAAGAACATTTTCAAGACTTACATTTAGTATATATTTAATTTAAGATCGCGAAATTTAAAAGTCTTTTTATTTACTTATTCTTCATATCAAATCAAAACAAGACAAACAAATTAAAACAAAAACGATGCACATATTTTCCTAATTAACTTGTATGTTACTAATATCAATATAACTCAAATACTTACGCTAATACAAAATAATACATATACACTAAATTTTATCTAAATACGTATGTAATATGTTACTATAAAATTTTATCGAGATACACGTAAACTGATCCGAACAAACCATTACTCATTCCCCTCAAAGAAGTGACAAAAAGAACAGAAATTACGCAAAAAGAAAGTCCACATTTTCACACACACTCTTTATATCACTTTATTGAACCCAAAAATCAACACAAATTCCATTTTTTTTCCCCAATCACTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGG</genome_strand>
        <mrna_strand>GTAGAGACAGGACTTACACCATTTGACATCGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCC--ATATATATATATAAATGGACTGAATGGAGATAGGAAAGGTTGATGACTGACCTTGTCTGTCTATGGTCGGAAACC--TTTTTCCCTCTCAACTTCTGCTCATTACCAATAATGGTGGTTCTTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAACTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAGTTTTATGTACAAAAGCTATCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359896" ref_strand="+" ref_description="SGN-E359896 [cLPP-9-D16]">
      <seq>tagagacaggacttacaccatttgacatcggaaatatgatgtgcagggaaaccttgaacaaggaatctgtaatcgaggaaatcattcgtgatgctgaagattctatgcttcctggcatgactgaagctacatttcttgaaactgtctacaagctcatggatatcaagcttgagaagctaaaatataaatcttcctaaggattgtaagtatgtatcttcaattctgttgtatgtatatagcgttcggtccatatatatatataaatggactgaatggagataggaaaggttgatgactgaccttgtctgtctatggtcggaaacctttttccctctcaacttctgctcattaccaataatggtggttcttcaaatatggagcagaagttgcaatatgcaataaataataaataaaacaaactgttatttgtaaaacagttgtcatgtatcctttctcaatgagtaaagtgatactgagttttatgtacaaaagctatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="67823" stop="56902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67523" g_stop="67020" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65924" g_stop="65912" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="514" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E359896" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67523" e_stop="67020"/>
          <exon e_start="65924" e_stop="65912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAA-GGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAATGCCTTCTCTCAGTAAGCAGCACTAACACTAACTTGTGAAATTTTATGTTTACTAAAGGATTTTAGTTAGCCTTGGCGCAATGTTAAAAGTTGAGCTCATCACGCGTGGCTTGAAAAGTAAAAGTGAAAAATGAGGTAAAAGATACCTATTATAAATAGTTTTTGAAGTATAAAATTGCCTCTCTGTCTCCCATATTTGATGAAATGAATCTCCCTTTACTAAGGTAAAAGAAATCCATGACTAAAGCAATTTTTTTCTAGCATTATAAAAACTTGAGGTACAACTTTTAAATTCATTTAAAAACTTTTATTCTTCTATCTGCTTTTGAGTCCCATGTATGGACTTATCCACTTCAAAAAAGAAATAAAGTGAAAAGTAATTAAATTGTGGTCCAATGGTTGATTAAGTTAATGAATTTCATATTTAAATTTTACTAAATAGAATAATAAATACTTTTTCTTTGGATTTTTTGATAGTTCATTGGAAAATGGTTATGCTAAGTCTTCATTTGCATTAGGTCCCTTTGCATTATATAGAATTAAGTTACTAACACATGAGTAACTTAAATATTGCTTCCGTTTCAGTTTGATTGTCTTTTTTTTTTTTTAGTTCGTTTAAAAAAGAACATTTTCAAGACTTACATTTAGTATATATTTAATTTAAGATCGCGAAATTTAAAAGTCTTTTTATTTACTTATTCTTCATATCAAATCAAAACAAGACAAACAAATTAAAACAAAAACGATGCACATATTTTCCTAATTAACTTGTATGTTACTAATATCAATATAACTCAAATACTTACGCTAATACAAAATAATACATATACACTAAATTTTATCTAAATACGTATGTAATATGTTACTATAAAATTTTATCGAGATACACGTAAACTGATCCGAACAAACCATTACTCATTCCCCTCAAAGAAGTGACAAAAAGAACAGAAATTACGCAAAAAGAAAGTCCACATTTTCACACACACTCTTTATATCACTTTATTGAACCCAAAAATCAACACAAATTCCATTTTTTTTCCCCAATCACTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGG</genome_strand>
        <mrna_strand>TAGAGACAGGACTTACACCATTTGACATCGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCC--ATATATATATATAAATGGACTGAATGGAGATAGGAAAGGTTGATGACTGACCTTGTCTGTCTATGGTCGGAAACC--TTTTTCCCTCTCAACTTCTGCTCATTACCAATAATGGTGGTTCTTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAACTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAGTTTTATGTACAAAAGCTATCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275243" ref_strand="+" ref_description="SGN-E275243 [cLEN-9-G4]">
      <seq>atgttgccatttttaagcctattgatgaggaaccgctagctgtgaataaccctcaagggctacctttatctaccaacggtgaagggttgaaaaggggaacccgagttggagaaggtgcattcagggaggttgcagctttccttctggaccatccaaggaccgggcaacgaacattgtccaattgtgagataggcttttccggtgtgcctcccactgttatggttcagtgcttgcacaatacatttcatcatcctgatggatttgagtggtcatctgaatataccaaaattggctcactgcagctgtttatgaagaatgaaggaaattgtgaggatatgggtccagggatatttcctgttgaggaagtccataagattactgtctttgacataagaacagcaaatgctgataggcatgctgggaatattcttgtgagcagggaagggaaagaaggacgaatcgtgcttacaccaattgaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="69032" stop="67951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68732" g_stop="68251" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E275243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68732" e_stop="68251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</genome_strand>
        <mrna_strand>ATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316899" ref_strand="+" ref_description="SGN-E316899 [cTOA-27-M22]">
      <seq>ggtgaggaacttaaggttcaagagctattctgtaatggtgagaagcttgaggatcagaagctcatcgatgatattactgctgatgcagtgattcacttggtagttcagaaatttgcaaagcttcgggctaagcatgccgagagggatgttgaactttctgttgttgcagctaattggcatgaggagacccaaagtcagggtgaacatgaaccatccagggagttacagtccttctccaagaagacacctgatacaaatttggtgttggaaccttttgttgttgatccaaatgttgaacttccaggatatatctgggacatgatcaactctgcatgtgatggattgacgaaaggcaatatacctatccgatcatctgaagggactggaggaacttatttcatgcaggacgggtctggcaacaagtatgttgccatttttaagcctattgatgaggaaccgctagctgtgaataaccctcaagggctacctttatctaccaacggtgaagggttgaaaaggggaacccgagttggagaaggtgcattcagggaggttgcagctttccttctggaccatccaaggaccgggcaacgaacattgtccaattgtgagataggcttttccggtgtgcctcccactgttatggttcagtgcttgcacaatacatttcatcatcctgatggatttgagtggtcatctgaatataccaaaattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="69456" stop="68139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69156" g_stop="68439" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E316899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69156" e_stop="68439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCT</genome_strand>
        <mrna_strand>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376549" ref_strand="+" ref_description="SGN-E376549 [TUS-17-L11]">
      <seq>ctgtattaaggcccaaaaaaatagttgaatttcccaaagttttaatctcatcttcctcttttaattcgccgcccttgactacatctacttcaaaaactttaaatttatatgtcttatatctatgaagctccggatgatgagcaaatcgggtaataaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93751" stop="94938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94051" g_stop="94638" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E376549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94051" e_stop="94638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCA</genome_strand>
        <mrna_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208433" ref_strand="+" ref_description="SGN-E208433 [cLEC-37-B12]">
      <seq>ctgtattaaggcccaaaaaaatagttgaatttcccaaagttttaatctcatcttcctcttttaattcgccgcccttgactacatctacttcaaaaactttaaatttatatgtcttatatctatgaagctccggatgatgagcaaatcgggtaataaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93751" stop="94880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94051" g_stop="94580" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E208433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94051" e_stop="94580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATT</genome_strand>
        <mrna_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378770" ref_strand="+" ref_description="SGN-E378770 [TUS-31-H5]">
      <seq>atgatgagcaaatcgggtaatcaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctatttttttttttggttacaactgcatatatattggcgcaagttttcctatttttattctatttctatattaataggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93884" stop="95362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94184" g_stop="95062" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E378770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94184" e_stop="95062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTT</genome_strand>
        <mrna_strand>ATGATGAGCAAATCGGGTAATCAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTAC-AACTGC-ATATATATTGGCGCAAGTTTTCCTATTTTTATTC-TATTTCTATATTAAT-AGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373337" ref_strand="+" ref_description="SGN-E373337 [TUS-31-H5]">
      <seq>atgatgagcaaatcgggtaataaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93884" stop="95145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94184" g_stop="94845" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E373337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94184" e_stop="94845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTT</genome_strand>
        <mrna_strand>ATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287862" ref_strand="+" ref_description="SGN-E287862 [cLES-19-K13]">
      <seq>atgatgagcaaatcgggtaataaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctcttccgtagtatcatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93884" stop="94961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94184" g_stop="94661" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E287862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94184" e_stop="94661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATG</genome_strand>
        <mrna_strand>ATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTTCCGTAGTATCATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373336" ref_strand="+" ref_description="SGN-E373336 [TUS-31-H5](-)">
      <seq>atttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctatttttttttttggttacaaactgcaatatatattggcgcaagttttcctatttttattcgtatttctatattaataaggattttgaacaagcccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="94068" stop="95379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94368" g_stop="95085" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E373336" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94368" e_stop="95085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAATATTTGTA</genome_strand>
        <mrna_strand>ATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376548" ref_strand="+" ref_description="SGN-E376548 [TUS-17-L11](-)">
      <seq>catgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctatttttttttttggttacaaactgcaatatatattggcgcaagttttcctatttttattcgtatttctatattaataaggattttgaacaagcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="94093" stop="95379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94393" g_stop="95081" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E376548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94393" e_stop="95081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAATATT</genome_strand>
        <mrna_strand>CATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357339" ref_strand="+" ref_description="SGN-E357339 [cTOS-23-M4]">
      <seq>taatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctatttttttttttgttacnaactgcaatatatattggcgcaagtttttccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="94159" stop="95328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94459" g_stop="95031" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E357339" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94459" e_stop="95031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTT</genome_strand>
        <mrna_strand>TAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTT-GTTACNAACTGCAATATATATTGGCGCAAGTTTTTCCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350863" ref_strand="+" ref_description="SGN-E350863 [cTOS-7-C14]">
      <seq>taatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctattttttttttggttacaaactgcaatatatattggcgcaagttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="94159" stop="95326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94459" g_stop="95027" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E350863" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94459" e_stop="95027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCT</genome_strand>
        <mrna_strand>TAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTA-TTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736938" ref_strand="+" ref_description="SGN-E736938 [LC07DE04]">
      <seq>cgattaaacaaattgcagagctaaaaggactccaattggttcactaaaaatgcttcttcacaaatccaaaatctcagttcaatgagtatcagttcagtaaacatgtctttttcaacaggtaacaattttatatcagcaaggtccatttctcatccaaagcccaacattcagcttcaaagttcattcgtaatcaaatccccatttcagaaaagttatacaaatcctatttttcatagaaatttcagaaaaagatcacatttttaccattccccatatgcaattcttggaaaatggaggtctaattcgaagtcctctgaagaaggggcaagcaataatgaagattttgtgactagggttttgaaagaaaacccaagccaagtggaacccaaatatctaattgggaataaactttacactctaaaggaaaaagaggatttgggtaagaagggtttattgaatggtggtgttttggagatactaaaaaggttaaatattaaaggaatggtgaagaatggaagtgatgagggtagtttaatgaagtctggggatgtgtttttgaaggatattttgagggagtataaagggaagttatatgttcctgagcaaatttttggtgctaatttgtctgaagaagaagaatttgaaaaaaatgttgaagatttgcctaagatgagcttgaaggattttcagaagtatatgaaatttgataagataaagttgttgacttttaaagaggatactggagcttcttttggattggggtctaaagattttattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="95776" stop="97155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96075" g_stop="96855" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E736938" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96075" e_stop="96855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTG</genome_strand>
        <mrna_strand>CGATTAAACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCACTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTTCTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTTGGATTGGGGTCTAAAGATTTTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738338" ref_strand="+" ref_description="SGN-E738338 [LC13BB09]">
      <seq>cctaaaaggactccaattggttcagtaaaaatgcttcttcacaaatccaaaatctcagttcaatgagtatcagttcagtaaacatgtctttttcaacaggtaacaattttatatcagcaaggtccattcttcatccaaagcccaacattcagcttcaaagttcattcgtaatcaaatccccatttcagaaaagttatacaaatcctatttttcatagaaatttcagaaaaagatcacatttttaccattccccatatgcaattcttggaaaatggaggtctaattcgaagtcctctgaagaaggggcaagcaataatgaagattttgtgactagggttttgaaagaaaacccaagccaagtggaacccaaatatctaattgggaataaactttacactctaaaggaaaaagaggatttgggtaagaagggtttattgaatggtggtgttttggagatactaaaaaggttaaatattaaaggaatggtgaagaatggaagtgatgagggtagtttaatgaagtctggggatgtgtttttgaaggatattttgagggagtataaagggaagttatatgttcctgagcaaatttttggtgctaatttgtctgaagaagaagaatttgaaaaaaatgttgaagatttgcctaagatgagcttgaaggattttcagaagtatatgaaatttgataagataaagttgttgacttttaaagaggatactggagcttctttgggattggggtctagagattttattgttgagttgaaggagatgcccggagagaagagcttgcagagaactaaatgggcaatgaagctggatcaaaatcaagctcaggctttactagaggagtacactggggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="95795" stop="97332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96094" g_stop="96901" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96902" i_stop="96974" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96975" g_stop="97033" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="867" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E738338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96094" e_stop="96901"/>
          <exon e_start="96975" e_stop="97033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATGGTTAGTATCATAAACTTGTTCATTTCTTTCACTTCAGATTATAGATTTTGATGTTTATGTGATCATTCTACAGGGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGCCAA</genome_strand>
        <mrna_strand>CCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATG.........................................................................GGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313921" ref_strand="+" ref_description="SGN-E313921 [cTOA-19-A23]">
      <seq>tccaattggttcagtaaaaatgcttcttcacaaatccaaaatctcagttcaatgagtatcagttcagtaaacatgtctttttcaacaggtaacaattttatatcagcaaggtccattcttcatccaaagcccaacattcagcttcaaagttcattcgtaatcaaatccccatttcagaaaagttatacaaatcctatttttcatagaaatttcagaaaaagatcacatttttaccattccccatatgcaattcttggaaaatggaggtctaattcgaagtcctctgaagaaggggcaagcaataatgaagattttgtgactagggttttgaaagaaaacccaagccaagtggaacccaaatatctaattgggaataaactttacactctaaaggaaaaagaggatttgggtaagaagggtttattgaatggtggtgttttggagatactaaaaaggttaaatattaaaggaatggtgaagaatggaagtgatgagggtagtttaatgaagtctggggatgtgtttttgaaggatattttgagggagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="95805" stop="96953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96105" g_stop="96653" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E313921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96105" e_stop="96653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTAT</genome_strand>
        <mrna_strand>TCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333483" ref_strand="+" ref_description="SGN-E333483 [cTOD-20-D19]">
      <seq>tatggcaaggcatagaattctctcagtcaaagccacaagcacgtgttgatggttcaactggagtcacatttaatgatgtagctgggattgaggaagcagtggaagaacttcaagagttggtaagatacctgaagaatcctgaactatttgataaattggggatcaagcccccacatggagttcttctggagggacctcctggatgtggaaagaccctggttgccaaggcaatagcaggtgaagctggtgttcctttttaccaaatggcgggttctgaatttgtggaagttctagtcggtgttggttctgctcgtattagagatttgttcaagagagccaaggtgaataaaccatcagttatcttcattgacgaaattgatgcactcgcaaccagacgtcaaggaatatttagtgaatcaactgatcacctctataacgcggcaactcaagaaagggaaactactttaaaccagttgttgatcgagctagatggatttgatactgggaaaggtgttatattcctaggggctacaaatcgaagggatttattagatcccgcccttcttcgtcctggtagatttgatcgcaagataagaattcggcctcccaatgcaaaaggaagattggaaattttgaaagtacatgcacggaaagtttaattatcagatactgttgatttgtctagttatgcccaaaatttacctggatggtcagggtgcaagctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="99044" stop="102006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99344" g_stop="99393" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99394" i_stop="99494" i_length="101">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99495" g_stop="99560" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99561" i_stop="99931" i_length="371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.111" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99932" g_stop="100027" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100028" i_stop="100114" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100115" g_stop="100243" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="341" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100321" g_stop="100373" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="394" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100689" g_stop="100884" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="590" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101588" g_stop="101702" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="705" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101909" g_stop="101932" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="729" r_length="24" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E333483" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99344" e_stop="99393"/>
          <exon e_start="99495" e_stop="99560"/>
          <exon e_start="99932" e_stop="100027"/>
          <exon e_start="100115" e_stop="100243"/>
          <exon e_start="100321" e_stop="100373"/>
          <exon e_start="100689" e_stop="100884"/>
          <exon e_start="101588" e_stop="101702"/>
          <exon e_start="101909" e_stop="101932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGATGTGAGTTTCTAGTTTCTCACACTCTCTGGTCACAAAAATTCACAACTTTTCATCTGTAGATTATGGCCAATATTTTGTCTAAGTAAGAAGTTTCTGTTTAGGGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAGGTAACAGCGCCTTACACCACATATAATACTTCCTTATTGTGTATTCCCTCCATCCCAATTTATGTGATGTAGTTTGTCTGGGCACAGAGTTTTCAGAAATACGAGAAGTGTTTGCCATATTCCAAAACTACCCTTAATAAATGAATTTTTATATAGAAGAGCACATCTTTGTAGACTTTTTGCCAAATAAGTGGTCCAATATGGGTAAAGTGTTGATAGTGTCATTAAACATTTACCAAAGAAGGAAAGTGTGTCACGTAAACTAGGATAGGGAGAGTAATATTCTCTTACATTATAATGTGTGAAAGCTTGTCCCTCAGCCACAACCTTTAGCTTAATGGTTCTAATTCCTTCCATTTTTTGCCAACTAGTTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAGGTATGCTATCCATTTCAGACCTTAGATTGGATTCCCAAAAAAAAAGTAGAGGGTCTTCACTAAAATTATATATGATGCTTTTCTCAGACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAGGTGAGCATAATACGTAGTCAATGAACCATGTGACTTCCCTTATTATGTTTTGAATAATGCCCTAATTGTTGTCACAGGTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAGGTATGGATATTTGTCTAAATAAGTAATGGTGAACGTGTTTTTTTTTTACTGGTTTAGCTTAGCACAAAGGAAAATCTGGAGCTGAAGCATCTGGGCATTTTTCATCTAAGTAACCCCTTTAGTGGTAGAACTATTGAAATTGGGTTTTAGAACCTGAAGTTACTAATGTCATGTTGTGGACAATGCTAATGTCGTCAGTGTGTAGCTGTCTAGATATTCTTTTTAATCGTAAAGAAATAACTTAGTCATTCATAAATGACATGTAGACACGTGCAGTGGTTATAGTTTCTCAGACTTATTATTCTTAATAAACAGACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAGGTTTGTTCTCCTATTGAATTGAATTCTTTATCAACTCAGCTCCTCATGACTTGAATCACTCTATTCATGTTCTGTCGGTATGTGCGCATTGGTCGGGAGGAGGTAGACAAAATTTTCCATGTTTATAGAACATTCCTATTCATGATGTCTTGACTTACTGATTCTTTCCATAAAGATGTTTCTATATGCTGAATATTTTGATAAAAACTAATCAATCCCCCAAAAAGGTGTTATGATTCCACAACAAACTCTGTAATACAGTATGTTATTTTATGCAATGCCTAGTGTACTGCAAAGTTCCTTTACGAAGTCCTTGGATGGGGCTACTGTATTTGGGCTTTTGAATCCTAATAGGTGCTGTTTATGGGCAAAACATTGTTTGACTTGGAAGGTAGGAATCATTTTTTCGTTTCAGTCGACTTGTTAAATATGTTGAGACGCCGATAGCTTTTGGTAGATTCTATAGAGAATAAGTACCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTAATATAACATCATAAGTATAGTTTATTTGAGATAATGAGTCAGCTTAAGAAGTGTCGAATTACTTATAGTAGCTATGTAATCTTTATTCCTCACTTCTTTCTGGAACACCACATTTCATGCTTGTTACATTTCTCTCTTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTGGCTC</genome_strand>
        <mrna_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGAT.....................................................................................................GGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAG.......................................................................................ACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAG.............................................................................GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG...........................................................................................................................................................................................................................................................................................................................ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTTAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG..............................................................................................................................................................................................................GATGGTCAGGGTGCAAGCTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333207" ref_strand="+" ref_description="SGN-E333207 [cTOD-20-C22]">
      <seq>tatggcaaggcatagaattctctcagtcaaagccacaagcacgtgttgatggttcaactggagtcacatttaatgatgtagctgggattgaggaagcagtggaagaacttcaagagttggtaagatacctgaagaatcctgaactatttgataaattggggatcaagcccccacatggagttcttctggagggacctcctggatgtggaaagaccctggttgccaaggcaatagcaggtgaagctggtgttcctttttaccaaatggcgggttctgaatttgtggaagttctagtcggtgttggttctgctcgtattagagatttgttcaagagagccaaggtgaataaaccatcagttatcttcattgacgaaattgatgcactcgcaaccagacgtcaaggaatatttagtgaatcaactgatcacctctataacgcggcaactcaagaaagggaaactactttaaaccagttgttgatcgagctagatggatttgatactgggaaaggtgttatattcctaggggctacaaatcgaagggatttattagatcccgcccttcttcgtcctggtagatttgatcgcaagataagaattcggcctcccaatgcaaaaggaagattggnaattttgaaagtacatgcacggaaagttaaattatcagatactgttgatttgtctagttatgcccaaaatttactggatggtcaggtgcaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="99044" stop="102228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99344" g_stop="99393" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99394" i_stop="99494" i_length="101">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99495" g_stop="99560" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99561" i_stop="99931" i_length="371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.111" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99932" g_stop="100027" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100028" i_stop="100114" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100115" g_stop="100243" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="341" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100321" g_stop="100373" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="394" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100689" g_stop="100884" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="590" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101588" g_stop="101702" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="704" r_length="114" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101909" g_stop="101928" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="724" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E333207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99344" e_stop="99393"/>
          <exon e_start="99495" e_stop="99560"/>
          <exon e_start="99932" e_stop="100027"/>
          <exon e_start="100115" e_stop="100243"/>
          <exon e_start="100321" e_stop="100373"/>
          <exon e_start="100689" e_stop="100884"/>
          <exon e_start="101588" e_stop="101702"/>
          <exon e_start="101909" e_stop="101928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGATGTGAGTTTCTAGTTTCTCACACTCTCTGGTCACAAAAATTCACAACTTTTCATCTGTAGATTATGGCCAATATTTTGTCTAAGTAAGAAGTTTCTGTTTAGGGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAGGTAACAGCGCCTTACACCACATATAATACTTCCTTATTGTGTATTCCCTCCATCCCAATTTATGTGATGTAGTTTGTCTGGGCACAGAGTTTTCAGAAATACGAGAAGTGTTTGCCATATTCCAAAACTACCCTTAATAAATGAATTTTTATATAGAAGAGCACATCTTTGTAGACTTTTTGCCAAATAAGTGGTCCAATATGGGTAAAGTGTTGATAGTGTCATTAAACATTTACCAAAGAAGGAAAGTGTGTCACGTAAACTAGGATAGGGAGAGTAATATTCTCTTACATTATAATGTGTGAAAGCTTGTCCCTCAGCCACAACCTTTAGCTTAATGGTTCTAATTCCTTCCATTTTTTGCCAACTAGTTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAGGTATGCTATCCATTTCAGACCTTAGATTGGATTCCCAAAAAAAAAGTAGAGGGTCTTCACTAAAATTATATATGATGCTTTTCTCAGACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAGGTGAGCATAATACGTAGTCAATGAACCATGTGACTTCCCTTATTATGTTTTGAATAATGCCCTAATTGTTGTCACAGGTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAGGTATGGATATTTGTCTAAATAAGTAATGGTGAACGTGTTTTTTTTTTACTGGTTTAGCTTAGCACAAAGGAAAATCTGGAGCTGAAGCATCTGGGCATTTTTCATCTAAGTAACCCCTTTAGTGGTAGAACTATTGAAATTGGGTTTTAGAACCTGAAGTTACTAATGTCATGTTGTGGACAATGCTAATGTCGTCAGTGTGTAGCTGTCTAGATATTCTTTTTAATCGTAAAGAAATAACTTAGTCATTCATAAATGACATGTAGACACGTGCAGTGGTTATAGTTTCTCAGACTTATTATTCTTAATAAACAGACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAGGTTTGTTCTCCTATTGAATTGAATTCTTTATCAACTCAGCTCCTCATGACTTGAATCACTCTATTCATGTTCTGTCGGTATGTGCGCATTGGTCGGGAGGAGGTAGACAAAATTTTCCATGTTTATAGAACATTCCTATTCATGATGTCTTGACTTACTGATTCTTTCCATAAAGATGTTTCTATATGCTGAATATTTTGATAAAAACTAATCAATCCCCCAAAAAGGTGTTATGATTCCACAACAAACTCTGTAATACAGTATGTTATTTTATGCAATGCCTAGTGTACTGCAAAGTTCCTTTACGAAGTCCTTGGATGGGGCTACTGTATTTGGGCTTTTGAATCCTAATAGGTGCTGTTTATGGGCAAAACATTGTTTGACTTGGAAGGTAGGAATCATTTTTTCGTTTCAGTCGACTTGTTAAATATGTTGAGACGCCGATAGCTTTTGGTAGATTCTATAGAGAATAAGTACCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTAATATAACATCATAAGTATAGTTTATTTGAGATAATGAGTCAGCTTAAGAAGTGTCGAATTACTTATAGTAGCTATGTAATCTTTATTCCTCACTTCTTTCTGGAACACCACATTTCATGCTTGTTACATTTCTCTCTTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTG</genome_strand>
        <mrna_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGAT.....................................................................................................GGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAG.......................................................................................ACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAG.............................................................................GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG...........................................................................................................................................................................................................................................................................................................................ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGNAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTA-CTG..............................................................................................................................................................................................................GATGGTCAGGTGCAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333517" ref_strand="+" ref_description="SGN-E333517 [cTOD-20-N8]">
      <seq>aggtgaataaaccatcagttatcttcattgacgaaattgatgcactcgcaaccagacgtcaaggaatatttagtgaatcaactgatcacctctataacgcggcaactcaagaaagggaaactactttaaaccagttgttgatcgagctagatggatttgatactgggaaaggtgttatattcctaggggctacaaatcgaagggatttattagatcccgcccttcttcgtcctggtagatttgatcgcaagataagaattcggcctcccaatgcaaaaggaagattggaaattttgaaagtacatgcacggaaagttaaattatcagatactgttgatttgtctagttatgccccaaatttacctggatggtcaagtgcaaagctggctcagcttctccaggaggctgctctagtagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="100019" stop="102263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100242" g_stop="100243" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100321" g_stop="100373" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="55" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100689" g_stop="100884" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="251" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101588" g_stop="101702" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="366" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101909" g_stop="101963" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="421" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E333517" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100242" e_stop="100243"/>
          <exon e_start="100321" e_stop="100373"/>
          <exon e_start="100689" e_stop="100884"/>
          <exon e_start="101588" e_stop="101702"/>
          <exon e_start="101909" e_stop="101963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAGCATAATACGTAGTCAATGAACCATGTGACTTCCCTTATTATGTTTTGAATAATGCCCTAATTGTTGTCACAGGTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAGGTATGGATATTTGTCTAAATAAGTAATGGTGAACGTGTTTTTTTTTTACTGGTTTAGCTTAGCACAAAGGAAAATCTGGAGCTGAAGCATCTGGGCATTTTTCATCTAAGTAACCCCTTTAGTGGTAGAACTATTGAAATTGGGTTTTAGAACCTGAAGTTACTAATGTCATGTTGTGGACAATGCTAATGTCGTCAGTGTGTAGCTGTCTAGATATTCTTTTTAATCGTAAAGAAATAACTTAGTCATTCATAAATGACATGTAGACACGTGCAGTGGTTATAGTTTCTCAGACTTATTATTCTTAATAAACAGACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAGGTTTGTTCTCCTATTGAATTGAATTCTTTATCAACTCAGCTCCTCATGACTTGAATCACTCTATTCATGTTCTGTCGGTATGTGCGCATTGGTCGGGAGGAGGTAGACAAAATTTTCCATGTTTATAGAACATTCCTATTCATGATGTCTTGACTTACTGATTCTTTCCATAAAGATGTTTCTATATGCTGAATATTTTGATAAAAACTAATCAATCCCCCAAAAAGGTGTTATGATTCCACAACAAACTCTGTAATACAGTATGTTATTTTATGCAATGCCTAGTGTACTGCAAAGTTCCTTTACGAAGTCCTTGGATGGGGCTACTGTATTTGGGCTTTTGAATCCTAATAGGTGCTGTTTATGGGCAAAACATTGTTTGACTTGGAAGGTAGGAATCATTTTTTCGTTTCAGTCGACTTGTTAAATATGTTGAGACGCCGATAGCTTTTGGTAGATTCTATAGAGAATAAGTACCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTAATATAACATCATAAGTATAGTTTATTTGAGATAATGAGTCAGCTTAAGAAGTGTCGAATTACTTATAGTAGCTATGTAATCTTTATTCCTCACTTCTTTCTGGAACACCACATTTCATGCTTGTTACATTTCTCTCTTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGT</genome_strand>
        <mrna_strand>AG.............................................................................GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG...........................................................................................................................................................................................................................................................................................................................ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCCAAATTTACCTG..............................................................................................................................................................................................................GATGGTCAAGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209584" ref_strand="+" ref_description="SGN-E209584 [cLEC-54-I3]">
      <seq>tttcagataagaattcggcctcccaatgcaaaaggaagattggaaattttgaaagtacatgcacggaaagttaaattatcagatactgttgatttgtctagttatgcccaaaatttacctggatggtcaggtgcaaagctggctcagcttctccaggaggctgctctagtagcagtcaggagagggcataactcaattcttcattcagatatggatgatgcagttgatcggcttacagtaggacctagacgagttgggattgagttgggtcatcaggggcagtgtcgtcgagcaattactgaggtggggactgcattgacttctcatcttctgaggcaatatgagaatgcagaagttgagcgttgtgacagaatatctatcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="101282" stop="102472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101582" g_stop="101702" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101909" g_stop="102172" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="385" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E209584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101582" e_stop="101702"/>
          <exon e_start="101909" e_stop="102172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATC</genome_strand>
        <mrna_strand>TTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG..............................................................................................................................................................................................................GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262253" ref_strand="+" ref_description="SGN-E262253 [cLEG-56-E22]">
      <seq>ttgatttgtctagttatgcccaaaatttacctggatggtcaggtgcaaagctggctcagcttctccaggaggctgctctagtagcagtcaggagagggcataactcaattcttcattcagatatggatgatgcagttgatcggcttacagtaggacctagacgagttgggattgagttgggtcatcaggggcagtgtcgtcgagcaattactgaggtggggactgcattgacttctcatcttctgaggcaatatgagaatgcagaagttgagcgttgtgacagaatatctatcaatccgcgtggccagaccttgtctcaagttgtgtttcaccgtcttgatgatgagtcatacatgtttgagcggctaccacggttgcttcatcgtcttcaggtatttcttggagggagagctgctgaagaggtcatttatggacgtgatacttcaagagcatctgtaaactaccttgctgatgcatcctggcttgcccgtaagataatcacaatatggaatatgaaaaacccaatggccatacatggagaacctcccccctgggtaaagagagtgaagtttgtgggtccacgcctggactttggaggatcactatatgatgattatgacttaattgagcccccgatcaactttaatttggatgacgatgttgctaagaagacagaagagctcatatgtgacatgtacgggaagacagtaactcttctgaggcagcatgatactgccttactcaaaacagtgaaggttcttctgaatcggactgagatcangtggagacgagatcgacttaatcctgagccactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="101370" stop="103610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101670" g_stop="101702" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101909" g_stop="102183" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="308" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102184" i_stop="102403" i_length="220">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102404" g_stop="102487" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="392" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102488" i_stop="102582" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102583" g_stop="102695" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="505" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102696" i_stop="102768" i_length="73">
            <donor d_prob="0.483" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102769" g_stop="103018" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="755" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103250" g_stop="103310" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="817" r_length="62" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E262253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101670" e_stop="101702"/>
          <exon e_start="101909" e_stop="102183"/>
          <exon e_start="102404" e_stop="102487"/>
          <exon e_start="102583" e_stop="102695"/>
          <exon e_start="102769" e_stop="103018"/>
          <exon e_start="103250" e_stop="103310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAGGTTTGTTTCTTCTCTAGTTGCTTCATCTTTGAACGTCATCTTTTGCACCTCACTCTTTTTTACTCCCTCCTTTCAACGTCATCTTTTGCACCTCACTCTTTATTACTCCCTCCTTTCCAAATCTAACATGTAGTGATCGTGTCTTGCATACGTTTTTACTGGAGAATTCAACTGAACATTTGTTTCCCATGGTTGCTGAAAATTTAAAAGTGGCATGCAGACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAGGTGCTAATATTTGAAGTCTTATGCTGATTTTTTGCTTGCACTTTTTCTTCCTTCATGCAAAGCTGATGATTGCATTATGTACATCTTTGAACAAGGTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAATGTACGTATTTATTAGTTATGATTTAGTTGGTGTTGCTGTATCTGCCAGAGCCGTGACTTTTTCCTATGAACAGATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAGGTAGTTCTCGACACGTTGAATCAGTTATCTTATAGACTTGTTTTTCGAAATTTTTCATATCCTTAACTTTGCAGTAACTCCGTTGAATAAACTTGATATTTTTAATGCTTCTTTTTAGAAAAGGCTCCACCAGTTGTGCATAGATTAGAAGTTACTTAGGTCCAAATTATTTAGTATAATTTAGTTAAAGCAGATGCAGAGATCATTGATTCCTGTTCATGTTTATCCTAGGTTCTTCTGAATCGGACTGAGATCA-GTGGAGACGAGATCGACTTAATCCTGAGCCACTATC</genome_strand>
        <mrna_strand>TTGATTTGTCTAGTTATGCCCAAAATTTACCTG..............................................................................................................................................................................................................GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAG............................................................................................................................................................................................................................ACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAG...............................................................................................GTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAAT.........................................................................ATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG.......................................................................................................................................................................................................................................GTTCTTCTGAATCGGACTGAGATCANGTGGAGACGAGATCGACTTAATCCTGAGCCACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552546" ref_strand="+" ref_description="SGN-E552546 [cTSB-4-E16]">
      <seq>cgatcaactttaatttggatgacgatgttgctaagaagacagaagagctcatatgtgacatgtacgggaagacagtaactcttctgaggcagcatgatactgccttactcaaaacagtgaaggttcttctgaatcggactgagatcagtggagacgagatcgacttaatcctgagccactatccaccaaatacacccacaagtcttctgctggaggagagagatcccgcgagtcttccatttgttgacgaaaagcaagaacagcataataacattgagtacagtctgtcttcatgagaaaacggaatccttgatccaggctttctaccctattcgaagccagttttgacgtgcattcggaacacgaaatattacagctgagaactttctgacaaatagtgagacgctaaaaatgcagtttgtttgctgtatgaatccatatctataggaattttgttaaaactgttgatttattcttctgtgatttttgtatttcagtatattactattgaagaggcaaaatcttcacaacaaaattaatataagaaaagtagttgaattacactgcnnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="102597" stop="103994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102897" g_stop="103018" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103250" g_stop="103694" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="567" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="590"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E552546" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102897" e_stop="103018"/>
          <exon e_start="103250" e_stop="103694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAGGTAGTTCTCGACACGTTGAATCAGTTATCTTATAGACTTGTTTTTCGAAATTTTTCATATCCTTAACTTTGCAGTAACTCCGTTGAATAAACTTGATATTTTTAATGCTTCTTTTTAGAAAAGGCTCCACCAGTTGTGCATAGATTAGAAGTTACTTAGGTCCAAATTATTTAGTATAATTTAGTTAAAGCAGATGCAGAGATCATTGATTCCTGTTCATGTTTATCCTAGGTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</genome_strand>
        <mrna_strand>CGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG.......................................................................................................................................................................................................................................GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGACGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556055" ref_strand="+" ref_description="SGN-E556055 [cTSD-2-E16]">
      <seq>cgatcaactttaatttggatgacgatgttgctaagaagacagaagagctcatatgtgacatgtacgggaagacagtaactcttctgaggcagcatgatactgccttactcaaaacagtgaaggttcttctgaatcggactgagatcagtggagacgagatcgacttaatcctgagccactatccaccaaatacacccacaagtcttctgctggaggagagagatcccgcgagtcttccatttgttgacgaaaagcaagaacagcataataacattgagtacagtctgtcttcatgagaaaacggaatccttgatccaggctttctaccctattcgaagccagttttgacgtgcattcggaacacgaaatattacagctgagaactttctgacaaatagtgagacgctaaaaatgcagtttgtttgctgtatgaatccatatctataggaattttgttaaaactgttgatttattcttctgtgatttttgtatttcagtatattactattgaagaggcaaaatcttcacaacaaaattaatataagaaaagtagttgaattacactgcagaaaaaaaaaaaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="102597" stop="103997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102897" g_stop="103018" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103250" g_stop="103694" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="567" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="587"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E556055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102897" e_stop="103018"/>
          <exon e_start="103250" e_stop="103694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAGGTAGTTCTCGACACGTTGAATCAGTTATCTTATAGACTTGTTTTTCGAAATTTTTCATATCCTTAACTTTGCAGTAACTCCGTTGAATAAACTTGATATTTTTAATGCTTCTTTTTAGAAAAGGCTCCACCAGTTGTGCATAGATTAGAAGTTACTTAGGTCCAAATTATTTAGTATAATTTAGTTAAAGCAGATGCAGAGATCATTGATTCCTGTTCATGTTTATCCTAGGTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</genome_strand>
        <mrna_strand>CGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG.......................................................................................................................................................................................................................................GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGACGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347985" ref_strand="+" ref_description="SGN-E347985 [cTOF-31-N10]">
      <seq>ctcgtaacatcgtatacaacgatgtagtctccaaacctcagctgtctttgcggctcttcgtttctattttctgtgccattctgcttttctattctatgttcgtttatggatatggagggatttctcttgcctatgctgagactattaccaattatagtgttaaagatatagagttcaacagctccactcaaccacttttagaaagcggagggaagagtagcaaaactgaaatgctattggaactcaacatatcagttaagattaatgattcttgtagtcctacggataacattgcaacccctgagcattcactgcagaaaacaagtgcattggaagatgcagtttcaactattttaggttacaatatgttaatatgccaaatgcagccacaagtagtgcatatccatcggaatgaaggtcgaatactcaatggaagaagtcacttgacctatccaaatctggaagaattcagaagcattacaaaacaagaaaagagagggagcaccgcaaggtcagttagtaaatatcacccacaggcttgagcctggatggtacgccttacaattatggcctcgtcatccaagggtgcctnaagtggtgggcccataataagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="104006" stop="106568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104306" g_stop="104422" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104423" i_stop="105772" i_length="1350">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105773" g_stop="106268" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="617" r_length="500" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E347985" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104306" e_stop="104422"/>
          <exon e_start="105773" e_stop="106268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAGGTAAAATTTCGTATACCCATTTGGGTTTTCTTTCATTATAATGATCTTTTCTAACATGGGTAATTTGAAAAAATAATTAAAATCCACCCAAAAAAGAGATTTTTATGTGAATGCTGATGATCCTTTGTTGCTTTCTTGTTAAGTGTGTTGTTAAATGAACATTTCAGTGTGATTTAGCTCTATTATATGTTTAAAAAGAGTTACTTGGGTATAAGGTGTTTAAAAATTTAGCTAATTTAGATCTAGGAGGAGCTTAGTAGAAAAAAAGATCCTTTGTTGCTCTCTTGGTGACTGTTGTGTTGAATGAATATCTAGTGTGATTCAGTGTTATTGAATGTTTAAAAAGACTTGAGCAGATACTCGAGTCGGGGATCTATAGGCTCTTTACCTCAGAAGGTTGGGTATGGTCTAAGTACATTGTACCTCCTCGAACTCCATTTGTGGGATCAGGGTATGCTGTTGTTCTTGGCACATGATGTTTTAACAAATGTAGCTAAGTTAAGAGATTAGTAGAAAAAAGAACGTTGTAGGCGACTATCCTCTTAGATGAGAATTTAGTGTGATTCAGTGCTATCAAATGCTTAAAAAGATTTACTTGGGCGTAGGCTGTTTACAAATTTAGCTAATATAGCTCCATGAGGAGCTTAGTAGAAAAAAGATCCTTTGTTACTTTCTTGGTGACTGTCATCATGAATGAACATGTAGTGTAAGTCAGTGCTATTAGCTGTTTAAAAAGACTTACTTGGGCTTATGGTGTTTACAAATTTAGCTAGTTTAGTACAAGGAGAAACTTAGTTACAGATGACTTAGTTTTTCTTTTTTCAGTTTTCATTTTTTTATTGCTAGTCATCTTTAAGAAAATCAAGTGAAGTCTTCTAATGCTTGAAGTTTGTTGCTTATGGAGTTAGAAAGTAAGTGAATAAGTATTAAAAAAAATCTGTTTTTATAGATTTATAAACCTTGTAATGTGTAAGAGACAAAGATGATATATGAGATGTATTTATTGGTTTGGCATAAATACCGGGCATGAGTAAGCTTTTCTCTTATTAGATTCAATTTTCCTGTGATGCTTTTAGTAGCTTATACTGTTCTTTTTCTTCCCTCTGATTATCGTGTTGTTTGTTCAAACTATTTCGCTTTTCACGTTTGTTGGTCCTTCAGCTCTCACCCAAATGTCAATTTCTGAAGTTTGAAAACTTGAAGTATCTAATTTATGTTTAAGGGGCTTGAGGCTAGTTTAGTATATGGAGCATAATGTATCTACACAGAGCAAATCGGATAGTGATAATCTTTTAAAGCTCATATATTAGTTTTTTGAATGATATATCGTTCCAATGGAATTTTGTGCAGGGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAA-GTCAGTTAGTAAATATCACCCACAGGCTTGAGCCT-GATGGTACGCCTTACAATTAT-GCCTCGTCATCCAAGGGTG-CTAAAGTGGT-GGCCCATAATAAAGAAGC</genome_strand>
        <mrna_strand>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGGATGGTACGCCTTACAATTATGGCCTCGTCATCCAAGGGTGCCTNAAGTGGTGGGCCCATAAT-AAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338674" ref_strand="+" ref_description="SGN-E338674 [cTOE-15-H14]">
      <seq>tcaatggaagaagtcacttgacctatccaaatctggaagaattcagaagcattacaaaacaagaaaagagagggagcaccgcaagtcagttagtaaatatcacccacaggcttgagcctgatggtaccgccttacaattatgcctcgtcatccaagggtgctaaagtggtggcccataataaagaagcaaaaggagcaaacaacgtactgaacaaggatcatgataagtatctcagaaacccttgttctgtggccgggaaattctttgttattgagtttgcagatgaaactctagttgatgcagtcaaaattgcaaattttgagcattattcatctatgctaaaagaatttgagttatcagggagtttggtatatccaactgagaccgtggaatccactgggaacttttgttgctgaaaatgtcaagcatgctcagtgttttaagctacctgaaccaaaatgggttagataccttgaagctaaatttactcacacattatggctctgaattttattgtactatcagttttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="105782" stop="106912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106082" g_stop="106612" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E338674" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106082" e_stop="106612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTA-CGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGA-CGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATA-CTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCG</genome_strand>
        <mrna_strand>TCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACCGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACCGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATACCTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265258" ref_strand="+" ref_description="SGN-E265258 [cLEI-9-K15]">
      <seq>gcaagtcagttagtaaatatgacccacaggcttgagccggatggtacgccttacaattatgcctcgtcatccaaaggtgctaaagtggtggcccataataaagaagcaaaaggagcaaacaacgtactgaacaaggatcatgataagtatctcagaaacccttgttctgtggccgggaaattctttgttattgagtttgcagatgaaactctagttgatgcagtcaaaattgcaaattttgagcattattcatctatgctaaaagaatttgagttatcagggagtttggtatatccaactgagacgtggaatccactgggaacttttgttgctgaaaatgtcaagcatgctcagtgttttaagcttccttgaaccaaaatgggttagatacttgaagctaaatttactcacacattatggctctgaattttattgtactatcaattttatcgaggtatatggtattgatgccatacagcatatgcttgaggatctcatcgtccatttccccgagtcttctcctgataaaatgggaaattttaacaagactactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="105862" stop="107018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106162" g_stop="106718" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E265258" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106162" e_stop="106718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACC-TGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAGACTACTATGCT</genome_strand>
        <mrna_strand>GCAAGTCAGTTAGTAAATATGACCCACAGGCTTGAGCCGGATGGTACGCCTTACAATTATGCCTCGTCATCCAAAGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTTCCTTGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAATTTTATCGAGGTATATGGTATTGATGCCATACAGCATATGCTTGAGGATCTCATCGTCCATTTCCCCGAGTCTTCTCCTGATAAAATGGGAAATTTTAACAAGACTACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367090" ref_strand="+" ref_description="SGN-E367090 [cLPT-5-G20]">
      <seq>aaaaggagcatacaacgtactgaacaaggatcatgataagtatctcagaaacccttgttctgtggccgggaaattctttgttattgagtttgcagatgaaactctagttgatgcagtcaaaattgcaaattttgagcattattcatctatgctaaaagaatttgagttatcagggagtttggtatatccaactgagacgtggaatccactgggaacttttgttgctgaaaatgtcaagcatgctcagtgttttaagctacctgaaccaaaatggattagatacttgaagctaaatttactcacacattatggttctgaattttattgtactatcagttttatcgaggtatatggtattgatgccatagagcagatgcttgaggatctcatcgtccattcccccgagtcttctcctgataaaatgggaaatcttaacaaaactactatgctgtctatgataccagattcaggttctgactaccatgaaacaaaggatgtcgtccaaaatgtggttgagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="105969" stop="107090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106269" g_stop="106790" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E367090" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106269" e_stop="106790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAGACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</genome_strand>
        <mrna_strand>AAAAGGAGCATACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGATTAGATACTTGAAGCTAAATTTACTCACACATTATGGTTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAAACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268026" ref_strand="+" ref_description="SGN-E268026 [cLEI-15-B11]">
      <seq>ttttttcaaacccaaaaaatgtcaaatcattaatacctttacctacaatatagagaacttacggatgataattctacatataaaagtgtgtaagaggagatcagtagtaacacattcacattaaattctaacttctctatccttcatattaaagatctactagacctaaaaggccacctaatgccttcatgtgatagtgacaggaagactctgtactacataaaaagattactgaagcttacaccctattgttagaactgaaaaagttgatatgaaggaataaacttacattctttaataggagaagtctttcaatattccaataaagtaataggtagaaataataggagtattcaacttttaaagtatagaaaagatatcacttttctctgttagactatgactatgagtacttgatcctttctcaccctaagatggagttaatcgtgtaatctttaggtggtatatgtatacaacgtgtgaaatgcactgagcttctaactttaaagttgttatctttaatgtctgatgctttcggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="111523" stop="110382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111227" g_stop="110685" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E268026" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111227" e_stop="110685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCAAACCCAAAAAATGTCAAATTATTAATACTTTTACCTACAATATATAGAACTTACGGATTATAATTCTACATATAAAAGTGTGTAAGAGGAGATCCGTAGTAACACATCCACGTAAAATTCTAACTTCTCTATCCTTCAGATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCTTTCATGTAATAGTTACAGGAAGACTCCGTACTACATAAAAAGATTAGTGAGGTTTACACCCTATTGTTAGAACTGAAAAATGTTGATATGAAGGAATAAAATTACATTCTTTAATAGGAGAAGTCTTCCAATATTCCGATGAAGTAATACGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTGATCGTGTAAAAATCTTTAGATGGTATATGTATACAACTTGTGAAATGCAGTGAGCTTCTAACTGTAAAGTTGTTATCTTTAATGTCTGATGCTTTCTGT</genome_strand>
        <mrna_strand>TTTTTTCAAACCCAAAAAATGTCAAATCATTAATACCTTTACCTACAATATAGAGAACTTACGGATGATAATTCTACATATAAAAGTGTGTAAGAGGAGATCAGTAGTAACACATTCACATTAAATTCTAACTTCTCTATCCTTCATATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCCTTCATGTGATAGTGACAGGAAGACTCTGTACTACATAAAAAGATTACTGAAGCTTACACCCTATTGTTAGAACTGAAAAA-GTTGATATGAAGGAATAAACTTACATTCTTTAATAGGAGAAGTCTTTCAATATTCCAATAAAGTAATAGGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTAATCGTGT---AATCTTTAGGTGGTATATGTATACAACGTGTGAAATGCACTGAGCTTCTAACTTTAAAGTTGTTATCTTTAATGTCTGATGCTTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719926" ref_strand="+" ref_description="SGN-E719926 [FC09BB01]">
      <seq>gggcgattggcggccaatcggccgaattgaactccagtaatacacatagggtttcaaaattgaattctccgaaaccctaatcggtcttttatgaacgtcgacgacgagtttttcatgacttatgaatggatattagttttttctccggcgccgtcacgttaatctgttgttttttcgccgtcgctgccgcttgtttgactcaccgatcaaaatcggtgcggacgaagggcggagaggattcctgcaactgtgcttgttcgcatggtagttgtggaggaggacgttttgataagacttcggttttgaacggagggagtagtggtagtagtgtttttggtggttttgaggaagaaatggttgagaaagtgtctgtgacagtggctgcggagaaactgacaggggcgtcgatgatggagcagcttgttcctgaaattacgacgcatgcgttgagctatttggattatccgagtctttgtaggctttcgatgacgaattcgcttatgaggaaggctgcaaatgatgataatgcatggaaagctctctatcacaaggatttcacattggagcaggattctctgtctccaattaatggatggaaggcttactatgcagctacaagagccattatgaatgtcaatgctgatttttttaatattattagagagagatcagttccagctatggaacgtttttggctcaatgcagattacgtgaagtgttttcatgcctctggagagtgctttacgggtcacaatgcagtcattggtagctggcaactggcttttaactgggagcagaatgttgattttgaaattagagacgtgaaggcaagagtgatgacagattcggcttgggtgactatgaaagcttatcttaatatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="116635" stop="123084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116939" g_stop="117460" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="551" r_length="522" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117461" i_stop="120178" i_length="2718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120179" g_stop="120375" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="748" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273">
            <donor d_prob="0.068" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122649" g_stop="122784" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="884" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E719926" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116939" e_stop="117460"/>
          <exon e_start="120179" e_stop="120375"/>
          <exon e_start="122649" e_stop="122784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAATACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAGGTATGCCTCTAAAAGTTACATGAAGATGTAGTTTTTTTTTCAATTATTAGTGCTATCTGCATTCCATATAACATATCAATTGTATTTGACTGGATATGCTTAAAATGTTATATTTAGATTATATACTAGTGTTGTATTAGTGATAGTGGAAGAAAATTATTAATACGACAGTTAATAGTTAATAAATGTTAAATGAAAGTTGAATAGCTAGCTTAATAGAGTGAAAACCCGAGGGAAAGACTTAGATAGTCCTTTTAAATATGGATATAGTGGTATCTTTTGTTTATGTATACTACTAAATGTAAAACATCCTCTTAACGGAGTTACAAAAACTAACGGAAAAAGCCTAAAGTCTACAACGGCAATGGTTAAAGTAAACAAAAGAACCACCGATGTAAGAGAAGTTGTGTTTGCAGTCCATAATGAAGAATTACTGCTACCAAAACTCACCTTTCAGAAAATTCATTAAATGTAAAAGGCCAAAATGCATAACAAATTTGGGATTCTAATGAAAGGTCCCACTTCTTGGATTACATAAATGTCAAACTAATTCTCGGAGGTTAAAGATTTAACCTTTAATTTTTTCCCCAAATCTTTTGCACTTATAAATGAAGAAAAACATAAAACATAAAAGGGTTAAAAAAAAAAAGTAAATAATTTAGAACTCCACACTTACAGGTATCTCCTCTTCCGCCATTTTCTCAGAAAATCCCCAGAAGAAGAAGAAAAATCTATTGCAGAAATTATCATTTGAACATTAGGCATAATATTATTCTTGAAATTTGTAAGAACAAAAAGATACCATTCTCTCTTCTCATAATCAAATTTCCGTTTACGTCTTCCGCATTGCCACTCGTAATCAATATGAAAACATAGATGTCACCATGAAAAAACAACAAACAGCAGAAAAACCTAACAACCTGTTTTTTGCTAGTTTTAGCAACTCTGTTTAGAGGGAGACCAAAACTGACCTTCAAGATTTGTGTGCGCATTTAAGGGGACATGGGAATGTGGTTGTGAGGATTGGGTTTAAACTTCTCCTAGGAGGAAGGGCATTAAGTTTGACTTTTAGGAAGCCCTATCATCCTGTTTCCTGCTAATTTCCAATATTGCAAATGTTTCCTTTTACTTATAGATGAATAATCAGCTTTTATGGTACTCCGCGTCTTCCATCAGTCTAGAGAATACGGGTCTCTCAAGGGGTCGGGAACACTGTTAGCTGGATTCCAAATCAAAGAATGCAGACATGGGAACTAAATAGATAGCTTGGGGCACGGGAGCTTCCCTTAAGAGAAGCGTTCATTCATATGGCAGATGCATCAAAAGATTTTTTGAGCCTAGTGCACCTATAATTGTTATTATTATATATATTATTATTATTATTATTTTATATGAAAAAGTAGCTTAGTACAGGATCAACAGGTGCCATCTGTTTAGTCCTTTTTGTTGTCTCAAGAACACTGAAGCTATGATTCATCCATCATTGTCTTTTATTATGGGCTAAATGTTTTACTTTCTCCTTCCCAACAATACGGAATTTTGAAGTAAAAAACTGCTTAAAGTTAATACTCTGAAGTTTAAGTGTTAGAATTGCTAAATAGTTGTGCCAAATTAAGGATGTAACGCTTATTTCATGCATCACATATTAGTCAGTTCTTCCTACCGGCATTTTGTATGCTTAGAATTCGGGGTGCATACCCTCTGGTATACCATGTACCCCAAATTGAACACTCCTCTTCTATATGGCATACCTACCATGTAGAAATTTTAAAAATACACTCTTTTTCATAAGCAAATTAGATGCACCAGACTCCAGAGAGGGGAATTTCATGGTAACCAATCACAAGAGTGGGTTGGGGAGATTCCGTGGTATATACGGAGTACAGTAGAGTCGCTCCAAAGAGTGCTTAACAAGTGGACACTGCACATTGACAATCAATATAAGGGAAACATATTCAACAAGTATACAAAGAGCTCAACATTCAATACTCAGTGTTAACTGCACGTGAAGGGTATAGAAGGACAGTAAACTCCAGTGTTTCTTTGTGATACACATGTATAAAATATGTGAAAGAGCTCAACCTTTTTGATAAAGATGTTATAGAGCTTTCCCTTTGTCAAAAGTGAACATTAATAGAGCTATTTGTCCACAGGAATAACACGGAAATTTTCCTTGGGGGTGGCGTAGTAGTGTGGACATGAGAGTATCAACTTGGAAATTCTAAATCAGAGTCCCAGCCTATCTGCTCCAGCCTTGGTGAGCAGGATTACGTTGTGAACCTTTGCTTGTGGGATACCTTGGCAAGATTAGTCAAGGTGTGTTCTAGTCAAGAAGAACAACAACACCACAATCAAAAAGAAATATGAGAATTGTTTTACTTCTGTTTGCTACATCATTTTTTAATTGATTTTGATTTGCTTGGAAACTGGGAGGAAAGAAACAGAAGCTGAAAGGAGTTTACCACATAAAAGTATACCTTGTAGAATGCCCTTTCTGTATCAGACAAGTATGTCTATCAGCTAATGATGTGTATTTTAGATCAACGATTCTGAGCCCCAATATTTTTCCATCTTCAGGAAAAATAAAAGGTGCAACAATCCCTCTTACTTTTCTTTGTGGACCATGTACTTTCTTGTTCTACATGCATTTTGGATGTTGCATACATGACTTGAAATGTCTGTGTAGTGATTGCCTTTTGTTTTCTCCTCATCTCTTAGGATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGGGTATGAGTTTTTCCATCCTCCATGGGGGATCATCTTTTGAGCTTTTCTACTCTATATCTTTGCACCTTGCATGTCTGTCGTCTTGTTCTCCCTTTCAAACCTCTATTTTTTTTTGTGATTAAATTCTCTATAATATTTTCATATGACAAACTTGTGATGCCCCCCCACCGCCACCCCCACCCCCGGAACAACCAAGTCTCTCGACTTTGGTTCCTCTGGGCATTGCGTCTTTTGTTGTCCACTTTTAGGAGGTTTTTGTATGGTCTTTTTCTTTTTTATTTGCATAAAGGTTGAGTTCTTGTTGGTTAGTTTGGCTGGAAACCTACTTTTACATATCTTATCAAAATTTCTACTTCTATATATTTGAAAAAAAAGAGAACATACCCCTCCTCCTAGGGTATAAATAAATGCACTGAATTAGCTTCAAACTTATTGTGTTATTTTTTTTTGAGTACAACAAATCCCCCCCCCCCCCACCCCCCCGCTGAACTTGGCGCTAAAACTTACTGAAGTACTTGACAATTTTGAAGTGATTAAATGTCACCCTAAGAGATGCAAAGTAAGTAAAAGCACGTGAAATAGTTTTTTTAAAAAATTGAATGGTTTATATCATACACATGACCTTTTTTTATTGGCCAAAATTTAACTAATAGTTTTAAATTTTTCTATAAGTTAATTTATTAATAAATGTGAAATTTCTTGTTTAAAGGTAAATGAAATTTGTGGGTTCAATTTTTTTTAAGAAAATAAATAATCATTTTGTTTTCTCTTTATTTTGTTGTCTTCCCCATTTAAGCACTTCTTATACCTTTCTTCTTCCATATAAGTCATTTTTCCAACAAGTTCATCTCTCACCTCACTAGTCATTCATCAATCCACAAAACCCAACATCTAATTGAAAGTAAATTCCTTGAATTTTAAGTGACCCATTTTGAATTCTATATGAAAAAAAGTGGGTCTATCAACTTTCTTATAGAACCTTCTTTTTTCATTTGAGTTGTTAAAAAAAATACTTTCAAAAAATATCATTCTCCAATGATAGATTTGTAGGAGAGGGTTCGAAGAAGAAAAAGTATAAATGCACTTTTTTTTTAAAAAAAAAATGATGAATGTTGAAGAAAAGAACAAATATTGAAGGCCGAAAGTGGTTGGGAAAAAAGAAGAAGCCAATGAAGGCTGAAAATGGTGAAAAGAAAAGGGGGGGGGGGGCAGTGGAGTGGAAGAAGGGGGGGTAATTTTGATTTTAAAATGCATTTTAAATTTATTGATAAGTGTAATGTATTTTAAAAAATGTTTAAAAAAAGGGTGAATAAGAAAAAAAAAGACTAAAAATTAATGATGTAGTGCTCACATGGTAGTGACGTGGCGCTTACATGGCTATGATGTGGCAGGTGAGAATGGTATTCACTTCAAAGATGTTAAGGGGGGTATTTTATCACCTGTGCAGTTTAAGTGCTAAAGTAAGTTGTGTTGCCAAGTTTAGGGGGATTTGATGTATTTTCTCGTTCTTTTTTCATATTTGTTTTTGTGTGTAGCTTCTATCTATGTTGTTGGTGTGAGGGTTTCCATATGTTTTATATCATTAAGGTCTTGGATAGATGCTTGGATTCTTGCACATGGTAATTTGAGTCAAACTTAGTGAGCCTGATACCACAATTTTTCTTTACTTGTATTTAGGCTTCTTTCCCACAATTAGTCCTCAATACCATTAACTTTGTTTTAGCCAGTCTTTGCGTGTTGATCCTTCTCGTTCTATCCCAAGCACGCTCTTCCACCCATTAGTTAACCTACTCTTGAGGCTCATTCTTCAGCTTGTCAAGCTACTTCAATTTTGTAAAAAGAATAAGAAGACAAGGTGAAAAAGAACTGTCCAAACACACATCTAACCCTGCAATTGGATTAGCCATACGGGAGGGTATTAGAAAATATATCTGCCTGATGCCTTTCTGTTCCCCTCCCCCCCCCCCTCTAATTAGCTTGTTCTAATTTGATATTGGTTTGTTCTACTAAGATGCTACCGTCATCATAGCAATTGCAAAGTCTTTAAGTATTGGCAGCTCTCTCTAATGCAAGTTCACTAGAGTAATTGAATGTTTTTTTGTGACATGTTTACTTCCCATGTCCTTGTATCGTCCAACGCGTCTAGAATTTATTCGCCAATGCAGTTATAATGCAATTTACTGACTAGTATGTTTTAGCGTGAGACATATTTCATTTTTATGTGTTTACATATCGTTGAACACACATGTTGAGTTGCGTATCTGGCAATGCAGTCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGA</genome_strand>
        <mrna_strand>AACTCCAGTAATACACATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270460" ref_strand="+" ref_description="SGN-E270460 [cLEM-1-B6]">
      <seq>acaaatagggtttcaaaattgaattctccgaaaccctaatcggtcttttatgaacgtcgacgacgagtttttcatgacttatgaatggatattagttttttctccggcgccgtcacgttaatctgttgttttttcgccgtcgctgccgcttgtttgactcaccgatcaaaatcggtgcggacgaagggcggagaggattcctgcaactgtgcttgttcgcatggtagttgtggaggaggacgttttgataagacttcggttttgaacggagggagtagtggtagtagtgtttttggtggttttgaggaagaaatggttgagaaagtgtctgtgacagtggctgcggagaaactgacaggggcgtcgatgatggagcagcttgttcctgaaattacgacgcatgcgttgagctatttggattatccgagtctttgtaggctttcgatgacgaattcgcttatgaggaaggctgcaaatgatgataatgcatggaaagctctctatcacaaggatttcacattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="116651" stop="117769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116951" g_stop="117460" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E270460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116951" e_stop="117460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG</genome_strand>
        <mrna_strand>ACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370559" ref_strand="+" ref_description="SGN-E370559 [TUS-27-E16]">
      <seq>acaaatagggtttcaaaattgaattctccgaaaccctaatcggtcttttatgaacgtcgacgacgagtttttcatgacttatgaatggatattagttttttctccggcgccgtcacgttaatctgttgttttttcgccgtcgctgccgcttgtttgactcaccgatcaaaatcggtgcggacgaagggcggagaggattcctgcaactgtgcttgttcgcatggtagttgtggaggaggacgttttgataagacttcggttttgaacggagggagtagtggtagtagtgtttttggtggtttagaggaaaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="116651" stop="117568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116951" g_stop="117268" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E370559" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116951" e_stop="117268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTT</genome_strand>
        <mrna_strand>ACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTAGAGGAAAAAAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252754" ref_strand="+" ref_description="SGN-E252754 [cLEG-16-L23]">
      <seq>attgaattctccgaaaccctaatcggtcttttatgaacgtcgacgacgagtttttcatgacttatgaatggatattagttttttctccggcgccgtcacgttaatctgttgttttttcgccgtcgctgccgcttgtttgactcaccgatcaaaatcggtgcggacgaagcggaaggctgcaactgtgcttgttcgcatggtagttgtggaggaggacgttttgataagacttcggttttgaacggagggagtagtggtagtagtgtttttggtggttttgaggaagaaatggttgagaaagtgtctgtgacagtggctgcggagaaactgacaggggcgtcgatgatggagcagcttgttcctgaaattacgacgcatgcgttgagctatttggatatccgagtctttgtaggctttcgatgacgaattcgcttatgaggaaggctgcaaatgatgataatgcatggaaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="116668" stop="117749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116968" g_stop="117449" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E252754" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116968" e_stop="117449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTC</genome_strand>
        <mrna_strand>ATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAA--GCGGA-AGG----CTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGA-TATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370558" ref_strand="+" ref_description="SGN-E370558 [TUS-27-E16](-)">
      <seq>aaggatttcacattggagcaggattctctgtctccaattaatggatggaaggcttactatgcagctacaagagccattatgaatgtcaatgctgatttttttaatattattagagaaagatcagttccagctatggaacgtttttggctcaatgcagattacgtgaagtgttttcatgcctttggagagtgctttacgggtcccaatgcagtcattggtagctggcaactggcttttaactgggagcagaatgttgattttgaaattaaagacgtgaaggcaagagtgatgacagattcggcttgggtgactatgaaagcttattttaatatgggatcagggaccgtgactaacgggtttgaactccataatgggagatgggacatggtccatcatccctggtcagtgatggtcattcatggaggtgctgggcaacaagctgtgcagggataggattaaaaaagacaaactgtgaaaaagattgattatttttttgaaaattggaaagtggtatagagatcgtttatagtaaaattgacttccccgggaatttccataaaattatttttatgtagttcctgcttcctttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="119877" stop="131039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120047" g_stop="120049" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120050" i_stop="120178" i_length="129">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120179" g_stop="120375" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="200" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273">
            <donor d_prob="0.068" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122649" g_stop="123041" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="593" r_length="393" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123042" i_stop="123308" i_length="267">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123309" g_stop="123332" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="617" r_length="24" r_score="0.625"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123333" i_stop="123743" i_length="411">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123744" g_stop="123752" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="626" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E370558" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120047" e_stop="120049"/>
          <exon e_start="120179" e_stop="120375"/>
          <exon e_start="122649" e_stop="123041"/>
          <exon e_start="123309" e_stop="123332"/>
          <exon e_start="123744" e_stop="123752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGCAACAATCCCTCTTACTTTTCTTTGTGGACCATGTACTTTCTTGTTCTACATGCATTTTGGATGTTGCATACATGACTTGAAATGTCTGTGTAGTGATTGCCTTTTGTTTTCTCCTCATCTCTTAGGATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGGGTATGAGTTTTTCCATCCTCCATGGGGGATCATCTTTTGAGCTTTTCTACTCTATATCTTTGCACCTTGCATGTCTGTCGTCTTGTTCTCCCTTTCAAACCTCTATTTTTTTTTGTGATTAAATTCTCTATAATATTTTCATATGACAAACTTGTGATGCCCCCCCACCGCCACCCCCACCCCCGGAACAACCAAGTCTCTCGACTTTGGTTCCTCTGGGCATTGCGTCTTTTGTTGTCCACTTTTAGGAGGTTTTTGTATGGTCTTTTTCTTTTTTATTTGCATAAAGGTTGAGTTCTTGTTGGTTAGTTTGGCTGGAAACCTACTTTTACATATCTTATCAAAATTTCTACTTCTATATATTTGAAAAAAAAGAGAACATACCCCTCCTCCTAGGGTATAAATAAATGCACTGAATTAGCTTCAAACTTATTGTGTTATTTTTTTTTGAGTACAACAAATCCCCCCCCCCCCCACCCCCCCGCTGAACTTGGCGCTAAAACTTACTGAAGTACTTGACAATTTTGAAGTGATTAAATGTCACCCTAAGAGATGCAAAGTAAGTAAAAGCACGTGAAATAGTTTTTTTAAAAAATTGAATGGTTTATATCATACACATGACCTTTTTTTATTGGCCAAAATTTAACTAATAGTTTTAAATTTTTCTATAAGTTAATTTATTAATAAATGTGAAATTTCTTGTTTAAAGGTAAATGAAATTTGTGGGTTCAATTTTTTTTAAGAAAATAAATAATCATTTTGTTTTCTCTTTATTTTGTTGTCTTCCCCATTTAAGCACTTCTTATACCTTTCTTCTTCCATATAAGTCATTTTTCCAACAAGTTCATCTCTCACCTCACTAGTCATTCATCAATCCACAAAACCCAACATCTAATTGAAAGTAAATTCCTTGAATTTTAAGTGACCCATTTTGAATTCTATATGAAAAAAAGTGGGTCTATCAACTTTCTTATAGAACCTTCTTTTTTCATTTGAGTTGTTAAAAAAAATACTTTCAAAAAATATCATTCTCCAATGATAGATTTGTAGGAGAGGGTTCGAAGAAGAAAAAGTATAAATGCACTTTTTTTTTAAAAAAAAAATGATGAATGTTGAAGAAAAGAACAAATATTGAAGGCCGAAAGTGGTTGGGAAAAAAGAAGAAGCCAATGAAGGCTGAAAATGGTGAAAAGAAAAGGGGGGGGGGGGCAGTGGAGTGGAAGAAGGGGGGGTAATTTTGATTTTAAAATGCATTTTAAATTTATTGATAAGTGTAATGTATTTTAAAAAATGTTTAAAAAAAGGGTGAATAAGAAAAAAAAAGACTAAAAATTAATGATGTAGTGCTCACATGGTAGTGACGTGGCGCTTACATGGCTATGATGTGGCAGGTGAGAATGGTATTCACTTCAAAGATGTTAAGGGGGGTATTTTATCACCTGTGCAGTTTAAGTGCTAAAGTAAGTTGTGTTGCCAAGTTTAGGGGGATTTGATGTATTTTCTCGTTCTTTTTTCATATTTGTTTTTGTGTGTAGCTTCTATCTATGTTGTTGGTGTGAGGGTTTCCATATGTTTTATATCATTAAGGTCTTGGATAGATGCTTGGATTCTTGCACATGGTAATTTGAGTCAAACTTAGTGAGCCTGATACCACAATTTTTCTTTACTTGTATTTAGGCTTCTTTCCCACAATTAGTCCTCAATACCATTAACTTTGTTTTAGCCAGTCTTTGCGTGTTGATCCTTCTCGTTCTATCCCAAGCACGCTCTTCCACCCATTAGTTAACCTACTCTTGAGGCTCATTCTTCAGCTTGTCAAGCTACTTCAATTTTGTAAAAAGAATAAGAAGACAAGGTGAAAAAGAACTGTCCAAACACACATCTAACCCTGCAATTGGATTAGCCATACGGGAGGGTATTAGAAAATATATCTGCCTGATGCCTTTCTGTTCCCCTCCCCCCCCCCCTCTAATTAGCTTGTTCTAATTTGATATTGGTTTGTTCTACTAAGATGCTACCGTCATCATAGCAATTGCAAAGTCTTTAAGTATTGGCAGCTCTCTCTAATGCAAGTTCACTAGAGTAATTGAATGTTTTTTTGTGACATGTTTACTTCCCATGTCCTTGTATCGTCCAACGCGTCTAGAATTTATTCGCCAATGCAGTTATAATGCAATTTACTGACTAGTATGTTTTAGCGTGAGACATATTTCATTTTTATGTGTTTACATATCGTTGAACACACATGTTGAGTTGCGTATCTGGCAATGCAGTCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGATCAGGTACCGTGACTAACGTGTTTGAACTCCATAATGGGAGATGGTACATGGTCCATCATCACTGCTCAGTGATGCTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAGAAGACAAACTGTGAAGAAGATTGATTATTCTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAGAATTGACTTCCCCGGGAATCTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCCATCGTTTGATAGTTAGATATCACTAGTTTCTTGCCATTGAATTTTTGGCTTTGCTAATTTTCTTGGCAATACACATGCACAGTTTGACAAAGTGAAAATGTCCAAAATGTTTTTGGTCTGTCTTGTATCAGAAGGTACGCGTAATCCTATCGTCAAGAGTTCTTGACTATTGCATCAGATAACAGGTTCATCTTCTAAGTATTTTTCCGGATTAACGACCCTAAAGGAGTACCAAAATGAAAACTATATGTCATCTTTAATCTTCACATAAAATACAAAAGTAACTACATAATTTTCTTGTGTAGCAAAGAACGTGGTACAAATGCTATCTTTTCGAACTAATATAATATAGTTGTTTACTGAAAATAAAAAATATATTCCATAGGTCAATTATTATTTCTTTTTTTCAAAAAACAAAATGATTTTTTTTGTTTTCCCTTTTCCTTGGTGTCAAAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAA</genome_strand>
        <mrna_strand>AAG.................................................................................................................................GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAAAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTTTGGAGAGTGCTTTACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAAAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATTTTAATATGGGATCAGGGACCGTGACTAACGGGTTTGAACTCCATAATGGGAGATGGGACATGGTCCATCATCCCTGGTCAGTGATGGTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAAAAGACAAACTGTGAAAAAGATTGATTATTTTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAAAATTGACTTCCCCGGGAATTTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCC...........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706066" ref_strand="+" ref_description="SGN-E706066 [FA28DF08]">
      <seq>aaatgatgtccaataacaaacattatcaccatccataaggttccggggactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaatatactagctatgttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123195" stop="125842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123495" g_stop="123819" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="568" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125542" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="864" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E706066" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123495" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTG</genome_strand>
        <mrna_strand>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAA-TATACTAGCTATGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733108" ref_strand="+" ref_description="SGN-E733108 [LB04AA03]">
      <seq>ccttccataaggttccggggactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123223" stop="125758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123523" g_stop="123819" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="540" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125458" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="753" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="766"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E733108" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123523" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAA</genome_strand>
        <mrna_strand>CCTTCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732014" ref_strand="+" ref_description="SGN-E732014 [LB01AB12]">
      <seq>cagtttccggggactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaattatactagctatgttgttgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123232" stop="125845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123531" g_stop="123819" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="532" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125545" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="832" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="844"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E732014" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123531" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</genome_strand>
        <mrna_strand>CAGTTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733893" ref_strand="+" ref_description="SGN-E733893 [LB11AH10]">
      <seq>cggtgactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123238" stop="125796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123538" g_stop="123819" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="525" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125496" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="776" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E733893" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123538" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGT</genome_strand>
        <mrna_strand>CGGTGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734161" ref_strand="+" ref_description="SGN-E734161 [LB11DG08]">
      <seq>cggtgactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123238" stop="125798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123538" g_stop="123819" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="525" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125494" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="774" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="794"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E734161" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123538" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTT</genome_strand>
        <mrna_strand>CGGTGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732905" ref_strand="+" ref_description="SGN-E732905 [LB03BH01]">
      <seq>ccttaagtggagcagagtggctgagaagatgatcaccgcccccttcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgaccacggagtttaagctaactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123252" stop="125726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123547" g_stop="123819" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="516" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125426" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="698" r_length="182" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E732905" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123547" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCT-ACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGG</genome_strand>
        <mrna_strand>CCTTAAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCCCCTTCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGACCACGGAGTTTAAGCTAACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266021" ref_strand="+" ref_description="SGN-E266021 [cLEI-6-J6]">
      <seq>cacagtgtagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123249" stop="125580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123549" g_stop="123819" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="514" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125280" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="549" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E266021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123549" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCT</genome_strand>
        <mrna_strand>CACAGTGTAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238542" ref_strand="+" ref_description="SGN-E238542 [cLED-17-O12]">
      <seq>acagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaagttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataagttttttggtgataaaaacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123250" stop="125697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123550" g_stop="123819" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="513" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125397" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="665" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E238542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123550" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAA</genome_strand>
        <mrna_strand>ACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAAGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAAGTTTTTTGGTGATAAAAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324281" ref_strand="+" ref_description="SGN-E324281 [cTOC-4-M24]">
      <seq>cgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaaaggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaagccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagaattagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaatagatcgaagagctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123283" stop="125584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123583" g_stop="123819" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="480" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125284" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="519" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E324281" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123583" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACT</genome_strand>
        <mrna_strand>CGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAAGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAAGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAATTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAATAGATCGAAGAGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222515" ref_strand="+" ref_description="SGN-E222515 [cLEL-16-E16](-)">
      <seq>ccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaattatactagctatgttgttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="124207" stop="125845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124507" g_stop="124667" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125246" g_stop="125545" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="461" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="478"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E222515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124507" e_stop="124667"/>
          <exon e_start="125246" e_stop="125545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</genome_strand>
        <mrna_strand>CCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222778" ref_strand="+" ref_description="SGN-E222778 [cLEL-16-E14](-)">
      <seq>gttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaattatactagctatgttgttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="124330" stop="125845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124630" g_stop="124667" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125246" g_stop="125545" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="338" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="355"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E222778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124630" e_stop="124667"/>
          <exon e_start="125246" e_stop="125545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</genome_strand>
        <mrna_strand>GTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705994" ref_strand="+" ref_description="SGN-E705994 [FA28CH03]">
      <seq>gtaatcataaaaacctaaatagagcgagtgttttcatctacttccccaattgagcgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggacgacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125674" stop="129467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125974" g_stop="126409" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="542" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="787" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E705994" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125974" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372280" ref_strand="+" ref_description="SGN-E372280 [TUS-30-N15]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactangagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="129447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129147" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="707" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E372280" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGG</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTANGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291834" ref_strand="+" ref_description="SGN-E291834 [cLET-7-I18]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggacgacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="129336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129036" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="596" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E291834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTC</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287220" ref_strand="+" ref_description="SGN-E287220 [cLES-6-L18]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacnagaatgatgaataagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgaacaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="129316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129016" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="576" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E287220" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGC</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACNAGAATGATGAATAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAACAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371389" ref_strand="+" ref_description="SGN-E371389 [TUS-27-M15]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgactacttctaaagggataagtttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="127453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E371389" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGACTACTTCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372279" ref_strand="+" ref_description="SGN-E372279 [TUS-30-N15](-)">
      <seq>attcccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125732" stop="129467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126031" g_stop="126409" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="485" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="730" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E372279" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126031" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>ATTCCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371388" ref_strand="+" ref_description="SGN-E371388 [TUS-27-M15](-)">
      <seq>attccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaactttcaatggaattgaaagaaacggtacttaatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaataaaaaatttctctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125732" stop="129467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126032" g_stop="126409" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="485" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="730" r_length="245" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E371388" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126032" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAA-GAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>ATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTTCAATGGAATTGAAAGAAACGGTACTTAATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATAAAAAATTTCTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262474" ref_strand="+" ref_description="SGN-E262474 [cLEG-56-B24]">
      <seq>aaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggacgacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125745" stop="129467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126045" g_stop="126409" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="471" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129169" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="712" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E262474" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126045" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATT</genome_strand>
        <mrna_strand>AAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354808" ref_strand="+" ref_description="SGN-E354808 [cTOS-19-I14]">
      <seq>gacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaatttgaggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="126083" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126383" g_stop="126409" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="133" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="378" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E354808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126383" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>GACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389875" ref_strand="+" ref_description="SGN-E389875 [TUS-4-K17]">
      <seq>tttttctatttgttttctgatatttttatatataagaagaaattacagtattattttaatataacataagcaaaagaagggaaaatcagttgagaatgttgcttaggaaactttattgtcatattttcattatgaaaaagagaaaaaacatttctctttatatcaaaattcaaaagttccatccacaattagagttacattacttttcaattcattttatttcctcatggttaaggataattgatgaagagtaacaatgataacatatatatgccacgtgtcctcttaagatccattcatccaaaatcttgtctaaattcttaattggttgtctaaataccaattggcaataccaaacaccacatatatcatttttaaaataccaaactactatccatatgtactcctcctaagttagttccatagcataacttagaaaaaacttcaaaaaaaaaaaaaaaacatatttctttgaaattcaaagaaaattttttcaagtaggggttgggcctcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="129975" stop="131092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130275" g_stop="130792" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E389875" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130275" e_stop="130792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTC-AAAAAAAAAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAA</genome_strand>
        <mrna_strand>TTTTTCTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAACATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTCAAAAAAAAAAAAAAAACATATTTCTTTGAAATTCAAAGAAAATTTTTTCAAGTAGGGGTTGGGCCTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389617" ref_strand="+" ref_description="SGN-E389617 [TUS-4-K17](-)">
      <seq>tttttttatttgttttctgatatttttatatataagaagaaattacagtattattttaatataatataagcaaaagaagggaaaatcagttgagaatgttgcttaggaaactttattgtcatattttcattatgaaaaagagaaaaaacatttctctttatatcaaaattcaaaagttccatccacaattagagttacattacttttcaattcattttatttcctcatggttaaggataattgatgaagagtaacaatgataacatatatatgccacgtgtcctcttaagatccattcatccaaaatcttgtctaaattcttaattggttgtctaaataccaattggcaataccaaacaccacatatatcagtataaaataccaatctcctatccatagatctcctcctaagtagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="129976" stop="130997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130275" g_stop="130688" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E389617" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130275" e_stop="130688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAG</genome_strand>
        <mrna_strand>TTTTTTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCA-GTATAAAATACCAATCTCCTATCCATA-GATCTCCTCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228241" ref_strand="+" ref_description="SGN-E228241 [cLED-2-L11]">
      <seq>ttttttatttgttttctgatatttttatatataagaagaaattacagtattattttaatataatataagcaaaagaagggaaaatcagttgagaatgttgcttaggaaactttattgtcatattttcattatgaaaaagagaaaaaacatttctctttatatcaaaattcaaaagttccatccacaattagagttacattacttttcaattcattttatttcctcatggttaaggataattgatgaagagtaacaatgataacatatatatgccacgtgtcctcttaagatccattcatccaaaatcttgtctaaattcttaattggttgtctaaataccaattggcaataccaaacaccacatatatcatttttaaaataccaaactactatccatatgtactccctcctaagttagttcatagcattacttagaaaaaaccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="129975" stop="131034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130276" g_stop="130734" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E228241" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130276" e_stop="130734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACT-CCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAA-CTTCAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>TTTTTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCCTCCTAAGTTAGTT-CATAGCATTACTTAGAAAAAACCTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730555" ref_strand="+" ref_description="SGN-E730555 [LA24BH12]">
      <seq>caataaaaaaacatatttcattgaaattcaaagtaaattttttcaagtatgggttgtgcctcatcaaagagaataaaggttgccatcgacgtctaccgtcctccgccgacgagcttcgccgtcttcgatatcaactccattgaagaaccatggctcaaaagtgcaaacaacaacaacaaggtagaagaaaatgagttggatcaggacgagctagacgaagatgagaagccaataaaagtagcacaaccaattctagaaaaactcaacacttctattgatgattctccaaaatcatgggatgaagttagcaaagctttagaagatttaaaacccactctacaaaacccaccaccacaaaaatcacctaaaaaacccctccttgccctaccggcgccgcctccgccgccatcagaggcggcggaagacggcgacggttcaccaaaaagaaaaattccaagaaagagtttttcctttcatacccttgaagaacttgaatccaaattatcatcaaaagatgccaaaaagaacaatgaagtgatcaagaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="130426" stop="132471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130725" g_stop="130904" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130905" i_stop="131593" i_length="689">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131594" g_stop="132171" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="758" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E730555" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130725" e_stop="130904"/>
          <exon e_start="131594" e_stop="132171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAGGTATTGTTAGTTTACAACTTATCAACTTTCAAACACAAAAGAGTAGGAGTGATAAACTAATAAGAATTGAACATTGCTCCCTTAATCTCAAATTATTTGTCGTGATTTTTATAAATAGGTGTCTCAAGATATAATTAGTTTTTCGTTTTATCTTTAATAGTTATTATTTTTTAAGACTATAAATAATTCACAAGAATAAATATTTAATGGAAGAGAGATTATTATATCTTAATACTTAAATAAAGGTAAATGGTTCAAAAATCTCTTTAATATTTTTAAAAAATGTGTAAATAAGAAATAAAACAGATAATTTGGAACAGAAGGAGTATTTGTTATTGTAAAGGTTTTGCCTATATTAAGCTTAAAACGTCGCATACAGTACATAACTTTTATATATACATAGATATTCTAGTTAATTTTGTATTGTATTGAATAATCCCTAGAAATTTGATATTTGTTTCATTTCCTAAAAGATATTACTATGTTAAAGCATTTATAAATACAATTGCTGTCCCAAATCAAACGTTAGTGGACTAGAATTTTAAAAAAGAACACTGATTATGTGCGTATGGACTATAGTATGATGTTTTCTTAATTTGAAAGACTATTAATAATTTTATGTATATTTTTAAATTTAATTTATTATCTTGATAATTTAATTTGACATGATATATTTATATTAAAATTAGGTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCC</genome_strand>
        <mrna_strand>CAATAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727523" ref_strand="+" ref_description="SGN-E727523 [LA14DG10]">
      <seq>cgaataaggtagaagaaaatgagttggatcaggacgagctagacgaagatgagaagccaataaaagtagcacaaccaattctagaaaaactcaacacttctattgatgattctccaaaatcatgggatgaagttagcaaagctttagaagatttaaaacccactctacaaaacccaccaccacaaaaatcacctaaaaaacccctccttgccctaccggcgccgcctccgccgccatcagaggcggcggaagacggcgacggttcaccaaaaagaaaaattccaagaaagagtttttcctttcatacccttgaagaacttgaatccaaattatcatcaaaagatgccaaaaagaacaatgaagtgatcaagaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccccgaaaagtgcccgccacgtggcgatgactcattggtcatctacacgacgtcgctaggtggcgtgcgtcgtacgtttgaggattgtaataagttgaggttaattttggaatcccatagggtggttttcgacgagcgtgacgtggcattgcatggcgagtttcgtcaggagctgaaggagttgcttggagatggggaggacgcgggagtaccgcggttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131288" stop="132692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131594" g_stop="132392" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="807" r_length="799" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131594" e_stop="132392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTG</genome_strand>
        <mrna_strand>GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727157" ref_strand="+" ref_description="SGN-E727157 [LA13DF02]">
      <seq>caaaatcatgggacgatgttagcaaagctttagaagatttaaaacccactctacaaaacccaccaccacaaaaatcacctaaaaaacccctccttgccctaccggcgccgcctccgccgccatcagaggcggcggaagacggcgacggttcaccaaaaagaaaaattccaagaaagagtttttcctttcatacccttgaagaacttgaatccaaattatcatcaaaagatgccaaaaagaacaatgaagtgatcaagaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccccgaaaagtgcccgccacgtggcgatgactcattggtcatctacacgacgtcgctaggtggcgtgcgtcgtacgtttgaggattgtaataagttgaggttaattttggaatcccatagggtggttttcgacgagcgtgacgtggcattgcatggcgagtttcgtcaggagctgaaggagttgcttggagatggggaggacgcgggagtaccgcggttgtttgtgaaggggaggtacattggtggagtggaggaagtggtgcacctgaacgagacgaagagactcgggaggatattgaattgcgctagggtggagaggggtctggggaggttangatgtgaagggtgcggaggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131400" stop="132826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131700" g_stop="132526" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727157" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131700" e_stop="132526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCT</genome_strand>
        <mrna_strand>CAAAATCATGGGACGATGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAGACTCGGGAGGATATTGAATTGCGCTAGGGTGGAGAGGGGTCTGGGGAGGTTANGATGTGAAGGGTGCGGAGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727699" ref_strand="+" ref_description="SGN-E727699 [LA15BH12]">
      <seq>atttaaaacccactctacaaaacccaccaccacaaaaatcacctaaaaaacccctccttgccctaccggcgccgcctccgccgccatcagaggcggcggaagacggcgacggttcaccaaaaagaaaaattccaagaaagagtttttcctttcatacccttgaagaacttgaatccaaattatcatcaaaagatgccaaaaagaacaatgaagtgatcaagaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccccgaaaagtgcccgccacgtggcgatgactcattggtcatctacacgacgtcgctaggtggcgtgcgtcgtacgtttgaggattgtaataagttgaggttaattttggaatcccatagggtggttttcgacgagcgtgacgtggcattgcatggcgagtttcgtcaggagctgaaggagttgcttggagatggggaggacgcgggagtaccgcggttgtttgtgaaggggaggtacattggtggagtggaggaagtggtgcacctgaacgagacgaagaaactcgggaggatattgaattgggctanggtggagaggggtctggggaggttangatgtgaagggtgcggaagtgctaggtttgtgccatgttttgattgtggagggagttgccaagttgtgaatggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131436" stop="132880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131736" g_stop="132580" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E727699" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131736" e_stop="132580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGAT</genome_strand>
        <mrna_strand>ATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTANGGTGGAGAGGGGTCTGGGGAGGTTANGATGTGAAGGGTGCGGAAGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCCAAGTTGTGAATGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734854" ref_strand="+" ref_description="SGN-E734854 [LB13DB02]">
      <seq>agaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccccgaaaagtgcccgccacgtggcgatgactcattggtcatctacacgacgtcgctaggtggcgtgcgtcgtacgtttgaggattgtaataagttgaggttaattttggaatcccatagggtggttttcgacgagcgtgacgtggcattgcatggcgagtttcgtcaggagctgaaggagttgcttggagatggggaggacgcgggagtaccgcggttgtttgtgaaggggaggtacattggtggagtggaggaagtggtgcacctgaacgagacgaagaaactcgggaggatattgaattgggctagggtggagaggggtctggggaggttaggatgtgaagggtgcggaggtgctaggtttgtgccatgttttgattgtggagggagttgcaaagttgtgaatggggatgttaaggagagatgtcctaagtgtaatgagaatggtttgattcattgccctatttgcaattgaataattgttatgtattattgtacgcatacattaaatcaatgaatacatagtgatgttgttactttgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="131655" stop="133013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131955" g_stop="132713" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E734854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131955" e_stop="132713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</genome_strand>
        <mrna_strand>AGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="136007" stop="136928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136307" g_stop="136628" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136307" e_stop="136628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGTCTTTTTCTCTGCAATATTTAAAGTAAAATGTTTGTAA-TTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATATACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="136007" stop="136910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136307" g_stop="136600" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136307" e_stop="136600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGTCTTTTTCTCTGCAATATTTAAAGTAAAATGTTTGTAA-TTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="136007" stop="136757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136307" g_stop="136457" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136307" e_stop="136457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="136008" stop="137052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136308" g_stop="136752" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136308" e_stop="136752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGTCTTTTTCTCTGCAATATTTAAAGTAAAATGTTTGTAA-TTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATATACTTCTGTGTATAAAGCGAGAGAGGCGA--GA-ATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGGCAAATTTTTTCCAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372364" ref_strand="+" ref_description="SGN-E372364 [TUS-30-N17](-)">
      <seq>caacccatcagcttcacggagtttttgaggctgcaagctttggtgggtcaaatattgatccatcggcctgggaggacaaaaaaaaccctggtgaatttcgctttcctgctcaggttcgtgtcgtgacaaggaaagtttgtgaaccacttgaaaaggattcattcaggccagtccttccccattacgatggccctaaattccgccttgagctaaatgttccaaaggctattttttttttaaacatttttgaaaaaaacaaaaaataaatgaatgtttttgtatttcaagcaaagaatgggcaatatacccttataaaggaaaaaaaaaaaagttgattaaaaaaaaaaagtttgcttttagtaatactgaaaaaagtttgcaaagcaaaaaaaaaaaaactatttattgtatataaatatatacataaatgcagaatataattatttggaaaaacactttttgtgtggaaacaaaaatattattatatttactatattgtgtaatccagcaggaatttgctgtataataataagtgaaatatgagtaaaaaacaagttatatttatgttatggatcataatgtttggttattaatagctattgtttcctttttgcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140561" stop="56893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140561" g_stop="140483" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="113" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140482" i_stop="140047" i_length="436">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140046" g_stop="139936" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="224" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87">
            <donor d_prob="0.494" d_score="0.96"/>
            <acceptor a_prob="0.915" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139848" g_stop="139459" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="614" r_length="390" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139458" i_stop="139240" i_length="219">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139239" g_stop="139217" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="637" r_length="23" r_score="0.826"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736">
            <donor d_prob="0.518" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136480" g_stop="136464" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="654" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E372364" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140561" e_stop="140483"/>
          <exon e_start="140046" e_stop="139936"/>
          <exon e_start="139848" e_stop="139459"/>
          <exon e_start="139239" e_stop="139217"/>
          <exon e_start="136480" e_stop="136464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGGTGGGTCAAATATTGATCCATCGGCCTGGGAGGACAAGAAGAACCCTGGTGAATCTCGCTTTCCTGCTCAGGTAAGGAAGTTCCACATATTATTTCTTTTTCATTTGAACACATTATCGTTTAGTTGGGCGTATTTGTTATAATCATTTTGTACGATATTGGTTTTGAGAGTGTGAGCTTAAGTGGAGCAACATGGTCGGCGAGGATTCATATTAGCCTATCCAACTTGCTTAGGATTTAGATACAGTTGTCATGGTAGTATTTGGATTGTCATCGGAAGTTGATTAGTATGACTAGCCTACCAATCTTTGCGTCGTTTTGATACCTGACTAAAGTTATAGTGTGTACTTGGTTCAACTTGTAAATGAATTACAATGAATCTAAATCGGAACCTGTCGCAGACATAATGAACTAATTAAAGCTCTTATACGAGATGGTCACATATTTTGACAAAATGCCTAAAGTTGTTTTCGTTGAATCTCGACTCATCTCTTCTTTGATTTCCAGGTTCGTGTCGTGACAAGGAAAGTCTGTGAACCACTTGAAGAGGATTCATTCAGGCCAGTCCTTCACCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAGAGGTAATCAATGTCTCCATCGATTGGTTCCATCGTCTAAACAAGAAACAAACGAAATCCTTTGCTTAACATGAGTGTGTCTTCTTGCAGGCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCTATCTAGAATGCCTTATGTTTTTGATTTTTCACTTATCTTCTGTTTGTATTGGGTGGCGATGGTGCCTTTTATGCAAGATTTTTTCATACTTGTATTGAAAATCGACTGATTTTGGTTTGTATAGGGCCTCATGATTTTTTCATATACAAGCATAGGGTTTATTGTTTTGAGAGATTTAGGGTGTGTTTGGTATGAAGAAAAATCGAAAATCCTGTTTTTTAGAAAGAAAAAAAAAAGAGGTTTCTTTACTTATTTTTTCGTATTTGAATTTAGATTTGTAATATAATTAAAATATTATGAGAAATGGAGATGTATTATTATCCGTGGAAAGTACATAAAGTACGTTTCTAAGATTTCGATCAGGAAGAAAAAAAAATTTTTTTTTTGGGTAGATGATGATTATGTGAAAACAACGATTATTTGAACTCAAACATTAATAGTCACAAGATTGGCTGCAAGAAATTGTCAACATAGTAAAGGATCTATTGTTTCAAAGAAATTACATGAAAAAATTAATGTATTTGGTTGTGGAATAATTGAACAAAAAGTTTGATTATTTCAAATTTAATTATAAACTTGTTGAAATGTCACAACCAAAAGAAAAAAATGGTTCAACTGTTCCTTCACGGCACTTCATTTGCAAAAATTGACCAAGTCTTTGGTGATATAAAATAATATATTTATTTTTATGTGTCAATTCCAAATAAAAGAGACTTTGGTGGTAGTTGACCCTAGCATTTGATTTAAAAGTTTATTCCAAAGAAATTTCTACAATTAGAATTCTTATTAGGTAATTATTACTTTTTTCCTTATGATAATTTAGTAATTTACACATTTTTCTAAGATTAAGTAGATTGGTCGTTTAACAAAACCAATTTAAAGATGAACATGTGAAGTTGATGAGATTTTTCTGTGTACTTTTCTTTTTAATATTATGTATTAATTTTGTGTTTTACTTCGTATATGAATGATTTTTTTTTATTTCTTGTGTTGTAATCTTATTAAAATCTATCAATATGCTCAATATAACTTTTACTAACATTATGTTTGAATCATTGTTATCCATTGTATAGTATTGTATTGTTACTATATCTATAATATTTGTTTCAATTGTTACTTAAAATGTGTTGTATTGTTAAATTTCTTGTTACATAACAATGAAAATTCATAATTTATGGAATAACCAATTTGGTGTGTTCCTATTGTTACTTAATTTCTTTTCTCAATTATATATTTACATAATATTTGAAAATACTATTTTACCTTTAATCTCAATTATTTAAATCAAGTCAAACCTCATACCCTAAAATAATTAGGATATTTTAGTAAATTTATAAATTACAATACATTATGCACGATCAAATCAAACAATTAAAATGTTATTATACAACAAAAAATACAGTCTAACTAAATATTGTATCTTCTATACAATACAGTACAATAAAATACAATACAATATGAAATAATGGGTAACAATGATCCCAACAAAATGCAAAAGAAATTACAAATATAACTAGGAAGACATATGGAACCCACAATAAACAATAACAATAATAACACATTTAATGTAATTTATAAATATGAAATAAAGGAAATTTTTAAATAGATTTTTGACTCAAAATAAAGTTTTCGGAGTTTGGATGGAAAGGAATGAATGGATTGAAAGTGCATATTTCAATAAACTAAAAGTTCCTTTTTTTTATATTTAATTATATATCACAATAACCAATTATATAATATATAAATAATCTAAGGAAAAAATTGTATCATCAAACCAAAAAGAAAATGTTAAAAGTATGTAATTGTTTTGTCGGTGATAAAATTCTAAATTTTTAATTTTTTTTTGAATTACCCTTTGTTAATAAATTGGATATATTGTTCATAACGTGACAAACTTTACAAGTGTCTAGAATGGCCTATTAATTAATGCACTTTAATAGTATTCTTTTATTAATGAAAATGGACCAAGTTCATGTATTTGCCAACACTCACATTGTTGGTATATACTCTAATGTAATTCCTAAAAGATACCTTTTTAATAATCTAATATTTTCAAAAATCAATGGTTTGAGATTTAAATTAGTTGATAACAAGCTTGTTTGTTTTTTAAAAAAATTTTCACTTAAATATTAAACTTTTTGTTAATACATTCGTATCGAAAAAAAGTCGCAAAACTACTTAAAGATTCTCTTTTTAACTTGAGTTGTCTCACATATAATATTATTAATGTCCCTAACTTGAGTGTCCCTATATTTCATCATATGAAGTGTATGTCTCAAGTTAAGATAACTTTGTCTAACGTAAATTAAAAGCAAAAACTTTAAAAAATTACTTATTGCGCTTTTATCACTATTTAAAGTCATTAATACGAATTTATGATTTTTTTTTATATATTATTTCATCCGTTCGGTAATGTTTGTCATGATTTCTATTTTTTAGAGTTAAACTATAAAAACTTTGACTAACATTTTAAGATGCATTTTTTTCATCATATTAATATGAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTATTTTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTTACCTTTAAAAATTAGTCAAATTAACTTTTGATAAGCGTAACAAGACAAATATTTCTGGACGGAGGGAGCAATAAAAGAGAAAAAAATTTAGGGAAAATTGTATAAAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTGGAAAAAATTTGCCAGGCGTCTCTCTCCCAGAAGTCTCGCTCGCCACTCTCCCATTCTCGCCTCTCTCGCTTTATACACAGAAGTATATAATTTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATATAATTACAAACATTTTACTTTAAATATTGCAGAGAAAAAGACCAAAGAA</genome_strand>
        <mrna_strand>AAGCTTTGGTGGGTCAAATATTGATCCATCGGCCTGGGAGGACAAAAAAAACCCTGGTGAATTTCGCTTTCCTGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGTCGTGACAAGGAAAGTTTGTGAACCACTTGAAAAGGATTCATTCAGGCCAGTCCTTCCCCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAAAG.......................................................................................GCTATTTTTTTTTTAAACATTTTTGAAAAAAACAAAAAATAAATGAATGTTTTTGTATTTCAAGCAAAGAATGGGCAATATACCCTTATAAAGGAAAAAAAAAAAAGTTGATTAAAAAAAAAAAGTTTGCTTTTAGTAATACTGAAAAAAGTTTGCAAAGCAAAAAAAAAAAAACTATTTATTGTATATAAATATATACATAAATGCAGAATATAATTATTTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTTTTTGC...........................................................................................................................................................................................................................TTTTAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284870" ref_strand="-" ref_description="SGN-E284870 [cLER-19-B23]">
      <seq>caaatattgatccatcggcctgggaggacaagaagaaccctggtgaatctcgctttcctgctcaggttcgtgtcgtgacaaggaaagtctgtgaaccacttgaagaggattcattcaggccagtccttcaccattacgatggccctaaattccgccttgagctaaatgttccagaggctatttctcttctagacatttttgaagagaacaagaactaaatgaatgttcttgtattacaagcagagaatggtcaatataccattataaaggaagaaaaaaaaagttgattagaaaaaaagagtttgcttctagtaatactgaagagagtttgcagagcagaaaaaaaaaaactatctattgtatatagatatatacataaatgcagaatataattatctggaaaaacactttttgtgtggaaccaaaaatattattatatttactatattgtgtaatccagcaggaatttgctgtataataataagtgaaatatgagtaaaaaacaagttatatttatgttatggatcataatgtttggttattaatagctattgtttcctctttgctctaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140561" stop="56890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140547" g_stop="140483" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140482" i_stop="140047" i_length="436">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140046" g_stop="139936" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="176" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87">
            <donor d_prob="0.494" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139848" g_stop="139456" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="569" r_length="393" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139455" i_stop="139234" i_length="222">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139233" g_stop="139217" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="585" r_length="16" r_score="0.824"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736">
            <donor d_prob="0.518" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136480" g_stop="136469" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="597" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E284870" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284870" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140547" e_stop="140483"/>
          <exon e_start="140046" e_stop="139936"/>
          <exon e_start="139848" e_stop="139456"/>
          <exon e_start="139233" e_stop="139217"/>
          <exon e_start="136480" e_stop="136469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATTGATCCATCGGCCTGGGAGGACAAGAAGAACCCTGGTGAATCTCGCTTTCCTGCTCAGGTAAGGAAGTTCCACATATTATTTCTTTTTCATTTGAACACATTATCGTTTAGTTGGGCGTATTTGTTATAATCATTTTGTACGATATTGGTTTTGAGAGTGTGAGCTTAAGTGGAGCAACATGGTCGGCGAGGATTCATATTAGCCTATCCAACTTGCTTAGGATTTAGATACAGTTGTCATGGTAGTATTTGGATTGTCATCGGAAGTTGATTAGTATGACTAGCCTACCAATCTTTGCGTCGTTTTGATACCTGACTAAAGTTATAGTGTGTACTTGGTTCAACTTGTAAATGAATTACAATGAATCTAAATCGGAACCTGTCGCAGACATAATGAACTAATTAAAGCTCTTATACGAGATGGTCACATATTTTGACAAAATGCCTAAAGTTGTTTTCGTTGAATCTCGACTCATCTCTTCTTTGATTTCCAGGTTCGTGTCGTGACAAGGAAAGTCTGTGAACCACTTGAAGAGGATTCATTCAGGCCAGTCCTTCACCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAGAGGTAATCAATGTCTCCATCGATTGGTTCCATCGTCTAAACAAGAAACAAACGAAATCCTTTGCTTAACATGAGTGTGTCTTCTTGCAGGCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCTATCTAGAATGCCTTATGTTTTTGATTTTTCACTTATCTTCTGTTTGTATTGGGTGGCGATGGTGCCTTTTATGCAAGATTTTTTCATACTTGTATTGAAAATCGACTGATTTTGGTTTGTATAGGGCCTCATGATTTTTTCATATACAAGCATAGGGTTTATTGTTTTGAGAGATTTAGGGTGTGTTTGGTATGAAGAAAAATCGAAAATCCTGTTTTTTAGAAAGAAAAAAAAAAGAGGTTTCTTTACTTATTTTTTCGTATTTGAATTTAGATTTGTAATATAATTAAAATATTATGAGAAATGGAGATGTATTATTATCCGTGGAAAGTACATAAAGTACGTTTCTAAGATTTCGATCAGGAAGAAAAAAAAATTTTTTTTTTGGGTAGATGATGATTATGTGAAAACAACGATTATTTGAACTCAAACATTAATAGTCACAAGATTGGCTGCAAGAAATTGTCAACATAGTAAAGGATCTATTGTTTCAAAGAAATTACATGAAAAAATTAATGTATTTGGTTGTGGAATAATTGAACAAAAAGTTTGATTATTTCAAATTTAATTATAAACTTGTTGAAATGTCACAACCAAAAGAAAAAAATGGTTCAACTGTTCCTTCACGGCACTTCATTTGCAAAAATTGACCAAGTCTTTGGTGATATAAAATAATATATTTATTTTTATGTGTCAATTCCAAATAAAAGAGACTTTGGTGGTAGTTGACCCTAGCATTTGATTTAAAAGTTTATTCCAAAGAAATTTCTACAATTAGAATTCTTATTAGGTAATTATTACTTTTTTCCTTATGATAATTTAGTAATTTACACATTTTTCTAAGATTAAGTAGATTGGTCGTTTAACAAAACCAATTTAAAGATGAACATGTGAAGTTGATGAGATTTTTCTGTGTACTTTTCTTTTTAATATTATGTATTAATTTTGTGTTTTACTTCGTATATGAATGATTTTTTTTTATTTCTTGTGTTGTAATCTTATTAAAATCTATCAATATGCTCAATATAACTTTTACTAACATTATGTTTGAATCATTGTTATCCATTGTATAGTATTGTATTGTTACTATATCTATAATATTTGTTTCAATTGTTACTTAAAATGTGTTGTATTGTTAAATTTCTTGTTACATAACAATGAAAATTCATAATTTATGGAATAACCAATTTGGTGTGTTCCTATTGTTACTTAATTTCTTTTCTCAATTATATATTTACATAATATTTGAAAATACTATTTTACCTTTAATCTCAATTATTTAAATCAAGTCAAACCTCATACCCTAAAATAATTAGGATATTTTAGTAAATTTATAAATTACAATACATTATGCACGATCAAATCAAACAATTAAAATGTTATTATACAACAAAAAATACAGTCTAACTAAATATTGTATCTTCTATACAATACAGTACAATAAAATACAATACAATATGAAATAATGGGTAACAATGATCCCAACAAAATGCAAAAGAAATTACAAATATAACTAGGAAGACATATGGAACCCACAATAAACAATAACAATAATAACACATTTAATGTAATTTATAAATATGAAATAAAGGAAATTTTTAAATAGATTTTTGACTCAAAATAAAGTTTTCGGAGTTTGGATGGAAAGGAATGAATGGATTGAAAGTGCATATTTCAATAAACTAAAAGTTCCTTTTTTTTATATTTAATTATATATCACAATAACCAATTATATAATATATAAATAATCTAAGGAAAAAATTGTATCATCAAACCAAAAAGAAAATGTTAAAAGTATGTAATTGTTTTGTCGGTGATAAAATTCTAAATTTTTAATTTTTTTTTGAATTACCCTTTGTTAATAAATTGGATATATTGTTCATAACGTGACAAACTTTACAAGTGTCTAGAATGGCCTATTAATTAATGCACTTTAATAGTATTCTTTTATTAATGAAAATGGACCAAGTTCATGTATTTGCCAACACTCACATTGTTGGTATATACTCTAATGTAATTCCTAAAAGATACCTTTTTAATAATCTAATATTTTCAAAAATCAATGGTTTGAGATTTAAATTAGTTGATAACAAGCTTGTTTGTTTTTTAAAAAAATTTTCACTTAAATATTAAACTTTTTGTTAATACATTCGTATCGAAAAAAAGTCGCAAAACTACTTAAAGATTCTCTTTTTAACTTGAGTTGTCTCACATATAATATTATTAATGTCCCTAACTTGAGTGTCCCTATATTTCATCATATGAAGTGTATGTCTCAAGTTAAGATAACTTTGTCTAACGTAAATTAAAAGCAAAAACTTTAAAAAATTACTTATTGCGCTTTTATCACTATTTAAAGTCATTAATACGAATTTATGATTTTTTTTTATATATTATTTCATCCGTTCGGTAATGTTTGTCATGATTTCTATTTTTTAGAGTTAAACTATAAAAACTTTGACTAACATTTTAAGATGCATTTTTTTCATCATATTAATATGAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTATTTTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTTACCTTTAAAAATTAGTCAAATTAACTTTTGATAAGCGTAACAAGACAAATATTTCTGGACGGAGGGAGCAATAAAAGAGAAAAAAATTTAGGGAAAATTGTATAAAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTGGAAAAAATTTGCCAGGCGTCTCTCTCCCAGAAGTCTCGCTCGCCACTCTCCCATTCTCGCCTCTCTCGCTTTATACACAGAAGTATATAATTTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATATAATTACAAACATTTTACTTTAAATATTGCAGAGAAAAAGACCA</genome_strand>
        <mrna_strand>CAAATATTGATCCATCGGCCTGGGAGGACAAGAAGAACCCTGGTGAATCTCGCTTTCCTGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGTCGTGACAAGGAAAGTCTGTGAACCACTTGAAGAGGATTCATTCAGGCCAGTCCTTCACCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAGAG.......................................................................................GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGTCAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAACCAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCT..............................................................................................................................................................................................................................AAA-AAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224200" ref_strand="+" ref_description="SGN-E224200 [cLEL-19-B9](-)">
      <seq>taaatgttccaaaggctatttctcttctagacatttttgaagagaacaagaactaaatgaatgttcttgtattccaagcaaagaatgggcaatattccattataaaggaagaaaaaaaaaagttgattagaaaaaaagagtttgcttctagtaatactgaagagagtttgcagagcagaaaaaaaaaaactatctattgtatatagatatatacataaatgcagaatataattatctggaaaaacactttttgtgtggaaacaaaaatattattatatttactatattgtgtaatccagcaggaatttgctgtataataataagtgaaatatgagtcaaaaacaagttatatttatgttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140150" stop="56893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139949" g_stop="139936" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87">
            <donor d_prob="0.494" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139848" g_stop="139505" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="359" r_length="345" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139504" i_stop="139234" i_length="271">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139233" g_stop="139217" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="376" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736">
            <donor d_prob="0.518" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136480" g_stop="136476" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="381" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E224200" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139949" e_stop="139936"/>
          <exon e_start="139848" e_stop="139505"/>
          <exon e_start="139233" e_stop="139217"/>
          <exon e_start="136480" e_stop="136476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTTCCAGAGGTAATCAATGTCTCCATCGATTGGTTCCATCGTCTAAACAAGAAACAAACGAAATCCTTTGCTTAACATGAGTGTGTCTTCTTGCAGGCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAG-AAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCTATCTAGAATGCCTTATGTTTTTGATTTTTCACTTATCTTCTGTTTGTATTGGGTGGCGATGGTGCCTTTTATGCAAGATTTTTTCATACTTGTATTGAAAATCGACTGATTTTGGTTTGTATAGGGCCTCATGATTTTTTCATATACAAGCATAGGGTTTATTGTTTTGAGAGATTTAGGGTGTGTTTGGTATGAAGAAAAATCGAAAATCCTGTTTTTTAGAAAGAAAAAAAAAAGAGGTTTCTTTACTTATTTTTTCGTATTTGAATTTAGATTTGTAATATAATTAAAATATTATGAGAAATGGAGATGTATTATTATCCGTGGAAAGTACATAAAGTACGTTTCTAAGATTTCGATCAGGAAGAAAAAAAAATTTTTTTTTTGGGTAGATGATGATTATGTGAAAACAACGATTATTTGAACTCAAACATTAATAGTCACAAGATTGGCTGCAAGAAATTGTCAACATAGTAAAGGATCTATTGTTTCAAAGAAATTACATGAAAAAATTAATGTATTTGGTTGTGGAATAATTGAACAAAAAGTTTGATTATTTCAAATTTAATTATAAACTTGTTGAAATGTCACAACCAAAAGAAAAAAATGGTTCAACTGTTCCTTCACGGCACTTCATTTGCAAAAATTGACCAAGTCTTTGGTGATATAAAATAATATATTTATTTTTATGTGTCAATTCCAAATAAAAGAGACTTTGGTGGTAGTTGACCCTAGCATTTGATTTAAAAGTTTATTCCAAAGAAATTTCTACAATTAGAATTCTTATTAGGTAATTATTACTTTTTTCCTTATGATAATTTAGTAATTTACACATTTTTCTAAGATTAAGTAGATTGGTCGTTTAACAAAACCAATTTAAAGATGAACATGTGAAGTTGATGAGATTTTTCTGTGTACTTTTCTTTTTAATATTATGTATTAATTTTGTGTTTTACTTCGTATATGAATGATTTTTTTTTATTTCTTGTGTTGTAATCTTATTAAAATCTATCAATATGCTCAATATAACTTTTACTAACATTATGTTTGAATCATTGTTATCCATTGTATAGTATTGTATTGTTACTATATCTATAATATTTGTTTCAATTGTTACTTAAAATGTGTTGTATTGTTAAATTTCTTGTTACATAACAATGAAAATTCATAATTTATGGAATAACCAATTTGGTGTGTTCCTATTGTTACTTAATTTCTTTTCTCAATTATATATTTACATAATATTTGAAAATACTATTTTACCTTTAATCTCAATTATTTAAATCAAGTCAAACCTCATACCCTAAAATAATTAGGATATTTTAGTAAATTTATAAATTACAATACATTATGCACGATCAAATCAAACAATTAAAATGTTATTATACAACAAAAAATACAGTCTAACTAAATATTGTATCTTCTATACAATACAGTACAATAAAATACAATACAATATGAAATAATGGGTAACAATGATCCCAACAAAATGCAAAAGAAATTACAAATATAACTAGGAAGACATATGGAACCCACAATAAACAATAACAATAATAACACATTTAATGTAATTTATAAATATGAAATAAAGGAAATTTTTAAATAGATTTTTGACTCAAAATAAAGTTTTCGGAGTTTGGATGGAAAGGAATGAATGGATTGAAAGTGCATATTTCAATAAACTAAAAGTTCCTTTTTTTTATATTTAATTATATATCACAATAACCAATTATATAATATATAAATAATCTAAGGAAAAAATTGTATCATCAAACCAAAAAGAAAATGTTAAAAGTATGTAATTGTTTTGTCGGTGATAAAATTCTAAATTTTTAATTTTTTTTTGAATTACCCTTTGTTAATAAATTGGATATATTGTTCATAACGTGACAAACTTTACAAGTGTCTAGAATGGCCTATTAATTAATGCACTTTAATAGTATTCTTTTATTAATGAAAATGGACCAAGTTCATGTATTTGCCAACACTCACATTGTTGGTATATACTCTAATGTAATTCCTAAAAGATACCTTTTTAATAATCTAATATTTTCAAAAATCAATGGTTTGAGATTTAAATTAGTTGATAACAAGCTTGTTTGTTTTTTAAAAAAATTTTCACTTAAATATTAAACTTTTTGTTAATACATTCGTATCGAAAAAAAGTCGCAAAACTACTTAAAGATTCTCTTTTTAACTTGAGTTGTCTCACATATAATATTATTAATGTCCCTAACTTGAGTGTCCCTATATTTCATCATATGAAGTGTATGTCTCAAGTTAAGATAACTTTGTCTAACGTAAATTAAAAGCAAAAACTTTAAAAAATTACTTATTGCGCTTTTATCACTATTTAAAGTCATTAATACGAATTTATGATTTTTTTTTATATATTATTTCATCCGTTCGGTAATGTTTGTCATGATTTCTATTTTTTAGAGTTAAACTATAAAAACTTTGACTAACATTTTAAGATGCATTTTTTTCATCATATTAATATGAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTATTTTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTTACCTTTAAAAATTAGTCAAATTAACTTTTGATAAGCGTAACAAGACAAATATTTCTGGACGGAGGGAGCAATAAAAGAGAAAAAAATTTAGGGAAAATTGTATAAAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTGGAAAAAATTTGCCAGGCGTCTCTCTCCCAGAAGTCTCGCTCGCCACTCTCCCATTCTCGCCTCTCTCGCTTTATACACAGAAGTATATAATTTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATATAATTACAAACATTTTACTTTAAATATTGCAGAGAAA</genome_strand>
        <mrna_strand>TAAATGTTCCAAAG.......................................................................................GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTCCAAGCAAAGAATGGGCAATATTCCATTATAAAGGAAGAAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTCAAAAACAAGTTATATTTATGTT...............................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552994" ref_strand="+" ref_description="SGN-E552994 [cTSB-5-L10]">
      <seq>gctaaatgttccagaggctatttctcttctagacatttttgaagagaacaagaactaaatgaatgttcttgtattacaagcagagaatggacaatataccattataaaggaagaaaaaaaaagttgattagaaaaaaagagtttgcttctagtaatactgaagagagtttgcagagcagaaaaaaaaaaactatctattgtatatagatatatacataaatgcagaatataattatctggaaaaacactttttgtgtggaaacaaaaatattattatatttactatattgtgtaatccagcaggaatttgctgtataataataagtgaaatatgagtaaaaaacaagttatatttatgttatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140159" stop="49525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139951" g_stop="139936" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87">
            <donor d_prob="0.494" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139848" g_stop="139493" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="372" r_length="356" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139492" i_stop="139234" i_length="259">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139233" g_stop="139217" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="389" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139216" i_stop="138020" i_length="1197">
            <donor d_prob="0.518" d_score="0.00"/>
            <acceptor a_prob="0.187" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138019" g_stop="138000" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="409" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E552994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139951" e_stop="139936"/>
          <exon e_start="139848" e_stop="139493"/>
          <exon e_start="139233" e_stop="139217"/>
          <exon e_start="138019" e_stop="138000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATGTTCCAGAGGTAATCAATGTCTCCATCGATTGGTTCCATCGTCTAAACAAGAAACAAACGAAATCCTTTGCTTAACATGAGTGTGTCTTCTTGCAGGCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCTATCTAGAATGCCTTATGTTTTTGATTTTTCACTTATCTTCTGTTTGTATTGGGTGGCGATGGTGCCTTTTATGCAAGATTTTTTCATACTTGTATTGAAAATCGACTGATTTTGGTTTGTATAGGGCCTCATGATTTTTTCATATACAAGCATAGGGTTTATTGTTTTGAGAGATTTAGGGTGTGTTTGGTATGAAGAAAAATCGAAAATCCTGTTTTTTAGAAAGAAAAAAAAAAGAGGTTTCTTTACTTATTTTTTCGTATTTGAATTTAGATTTGTAATATAATTAAAATATTATGAGAAATGGAGATGTATTATTATCCGTGGAAAGTACATAAAGTACGTTTCTAAGATTTCGATCAGGAAGAAAAAAAAATTTTTTTTTTGGGTAGATGATGATTATGTGAAAACAACGATTATTTGAACTCAAACATTAATAGTCACAAGATTGGCTGCAAGAAATTGTCAACATAGTAAAGGATCTATTGTTTCAAAGAAATTACATGAAAAAATTAATGTATTTGGTTGTGGAATAATTGAACAAAAAGTTTGATTATTTCAAATTTAATTATAAACTTGTTGAAATGTCACAACCAAAAGAAAAAAATGGTTCAACTGTTCCTTCACGGCACTTCATTTGCAAAAATTGACCAAGTCTTTGGTGATATAAAATAATATATTTATTTTTATGTGTCAATTCCAAATAAAAGAGACTTTGGTGGTAGTTGACCCTAGCATTTGATTTAAAAGTTTATTCCAAAGAAATTTCTACAATTAGAATTCTTATTAGGTAATTATTACTTTTTTCCTTATGATAATTTAGTAATTTACACATTTTTCTAAGATTAAGTAGATTGGTCGTTTAACAAAACCAATTTAAAGATGAACATGTGAAGTTGATGAGATTTTTCTGTGTACTTTTCTTTTTAATATTATGTATTAATTTTGTGTTTTACTTCGTATATGAATGATTTTTTTTTATTTCTTGTGTTGTAATCTTATTAAAATCTATCAATATGCTCAATATAACTTTTACTAACATTATGTTTGAATCATTGTTATCCATTGTATAGTATTGTATTGTTACTATATCTATAATATTTGTTTCAATTGTTACTTAAAATGTGTTGTATTGTTAAATTTCTTGTTACATAACAATGAAAATTCATAATTTATGGAATAACCAATTTGGTGTGTTCCTATTGTTACTTAATTTCTTTTCTCAATTATATATTTACATAATATTTGAAAATACTATTTTACCTTTAATCTCAATTATTTAAATCAAGTCAAACCTCATACCCTAAAATAATTAGGATATTTTAGTAAATTTATAAATTACAATACATTATGCACGATCAAATCAAACAATTAAAATGTTATTATACAACAAAAAATACAGTCTAACTAAATATTGTATCTTCTATACAATACAGTACAATAAAATACAATACAA</genome_strand>
        <mrna_strand>GCTAAATGTTCCAGAG.......................................................................................GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGAAAAAAAA...................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224019" ref_strand="+" ref_description="SGN-E224019 [cLEL-19-B9](-)">
      <seq>cattataaaggaagaaaaaaaaaagttgattagaaaaaaagagtttgcttctagtaatactgaagagagtttgcagaccagaaaaaaaaaaactatctattgtatatagatatatacataaatgcagaatataattatctggaaaaacactttttgtgtggaaccaaaaatattattatatttactatattgtgtaatccagcaggaaatttcctgtataataataagtgaaatatgagtaaaaaccaagttatatttatgttaaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140065" stop="56893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139765" g_stop="139504" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139503" i_stop="138020" i_length="1484">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.187" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138019" g_stop="138000" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="284" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E224019" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139765" e_stop="139504"/>
          <exon e_start="138019" e_stop="138000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATAAAGGAAGAAA-AAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGG-AATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCTATCTAGAATGCCTTATGTTTTTGATTTTTCACTTATCTTCTGTTTGTATTGGGTGGCGATGGTGCCTTTTATGCAAGATTTTTTCATACTTGTATTGAAAATCGACTGATTTTGGTTTGTATAGGGCCTCATGATTTTTTCATATACAAGCATAGGGTTTATTGTTTTGAGAGATTTAGGGTGTGTTTGGTATGAAGAAAAATCGAAAATCCTGTTTTTTAGAAAGAAAAAAAAAAGAGGTTTCTTTACTTATTTTTTCGTATTTGAATTTAGATTTGTAATATAATTAAAATATTATGAGAAATGGAGATGTATTATTATCCGTGGAAAGTACATAAAGTACGTTTCTAAGATTTCGATCAGGAAGAAAAAAAAATTTTTTTTTTGGGTAGATGATGATTATGTGAAAACAACGATTATTTGAACTCAAACATTAATAGTCACAAGATTGGCTGCAAGAAATTGTCAACATAGTAAAGGATCTATTGTTTCAAAGAAATTACATGAAAAAATTAATGTATTTGGTTGTGGAATAATTGAACAAAAAGTTTGATTATTTCAAATTTAATTATAAACTTGTTGAAATGTCACAACCAAAAGAAAAAAATGGTTCAACTGTTCCTTCACGGCACTTCATTTGCAAAAATTGACCAAGTCTTTGGTGATATAAAATAATATATTTATTTTTATGTGTCAATTCCAAATAAAAGAGACTTTGGTGGTAGTTGACCCTAGCATTTGATTTAAAAGTTTATTCCAAAGAAATTTCTACAATTAGAATTCTTATTAGGTAATTATTACTTTTTTCCTTATGATAATTTAGTAATTTACACATTTTTCTAAGATTAAGTAGATTGGTCGTTTAACAAAACCAATTTAAAGATGAACATGTGAAGTTGATGAGATTTTTCTGTGTACTTTTCTTTTTAATATTATGTATTAATTTTGTGTTTTACTTCGTATATGAATGATTTTTTTTTATTTCTTGTGTTGTAATCTTATTAAAATCTATCAATATGCTCAATATAACTTTTACTAACATTATGTTTGAATCATTGTTATCCATTGTATAGTATTGTATTGTTACTATATCTATAATATTTGTTTCAATTGTTACTTAAAATGTGTTGTATTGTTAAATTTCTTGTTACATAACAATGAAAATTCATAATTTATGGAATAACCAATTTGGTGTGTTCCTATTGTTACTTAATTTCTTTTCTCAATTATATATTTACATAATATTTGAAAATACTATTTTACCTTTAATCTCAATTATTTAAATCAAGTCAAACCTCATACCCTAAAATAATTAGGATATTTTAGTAAATTTATAAATTACAATACATTATGCACGATCAAATCAAACAATTAAAATGTTATTATACAACAAAAAATACAGTCTAACTAAATATTGTATCTTCTATACAATACAGTACAATAAAATACAATACAA</genome_strand>
        <mrna_strand>CATTATAAAGGAAGAAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGACCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAACCAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAAATTTCCTGTATAATAATAAGTGAAATATGAGTAAAAACCAAGTTATATTTATGTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309368" ref_strand="+" ref_description="SGN-E309368 [cLEY-22-G2]">
      <seq>ctatttctcttctagacatttttgaagagaacaagaactaaatgaatgttcttgtattacaagcagagaatggacaatataccattataaaggaagaaaaaaaaagttgattagaaaaaaagagtttgcttctagtaatactgaagagagtttgcagagcagaaaaaaaaaaactatctattgtatatagatatatacataaatgcagaatataattatctggaaaaacactttttgtgtggaaacaaaaatattattatatttactatattgtgtaatccagcaggaatttgctgtataataataagtgaaatatgagtaaaaaacaagttatatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="140147" stop="139209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139847" g_stop="139510" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="349"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-E309368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139847" e_stop="139510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTT</genome_strand>
        <mrna_strand>CTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>216</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6787" PGL_stop="6189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6787" e_stop="6189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6787" e_stop="6189" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6787" stop="6191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6776" stop="6189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTATATTAT</gDNA_template>
            <first_frame> K  N  I  A  I  N  P  L  V  L  L  L  N  L  H  I  S  S  I  F  F  S  K  N  Y  G  I  W  E  V  F  C  *  G  N  S  L  W  *  K  K  *  I  K  K  N  Q  N  C  *  K  *  *  Y  H  Y  Y  Y  Y  L  C  V  *  R  *  V  R  *  K  K  A  *  N  Q  E  T  G  E  I  *  F  R  T  R  R  R  G  K  R  K  E  *  H  F  *  E  K  Y  N  Y  S  R  G  E  N  K  S  T  R  R  C  *  Y  F  E  *  *  W  G  Y  K  S  E  N  L  N  E  K  R  R  C  C  E  T  S  D  K  I  S  K  R  R  G  T  *  V  Y  G  Y  C  S  T  T  C  T  S  S  F  *  *  C  *  S  S  I  V  N  S  *  V  *  Q  *  S  I  Y  N  L  F  C  T  *  L  Y  V  I  I  L  E  *  I  I  N  N  L  L  Y  Y  I   </first_frame>
            <second_frame>  K  I  *  P  *  T  P  *  Y  S  S  *  I  S  I  L  V  Q  Y  F  F  L  K  I  M  G  F  G  R  S  F  V  K  G  I  H  F  G  E  K  N  K  S  R  K  T  K  I  V  E  S  S  N  I  T  T  T  T  T  Y  V  C  R  D  E  L  D  K  K  K  P  K  I  K  K  R  V  R  F  D  L  E  P  E  E  E  E  N  E  K  N  S  T  F  E  K  N  T  I  I  Q  E  E  K  T  K  V  Q  E  G  A  N  I  S  N  D  D  G  V  I  K  V  K  I  L  M  K  K  E  D  A  A  R  L  L  I  K  Y  R  N  G  G  E  L  E  F  M  D  I  A  Q  Q  L  V  Q  V  P  S  S  S  V  K  V  L  *  L  I  V  K  Y  D  N  R  A  S  T  I  Y  F  V  P  N  F  M  *  *  F  *  N  K  *  *  I  T  Y  Y  I  I  L  </second_frame>
            <third_frame>   K  Y  S  H  K  P  L  S  T  P  P  K  S  P  Y  *  F  N  I  F  F  *  K  L  W  D  L  G  G  L  L  L  R  E  F  T  L  V  K  K  I  N  Q  E  K  P  K  L  L  K  V  V  I  S  L  L  L  L  L  M  C  V  E  M  S  *  I  K  K  S  L  K  S  R  N  G  *  D  L  I  *  N  Q  K  K  R  K  T  K  R  I  A  L  L  R  K  I  Q  L  F  K  R  R  K  Q  K  Y  K  K  V  L  I  F  R  M  M  M  G  L  *  K  *  K  S  *  *  K  K  K  M  L  R  D  F  *  *  N  I  E  T  E  G  N  L  S  L  W  I  L  L  N  N  L  Y  K  F  L  L  V  V  L  K  F  Y  S  *  *  L  S  M  T  I  E  H  L  Q  F  I  L  Y  L  T  L  C  N  N  F  R  I  N  N  K  *  L  I  I  L  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6750" stop="6292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISILVQYFFLKIMGFGRSFVKGIHFGEKNKSRKTKIVESSNITTTTTYVCRDELDKKKPKIKKRVRFDLEPEEEENEKNSTFEKNTIIQEEKTKVQEGANISNDDGVIKVKILMKKEDAARLLIKYRNGGELEFMDIAQQLVQVPSSSVKVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6191" PGL_stop="6787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6191" e_stop="6787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6191" e_stop="6787" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6191" stop="6787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATAATATAATAAGTTATTTATTATTTATTCTAAAATTATTACATAAAGTTAGGTACAAAATAAATTGTAGATGCTCTATTGTCATACTTAACTATTAACTATAGAACTTTAACACTACTAGAAGGAACTTGTACAAGTTGTTGAGCAATATCCATAAACTCAAGTTCCCCTCCGTTTCGATATTTTATCAGAAGTCTCGCAGCATCTTCTTTTTTCATTAAGATTTTCACTTTTATAACCCCATCATCATTCGAAATATTAGCACCTTCTTGTACTTTTGTTTTCTCCTCTTGAATAATTGTATTTTTCTCAAAAGTGCTATTCTTTTCGTTTTCCTCTTCTTCTGGTTCTAAATCAAATCTCACCCGTTTCTTGATTTTAGGCTTTTTTTTATCTAACTCATCTCTACACACATAAGTAGTAGTAGTAGTGATATTACTACTTTCAACAATTTTGGTTTTTCTTGATTTATTTTTTTCACCAAAGTGAATTCCCTTAACAAAAGACCTCCCAAATCCCATAATTTTTAGAAAAAAATATTGAACTAATATGGAGATTTAGGAGGAGTACTAAGGGGTTTATGGCTATATTTTT</gDNA_template>
            <first_frame> N  I  I  *  *  V  I  Y  Y  L  F  *  N  Y  Y  I  K  L  G  T  K  *  I  V  D  A  L  L  S  Y  L  T  I  N  Y  R  T  L  T  L  L  E  G  T  C  T  S  C  *  A  I  S  I  N  S  S  S  P  P  F  R  Y  F  I  R  S  L  A  A  S  S  F  F  I  K  I  F  T  F  I  T  P  S  S  F  E  I  L  A  P  S  C  T  F  V  F  S  S  *  I  I  V  F  F  S  K  V  L  F  F  S  F  S  S  S  S  G  S  K  S  N  L  T  R  F  L  I  L  G  F  F  L  S  N  S  S  L  H  T  *  V  V  V  V  V  I  L  L  L  S  T  I  L  V  F  L  D  L  F  F  S  P  K  *  I  P  L  T  K  D  L  P  N  P  I  I  F  R  K  K  Y  *  T  N  M  E  I  *  E  E  Y  *  G  V  Y  G  Y  I  F </first_frame>
            <second_frame>  I  *  Y  N  K  L  F  I  I  Y  S  K  I  I  T  *  S  *  V  Q  N  K  L  *  M  L  Y  C  H  T  *  L  L  T  I  E  L  *  H  Y  *  K  E  L  V  Q  V  V  E  Q  Y  P  *  T  Q  V  P  L  R  F  D  I  L  S  E  V  S  Q  H  L  L  F  S  L  R  F  S  L  L  *  P  H  H  H  S  K  Y  *  H  L  L  V  L  L  F  S  P  L  E  *  L  Y  F  S  Q  K  C  Y  S  F  R  F  P  L  L  L  V  L  N  Q  I  S  P  V  S  *  F  *  A  F  F  Y  L  T  H  L  Y  T  H  K  *  *  *  *  *  Y  Y  Y  F  Q  Q  F  W  F  F  L  I  Y  F  F  H  Q  S  E  F  P  *  Q  K  T  S  Q  I  P  *  F  L  E  K  N  I  E  L  I  W  R  F  R  R  S  T  K  G  F  M  A  I  F   </second_frame>
            <third_frame>   Y  N  I  I  S  Y  L  L  F  I  L  K  L  L  H  K  V  R  Y  K  I  N  C  R  C  S  I  V  I  L  N  Y  *  L  *  N  F  N  T  T  R  R  N  L  Y  K  L  L  S  N  I  H  K  L  K  F  P  S  V  S  I  F  Y  Q  K  S  R  S  I  F  F  F  H  *  D  F  H  F  Y  N  P  I  I  I  R  N  I  S  T  F  L  Y  F  C  F  L  L  L  N  N  C  I  F  L  K  S  A  I  L  F  V  F  L  F  F  W  F  *  I  K  S  H  P  F  L  D  F  R  L  F  F  I  *  L  I  S  T  H  I  S  S  S  S  S  D  I  T  T  F  N  N  F  G  F  S  *  F  I  F  F  T  K  V  N  S  L  N  K  R  P  P  K  S  H  N  F  *  K  K  I  L  N  *  Y  G  D  L  G  G  V  L  R  G  L  W  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13769" PGL_stop="17743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13769" e_stop="13893"/>
            <exon e_start="15887" e_stop="16047"/>
            <exon e_start="17467" e_stop="17743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.920"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.957"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="13769" e_stop="13893" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="13894" i_stop="15886" i_length="1993"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="15887" e_stop="16047" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16048" i_stop="17466" i_length="1419"/>
          </intron>
          <exon e_serial="3" e_score="0.910">
            <gDNA_exon_boundary e_start="17467" e_stop="17743" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13769" stop="13893"/>
              <exon start="15887" stop="16047"/>
              <exon start="17467" stop="17743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13769" stop="13893"/>
              <exon start="15887" stop="16047"/>
              <exon start="17467" stop="17743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTTTAGACCTTTTTTTTTTTTCCAGATTTTGGAGACGAAACAATGGCTGGAGCAGGAGCACATATCGTGAAGAGAATCCCACGCATCAAATTTCCTCAACGACACGCAAAAGCTTCTTCTG : GTTCCATGCAGCAGAACTCACAACACATGAAAACTTCCGCAACTGATGATGTTCCTCAAACATTCTTCTCAAGATCCCCATCTAGCACGTCTGTTGCAGGGAAGGCTTCTGACCAACCTAAAAGAACACCGGTGTCTCAGGAGGAAATTGAGTCCATTTTG : TTAGGTGGCTGCAACTAATTTTGAGGCGAAGATGTGCAGACAGAGGACATAGTTTTTCGACGTCTGGCTTACATTTGGGTGATTTCTTTTGCATGTATGGTATAACTGACACAGTTTTCTGGAATTATAAGTGTATTCTGCAAATGACATCTTTAATTAATGATCATTAGACATTGGAGGCTAATGCGTGGATTGGCTTACTACCTTGATACTGAATGTAAACATTTGCAGACTATGCATTATAAAATTTTGGTCCATCTGTTTGAGAATCTGTCAA</gDNA_template>
            <first_frame> Q  F  L  D  L  F  F  F  S  R  F  W  R  R  N  N  G  W  S  R  S  T  Y  R  E  E  N  P  T  H  Q  I  S  S  T  T  R  K  S  F  F  W :   F  H  A  A  E  L  T  T  H  E  N  F  R  N  *  *  C  S  S  N  I  L  L  K  I  P  I  *  H  V  C  C  R  E  G  F  *  P  T  *  K  N  T  G  V  S  G  G  N  *  V  H  F   : V  R  W  L  Q  L  I  L  R  R  R  C  A  D  R  G  H  S  F  S  T  S  G  L  H  L  G  D  F  F  C  M  Y  G  I  T  D  T  V  F  W  N  Y  K  C  I  L  Q  M  T  S  L  I  N  D  H  *  T  L  E  A  N  A  W  I  G  L  L  P  *  Y  *  M  *  T  F  A  D  Y  A  L  *  N  F  G  P  S  V  *  E  S  V   </first_frame>
            <second_frame>  N  F  *  T  F  F  F  F  P  D  F  G  D  E  T  M  A  G  A  G  A  H  I  V  K  R  I  P  R  I  K  F  P  Q  R  H  A  K  A  S  S   : G  S  M  Q  Q  N  S  Q  H  M  K  T  S  A  T  D  D  V  P  Q  T  F  F  S  R  S  P  S  S  T  S  V  A  G  K  A  S  D  Q  P  K  R  T  P  V  S  Q  E  E  I  E  S  I  L  :  L  G  G  C  N  *  F  *  G  E  D  V  Q  T  E  D  I  V  F  R  R  L  A  Y  I  W  V  I  S  F  A  C  M  V  *  L  T  Q  F  S  G  I  I  S  V  F  C  K  *  H  L  *  L  M  I  I  R  H  W  R  L  M  R  G  L  A  Y  Y  L  D  T  E  C  K  H  L  Q  T  M  H  Y  K  I  L  V  H  L  F  E  N  L  S  </second_frame>
            <third_frame>   I  F  R  P  F  F  F  F  Q  I  L  E  T  K  Q  W  L  E  Q  E  H  I  S  *  R  E  S  H  A  S  N  F  L  N  D  T  Q  K  L  L  L  :  V  P  C  S  R  T  H  N  T  *  K  L  P  Q  L  M  M  F  L  K  H  S  S  Q  D  P  H  L  A  R  L  L  Q  G  R  L  L  T  N  L  K  E  H  R  C  L  R  R  K  L  S  P  F  C :   *  V  A  A  T  N  F  E  A  K  M  C  R  Q  R  T  *  F  F  D  V  W  L  T  F  G  *  F  L  L  H  V  W  Y  N  *  H  S  F  L  E  L  *  V  Y  S  A  N  D  I  F  N  *  *  S  L  D  I  G  G  *  C  V  D  W  L  T  T  L  I  L  N  V  N  I  C  R  L  C  I  I  K  F  W  S  I  C  L  R  I  C  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13779" stop="13893"/>
                    <exon start="15887" stop="16047"/>
                    <exon start="17467" stop="17484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFFFPDFGDETMAGAGAHIVKRIPRIKFPQRHAKASSGSMQQNSQHMKTSATDDVPQTFFSRSPSSTSVAGKASDQPKRTPVSQEEIESILLGGCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19202" PGL_stop="18204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19202" e_stop="18204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19202" e_stop="18204" e_length="999"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19202" stop="18737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19202" stop="18753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19153" stop="18364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19133" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19104" stop="18652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19104" stop="18945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19101" stop="18602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19098" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19093" stop="18588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19075" stop="18564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18992" stop="18207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18863" stop="18365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18648" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18644" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273899" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18636" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18588" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18561" stop="18213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18555" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18554" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</gDNA_template>
            <first_frame> K  N  R  L  V  V  R  I  *  K  D  K  L  Q  F  P  I  S  T  S  H  L  I  L  Y  H  H  L  S  Q  I  Q  S  S  *  K  K  I  K  T  M  A  S  A  S  S  F  Q  L  S  S  L  Q  I  Q  T  P  P  L  K  K  S  N  F  L  G  Q  S  V  N  L  N  L  S  S  S  V  H  T  K  S  A  M  K  S  S  S  N  S  V  T  P  I  A  K  F  N  L  Y  E  I  L  G  G  R  G  L  C  N  G  E  E  G  I  E  K  E  L  K  K  S  I  S  E  E  Q  K  A  V  G  S  A  A  A  A  A  S  D  D  D  N  Q  E  N  K  E  T  G  E  I  P  E  D  G  F  E  K  E  M  M  G  F  T  G  G  F  P  G  G  E  K  G  L  M  K  F  I  E  K  N  P  P  P  P  P  P  K  K  T  E  S  S  M  V  S  G  F  N  Q  S  L  V  K  K  P  K  P  P  E  L  P  L  L  L  P  G  M  I  A  I  V  K  N  S  N  N  P  Y  Y  M  Y  C  G  I  V  Q  R  I  T  D  G  K  A  A  V  L  F  E  G  G  N  W  D  R  L  I  S  F  R  L  E  E  L  E  R  R  E  K  G  P  P  M  V  N  L  K  S  V  I  L  E  K  M  V  E  K  S  S  E  A  *  I  A  S  V  F  E  *  I  V  C  S  F  V  F  W  V  V  V  H  T  S  C  K  F  C  N  G  N  G  M  *  *  E  M  Q  K  N  F  C  A  G  R </first_frame>
            <second_frame>  K  T  D  W  W  S  E  F  E  R  T  N  Y  S  F  P  F  L  L  L  I  S  S  S  T  I  I  F  P  K  S  K  V  L  E  K  K  S  K  P  W  L  L  L  L  P  F  N  S  Q  A  F  K  F  K  P  H  L  L  K  N  Q  T  F  L  V  N  L  S  I  S  T  S  V  V  V  F  I  P  N  Q  L  *  N  H  L  Q  T  Q  L  H  Q  *  Q  N  S  I  F  M  R  F  L  E  V  E  V  C  V  M  E  K  R  V  *  R  K  S  *  K  S  R  F  P  K  N  K  R  Q  *  D  Q  Q  Q  Q  Q  L  V  M  M  I  I  K  K  T  R  R  L  G  R  Y  R  R  T  D  L  R  K  K  *  W  G  L  L  A  D  F  R  E  V  R  R  V  *  *  N  L  *  R  K  I  H  H  H  H  H  P  R  K  Q  N  Q  V  W  F  L  V  L  I  K  V  L  *  R  N  Q  S  H  L  N  C  H  F  C  Y  L  G  *  L  L  L  S  R  I  L  I  I  H  I  I  C  I  V  G  L  C  R  G  L  L  M  V  R  L  L  C  F  L  K  V  G  T  G  I  G  *  Y  L  S  G  S  K  N  S  N  V  E  R  K  D  R  Q  W  *  I  L  S  L  *  Y  L  R  R  W  *  K  R  A  L  K  L  E  L  L  Q  F  L  S  R  L  F  V  L  L  S  F  G  L  L  Y  I  Q  A  V  S  F  V  M  A  M  A  C  N  K  K  C  R  K  T  F  V  Q  E   </second_frame>
            <third_frame>   K  Q  I  G  G  Q  N  L  K  G  Q  I  T  V  S  H  F  Y  F  S  S  H  P  L  P  S  S  F  P  N  P  K  F  L  K  K  N  Q  N  H  G  F  C  F  F  L  S  T  L  K  P  S  N  S  N  P  T  S  *  K  I  K  L  S  W  S  I  C  Q  S  Q  P  Q  *  *  C  S  Y  Q  I  S  Y  E  I  I  F  K  L  S  Y  T  N  S  K  I  Q  S  L  *  D  S  W  R  *  R  S  V  *  W  R  R  G  Y  R  E  R  A  K  K  V  D  F  R  R  T  K  G  S  R  I  S  S  S  S  S  *  *  *  *  *  S  R  K  Q  G  D  W  G  D  T  G  G  R  I  *  E  R  N  D  G  V  Y  W  R  I  S  G  R  *  E  G  S  N  E  I  Y  R  E  K  S  T  T  T  T  T  Q  E  N  R  I  K  Y  G  F  W  F  *  S  K  S  C  E  E  T  K  A  T  *  I  A  T  F  V  T  W  D  D  C  Y  C  Q  E  F  *  *  S  I  L  Y  V  L  W  D  C  A  E  D  Y  *  W  *  G  C  C  A  F  *  R  W  E  L  G  *  V  D  I  F  Q  A  R  R  T  R  T  *  R  E  R  T  A  N  G  E  S  *  V  C  D  T  *  E  D  G  R  K  E  L  *  S  L  N  C  F  S  F  *  V  D  C  L  F  F  C  L  L  G  C  C  T  Y  K  L  *  V  L  *  W  Q  W  H  V  I  R  N  A  E  K  L  L  C  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19097" stop="18330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKTMASASSFQLSSLQIQTPPLKKSNFLGQSVNLNLSSSVHTKSAMKSSSNSVTPIAKFNLYEILGGRGLCNGEEGIEKELKKSISEEQKAVGSAAAAASDDDNQENKETGEIPEDGFEKEMMGFTGGFPGGEKGLMKFIEKNPPPPPPKKTESSMVSGFNQSLVKKPKPPELPLLLPGMIAIVKNSNNPYYMYCGIVQRITDGKAAVLFEGGNWDRLISFRLEELERREKGPPMVNLKSVILEKMVEKSSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28099" PGL_stop="30531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28099" e_stop="28989"/>
            <exon e_start="29071" e_stop="29154"/>
            <exon e_start="29653" e_stop="30531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="28099" e_stop="28989" e_length="891"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29071" e_stop="29154" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29653" e_stop="30531" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28099" stop="28761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28302" stop="28758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28341" stop="28794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28389" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="29717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28538" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28669" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28827" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28827" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28827" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="29937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28827" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="29849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28897" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29692" stop="30510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29694" stop="30510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29754" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29811" stop="30433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29880" stop="30531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29900" stop="30305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG : GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG : AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTTATGCTCTT</gDNA_template>
            <first_frame> S  G  V  D  S  P  S  M  F  G  S  L  D  D  D  S  R  G  K  S  T  N  R  H  R  R  I  N  D  P  T  I  G  R  M  Q  G  N  A  W  K  G  V  P  N  W  P  S  P  L  A  N  G  F  M  P  F  Q  H  G  P  P  P  V  G  F  H  P  A  M  Q  Q  F  P  G  P  P  M  F  G  V  R  P  S  M  D  L  S  H  P  G  V  P  Y  H  M  P  D  A  D  R  F  S  G  H  G  R  P  M  G  W  R  T  P  L  D  D  S  C  G  P  P  L  H  G  W  D  A  N  N  F  G  E  E  A  H  L  Y  G  R  P  D  W  D  Q  N  R  T  L  S  N  N  S  R  S  W  E  T  I  G  D  V  W  K  G  P  I  R  G  T  S  V  E  V  P  S  G  S  Q  K  E  V  C  S  I  Q  G  P  D  N  S  F  A  S  Q  L  A  Q  Q  A  L  G  E  Q  K  Q  T  D  Q  D  A  E  S  N  N  I  S  F  Q  S  S  S  V  P  G  R  N  T  L  E  D  L  K  I  N  H  E  E  Q  P  I  D  V  K  S  S  G  K  G  E  A  S  L  N  N  V  Y  L  K  K  L  D  I  S  A  D  L  T  E  P  E  L  F  D  R  C  T  S  L  M  D  V  E  Q  I  L  T  S  D  N  S  K  I  L  F  L  E  :  G  A  V  E  S  N  V  V  L  P  S  K  F  S  T  V  P  L  I  A  T  V  A  D  S  V  F  Q  :  K  A  I  S  L  Y  K  R  R  E  K  I  E  F  T  N  G  G  H  F  T  F  S  G  Q  L  G  V  S  S  P  A  P  K  L  E  N  S  S  S  V  H  G  K  L  E  C  S  G  L  V  D  D  A  L  V  E  E  G  D  E  G  T  D  L  L  V  S  S  I  S  S  E  E  V  V  L  S  Q  T  T  L  Q  E  L  C  E  P  M  G  L  N  P  G  E  K  S  D  L  P  S  S  L  D  E  G  A  V  P  T  E  K  S  D  F  P  T  T  M  D  E  G  A  V  P  I  E  K  P  D  L  P  T  S  M  D  E  G  A  V  L  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  P  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  M  E  A  D  T  V  V  D  V  A  Q  E  I  K  V  L  E  T  A  E  E  V  G  Q  T  D  A  L  A  S  L  V  S  K  D  L  M  G  A  D  D  V  D  A  K  C  D  A  L  P  H  T  D  V  S  T  E  V  F  E  A  V  V  P  E  S  I  E  S  N  L  S  R  I  Q  H  S  S  E  S  T  H  *  D  N  L  F  F  R  V  F  E  M  P  L  L  Y  S  R  L  L  F  C  L  L  A  A  L  *  L  I  N  K  T  Q  S  F  L  Y  A  L </first_frame>
            <second_frame>  L  G  L  T  A  H  Q  C  L  A  L  W  T  T  T  V  E  G  S  L  P  I  V  T  E  E  S  M  I  R  L  *  E  E  C  K  E  M  L  G  R  G  F  Q  I  G  R  H  L  W  Q  M  V  S  C  L  S  S  M  V  H  L  L  L  V  S  I  P  Q  C  S  S  F  L  D  H  Q  C  S  V  L  G  L  Q  W  T  *  V  T  L  G  F  L  T  I  C  Q  M  Q  T  A  F  L  A  M  G  A  Q  W  V  G  E  L  H  *  M  I  H  V  G  P  H  C  M  D  G  M  L  T  I  L  V  K  K  L  T  F  M  E  G  Q  T  G  T  R  I  G  H  C  P  T  I  V  G  V  G  R  Q  L  V  M  Y  G  K  G  Q  *  G  A  P  V  W  R  C  H  P  V  H  R  R  R  S  V  Q  F  R  A  L  I  I  L  L  L  L  S  W  L  S  K  L  W  V  N  K  S  R  Q  I  K  M  L  K  A  I  I  S  V  F  S  P  A  V  S  P  E  G  T  L  *  K  I  *  K  L  I  M  K  S  N  Q  L  M  *  S  H  Q  G  K  E  R  L  V  L  T  M  F  T  S  K  S  L  I  S  Q  Q  I  *  Q  S  P  S  C  L  I  D  V  L  V  *  W  M  L  S  R  S  *  H  L  I  T  Q  R  S  Y  S  W  R :   V  L  *  N  L  M  *  C  C  P  A  N  F  Q  L  F  H  S  L  L  L  W  L  I  L  F  F  R :   K  P  F  P  F  T  R  G  G  R  K  L  N  S  Q  M  V  D  I  L  L  S  L  V  S  *  V  C  P  L  L  H  L  N  *  R  I  Q  V  Q  F  M  V  N  L  N  A  P  V  W  W  M  M  R  *  *  K  R  V  M  R  G  L  I  S  L  L  V  L  L  V  L  R  R  L  Y  F  H  K  P  H  F  R  S  C  V  S  Q  W  V  *  T  Q  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  R  L  R  N  Q  I  F  L  L  P  W  M  K  E  L  S  Q  L  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  *  V  R  N  Q  I  S  L  L  A  W  M  K  E  L  G  R  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  A  W  K  L  I  Q  L  W  M  W  P  R  K  L  K  F  *  K  L  R  K  R  W  A  K  L  M  P  L  L  L  W  C  L  K  I  *  W  G  L  M  M  L  M  L  N  V  M  L  F  H  T  L  M  C  L  L  R  Y  L  R  Q  W  C  Q  S  Q  L  S  L  I  *  V  G  Y  S  I  L  L  K  V  H  I  K  T  I  Y  F  S  E  F  L  K  C  P  F  Y  I  P  V  F  C  F  V  C  L  L  L  F  S  *  S  I  K  L  R  V  F  F  M  L   </second_frame>
            <third_frame>   W  G  *  Q  P  I  N  V  W  L  F  G  R  R  Q  *  R  E  V  Y  Q  S  S  Q  K  N  Q  *  S  D  Y  R  K  N  A  R  K  C  L  E  G  G  S  K  L  A  V  T  S  G  K  W  F  H  A  F  P  A  W  S  T  S  C  W  F  P  S  R  N  A  A  V  S  W  T  T  N  V  R  C  *  A  F  N  G  L  E  S  P  W  G  S  L  P  Y  A  R  C  R  P  L  F  W  P  W  A  P  N  G  L  A  N  S  T  R  *  F  M  W  A  P  I  A  W  M  G  C  *  Q  F  W  *  R  S  S  P  L  W  K  A  R  L  G  P  E  *  D  I  V  Q  Q  *  S  E  L  G  D  N  W  *  C  M  E  R  A  N  K  G  H  Q  C  G  G  A  I  R  F  T  E  G  G  L  F  N  S  G  P  *  *  F  F  C  F  S  V  G  S  A  S  S  G  *  T  K  A  D  R  S  R  C  *  K  Q  *  Y  Q  F  S  V  Q  Q  C  P  R  K  E  H  S  R  R  F  E  N  *  S  *  R  A  T  N  *  C  E  V  I  R  E  R  R  G  *  S  *  Q  C  L  P  Q  K  A  *  Y  L  S  R  S  D  R  A  R  V  V  *  S  M  Y  *  F  N  G  C  *  A  D  L  D  I  *  *  L  K  D  L  I  L  G   : G  C  C  R  I  *  C  S  A  A  Q  Q  I  F  N  C  S  T  H  C  Y  C  G  *  F  C  F  S   : E  S  H  F  P  L  Q  E  E  G  E  N  *  I  H  K  W  W  T  F  Y  F  L  W  S  A  R  C  V  L  S  C  T  *  I  R  E  F  K  F  S  S  W  *  T  *  M  L  R  S  G  G  *  C  A  S  R  R  G  *  *  G  D  *  S  P  C  *  F  Y  *  F  *  G  G  C  T  F  T  N  H  T  S  G  A  V  *  A  N  G  F  E  P  R  R  E  I  R  S  P  F  *  L  G  *  R  S  C  S  D  *  E  I  R  F  S  Y  Y  H  G  *  R  S  C  P  N  *  E  T  R  S  P  Y  *  H  G  *  R  S  C  S  E  *  E  I  R  S  P  Y  *  H  G  *  R  S  W  A  E  R  E  I  R  S  P  Y  *  H  G  *  R  S  W  H  G  S  *  Y  S  C  G  C  G  P  G  N  *  S  F  R  N  C  G  R  G  G  P  N  *  C  P  C  F  S  G  V  *  R  F  D  G  G  *  *  C  *  C  *  M  *  C  S  S  T  H  *  C  V  Y  *  G  I  *  G  S  G  A  R  V  N  *  V  *  F  E  S  D  T  A  F  F  *  K  Y  T  L  R  Q  F  I  F  P  S  F  *  N  A  P  F  I  F  P  S  S  V  L  S  A  C  C  S  L  A  N  Q  *  N  S  E  F  S  L  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28099" stop="28989"/>
                    <exon start="29071" stop="29154"/>
                    <exon start="29653" stop="30417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1737</number_coding_nucleotides>
                  <number_encoded_amino_acids>579</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVDSPSMFGSLDDDSRGKSTNRHRRINDPTIGRMQGNAWKGVPNWPSPLANGFMPFQHGPPPVGFHPAMQQFPGPPMFGVRPSMDLSHPGVPYHMPDADRFSGHGRPMGWRTPLDDSCGPPLHGWDANNFGEEAHLYGRPDWDQNRTLSNNSRSWETIGDVWKGPIRGTSVEVPSGSQKEVCSIQGPDNSFASQLAQQALGEQKQTDQDAESNNISFQSSSVPGRNTLEDLKINHEEQPIDVKSSGKGEASLNNVYLKKLDISADLTEPELFDRCTSLMDVEQILTSDNSKILFLEGAVESNVVLPSKFSTVPLIATVADSVFQKAISLYKRREKIEFTNGGHFTFSGQLGVSSPAPKLENSSSVHGKLECSGLVDDALVEEGDEGTDLLVSSISSEEVVLSQTTLQELCEPMGLNPGEKSDLPSSLDEGAVPTEKSDFPTTMDEGAVPIEKPDLPTSMDEGAVLSEKSDLPTSMDEGAGPSEKSDLPTSMDEGAGMEADTVVDVAQEIKVLETAEEVGQTDALASLVSKDLMGADDVDAKCDALPHTDVSTEVFEAVVPESIESNLSRIQHSSESTH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34785" PGL_stop="38153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34785" e_stop="34821"/>
            <exon e_start="35761" e_stop="35824"/>
            <exon e_start="35918" e_stop="36038"/>
            <exon e_start="37205" e_stop="37359"/>
            <exon e_start="37862" e_stop="38153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34785" e_stop="34821" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34822" i_stop="35760" i_length="939"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35761" e_stop="35824" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35825" i_stop="35917" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35918" e_stop="36038" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.691">
            <gDNA_intron_boundary i_start="36039" i_stop="37204" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37205" e_stop="37359" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.950">
            <gDNA_intron_boundary i_start="37360" i_stop="37861" i_length="502"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="37862" e_stop="38153" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34785" stop="34821"/>
              <exon start="35761" stop="35824"/>
              <exon start="35918" stop="36038"/>
              <exon start="37205" stop="37359"/>
              <exon start="37862" stop="38153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCA : ATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACG : AGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAG : ATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAG : GTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTATTTCCACTA</gDNA_template>
            <first_frame> L  L  W  K  K  E  K  L  I  *  K  L   : N  *  N  I  L  T  K  Y  C  S  L  L  A  C  R  V  I  C  I  *  E  R :   D  G  R  L  Y  Q  A  N  L  F  Q  S  M  M  T  L  K  L  M  T  G  F  L  N  F  L  F  F  R  D  R  V  F  S  C  I  H  H  P  *  :  I  *  V  L  K  T  Q  L  F  Y  L  M  L  L  K  L  E  P  C  L  V  *  H  E  T  T  V  I  L  D  I  A  F  L  F  Q  L  V  M  G  *  D  M  N  A  Q  V  L  P  K  Y  R :   L  I  P  G  W  R  H  Y  R  I  I  L  I  C  N  L  T  A  P  R  L  M  S  *  P  I  L  D  I  F  F  C  Q  Y  S  V  A  T  T  C  K  *  T  R  N  *  S  K  D  S  I  I  I  H  F  G  S  L  I  E  Q  L  L  A  F  I  H  Y  S  V  H  S  L  F  N  C  H  C  Q  V  T  T  T  C  I  N  K  M  Y  S  Q  F  Q  V  F  P  L </first_frame>
            <second_frame>  C  F  G  R  K  R  S  S  F  K  S  S  :  I  R  T  Y  *  R  N  T  A  V  C  S  H  V  G  L  F  V  S  E  N   : E  M  G  G  F  T  R  R  T  S  S  N  R  *  *  H  *  S  *  *  L  A  S  *  I  S  C  S  S  G  I  G  Y  F  L  V  F  I  I  H  R :   S  E  S  S  R  L  N  S  S  I  *  C  C  *  S  W  S  H  A  L  S  D  T  R  Q  R  *  Y  S  I  L  L  F  Y  F  N  S  S  W  A  E  I  *  M  L  K  C  F  Q  N  T   : G  *  F  L  V  G  V  I  T  E  S  F  *  S  A  I  *  L  H  R  A  *  *  V  D  Q  Y  L  T  S  F  S  V  S  I  R  *  Q  Q  P  V  N  R  P  E  I  E  A  K  T  A  L  L  F  T  L  E  V  *  L  N  N  F  *  H  L  S  I  I  L  Y  I  A  Y  L  T  V  I  V  K  L  L  L  L  V  *  I  K  C  I  H  S  F  K  Y  F  H   </second_frame>
            <third_frame>   A  L  E  E  R  E  A  H  L  K  A  Q :   L  E  H  I  D  E  I  L  Q  S  A  R  M  S  G  Y  L  Y  L  R  T  :  R  W  E  A  L  P  G  E  P  L  P  I  D  D  D  T  E  V  D  D  W  L  P  K  F  L  V  L  Q  G  S  G  I  F  L  Y  S  S  S  I   : D  L  S  P  Q  D  S  T  L  L  S  D  V  V  E  V  G  A  M  P  C  L  T  R  D  N  G  D  T  R  Y  C  F  F  I  S  T  R  H  G  L  R  Y  E  C  S  S  A  S  K  I  Q  :  V  D  S  W  L  A  S  L  P  N  H  S  D  L  Q  S  N  C  T  A  P  D  E  L  T  N  T  *  H  L  F  L  S  V  F  G  S  N  N  L  *  I  D  Q  K  L  K  Q  R  Q  H  Y  Y  S  L  W  K  F  D  *  T  T  F  S  I  Y  P  L  F  C  T  *  L  I  *  L  S  L  S  S  Y  Y  Y  L  Y  K  *  N  V  F  T  V  S  S  I  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34787" stop="34821"/>
                    <exon start="35761" stop="35824"/>
                    <exon start="35918" stop="36038"/>
                    <exon start="37205" stop="37359"/>
                    <exon start="37862" stop="37945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEEREAHLKAQLEHIDEILQSARMSGYLYLRTRWEALPGEPLPIDDDTEVDDWLPKFLVLQGSGIFLYSSSIDLSPQDSTLLSDVVEVGAMPCLTRDNGDTRYCFFISTRHGLRYECSSASKIQVDSWLASLPNHSDLQSNCTAPDELTNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39507" PGL_stop="43138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39507" e_stop="39644"/>
            <exon e_start="40807" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41642" e_stop="41809"/>
            <exon e_start="41901" e_stop="42013"/>
            <exon e_start="42110" e_stop="42506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39507" e_stop="39644" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40807" e_stop="40941" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41642" e_stop="41809" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="42013" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.970">
            <gDNA_exon_boundary e_start="42110" e_stop="42506" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39507" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39508" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39511" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39511" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39512" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39515" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39516" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39516" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39516" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39516" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39518" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39518" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39520" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39520" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39521" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39523" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39523" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39523" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39524" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39524" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39526" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39527" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39529" stop="39644"/>
              <exon start="40807" stop="40844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39530" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39535" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39536" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39544" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39544" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39544" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39544" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39547" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39552" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39553" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39553" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39561" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39567" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39624" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40818" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40826" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40862" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40867" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40868" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40879" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41407" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41407" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41418" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41809"/>
              <exon start="41901" stop="41986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41686" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41729" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41772" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41775" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="42013"/>
              <exon start="42110" stop="42446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41989" stop="42013"/>
              <exon start="42110" stop="42429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42007" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGATGCATCATGAAGTACTTCTTTCAATGTTAAAAC</gDNA_template>
            <first_frame> L  S  I  T  S  Q  F  F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F  I  I  L  V  P  I  Q  *  S  I  A  T  I  G  R  D  A  S  *  S  T  S  F  N  V  K   </first_frame>
            <second_frame>  S  L  *  L  H  N  F  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N  S  L  F  L  F  Q  Y  N  D  L  *  Q  Q  L  V  G  M  H  H  E  V  L  L  S  M  L  K  </second_frame>
            <third_frame>   L  Y  N  F  T  I  F  L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  H  Y  S  C  S  N  T  M  I  Y  S  N  N  W  *  G  C  I  M  K  Y  F  F  Q  C  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39509" stop="39644"/>
                    <exon start="40807" stop="40941"/>
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                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNFTIFLTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
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        </three_phase_translation>
      </AGS_information>
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          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
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            <gDNA_exon_coordinates>
              <exon start="39553" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39561" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="41908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39567" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39624" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40818" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40826" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40862" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40867" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40868" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40879" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40892" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42462"/>
              <exon start="43123" stop="43138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41418" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41809"/>
              <exon start="41901" stop="41986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41686" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41729" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41772" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41775" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="42013"/>
              <exon start="42110" stop="42446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41989" stop="42013"/>
              <exon start="42110" stop="42429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42007" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACA : TATTAACAGGCAAAAA</gDNA_template>
            <first_frame> L  S  I  T  S  Q  F  F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F  I  I  L  V  P  I  Q  *  S  I  A  T  :  Y  *  Q  A  K  </first_frame>
            <second_frame>  S  L  *  L  H  N  F  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N  S  L  F  L  F  Q  Y  N  D  L  *  Q  H :   I  N  R  Q  K </second_frame>
            <third_frame>   L  Y  N  F  T  I  F  L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  H  Y  S  C  S  N  T  M  I  Y  S  N   : I  L  T  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39509" stop="39644"/>
                    <exon start="40807" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41642" stop="41809"/>
                    <exon start="41901" stop="42013"/>
                    <exon start="42110" stop="42233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNFTIFLTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39507" e_stop="39644"/>
            <exon e_start="40807" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41642" e_stop="41809"/>
            <exon e_start="41901" e_stop="42013"/>
            <exon e_start="42110" e_stop="42425"/>
            <exon e_start="43123" e_stop="43138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="0.984"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39507" e_stop="39644" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40807" e_stop="40941" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41642" e_stop="41809" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="42013" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="42110" e_stop="42425" e_length="316"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="42426" i_stop="43122" i_length="697"/>
          </intron>
          <exon e_serial="8" e_score="0.562">
            <gDNA_exon_boundary e_start="43123" e_stop="43138" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39507" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
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          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATT : TATTAACAGGCAAAAA</gDNA_template>
            <first_frame> L  S  I  T  S  Q  F  F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F :   I  N  R  Q  K </first_frame>
            <second_frame>  S  L  *  L  H  N  F  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N   : L  L  T  G  K   </second_frame>
            <third_frame>   L  Y  N  F  T  I  F  L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  :  Y  *  Q  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39509" stop="39644"/>
                    <exon start="40807" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41642" stop="41809"/>
                    <exon start="41901" stop="42013"/>
                    <exon start="42110" stop="42233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNFTIFLTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40800" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41642" e_stop="41809"/>
            <exon e_start="41901" e_stop="42013"/>
            <exon e_start="42110" e_stop="42506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40800" e_stop="40941" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41642" e_stop="41809" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="42013" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="42110" e_stop="42506" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40800" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40818" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40826" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40862" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40867" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40868" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40879" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41407" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41407" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41418" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41809"/>
              <exon start="41901" stop="41986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41686" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41729" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41772" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41775" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="42013"/>
              <exon start="42110" stop="42446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41989" stop="42013"/>
              <exon start="42110" stop="42429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42007" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGATGCATCATGAAGTACTTCTTTCAATGTTAAAAC</gDNA_template>
            <first_frame> V  A  G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  H  Y  S  C  S  N  T  M  I  Y  S  N  N  W  *  G  C  I  M  K  Y  F  F  Q  C  *  N </first_frame>
            <second_frame>  L  Q  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F  I  I  L  V  P  I  Q  *  S  I  A  T  I  G  R  D  A  S  *  S  T  S  F  N  V  K   </second_frame>
            <third_frame>   C  R  R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N  S  L  F  L  F  Q  Y  N  D  L  *  Q  Q  L  V  G  M  H  H  E  V  L  L  S  M  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40800" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41642" stop="41809"/>
                    <exon start="41901" stop="42013"/>
                    <exon start="42110" stop="42233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="39528" e_stop="39644"/>
            <exon e_start="40807" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41635" e_stop="41809"/>
            <exon e_start="41901" e_stop="42013"/>
            <exon e_start="42110" e_stop="42456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39528" e_stop="39644" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40807" e_stop="40941" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41454" i_stop="41634" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41635" e_stop="41809" e_length="175"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="42013" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42110" e_stop="42456" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39528" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41635" stop="41809"/>
              <exon start="41901" stop="41945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39529" stop="39644"/>
              <exon start="40807" stop="40844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39567" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40818" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41809"/>
              <exon start="41901" stop="41986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41686" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41729" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41772" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41775" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="42013"/>
              <exon start="42110" stop="42446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41925" stop="42013"/>
              <exon start="42110" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41989" stop="42013"/>
              <exon start="42110" stop="42429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42007" stop="42013"/>
              <exon start="42110" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATA</gDNA_template>
            <first_frame> F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  H  Y  S  C  S  N  T  M  I  Y  </first_frame>
            <second_frame>  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F  I  I  L  V  P  I  Q  *  S  I </second_frame>
            <third_frame>   L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N  S  L  F  L  F  Q  Y  N  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41636" stop="41809"/>
                    <exon start="41901" stop="42013"/>
                    <exon start="42110" stop="42233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39530" stop="39644"/>
                    <exon start="40807" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41635" stop="41667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISDFRNRITV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49700" PGL_stop="50150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49700" e_stop="50150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49700" e_stop="50150" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49700" stop="50150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49930" stop="50148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAAAA</gDNA_template>
            <first_frame> C  P  F  C  S  S  P  S  S  *  P  P  S  *  K  F  L  K  I  L  S  A  Q  L  S  K  R  Q  K  G  A  N  F  H  Y  Y  F  L  Y  N  R  V  F  F  F  F  F  I  S  Y  H  T  P  I  K  A  W  T  *  E  S  L  F  Q  T  *  Q  *  Q  K  K  N  Q  I  F  F  L  I  F  G  I  L  F  H  Q  N  S  N  L  V  I  *  N  *  G  L  V  S  F  L  I  V  L  *  Y  N  M  S  K  S  I  L  V  T  G  G  A  G  Y  I  G  S  H  T  V  L  Q  L  L  L  G  G  Y  K  T  V  V  I  D  N  L  D  N  S  S  E  I  A  V  K  </first_frame>
            <second_frame>  V  P  F  V  L  L  H  L  L  S  L  P  L  K  N  S  *  K  F  F  Q  P  N  *  V  K  G  K  K  V  Q  I  F  I  I  I  F  Y  I  T  V  F  F  F  F  F  L  Y  H  I  I  H  L  *  K  L  G  L  R  S  L  C  F  K  L  D  N  N  K  K  K  I  R  F  F  S  *  F  L  E  F  F  F  T  K  T  Q  I  L  L  Y  K  I  K  G  *  F  L  F  *  L  F  Y  S  T  I  C  R  R  V  Y  L  *  Q  G  E  Q  G  I  L  G  V  T  Q  C  C  N  C  C  L  V  V  I  R  L  W  *  L  I  I  W  I  I  L  L  K  L  L  *  K </second_frame>
            <third_frame>   S  L  L  F  F  S  I  F  L  A  S  L  L  K  I  L  E  N  S  F  S  P  I  K  *  K  A  K  R  C  K  F  S  L  L  F  F  I  *  P  C  F  F  F  F  F  Y  I  I  S  Y  T  Y  K  S  L  D  L  G  V  F  V  S  N  L  T  I  T  K  K  K  S  D  F  F  L  D  F  W  N  S  F  S  P  K  L  K  S  C  Y  I  K  L  R  V  S  F  F  F  N  C  F  I  V  Q  Y  V  E  E  Y  T  C  D  R  G  S  R  V  Y  W  E  S  H  S  V  A  I  V  A  W  W  L  *  D  C  G  D  *  *  F  G  *  F  F  *  N  C  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49819" stop="50100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCFFFFFYIISYTYKSLDLGVFVSNLTITKKKSDFFLDFWNSFSPKLKSCYIKLRVSFFFNCFIVQYVEEYTCDRGSRVYWESHSVAIVAWWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51576" PGL_stop="61359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51576" e_stop="51603"/>
            <exon e_start="51859" e_stop="51994"/>
            <exon e_start="52076" e_stop="52177"/>
            <exon e_start="52284" e_stop="52511"/>
            <exon e_start="52715" e_stop="52793"/>
            <exon e_start="52907" e_stop="52989"/>
            <exon e_start="53395" e_stop="53486"/>
            <exon e_start="53610" e_stop="54074"/>
            <exon e_start="56661" e_stop="56682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51576" e_stop="51603" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51859" e_stop="51994" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.783">
            <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52076" e_stop="52177" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.903">
            <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52284" e_stop="52511" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52715" e_stop="52793" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52907" e_stop="52989" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53395" e_stop="53486" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53610" e_stop="54074" e_length="465"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54075" i_stop="56660" i_length="2586"/>
          </intron>
          <exon e_serial="9" e_score="0.864">
            <gDNA_exon_boundary e_start="56661" e_stop="56682" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51576" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51592" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51599" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51860" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51883" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51898" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52385" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52389" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53412" stop="53486"/>
              <exon start="53610" stop="54074"/>
              <exon start="56661" stop="56682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53421" stop="53486"/>
              <exon start="53610" stop="54056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGAGGAGATTTTCAGGTCTAACAA : ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG : CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG : CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG : GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG : GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG : AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA : GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTA : AAAGAAGAAAAAATAAAAAAAA</gDNA_template>
            <first_frame> Q  L  R  R  F  S  G  L  T   : N  L  M  L  L  F  I  L  L  D  *  R  R  L  V  K  V  S  R  N  L  *  C  T  M  T  T  T  L  L  E  Q  L  P  S  W  K  S  W  Q  L  M  D  A  K  S :   L  C  F  H  R  Q  L  L  F  M  V  G  Q  K  W  F  L  V  L  R  S  S  P  *  V  L  Q  I  L  M  D  G  Q  S :   S  S  L  K  K  Y  A  V  M  Y  K  T  R  T  L  N  G  K  S  Y  C  C  G  T  S  I  L  L  V  L  I  Q  V  A  E  L  V  K  I  R  E  E  F  R  T  T  L  C  H  L  F  N  K  L  L  L  A  E  E  K  S  *  Q  F  M  E  L  I  M  E  R  R  M  V  Q  G :   S  V  I  T  F  M  L  *  I  *  Q  T  D  T  L  L  P  C  R  S  Y  L  I  L  P  *  :  A  V  K  C  T  T  W  E  L  E  K  E  L  Q  S  L  K  W  W  P  H  L  R  R  L  L  E  R :   K  F  Q  W  L  C  L  V  D  A  L  E  M  L  K  L  Y  M  L  L  L  R  K  Q  N  A  N  *  S  G   : R  R  N  M  A  S  K  R  C  V  G  I  S  G  T  G  L  R  R  I  P  M  A  M  K  E  L  Q  N  L  I  T  V  T  E  V  Y  F  N  C  I  I  S  S  Y  S  R  Y  V  P  V  A  A  S  C  S  K  G  R  F  N  V  *  L  *  G  Y  *  M  A  L  *  C  L  Y  C  L  T  Y  I  S  F  R  M  *  L  E  F  Q  *  V  S  S  *  I  I  K  G  K  I  *  E  S  *  *  I  I  F  K  H  I  V  V  F  H  L  F  F  H  S  F  F  V  C  I  I  K  *  L  S  A  F  E  S  R  F  S  T  S  S  L  I  S  T  S  L  R  L  R  R  N  R  L  V  T   : K  R  R  K  N  K  K   </first_frame>
            <second_frame>  N  *  G  D  F  Q  V  *  Q  :  I  *  C  C  Y  S  F  C  W  T  K  G  G  W  *  K  C  R  E  T  S  D  V  L  *  Q  Q  P  Y  W  N  N  Y  P  L  G  S  H  G  S  S  W  M  Q  K   : A  C  V  F  I  V  S  Y  C  L  W  L  A  K  S  G  S  L  Y  *  G  V  P  P  E  C  C  K  S  L  W  T  D  K   : A  L  H  *  R  N  M  P  *  C  T  K  R  G  L  *  M  E  N  H  I  A  A  V  L  Q  S  C  W  C  S  S  K  W  P  N  W  *  R  S  A  R  N  S  E  Q  P  Y  A  I  C  S  T  S  C  C  W  Q  K  K  R  A  D  S  L  W  N  *  L  W  N  E  G  W  Y  R   : G  P  *  L  H  S  C  Y  R  F  S  R  R  T  H  C  C  L  A  E  A  I  *  S  F  H  R :   L  *  S  V  Q  L  G  N  W  K  R  N  F  S  P  *  N  G  G  R  I  *  E  G  F  W  K   : E  N  S  N  G  Y  V  W  S  T  P  W  R  C  *  N  C  I  C  C  Y  *  E  S  R  T  R  I  E  V  E  :  G  E  I  W  H  R  R  D  V  *  G  S  V  E  L  G  *  E  E  S  L  W  L  *  R  N  S  R  I  *  *  L  S  L  K  S  T  S  T  A  *  Y  R  H  I  V  D  T  F  L  L  L  H  R  V  R  R  D  D  S  T  Y  S  C  R  A  I  R  W  H  Y  N  V  Y  I  V  *  L  I  *  V  S  E  C  N  W  S  F  N  E  L  V  V  R  L  *  K  G  K  S  K  K  V  D  E  *  Y  L  S  I  *  *  Y  F  I  C  S  F  I  P  F  L  F  V  *  *  N  N  Y  R  H  L  N  L  V  L  A  H  H  H  *  F  Q  L  V  *  D  *  D  V  I  D  *  *  L  :  K  E  E  K  I  K  K  </second_frame>
            <third_frame>   I  E  E  I  F  R  S  N  K :   F  D  A  V  I  H  F  A  G  L  K  A  V  G  E  S  V  E  K  P  L  M  Y  Y  D  N  N  L  I  G  T  I  T  L  L  E  V  M  A  A  H  G  C  K  K  :  L  V  F  S  S  S  A  T  V  Y  G  W  P  K  V  V  P  C  T  E  E  F  P  L  S  A  A  N  P  Y  G  R  T  K  :  L  F  I  E  E  I  C  R  D  V  Q  N  A  D  S  E  W  K  I  I  L  L  R  Y  F  N  P  V  G  A  H  P  S  G  R  I  G  E  D  P  R  G  I  P  N  N  L  M  P  F  V  Q  Q  V  A  V  G  R  R  K  E  L  T  V  Y  G  T  D  Y  G  T  K  D  G  T  G  :  V  R  D  Y  I  H  V  I  D  L  A  D  G  H  I  A  A  L  Q  K  L  S  D  P  S  I   : G  C  E  V  Y  N  L  G  T  G  K  G  T  S  V  L  E  M  V  A  A  F  E  K  A  S  G  K  :  K  I  P  M  V  M  S  G  R  R  P  G  D  A  E  I  V  Y  A  A  T  E  K  A  E  R  E  L  K  W  K :   A  K  Y  G  I  E  E  M  C  R  D  Q  W  N  W  A  K  K  N  P  Y  G  Y  E  G  T  P  E  S  N  N  C  H  *  S  L  L  Q  L  H  N  I  V  I  *  S  I  R  S  C  C  C  I  V  F  E  G  T  I  Q  R  I  V  V  G  L  L  D  G  I  I  M  F  I  L  S  N  L  Y  K  F  Q  N  V  I  G  V  S  M  S  *  *  L  D  Y  K  R  E  N  L  R  K  L  M  N  N  I  *  A  Y  S  S  I  S  F  V  L  S  F  L  F  C  L  Y  N  K  I  T  I  G  I  *  I  S  F  *  H  I  I  I  D  F  N  *  F  E  I  E  T  *  S  I  S  N  * :   K  K  K  K  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51578" stop="51603"/>
                    <exon start="51859" stop="51994"/>
                    <exon start="52076" stop="52177"/>
                    <exon start="52284" stop="52511"/>
                    <exon start="52715" stop="52793"/>
                    <exon start="52907" stop="52989"/>
                    <exon start="53395" stop="53486"/>
                    <exon start="53610" stop="53712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEEIFRSNKFDAVIHFAGLKAVGESVEKPLMYYDNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKVVPCTEEFPLSAANPYGRTKLFIEEICRDVQNADSEWKIILLRYFNPVGAHPSGRIGEDPRGIPNNLMPFVQQVAVGRRKELTVYGTDYGTKDGTGVRDYIHVIDLADGHIAALQKLSDPSIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPMVMSGRRPGDAEIVYAATEKAERELKWKAKYGIEEMCRDQWNWAKKNPYGYEGTPESNNCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51576" e_stop="51603"/>
            <exon e_start="51859" e_stop="51994"/>
            <exon e_start="52076" e_stop="52177"/>
            <exon e_start="52284" e_stop="52511"/>
            <exon e_start="52715" e_stop="52793"/>
            <exon e_start="52907" e_stop="52989"/>
            <exon e_start="53395" e_stop="53486"/>
            <exon e_start="53610" e_stop="54075"/>
            <exon e_start="56661" e_stop="56682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51576" e_stop="51603" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51859" e_stop="51994" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.783">
            <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52076" e_stop="52177" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.903">
            <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52284" e_stop="52511" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52715" e_stop="52793" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52907" e_stop="52989" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53395" e_stop="53486" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53610" e_stop="54075" e_length="466"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54076" i_stop="56660" i_length="2585"/>
          </intron>
          <exon e_serial="9" e_score="0.864">
            <gDNA_exon_boundary e_start="56661" e_stop="56682" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51576" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51592" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51599" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51860" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51883" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51898" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52385" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52389" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="53928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54075"/>
              <exon start="56661" stop="56682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54075"/>
              <exon start="56661" stop="56682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="54054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53413" stop="53486"/>
              <exon start="53610" stop="53910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53421" stop="53486"/>
              <exon start="53610" stop="54056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGAGGAGATTTTCAGGTCTAACAA : ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG : CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG : CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG : GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG : GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG : AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA : GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAA : AAAGAAGAAAAAATAAAAAAAA</gDNA_template>
            <first_frame> Q  L  R  R  F  S  G  L  T   : N  L  M  L  L  F  I  L  L  D  *  R  R  L  V  K  V  S  R  N  L  *  C  T  M  T  T  T  L  L  E  Q  L  P  S  W  K  S  W  Q  L  M  D  A  K  S :   L  C  F  H  R  Q  L  L  F  M  V  G  Q  K  W  F  L  V  L  R  S  S  P  *  V  L  Q  I  L  M  D  G  Q  S :   S  S  L  K  K  Y  A  V  M  Y  K  T  R  T  L  N  G  K  S  Y  C  C  G  T  S  I  L  L  V  L  I  Q  V  A  E  L  V  K  I  R  E  E  F  R  T  T  L  C  H  L  F  N  K  L  L  L  A  E  E  K  S  *  Q  F  M  E  L  I  M  E  R  R  M  V  Q  G :   S  V  I  T  F  M  L  *  I  *  Q  T  D  T  L  L  P  C  R  S  Y  L  I  L  P  *  :  A  V  K  C  T  T  W  E  L  E  K  E  L  Q  S  L  K  W  W  P  H  L  R  R  L  L  E  R :   K  F  Q  W  L  C  L  V  D  A  L  E  M  L  K  L  Y  M  L  L  L  R  K  Q  N  A  N  *  S  G   : R  R  N  M  A  S  K  R  C  V  G  I  S  G  T  G  L  R  R  I  P  M  A  M  K  E  L  Q  N  L  I  T  V  T  E  V  Y  F  N  C  I  I  S  S  Y  S  R  Y  V  P  V  A  A  S  C  S  K  G  R  F  N  V  *  L  *  G  Y  *  M  A  L  *  C  L  Y  C  L  T  Y  I  S  F  R  M  *  L  E  F  Q  *  V  S  S  *  I  I  K  G  K  I  *  E  S  *  *  I  I  F  K  H  I  V  V  F  H  L  F  F  H  S  F  F  V  C  I  I  K  *  L  S  A  F  E  S  R  F  S  T  S  S  L  I  S  T  S  L  R  L  R  R  N  R  L  V  T  K :   K  K  K  K  *  K  K </first_frame>
            <second_frame>  N  *  G  D  F  Q  V  *  Q  :  I  *  C  C  Y  S  F  C  W  T  K  G  G  W  *  K  C  R  E  T  S  D  V  L  *  Q  Q  P  Y  W  N  N  Y  P  L  G  S  H  G  S  S  W  M  Q  K   : A  C  V  F  I  V  S  Y  C  L  W  L  A  K  S  G  S  L  Y  *  G  V  P  P  E  C  C  K  S  L  W  T  D  K   : A  L  H  *  R  N  M  P  *  C  T  K  R  G  L  *  M  E  N  H  I  A  A  V  L  Q  S  C  W  C  S  S  K  W  P  N  W  *  R  S  A  R  N  S  E  Q  P  Y  A  I  C  S  T  S  C  C  W  Q  K  K  R  A  D  S  L  W  N  *  L  W  N  E  G  W  Y  R   : G  P  *  L  H  S  C  Y  R  F  S  R  R  T  H  C  C  L  A  E  A  I  *  S  F  H  R :   L  *  S  V  Q  L  G  N  W  K  R  N  F  S  P  *  N  G  G  R  I  *  E  G  F  W  K   : E  N  S  N  G  Y  V  W  S  T  P  W  R  C  *  N  C  I  C  C  Y  *  E  S  R  T  R  I  E  V  E  :  G  E  I  W  H  R  R  D  V  *  G  S  V  E  L  G  *  E  E  S  L  W  L  *  R  N  S  R  I  *  *  L  S  L  K  S  T  S  T  A  *  Y  R  H  I  V  D  T  F  L  L  L  H  R  V  R  R  D  D  S  T  Y  S  C  R  A  I  R  W  H  Y  N  V  Y  I  V  *  L  I  *  V  S  E  C  N  W  S  F  N  E  L  V  V  R  L  *  K  G  K  S  K  K  V  D  E  *  Y  L  S  I  *  *  Y  F  I  C  S  F  I  P  F  L  F  V  *  *  N  N  Y  R  H  L  N  L  V  L  A  H  H  H  *  F  Q  L  V  *  D  *  D  V  I  D  *  *  L   : K  R  R  K  N  K  K   </second_frame>
            <third_frame>   I  E  E  I  F  R  S  N  K :   F  D  A  V  I  H  F  A  G  L  K  A  V  G  E  S  V  E  K  P  L  M  Y  Y  D  N  N  L  I  G  T  I  T  L  L  E  V  M  A  A  H  G  C  K  K  :  L  V  F  S  S  S  A  T  V  Y  G  W  P  K  V  V  P  C  T  E  E  F  P  L  S  A  A  N  P  Y  G  R  T  K  :  L  F  I  E  E  I  C  R  D  V  Q  N  A  D  S  E  W  K  I  I  L  L  R  Y  F  N  P  V  G  A  H  P  S  G  R  I  G  E  D  P  R  G  I  P  N  N  L  M  P  F  V  Q  Q  V  A  V  G  R  R  K  E  L  T  V  Y  G  T  D  Y  G  T  K  D  G  T  G  :  V  R  D  Y  I  H  V  I  D  L  A  D  G  H  I  A  A  L  Q  K  L  S  D  P  S  I   : G  C  E  V  Y  N  L  G  T  G  K  G  T  S  V  L  E  M  V  A  A  F  E  K  A  S  G  K  :  K  I  P  M  V  M  S  G  R  R  P  G  D  A  E  I  V  Y  A  A  T  E  K  A  E  R  E  L  K  W  K :   A  K  Y  G  I  E  E  M  C  R  D  Q  W  N  W  A  K  K  N  P  Y  G  Y  E  G  T  P  E  S  N  N  C  H  *  S  L  L  Q  L  H  N  I  V  I  *  S  I  R  S  C  C  C  I  V  F  E  G  T  I  Q  R  I  V  V  G  L  L  D  G  I  I  M  F  I  L  S  N  L  Y  K  F  Q  N  V  I  G  V  S  M  S  *  *  L  D  Y  K  R  E  N  L  R  K  L  M  N  N  I  *  A  Y  S  S  I  S  F  V  L  S  F  L  F  C  L  Y  N  K  I  T  I  G  I  *  I  S  F  *  H  I  I  I  D  F  N  *  F  E  I  E  T  *  S  I  S  N  *  :  K  E  E  K  I  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51578" stop="51603"/>
                    <exon start="51859" stop="51994"/>
                    <exon start="52076" stop="52177"/>
                    <exon start="52284" stop="52511"/>
                    <exon start="52715" stop="52793"/>
                    <exon start="52907" stop="52989"/>
                    <exon start="53395" stop="53486"/>
                    <exon start="53610" stop="53712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEEIFRSNKFDAVIHFAGLKAVGESVEKPLMYYDNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKVVPCTEEFPLSAANPYGRTKLFIEEICRDVQNADSEWKIILLRYFNPVGAHPSGRIGEDPRGIPNNLMPFVQQVAVGRRKELTVYGTDYGTKDGTGVRDYIHVIDLADGHIAALQKLSDPSIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPMVMSGRRPGDAEIVYAATEKAERELKWKAKYGIEEMCRDQWNWAKKNPYGYEGTPESNNCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56633" e_stop="56874"/>
            <exon e_start="58643" e_stop="58725"/>
            <exon e_start="60060" e_stop="61359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56633" e_stop="56874" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58643" e_stop="58725" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="60060" e_stop="61359" e_length="1300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56633" stop="56874"/>
              <exon start="58643" stop="58725"/>
              <exon start="60060" stop="60565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56659" stop="56874"/>
              <exon start="58643" stop="58725"/>
              <exon start="60060" stop="60379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56874"/>
              <exon start="58643" stop="58725"/>
              <exon start="60060" stop="61359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56765" stop="56874"/>
              <exon start="58643" stop="58725"/>
              <exon start="60060" stop="60454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60537" stop="61293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60540" stop="61280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG : GGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG : GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTATAGAA</gDNA_template>
            <first_frame> G  R  E  K  N  I  P  T  K  E  R  R  K  N  K  K  N  N  K  G  E  L  Q  F  S  I  F  V  E  T  K  N  H  Q  L  L  *  K  I  E  N  N  S  *  D  N  I  V  P  P  P  S  P  G  P  A  E  L  F  G  R  W  V  L  E  N  L  R  K  W  L  P  A  M  T  L  L  Q  L  Q  R :   V  K  K  N  *  V  Y  *  S  Q  R  G  K  F  S  T  N  V  D  L  C  T  *  L  L  L  T   : G  K  M  L  L  I  N  D  L  W  L  P  V  W  F  R  A  S  T  S  *  S  V  T  S  K  K  N  G  R  E  V  K  L  L  L  L  H  G  G  D  I  S  N  L  S  Y  I  V  C  S  L  M  M  L  I  P  A  F  L  V  L  Y  I  N  L  H  P  Q  N  L  I  L  A  V  P  K  I  K  A  N  D  L  S  L  L  S  V  G  P  *  P  K  V  M  H  F  L  E  I  Y  N  W  I  S  T  Y  S  G  M  D  F  I  R  L  L  A  L  R  Q  P  F  K  L  F  D  M  W  L  Q  H  L  E  V  Q  V  S  G  *  L  V  I  P  *  G  L  Q  W  Q  C  L  L  A  K  P  W  Q  R  L  V  Y  F  *  M  H  F  C  L  I  R  H  S  C  R  P  Q  L  K  E  L  K  I  K  K  *  N  T  G  S  D  L  R  P  V  L  *  Q  L  D  L  L  L  L  P  S  I  K  T  *  I  I  N  L  E  I  H  L  L  H  Y  L  H  G  H  H  A  Y  M  *  I  H  R  I  L  F  A  Q  N  T  L  A  I  L  N  T  G  K  R  W  I  Q  W  E  Q  E  L  S  R  S  *  Q  P  N  T  H  L  V  V  L  S  *  I  S  W  G  R  S  V  M  S  H  C  T  *  F  H  Q  P  I  *  Q  *  I  *  L  L  R  Q  T  S  K  E  L  M  V  F  T  N  G  G  N  L  I  Y  L  S  S  P  R  N  T  S  L  H  E  *  *  Y  K  T  K  T  T  T  P  I  D  G  M  F  V  D  F  V  S  L  V  G  Y  I  Y  S  Y  Q  H  I  T  L  C  S  *  L  N  S  C  A  F  Y  *  C  *  S  F  F  T  D  A  L  S  S  L  V  T  F  D  S  S  F  I  R  S  C  F  Y  V  L  V  N  L  S  I  S  S  V  P  H  P  I  T  Y  C  *  V  L  R  I  E  I  V  H  I  L  L  I  V  L  L  I  I  F  L  L  *   </first_frame>
            <second_frame>  E  E  K  R  I  F  P  Q  K  K  E  E  K  I  K  K  I  I  K  G  N  F  N  L  A  Y  L  *  R  Q  K  T  I  N  C  C  K  K  S  K  T  T  V  E  T  T  S  S  H  L  L  L  Q  A  Q  L  N  F  L  E  G  G  F  L  K  I  L  E  N  G  Y  Q  Q  *  H  C  C  S  Y  K   : G  S  R  R  T  K  C  I  N  L  R  E  G  N  F  R  P  M  W  T  C  A  P  N  C  Y  *  L  :  G  K  C  C  S  S  T  I  C  G  C  Q  F  G  S  G  R  L  H  P  R  A  *  Q  A  R  K  T  E  G  K  S  S  S  C  S  S  M  V  E  T  F  P  I  *  V  I  S  C  A  H  *  *  C  *  F  L  H  F  W  C  Y  I  *  I  C  T  L  K  I  L  F  W  R  F  Q  R  *  K  P  T  I  C  H  C  F  P  W  D  L  N  Q  R  *  C  I  F  S  R  Y  T  I  G  Y  P  H  T  Q  E  W  T  S  S  D  F  S  L  *  D  S  H  S  S  C  S  T  C  G  C  N  I  W  K  F  K  Y  L  A  N  W  S  F  L  R  G  C  N  G  N  A  C  W  Q  N  H  G  K  D  W  C  I  F  R  C  I  F  V  *  S  A  I  L  V  G  P  N  *  K  N  *  R  S  K  S  E  T  R  D  Q  I  C  D  Q  C  Y  N  S  W  T  C  F  C  C  Q  A  *  K  R  E  *  S  I  W  R  Y  I  C  C  I  I  C  M  D  T  M  P  I  C  E  S  I  G  S  Y  L  R  R  I  H  W  L  F  *  T  P  G  K  D  G  Y  N  G  S  R  S  Y  R  E  A  S  N  P  T  L  T  W  W  S  C  L  E  F  H  G  E  G  V  *  *  A  I  A  P  N  S  I  S  Q  F  N  S  K  F  D  S  S  V  R  L  Q  R  S  S  W  Y  S  P  M  V  E  T  *  F  T  C  R  V  Q  E  T  P  V  Y  M  N  D  D  I  K  Q  R  P  L  H  R  *  M  V  C  L  S  I  L  Y  P  W  S  G  I  F  I  V  I  N  T  L  H  C  A  L  S  L  I  V  V  P  S  T  S  A  K  V  S  L  Q  M  H  C  H  L  L  L  P  S  T  P  V  L  F  V  H  V  S  M  F  W  *  I  Y  P  S  V  L  C  L  I  L  L  P  I  V  E  C  Y  E  L  K  L  C  I  Y  Y  S  L  Y  Y  *  *  Y  F  C  Y  R  </second_frame>
            <third_frame>   K  R  K  E  Y  S  H  K  R  K  K  K  K  *  K  K  *  *  R  G  T  S  I  *  H  I  C  R  D  K  K  P  S  I  V  V  K  N  R  K  Q  Q  L  R  Q  H  R  P  T  S  F  S  R  P  S  *  T  F  W  K  V  G  S  *  K  S  *  K  M  A  T  S  N  D  I  V  A  A  T  K  :  G  Q  E  E  L  S  V  L  I  S  E  R  E  I  F  D  Q  C  G  P  V  H  L  T  A  I  D  W :   E  N  V  A  H  Q  R  S  V  A  A  S  L  V  Q  G  V  Y  I  L  E  R  D  K  Q  E  K  R  K  G  S  Q  A  L  A  P  P  W  W  R  H  F  Q  F  E  L  Y  R  V  L  I  D  D  V  D  S  C  I  F  G  A  I  Y  K  F  A  P  S  K  S  Y  F  G  G  S  K  D  K  S  Q  R  F  V  I  A  F  R  G  T  L  T  K  G  D  A  F  S  R  D  I  Q  L  D  I  H  I  L  R  N  G  L  H  Q  T  S  R  F  E  T  A  I  Q  A  V  R  H  V  V  A  T  F  G  S  S  S  I  W  L  T  G  H  S  L  G  A  A  M  A  M  L  A  G  K  T  M  A  K  T  G  V  F  L  D  A  F  L  F  N  P  P  F  L  S  A  P  I  E  R  I  K  D  Q  K  V  K  H  G  I  R  F  A  T  S  V  I  T  A  G  L  A  F  A  A  K  H  K  N  V  N  N  Q  S  G  D  T  F  V  A  L  S  A  W  T  P  C  L  Y  V  N  P  S  D  P  I  C  A  E  Y  I  G  Y  F  E  H  R  E  K  M  D  T  M  G  A  G  V  I  E  K  L  A  T  Q  H  S  L  G  G  L  V  L  N  F  M  G  K  E  C  D  E  P  L  H  L  I  P  S  A  N  L  T  V  N  L  T  P  P  S  D  F  K  G  A  H  G  I  H  Q  W  W  K  P  D  L  L  V  E  S  K  K  H  Q  F  T  *  M  M  I  *  N  K  D  H  Y  T  D  R  W  Y  V  C  R  F  C  I  P  G  R  V  Y  L  *  L  S  T  H  Y  I  V  L  L  A  *  *  L  C  L  L  L  V  L  K  F  L  Y  R  C  I  V  I  S  C  Y  L  R  L  Q  F  Y  S  F  M  F  L  C  F  G  E  S  I  H  Q  F  C  A  S  S  Y  Y  L  L  L  S  V  T  N  *  N  C  A  Y  T  T  H  C  I  I  D  N  I  F  V  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56836" stop="56874"/>
                    <exon start="58643" stop="58725"/>
                    <exon start="60060" stop="61032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMATSNDIVAATKGQEELSVLISEREIFDQCGPVHLTAIDWENVAHQRSVAASLVQGVYILERDKQEKRKGSQALAPPWWRHFQFELYRVLIDDVDSCIFGAIYKFAPSKSYFGGSKDKSQRFVIAFRGTLTKGDAFSRDIQLDIHILRNGLHQTSRFETAIQAVRHVVATFGSSSIWLTGHSLGAAMAMLAGKTMAKTGVFLDAFLFNPPFLSAPIERIKDQKVKHGIRFATSVITAGLAFAAKHKNVNNQSGDTFVALSAWTPCLYVNPSDPICAEYIGYFEHREKMDTMGAGVIEKLATQHSLGGLVLNFMGKECDEPLHLIPSANLTVNLTPPSDFKGAHGIHQWWKPDLLVESKKHQFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="61564" PGL_stop="60840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61564" e_stop="61558"/>
            <exon e_start="61284" e_stop="60840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.946" e_score="0.429"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.429">
            <gDNA_exon_boundary e_start="61564" e_stop="61558" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.946">
            <gDNA_intron_boundary i_start="61557" i_stop="61285" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="61284" e_stop="60840" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61564" stop="61558"/>
              <exon start="61284" stop="60840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61564" stop="61558"/>
              <exon start="61284" stop="60857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232677" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATGT : GTAATAGGATGAGGCACAGAACTGATGGATAGATTCACCAAAACATAGAAACATGAACGAATAAAACTGGAGTCGAAGGTAACAAGAGATGACAATGCATCTGTAAAGAAACTTTAGCACTAGTAGAAGGCACAACTATTAAGCTAAGAGCACAATGTAATGTGTTGATAACTATAAATATACCCGACCAGGGATACAAAATCGACAAACATACCATCTATCGGTGTAGTGGTCTTTGTTTTATATCATCATTCATGTAAACTGGTGTTTCTTGGACTCGACAAGTAAATCAGGTTTCCACCATTGGTGAATACCATGAGCTCCTTTGAAGTCTGACGGAGGAGTCAAATTTACTGTTAAATTGGCTGATGGAATTAGGTGCAATGGCTCATCACACTCCTTCCCCATGAAATTCAAGACAAGACCACCAAGTGAGTGTTGGGTT</gDNA_template>
            <first_frame> W  M   : C  N  R  M  R  H  R  T  D  G  *  I  H  Q  N  I  E  T  *  T  N  K  T  G  V  E  G  N  K  R  *  Q  C  I  C  K  E  T  L  A  L  V  E  G  T  T  I  K  L  R  A  Q  C  N  V  L  I  T  I  N  I  P  D  Q  G  Y  K  I  D  K  H  T  I  Y  R  C  S  G  L  C  F  I  S  S  F  M  *  T  G  V  S  W  T  R  Q  V  N  Q  V  S  T  I  G  E  Y  H  E  L  L  *  S  L  T  E  E  S  N  L  L  L  N  W  L  M  E  L  G  A  M  A  H  H  T  P  S  P  *  N  S  R  Q  D  H  Q  V  S  V  G   </first_frame>
            <second_frame>  G  C  :  V  I  G  *  G  T  E  L  M  D  R  F  T  K  T  *  K  H  E  R  I  K  L  E  S  K  V  T  R  D  D  N  A  S  V  K  K  L  *  H  *  *  K  A  Q  L  L  S  *  E  H  N  V  M  C  *  *  L  *  I  Y  P  T  R  D  T  K  S  T  N  I  P  S  I  G  V  V  V  F  V  L  Y  H  H  S  C  K  L  V  F  L  G  L  D  K  *  I  R  F  P  P  L  V  N  T  M  S  S  F  E  V  *  R  R  S  Q  I  Y  C  *  I  G  *  W  N  *  V  Q  W  L  I  T  L  L  P  H  E  I  Q  D  K  T  T  K  *  V  L  G  </second_frame>
            <third_frame>   D  V :   *  *  D  E  A  Q  N  *  W  I  D  S  P  K  H  R  N  M  N  E  *  N  W  S  R  R  *  Q  E  M  T  M  H  L  *  R  N  F  S  T  S  R  R  H  N  Y  *  A  K  S  T  M  *  C  V  D  N  Y  K  Y  T  R  P  G  I  Q  N  R  Q  T  Y  H  L  S  V  *  W  S  L  F  Y  I  I  I  H  V  N  W  C  F  L  D  S  T  S  K  S  G  F  H  H  W  *  I  P  *  A  P  L  K  S  D  G  G  V  K  F  T  V  K  L  A  D  G  I  R  C  N  G  S  S  H  S  F  P  M  K  F  K  T  R  P  P  S  E  C  W  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="64610" PGL_stop="65926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64610" e_stop="64646"/>
            <exon e_start="65169" e_stop="65926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="0.459"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.459">
            <gDNA_exon_boundary e_start="64610" e_stop="64646" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64647" i_stop="65168" i_length="522"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="65169" e_stop="65926" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64610" stop="64646"/>
              <exon start="65169" stop="65926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTCACATTCCTCTTAAAATCCTTCATTTTTATG : TAATAAGAAAAACATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGATTTAGGTTTGAAAAGAGTGAAGTAAAGGATGAAGATGATGATGAAGATGAAGATTAAGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCT</gDNA_template>
            <first_frame> F  F  H  I  P  L  K  I  L  H  F  Y   : V  I  R  K  T  F  F  L  Q  L  L  *  K  S  L  P  N  T  K  I  H  *  T  K  K  I  I  I  K  T  K  K  T  N  N  L  R  A  I  T  F  E  R  I  F  F  *  L  N  K  I  T  N  S  G  K  P  *  Q  I  H  H  *  Q  K  Y  Q  F  Y  I  Q  L  Y  S  P  H  D  V  *  K  N  G  A  F  *  P  D  P  P  F  P  I  S  T  P  L  P  Y  *  I  R  P  E  T  H  S  A  H  P  S  P  S  A  H  P  H  S  P  V  V  H  S  P  L  T  E  T  P  S  P  K  T  S  P  P  Y  T  E  S  D  P  N  *  F  F  R  R  V  Q  T  *  T  R  F  D  Y  P  N  K  V  T  A  G  N  C  H  S  E  Q  I  H  R  D  L  G  F  R  L  R  R  I  E  K  M  *  S  S  R  C  R  S  R  R  R  K  R  E  A  E  W  S  *  R  *  *  W  G  I  *  V  *  K  E  *  S  K  G  *  R  *  *  *  R  *  R  L  R  K  L  L  Q  L  Y  M  K  L  N  L  Y  V  H  L  E  V  Y  E  I  *  P  F  L  F  S </first_frame>
            <second_frame>  S  F  T  F  L  L  K  S  F  I  F  M  :  *  *  E  K  H  F  F  Y  N  Y  S  E  N  H  Y  Q  T  Q  K  Y  T  K  P  K  K  *  *  L  K  L  K  K  L  I  I  C  E  L  L  H  L  S  G  F  F  F  S  *  I  K  *  L  T  V  E  S  R  N  R  S  I  T  D  R  N  I  N  S  T  F  S  F  T  L  H  M  M  C  K  K  M  E  H  S  N  P  T  R  H  F  Q  S  R  L  H  F  H  T  R  S  D  P  K  P  T  Q  P  I  R  H  R  R  P  T  H  T  L  R  L  S  I  H  R  *  R  K  R  L  H  R  K  R  R  R  H  I  L  S  P  T  R  I  N  F  S  G  G  Y  K  H  E  P  D  S  I  T  R  I  K  *  L  Q  G  T  V  I  V  S  K  F  I  V  I  W  V  F  D  *  D  V  L  R  K  C  E  V  H  G  A  V  R  G  G  E  R  G  K  L  N  G  V  N  G  D  N  G  G  F  R  F  E  K  S  E  V  K  D  E  D  D  D  E  D  E  D  *  E  N  C  C  N  Y  T  *  S  *  I  C  T  S  T  W  R  F  T  R  F  N  H  F  Y  F   </second_frame>
            <third_frame>   L  S  H  S  S  *  N  P  S  F  L  C :   N  K  K  N  I  F  F  T  I  T  L  K  I  T  T  K  H  K  N  T  L  N  Q  K  N  N  N  *  N  *  K  N  *  *  F  A  S  Y  Y  I  *  A  D  F  F  L  V  K  *  N  N  *  Q  W  K  A  V  T  D  P  S  L  T  E  I  S  I  L  H  S  A  L  L  S  T  *  C  V  K  K  W  S  I  L  T  R  P  A  I  S  N  L  D  S  T  S  I  L  D  P  T  R  N  P  L  S  P  S  V  T  V  G  P  P  T  L  S  G  C  P  F  T  V  N  G  N  A  F  T  E  N  V  A  A  I  Y  *  V  R  P  E  L  I  F  P  A  G  T  N  M  N  P  I  R  L  P  E  *  S  N  C  R  E  L  S  *  *  A  N  S  S  *  F  G  F  S  I  E  T  Y  *  E  N  V  K  F  T  V  P  F  E  A  E  K  E  G  S  *  M  E  L  T  V  I  M  G  D  L  G  L  K  R  V  K  *  R  M  K  M  M  M  K  M  K  I  K  K  I  V  A  T  I  H  E  A  K  F  V  R  P  L  G  G  L  R  D  L  T  I  F  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65322" stop="65540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVESRNRSITDRNINSTFSFTLHMMCKKMEHSNPTRHFQSRLHFHTRSDPKPTQPIRHRRPTHTLRLSIHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="67524" PGL_stop="65170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65973" e_stop="65170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65973" e_stop="65170" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65972" stop="65299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65736" stop="65170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGGTTAAATCTCGTAAACCTCCAAGTGGACGTACAAATTTAGCTTCATGTATAGTTGCAACAATTTTCTTAATCTTCATCTTCATCATCATCTTCATCCTTTACTTCACTCTTTTCAAACCTAAATCCCCCATTATCACCGTTAACTCCATTCAGCTTCCCTCTTTCTCCGCCTCGAACGGCACCGTGAACTTCACATTTTCTCAATACGTCTCAATCGAAAACCCAAATCACGATGAATTTGCTCACTATGACAGTTCCCTGCAGTTACTTTATTCGGGTAATCGAATCGGGTTCATGTTTGTACCCGCCGGAAAAATTAATTCGGGTCGGACTCAGTATATGGCGGCGACGTTTTCGGTGAAGGCGTTTCCGTTAACGGTGAATGGACAACCGGAGAGTGTGGGTGGGCCGACGGTGACGGATGGGCTGAGTGGGTTTCGGGTCGGATCTAGTATGGAAGTGGAGTCGAGATTGGAAATGGCGGGTCGGGTTAGAATGCTCCATTTTTTTACACATCATGTGGAGAGTAAAGCTGAATGTAGAATTGATATTTCTGTCAGTGATGGATCTGTTACGGCTTTCCACTGTTAGTTATTTTATTTAACTAAAAAAAAATCCGCTCAAATGTAATAGCTCGCAAATTATTAGTTTTTTTAGTTTTAATTATTATTTTTTTGGTTTAGTGTATTTTTGTGTTTGGTAGTGATTTTCAGAGTAATTGTAAAAAAAATGTTTTTCTTATT</gDNA_template>
            <first_frame> L  V  F  F  S  K  Q  N  I  F  V  N  F  F  F  T  E  N  K  N  G  *  I  S  *  T  S  K  W  T  Y  K  F  S  F  M  Y  S  C  N  N  F  L  N  L  H  L  H  H  H  L  H  P  L  L  H  S  F  Q  T  *  I  P  H  Y  H  R  *  L  H  S  A  S  L  F  L  R  L  E  R  H  R  E  L  H  I  F  S  I  R  L  N  R  K  P  K  S  R  *  I  C  S  L  *  Q  F  P  A  V  T  L  F  G  *  S  N  R  V  H  V  C  T  R  R  K  N  *  F  G  S  D  S  V  Y  G  G  D  V  F  G  E  G  V  S  V  N  G  E  W  T  T  G  E  C  G  W  A  D  G  D  G  W  A  E  W  V  S  G  R  I  *  Y  G  S  G  V  E  I  G  N  G  G  S  G  *  N  A  P  F  F  Y  T  S  C  G  E  *  S  *  M  *  N  *  Y  F  C  Q  *  W  I  C  Y  G  F  P  L  L  V  I  L  F  N  *  K  K  I  R  S  N  V  I  A  R  K  L  L  V  F  L  V  L  I  I  I  F  L  V  *  C  I  F  V  F  G  S  D  F  Q  S  N  C  K  K  N  V  F  L  I </first_frame>
            <second_frame>  L  S  F  S  L  N  K  T  F  L  *  I  S  S  S  Q  K  I  K  M  V  K  S  R  K  P  P  S  G  R  T  N  L  A  S  C  I  V  A  T  I  F  L  I  F  I  F  I  I  I  F  I  L  Y  F  T  L  F  K  P  K  S  P  I  I  T  V  N  S  I  Q  L  P  S  F  S  A  S  N  G  T  V  N  F  T  F  S  Q  Y  V  S  I  E  N  P  N  H  D  E  F  A  H  Y  D  S  S  L  Q  L  L  Y  S  G  N  R  I  G  F  M  F  V  P  A  G  K  I  N  S  G  R  T  Q  Y  M  A  A  T  F  S  V  K  A  F  P  L  T  V  N  G  Q  P  E  S  V  G  G  P  T  V  T  D  G  L  S  G  F  R  V  G  S  S  M  E  V  E  S  R  L  E  M  A  G  R  V  R  M  L  H  F  F  T  H  H  V  E  S  K  A  E  C  R  I  D  I  S  V  S  D  G  S  V  T  A  F  H  C  *  L  F  Y  L  T  K  K  K  S  A  Q  M  *  *  L  A  N  Y  *  F  F  *  F  *  L  L  F  F  W  F  S  V  F  L  C  L  V  V  I  F  R  V  I  V  K  K  M  F  F  L   </second_frame>
            <third_frame>   C  L  F  L  *  T  K  H  F  C  E  F  L  L  H  R  K  *  K  W  L  N  L  V  N  L  Q  V  D  V  Q  I  *  L  H  V  *  L  Q  Q  F  S  *  S  S  S  S  S  S  S  S  S  F  T  S  L  F  S  N  L  N  P  P  L  S  P  L  T  P  F  S  F  P  L  S  P  P  R  T  A  P  *  T  S  H  F  L  N  T  S  Q  S  K  T  Q  I  T  M  N  L  L  T  M  T  V  P  C  S  Y  F  I  R  V  I  E  S  G  S  C  L  Y  P  P  E  K  L  I  R  V  G  L  S  I  W  R  R  R  F  R  *  R  R  F  R  *  R  *  M  D  N  R  R  V  W  V  G  R  R  *  R  M  G  *  V  G  F  G  S  D  L  V  W  K  W  S  R  D  W  K  W  R  V  G  L  E  C  S  I  F  L  H  I  M  W  R  V  K  L  N  V  E  L  I  F  L  S  V  M  D  L  L  R  L  S  T  V  S  Y  F  I  *  L  K  K  N  P  L  K  C  N  S  S  Q  I  I  S  F  F  S  F  N  Y  Y  F  F  G  L  V  Y  F  C  V  W  *  *  F  S  E  *  L  *  K  K  C  F  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65939" stop="65322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSSQKIKMVKSRKPPSGRTNLASCIVATIFLIFIFIIIFILYFTLFKPKSPIITVNSIQLPSFSASNGTVNFTFSQYVSIENPNHDEFAHYDSSLQLLYSGNRIGFMFVPAGKINSGRTQYMAATFSVKAFPLTVNGQPESVGGPTVTDGLSGFRVGSSMEVESRLEMAGRVRMLHFFTHHVESKAECRIDISVSDGSVTAFHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67524" e_stop="67020"/>
            <exon e_start="65924" e_stop="65912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.970"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="67524" e_stop="67020" e_length="505"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="65924" e_stop="65912" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67524" stop="67020"/>
              <exon start="65924" stop="65912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67524" stop="67020"/>
              <exon start="65924" stop="65912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67523" stop="67020"/>
              <exon start="65924" stop="65912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAAGGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAAT : AAAATAAAAATGG</gDNA_template>
            <first_frame> V  E  T  G  L  T  P  F  D  I  G  N  M  M  C  R  E  T  L  N  K  E  S  V  I  E  E  I  I  R  D  A  E  D  S  M  L  P  G  M  T  E  A  T  F  L  E  T  V  Y  K  L  M  D  I  K  L  E  K  L  K  Y  K  S  S  *  G  L  *  V  C  I  F  N  S  V  V  C  I  *  R  S  V  H  I  Y  I  Y  K  W  T  E  W  R  *  K  R  L  M  T  D  L  V  R  L  W  S  E  T  F  F  S  L  S  T  S  V  H  Y  Q  *  G  G  Y  S  N  M  E  Q  K  L  Q  Y  A  I  N  N  K  *  N  K  L  L  F  V  K  Q  L  S  C  I  L  S  Q  *  V  K  *  Y  *  I  L  C  T  K  A  I  K   : *  N  K  N   </first_frame>
            <second_frame>  *  R  Q  D  L  H  H  S  T  L  E  I  *  C  A  G  K  P  *  T  R  N  L  *  S  R  K  S  F  V  M  L  K  I  L  C  F  L  A  *  L  K  L  H  F  L  K  L  S  T  S  S  W  I  S  S  L  R  S  *  N  I  N  L  P  K  D  C  K  Y  V  S  S  I  L  L  Y  V  Y  S  V  R  S  I  Y  I  Y  I  N  G  L  N  G  D  R  K  G  *  *  L  T  L  S  V  Y  G  R  K  P  F  F  P  S  Q  L  L  F  I  T  N  K  V  V  I  Q  I  W  S  R  S  C  N  M  Q  *  I  I  N  K  T  S  C  Y  L  *  N  S  C  H  V  S  F  L  N  E  *  S  D  T  E  F  Y  V  Q  K  L  S  N  :  K  I  K  M  </second_frame>
            <third_frame>   R  D  R  T  Y  T  I  R  H  W  K  Y  D  V  Q  G  N  L  E  Q  G  I  C  N  R  G  N  H  S  *  C  *  R  F  Y  A  S  W  H  D  *  S  Y  I  S  *  N  C  L  Q  A  H  G  Y  Q  A  *  E  A  K  I  *  I  F  L  R  I  V  S  M  Y  L  Q  F  C  C  M  Y  I  A  F  G  P  Y  I  Y  I  *  M  D  *  M  E  I  E  K  V  D  D  *  P  C  P  S  M  V  G  N  L  F  F  P  L  N  F  C  S  L  P  I  R  W  L  F  K  Y  G  A  E  V  A  I  C  N  K  *  *  I  K  Q  A  V  I  C  K  T  V  V  M  Y  P  F  S  M  S  K  V  I  L  N  F  M  Y  K  S  Y  Q  I :   K  *  K  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67524" stop="67327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETGLTPFDIGNMMCRETLNKESVIEEIIRDAEDSMLPGMTEATFLETVYKLMDIKLEKLKYKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="69156" PGL_stop="68251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69156" e_stop="68251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69156" e_stop="68251" e_length="906"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69156" stop="68439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68732" stop="68251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</gDNA_template>
            <first_frame> G  E  E  L  K  V  Q  E  L  F  C  N  G  E  K  L  E  D  Q  K  L  I  D  D  I  T  A  D  A  V  I  H  L  V  V  Q  K  F  A  K  L  R  A  K  H  A  E  R  D  V  E  L  S  V  V  A  A  N  W  H  E  E  T  Q  S  Q  G  E  H  E  P  S  R  E  L  Q  S  F  S  K  K  T  P  D  T  N  L  V  L  E  P  F  V  V  D  P  N  V  E  L  P  G  Y  I  W  D  M  I  N  S  A  C  D  G  L  T  K  G  N  I  P  I  R  S  S  E  G  T  G  G  T  Y  F  M  Q  D  G  S  G  N  K  Y  V  A  I  F  K  P  I  D  E  E  P  L  A  V  N  N  P  Q  G  L  P  L  S  T  N  G  E  G  L  K  R  G  T  R  V  G  E  G  A  F  R  E  V  A  A  F  L  L  D  H  P  R  T  G  Q  R  T  L  S  N  C  E  I  G  F  S  G  V  P  P  T  V  M  V  Q  C  L  H  N  T  F  H  H  P  D  G  F  E  W  S  S  E  Y  T  K  I  G  S  L  Q  L  F  M  K  N  E  G  N  C  E  D  M  G  P  G  I  F  P  V  E  E  V  H  K  I  T  V  F  D  I  R  T  A  N  A  D  R  H  A  G  N  I  L  V  S  R  E  G  K  E  G  R  I  V  L  T  P  I  D  H </first_frame>
            <second_frame>  V  R  N  L  R  F  K  S  Y  S  V  M  V  R  S  L  R  I  R  S  S  S  M  I  L  L  L  M  Q  *  F  T  W  *  F  R  N  L  Q  S  F  G  L  S  M  P  R  G  M  L  N  F  L  L  L  Q  L  I  G  M  R  R  P  K  V  R  V  N  M  N  H  P  G  S  Y  S  P  S  P  R  R  H  L  I  Q  I  W  C  W  N  L  L  L  L  I  Q  M  L  N  F  Q  D  I  S  G  T  *  S  T  L  H  V  M  D  *  R  K  A  I  Y  L  S  D  H  L  K  G  L  E  E  L  I  S  C  R  T  G  L  A  T  S  M  L  P  F  L  S  L  L  M  R  N  R  *  L  *  I  T  L  K  G  Y  L  Y  L  P  T  V  K  G  *  K  G  E  P  E  L  E  K  V  H  S  G  R  L  Q  L  S  F  W  T  I  Q  G  P  G  N  E  H  C  P  I  V  R  *  A  F  P  V  C  L  P  L  L  W  F  S  A  C  T  I  H  F  I  I  L  M  D  L  S  G  H  L  N  I  P  K  L  A  H  C  S  C  L  *  R  M  K  E  I  V  R  I  W  V  Q  G  Y  F  L  L  R  K  S  I  R  L  L  S  L  T  *  E  Q  Q  M  L  I  G  M  L  G  I  F  L  *  A  G  K  G  K  K  D  E  S  C  L  H  Q  L  T   </second_frame>
            <third_frame>   *  G  T  *  G  S  R  A  I  L  *  W  *  E  A  *  G  S  E  A  H  R  *  Y  Y  C  *  C  S  D  S  L  G  S  S  E  I  C  K  A  S  G  *  A  C  R  E  G  C  *  T  F  C  C  C  S  *  L  A  *  G  D  P  K  S  G  *  T  *  T  I  Q  G  V  T  V  L  L  Q  E  D  T  *  Y  K  F  G  V  G  T  F  C  C  *  S  K  C  *  T  S  R  I  Y  L  G  H  D  Q  L  C  M  *  W  I  D  E  R  Q  Y  T  Y  P  I  I  *  R  D  W  R  N  L  F  H  A  G  R  V  W  Q  Q  V  C  C  H  F  *  A  Y  *  *  G  T  A  S  C  E  *  P  S  R  A  T  F  I  Y  Q  R  *  R  V  E  K  G  N  P  S  W  R  R  C  I  Q  G  G  C  S  F  P  S  G  P  S  K  D  R  A  T  N  I  V  Q  L  *  D  R  L  F  R  C  A  S  H  C  Y  G  S  V  L  A  Q  Y  I  S  S  S  *  W  I  *  V  V  I  *  I  Y  Q  N  W  L  T  A  A  V  Y  E  E  *  R  K  L  *  G  Y  G  S  R  D  I  S  C  *  G  S  P  *  D  Y  C  L  *  H  K  N  S  K  C  *  *  A  C  W  E  Y  S  C  E  Q  G  R  E  R  R  T  N  R  A  Y  T  N  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69156" stop="68251"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEELKVQELFCNGEKLEDQKLIDDITADAVIHLVVQKFAKLRAKHAERDVELSVVAANWHEETQSQGEHEPSRELQSFSKKTPDTNLVLEPFVVDPNVELPGYIWDMINSACDGLTKGNIPIRSSEGTGGTYFMQDGSGNKYVAIFKPIDEEPLAVNNPQGLPLSTNGEGLKRGTRVGEGAFREVAAFLLDHPRTGQRTLSNCEIGFSGVPPTVMVQCLHNTFHHPDGFEWSSEYTKIGSLQLFMKNEGNCEDMGPGIFPVEEVHKITVFDIRTANADRHAGNILVSREGKEGRIVLTPIDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="94051" PGL_stop="95085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94051" e_stop="95085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="94051" e_stop="95085" e_length="1035"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94051" stop="94638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94051" stop="94580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94184" stop="95062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94184" stop="94845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94184" stop="94661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94368" stop="95085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94393" stop="95081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94459" stop="95031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94459" stop="95027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAATATTTGTA</gDNA_template>
            <first_frame> L  Y  *  G  P  K  K  *  L  N  F  P  K  F  *  S  H  L  P  L  L  I  R  R  P  *  L  H  L  L  Q  K  L  *  I  Y  M  S  Y  I  Y  E  A  P  D  D  E  Q  I  G  *  *  I  I  V  Y  L  I  A  G  P  G  N  I  E  L  K  A  A  E  I  C  H  V  R  T  N  K  A  S  V  A  L  L  R  L  V  W  E  *  Q  A  L  E  N  P  K  F  T  T  S  C  N  I  I  E  F  T  L  I  I  I  D  T  H  D  S  T  R  I  L  H  L  N  I  C  S  T  E  I  S  R  K  P  S  E  *  Y  L  R  D  S  *  P  R  V  H  N  L  R  *  H  K  D  L  Q  I  R  *  H  A  L  E  G  S  R  T  L  H  L  R  D  H  *  K  P  L  S  Y  L  V  K  E  V  E  F  G  Y  E  T  N  D  A  T  S  S  S  L  R  *  Y  H  P  W  C  R  A  I  L  P  R  E  N  N  I  V  V  *  L  R  G  E  T  K  E  *  L  S  A  *  *  E  S  K  I  L  G  N  H  H  V  C  Q  P  T  *  V  K  E  F  W  *  K  R  Y  Q  I  Y  G  *  G  *  *  Q  F  A  K  R  Y  K  H  K  *  R  I  G  N  L  *  V  I  Q  Y  D  L  Q  S  *  Q  G  D  P  S  I  I  L  P  S  R  L  P  *  R  R  T  S  C  S  S  I  F  F  F  G  Y  K  L  Q  Y  I  L  A  Q  V  F  L  F  L  F  V  F  L  Y  *  *  G  F  *  T  S  P  K  I  F  V </first_frame>
            <second_frame>  C  I  K  A  Q  K  N  S  *  I  S  Q  S  F  N  L  I  F  L  F  *  F  A  A  L  D  Y  I  Y  F  K  N  F  K  F  I  C  L  I  S  M  K  L  R  M  M  S  K  S  G  N  K  *  *  F  I  *  *  L  D  Q  V  I  L  N  *  R  L  Q  K  Y  V  M  F  G  P  I  K  Q  V  W  L  Y  C  V  W  F  G  S  S  R  P  W  K  T  Q  N  S  P  L  A  V  T  *  *  N  L  P  L  *  *  L  I  P  M  T  A  P  E  F  S  I  S  I  F  V  Q  L  R  S  P  E  S  Q  A  S  N  I  C  V  I  V  N  H  E  Y  I  I  *  G  N  T  R  T  C  R  *  D  S  M  L  *  K  V  P  E  H  F  I  S  E  T  I  R  S  H  *  V  I  S  *  R  K  L  N  L  G  T  R  Q  M  M  Q  Q  V  H  L  S  G  S  I  I  H  G  A  E  P  S  F  R  G  K  T  I  S  L  S  S  F  G  E  K  Q  R  S  N  F  L  L  D  K  R  V  K  F  S  A  I  I  M  F  V  S  Q  H  K  *  R  S  F  G  K  K  D  I  K  F  M  V  R  G  S  S  N  L  P  R  G  T  N  T  S  K  E  *  E  I  F  R  *  F  N  T  I  C  N  H  S  K  E  I  H  R  *  F  C  P  A  A  C  H  E  E  E  R  V  V  V  L  F  F  F  L  V  T  N  C  N  I  Y  W  R  K  F  S  Y  F  Y  S  Y  F  Y  I  N  K  D  F  E  Q  A  Q  K  Y  L   </second_frame>
            <third_frame>   V  L  R  P  K  K  I  V  E  F  P  K  V  L  I  S  S  S  S  F  N  S  P  P  L  T  T  S  T  S  K  T  L  N  L  Y  V  L  Y  L  *  S  S  G  *  *  A  N  R  V  I  N  N  S  L  S  D  S  W  T  R  *  Y  *  T  E  G  C  R  N  M  S  C  S  D  Q  *  S  K  C  G  S  T  A  F  G  L  G  V  A  G  P  G  K  P  K  I  H  H  *  L  *  H  N  R  I  Y  P  Y  N  N  *  Y  P  *  Q  H  P  N  S  P  S  Q  Y  L  F  N  *  D  L  Q  K  A  K  R  V  I  F  A  *  *  L  T  T  S  T  *  S  E  V  T  Q  G  L  A  D  K  I  A  C  S  R  R  F  Q  N  T  S  S  P  R  P  L  E  A  I  K  L  S  R  E  G  S  *  I  W  V  R  D  K  *  C  N  K  F  I  S  P  V  V  S  S  M  V  Q  S  H  P  S  E  G  K  Q  Y  R  C  L  A  S  G  R  N  K  G  V  T  F  C  L  I  R  E  *  N  S  R  Q  S  S  C  L  S  A  N  I  S  K  G  V  L  V  K  K  I  S  N  L  W  L  G  V  V  A  I  C  Q  E  V  Q  T  Q  V  K  N  R  K  S  L  G  D  S  I  R  F  A  I  I  A  R  R  S  I  D  N  S  A  Q  P  P  A  M  K  K  N  E  L  *  F  Y  F  F  F  W  L  Q  T  A  I  Y  I  G  A  S  F  P  I  F  I  R  I  S  I  L  I  R  I  L  N  K  P  K  N  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94752" stop="94973"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRQSSCLSANISKGVLVKKISNLWLGVVAICQEVQTQVKNRKSLGDSIRFAIIARRSIDNSAQPPAMKKNEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94595" stop="94792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLNLGTRQMMQQVHLSGSIIHGAEPSFRGKTISLSSFGEKQRSNFLLDKRVKFSAIIMFVSQHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96075" PGL_stop="97033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96075" e_stop="96901"/>
            <exon e_start="96975" e_stop="97033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="96075" e_stop="96901" e_length="827"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96902" i_stop="96974" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="96975" e_stop="97033" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96075" stop="96855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96094" stop="96901"/>
              <exon start="96975" stop="97033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96105" stop="96653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAAACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATG : GGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGCCAA</gDNA_template>
            <first_frame> R  T  N  K  L  Q  S  *  K  D  S  N  W  F  S  K  N  A  S  S  Q  I  Q  N  L  S  S  M  S  I  S  S  V  N  M  S  F  S  T  G  N  N  F  I  S  A  R  S  I  L  H  P  K  P  N  I  Q  L  Q  S  S  F  V  I  K  S  P  F  Q  K  S  Y  T  N  P  I  F  H  R  N  F  R  K  R  S  H  F  Y  H  S  P  Y  A  I  L  G  K  W  R  S  N  S  K  S  S  E  E  G  A  S  N  N  E  D  F  V  T  R  V  L  K  E  N  P  S  Q  V  E  P  K  Y  L  I  G  N  K  L  Y  T  L  K  E  K  E  D  L  G  K  K  G  L  L  N  G  G  V  L  E  I  L  K  R  L  N  I  K  G  M  V  K  N  G  S  D  E  G  S  L  M  K  S  G  D  V  F  L  K  D  I  L  R  E  Y  K  G  K  L  Y  V  P  E  Q  I  F  G  A  N  L  S  E  E  E  E  F  E  K  N  V  E  D  L  P  K  M  S  L  K  D  F  Q  K  Y  M  K  F  D  K  I  K  L  L  T  F  K  E  D  T  G  A  S  L  G  L  G  S  R  D  F  I  V  E  L  K  E  M  P  G  E  K  S  L  Q  R  T  K  W :   A  M  K  L  D  Q  N  Q  A  Q  A  L  L  E  E  Y  T  G  P  </first_frame>
            <second_frame>  E  Q  T  N  C  R  A  K  R  T  P  I  G  S  V  K  M  L  L  H  K  S  K  I  S  V  Q  *  V  S  V  Q  *  T  C  L  F  Q  Q  V  T  I  L  Y  Q  Q  G  P  F  F  I  Q  S  P  T  F  S  F  K  V  H  S  *  S  N  P  H  F  R  K  V  I  Q  I  L  F  F  I  E  I  S  E  K  D  H  I  F  T  I  P  H  M  Q  F  L  E  N  G  G  L  I  R  S  P  L  K  K  G  Q  A  I  M  K  I  L  *  L  G  F  *  K  K  T  Q  A  K  W  N  P  N  I  *  L  G  I  N  F  T  L  *  R  K  K  R  I  W  V  R  R  V  Y  *  M  V  V  F  W  R  Y  *  K  G  *  I  L  K  E  W  *  R  M  E  V  M  R  V  V  *  *  S  L  G  M  C  F  *  R  I  F  *  G  S  I  K  G  S  Y  M  F  L  S  K  F  L  V  L  I  C  L  K  K  K  N  L  K  K  M  L  K  I  C  L  R  *  A  *  R  I  F  R  S  I  *  N  L  I  R  *  S  C  *  L  L  K  R  I  L  E  L  L  W  D  W  G  L  E  I  L  L  L  S  *  R  R  C  P  E  R  R  A  C  R  E  L  N   : G  Q  *  S  W  I  K  I  K  L  R  L  Y  *  R  S  T  L  G  Q </second_frame>
            <third_frame>   N  K  Q  I  A  E  L  K  G  L  Q  L  V  Q  *  K  C  F  F  T  N  P  K  S  Q  F  N  E  Y  Q  F  S  K  H  V  F  F  N  R  *  Q  F  Y  I  S  K  V  H  S  S  S  K  A  Q  H  S  A  S  K  F  I  R  N  Q  I  P  I  S  E  K  L  Y  K  S  Y  F  S  *  K  F  Q  K  K  I  T  F  L  P  F  P  I  C  N  S  W  K  M  E  V  *  F  E  V  L  *  R  R  G  K  Q  *  *  R  F  C  D  *  G  F  E  R  K  P  K  P  S  G  T  Q  I  S  N  W  E  *  T  L  H  S  K  G  K  R  G  F  G  *  E  G  F  I  E  W  W  C  F  G  D  T  K  K  V  K  Y  *  R  N  G  E  E  W  K  *  *  G  *  F  N  E  V  W  G  C  V  F  E  G  Y  F  E  G  V  *  R  E  V  I  C  S  *  A  N  F  W  C  *  F  V  *  R  R  R  I  *  K  K  C  *  R  F  A  *  D  E  L  E  G  F  S  E  V  Y  E  I  *  *  D  K  V  V  D  F  *  R  G  Y  W  S  F  F  G  I  G  V  *  R  F  Y  C  *  V  E  G  D  A  R  R  E  E  L  A  E  N  *  M  :  G  N  E  A  G  S  K  S  S  S  G  F  T  R  G  V  H  W  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96099" stop="96901"/>
                    <exon start="96975" stop="97032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDSNWFSKNASSQIQNLSSMSISSVNMSFSTGNNFISARSILHPKPNIQLQSSFVIKSPFQKSYTNPIFHRNFRKRSHFYHSPYAILGKWRSNSKSSEEGASNNEDFVTRVLKENPSQVEPKYLIGNKLYTLKEKEDLGKKGLLNGGVLEILKRLNIKGMVKNGSDEGSLMKSGDVFLKDILREYKGKLYVPEQIFGANLSEEEEFEKNVEDLPKMSLKDFQKYMKFDKIKLLTFKEDTGASLGLGSRDFIVELKEMPGEKSLQRTKWAMKLDQNQAQALLEEYTGP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="99344" PGL_stop="103694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99344" e_stop="99393"/>
            <exon e_start="99495" e_stop="99560"/>
            <exon e_start="99932" e_stop="100027"/>
            <exon e_start="100115" e_stop="100243"/>
            <exon e_start="100321" e_stop="100373"/>
            <exon e_start="100689" e_stop="100884"/>
            <exon e_start="101588" e_stop="101702"/>
            <exon e_start="101909" e_stop="102183"/>
            <exon e_start="102404" e_stop="102487"/>
            <exon e_start="102583" e_stop="102695"/>
            <exon e_start="102769" e_stop="103018"/>
            <exon e_start="103250" e_stop="103694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.111" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.483" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99344" e_stop="99393" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.877">
            <gDNA_intron_boundary i_start="99394" i_stop="99494" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99495" e_stop="99560" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.111">
            <gDNA_intron_boundary i_start="99561" i_stop="99931" i_length="371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99932" e_stop="100027" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100028" i_stop="100114" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100115" e_stop="100243" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100321" e_stop="100373" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.862">
            <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100689" e_stop="100884" e_length="196"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="101588" e_stop="101702" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.726" acc_prob="0.992">
            <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101909" e_stop="102183" e_length="275"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102184" i_stop="102403" i_length="220"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102404" e_stop="102487" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.838">
            <gDNA_intron_boundary i_start="102488" i_stop="102582" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="102583" e_stop="102695" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="0.483" acc_prob="0.884">
            <gDNA_intron_boundary i_start="102696" i_stop="102768" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102769" e_stop="103018" e_length="250"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.990">
            <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="103250" e_stop="103694" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99344" stop="99393"/>
              <exon start="99495" stop="99560"/>
              <exon start="99932" stop="100027"/>
              <exon start="100115" stop="100243"/>
              <exon start="100321" stop="100373"/>
              <exon start="100689" stop="100884"/>
              <exon start="101588" stop="101702"/>
              <exon start="101909" stop="101932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99344" stop="99393"/>
              <exon start="99495" stop="99560"/>
              <exon start="99932" stop="100027"/>
              <exon start="100115" stop="100243"/>
              <exon start="100321" stop="100373"/>
              <exon start="100689" stop="100884"/>
              <exon start="101588" stop="101702"/>
              <exon start="101909" stop="101928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100242" stop="100243"/>
              <exon start="100321" stop="100373"/>
              <exon start="100689" stop="100884"/>
              <exon start="101588" stop="101702"/>
              <exon start="101909" stop="101963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101670" stop="101702"/>
              <exon start="101909" stop="102183"/>
              <exon start="102404" stop="102487"/>
              <exon start="102583" stop="102695"/>
              <exon start="102769" stop="103018"/>
              <exon start="103250" stop="103310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102897" stop="103018"/>
              <exon start="103250" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102897" stop="103018"/>
              <exon start="103250" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGAT : GGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAG : TTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAG : ACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAG : GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG : ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG : ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG : GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAG : ACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAG : GTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAAT : ATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG : GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</gDNA_template>
            <first_frame> Y  G  K  A  *  N  S  L  S  Q  S  H  K  H  V  L  M :   V  Q  L  E  S  H  L  M  M  *  L  G  L  R  K  Q  W  K  N  F  K  S :   W  *  D  T  *  R  I  L  N  Y  L  I  N  W  G  S  S  P  H  M  E  F  F  W  R  D  L  L  D  V  E  R :   P  W  L  P  R  Q  *  Q  V  K  L  V  F  L  F  T  K  W  R  V  L  N  L  W  K  F  *  S  V  L  V  L  L  V  L  E  I  C  S  R  E  P  R :   *  I  N  H  Q  L  S  S  L  T  K  L  M  H  S  Q  P   : D  V  K  E  Y  L  V  N  Q  L  I  T  S  I  T  R  Q  L  K  K  G  K  L  L  *  T  S  C  *  S  S  *  M  D  L  I  L  G  K  V  L  Y  S  *  G  L  Q  I  E  G  I  Y  *  I  P  P  F  F  V  L  V  D  L  I  A  R :   *  E  F  G  L  P  M  Q  K  E  D  W  K  F  *  K  Y  M  H  G  K  L  N  Y  Q  I  L  L  I  C  L  V  M  P  K  I  Y  L  :  D  G  Q  V  Q  S  W  L  S  F  S  R  R  L  L  *  *  Q  S  G  E  G  I  T  Q  F  F  I  Q  I  W  M  M  Q  L  I  G  L  Q  *  D  L  D  E  L  G  L  S  W  V  I  R  G  S  V  V  E  Q  L  L  R  W  G  L  H  *  L  L  I  F  *  G  N  M  R  M  Q  K  L  S  V  V  T  E  Y  L  S  I  R  V  A  R :   P  C  L  K  L  C  F  T  V  L  M  M  S  H  T  C  L  S  G  Y  H  G  C  F  I  V  F  R :   Y  F  L  E  G  E  L  L  K  R  S  F  M  D  V  I  L  Q  E  H  L  *  T  T  L  L  M  H  P  G  L  P  V  R  *  S  Q   : Y  G  I  *  K  T  Q  W  P  Y  M  E  N  L  P  P  G  *  R  E  *  S  L  W  V  H  A  W  T  L  E  D  H  Y  M  M  I  M  T  *  L  S  P  R  S  T  L  I  W  M  T  M  L  L  R  R  Q  K  S  S  Y  V  T  C  T  G  R  Q  *  L  F  *  G  S  M  I  L  P  Y  S  K  Q  *  R :   F  F  *  I  G  L  R  S  V  E  T  R  S  T  *  S  *  A  T  I  H  Q  I  H  P  Q  V  F  C  W  R  R  E  I  P  R  V  F  H  L  L  T  K  S  K  N  S  I  I  T  L  S  T  V  C  L  H  E  K  T  E  S  L  I  Q  A  F  Y  P  I  R  S  Q  F  *  R  A  F  G  T  R  N  I  T  A  E  N  F  L  T  N  S  E  M  L  K  M  Q  F  V  C  C  M  N  P  Y  L  *  E  F  C  *  N  C  *  F  I  L  L  *  F  L  Y  F  S  I  L  L  L  K  R  Q  N  L  H  N  K  I  N  I  R  K  V  V  E  L  H  C </first_frame>
            <second_frame>  M  A  R  H  R  I  L  S  V  K  A  T  S  T  C  *   : W  F  N  W  S  H  I  *  *  C  S  W  D  *  G  S  S  G  R  T  S  R   : V  G  K  I  P  E  E  S  *  T  I  *  *  I  G  D  Q  A  P  T  W  S  S  S  G  G  T  S  W  M  W  K   : D  P  G  C  Q  G  N  S  R  *  S  W  C  S  F  L  P  N  G  G  F  *  I  C  G  S  S  S  R  C  W  F  C  S  Y  *  R  F  V  Q  E  S  Q   : G  E  *  T  I  S  Y  L  H  *  R  N  *  C  T  R  N  Q  :  T  S  R  N  I  *  *  I  N  *  S  P  L  *  R  G  N  S  R  K  G  N  Y  F  K  P  V  V  D  R  A  R  W  I  *  Y  W  E  R  C  Y  I  P  R  G  Y  K  S  K  G  F  I  R  S  R  P  S  S  S  W  *  I  *  S  Q   : D  K  N  S  A  S  Q  C  K  R  K  I  G  N  F  E  S  T  C  T  E  S  *  I  I  R  Y  C  *  F  V  *  L  C  P  K  F  T  W :   M  V  R  C  K  A  G  S  A  S  P  G  G  C  S  S  S  S  Q  E  R  A  *  L  N  S  S  F  R  Y  G  *  C  S  *  S  A  Y  S  R  T  *  T  S  W  D  *  V  G  S  S  G  A  V  S  S  S  N  Y  *  G  G  D  C  I  D  F  S  S  S  E  A  I  *  E  C  R  S  *  A  L  *  Q  N  I  Y  Q  S  A  W  P   : D  L  V  S  S  C  V  S  P  S  *  *  *  V  I  H  V  *  A  A  T  T  V  A  S  S  S  S   : G  I  S  W  R  E  S  C  *  R  G  H  L  W  T  *  Y  F  K  S  I  C  K  L  P  C  *  C  I  L  A  C  P  *  D  N  H  N  :  M  E  Y  E  K  P  N  G  H  T  W  R  T  S  P  L  G  K  E  S  E  V  C  G  S  T  P  G  L  W  R  I  T  I  *  *  L  *  L  N  *  A  P  D  Q  L  *  F  G  *  R  C  C  *  E  D  R  R  A  H  M  *  H  V  R  E  D  S  N  S  S  E  A  A  *  Y  C  L  T  Q  N  S  E   : G  S  S  E  S  D  *  D  Q  W  R  R  D  R  L  N  P  E  P  L  S  T  K  Y  T  H  K  S  S  A  G  G  E  R  S  R  E  S  S  I  C  *  R  K  A  R  T  A  *  *  H  *  V  Q  S  V  F  M  R  K  R  N  P  *  S  R  L  S  T  L  F  E  A  S  F  D  V  H  S  E  H  E  I  L  Q  L  R  T  F  *  Q  I  V  R  C  *  K  C  S  L  F  A  V  *  I  H  I  Y  R  N  F  V  K  T  V  D  L  F  F  C  D  F  C  I  S  V  Y  Y  Y  *  R  G  K  I  F  T  T  K  L  I  *  E  K  *  L  N  Y  T   </second_frame>
            <third_frame>   W  Q  G  I  E  F  S  Q  S  K  P  Q  A  R  V  D  :  G  S  T  G  V  T  F  N  D  V  A  G  I  E  E  A  V  E  E  L  Q  E  :  L  V  R  Y  L  K  N  P  E  L  F  D  K  L  G  I  K  P  P  H  G  V  L  L  E  G  P  P  G  C  G  K  :  T  L  V  A  K  A  I  A  G  E  A  G  V  P  F  Y  Q  M  A  G  S  E  F  V  E  V  L  V  G  V  G  S  A  R  I  R  D  L  F  K  R  A  K  :  V  N  K  P  S  V  I  F  I  D  E  I  D  A  L  A  T  R :   R  Q  G  I  F  S  E  S  T  D  H  L  Y  N  A  A  T  Q  E  R  E  T  T  L  N  Q  L  L  I  E  L  D  G  F  D  T  G  K  G  V  I  F  L  G  A  T  N  R  R  D  L  L  D  P  A  L  L  R  P  G  R  F  D  R  K  :  I  R  I  R  P  P  N  A  K  G  R  L  E  I  L  K  V  H  A  R  K  V  K  L  S  D  T  V  D  L  S  S  Y  A  Q  N  L  P   : G  W  S  G  A  K  L  A  Q  L  L  Q  E  A  A  L  V  A  V  R  R  G  H  N  S  I  L  H  S  D  M  D  D  A  V  D  R  L  T  V  G  P  R  R  V  G  I  E  L  G  H  Q  G  Q  C  R  R  A  I  T  E  V  G  T  A  L  T  S  H  L  L  R  Q  Y  E  N  A  E  V  E  R  C  D  R  I  S  I  N  P  R  G  Q  :  T  L  S  Q  V  V  F  H  R  L  D  D  E  S  Y  M  F  E  R  L  P  R  L  L  H  R  L  Q  :  V  F  L  G  G  R  A  A  E  E  V  I  Y  G  R  D  T  S  R  A  S  V  N  Y  L  A  D  A  S  W  L  A  R  K  I  I  T  I :   W  N  M  K  N  P  M  A  I  H  G  E  P  P  P  W  V  K  R  V  K  F  V  G  P  R  L  D  F  G  G  S  L  Y  D  D  Y  D  L  I  E  P  P  I  N  F  N  L  D  D  D  V  A  K  K  T  E  E  L  I  C  D  M  Y  G  K  T  V  T  L  L  R  Q  H  D  T  A  L  L  K  T  V  K  :  V  L  L  N  R  T  E  I  S  G  D  E  I  D  L  I  L  S  H  Y  P  P  N  T  P  T  S  L  L  L  E  E  R  D  P  A  S  L  P  F  V  D  E  K  Q  E  Q  H  N  N  I  E  Y  S  L  S  S  *  E  N  G  I  L  D  P  G  F  L  P  Y  S  K  P  V  L  T  C  I  R  N  T  K  Y  Y  S  *  E  L  S  D  K  *  *  D  A  K  N  A  V  C  L  L  Y  E  S  I  S  I  G  I  L  L  K  L  L  I  Y  S  S  V  I  F  V  F  Q  Y  I  T  I  E  E  A  K  S  S  Q  Q  N  *  Y  K  K  S  S  *  I  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99346" stop="99393"/>
                    <exon start="99495" stop="99560"/>
                    <exon start="99932" stop="100027"/>
                    <exon start="100115" stop="100243"/>
                    <exon start="100321" stop="100373"/>
                    <exon start="100689" stop="100884"/>
                    <exon start="101588" stop="101702"/>
                    <exon start="101909" stop="102183"/>
                    <exon start="102404" stop="102487"/>
                    <exon start="102583" stop="102695"/>
                    <exon start="102769" stop="103018"/>
                    <exon start="103250" stop="103423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQGIEFSQSKPQARVDGSTGVTFNDVAGIEEAVEELQELVRYLKNPELFDKLGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFSESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRIRPPNAKGRLEILKVHARKVKLSDTVDLSSYAQNLPGWSGAKLAQLLQEAALVAVRRGHNSILHSDMDDAVDRLTVGPRRVGIELGHQGQCRRAITEVGTALTSHLLRQYENAEVERCDRISINPRGQTLSQVVFHRLDDESYMFERLPRLLHRLQVFLGGRAAEEVIYGRDTSRASVNYLADASWLARKIITIWNMKNPMAIHGEPPPWVKRVKFVGPRLDFGGSLYDDYDLIEPPINFNLDDDVAKKTEELICDMYGKTVTLLRQHDTALLKTVKVLLNRTEISGDEIDLILSHYPPNTPTSLLLEERDPASLPFVDEKQEQHNNIEYSLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101582" e_stop="101702"/>
            <exon e_start="101909" e_stop="102183"/>
            <exon e_start="102404" e_stop="102487"/>
            <exon e_start="102583" e_stop="102695"/>
            <exon e_start="102769" e_stop="103018"/>
            <exon e_start="103250" e_stop="103694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.726" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.483" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101582" e_stop="101702" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.726" acc_prob="0.992">
            <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101909" e_stop="102183" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102184" i_stop="102403" i_length="220"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102404" e_stop="102487" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.838">
            <gDNA_intron_boundary i_start="102488" i_stop="102582" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102583" e_stop="102695" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.483" acc_prob="0.884">
            <gDNA_intron_boundary i_start="102696" i_stop="102768" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102769" e_stop="103018" e_length="250"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.990">
            <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="103250" e_stop="103694" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101582" stop="101702"/>
              <exon start="101909" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101670" stop="101702"/>
              <exon start="101909" stop="102183"/>
              <exon start="102404" stop="102487"/>
              <exon start="102583" stop="102695"/>
              <exon start="102769" stop="103018"/>
              <exon start="103250" stop="103310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102897" stop="103018"/>
              <exon start="103250" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102897" stop="103018"/>
              <exon start="103250" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG : GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAG : ACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAG : GTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAAT : ATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG : GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</gDNA_template>
            <first_frame> F  Q  I  R  I  R  P  P  N  A  K  G  R  L  E  I  L  K  V  H  A  R  K  V  K  L  S  D  T  V  D  L  S  S  Y  A  Q  N  L  P   : G  W  S  G  A  K  L  A  Q  L  L  Q  E  A  A  L  V  A  V  R  R  G  H  N  S  I  L  H  S  D  M  D  D  A  V  D  R  L  T  V  G  P  R  R  V  G  I  E  L  G  H  Q  G  Q  C  R  R  A  I  T  E  V  G  T  A  L  T  S  H  L  L  R  Q  Y  E  N  A  E  V  E  R  C  D  R  I  S  I  N  P  R  G  Q  :  T  L  S  Q  V  V  F  H  R  L  D  D  E  S  Y  M  F  E  R  L  P  R  L  L  H  R  L  Q  :  V  F  L  G  G  R  A  A  E  E  V  I  Y  G  R  D  T  S  R  A  S  V  N  Y  L  A  D  A  S  W  L  A  R  K  I  I  T  I :   W  N  M  K  N  P  M  A  I  H  G  E  P  P  P  W  V  K  R  V  K  F  V  G  P  R  L  D  F  G  G  S  L  Y  D  D  Y  D  L  I  E  P  P  I  N  F  N  L  D  D  D  V  A  K  K  T  E  E  L  I  C  D  M  Y  G  K  T  V  T  L  L  R  Q  H  D  T  A  L  L  K  T  V  K  :  V  L  L  N  R  T  E  I  S  G  D  E  I  D  L  I  L  S  H  Y  P  P  N  T  P  T  S  L  L  L  E  E  R  D  P  A  S  L  P  F  V  D  E  K  Q  E  Q  H  N  N  I  E  Y  S  L  S  S  *  E  N  G  I  L  D  P  G  F  L  P  Y  S  K  P  V  L  T  C  I  R  N  T  K  Y  Y  S  *  E  L  S  D  K  *  *  D  A  K  N  A  V  C  L  L  Y  E  S  I  S  I  G  I  L  L  K  L  L  I  Y  S  S  V  I  F  V  F  Q  Y  I  T  I  E  E  A  K  S  S  Q  Q  N  *  Y  K  K  S  S  *  I  T  L  </first_frame>
            <second_frame>  F  R  *  E  F  G  L  P  M  Q  K  E  D  W  K  F  *  K  Y  M  H  G  K  L  N  Y  Q  I  L  L  I  C  L  V  M  P  K  I  Y  L  :  D  G  Q  V  Q  S  W  L  S  F  S  R  R  L  L  *  *  Q  S  G  E  G  I  T  Q  F  F  I  Q  I  W  M  M  Q  L  I  G  L  Q  *  D  L  D  E  L  G  L  S  W  V  I  R  G  S  V  V  E  Q  L  L  R  W  G  L  H  *  L  L  I  F  *  G  N  M  R  M  Q  K  L  S  V  V  T  E  Y  L  S  I  R  V  A  R :   P  C  L  K  L  C  F  T  V  L  M  M  S  H  T  C  L  S  G  Y  H  G  C  F  I  V  F  R :   Y  F  L  E  G  E  L  L  K  R  S  F  M  D  V  I  L  Q  E  H  L  *  T  T  L  L  M  H  P  G  L  P  V  R  *  S  Q   : Y  G  I  *  K  T  Q  W  P  Y  M  E  N  L  P  P  G  *  R  E  *  S  L  W  V  H  A  W  T  L  E  D  H  Y  M  M  I  M  T  *  L  S  P  R  S  T  L  I  W  M  T  M  L  L  R  R  Q  K  S  S  Y  V  T  C  T  G  R  Q  *  L  F  *  G  S  M  I  L  P  Y  S  K  Q  *  R :   F  F  *  I  G  L  R  S  V  E  T  R  S  T  *  S  *  A  T  I  H  Q  I  H  P  Q  V  F  C  W  R  R  E  I  P  R  V  F  H  L  L  T  K  S  K  N  S  I  I  T  L  S  T  V  C  L  H  E  K  T  E  S  L  I  Q  A  F  Y  P  I  R  S  Q  F  *  R  A  F  G  T  R  N  I  T  A  E  N  F  L  T  N  S  E  M  L  K  M  Q  F  V  C  C  M  N  P  Y  L  *  E  F  C  *  N  C  *  F  I  L  L  *  F  L  Y  F  S  I  L  L  L  K  R  Q  N  L  H  N  K  I  N  I  R  K  V  V  E  L  H  C </second_frame>
            <third_frame>   S  D  K  N  S  A  S  Q  C  K  R  K  I  G  N  F  E  S  T  C  T  E  S  *  I  I  R  Y  C  *  F  V  *  L  C  P  K  F  T  W :   M  V  R  C  K  A  G  S  A  S  P  G  G  C  S  S  S  S  Q  E  R  A  *  L  N  S  S  F  R  Y  G  *  C  S  *  S  A  Y  S  R  T  *  T  S  W  D  *  V  G  S  S  G  A  V  S  S  S  N  Y  *  G  G  D  C  I  D  F  S  S  S  E  A  I  *  E  C  R  S  *  A  L  *  Q  N  I  Y  Q  S  A  W  P   : D  L  V  S  S  C  V  S  P  S  *  *  *  V  I  H  V  *  A  A  T  T  V  A  S  S  S  S   : G  I  S  W  R  E  S  C  *  R  G  H  L  W  T  *  Y  F  K  S  I  C  K  L  P  C  *  C  I  L  A  C  P  *  D  N  H  N  :  M  E  Y  E  K  P  N  G  H  T  W  R  T  S  P  L  G  K  E  S  E  V  C  G  S  T  P  G  L  W  R  I  T  I  *  *  L  *  L  N  *  A  P  D  Q  L  *  F  G  *  R  C  C  *  E  D  R  R  A  H  M  *  H  V  R  E  D  S  N  S  S  E  A  A  *  Y  C  L  T  Q  N  S  E   : G  S  S  E  S  D  *  D  Q  W  R  R  D  R  L  N  P  E  P  L  S  T  K  Y  T  H  K  S  S  A  G  G  E  R  S  R  E  S  S  I  C  *  R  K  A  R  T  A  *  *  H  *  V  Q  S  V  F  M  R  K  R  N  P  *  S  R  L  S  T  L  F  E  A  S  F  D  V  H  S  E  H  E  I  L  Q  L  R  T  F  *  Q  I  V  R  C  *  K  C  S  L  F  A  V  *  I  H  I  Y  R  N  F  V  K  T  V  D  L  F  F  C  D  F  C  I  S  V  Y  Y  Y  *  R  G  K  I  F  T  T  K  L  I  *  E  K  *  L  N  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101582" stop="101702"/>
                    <exon start="101909" stop="102183"/>
                    <exon start="102404" stop="102487"/>
                    <exon start="102583" stop="102695"/>
                    <exon start="102769" stop="103018"/>
                    <exon start="103250" stop="103423"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQIRIRPPNAKGRLEILKVHARKVKLSDTVDLSSYAQNLPGWSGAKLAQLLQEAALVAVRRGHNSILHSDMDDAVDRLTVGPRRVGIELGHQGQCRRAITEVGTALTSHLLRQYENAEVERCDRISINPRGQTLSQVVFHRLDDESYMFERLPRLLHRLQVFLGGRAAEEVIYGRDTSRASVNYLADASWLARKIITIWNMKNPMAIHGEPPPWVKRVKFVGPRLDFGGSLYDDYDLIEPPINFNLDDDVAKKTEELICDMYGKTVTLLRQHDTALLKTVKVLLNRTEISGDEIDLILSHYPPNTPTSLLLEERDPASLPFVDEKQEQHNNIEYSLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="104306" PGL_stop="106790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104306" e_stop="104422"/>
            <exon e_start="105773" e_stop="106790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104306" e_stop="104422" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104423" i_stop="105772" i_length="1350"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="105773" e_stop="106790" e_length="1018"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104306" stop="104422"/>
              <exon start="105773" stop="106268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106082" stop="106612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106162" stop="106718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106269" stop="106790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAG : GGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAGACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</gDNA_template>
            <first_frame> L  V  T  S  Y  T  T  M  *  S  P  N  L  S  C  L  C  G  S  S  F  L  F  S  V  P  F  C  F  S  I  L  C  S  F  M  D  M  E  :  G  F  L  L  P  M  L  R  L  L  P  I  I  V  L  K  I  *  S  S  T  A  P  L  N  H  F  *  K  A  E  G  R  V  A  K  L  K  C  Y  W  N  S  T  Y  Q  L  R  L  M  I  L  V  V  L  R  I  T  L  Q  P  L  S  I  H  C  R  K  Q  V  H  W  K  M  Q  F  Q  L  F  *  V  T  I  C  *  Y  A  K  C  S  H  K  *  C  I  S  I  G  M  K  V  E  Y  S  M  E  E  V  T  *  P  I  Q  I  W  K  N  S  E  A  L  Q  N  K  K  R  E  G  A  P  Q  V  S  *  *  I  S  P  T  G  L  S  L  M  V  R  L  T  I  M  P  R  H  P  R  V  L  K  W  W  P  I  I  K  K  Q  K  E  Q  T  T  Y  *  T  R  I  M  I  S  I  S  E  T  L  V  L  W  P  G  N  S  L  L  L  S  L  Q  M  K  L  *  L  M  Q  S  K  L  Q  I  L  S  I  I  H  L  C  *  K  N  L  S  Y  Q  G  V  W  Y  I  Q  L  R  R  G  I  H  W  E  L  L  L  L  K  M  S  S  M  L  S  V  L  S  Y  L  N  Q  N  G  L  D  T  *  S  *  I  Y  S  H  I  M  A  L  N  F  I  V  L  S  V  L  S  R  Y  M  V  L  M  P  *  S  R  C  L  R  I  S  S  S  I  P  P  S  L  L  L  I  K  W  E  I  L  T  R  L  L  C  C  L  *  Y  Q  I  Q  V  L  T  T  M  K  Q  R  M  S  S  K  M  W  L  S  L  </first_frame>
            <second_frame>  S  *  H  R  I  Q  R  C  S  L  Q  T  S  A  V  F  A  A  L  R  F  Y  F  L  C  H  S  A  F  L  F  Y  V  R  L  W  I  W  R :   D  F  S  C  L  C  *  D  Y  Y  Q  L  *  C  *  R  Y  R  V  Q  Q  L  H  S  T  T  F  R  K  R  R  E  E  *  Q  N  *  N  A  I  G  T  Q  H  I  S  *  D  *  *  F  L  *  S  Y  G  *  H  C  N  P  *  A  F  T  A  E  N  K  C  I  G  R  C  S  F  N  Y  F  R  L  Q  Y  V  N  M  P  N  A  A  T  S  S  A  Y  P  S  E  *  R  S  N  T  Q  W  K  K  S  L  D  L  S  K  S  G  R  I  Q  K  H  Y  K  T  R  K  E  R  E  H  R  K  S  V  S  K  Y  H  P  Q  A  *  A  *  W  Y  A  L  Q  L  C  L  V  I  Q  G  C  *  S  G  G  P  *  *  R  S  K  R  S  K  Q  R  T  E  Q  G  S  *  *  V  S  Q  K  P  L  F  C  G  R  E  I  L  C  Y  *  V  C  R  *  N  S  S  *  C  S  Q  N  C  K  F  *  A  L  F  I  Y  A  K  R  I  *  V  I  R  E  F  G  I  S  N  *  D  V  E  S  T  G  N  F  C  C  *  K  C  Q  A  C  S  V  F  *  A  T  *  T  K  M  G  *  I  L  E  A  K  F  T  H  T  L  W  L  *  I  L  L  Y  Y  Q  F  Y  R  G  I  W  Y  *  C  H  R  A  D  A  *  G  S  H  R  P  F  P  R  V  F  S  *  *  N  G  K  S  *  Q  D  Y  Y  A  V  Y  D  T  R  F  R  F  *  L  P  *  N  K  G  C  R  P  K  C  G  *  V  C </second_frame>
            <third_frame>   R  N  I  V  Y  N  D  V  V  S  K  P  Q  L  S  L  R  L  F  V  S  I  F  C  A  I  L  L  F  Y  S  M  F  V  Y  G  Y  G   : G  I  S  L  A  Y  A  E  T  I  T  N  Y  S  V  K  D  I  E  F  N  S  S  T  Q  P  L  L  E  S  G  G  K  S  S  K  T  E  M  L  L  E  L  N  I  S  V  K  I  N  D  S  C  S  P  T  D  N  I  A  T  P  E  H  S  L  Q  K  T  S  A  L  E  D  A  V  S  T  I  L  G  Y  N  M  L  I  C  Q  M  Q  P  Q  V  V  H  I  H  R  N  E  G  R  I  L  N  G  R  S  H  L  T  Y  P  N  L  E  E  F  R  S  I  T  K  Q  E  K  R  G  S  T  A  S  Q  L  V  N  I  T  H  R  L  E  P  D  G  T  P  Y  N  Y  A  S  S  S  K  G  A  K  V  V  A  H  N  K  E  A  K  G  A  N  N  V  L  N  K  D  H  D  K  Y  L  R  N  P  C  S  V  A  G  K  F  F  V  I  E  F  A  D  E  T  L  V  D  A  V  K  I  A  N  F  E  H  Y  S  S  M  L  K  E  F  E  L  S  G  S  L  V  Y  P  T  E  T  W  N  P  L  G  T  F  V  A  E  N  V  K  H  A  Q  C  F  K  L  P  E  P  K  W  V  R  Y  L  K  L  N  L  L  T  H  Y  G  S  E  F  Y  C  T  I  S  F  I  E  V  Y  G  I  D  A  I  E  Q  M  L  E  D  L  I  V  H  S  P  E  S  S  P  D  K  M  G  N  L  N  K  T  T  M  L  S  M  I  P  D  S  G  S  D  Y  H  E  T  K  D  V  V  Q  N  V  V  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104308" stop="104422"/>
                    <exon start="105773" stop="106788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNIVYNDVVSKPQLSLRLFVSIFCAILLFYSMFVYGYGGISLAYAETITNYSVKDIEFNSSTQPLLESGGKSSKTEMLLELNISVKINDSCSPTDNIATPEHSLQKTSALEDAVSTILGYNMLICQMQPQVVHIHRNEGRILNGRSHLTYPNLEEFRSITKQEKRGSTASQLVNITHRLEPDGTPYNYASSSKGAKVVAHNKEAKGANNVLNKDHDKYLRNPCSVAGKFFVIEFADETLVDAVKIANFEHYSSMLKEFELSGSLVYPTETWNPLGTFVAENVKHAQCFKLPEPKWVRYLKLNLLTHYGSEFYCTISFIEVYGIDAIEQMLEDLIVHSPESSPDKMGNLNKTTMLSMIPDSGSDYHETKDVVQNVVES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="111227" PGL_stop="110685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111227" e_stop="110685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="111227" e_stop="110685" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111227" stop="110685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTCAAACCCAAAAAATGTCAAATTATTAATACTTTTACCTACAATATATAGAACTTACGGATTATAATTCTACATATAAAAGTGTGTAAGAGGAGATCCGTAGTAACACATCCACGTAAAATTCTAACTTCTCTATCCTTCAGATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCTTTCATGTAATAGTTACAGGAAGACTCCGTACTACATAAAAAGATTAGTGAGGTTTACACCCTATTGTTAGAACTGAAAAATGTTGATATGAAGGAATAAAATTACATTCTTTAATAGGAGAAGTCTTCCAATATTCCGATGAAGTAATACGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTGATCGTGTAAAAATCTTTAGATGGTATATGTATACAACTTGTGAAATGCAGTGAGCTTCTAACTGTAAAGTTGTTATCTTTAATGTCTGATGCTTTCTGT</gDNA_template>
            <first_frame> H  I  Q  T  Q  K  M  S  N  Y  *  Y  F  Y  L  Q  Y  I  E  L  T  D  Y  N  S  T  Y  K  S  V  *  E  E  I  R  S  N  T  S  T  *  N  S  N  F  S  I  L  Q  I  K  D  L  L  D  L  K  G  H  L  M  L  S  C  N  S  Y  R  K  T  P  Y  Y  I  K  R  L  V  R  F  T  P  Y  C  *  N  *  K  M  L  I  *  R  N  K  I  T  F  F  N  R  R  S  L  P  I  F  R  *  S  N  T  *  K  *  *  E  Y  S  T  F  K  V  *  K  R  Y  H  F  S  L  L  D  Y  D  Y  E  Y  L  I  L  S  H  P  K  M  E  L  I  V  *  K  S  L  D  G  I  C  I  Q  L  V  K  C  S  E  L  L  T  V  K  L  L  S  L  M  S  D  A  F  C </first_frame>
            <second_frame>  T  F  K  P  K  K  C  Q  I  I  N  T  F  T  Y  N  I  *  N  L  R  I  I  I  L  H  I  K  V  C  K  R  R  S  V  V  T  H  P  R  K  I  L  T  S  L  S  F  R  L  K  I  Y  *  T  *  K  A  T  *  C  F  H  V  I  V  T  G  R  L  R  T  T  *  K  D  *  *  G  L  H  P  I  V  R  T  E  K  C  *  Y  E  G  I  K  L  H  S  L  I  G  E  V  F  Q  Y  S  D  E  V  I  R  R  N  N  R  S  I  Q  L  L  K  Y  R  K  D  I  T  F  L  C  *  T  M  T  M  S  T  *  S  F  L  T  L  R  W  S  *  S  C  K  N  L  *  M  V  Y  V  Y  N  L  *  N  A  V  S  F  *  L  *  S  C  Y  L  *  C  L  M  L  S   </second_frame>
            <third_frame>   H  S  N  P  K  N  V  K  L  L  I  L  L  P  T  I  Y  R  T  Y  G  L  *  F  Y  I  *  K  C  V  R  G  D  P  *  *  H  I  H  V  K  F  *  L  L  Y  P  S  D  *  R  S  T  R  P  K  R  P  P  N  A  F  M  *  *  L  Q  E  D  S  V  L  H  K  K  I  S  E  V  Y  T  L  L  L  E  L  K  N  V  D  M  K  E  *  N  Y  I  L  *  *  E  K  S  S  N  I  P  M  K  *  Y  V  E  I  I  G  V  F  N  F  *  S  I  E  K  I  S  L  F  S  V  R  L  *  L  *  V  L  D  P  F  S  P  *  D  G  V  D  R  V  K  I  F  R  W  Y  M  Y  T  T  C  E  M  Q  *  A  S  N  C  K  V  V  I  F  N  V  *  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="116939" PGL_stop="125545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123495" e_stop="123819"/>
            <exon e_start="124425" e_stop="124667"/>
            <exon e_start="125246" e_stop="125545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123819" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124425" e_stop="124667" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125246" e_stop="125545" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123495" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123523" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123531" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123538" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123538" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123547" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123549" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123550" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123583" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124507" stop="124667"/>
              <exon start="125246" stop="125545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124630" stop="124667"/>
              <exon start="125246" stop="125545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG : AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG : CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</gDNA_template>
            <first_frame> K  *  C  P  I  T  N  I  I  T  I  H  K  V  P  G  T  E  H  S  G  A  E  W  L  R  R  *  S  P  P  P  A  W  P  P  V  V  A  A  P  S  F  S  P  S  Q  N  Y  H  P  K  S  C  K  F  Y  L  T  N  K  S  F  S  Q  T  K  S  G  L  H  C  P  F  S  V  L  L  Q  L  H  L  *  K  K  K  M  G  R  L  T  M  S  F  Q  L  R  *  M  K  N  L  V  Q  F  Y  L  P   : E  H  V  R  V  V  G  D  W  R  L  K  V  V  V  M  A  K  D  G  Y  K  E  G  L  Q  Q  F  Q  G  L  V  G  G  Q  S  R  L  T  G  R  A  L  R  L  L  L  L  V  V  G  T  K  G  L  D  K  A  W  M  K  L  S  L  G  K  E  V  E  L  V  L  S  E  L  T  L  R  F  N  Q   : A  R  K  R  T  E  R  R  D  R  R  A  N  C  W  N  V  I  S  R  D  W  R  L  F  G  *  A  R  S  L  S  Y  *  L  G  S  F  L  V  S  L  *  V  F  W  *  *  K  L  E  L  R  V  F  I  Q  I  P  N  G  Y  L  C  *  Q  L  *  S  R  *  T  M  L  F  Y  F  Q  L  Y  Y  L  V  C  Y  W  S  R  L  H  P  *  N  Y  T  S  Y  V  V  V  </first_frame>
            <second_frame>  N  D  V  Q  *  Q  T  L  S  P  S  I  R  F  R  G  L  S  T  V  E  Q  S  G  *  E  D  D  H  R  H  Q  H  G  H  R  W  *  Q  L  R  L  S  L  R  P  K  T  T  I  P  K  V  A  N  F  I  S  Q  T  S  L  F  H  K  Q  K  V  V  Y  I  A  L  S  L  F  F  F  N  S  T  C  R  R  R  K  W  V  D  *  R  C  P  S  S  F  D  K  *  R  I  *  F  S  F  T  S  R  :  S  M  *  G  L  W  E  I  G  D  *  K  W  L  *  W  R  R  T  D  T  R  R  D  C  N  N  S  R  V  W  L  V  A  N  Q  G  L  Q  A  V  P  C  V  C  C  F  W  W  *  V  Q  K  V  W  T  K  H  G  *  S  C  L  W  E  R  R  *  S  *  Y  C  R  N  *  R  *  G  S  I  K  :  H  E  K  E  Q  N  E  E  I  E  E  L  T  V  G  M  *  F  Q  E  I  G  G  C  L  A  E  H  G  V  *  A  T  N  L  A  V  S  S  S  L  Y  R  F  F  G  D  K  N  L  N  C  V  Y  L  Y  K  S  Q  M  V  I  C  V  S  N  C  N  Q  D  E  L  C  C  F  I  S  N  Y  T  I  *  F  V  T  G  Q  D  F  T  R  E  I  I  L  A  M  L  L  L </second_frame>
            <third_frame>   M  M  S  N  N  K  H  Y  H  H  P  *  G  S  G  D  *  A  Q  W  S  R  V  A  E  K  M  I  T  A  T  S  M  A  T  G  G  S  S  S  V  F  L  S  V  P  K  L  P  S  Q  K  L  Q  I  L  S  H  K  Q  V  F  F  T  N  K  K  W  S  T  L  P  F  L  C  S  S  S  T  P  L  V  E  E  E  N  G  S  T  D  D  V  L  P  A  S  I  N  E  E  S  S  S  V  L  P  P  G :   A  C  K  G  C  G  R  L  E  I  E  S  G  C  N  G  E  G  R  I  Q  G  G  I  A  T  I  P  G  F  G  W  W  P  I  K  A  Y  R  P  C  P  A  F  V  A  S  G  G  R  Y  K  R  F  G  Q  S  M  D  E  V  V  S  G  K  G  G  R  V  S  T  V  G  T  D  V  E  V  Q  S  S :   T  K  K  N  R  T  K  R  S  K  S  *  L  L  E  C  N  F  K  R  L  E  V  V  W  L  S  T  E  F  K  L  L  T  W  Q  F  P  R  L  S  I  G  F  L  V  I  K  T  *  I  A  C  I  Y  T  N  P  K  W  L  F  V  L  A  I  V  I  K  M  N  Y  V  V  L  F  P  T  I  L  F  S  L  L  L  V  K  T  S  P  V  K  L  Y  *  L  C  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123548" stop="123819"/>
                    <exon start="124425" stop="124667"/>
                    <exon start="125246" stop="125282"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQWSRVAEKMITATSMATGGSSSVFLSVPKLPSQKLQILSHKQVFFTNKKWSTLPFLCSSSTPLVEEENGSTDDVLPASINEESSSVLPPGACKGCGRLEIESGCNGEGRIQGGIATIPGFGWWPIKAYRPCPAFVASGGRYKRFGQSMDEVVSGKGGRVSTVGTDVEVQSSTKKNRTKRSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116939" e_stop="117460"/>
            <exon e_start="120179" e_stop="120375"/>
            <exon e_start="122649" e_stop="122784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.068" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116939" e_stop="117460" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="117461" i_stop="120178" i_length="2718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120179" e_stop="120375" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.068" acc_prob="0.931">
            <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122649" e_stop="122784" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116939" stop="117460"/>
              <exon start="120179" stop="120375"/>
              <exon start="122649" stop="122784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116951" stop="117460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116951" stop="117268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116968" stop="117449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCCAGTAATACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG : GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGG : TCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGA</gDNA_template>
            <first_frame> N  S  S  N  T  N  R  V  S  K  L  N  S  P  K  P  *  S  V  F  Y  E  R  R  R  R  V  F  H  D  L  *  M  D  I  S  F  F  S  G  A  V  T  L  I  C  C  F  F  A  V  A  A  A  C  L  T  H  R  S  K  S  V  R  T  K  G  G  E  D  S  C  N  C  A  C  S  H  G  S  C  G  G  G  R  F  D  K  T  S  V  L  N  G  G  S  S  G  S  S  V  F  G  G  F  E  E  E  M  V  E  K  V  S  V  T  V  A  A  E  K  L  T  G  A  S  M  M  E  Q  L  V  P  E  I  T  T  H  A  L  S  Y  L  D  Y  P  S  L  C  R  L  S  M  T  N  S  L  M  R  K  A  A  N  D  D  N  A  W  K  A  L  Y  H  K  :  D  F  T  L  E  Q  D  S  L  S  P  I  N  G  W  K  A  Y  Y  A  A  T  R  A  I  M  N  V  N  A  D  F  F  N  I  I  R  E  R  S  V  P  A  M  E  R  F  W  L  N  A  D  Y  V  K  C  F  H  A  S  G  E  C  F  T  G :   H  N  A  V  I  G  S  W  Q  L  A  F  N  W  E  Q  N  V  D  F  E  I  R  D  V  K  A  R  V  M  T  D  S  A  W  V  T  M  K  A  Y  L  N  M  G </first_frame>
            <second_frame>  T  P  V  I  Q  I  G  F  Q  N  *  I  L  R  N  P  N  R  S  F  M  N  V  D  D  E  F  F  M  T  Y  E  W  I  L  V  F  S  P  A  P  S  R  *  S  V  V  F  S  P  S  L  P  L  V  *  L  T  D  Q  N  R  C  G  R  R  A  E  R  I  P  A  T  V  L  V  R  M  V  V  V  E  E  D  V  L  I  R  L  R  F  *  T  E  G  V  V  V  V  V  F  L  V  V  L  R  K  K  W  L  R  K  C  L  *  Q  W  L  R  R  N  *  Q  G  R  R  *  W  S  S  L  F  L  K  L  R  R  M  R  *  A  I  W  I  I  R  V  F  V  G  F  R  *  R  I  R  L  *  G  R  L  Q  M  M  I  M  H  G  K  L  S  I  T  R :   I  S  H  W  S  R  I  L  C  L  Q  L  M  D  G  R  L  T  M  Q  L  Q  E  P  L  *  M  S  M  L  I  F  L  I  L  L  E  R  D  Q  F  Q  L  W  N  V  F  G  S  M  Q  I  T  *  S  V  F  M  P  L  E  S  A  L  R   : V  T  M  Q  S  L  V  A  G  N  W  L  L  T  G  S  R  M  L  I  L  K  L  E  T  *  R  Q  E  *  *  Q  I  R  L  G  *  L  *  K  L  I  L  I  W   </second_frame>
            <third_frame>   L  Q  *  Y  K  *  G  F  K  I  E  F  S  E  T  L  I  G  L  L  *  T  S  T  T  S  F  S  *  L  M  N  G  Y  *  F  F  L  R  R  R  H  V  N  L  L  F  F  R  R  R  C  R  L  F  D  S  P  I  K  I  G  A  D  E  G  R  R  G  F  L  Q  L  C  L  F  A  W  *  L  W  R  R  T  F  *  *  D  F  G  F  E  R  R  E  *  W  *  *  C  F  W  W  F  *  G  R  N  G  *  E  S  V  C  D  S  G  C  G  E  T  D  R  G  V  D  D  G  A  A  C  S  *  N  Y  D  A  C  V  E  L  F  G  L  S  E  S  L  *  A  F  D  D  E  F  A  Y  E  E  G  C  K  *  *  *  C  M  E  S  S  L  S  Q   : G  F  H  I  G  A  G  F  S  V  S  N  *  W  M  E  G  L  L  C  S  Y  K  S  H  Y  E  C  Q  C  *  F  F  *  Y  Y  *  R  E  I  S  S  S  Y  G  T  F  L  A  Q  C  R  L  R  E  V  F  S  C  L  W  R  V  L  Y  G  :  S  Q  C  S  H  W  *  L  A  T  G  F  *  L  G  A  E  C  *  F  *  N  *  R  R  E  G  K  S  D  D  R  F  G  L  G  D  Y  E  S  L  S  *  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117035" stop="117460"/>
                    <exon start="120179" stop="120375"/>
                    <exon start="122649" stop="122784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDISFFSGAVTLICCFFAVAAACLTHRSKSVRTKGGEDSCNCACSHGSCGGGRFDKTSVLNGGSSGSSVFGGFEEEMVEKVSVTVAAEKLTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSLSPINGWKAYYAATRAIMNVNADFFNIIRERSVPAMERFWLNADYVKCFHASGECFTGHNAVIGSWQLAFNWEQNVDFEIRDVKARVMTDSAWVTMKAYLNMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120047" e_stop="120049"/>
            <exon e_start="120179" e_stop="120375"/>
            <exon e_start="122649" e_stop="123041"/>
            <exon e_start="123309" e_stop="123332"/>
            <exon e_start="123744" e_stop="123752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.068" acc_prob="0.931" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.440" e_score="0.625"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120047" e_stop="120049" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.986">
            <gDNA_intron_boundary i_start="120050" i_stop="120178" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="120179" e_stop="120375" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.068" acc_prob="0.931">
            <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="122649" e_stop="123041" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123042" i_stop="123308" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="123309" e_stop="123332" e_length="24"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.440">
            <gDNA_intron_boundary i_start="123333" i_stop="123743" i_length="411"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="123744" e_stop="123752" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120047" stop="120049"/>
              <exon start="120179" stop="120375"/>
              <exon start="122649" stop="123041"/>
              <exon start="123309" stop="123332"/>
              <exon start="123744" stop="123752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAG : GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGG : TCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGATCAGGTACCGTGACTAACGTGTTTGAACTCCATAATGGGAGATGGTACATGGTCCATCATCACTGCTCAGTGATGCTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAGAAGACAAACTGTGAAGAAGATTGATTATTCTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAGAATTGACTTCCCCGGGAATCTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCC : ATAAAATACAAAAGTAACTACATA : AAGAAGAAA</gDNA_template>
            <first_frame> K  :  D  F  T  L  E  Q  D  S  L  S  P  I  N  G  W  K  A  Y  Y  A  A  T  R  A  I  M  N  V  N  A  D  F  F  N  I  I  R  E  R  S  V  P  A  M  E  R  F  W  L  N  A  D  Y  V  K  C  F  H  A  S  G  E  C  F  T  G :   H  N  A  V  I  G  S  W  Q  L  A  F  N  W  E  Q  N  V  D  F  E  I  R  D  V  K  A  R  V  M  T  D  S  A  W  V  T  M  K  A  Y  L  N  M  G  S  G  T  V  T  N  V  F  E  L  H  N  G  R  W  Y  M  V  H  H  H  C  S  V  M  L  I  H  G  G  A  G  Q  Q  A  V  Q  G  *  D  *  R  R  Q  T  V  K  K  I  D  Y  S  F  E  N  W  K  V  V  *  R  S  F  I  V  E  L  T  S  P  G  I  S  I  K  L  F  L  C  S  S  C  F  L  F  P :   *  N  T  K  V  T  T  * :   R  R   </first_frame>
            <second_frame>  R :   I  S  H  W  S  R  I  L  C  L  Q  L  M  D  G  R  L  T  M  Q  L  Q  E  P  L  *  M  S  M  L  I  F  L  I  L  L  E  R  D  Q  F  Q  L  W  N  V  F  G  S  M  Q  I  T  *  S  V  F  M  P  L  E  S  A  L  R   : V  T  M  Q  S  L  V  A  G  N  W  L  L  T  G  S  R  M  L  I  L  K  L  E  T  *  R  Q  E  *  *  Q  I  R  L  G  *  L  *  K  L  I  L  I  W  D  Q  V  P  *  L  T  C  L  N  S  I  M  G  D  G  T  W  S  I  I  T  A  Q  *  C  S  F  M  E  V  L  G  N  K  L  C  R  D  R  I  K  E  D  K  L  *  R  R  L  I  I  L  L  K  I  G  K  W  Y  R  D  R  L  *  *  N  *  L  P  R  E  S  P  *  N  Y  F  Y  V  V  P  A  S  F  F   : H  K  I  Q  K  *  L  H   : K  E  E  </second_frame>
            <third_frame>    : G  F  H  I  G  A  G  F  S  V  S  N  *  W  M  E  G  L  L  C  S  Y  K  S  H  Y  E  C  Q  C  *  F  F  *  Y  Y  *  R  E  I  S  S  S  Y  G  T  F  L  A  Q  C  R  L  R  E  V  F  S  C  L  W  R  V  L  Y  G  :  S  Q  C  S  H  W  *  L  A  T  G  F  *  L  G  A  E  C  *  F  *  N  *  R  R  E  G  K  S  D  D  R  F  G  L  G  D  Y  E  S  L  S  *  Y  G  I  R  Y  R  D  *  R  V  *  T  P  *  W  E  M  V  H  G  P  S  S  L  L  S  D  A  H  S  W  R  C  W  A  T  S  C  A  G  I  G  L  K  K  T  N  C  E  E  D  *  L  F  F  *  K  L  E  S  G  I  E  I  V  Y  S  R  I  D  F  P  G  N  L  H  K  I  I  F  M  *  F  L  L  P  F  S  :  I  K  Y  K  S  N  Y  I  :  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120047" stop="120049"/>
                    <exon start="120179" stop="120375"/>
                    <exon start="122649" stop="122901"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFTLEQDSLSPINGWKAYYAATRAIMNVNADFFNIIRERSVPAMERFWLNADYVKCFHASGECFTGHNAVIGSWQLAFNWEQNVDFEIRDVKARVMTDSAWVTMKAYLNMGSGTVTNVFELHNGRWYMVHHHCSVMLIHGGAGQQAVQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="125974" PGL_stop="129173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125974" e_stop="126409"/>
            <exon e_start="127041" e_stop="127146"/>
            <exon e_start="128929" e_stop="129173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125974" e_stop="126409" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.960">
            <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127041" e_stop="127146" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128929" e_stop="129173" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125974" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126031" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126032" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126045" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126383" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA : TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG : GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</gDNA_template>
            <first_frame> V  I  I  K  T  *  I  E  R  V  F  S  S  T  S  P  I  E  R  N  S  A  P  A  K  N  L  L  K  F  H  N  F  L  R  N  G  F  *  N  F  Q  W  N  R  R  N  G  T  *  Y  P  Q  N  L  *  P  G  R  S  F  G  A  K  N  P  K  N  G  F  R  K  A  R  S  *  P  I  R  T  D  P  E  E  I  C  P  A  G  G  G  E  V  P  C  *  R  T  S  K  T  *  S  K  C  C  *  *  S  E  G  G  G  G  G  R  R  E  *  *  R  R  R  G  R  Q  S  E  K  Q  R  *  *  G  V  *  *  R  R  R  S  H  R  L  P   : I  V  A  K  E  K  S  D  C  Y  *  L  *  G  K  N  S  G  V  D  K  R  V  L  Q  Q  R  G  Q  G  V  A  Y  F  *  R :   D  K  F  D  S  *  A  M  G  N  F  Q  E  E  Y  S  W  S  *  T  S  H  Q  E  N  G  V  E  G  L  V  *  F  L  I  S  V  T  C  S  K  L  Y  L  K  T  *  N  T  R  R  H  V  F  L  G  K  L  V  *  L  L  V  N  M  Q  Y  Y  A  C  S  L  G  *  Y  R  F  S  L  I  *  </first_frame>
            <second_frame>  *  S  *  K  P  K  *  S  E  C  F  H  L  L  P  Q  L  S  E  I  P  P  L  Q  K  T  F  *  N  S  T  T  F  S  E  M  D  S  E  T  S  N  G  I  E  E  T  V  L  D  I  L  K  T  S  N  L  E  E  V  S  E  Q  K  I  R  R  M  A  S  E  K  L  G  L  D  L  S  E  P  T  R  K  K  F  V  R  Q  V  V  E  K  F  L  A  E  E  Q  A  K  R  E  A  N  A  A  D  E  V  K  E  E  E  E  D  D  E  N  D  E  E  E  E  D  G  K  V  K  S  S  G  D  K  E  Y  D  D  E  G  D  L  I  V  C  R  :  L  S  Q  K  R  R  V  T  V  T  D  F  R  G  K  T  L  V  S  I  R  E  Y  Y  S  K  E  G  K  E  L  P  T  S  K   : G  I  S  L  T  A  E  Q  W  A  T  F  K  K  N  I  P  G  V  E  Q  A  I  K  K  M  E  S  K  A  *  F  S  S  *  F  R  L  H  A  V  N  Y  I  *  R  L  K  T  L  G  D  M  F  F  W  V  N  W  F  N  F  W  L  T  C  S  I  M  P  A  L  L  A  N  T  D  F  L  *  F  E </second_frame>
            <third_frame>   N  H  K  N  L  N  R  A  S  V  F  I  Y  F  P  N  *  A  K  F  R  P  C  K  K  P  F  E  I  P  Q  L  S  P  K  W  I  L  K  L  P  M  E  S  K  K  R  Y  L  I  S  S  K  P  L  T  W  K  K  F  R  S  K  K  S  E  E  W  L  Q  K  S  *  V  L  T  Y  P  N  R  P  G  R  N  L  S  G  R  W  W  R  S  S  L  L  K  N  K  Q  N  V  K  Q  M  L  L  M  K  *  R  R  R  R  R  T  T  R  M  M  K  K  K  R  T  A  K  *  K  A  A  V  I  R  S  M  M  T  K  A  I  S  S  F  A  D :   C  R  K  R  E  E  *  L  L  L  T  L  G  E  K  L  W  C  R  *  E  S  T  T  A  K  R  A  R  S  C  L  L  L  K  :  G  *  V  *  Q  L  S  N  G  Q  L  S  R  R  I  F  L  E  L  N  K  P  S  R  K  W  S  R  R  L  S  L  V  L  D  F  G  Y  M  Q  *  T  I  F  E  D  L  K  H  *  E  T  C  F  F  G  *  I  G  L  T  F  G  *  H  A  V  L  C  L  L  S  W  L  I  Q  I  F  S  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126059" stop="126409"/>
                    <exon start="127041" stop="127146"/>
                    <exon start="128929" stop="129020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTTFSEMDSETSNGIEETVLDILKTSNLEEVSEQKIRRMASEKLGLDLSEPTRKKFVRQVVEKFLAEEQAKREANAADEVKEEEEDDENDEEEEDGKVKSSGDKEYDDEGDLIVCRLSQKRRVTVTDFRGKTLVSIREYYSKEGKELPTSKGISLTAEQWATFKKNIPGVEQAIKKMESKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="130275" PGL_stop="132713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130275" e_stop="130904"/>
            <exon e_start="131594" e_stop="132713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="130275" e_stop="130904" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130905" i_stop="131593" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="131594" e_stop="132713" e_length="1120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130275" stop="130792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130275" stop="130688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130276" stop="130734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130725" stop="130904"/>
              <exon start="131594" stop="132171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131594" stop="132392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131700" stop="132526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131736" stop="132580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131955" stop="132713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTCAAAAAAAAAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAG : GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</gDNA_template>
            <first_frame> V  I  Y  L  F  S  D  I  F  I  Y  K  K  K  L  Q  Y  Y  F  N  I  I  *  A  K  E  G  K  I  S  *  E  C  C  L  G  N  F  I  V  I  F  S  L  *  K  R  E  K  T  F  L  F  I  S  K  F  K  S  S  I  H  N  *  S  Y  I  T  F  Q  F  I  L  F  P  H  G  *  G  *  L  M  K  S  N  N  D  N  I  Y  M  P  R  V  L  L  R  S  I  H  P  K  S  C  L  N  S  *  L  V  V  *  I  P  I  G  N  T  K  H  H  I  Y  H  F  *  N  T  K  L  L  S  I  C  T  P  P  K  L  V  P  *  H  N  L  E  K  T  S  K  K  K  K  N  I  F  H  *  N  S  K  *  I  F  S  S  M  G  C  A  S  S  K  R  I  K  V  A  I  D  V  Y  R  P  P  P  T  S  F  A  V  F  D  I  N  S  I  E  E  P  W  L  K  S  A  N  N  N  N  K  :  V  E  E  N  E  L  D  Q  D  E  L  D  E  D  E  K  P  I  K  V  A  Q  P  I  L  E  K  L  N  T  S  I  D  D  S  P  K  S  W  D  E  V  S  K  A  L  E  D  L  K  P  T  L  Q  N  P  P  P  Q  K  S  P  K  K  P  L  L  A  L  P  A  P  P  P  P  P  S  E  A  A  E  D  G  D  G  S  P  K  R  K  I  P  R  K  S  F  S  F  H  T  L  E  E  L  E  S  K  L  S  S  K  D  A  K  K  N  N  E  V  I  K  K  N  E  E  N  K  K  F  Q  R  F  N  K  K  N  D  T  Q  I  A  V  H  N  G  E  V  E  H  Q  R  T  H  S  D  E  G  Y  K  P  V  K  E  N  I  F  L  L  R  D  K  M  E  R  E  K  E  G  K  V  P  N  F  I  K  F  N  P  L  S  D  Y  P  E  K  C  P  P  R  G  D  D  S  L  V  I  Y  T  T  S  L  G  G  V  R  R  T  F  E  D  C  N  K  L  R  L  I  L  E  S  H  R  V  V  F  D  E  R  D  V  A  L  H  G  E  F  R  Q  E  L  K  E  L  L  G  D  G  E  D  A  G  V  P  R  L  F  V  K  G  R  Y  I  G  G  V  E  E  V  V  H  L  N  E  T  K  K  L  G  R  I  L  N  W  A  R  V  E  R  G  L  G  R  L  G  C  E  G  C  G  G  A  R  F  V  P  C  F  D  C  G  G  S  C  K  V  V  N  G  D  V  K  E  R  C  P  K  C  N  E  N  G  L  I  H  C  P  I  C  N  *  I  I  V  M  Y  Y  C  T  H  T  L  N  Q  *  I  H  S  D  V  V  T  L  *  </first_frame>
            <second_frame>  L  F  I  C  F  L  I  F  L  Y  I  R  R  N  Y  S  I  I  L  I  *  Y  K  Q  K  K  G  K  S  V  E  N  V  A  *  E  T  L  L  S  Y  F  H  Y  E  K  E  K  K  H  F  S  L  Y  Q  N  S  K  V  P  S  T  I  R  V  T  L  L  F  N  S  F  Y  F  L  M  V  K  D  N  *  *  R  V  T  M  I  T  Y  I  C  H  V  S  S  *  D  P  F  I  Q  N  L  V  *  I  L  N  W  L  S  K  Y  Q  L  A  I  P  N  T  T  Y  I  I  F  K  I  P  N  Y  Y  P  Y  V  L  L  L  S  *  F  H  S  I  T  *  K  K  L  Q  K  K  K  K  T  Y  F  I  E  I  Q  S  K  F  F  Q  V  W  V  V  P  H  Q  R  E  *  R  L  P  S  T  S  T  V  L  R  R  R  A  S  P  S  S  I  S  T  P  L  K  N  H  G  S  K  V  Q  T  T  T  T  R :   *  K  K  M  S  W  I  R  T  S  *  T  K  M  R  S  Q  *  K  *  H  N  Q  F  *  K  N  S  T  L  L  L  M  I  L  Q  N  H  G  M  K  L  A  K  L  *  K  I  *  N  P  L  Y  K  T  H  H  H  K  N  H  L  K  N  P  S  L  P  Y  R  R  R  L  R  R  H  Q  R  R  R  K  T  A  T  V  H  Q  K  E  K  F  Q  E  R  V  F  P  F  I  P  L  K  N  L  N  P  N  Y  H  Q  K  M  P  K  R  T  M  K  *  S  R  K  M  R  K  I  K  N  S  N  D  S  I  K  K  M  I  H  K  L  L  F  I  M  G  K  *  N  I  K  G  L  T  Q  M  K  G  T  S  Q  *  K  R  I  Y  F  C  *  G  T  K  W  K  G  K  K  K  G  K  F  Q  I  L  *  S  L  T  L  *  V  T  T  P  K  S  A  R  H  V  A  M  T  H  W  S  S  T  R  R  R  *  V  A  C  V  V  R  L  R  I  V  I  S  *  G  *  F  W  N  P  I  G  W  F  S  T  S  V  T  W  H  C  M  A  S  F  V  R  S  *  R  S  C  L  E  M  G  R  T  R  E  Y  R  G  C  L  *  R  G  G  T  L  V  E  W  R  K  W  C  T  *  T  R  R  R  N  S  G  G  Y  *  I  G  L  G  W  R  G  V  W  G  G  *  D  V  K  G  A  E  V  L  G  L  C  H  V  L  I  V  E  G  V  A  K  L  *  M  G  M  L  R  R  D  V  L  S  V  M  R  M  V  *  F  I  A  L  F  A  I  E  *  L  L  C  I  I  V  R  I  H  *  I  N  E  Y  I  V  M  L  L  L  C  E </second_frame>
            <third_frame>   Y  L  F  V  F  *  Y  F  Y  I  *  E  E  I  T  V  L  F  *  Y  N  I  S  K  R  R  E  N  Q  L  R  M  L  L  R  K  L  Y  C  H  I  F  I  M  K  K  R  K  N  I  S  L  Y  I  K  I  Q  K  F  H  P  Q  L  E  L  H  Y  F  S  I  H  F  I  S  S  W  L  R  I  I  D  E  E  *  Q  *  *  H  I  Y  A  T  C  P  L  K  I  H  S  S  K  I  L  S  K  F  L  I  G  C  L  N  T  N  W  Q  Y  Q  T  P  H  I  S  F  L  K  Y  Q  T  T  I  H  M  Y  S  S  *  V  S  S  I  A  *  L  R  K  N  F  K  K  K  K  K  H  I  S  L  K  F  K  V  N  F  F  K  Y  G  L  C  L  I  K  E  N  K  G  C  H  R  R  L  P  S  S  A  D  E  L  R  R  L  R  Y  Q  L  H  *  R  T  M  A  Q  K  C  K  Q  Q  Q  Q   : G  R  R  K  *  V  G  S  G  R  A  R  R  R  *  E  A  N  K  S  S  T  T  N  S  R  K  T  Q  H  F  Y  *  *  F  S  K  I  M  G  *  S  *  Q  S  F  R  R  F  K  T  H  S  T  K  P  T  T  T  K  I  T  *  K  T  P  P  C  P  T  G  A  A  S  A  A  I  R  G  G  G  R  R  R  R  F  T  K  K  K  N  S  K  K  E  F  F  L  S  Y  P  *  R  T  *  I  Q  I  I  I  K  R  C  Q  K  E  Q  *  S  D  Q  E  K  *  G  K  *  K  I  P  T  I  Q  *  K  K  *  Y  T  N  C  C  S  *  W  G  S  R  T  S  K  D  S  L  R  *  R  V  Q  A  S  K  R  E  Y  I  F  V  E  G  Q  N  G  K  G  K  R  R  E  S  S  K  F  Y  K  V  *  P  F  K  *  L  P  R  K  V  P  A  T  W  R  *  L  I  G  H  L  H  D  V  A  R  W  R  A  S  Y  V  *  G  L  *  *  V  E  V  N  F  G  I  P  *  G  G  F  R  R  A  *  R  G  I  A  W  R  V  S  S  G  A  E  G  V  A  W  R  W  G  G  R  G  S  T  A  V  V  C  E  G  E  V  H  W  W  S  G  G  S  G  A  P  E  R  D  E  E  T  R  E  D  I  E  L  G  *  G  G  E  G  S  G  E  V  R  M  *  R  V  R  R  C  *  V  C  A  M  F  *  L  W  R  E  L  Q  S  C  E  W  G  C  *  G  E  M  S  *  V  *  *  E  W  F  D  S  L  P  Y  L  Q  L  N  N  C  Y  V  L  L  Y  A  Y  I  K  S  M  N  T  *  *  C  C  Y  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130761" stop="130904"/>
                    <exon start="131594" stop="132643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSMGCASSKRIKVAIDVYRPPPTSFAVFDINSIEEPWLKSANNNNKVEENELDQDELDEDEKPIKVAQPILEKLNTSIDDSPKSWDEVSKALEDLKPTLQNPPPQKSPKKPLLALPAPPPPPSEAAEDGDGSPKRKIPRKSFSFHTLEELESKLSSKDAKKNNEVIKKNEENKKFQRFNKKNDTQIAVHNGEVEHQRTHSDEGYKPVKENIFLLRDKMEREKEGKVPNFIKFNPLSDYPEKCPPRGDDSLVIYTTSLGGVRRTFEDCNKLRLILESHRVVFDERDVALHGEFRQELKELLGDGEDAGVPRLFVKGRYIGGVEEVVHLNETKKLGRILNWARVERGLGRLGCEGCGGARFVPCFDCGGSCKVVNGDVKERCPKCNENGLIHCPICN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130334" stop="130528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNISKRRENQLRMLLRKLYCHIFIMKKRKNISLYIKIQKFHPQLELHYFSIHFISSWLRIIDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="136307" PGL_stop="136752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136307" e_stop="136752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="136307" e_stop="136752" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136307" stop="136628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136307" stop="136600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136307" stop="136457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136308" stop="136752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGTCTTTTTCTCTGCAATATTTAAAGTAAAATGTTTGTAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATATACTTCTGTGTATAAAGCGAGAGAGGCGAGAATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGGCAAATTTTTTCCAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  S  F  S  L  Q  Y  L  K  *  N  V  C  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  Y  F  C  V  *  S  E  R  G  E  N  G  R  V  A  S  E  T  S  G  R  E  T  P  G  K  F  F  P  T  F  A  M  E  H  N  *  I  K  L  *  L  F  H  L  I  *  V  I   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E  A  R  M  G  E  W  R  A  R  L  L  G  E  R  R  L  A  N  F  F  Q  R  L  L  W  S  T  I  K  S  N  S  S  Y  S  I  *  F  R  L  L  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  K  V  K  C  L  *  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  I  L  L  C  I  K  R  E  R  R  E  W  E  S  G  E  R  D  F  W  E  R  D  A  W  Q  I  F  S  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136522" stop="136752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYNTKIYIFACVYTIFSRFIQNRNRNYILLCIKRERREWESGERDFWERDAWQIFSNVCYGAQLNQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136530" stop="136739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEDIHFCMCIYNFLSLYTKQKQKLYTSVYKAREARMGEWRARLLGERRLANFFQRLLWSTIKSNSSYSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="140561" PGL_stop="136464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140561" e_stop="140483"/>
            <exon e_start="140046" e_stop="139936"/>
            <exon e_start="139848" e_stop="139459"/>
            <exon e_start="139239" e_stop="139217"/>
            <exon e_start="136480" e_stop="136464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.962"/>
          <exon-intron don_prob="0.494" acc_prob="0.915" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-intron don_prob="0.518" acc_prob="0.959" e_score="0.826"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="140561" e_stop="140483" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="140482" i_stop="140047" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="140046" e_stop="139936" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.494" acc_prob="0.915">
            <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="139848" e_stop="139459" e_length="390"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139458" i_stop="139240" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="0.826">
            <gDNA_exon_boundary e_start="139239" e_stop="139217" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.518" acc_prob="0.959">
            <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736"/>
          </intron>
          <exon e_serial="5" e_score="0.706">
            <gDNA_exon_boundary e_start="136480" e_stop="136464" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140561" stop="140483"/>
              <exon start="140046" stop="139936"/>
              <exon start="139848" stop="139459"/>
              <exon start="139239" stop="139217"/>
              <exon start="136480" stop="136464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139847" stop="139510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTTGGTGGGTCAAATATTGATCCATCGGCCTGGGAGGACAAGAAGAACCCTGGTGAATCTCGCTTTCCTGCTCAG : GTTCGTGTCGTGACAAGGAAAGTCTGTGAACCACTTGAAGAGGATTCATTCAGGCCAGTCCTTCACCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAGAG : GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGC : TTTTAGAAAGAAAAAAAAAAGAG : AGAAAAAGACCAAAGAA</gDNA_template>
            <first_frame> K  L  W  W  V  K  Y  *  S  I  G  L  G  G  Q  E  E  P  W  *  I  S  L  S  C  S   : G  S  C  R  D  K  E  S  L  *  T  T  *  R  G  F  I  Q  A  S  P  S  P  L  R  W  P  *  I  P  P  *  A  K  C  S  R   : G  Y  F  S  S  R  H  F  *  R  E  Q  E  L  N  E  C  S  C  I  T  S  R  E  W  T  I  Y  H  Y  K  G  R  K  K  K  L  I  R  K  K  E  F  A  S  S  N  T  E  E  S  L  Q  S  R  K  K  K  T  I  Y  C  I  *  I  Y  T  *  M  Q  N  I  I  I  W  K  N  T  F  C  V  E  T  K  I  L  L  Y  L  L  Y  C  V  I  Q  Q  E  F  A  V  *  *  *  V  K  Y  E  *  K  T  S  Y  I  Y  V  M  D  H  N  V  W  L  L  I  A  I  V  S  S  L   : L  L  E  R  K  K  K  E  :  R  K  R  P  K   </first_frame>
            <second_frame>  S  F  G  G  S  N  I  D  P  S  A  W  E  D  K  K  N  P  G  E  S  R  F  P  A  Q  :  V  R  V  V  T  R  K  V  C  E  P  L  E  E  D  S  F  R  P  V  L  H  H  Y  D  G  P  K  F  R  L  E  L  N  V  P  E  :  A  I  S  L  L  D  I  F  E  E  N  K  N  *  M  N  V  L  V  L  Q  A  E  N  G  Q  Y  T  I  I  K  E  E  K  K  S  *  L  E  K  K  S  L  L  L  V  I  L  K  R  V  C  R  A  E  K  K  K  L  S  I  V  Y  R  Y  I  H  K  C  R  I  *  L  S  G  K  T  L  F  V  W  K  Q  K  Y  Y  Y  I  Y  Y  I  V  *  S  S  R  N  L  L  Y  N  N  K  *  N  M  S  K  K  Q  V  I  F  M  L  W  I  I  M  F  G  Y  *  *  L  L  F  P  L  C  :  F  *  K  E  K  K  K  R :   E  K  D  Q  R  </second_frame>
            <third_frame>   A  L  V  G  Q  I  L  I  H  R  P  G  R  T  R  R  T  L  V  N  L  A  F  L  L  R :   F  V  S  *  Q  G  K  S  V  N  H  L  K  R  I  H  S  G  Q  S  F  T  I  T  M  A  L  N  S  A  L  S  *  M  F  Q  R :   L  F  L  F  *  T  F  L  K  R  T  R  T  K  *  M  F  L  Y  Y  K  Q  R  M  D  N  I  P  L  *  R  K  K  K  K  V  D  *  K  K  R  V  C  F  *  *  Y  *  R  E  F  A  E  Q  K  K  K  N  Y  L  L  Y  I  D  I  Y  I  N  A  E  Y  N  Y  L  E  K  H  F  L  C  G  N  K  N  I  I  I  F  T  I  L  C  N  P  A  G  I  C  C  I  I  I  S  E  I  *  V  K  N  K  L  Y  L  C  Y  G  S  *  C  L  V  I  N  S  Y  C  F  L  F  A :   F  R  K  K  K  K  R   : E  K  K  T  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140560" stop="140483"/>
                    <exon start="140046" stop="139936"/>
                    <exon start="139848" stop="139807"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFGGSNIDPSAWEDKKNPGESRFPAQVRVVTRKVCEPLEEDSFRPVLHHYDGPKFRLELNVPEAISLLDIFEENKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="139847" e_stop="139504"/>
            <exon e_start="138019" e_stop="138000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.187" e_score="1.000"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139847" e_stop="139504" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.187">
            <gDNA_intron_boundary i_start="139503" i_stop="138020" i_length="1484"/>
          </intron>
          <exon e_serial="2" e_score="0.650">
            <gDNA_exon_boundary e_start="138019" e_stop="138000" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139847" stop="139510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139765" stop="139504"/>
              <exon start="138019" stop="138000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTA : TACAATAAAATACAATACAA</gDNA_template>
            <first_frame> L  F  L  F  *  T  F  L  K  R  T  R  T  K  *  M  F  L  Y  Y  K  Q  R  M  D  N  I  P  L  *  R  K  K  K  K  V  D  *  K  K  R  V  C  F  *  *  Y  *  R  E  F  A  E  Q  K  K  K  N  Y  L  L  Y  I  D  I  Y  I  N  A  E  Y  N  Y  L  E  K  H  F  L  C  G  N  K  N  I  I  I  F  T  I  L  C  N  P  A  G  I  C  C  I  I  I  S  E  I  *  V  K  N  K  L  Y  L  C  Y :   T  I  K  Y  N  T  </first_frame>
            <second_frame>  Y  F  S  S  R  H  F  *  R  E  Q  E  L  N  E  C  S  C  I  T  S  R  E  W  T  I  Y  H  Y  K  G  R  K  K  K  L  I  R  K  K  E  F  A  S  S  N  T  E  E  S  L  Q  S  R  K  K  K  T  I  Y  C  I  *  I  Y  T  *  M  Q  N  I  I  I  W  K  N  T  F  C  V  E  T  K  I  L  L  Y  L  L  Y  C  V  I  Q  Q  E  F  A  V  *  *  *  V  K  Y  E  *  K  T  S  Y  I  Y  V   : I  Q  *  N  T  I  Q </second_frame>
            <third_frame>   I  S  L  L  D  I  F  E  E  N  K  N  *  M  N  V  L  V  L  Q  A  E  N  G  Q  Y  T  I  I  K  E  E  K  K  S  *  L  E  K  K  S  L  L  L  V  I  L  K  R  V  C  R  A  E  K  K  K  L  S  I  V  Y  R  Y  I  H  K  C  R  I  *  L  S  G  K  T  L  F  V  W  K  Q  K  Y  Y  Y  I  Y  Y  I  V  *  S  S  R  N  L  L  Y  N  N  K  *  N  M  S  K  K  Q  V  I  F  M  L  :  Y  N  K  I  Q  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="139949" e_stop="139936"/>
            <exon e_start="139848" e_stop="139505"/>
            <exon e_start="139233" e_stop="139217"/>
            <exon e_start="136480" e_stop="136476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.494" acc_prob="0.915" e_score="0.929"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.959" e_score="0.824"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="139949" e_stop="139936" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.494" acc_prob="0.915">
            <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="139848" e_stop="139505" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139504" i_stop="139234" i_length="271"/>
          </intron>
          <exon e_serial="3" e_score="0.824">
            <gDNA_exon_boundary e_start="139233" e_stop="139217" e_length="17"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.959">
            <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="136480" e_stop="136476" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139949" stop="139936"/>
              <exon start="139848" stop="139505"/>
              <exon start="139233" stop="139217"/>
              <exon start="136480" stop="136476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139847" stop="139510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATGTTCCAGAG : GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTT : AAAGAAAAAAAAAAGAG : AGAAA</gDNA_template>
            <first_frame> *  M  F  Q  R :   L  F  L  F  *  T  F  L  K  R  T  R  T  K  *  M  F  L  Y  Y  K  Q  R  M  D  N  I  P  L  *  R  K  K  K  K  V  D  *  K  K  R  V  C  F  *  *  Y  *  R  E  F  A  E  Q  K  K  K  N  Y  L  L  Y  I  D  I  Y  I  N  A  E  Y  N  Y  L  E  K  H  F  L  C  G  N  K  N  I  I  I  F  T  I  L  C  N  P  A  G  I  C  C  I  I  I  S  E  I  *  V  K  N  K  L  Y  L  C   : *  R  K  K  K  E  :  R   </first_frame>
            <second_frame>  K  C  S  R   : G  Y  F  S  S  R  H  F  *  R  E  Q  E  L  N  E  C  S  C  I  T  S  R  E  W  T  I  Y  H  Y  K  G  R  K  K  K  L  I  R  K  K  E  F  A  S  S  N  T  E  E  S  L  Q  S  R  K  K  K  T  I  Y  C  I  *  I  Y  T  *  M  Q  N  I  I  I  W  K  N  T  F  C  V  E  T  K  I  L  L  Y  L  L  Y  C  V  I  Q  Q  E  F  A  V  *  *  *  V  K  Y  E  *  K  T  S  Y  I  Y  V  :  K  E  K  K  K  R :   E  </second_frame>
            <third_frame>   N  V  P  E  :  A  I  S  L  L  D  I  F  E  E  N  K  N  *  M  N  V  L  V  L  Q  A  E  N  G  Q  Y  T  I  I  K  E  E  K  K  S  *  L  E  K  K  S  L  L  L  V  I  L  K  R  V  C  R  A  E  K  K  K  L  S  I  V  Y  R  Y  I  H  K  C  R  I  *  L  S  G  K  T  L  F  V  W  K  Q  K  Y  Y  Y  I  Y  Y  I  V  *  S  S  R  N  L  L  Y  N  N  K  *  N  M  S  K  K  Q  V  I  F  M  L :   K  K  K  K  R   : E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="139951" e_stop="139936"/>
            <exon e_start="139848" e_stop="139493"/>
            <exon e_start="139233" e_stop="139217"/>
            <exon e_start="138019" e_stop="138000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.494" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.187" e_score="0.824"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139951" e_stop="139936" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.494" acc_prob="0.915">
            <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="139848" e_stop="139493" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139492" i_stop="139234" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.824">
            <gDNA_exon_boundary e_start="139233" e_stop="139217" e_length="17"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.187">
            <gDNA_intron_boundary i_start="139216" i_stop="138020" i_length="1197"/>
          </intron>
          <exon e_serial="4" e_score="0.650">
            <gDNA_exon_boundary e_start="138019" e_stop="138000" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139951" stop="139936"/>
              <exon start="139848" stop="139493"/>
              <exon start="139233" stop="139217"/>
              <exon start="138019" stop="138000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139847" stop="139510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAAATGTTCCAGAG : GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAAT : AAAGAAAAAAAAAAGAG : TACAATAAAATACAATACAA</gDNA_template>
            <first_frame> A  K  C  S  R   : G  Y  F  S  S  R  H  F  *  R  E  Q  E  L  N  E  C  S  C  I  T  S  R  E  W  T  I  Y  H  Y  K  G  R  K  K  K  L  I  R  K  K  E  F  A  S  S  N  T  E  E  S  L  Q  S  R  K  K  K  T  I  Y  C  I  *  I  Y  T  *  M  Q  N  I  I  I  W  K  N  T  F  C  V  E  T  K  I  L  L  Y  L  L  Y  C  V  I  Q  Q  E  F  A  V  *  *  *  V  K  Y  E  *  K  T  S  Y  I  Y  V  M  D  H  N  :  K  E  K  K  K  S :   T  I  K  Y  N  T  </first_frame>
            <second_frame>  L  N  V  P  E  :  A  I  S  L  L  D  I  F  E  E  N  K  N  *  M  N  V  L  V  L  Q  A  E  N  G  Q  Y  T  I  I  K  E  E  K  K  S  *  L  E  K  K  S  L  L  L  V  I  L  K  R  V  C  R  A  E  K  K  K  L  S  I  V  Y  R  Y  I  H  K  C  R  I  *  L  S  G  K  T  L  F  V  W  K  Q  K  Y  Y  Y  I  Y  Y  I  V  *  S  S  R  N  L  L  Y  N  N  K  *  N  M  S  K  K  Q  V  I  F  M  L  W  I  I  I :   K  K  K  K  R   : V  Q  *  N  T  I  Q </second_frame>
            <third_frame>   *  M  F  Q  R :   L  F  L  F  *  T  F  L  K  R  T  R  T  K  *  M  F  L  Y  Y  K  Q  R  M  D  N  I  P  L  *  R  K  K  K  K  V  D  *  K  K  R  V  C  F  *  *  Y  *  R  E  F  A  E  Q  K  K  K  N  Y  L  L  Y  I  D  I  Y  I  N  A  E  Y  N  Y  L  E  K  H  F  L  C  G  N  K  N  I  I  I  F  T  I  L  C  N  P  A  G  I  C  C  I  I  I  S  E  I  *  V  K  N  K  L  Y  L  C  Y  G  S  *   : *  R  K  K  K  E  :  Y  N  K  I  Q  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="140547" e_stop="140483"/>
            <exon e_start="140046" e_stop="139936"/>
            <exon e_start="139848" e_stop="139456"/>
            <exon e_start="139233" e_stop="139217"/>
            <exon e_start="136480" e_stop="136469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.494" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.518" acc_prob="0.959" e_score="0.824"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="140547" e_stop="140483" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="140482" i_stop="140047" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140046" e_stop="139936" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.494" acc_prob="0.915">
            <gDNA_intron_boundary i_start="139935" i_stop="139849" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="139848" e_stop="139456" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139455" i_stop="139234" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.824">
            <gDNA_exon_boundary e_start="139233" e_stop="139217" e_length="17"/>
          </exon>
          <intron i_serial="4" don_prob="0.518" acc_prob="0.959">
            <gDNA_intron_boundary i_start="139216" i_stop="136481" i_length="2736"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="136480" e_stop="136469" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140547" stop="140483"/>
              <exon start="140046" stop="139936"/>
              <exon start="139848" stop="139456"/>
              <exon start="139233" stop="139217"/>
              <exon start="136480" stop="136469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284870" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139847" stop="139510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATATTGATCCATCGGCCTGGGAGGACAAGAAGAACCCTGGTGAATCTCGCTTTCCTGCTCAG : GTTCGTGTCGTGACAAGGAAAGTCTGTGAACCACTTGAAGAGGATTCATTCAGGCCAGTCCTTCACCATTACGATGGCCCTAAATTCCGCCTTGAGCTAAATGTTCCAGAG : GCTATTTCTCTTCTAGACATTTTTGAAGAGAACAAGAACTAAATGAATGTTCTTGTATTACAAGCAGAGAATGGACAATATACCATTATAAAGGAAGAAAAAAAAAGTTGATTAGAAAAAAAGAGTTTGCTTCTAGTAATACTGAAGAGAGTTTGCAGAGCAGAAAAAAAAAAACTATCTATTGTATATAGATATATACATAAATGCAGAATATAATTATCTGGAAAAACACTTTTTGTGTGGAAACAAAAATATTATTATATTTACTATATTGTGTAATCCAGCAGGAATTTGCTGTATAATAATAAGTGAAATATGAGTAAAAAACAAGTTATATTTATGTTATGGATCATAATGTTTGGTTATTAATAGCTATTGTTTCCTCTTTGCTCT : AAAGAAAAAAAAAAGAG : AGAAAAAGACCA</gDNA_template>
            <first_frame> Q  I  L  I  H  R  P  G  R  T  R  R  T  L  V  N  L  A  F  L  L  R :   F  V  S  *  Q  G  K  S  V  N  H  L  K  R  I  H  S  G  Q  S  F  T  I  T  M  A  L  N  S  A  L  S  *  M  F  Q  R :   L  F  L  F  *  T  F  L  K  R  T  R  T  K  *  M  F  L  Y  Y  K  Q  R  M  D  N  I  P  L  *  R  K  K  K  K  V  D  *  K  K  R  V  C  F  *  *  Y  *  R  E  F  A  E  Q  K  K  K  N  Y  L  L  Y  I  D  I  Y  I  N  A  E  Y  N  Y  L  E  K  H  F  L  C  G  N  K  N  I  I  I  F  T  I  L  C  N  P  A  G  I  C  C  I  I  I  S  E  I  *  V  K  N  K  L  Y  L  C  Y  G  S  *  C  L  V  I  N  S  Y  C  F  L  F  A  L :   K  K  K  K  R   : E  K  K  T  </first_frame>
            <second_frame>  K  Y  *  S  I  G  L  G  G  Q  E  E  P  W  *  I  S  L  S  C  S   : G  S  C  R  D  K  E  S  L  *  T  T  *  R  G  F  I  Q  A  S  P  S  P  L  R  W  P  *  I  P  P  *  A  K  C  S  R   : G  Y  F  S  S  R  H  F  *  R  E  Q  E  L  N  E  C  S  C  I  T  S  R  E  W  T  I  Y  H  Y  K  G  R  K  K  K  L  I  R  K  K  E  F  A  S  S  N  T  E  E  S  L  Q  S  R  K  K  K  T  I  Y  C  I  *  I  Y  T  *  M  Q  N  I  I  I  W  K  N  T  F  C  V  E  T  K  I  L  L  Y  L  L  Y  C  V  I  Q  Q  E  F  A  V  *  *  *  V  K  Y  E  *  K  T  S  Y  I  Y  V  M  D  H  N  V  W  L  L  I  A  I  V  S  S  L  L   : *  R  K  K  K  E  :  R  K  R  P </second_frame>
            <third_frame>   N  I  D  P  S  A  W  E  D  K  K  N  P  G  E  S  R  F  P  A  Q  :  V  R  V  V  T  R  K  V  C  E  P  L  E  E  D  S  F  R  P  V  L  H  H  Y  D  G  P  K  F  R  L  E  L  N  V  P  E  :  A  I  S  L  L  D  I  F  E  E  N  K  N  *  M  N  V  L  V  L  Q  A  E  N  G  Q  Y  T  I  I  K  E  E  K  K  S  *  L  E  K  K  S  L  L  L  V  I  L  K  R  V  C  R  A  E  K  K  K  L  S  I  V  Y  R  Y  I  H  K  C  R  I  *  L  S  G  K  T  L  F  V  W  K  Q  K  Y  Y  Y  I  Y  Y  I  V  *  S  S  R  N  L  L  Y  N  N  K  *  N  M  S  K  K  Q  V  I  F  M  L  W  I  I  M  F  G  Y  *  *  L  L  F  P  L  C  S  :  K  E  K  K  K  R :   E  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140545" stop="140483"/>
                    <exon start="140046" stop="139936"/>
                    <exon start="139848" stop="139807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIDPSAWEDKKNPGESRFPAQVRVVTRKVCEPLEEDSFRPVLHHYDGPKFRLELNVPEAISLLDIFEENKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 272 chains have been computed
$ 
$ memory statistics:
$ 2563872 bytes spliced alignments in total
$ 216 spliced alignments have been stored
$ 11869 bytes was the average size of a spliced alignment
$ 38648 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 306 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:29:22
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