<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-20 02:33:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734645" ref_strand="+" ref_description="SGN-E734645 [LB13AH05]">
      <seq>cttttctgaataaaatacgaaactgtacttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtaggcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgcatacttgctactcttaaccgttgtcggttatatattatcagcagagagtgaaggattgtggctaaaaaaaaaaaaaaaaaaaaaaaaacttcaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2271" stop="6223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2571" g_stop="2735" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="343" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="500" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5923" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="742" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="743" polyA_stop="766"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E734645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2571" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAA</genome_strand>
        <mrna_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734680" ref_strand="+" ref_description="SGN-E734680 [LB13BC04]">
      <seq>cttttctgaataaaatacgaaactgtacttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtaggcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgcatacttgctactcttaaccgttgtcggttatatattatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2271" stop="6199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2571" g_stop="2735" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="343" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="500" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5899" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="718" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E734680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2571" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAG</genome_strand>
        <mrna_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241148" ref_strand="+" ref_description="SGN-E241148 [cLED-26-N1]">
      <seq>gaataaaatacgaaactgtacttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2278" stop="3573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2578" g_stop="2735" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="336" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3273" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="410" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E241148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2578" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAA</genome_strand>
        <mrna_strand>GAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744547" ref_strand="+" ref_description="SGN-E744547 [GI|6018698]">
      <seq>aattccgtacttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtaggcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgcatacttgctactcttaaccgttgtcggttatatattatcagcagagagtgaaggattgtggctaagctattcttaaagtcaccagcctttggtaagttgcatggactaatcttggatgatatatgctacaattacctataacctttgctagcgttccctagtgagttgaaatctttattaaaaaccaaatcgatgtactgataagactcggtgtaaaagaatttgtgcaattgaaaaccaattaggtacattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2293" stop="6414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2589" g_stop="2735" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="325" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="482" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="6118" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="919" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E744547" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2589" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="6118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAATTTG</genome_strand>
        <mrna_strand>AATTCCGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377730" ref_strand="+" ref_description="SGN-E377730 [TUS-20-O4]">
      <seq>acttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtaggcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2297" stop="6159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2597" g_stop="2735" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="317" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="474" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5859" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="652" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E377730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2597" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCA</genome_strand>
        <mrna_strand>ACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231929" ref_strand="+" ref_description="SGN-E231929 [cLED-7-H24]">
      <seq>acttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgactgggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatgagcacaacaagcaagggagaggaagaaagcatatttgattgatctggaagcaagggtgaaggaattggaaacaacgaatgcagaacttgaagagaggttgtctacttcgccaaatgagaaccaaatgcttagacatatactgaagaacacaacagcatgtgcacaggaagggaggaagtanacatatgatcgatcttatgtcgatatgtcagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2297" stop="6062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2597" g_stop="2735" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="317" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="474" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5762" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="555" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E231929" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2597" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTC</genome_strand>
        <mrna_strand>ACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACTGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATGAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATTGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAACGAATGCAGAACTTGAAGAGAGGTTGTCTACTTCGCCAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCATGTGCACAGGAAGGGAGGAAGTANACATATGATCGATCTTATGTCGATATGTCAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346307" ref_strand="+" ref_description="SGN-E346307 [cTOF-23-D20]">
      <seq>ttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtangcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgcatacttgctactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2299" stop="6173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2599" g_stop="2735" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="315" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="472" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5873" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="664" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E346307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2599" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTT</genome_strand>
        <mrna_strand>TTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTANGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251111" ref_strand="+" ref_description="SGN-E251111 [cLEG-17-N1]">
      <seq>cttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtcttactttgcaaaatgagaaccaaatgcttagacatatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2305" stop="3659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2605" g_stop="2735" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="309" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="467" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="3457" i_length="101">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3458" g_stop="3464" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="474" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E251111" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2605" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="3458" e_stop="3464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTC-TACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTC</genome_strand>
        <mrna_strand>CTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................ATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482038" ref_strand="+" ref_description="SGN-E482038 [cSTD-20-J19]">
      <seq>caaaactctactttcccttaattaagtgtatctaagcttgtttttttgagtgtagaggaaaatgcaagagcaagcgacaagttctattgccgctagttcactaccttcaagtagtgagagatcttctagttcagctttacatcttgaactcaaagaaggtatggagagtgatgatgagatcagaagagtaccggagatgggcggagaagcgacgggaacgatgtcagcttctggcagagatggagcttcggccgccggtcaagctcaaccatcagctgggactcagaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaaggttgttgagaaatagagtgtcagcacagcaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctacattgcaaaatgagaaccaaatgcttagacatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2315" stop="3659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2615" g_stop="2735" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="158" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="336" r_length="178" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="493" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="3457" i_length="101">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3458" g_stop="3462" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="498" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E482038" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2615" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="3458" e_stop="3462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACT</genome_strand>
        <mrna_strand>TGTTTTTTT-GAGTGTAGAGGAAAATGCAAGAGCAAGCGACAAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCTTCTAGTTCAGCTTTACATCTTGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTACCGGAGATGGGCGGAGAAGCGACGGGAACGATGTCAGCTTCTGGCAGAGATGGAGCTTCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAGAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................GTTGTTGAGAAATAGAGTGTCAGCACAGCAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACATTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................ATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289418" ref_strand="+" ref_description="SGN-E289418 [cLET-3-O9]">
      <seq>gagagatcatctagttcagctctacatcatgaactcaaagaatgtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcacgggtgaaggaattggcaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactggagaacacaacagcaggtgcacatgaagggaggaagtggacatatgatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2393" stop="6039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2693" g_stop="2735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="221" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="378" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="5739" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="436" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E289418" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2693" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="5739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGAT</genome_strand>
        <mrna_strand>GAGAGATCATCTAGTTCAGCTCTACATCATGAACTCAAAGAAT..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCACGGGTGAAGGAATTGGCAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGGAGAACACAACAGCAGGTGCACATGAAGGGAGGAAGTGGACATATGATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353244" ref_strand="+" ref_description="SGN-E353244 [cTOS-14-D6]">
      <seq>ctttctgctatgcttatgctattataggatataggagagtgactgtaaacacacaacttccaccctcttggctgtagtttgagcttgtatatgtgagaaatttacaagaaaaaaacgagatttcaaaaagaattcaaatcaacaatttttctgcacaaaacagggaaagagaatgaactagaacaaagcggatttttttcattaatagccgttacatgggaatacatcaaataggaagcttacacacacatagaccagccacacaactaaacacaacattacaaagtgaacaacggaagcattgaagactactagtgatacatgcaaacacaacaaagacactgagcataggagtagatctccnnctaacaaagaaaaagaagaaacacactactttgcgtctacagacacttatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="41936" stop="42953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42234" g_stop="42653" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E353244" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42234" e_stop="42653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGCTATGCTTATGCTATTATAAGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATATGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAAAATTCAAATCAACAAATTTTTCTACACAAAATAGGGAAAGAGAATGAACTAGAACAAAGCGAATGTTTTTCATTAATAGTCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAATCACAACATTACGAAGTGAACAACAGAAGCATTGAAGACTACTAGTGAAACTTGCAAACAGAACAAAGACACTTAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTATAGACACTTATTTAA</genome_strand>
        <mrna_strand>CTTTCTGCTATGCTTATGCTATTATAGGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATGTGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAGAATTCAAATCAAC-AATTTTTCTGCACAAAACAGGGAAAGAGAATGAACTAGAACAAAGCGGATTTTTTTCATTAATAGCCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAAACACAACATTACAAAGTGAACAACGGAAGCATTGAAGACTACTAGTGATACATGCAAACACAACAAAGACACTGAGCATAGGAGTAGATCTCCNNCTAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTACAGACACTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244044" ref_strand="+" ref_description="SGN-E244044 [cLEE-1-F23]">
      <seq>aaaacagggaaagagaatgaactagaacaaagcggatttttttcattaatagccgttacatgggaatacatcaaataggaagcttacacacacatataccagccacacaactaaacacaacattacaaagtgaacaacggaagcattgaagactactagtgatacatgcagacacaacaaagacactgagcataggagtagatctccactaaacaaagaaaacgaagaaacacactactttgcgtctacagacacttatttaaaccttcttaaactccaaagagtcgactgactctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="42091" stop="42988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42391" g_stop="42688" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E244044" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42391" e_stop="42688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGGGAAAGAGAATGAACTAGAACAAAGCGAATGTTTTTCATTAATAGTCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAATCACAACATTACGAAGTGAACAACAGAAGCATTGAAGACTACTAGTGAAACTTGCAAACAGAACAAAGACACTTAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTATAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCAACTGACTCTTA</genome_strand>
        <mrna_strand>AAAACAGGGAAAGAGAATGAACTAGAACAAAGCGGATTTTTTTCATTAATAGCCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATATACCAGCCACACAACTAAACACAACATTACAAAGTGAACAACGGAAGCATTGAAGACTACTAGTGATACATGCAGACACAACAAAGACACTGAGCATAGGAGTAGATCTCCACTAAACAAAGAAAACGAAGAAACACACTACTTTGCGTCTACAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCGACTGACTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376739" ref_strand="+" ref_description="SGN-E376739 [TUS-19-A8]">
      <seq>taaggagctgttgaatgcgttgttccaccagctccggaaaaacagcaggcacatgctctaaaaaagcatgaagcgtttgctgacgttcgcgcctttcattttcaacatttagaattctttgattaatttgagaaagtctttcagtggtagctggatccatatctccctttgctttgccaaatagagaaagaagcttctatttataggcgttggaggcccttaaccctttcttattattagtaagataggttgtcttggttccgtaacatggttcaaacctggcttttcatgaatatggaaccccatccactagatttaagtgcgctgaataattgtcctttcctcgtacgcatttgagtactcaaggccccctttcttttggcgggtatcgccacgtggcttaatcccggatcactccttaaggaataggacacaataatatagcgcacatcagagaagagagtaccccctttattataagacaggccccccgcgtcctttcttaagagatggagcaatcgtcactcgacagctcanaactgaccagtacaaaaccatgtgatctgtcctcgtttacgtaccccactggcactagcctaacgccctgcctactcgtctttaactggcttatttgtacccagctacatgatggaagtcccctcggccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="42487" stop="43754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42787" g_stop="43454" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E376739" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42787" e_stop="43454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGC-TTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCTTTCTTATTATCAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGAAACCCCATCCACTAGATTTAAGTGTGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGACCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCATCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCAATACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCATCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</genome_strand>
        <mrna_strand>TAAGGAGCTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAGCAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCGCGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTGGATCCATATCTCCCTTTGCTTTGCCAAATAGAGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACCCTTTCTTATTATTAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGGAACCCCATCCACTAGATTTAAGTGCGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGGCCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCGTCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCANAACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCGTCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231444" ref_strand="+" ref_description="SGN-E231444 [cLED-4-M11]">
      <seq>taaggagctgttgaatgcgttgttccaccagctccggaaaaacagcaggcacatgctctaaaaaagcatgaagcgtttgctgacgttcgcgcctttcattttcaacatttagaattctttgattaatttgagaaagtctttcagtggtagctggatccatatcttcctttgctttgccaaatagagaaagaagcttctatttataggcgttggaggcccttaaccctttcttattattagtaagataggttgtcttggttccgtaacatggttcaaacctggcttttcatgaatatggaaccccatccactagatttaagtgcgctgaataattgtcctttcctcgtacgcatttgagtactcaaggccccctttcttttggcgggtatcgccacgtggcttaatcccggatcactccttaaggaataggacacaataatatagcgctcattagagaagagagtaccccctttattataagacaggccccccgcgtcctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="42487" stop="43588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42787" g_stop="43288" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E231444" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42787" e_stop="43288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGC-TTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCTTTCTTATTATCAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGAAACCCCATCCACTAGATTTAAGTGTGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGACCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCATCCTTTCT</genome_strand>
        <mrna_strand>TAAGGAGCTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAGCAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCGCGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTGGATCCATATCTTCCTTTGCTTTGCCAAATAGAGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACCCTTTCTTATTATTAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGGAACCCCATCCACTAGATTTAAGTGCGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGGCCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCTCATTAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCGTCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239845" ref_strand="+" ref_description="SGN-E239845 [cLED-29-N15]">
      <seq>taaggagctgttgaatgcgttgttccaccagctccggaaaaacagcaggcacatgctctaaaaaagcatgaagcgtttgctgacgttcgcgcctttcattttcaacatttagaattctttgattaatttgagaaagtctttcaggggtagctggatccatatctccctttgctttgccaaatagagaaagaagcttctatttataggcgttggaggcccttaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="42487" stop="43312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42787" g_stop="43012" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E239845" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42787" e_stop="43012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGC-TTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCT</genome_strand>
        <mrna_strand>TAAGGAGCTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAGCAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCGCGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGGGGTAGCTGGATCCATATCTCCCTTTGCTTTGCCAAATAGAGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241783" ref_strand="+" ref_description="SGN-E241783 [cLEE-10-I23]">
      <seq>tataaaatacctaataactcatatcatatgatacttatcatataaaattaatacctaacaataaatattatcatatacttgatctaaggttcataatcagtcttagtggtagcagcttccaagcatgatatgttaactatatatccctaatgcccttatcacttgttcttctgcttttatctttcttagccaggaagcttttttacccattccttctcatcctttgtctgactttctgtaggtaactctatctaattcactctctttcttctcgctcgtatcgtatactttttcttgttcaaagcgtatccgcactgatgaagtggaatataaatacctaatatcatatgagtcttactatataaagaattaacacctaacaagatatatttatcatatactataaaatacctaataacacattatgattacctgcaagaaaagggaatgtataatagtaataagcggcctgcctgctaaccaaactgcgtaaccaaagcgactccttgttggtggttgataggtgtggtccgattcacctatgtcagttcgaacttggcgggtcgttcgttcgtgtggagaatctctctcgttactcaggatttctctcagttgatccgatgcgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="43792" stop="45022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44092" g_stop="44722" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E241783" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44092" e_stop="44722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAATACCTAATAACTCATATCATATGATACTTACCATATAAAATTACTACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGACTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATTCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAGTTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTAATGAAATGGAATAGAAATACCTAATATCGTATGAGTCTTACTATATAAAGAATTAACACCTAACAATATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAAGAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTGTTGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGTGTCATA</genome_strand>
        <mrna_strand>TATAAAATACCTAATAACTCATATCATATGATACTTATCATATAAAATTAATACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGTCTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATGCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAATTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTGATGAAGTGGAATATAAATACCTAATATCATATGAGTCTTACTATATAAAGAATTAACACCTAACAAGATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAATAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTG-TGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGCGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48830" stop="50142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49130" g_stop="49842" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49130" e_stop="49842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48830" stop="50025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49130" g_stop="49725" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49130" e_stop="49725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48830" stop="49955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49130" g_stop="49655" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49130" e_stop="49655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48901" stop="50179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49201" g_stop="49880" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49201" e_stop="49880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48901" stop="49859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49201" g_stop="49559" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49201" e_stop="49559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="49422" stop="50780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49719" g_stop="50480" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49719" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="49422" stop="50679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49719" g_stop="50379" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49719" e_stop="50379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="49822" stop="50752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50122" g_stop="50452" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50122" e_stop="50452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="50655" stop="51894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50959" g_stop="51594" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="664" r_length="637" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50959" e_stop="51594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAATAACCGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTACAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTTTATAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAATACTGTAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAGTGAGGCATCCATGCGGGGAGACACAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCGCTAAGGTAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGTAATT-CCTCATTCTGTACTTGTTCA-TTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>TTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="51953" stop="50799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51651" g_stop="51099" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51651" e_stop="51099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGGCCCATCTGGTACTAGGGCGGTGACTCTTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGA-AATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGTCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTACAGTATTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTATAAAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550684" ref_strand="+" ref_description="SGN-E550684 [TUS-50-B11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="80719" stop="81912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81019" g_stop="81612" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E550684" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81019" e_stop="81612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTATACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAATGCTTTTGAGAGGTTCGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCT-CTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTAAGGAATGTCTCAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTG-C--C--TACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688349" ref_strand="+" ref_description="SGN-E688349 [t3_tus_50_b11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="80719" stop="81912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81019" g_stop="81612" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E688349" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81019" e_stop="81612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTATACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAATGCTTTTGAGAGGTTCGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCT-CTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTAAGGAATGTCTCAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTG-C--C--TACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358519" ref_strand="+" ref_description="SGN-E358519 [cLHT-22-G5]">
      <seq>aaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggcttcgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagtagaggcttacttgaaggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="80936" stop="81964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81236" g_stop="81664" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E358519" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81236" e_stop="81664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</genome_strand>
        <mrna_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAAGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372630" ref_strand="+" ref_description="SGN-E372630 [TUS-31-A7](-)">
      <seq>tttgtgtccaagattggcttagacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatttatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatttcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="81678" stop="82882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81978" g_stop="82061" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82154" g_stop="82211" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82303" g_stop="82562" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="374" r_length="232" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E372630" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81978" e_stop="82061"/>
          <exon e_start="82154" e_stop="82211"/>
          <exon e_start="82303" e_stop="82562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTCTGTTATATCTTGTATGACATGCTTCTTTTTATTAATTATAGAGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTGGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</genome_strand>
        <mrna_strand>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATTTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATTTCATGGAAGAAAGTCAAGAAACTCATTA---TTG-TTG-T-TTGTT---A-TTG--TTGAAAGTAATCTCAT-------G---A-AAG--T--CA-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372631" ref_strand="+" ref_description="SGN-E372631 [TUS-31-A7]">
      <seq>ttgtgtccaagattggcttagacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatctatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatctcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="81679" stop="82882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81979" g_stop="82061" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82154" g_stop="82211" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="141" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82303" g_stop="82562" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="373" r_length="232" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="444"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E372631" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81979" e_stop="82061"/>
          <exon e_start="82154" e_stop="82211"/>
          <exon e_start="82303" e_stop="82562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTCTGTTATATCTTGTATGACATGCTTCTTTTTATTAATTATAGAGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTGGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</genome_strand>
        <mrna_strand>TTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTA---TTG-TTG-T-TTGTT---A-TTG--TTGAAAGTAATCTCAT-------G---A-AAG--T--CA-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289053" ref_strand="+" ref_description="SGN-E289053 [cLES-18-E17]">
      <seq>agattggcttacacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatctatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatctcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattgcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="81688" stop="82882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81988" g_stop="82061" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82154" g_stop="82211" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="132" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82303" g_stop="82562" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="364" r_length="232" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="435"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E289053" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81988" e_stop="82061"/>
          <exon e_start="82154" e_stop="82211"/>
          <exon e_start="82303" e_stop="82562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTCTGTTATATCTTGTATGACATGCTTCTTTTTATTAATTATAGAGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTGGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</genome_strand>
        <mrna_strand>AGATTGGCTTACACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTA---TTG-TTG-T-TTGTT---A-TTG--TTGAAAGTAATCTCAT-------G---A-AAG--T--CA-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735778" ref_strand="+" ref_description="SGN-E735778 [LC02DH10]">
      <seq>cgattagaatatcagagaaagaaggtgaagtagaggagtgatgttcagttgaggaaaatgcactgtttcttcacattggcttaacccctatcaagattgattaagctgtgttttaaggtaccctctgtttctttgaggagaagaaatggaggcaggtggtggaatggtagctggatctcacaagcgtaatgagttggttaggattcgacatgattctgatagtgggccgaaacccttgaagcctctcaatagccaaatatgccaaatttgtggtgatactgttggttcgactgctagtggtgatgtattcattgcttgtaatgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86126" stop="88535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86426" g_stop="86651" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88235" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="367" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E735778" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86426" e_stop="86651"/>
          <exon e_start="88095" e_stop="88235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</genome_strand>
        <mrna_strand>CGATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739279" ref_strand="+" ref_description="SGN-E739279 [LC16DC03]">
      <seq>cttataatatcagagaaagaaggtgaagtagaggagtgatgttcagttgaggaaaatgcactgtttcttcacattggcttaacccctatcaagattgattaagctgtgttttaaggtaccctctgtttctttgaggagaagaaatggaggcaggtggtggaatggtagctggatctcacaagcgtaatgagttggttaggattcgacatgattctgatagtgggccgaaacccttgaagcctctcaatagccaaatatgccaaatttgtggtgatactgttggttcgactgctagtggtgatgtattcattgcttgtaatgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86129" stop="88535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86428" g_stop="86651" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88235" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="365" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E739279" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86428" e_stop="86651"/>
          <exon e_start="88095" e_stop="88235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</genome_strand>
        <mrna_strand>CTTATAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737596" ref_strand="+" ref_description="SGN-E737596 [LC10BH12]">
      <seq>gtgaagtagaggagtgatgttcagttgaggaaaatgcactgtttcttcacattggcttaacccctatcaagattgattaagctgtgttttaaggtaccctctgtttctttgaggagaagaaatggaggcaggtggtggaatggtagctggatctcacaagcgtaatgagttggttaggattcgacatgattctgatagtgggccgaaacccttgaagcctctcaatagccaaatatgccaaatttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86150" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86450" g_stop="86651" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88142" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E737596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86450" e_stop="86651"/>
          <exon e_start="88095" e_stop="88142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGT</genome_strand>
        <mrna_strand>GTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580794" ref_strand="+" ref_description="SGN-E580794 [6037]">
      <seq>agaggagtgatgtccagttgaggaaatgcactgtttcttcacattggcataaccccgtaaaagtgaatcagattgattagctgtgttttaggtaccctctgtttctttgaggagaaaaaatggaggcaggtgctggaatggtagctggatctcacaaagcgcaatgagttggttaggattcgacatgattctgataggtgggccgaaacccttgaagcctctcaacagtcaaaatatgccaaatttgtggtgatactgttgggttaactgctactggtgatgtattcattgcttgtaatgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgtaaagatggaaatcaatcatgtcctcaatgcaagaccagatacaagaggttcaaggggagtccacggagtggatggagatgatgacgaggaagatgttgatgatatcgacaatgagttcaattatgctcaaggtaaacagcaaggccagacagcaatggcaggatgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgatccctcttcttacaaatgggcaggcagtatctggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86157" stop="88883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86457" g_stop="86651" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88290" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="399" r_length="197" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88400" g_stop="88581" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="583" r_length="184" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E580794" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86457" e_stop="86651"/>
          <exon e_start="88095" e_stop="88290"/>
          <exon e_start="88400" e_stop="88581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCC-TATCA-AG-AT-TGATT-A--AGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCAC-AAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATA-GTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAG-CCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGGGTGAGTGAGTTCAATATTTTTTTCTGTTACTTTTTTGGTTCCTTGCGCTTTCGTTTTTGCTTCTAAACTGAACTTTATAAACTAAGTCATTGCTTGGTCAATGTATTAGGGAGTCCAC-GAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGG-AAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA</genome_strand>
        <mrna_strand>AGAGGAGTGATGTCCAGTTGAGG-AAATGCACTGTTTCTTCACATTGGCATAACCCCGTAAAAGTGAATCAGATTGATTAGCTGTGTTTT-AGGTACCCTCTGTTTCTTTGAGGAGAAAAAATGGAGGCAGGTGCTGGAATGGTAGCTGGATCTCACAAAGCGCAATGAGTTGGTTAGGATTCGACATGATTCTGATAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAACAGTCAAAATATGCCAAATTTGTGGTGATACTGTTGGGTTAACTGCTACTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG.............................................................................................................GGAGTCCACGGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGTAAACAGCAAGGCCAGACAGCAATGGCAGGATGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATCCCTCTTCTTACAAATGGGCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569723" ref_strand="+" ref_description="SGN-E569723 [14199]">
      <seq>aatcgcacgagggattaagctgtgttttaaggtaccctctggtttctttgaggagaagaaatggaggcaggtgctggaatggtagctgggatctcacaagcgcaatgagttggttaggattcgacatgattctgatagtgggccgaaacccttgaagcctctcaacagtcaaatatgccaaatttgtggtgatactgttgggttaactgctactggtgatgtattcattgcttgtaatgagtgtgcctttcctgtttgccgggcttggttatgagtacgagcgtaaagatggaaatcaatcatggtcctcaatgcaagaccagatacaagaggttcaaggggagtccacgagtggatggagatgatgacgaggaagatgttgatgatatcgacaatgagttcaattatgctcaaggaaacagcaaggccagacagcaatggcagggtgatgatgctggtctctcttcatcctctatgacacgaatctcagcaaccgatccctcttcttacaaaatggccagccagtatctggtgattttcctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86217" stop="89612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86512" g_stop="86651" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88290" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="340" r_length="198" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88400" g_stop="88581" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="524" r_length="184" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89293" g_stop="89312" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="544" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E569723" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86512" e_stop="86651"/>
          <exon e_start="88095" e_stop="88290"/>
          <exon e_start="88400" e_stop="88581"/>
          <exon e_start="89293" e_stop="89312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCT-GTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCT-GGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTT-GTTATGAGTACGAGCGTAAAGATGGAAATCAATCAT-GTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGGGTGAGTGAGTTCAATATTTTTTTCTGTTACTTTTTTGGTTCCTTGCGCTTTCGTTTTTGCTTCTAAACTGAACTTTATAAACTAAGTCATTGCTTGGTCAATGTATTAGGGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTA-GACACGAATCTCAGCAACCGATTCCTCTTCTTAC-AGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAG</genome_strand>
        <mrna_strand>AATCGCACGAGGGATTAAGCTGTGTTTTAAGGTACCCTCTGGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGCTGGAATGGTAGCTGGGATCTCACAAGCGCAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAACAGTCAAATATGCCAAATTTGTGGTGATACTGTTGGGTTAACTGCTACTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG.............................................................................................................GGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTATGACACGAATCTCAGCAACCGATCCCTCTTCTTACAAAATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGGTGATTTTCCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739896" ref_strand="+" ref_description="SGN-E739896 [LC19BB01]">
      <seq>tgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgtaaagatggaaatcaatcatgtcctcaatgcaagaccagatacaagaggttcaaggggagtccacgagtggatggagatgatgacgaggaagatgttgatgatatcgacaatgagttcaattatgctcaaggaaacagcaaggccagacagcaatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactgaaacaggagaaaaatctggtgcattcgacaaacagatattctgaagggaaaggcggggacattgaagggacagggtcgaatggagaagagctacaaatggctgacgatgctcgccagcctatgagccgtgtggtgcctattccttcatcccaccttaccccatatcgggttgttatcattttgcggttgatcatcttgggatttttcatgcaataccgtctaactcatccagtgaatgatgcatatcctccgtggctagtatcagttatttgtgaggtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="87890" stop="90554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88190" g_stop="88290" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88400" g_stop="88581" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="283" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="401" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89508" g_stop="89697" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="591" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89698" i_stop="90069" i_length="372">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90070" g_stop="90254" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="776" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E739896" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88190" e_stop="88290"/>
          <exon e_start="88400" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89697"/>
          <exon e_start="90070" e_stop="90254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGGGTGAGTGAGTTCAATATTTTTTTCTGTTACTTTTTTGGTTCCTTGCGCTTTCGTTTTTGCTTCTAAACTGAACTTTATAAACTAAGTCATTGCTTGGTCAATGTATTAGGGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAATGTAAGCATCTTATTGAATAAATGAAAAATATTTAGGGAACATACGATATATTATAGATGACTGGATCAAACTTTTGCTTCTTCCTTTAATAACCCCAGCACTGATATCCATCTCTCTCTCACTGCAAAAATCTTGTAATACTTGGTTTGAGAAGTGAAAAGTTTTTTAAAAAATCCTTTTTAATGTCTTGACACTGTTATGATGTCCACTGCACCATCCCTGCTTAAATTTGTAGTACTTAGTTTGGGAAATGAATTTCCTTTCTATTGTCCTGGAACTATTTCTCTGTTTATTAGTCAATTTTCTTGGTTTTATAATACTGCAAGAAAATTTAATTTAAAACTATGATACTTATTGGTTTTCTCTTGACAGGGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGT</genome_strand>
        <mrna_strand>TGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG.............................................................................................................GGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAAT....................................................................................................................................................................................................................................................................................................................................................................................GGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCCGTGGCTAGTATCAGTTATTTGTGAGGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740952" ref_strand="+" ref_description="SGN-E740952 [LC23CE03]">
      <seq>gctatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="88194" stop="89899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88494" g_stop="88581" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="206" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89508" g_stop="89599" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E740952" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88494" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</genome_strand>
        <mrna_strand>GCTATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736518" ref_strand="+" ref_description="SGN-E736518 [LC06AC11]">
      <seq>gcaatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="88194" stop="89899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88494" g_stop="88581" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="206" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89508" g_stop="89599" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E736518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88494" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</genome_strand>
        <mrna_strand>GCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740258" ref_strand="+" ref_description="SGN-E740258 [LC20CH07]">
      <seq>gcaatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="88194" stop="89899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88494" g_stop="88581" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="206" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89508" g_stop="89599" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E740258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88494" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</genome_strand>
        <mrna_strand>GCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737491" ref_strand="+" ref_description="SGN-E737491 [LC10AC05]">
      <seq>ggctgcaggaattcggcacgagggcaatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="88185" stop="89899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88495" g_stop="88581" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="111" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="229" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89508" g_stop="89599" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="321" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E737491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88495" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</genome_strand>
        <mrna_strand>CAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578822" ref_strand="+" ref_description="SGN-E578822 [85943]">
      <seq>gtgcattcgacaaacagatatgccgaagggaaaggcggagacattgaagggacagggtcgaatggagaagagctacaaatggctgacgatgctcgccagcctatgagccgtgtggtgcctattccttcatcccatcttaccccatatcgggttgttatcattttgcggttgatcatcttgggctttttcatgcaataccgtctaactcatccagtgaatgatgcatatcctctgtggctagtatcagttatttgtgaggtttggtttgccttgtcctggcttctcgatcagtttccaaaatggtcaccagtcaatcgtgagacattccttgacaggctagctttgagacatgatagagaaggggagccttcgcagcttgcacctgttgacgtctttgtcagtacagtggatcctttgaaagaacctcctctcattactgcaaacacagtgttgtccatccttgctgttgattatcctgtggacaaggtctcatgctatgtgtcagatgatggttcagcaatgctaacgtttgaagccctttctgagaccgcagagtttgcaaggagatgggttcccttctgcaagaaattcagcattgagcctcgggcccctgaatttcattttgctcaaaagatagattatttgaaggacaaggttcagccttcttttgtgaaagagcgcagggcaatgaagagggaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="89318" stop="91124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89618" g_stop="89697" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89698" i_stop="90069" i_length="372">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90070" g_stop="90336" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="347" r_length="267" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90337" i_stop="90478" i_length="142">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.442" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90479" g_stop="90824" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="693" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E578822" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89618" e_stop="89697"/>
          <exon e_start="90070" e_stop="90336"/>
          <exon e_start="90479" e_stop="90824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAATGTAAGCATCTTATTGAATAAATGAAAAATATTTAGGGAACATACGATATATTATAGATGACTGGATCAAACTTTTGCTTCTTCCTTTAATAACCCCAGCACTGATATCCATCTCTCTCTCACTGCAAAAATCTTGTAATACTTGGTTTGAGAAGTGAAAAGTTTTTTAAAAAATCCTTTTTAATGTCTTGACACTGTTATGATGTCCACTGCACCATCCCTGCTTAAATTTGTAGTACTTAGTTTGGGAAATGAATTTCCTTTCTATTGTCCTGGAACTATTTCTCTGTTTATTAGTCAATTTTCTTGGTTTTATAATACTGCAAGAAAATTTAATTTAAAACTATGATACTTATTGGTTTTCTCTTGACAGGGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGTTTGCCTTGTCCTGGCTCCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAGGTTAGTTGCTATGCTACTCTAGGGAGGAATTATTTGAGTAGTGGAAGGTTTCAAATATTTCACTTCCATTTAGGATAAATACTATGTTTCAAATTCCGGGGTCAAGTTTTCAGTCTTGAAAGTCTTTTCCTCACTTTCTCAGACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACATCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACATTTGAAGCCCTTTCTGAGACTGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG</genome_strand>
        <mrna_strand>GTGCATTCGACAAACAGATATGCCGAAGGGAAAGGCGGAGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAAT....................................................................................................................................................................................................................................................................................................................................................................................GGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCATCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGCTTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGTTTGCCTTGTCCTGGCTTCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAG..............................................................................................................................................ACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACGTCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACGTTTGAAGCCCTTTCTGAGACCGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTCATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423797" ref_strand="+" ref_description="SGN-E423797 [STM-42-H17]">
      <seq>cttcatcccatcttaccccatatcgggttgttatcattttgcggttgatcatcttgggctttttcatgcaataccgtctaactcatccagtgaatgatgcatatcctctgtggctagtatcagttatttgtgaggtttggtttgccttgtcctggcttctcgatcagtttccaaaatggtcaccagtcaatcgtgagacattccttgacaggctagctttgagacatgatagagaaggggagccttcgcagcttgcacctgttgacgtctttgtcagtacagtggatcctttgaaagaacctcctctcattactgcaaacacagtgttgtccatccttgctgttgattatcctgtggacaaggtctcatgctatgtgtcagatgatggttcagcaatgctaacgtttgaagccctttctgagaccgcagagtttgcaaggagatgggttcccttctgcaagaaattcagcattgagcctcgggcccctgaattttattttgctcaaaagatagattatttgaaggacaaggttcagccttcttttgtgaaagagcgcagggcaatgaagagggaatatgaagaatttaaaatacgtatcaatgctcttgntgcaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="89814" stop="91581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90114" g_stop="90336" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90337" i_stop="90478" i_length="142">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.442" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90479" g_stop="90824" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="569" r_length="346" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90825" i_stop="91231" i_length="407">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91232" g_stop="91282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="620" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E423797" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90114" e_stop="90336"/>
          <exon e_start="90479" e_stop="90824"/>
          <exon e_start="91232" e_stop="91282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGTTTGCCTTGTCCTGGCTCCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAGGTTAGTTGCTATGCTACTCTAGGGAGGAATTATTTGAGTAGTGGAAGGTTTCAAATATTTCACTTCCATTTAGGATAAATACTATGTTTCAAATTCCGGGGTCAAGTTTTCAGTCTTGAAAGTCTTTTCCTCACTTTCTCAGACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACATCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACATTTGAAGCCCTTTCTGAGACTGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAGGTACAAATGAAACTTTAATAAGCTGAATTTAATGGGAATTTATTGGTATGTAGGTGACTAGGCATCAGGTTTTAGATATAAAACTTCTGTTTGATGGTAGTTGAGTTTTATTCACCAAATGCTCCATTAGTTAAACTCTATTATTTTTGATAGGATTGTGGAAGGCTGAATGTCTAAGATCCCTTGATAAATCAATGTATACAGGATAAGTAGGTCTGGAGATAACTTTAGCCTGAAAGTTTGTTGGTTACCTGCGGAGTGATTTACATAAATCATTTGATAAGTTCTACTAGTTGGGAAAGTTCAGGCCTCTCTGTTGCTAGGATTTATGCTGATAATACTGCCAGAATCCTTTTTCTCTCTAATAAGCAAACAATTACAATAATCTGATAATTTTGGCATTGCAGAGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCG</genome_strand>
        <mrna_strand>CTTCATCCCATCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGCTTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGTTTGCCTTGTCCTGGCTTCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAG..............................................................................................................................................ACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACGTCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACGTTTGAAGCCCTTTCTGAGACCGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAATATGAAGAATTTAAAATACGTATCAATGCTCTTGNTGCAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624299" ref_strand="+" ref_description="SGN-E624299 [GI|33186654]">
      <seq>ggtttggtttgccttgtcctggcttctcgatcagtttccaaaatggtcaccagtcaatcgtgagacattccttgacaggctagctttgagacatgatagagaaggggagccttcgcagcttgcacctgttgacgtctttgtcagtacagtggatcctttgaaagaacctcctctcattactgcaaacacagtgttgtccatccttgctgttgattatcctgtggacaaggtctcatgctatgtgtcagatgatggttcagcaatgctaacgtttgaagccctttcagagaccgcagagtttgcaaggagatgggttcccttctgcaagaaattcagcattgagcctcgggcccctgaattttattttgctcaaaagatagattatttgaaggacaaggttcagccttcttttgtgaaagagcgcagggcaatgaagagggaatatgaagaatttaaaatacgtatcaatgctcttgttgcaaaagcacaaaaaatgcctgaagaaggttggacaatgcaagatggaacagcttggcctggaaataaccctagggatcatccaggaatgatccaggtctttttggggcatagcgggggccttgatactgatngaaatgaacttcctcgtctggtttatgtttctcgtgagaagcgaccaggtttccaacaccacaagaaagctggagctatgaatgctttgattcgtgtttctgcagttcttaccaatggagcatatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagctatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggtcttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaagcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttctgggtcattggtggtacatcagctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccacctttacagtcacgtcaaaggcaaacgatgaggatggagattttgttgagctttatgtgttcaaatggacgactctccttattcctcccacagcaatccttatcatgaatctggtaggaattgtggcgggtgtttcatatgccataaacagtggataccaatcatggggtcctctatttggnaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggcagttctccttgcatccatattctcattgctttgggtgcgtatcgatcctttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgctagtgagaagtttatttattttttaaggtaagataagatgtttgttgatccacatatggtcccatgttgtaaataagaaaactaaggcggtgtggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaagaagacatcaaactcacatggatttttgcctttttgttgtataccgtttacatgtctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="89947" stop="94963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90247" g_stop="90336" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90337" i_stop="90478" i_length="142">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.442" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90479" g_stop="90824" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="436" r_length="346" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90825" i_stop="91231" i_length="407">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91232" g_stop="91369" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="574" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91370" i_stop="91457" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91458" g_stop="91583" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="700" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91796" g_stop="92008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="913" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="1181" r_length="268" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1182" r_stop="1378" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1379" r_stop="1729" r_length="351" r_score="0.977"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93890" g_stop="94601" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1730" r_stop="2454" r_length="725" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E624299" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>2441</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90247" e_stop="90336"/>
          <exon e_start="90479" e_stop="90824"/>
          <exon e_start="91232" e_stop="91369"/>
          <exon e_start="91458" e_stop="91583"/>
          <exon e_start="91796" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGTTTGCCTTGTCCTGGCTCCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAGGTTAGTTGCTATGCTACTCTAGGGAGGAATTATTTGAGTAGTGGAAGGTTTCAAATATTTCACTTCCATTTAGGATAAATACTATGTTTCAAATTCCGGGGTCAAGTTTTCAGTCTTGAAAGTCTTTTCCTCACTTTCTCAGACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACATCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACATTTGAAGCCCTTTCTGAGACTGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAGGTACAAATGAAACTTTAATAAGCTGAATTTAATGGGAATTTATTGGTATGTAGGTGACTAGGCATCAGGTTTTAGATATAAAACTTCTGTTTGATGGTAGTTGAGTTTTATTCACCAAATGCTCCATTAGTTAAACTCTATTATTTTTGATAGGATTGTGGAAGGCTGAATGTCTAAGATCCCTTGATAAATCAATGTATACAGGATAAGTAGGTCTGGAGATAACTTTAGCCTGAAAGTTTGTTGGTTACCTGCGGAGTGATTTACATAAATCATTTGATAAGTTCTACTAGTTGGGAAAGTTCAGGCCTCTCTGTTGCTAGGATTTATGCTGATAATACTGCCAGAATCCTTTTTCTCTCTAATAAGCAAACAATTACAATAATCTGATAATTTTGGCATTGCAGAGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCGCAAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAGGTATTCTTTATTTATCTTATAATTATGTGAAAGTTGATTCACTGTACATCTTCTCCTCTTTTAGTTAATTACTTCGGATTGGATGTAGGTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTAGGCCACTGATAATTACAATATGAGATCTTCCAATTTTATTGAGCATGCCATCAAGTTGAATAGCTCTAATTTATATACACACATTATGGTTGCGATGATGGAGAATGTCTCATAGCATACTTAAATCATACAGCTCTCCTTATGCCATCTGATATTATTATATTGTGTGATGTTCCATTTATTTAAGCTGTACCTTCAATTTTCTGCAGATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTA--TTTTAA-G---G-TAAGATGTTTGCTTAT-C-C--AT--TCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGA</genome_strand>
        <mrna_strand>GGTTTGGTTTGCCTTGTCCTGGCTTCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAG..............................................................................................................................................ACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACGTCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACGTTTGAAGCCCTTTCAGAGACCGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAATATGAAGAATTTAAAATACGTATCAATGCTCTTGTTGCAAAAGCACAAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAG........................................................................................GTCTTTTTGGGGCATAGCGGGGGCCTTGATACTGATNGAAATGAACTTCCTCGTCTGGTTTATGTTTCTCGTGAGAAGCGACCAGGTTTCCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG....................................................................................................................................................................................................................ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCTATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGTCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAAGCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCAGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCACCTTTACAGTCACGTCAAAGGCAAACGATGAGGATGGAGATTTTGTTGAGCTTTATGTGTTCAAATGGACGACTCTCCTTATTCCTCCCACAGCAATCCTTATCATGAATCTGGTAGGAATTGTGGCGGGTGTTTCATATGCCATAAACAGTGGATACCAATCATGGGGTCCTCTATTTGGNAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCAGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGATCCTTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGCTAGTGAGAAGTTTATTTATTTTTTAAGGTAAGATAAGATGTTTGTTGATCCACATATGGTCCCATGTTGTAAATAAGAAAACTAAGGCGGTGTGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737116" ref_strand="+" ref_description="SGN-E737116 [LC08CB10]">
      <seq>ggttggacaatgcaagatggaacagcttggcctggaaataaccctagggatcatccaggaatgatccaggtctttttggggcacagcgggggccttgatactgatggaaatgaacttcctcgtctggtgtatgtttctcgtgagaagcgaccaggttttcaacaccacaagaaagctggagctatgaatgctttgattcgtgtttctgcagttcttaccaatggagcatatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagcaatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggccttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttacgggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91001" stop="93209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91301" g_stop="91369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91370" i_stop="91457" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91458" g_stop="91583" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="195" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91796" g_stop="92008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="408" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="676" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92775" g_stop="92909" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="811" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E737116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91301" e_stop="91369"/>
          <exon e_start="91458" e_stop="91583"/>
          <exon e_start="91796" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAGGTATTCTTTATTTATCTTATAATTATGTGAAAGTTGATTCACTGTACATCTTCTCCTCTTTTAGTTAATTACTTCGGATTGGATGTAGGTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTAGGCCACTGATAATTACAATATGAGATCTTCCAATTTTATTGAGCATGCCATCAAGTTGAATAGCTCTAATTTATATACACACATTATGGTTGCGATGATGGAGAATGTCTCATAGCATACTTAAATCATACAGCTCTCCTTATGCCATCTGATATTATTATATTGTGTGATGTTCCATTTATTTAAGCTGTACCTTCAATTTTCTGCAGATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTT</genome_strand>
        <mrna_strand>GGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAG........................................................................................GTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG....................................................................................................................................................................................................................ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701257" ref_strand="+" ref_description="SGN-E701257 [FA15BH05]">
      <seq>aatgaacttcctcgtctggtgtatgtttctcgtgagaagcgaccaggttttcaacaccacaagaaagctggagctatgaatgctttgattcgtgtttctgcagttcttaccaatggagcatatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagcaatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggccttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttacgggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattggggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91197" stop="93469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91497" g_stop="91583" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91796" g_stop="92008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="300" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="568" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="766" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93085" g_stop="93169" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="852" r_length="86" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E701257" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91497" e_stop="91583"/>
          <exon e_start="91796" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTAGGCCACTGATAATTACAATATGAGATCTTCCAATTTTATTGAGCATGCCATCAAGTTGAATAGCTCTAATTTATATACACACATTATGGTTGCGATGATGGAGAATGTCTCATAGCATACTTAAATCATACAGCTCTCCTTATGCCATCTGATATTATTATATTGTGTGATGTTCCATTTATTTAAGCTGTACCTTCAATTTTCTGCAGATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAG-AAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGG-TGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCA</genome_strand>
        <mrna_strand>AATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG....................................................................................................................................................................................................................ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468592" ref_strand="+" ref_description="SGN-E468592 [cSTB-5-E6]">
      <seq>gagaagcgaccaggtttccaacaccacaagaaagctggagctatgaatgctttgattcgtgtttctgcagttcttaccaatggagcatatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagctatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggtcttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaagatatgatgaagagaagtcactgcttatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91230" stop="93107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91530" g_stop="91583" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91796" g_stop="92008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="267" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="535" r_length="268" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92775" g_stop="92807" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="568" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E468592" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91530" e_stop="91583"/>
          <exon e_start="91796" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTAGGCCACTGATAATTACAATATGAGATCTTCCAATTTTATTGAGCATGCCATCAAGTTGAATAGCTCTAATTTATATACACACATTATGGTTGCGATGATGGAGAATGTCTCATAGCATACTTAAATCATACAGCTCTCCTTATGCCATCTGATATTATTATATTGTGTGATGTTCCATTTATTTAAGCTGTACCTTCAATTTTCTGCAGATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCAC</genome_strand>
        <mrna_strand>GAGAAGCGACCAGGTTTCCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG....................................................................................................................................................................................................................ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCTATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGTCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAAGAGAAGTCACTGCTTATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560485" ref_strand="+" ref_description="SGN-E560485 [20146]">
      <seq>catatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttagaagaagctatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggtcttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91527" stop="93247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91827" g_stop="92008" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="451" r_length="268" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92775" g_stop="92947" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="624" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E560485" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91827" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTA-AAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAG</genome_strand>
        <mrna_strand>CATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAGAAGAAGCTATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGTCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300789" ref_strand="+" ref_description="SGN-E300789 [cLEW-8-O19]">
      <seq>aatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagcaatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggccttcatggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttaccggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaaaaaatacattgattagaagagggcggtaaaaagaacagaatgcactgtcccaattctcaatatggaagacattgaagaaggcgtataaggatatgatgaggagaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91538" stop="93093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91838" g_stop="92008" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="439" r_length="268" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92775" g_stop="92793" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="458" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E300789" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91838" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTC</genome_strand>
        <mrna_strand>AATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCATGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACCGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAAAAATACATTGATTAGAAGAGGGCGGTAAAAAGAACAGAATGCACTGTCCCAATTCTCAATATGGAAGACATTGAAGAAGGCGTATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699812" ref_strand="+" ref_description="SGN-E699812 [FA11BB06]">
      <seq>cccctatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggccttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttacgggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtacaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaacaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgccactgaacatattttgactgggtttaagatgcatgcacgacgatggtattccctctattgcatgcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91649" stop="93477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91946" g_stop="92008" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="331" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="528" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93085" g_stop="93177" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="621" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E699812" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91946" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCT</genome_strand>
        <mrna_strand>CCCCTATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAACAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGCCACTGAACATATTTTGACTGGGTTTAAGATGCATGCACGACGATGGTATTCCCTCTATTGCATGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699758" ref_strand="+" ref_description="SGN-E699758 [FA11AE07]">
      <seq>cccttttttgatggcattgacttgcacgatcgatatgctaacccaaacattgtgttctttgatatcaacttgaaagggttggatggccttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttacgggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctaccaggacaagactgaatggggaaaacagattgggtggatatatgggtctgtcactgaagatatctcgactgggtttaacatgcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91652" stop="93444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91946" g_stop="92008" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="331" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="528" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93085" g_stop="93144" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="588" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E699758" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91946" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCA</genome_strand>
        <mrna_strand>CCCTTTTTTGATGGCATTGACTTGCACGATCGATATGCTAACCCAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACCAGGACAAGACTGAATGGGGAAAACAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATCTCGACTGGGTTTAACATGCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559484" ref_strand="+" ref_description="SGN-E559484 [18988]">
      <seq>cacagatcaacttgaaagggttggatggtcttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtatccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91809" stop="93535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92109" g_stop="92381" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="470" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93235" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="620" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E559484" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92109" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGC</genome_strand>
        <mrna_strand>CACAGATCAACTTGAAAGGGTTGGATGGTCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTA-TCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589630" ref_strand="+" ref_description="SGN-E589630 [43208]">
      <seq>aaagggttggatggtcttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaagggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91823" stop="93656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92123" g_stop="92381" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="457" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93356" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="729" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E589630" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92123" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAA-GGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCC</genome_strand>
        <mrna_strand>AAAGGGTTGGATGGTCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471913" ref_strand="+" ref_description="SGN-E471913 [cSTB-26-I18]">
      <seq>ttaacaggcaggctctatacgggtatgatcctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91875" stop="93425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92175" g_stop="92381" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="404" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93125" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="445" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E471913" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92175" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGAC</genome_strand>
        <mrna_strand>TTAACAGGCAGGCTCTATACGGGTATGATCCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449078" ref_strand="+" ref_description="SGN-E449078 [cSTS-5-E8]">
      <seq>cctgtcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccangtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91904" stop="93622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92204" g_stop="92381" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="375" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93322" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="613" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E449078" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92204" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGG</genome_strand>
        <mrna_strand>CCTGTCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCANGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559146" ref_strand="+" ref_description="SGN-E559146 [18597]">
      <seq>tcttaactgaggcagatttggagccaaacatcattgtgaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagacttatattaataccatcgtctatctctcacatctttaactttgcttgcttactgtacgctttcgtgcatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91907" stop="93705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92208" g_stop="92381" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="371" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93405" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="692" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E559146" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92208" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAG-CATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGT</genome_strand>
        <mrna_strand>TCTTAACTGAGGCAGATTTGGAGCCAAACATCATTGTGAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGACTTATATTAATACCATCGTCTAT-CTCTCACATCTTTAACTTTGCTTGCTTACTGTACGCTTTCGTGCATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739825" ref_strand="+" ref_description="SGN-E739825 [LC19AB06]">
      <seq>gaggccacttcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttangtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91935" stop="94418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92228" g_stop="92381" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="350" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="701" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93890" g_stop="94118" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="930" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E739825" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92228" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATG</genome_strand>
        <mrna_strand>GAGGC-CACTTCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTANGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738387" ref_strand="+" ref_description="SGN-E738387 [LC13BG10]">
      <seq>gaggccatatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttangtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91935" stop="94319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92228" g_stop="92381" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="350" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="701" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93890" g_stop="94019" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="831" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E738387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92228" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTG</genome_strand>
        <mrna_strand>GAGGC-CATATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTANGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257643" ref_strand="+" ref_description="SGN-E257643 [cLEG-39-C1]">
      <seq>gtgggtcaaggaagaagggaaggagtggaaacaataaatacattgataagaagagggcagtgaaaaggggggagtccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacacaggagcttggagaagcgatttgctcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattgggactgggtttaagatgcatgcacgaggatggtattccctctaattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91959" stop="93574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92259" g_stop="92381" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="320" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93274" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="511" r_length="191" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E257643" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92259" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCT-ATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTA</genome_strand>
        <mrna_strand>GTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAATAAATACATTGATAAGAAGAGGGCAGTGAAAAGGGGGGAGTCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACACAGGAGCTTGGAGAAGCGATTTGCTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTGGGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTAATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588457" ref_strand="+" ref_description="SGN-E588457 [42011]">
      <seq>aaggagtggaaacaagaaatacattgataagaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtgggtgtgagtatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="91978" stop="94284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92278" g_stop="92381" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="301" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="652" r_length="351" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93890" g_stop="93984" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="748" r_length="96" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E588457" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92278" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="93984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGT-GGTGTGAGTATTGA</genome_strand>
        <mrna_strand>AAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGGTGTGAGTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592366" ref_strand="+" ref_description="SGN-E592366 [46098]">
      <seq>gaagagggctgtaaaaagaacagaatccactatcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcggtttggtcaatcaccagtgtttattgctgccacctttatggaacaaggaggcattcccgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92008" stop="94277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92308" g_stop="92381" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="271" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="622" r_length="351" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93890" g_stop="93977" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="710" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E592366" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92308" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="93977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGA</genome_strand>
        <mrna_strand>GAAGAGGGCTGTAAAAAGAACAGAATCCACTATCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGGTTTGGTCAATCACCAGTGTTTATTGCTGCCACCTTTATGGAACAAGGAGGCATTCCCGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284633" ref_strand="+" ref_description="SGN-E284633 [cLES-3-F22]">
      <seq>atgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92478" stop="93616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92778" g_stop="92971" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93085" g_stop="93316" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="426" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E284633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92778" e_stop="92971"/>
          <exon e_start="93085" e_stop="93316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGC</genome_strand>
        <mrna_strand>ATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698146" ref_strand="+" ref_description="SGN-E698146 [FA05BF05]">
      <seq>gcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatccggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggaattgataccaactttacagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92497" stop="94399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92797" g_stop="92971" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="526" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93890" g_stop="94099" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="738" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E698146" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92797" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACAT-CGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGG-ATTGATACCAACTTTACAGTC</genome_strand>
        <mrna_strand>GCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGAATTGATACCAACTTTACAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364890" ref_strand="+" ref_description="SGN-E364890 [cLPT-4-B18]">
      <seq>ttggagaagctgtttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaagcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttangtggagtggtgtgagtattgaagactggtggagaaatgaacagttctgggtcattggtggtacatccgctcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92516" stop="94338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92816" g_stop="92971" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="507" r_length="351" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93890" g_stop="94038" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="656" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E364890" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92816" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTT</genome_strand>
        <mrna_strand>TTGGAGAAGCTGTTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAAGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTANGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCCGCTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708966" ref_strand="+" ref_description="SGN-E708966 [FA42BB01]">
      <seq>ccgatagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92652" stop="94617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92946" g_stop="92971" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="376" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93890" g_stop="94317" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="804" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E708966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92946" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCT</genome_strand>
        <mrna_strand>CCGATA-GACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560318" ref_strand="+" ref_description="SGN-E560318 [19952]">
      <seq>ggtggatctatggatctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctatattgcatgcctcctcgaccagcatttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtatcgaagactggtggagaaatgaacagttctgggtcattggtggtacatcagctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacgtcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacgactctccttattcctcccacagcaatccttatcatgaatctggtaggaattgtggcgggtgtctcatatgccataaaacagtggataccaatcatggggtcctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92789" stop="94564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93089" g_stop="93435" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94264" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="723" r_length="376" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E560318" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93089" e_stop="93435"/>
          <exon e_start="93890" e_stop="94264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCAT-AAACAGTGGATATCAATCATGGGGTCCTCTA</genome_strand>
        <mrna_strand>GGTGGATCTATGGATCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTATATTGCATGCCTCCTCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATCGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCAGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACGTCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACGACTCTCCTTATTCCTCCCACAGCAATCCTTATCATGAATCTGGTAGGAATTGTGGCGGGTGTCTCATATGCCATAAAACAGTGGATACCAATCATGGGGTCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560702" ref_strand="+" ref_description="SGN-E560702 [20398]">
      <seq>ggatggtattccctatattgcatgcctcctcgagcagcatttaaagggtctgcgttcctatcaatctttctgatcgtttaaaccnagtgctccggtgggccttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtatcgaagactggtggagaaatgaacagttctgggtcattggtggtacatcagctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacgtcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacgactctccttattcctcccacagcaatccttatcatgaatctggtaggaattgtggcgggtgtttcatatgccataaacagtggataccaatcatggggtcctctatttgggaagctgtcctttgccatttgggtcattgtccacttgtaccctttctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92848" stop="94622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93148" g_stop="93435" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94322" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="722" r_length="432" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E560702" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93148" e_stop="93435"/>
          <exon e_start="93890" e_stop="94322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGC--TCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAG</genome_strand>
        <mrna_strand>GGATGGTATTCCCTATATTGCATGCCTCCTCGAGCAGCATTTAAAGGGTCTGCGTTCCTATCAATCTTTCTGATCGTTTAAACCNAGTGCTCCGGTGGGCCTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATCGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCAGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACGTCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACGACTCTCCTTATTCCTCCCACAGCAATCCTTATCATGAATCTGGTAGGAATTGTGGCGGGTGTTTCATATGCCATAAACAGTGGATACCAATCATGGGGTCCTCTATTTGGGAAGCTGTCCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTT-CTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701432" ref_strand="+" ref_description="SGN-E701432 [FA15DH02]">
      <seq>tccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtttatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaaggtggtatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92857" stop="94772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93157" g_stop="93435" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94472" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="862" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E701432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93157" e_stop="93435"/>
          <exon e_start="93890" e_stop="94472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACT</genome_strand>
        <mrna_strand>TCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTTTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAAGGTGGTATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705552" ref_strand="+" ref_description="SGN-E705552 [FA27BH07]">
      <seq>gttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92956" stop="94836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93256" g_stop="93435" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94536" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="827" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E705552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93256" e_stop="93435"/>
          <exon e_start="93890" e_stop="94536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATA</genome_strand>
        <mrna_strand>GTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304479" ref_strand="+" ref_description="SGN-E304479 [cLEX-12-J18]">
      <seq>taggcattgcccaatatggtatggctacagtggcagattgatgcttgtggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatacttatcgtgaatctggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92973" stop="94505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93273" g_stop="93435" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94205" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="479" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E304479" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93273" e_stop="93435"/>
          <exon e_start="93890" e_stop="94205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAG</genome_strand>
        <mrna_strand>TAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTGTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATACTTATCGTGAATCTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459703" ref_strand="+" ref_description="SGN-E459703 [cPRO-28-N13]">
      <seq>cttccgtggcagattgatgcttctggagagattagcctatattaataccatcgtctatcctctcacatctttacctttgcttgcttactgtacgcttcctgccatctgtcttctgaccgggaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtatcgaagactggtggagaaatgaacagttctgggtcattggtggtacatcagctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacgtcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacgactctccttattcctcccacagcaatccttatcatgaatctggtaggaattgtggcgggtgtttcatatgccataaacagtggataccaatcatggggtcctctatttgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="92997" stop="94673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93297" g_stop="93435" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93890" g_stop="94373" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="623" r_length="484" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E459703" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93297" e_stop="93435"/>
          <exon e_start="93890" e_stop="94373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTG</genome_strand>
        <mrna_strand>CTTCCGTGGCAGATTGATGCTTCTGGAGAGATTAGCCTATATTAATACCATCGTCTATCCTCTCACATCTTTACCTTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGGAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATCGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCAGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACGTCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACGACTCTCCTTATTCCTCCCACAGCAATCCTTATCATGAATCTGGTAGGAATTGTGGCGGGTGTTTCATATGCCATAAACAGTGGATACCAATCATGGGGTCCTCTATTTGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352584" ref_strand="+" ref_description="SGN-E352584 [cTOS-9-D20]">
      <seq>gagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtataccttttgccctatctcacatgttcatgcaaaaactgtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93694" stop="94994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93994" g_stop="94702" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E352584" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93994" e_stop="94702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGAT</genome_strand>
        <mrna_strand>GAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351849" ref_strand="+" ref_description="SGN-E351849 [cTOS-8-G4]">
      <seq>gagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaagtcaatgtggtatcaactgttagtgagaagtttatttattttaagtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgccctttttgtgtataccttttgccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93694" stop="94968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93994" g_stop="94668" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E351849" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93994" e_stop="94668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTAT</genome_strand>
        <mrna_strand>GAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAAGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAA-GTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCCTTTTTGTGTATACCTTTTGCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350418" ref_strand="+" ref_description="SGN-E350418 [cTOS-5-L9]">
      <seq>aactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtataccttttgccctatctcacatgttcatgcaaaaactgtgacttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93788" stop="94998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94088" g_stop="94712" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E350418" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94088" e_stop="94712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATT</genome_strand>
        <mrna_strand>AACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353944" ref_strand="+" ref_description="SGN-E353944 [cTOS-10-N22]">
      <seq>ctttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtataccttttgccctatctcacatgttcatgcaaaaactgtgacttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93790" stop="94998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94090" g_stop="94697" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="624"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E353944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94090" e_stop="94697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTT</genome_strand>
        <mrna_strand>CTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613451" ref_strand="+" ref_description="SGN-E613451 [63225]">
      <seq>caaaggcaaacgatgaggatggagatttgctgagctttatgtgttcaaatggacgactctccttattcctcccacagcaatccttatcatgaatctggtaggaattgtggcgggtgtttcatatgccataaacagtggataccaatcatggggtcctctatttgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggcagttctccttgcatccatattctcattgctttgggtgcgtatcgatcctttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93804" stop="94768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94104" g_stop="94468" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E613451" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94104" e_stop="94468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATC</genome_strand>
        <mrna_strand>CAAAGGCAAACGATGAGGATGGAGA-TTTGCTGAGCTTTATGTGTTCAAATGGACGACTCTCCTTATTCCTCCCACAGCAATCCTTATCATGAATCTGGTAGGAATTGTGGCGGGTGTTTCATATGCCATAAACAGTGGATACCAATCATGGGGTCCTCTATTTGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCAGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGATCCTTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713099" ref_strand="+" ref_description="SGN-E713099 [FB06CH05]">
      <seq>gctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgttaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtataccttttgccctatctcacatgttcatgcaaaaactgtgacttatgatgtgaagaattttaaatttaattttgttatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="93838" stop="95035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94138" g_stop="94734" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="608"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E713099" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94138" e_stop="94734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTTGTTATCTT</genome_strand>
        <mrna_strand>GCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTTAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTTGTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351742" ref_strand="+" ref_description="SGN-E351742 [cTOS-8-P11]">
      <seq>ttttttttaagataacaaaattaaatttaaaattcttcacatcataagtcacagtttttgcatgaacatgtgagatagggcaaaaggtatacaacaaaaaggcgtaaatccatgagttttgatgtctttcatgcatcacactccttccgacttacaacattggtacaaaatgactacaggacttaaccgaaccggcatagttttcttatatacaacatgagaatggataagcaaacatcttaccttaaaataaataaacttctcactaacagttgataccacattgacctcttgcagcagtctttgacgcgtctgatgtgaaggggtcgatacgcacccaaagcaatgagaatatggatgcaaggagaacagcccagacaatgacaatggtaggagtacgattctgacgtcccaacaaacctttgaggaaagggtacaagtggacaatgacccaaatggcaaagaacaacttcccgaatagaggaccccatgattgatatccactgtttatggcatacgaaacacctgccacaattcctaccagattcacgataaggattgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="95035" stop="93878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95021" g_stop="95015" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95014" i_stop="94736" i_length="279">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94735" g_stop="94178" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="565" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E351742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95021" e_stop="95015"/>
          <exon e_start="94735" e_stop="94178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATGTATGCTTAATAATCGAACCAAACAAAAAATAACCAAACCAATAAATTTACATTATTTTTTATTTGATTTGTTTTTGACTAATAACCAACCCTAGGTTCAATTATGGAAGGATTTTCCAATTGCCTCTCAAATTCCTTCTTTTACATTTTTTTACCATATTAGTGGACATATTGAATGAATGAAAGCATTTGCATGGGAAAAGTTTGTTAAAGTAAAAACACATTAACAGCTCCATTCTCAAACTCACAAACATATCAGTGATACTTCTGCACCAACGATAAGATAACAAAATTAAATTTAAAATTCTTCACATCATAAGTCACAGTTTTTGCATGAACATGTGAGATAGGGCAAAAGGTATACAACAAAAAGGCGTAAATCCATGAGTTTTGATGTCTTTCATGCATCACACTCCTTCCGACTTACAACATTGGTACAAAATGACTACAGGACTTAACCGAACCGGCATAGTTTTCTTATATACAACATGAGAATGGATAAGCAAACATCTTACCTTAAAATAAATAAACTTCTCACTAACAGTTGATACCACATTGACCTCTTGCAGCAGTCTTTGACGCGTCTGATGTGAAGGGGTCGATACGCACCCAAAGCAATGAGAATATGGATGCAAGGAGAACAGCCCAGACAATGACAATGGTAGGAGTACGATTCTGACGTCCCAACAAACCTTTGAGGAAAGGGTACAAGTGGACAATGACCCAAATGGCAAAGAACAACTTCCCGAATAGAGGACCCCATGATTGATATCCACTGTTTATGGCATACGAAACACCTGCCACAATTCCTACCAGATTCACGATAAGGATTGCTGT</genome_strand>
        <mrna_strand>TTTTTTT.......................................................................................................................................................................................................................................................................................TAAGATAACAAAATTAAATTTAAAATTCTTCACATCATAAGTCACAGTTTTTGCATGAACATGTGAGATAGGGCAAAAGGTATACAACAAAAAGGCGTAAATCCATGAGTTTTGATGTCTTTCATGCATCACACTCCTTCCGACTTACAACATTGGTACAAAATGACTACAGGACTTAACCGAACCGGCATAGTTTTCTTATATACAACATGAGAATGGATAAGCAAACATCTTACCTTAAAATAAATAAACTTCTCACTAACAGTTGATACCACATTGACCTCTTGCAGCAGTCTTTGACGCGTCTGATGTGAAGGGGTCGATACGCACCCAAAGCAATGAGAATATGGATGCAAGGAGAACAGCCCAGACAATGACAATGGTAGGAGTACGATTCTGACGTCCCAACAAACCTTTGAGGAAAGGGTACAAGTGGACAATGACCCAAATGGCAAAGAACAACTTCCCGAATAGAGGACCCCATGATTGATATCCACTGTTTATGGCATACGAAACACCTGCCACAATTCCTACCAGATTCACGATAAGGATTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233896" ref_strand="+" ref_description="SGN-E233896 [cLEL-8-N10](-)">
      <seq>ctttcctcaaaggtttgttggaacgtcagaatcgtactccgaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactggttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtataccttttgccctatctcacatgttcatgcaaaaactgtgacttatgatgtgaagaattttaaatttaattttgtataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="94011" stop="95030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94311" g_stop="94726" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="438"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-E233896" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94311" e_stop="94726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACT-GTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTT</genome_strand>
        <mrna_strand>CTTTCCTCAAAGGTTTGTTGGAACGTCAGAATCGTACTCCGACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349818" ref_strand="+" ref_description="SGN-E349818 [cTOS-3-I17]">
      <seq>ctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttataggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctaattggatcagcagctggtgctatatctagcactgcaacctttcctctagaggtggctcgtaagcacatgcaggtgggtgctgttagtggaagagcagtttacaagaatgtaattcatgctcttgtgagtatactggaacaggatgggattcagggtctgtataaagggcttggtcccagctgcatgaagttagttcctgccgcaggaatatctttcatgtgttatgaagcatgcaagaggatattggttgaggcagaaaatgagaagtaaaggagctctttcagaaatatgctaggcaaagggtagggaaaatctctttatacgattgagttttatttatcttgctccattttccagacgctggaaattttgttttggattgagcctggtttgtcaggtgagaaatgctaatactggttttagtccttttttcactactgaatcaagataatgaaatgcagtttgatggtaagatattgccattgccgctttgtgattgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="96455" stop="95021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96155" g_stop="96129" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96028" g_stop="95321" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="735" r_length="708" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E349818" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96155" e_stop="96129"/>
          <exon e_start="96028" e_stop="95321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTGAAA</genome_strand>
        <mrna_strand>CTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624565" ref_strand="+" ref_description="SGN-E624565 [GI|4138580]">
      <seq>ttgaatgtcccaaattgtctgctcacataaaatctgactattttcttgtgttctcaaattctacattgagaagggaaaagggtattttttggttttttgtggggaagtctagattgatggctagaagggatatacaagctttggagtgtaaaaaggatgggagtatgtctatttctcatttggggctccaatggagtctccaagattcaaacttttgtcctggtggacttgtttgcatcagttggtcagatgggaagtatgggttttggtgtttcatcacctaatccatctgattcccgggatgaaaatggtggattcaagctaccttattccgatttgtgtatgaaatatttatcattctctgaggggtttaagattgtagggaatggggaggaagaaggggttgtgaaggagaagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcactaaggaggttaataagtggtgcaatcgcaggggcgatatctagaactgctgtagctccattgggaacaataaggacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggttggactggattgtttaggggtaactttgttaatgtgattcgagttgcccctagcaaagctgtagagctttttgtgtatgatactgttaataagaacttgtcatctaaacccggtgagcaatccaaaattccaattcctgcctcattagttgcaggagcgtgcgccggagtcagctctaccttactgacatacccacttgagctagtgaagactcggttgacaattcagagaggagtttacaatggtttacttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactccaagtgttataggagtcattccctatgccgccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctgattggatcagcagctggtgctatatctagcactgcaacctttcctctggaggtggctcgtaagcacatgcaggtgggtgctgttagtggaagagcagtttacaagaatgtaattcatgctcttgtgagtatacttgaacaggatgggattcatggtctgtataaagggcttggtcccagctgcatgaagttagttcctgccgcaggaatatctttcatgtgttatgaagcatgcaagaggatattgatagaggcagaaaatgaagagtaaaatgagctccttcataaatatgctacgagcaattcaagattaggcaaagggtagggaaaattgagttttatttatcttgctcctttttccagacgctggaaattttgttttggattgagcctggtttgtcaggtgagaatgctgatactggttttggtctctcttttttcactactgaatgaaatgcagtttgatggcaagatattgccaattaccgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99185" stop="95032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98831" g_stop="98229" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="678" r_length="604" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96290" g_stop="96129" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="840" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96028" g_stop="95332" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="1535" r_length="695" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E624565" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>1462</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98831" e_stop="98229"/>
          <exon e_start="96290" e_stop="96129"/>
          <exon e_start="96028" e_stop="95332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGA-TTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAGGTAAAATTTAAGTGTATTTTGTAAAATTGAGTTTAGACCCTTTTAATGCTGATAATGTTTGTCATTGATAAAAATGGTTTATCTCATTAGAAGTTGTTCTATTTTACTGTATGAATTCCTTGCTTAGCTGATTTGAAGTCTCAGAAAGTTTGAAATTTTGTTTCAGACTTCAATCATAATAATACTGACATAAGCTGTCATCATTCAGAAAATGACTGTTCTCTTTAATTGAAGTAGATGTATGTTCCTTGTTTCATCTATTAATGTTAGGTTGATGGAAAAATTCCCCTATAACAGATCACCAATAATCTCGATGTTAATACTTTGTATTTGCTGCCTCTCTTATTAGTAGCTGTTGCAGCATTTACCTAATAGATGAGTATTCAAACTCATCCTTACTCTGTGCATGTATGTTCCTTGTTTCTCTATTAATGTTAGGTTGATGGAGACATGCTTTTTGTTTCGAGGGACTGTAGGACTAAACATCTGAGGATGCCACTTCCCTTTTTCTTCTTTTAAACTTTTGTTGCTATTGGCACTTTGGTCAGTGGATCAGGAATATAAGAGACAAGATAGGATCTATCAACACTTATCTTTAGTAATGAACTTTCTCGAAATCTAGCAAGTGTTTTGTGTCCCATTATTTTCCGACCTGATTGATTTTCTTTTCATGTATGCAATAACTTCTTGTAAGGAACTGTTAGCAAAGGTTTTTTCAATCTGAGAATTATATGCAATAATCTCAATTAGTGCCTTGGAAATTACTTGTTTAGCCTCATTTTTTTTCTTTTTTGTATATTGGAGTTAACCTGATTTATTGGATTGCTAGGTCTAAATTGAGCAACATGGTTAATGAGAATTTCTCATAGCCGAACCGAATGAGCTAGATATCGAGGCATAGTAATAGTAGTAGTTTGGTTGTTGTTGGAGTGAAACTGCTTAACGGAGGCAATTTTAATTTTGATGGGTTGGTGGTTTAGGAAAAACGGCATGGTGGCTCATTTTTTCCTTATATTTTGATGCTACTGGTCCTTTGGGTTGTGAATCATTAATCAAGTCTGGTTAACACTACAGATGAAGCTCTTCTTTTGTAATGACTTTTTCTTCCATTTTGACTGATTAGCGTTGCATGAATATCTCGATGCAAAGCCAAAAAATCTGTTTAATTCTCTTATTGTTCCTCTGATGCAGTTCTCTACTTTTCTAGCCTGTGAAATTTTCAGTGTTTACAGTGCATGACATGTATGCATCAGAATACTTGATTTTACTTCAGAGTAACTATTTTTGACTCCCTTAAGAGGAAATGGAAATGAGAGACTAGAACTGTTTTTGTTTAAATTGTTCTTCAAAACTTCCCTGCTCTCTTCCAATTTTTTCATGAAGGCAATGCAGCCTTTCATCTGTTTACCCACCTTAGAGTTTAAATCAGTATGTAAGTGACTGTTGAATAGATTTTTATTGGTGAAACCTGCTAATATTTCCTCTGCTGCACTGCTGGCTTTCTTGTCTAACTATTTTGACATACCCTTACACTCTGTTTTACTTTATTTACGTAGCCAAATGACATAGATGTAAAGTCTACTTAAATATCAATGTGTCGCTTGTTTTGTGGAGAAAGCTAGTGTTACTTAATTACTGAAGTTGACAAGTACTGTGGTGCAATTCTGTTAATTGATTTAGAGTTCTGAAAGACCAGCTCCTGCTAGCTGAATGATTTTTAGCAGGTTTCTTTCTGTTACTTTGTCTGGATTTTGTTGTAGCTACAACTATATGGTAATTCCATGTTGTGTTAATGTTTGTTACTTGACGTGTATGGATAAATTGTCAATAGCTGAGTTAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGT-AAAGGAGCTCTTTCAGAAATATGCTA-G-GCAA---AGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTG</genome_strand>
        <mrna_strand>GAAAAGGGTATTTTTTGGTTTTTTGTGGGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCTTTGGAGTGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTCCAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGACTTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGTTTTGGTGTTTCATCACCTAATCCATCTGATTCCCGGGATGAAAATGGTGGATTCAAGCTACCTTATTCCGATTTGTGTATGAAATATTTATCATTCTCTGAGGGGTTTAAGATTGTAGGGAATGGGGAGGAAGAAGGGGTTGTGAAGGAGAAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCACTAAGGAGGTTAATAAGTGGTGCAATCGCAGGGGCGATATCTAGAACTGCTGTAGCTCCATTGGGAACAATAAGGACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGTTGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTCGAGTTGCCCCTAGCAAAGCTGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTGAGCAATCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCGTGCGCCGGAGTCAGCTCTACCTTACTGACATACCCACTTGAGCTAGTGAAGACTCGGTTGACAATTCAG....................................................................................................AGAGGAGTTTACAATGGTTTACTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCAAGTGTTATAGGAGTCATTCCCTATGCCGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTGATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTGGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTTGAACAGGATGGGATTCATGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGATAGAGGCAGAAAATGAAGAGTAAAATGAGCTCCTTCATAAATATGCTACGAGCAATTCAAGATTAGGCAAA-GGGTAGGGAAAATTGAGTTTTATTTATCTTGCTCCTTTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAG-AATGCTGATACTGGTTTTGGTCTCTCTTTTTTCACT--A-C-TG--AATGAAATGCAGTTTGATGGCAAGATATTGCCAATTACCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276349" ref_strand="+" ref_description="SGN-E276349 [cLEN-21-P14]">
      <seq>ttttgtgtattatactgttaataagaacttgtcatctaaacccggtaaccagtccaaaattccaattcctgcctcattagttgcaggagcctgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttataggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctaattggatcagcagctggtgctatatctagcactgcaacctttcctctagaggtggctcgtaagcacatgcaagtgggtgctgttagtggaagagcagtttacaagaatgtaattcatgctcttgtgagtatactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="96588" stop="95388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96288" g_stop="96129" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96028" g_stop="95688" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="501" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E276349" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96288" e_stop="96129"/>
          <exon e_start="96028" e_stop="95688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGA</genome_strand>
        <mrna_strand>TTTTGTGTATTATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAAGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347899" ref_strand="+" ref_description="SGN-E347899 [cTOF-31-G20]">
      <seq>ggttgtaaaggaggaagagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcgatcgccggggcgatatctagaactgctgtagctccgttggagaccataagaacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggatggactggattgtttaggggtaactttgttaatgtgattagagttgcccctagcaaagctgtagagctttttgtgtatgatactgttaataagaacttgtcatctaaacccggtaaccagtccaaaattccaattcctgcctcattagttgcaggagcctgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttataggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctaattggatcagcagctggtgctatatctagcactgcaacctttcctctagaggtgggctcgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="98805" stop="95462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98505" g_stop="98229" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96290" g_stop="96129" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="439" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96028" g_stop="95762" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="707" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E347899" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98505" e_stop="98229"/>
          <exon e_start="96290" e_stop="96129"/>
          <exon e_start="96028" e_stop="95762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAGGTAAAATTTAAGTGTATTTTGTAAAATTGAGTTTAGACCCTTTTAATGCTGATAATGTTTGTCATTGATAAAAATGGTTTATCTCATTAGAAGTTGTTCTATTTTACTGTATGAATTCCTTGCTTAGCTGATTTGAAGTCTCAGAAAGTTTGAAATTTTGTTTCAGACTTCAATCATAATAATACTGACATAAGCTGTCATCATTCAGAAAATGACTGTTCTCTTTAATTGAAGTAGATGTATGTTCCTTGTTTCATCTATTAATGTTAGGTTGATGGAAAAATTCCCCTATAACAGATCACCAATAATCTCGATGTTAATACTTTGTATTTGCTGCCTCTCTTATTAGTAGCTGTTGCAGCATTTACCTAATAGATGAGTATTCAAACTCATCCTTACTCTGTGCATGTATGTTCCTTGTTTCTCTATTAATGTTAGGTTGATGGAGACATGCTTTTTGTTTCGAGGGACTGTAGGACTAAACATCTGAGGATGCCACTTCCCTTTTTCTTCTTTTAAACTTTTGTTGCTATTGGCACTTTGGTCAGTGGATCAGGAATATAAGAGACAAGATAGGATCTATCAACACTTATCTTTAGTAATGAACTTTCTCGAAATCTAGCAAGTGTTTTGTGTCCCATTATTTTCCGACCTGATTGATTTTCTTTTCATGTATGCAATAACTTCTTGTAAGGAACTGTTAGCAAAGGTTTTTTCAATCTGAGAATTATATGCAATAATCTCAATTAGTGCCTTGGAAATTACTTGTTTAGCCTCATTTTTTTTCTTTTTTGTATATTGGAGTTAACCTGATTTATTGGATTGCTAGGTCTAAATTGAGCAACATGGTTAATGAGAATTTCTCATAGCCGAACCGAATGAGCTAGATATCGAGGCATAGTAATAGTAGTAGTTTGGTTGTTGTTGGAGTGAAACTGCTTAACGGAGGCAATTTTAATTTTGATGGGTTGGTGGTTTAGGAAAAACGGCATGGTGGCTCATTTTTTCCTTATATTTTGATGCTACTGGTCCTTTGGGTTGTGAATCATTAATCAAGTCTGGTTAACACTACAGATGAAGCTCTTCTTTTGTAATGACTTTTTCTTCCATTTTGACTGATTAGCGTTGCATGAATATCTCGATGCAAAGCCAAAAAATCTGTTTAATTCTCTTATTGTTCCTCTGATGCAGTTCTCTACTTTTCTAGCCTGTGAAATTTTCAGTGTTTACAGTGCATGACATGTATGCATCAGAATACTTGATTTTACTTCAGAGTAACTATTTTTGACTCCCTTAAGAGGAAATGGAAATGAGAGACTAGAACTGTTTTTGTTTAAATTGTTCTTCAAAACTTCCCTGCTCTCTTCCAATTTTTTCATGAAGGCAATGCAGCCTTTCATCTGTTTACCCACCTTAGAGTTTAAATCAGTATGTAAGTGACTGTTGAATAGATTTTTATTGGTGAAACCTGCTAATATTTCCTCTGCTGCACTGCTGGCTTTCTTGTCTAACTATTTTGACATACCCTTACACTCTGTTTTACTTTATTTACGTAGCCAAATGACATAGATGTAAAGTCTACTTAAATATCAATGTGTCGCTTGTTTTGTGGAGAAAGCTAGTGTTACTTAATTACTGAAGTTGACAAGTACTGTGGTGCAATTCTGTTAATTGATTTAGAGTTCTGAAAGACCAGCTCCTGCTAGCTGAATGATTTTTAGCAGGTTTCTTTCTGTTACTTTGTCTGGATTTTGTTGTAGCTACAACTATATGGTAATTCCATGTTGTGTTAATGTTTGTTACTTGACGTGTATGGATAAATTGTCAATAGCTGAGTTAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGT-GGCTCGTAAG</genome_strand>
        <mrna_strand>GGTTGTAAAGGAGGAAGAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACCATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGGCTCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705073" ref_strand="+" ref_description="SGN-E705073 [FA26AD02]">
      <seq>ccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatggggtttggtgtttcatcacctaatccttctgattcccgggatgaaaatggtggatttaagctaccttattccgatttgtgtttgaaatatttatcattctccgaggggtttaagattgcaggcaatggggaggaagaaggggttgtaaaggaggagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcgatcgccggggcgatatctagaactgctgtagctccgttggagacaataagaacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggatggactggattgtttaggggtaactttgttaatgtgattagagttgcccctagcaaagctgtagagctttttgtgtatgatactgttaataagaacttgtcatctaaacccggtaaccagtccaaaattccaattcctgcctcattagttgcaggagcctgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttataggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcanggaagagaagatttggaacatagagactcttctattnggatcagcagctggtgctatatctagcactgcaacctttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99006" stop="95479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98706" g_stop="98229" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96290" g_stop="96129" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="640" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96028" g_stop="95779" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="890" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E705073" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98706" e_stop="98229"/>
          <exon e_start="96290" e_stop="96129"/>
          <exon e_start="96028" e_stop="95779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAGGTAAAATTTAAGTGTATTTTGTAAAATTGAGTTTAGACCCTTTTAATGCTGATAATGTTTGTCATTGATAAAAATGGTTTATCTCATTAGAAGTTGTTCTATTTTACTGTATGAATTCCTTGCTTAGCTGATTTGAAGTCTCAGAAAGTTTGAAATTTTGTTTCAGACTTCAATCATAATAATACTGACATAAGCTGTCATCATTCAGAAAATGACTGTTCTCTTTAATTGAAGTAGATGTATGTTCCTTGTTTCATCTATTAATGTTAGGTTGATGGAAAAATTCCCCTATAACAGATCACCAATAATCTCGATGTTAATACTTTGTATTTGCTGCCTCTCTTATTAGTAGCTGTTGCAGCATTTACCTAATAGATGAGTATTCAAACTCATCCTTACTCTGTGCATGTATGTTCCTTGTTTCTCTATTAATGTTAGGTTGATGGAGACATGCTTTTTGTTTCGAGGGACTGTAGGACTAAACATCTGAGGATGCCACTTCCCTTTTTCTTCTTTTAAACTTTTGTTGCTATTGGCACTTTGGTCAGTGGATCAGGAATATAAGAGACAAGATAGGATCTATCAACACTTATCTTTAGTAATGAACTTTCTCGAAATCTAGCAAGTGTTTTGTGTCCCATTATTTTCCGACCTGATTGATTTTCTTTTCATGTATGCAATAACTTCTTGTAAGGAACTGTTAGCAAAGGTTTTTTCAATCTGAGAATTATATGCAATAATCTCAATTAGTGCCTTGGAAATTACTTGTTTAGCCTCATTTTTTTTCTTTTTTGTATATTGGAGTTAACCTGATTTATTGGATTGCTAGGTCTAAATTGAGCAACATGGTTAATGAGAATTTCTCATAGCCGAACCGAATGAGCTAGATATCGAGGCATAGTAATAGTAGTAGTTTGGTTGTTGTTGGAGTGAAACTGCTTAACGGAGGCAATTTTAATTTTGATGGGTTGGTGGTTTAGGAAAAACGGCATGGTGGCTCATTTTTTCCTTATATTTTGATGCTACTGGTCCTTTGGGTTGTGAATCATTAATCAAGTCTGGTTAACACTACAGATGAAGCTCTTCTTTTGTAATGACTTTTTCTTCCATTTTGACTGATTAGCGTTGCATGAATATCTCGATGCAAAGCCAAAAAATCTGTTTAATTCTCTTATTGTTCCTCTGATGCAGTTCTCTACTTTTCTAGCCTGTGAAATTTTCAGTGTTTACAGTGCATGACATGTATGCATCAGAATACTTGATTTTACTTCAGAGTAACTATTTTTGACTCCCTTAAGAGGAAATGGAAATGAGAGACTAGAACTGTTTTTGTTTAAATTGTTCTTCAAAACTTCCCTGCTCTCTTCCAATTTTTTCATGAAGGCAATGCAGCCTTTCATCTGTTTACCCACCTTAGAGTTTAAATCAGTATGTAAGTGACTGTTGAATAGATTTTTATTGGTGAAACCTGCTAATATTTCCTCTGCTGCACTGCTGGCTTTCTTGTCTAACTATTTTGACATACCCTTACACTCTGTTTTACTTTATTTACGTAGCCAAATGACATAGATGTAAAGTCTACTTAAATATCAATGTGTCGCTTGTTTTGTGGAGAAAGCTAGTGTTACTTAATTACTGAAGTTGACAAGTACTGTGGTGCAATTCTGTTAATTGATTTAGAGTTCTGAAAGACCAGCTCCTGCTAGCTGAATGATTTTTAGCAGGTTTCTTTCTGTTACTTTGTCTGGATTTTGTTGTAGCTACAACTATATGGTAATTCCATGTTGTGTTAATGTTTGTTACTTGACGTGTATGGATAAATTGTCAATAGCTGAGTTAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTC</genome_strand>
        <mrna_strand>CCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCANGGAAGAGAAGATTTGGAACATAGAGACTCTTCTATTNGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249772" ref_strand="+" ref_description="SGN-E249772 [cLEF-57-O22]">
      <seq>taaccttttgagtcatacaattgtgcttccaactacggatgggagaatgcttcactactaaaagtggctagtcatggctgatataattttttttaatgcagctttttgtgtatgatactgttaataagaacttgtcatctaaacccggtaaccagtccaaaattccaattcctgcctcattagttgcaagagcctgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttattaggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctaattggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="96691" stop="95516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96391" g_stop="96129" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96028" g_stop="95816" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="477" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E249772" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96391" e_stop="96129"/>
          <exon e_start="96028" e_stop="95816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTA-TAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCA</genome_strand>
        <mrna_strand>TAACCTTTTGAGTCATACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTAGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAAGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATTAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418336" ref_strand="+" ref_description="SGN-E418336 [STM-27-E18]">
      <seq>gggaagtctagattgatggctagaagggatatacaagcgttggagtgtaaaaaggatgggagtatgtctatttctcatttggggctccaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatgggctttggtgtttcatcacctaatccatctgattgccgggatgaaaatggtggattcaagctaccttattccgatttgtgtatgaaatatttatcattctctgaggggtttaagattgtagggaatggggaggaagaaggggttgcgaaggagaagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcaatcgcacgggcgatatctagaactgctgtagctccattggagacaataaggacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaacgatggactggattgtatangggtaactttgctaatgtgattcgagctgcccctagcatagctgtagagctctttgcgtatgatactgttcataagaacgtgtcatctatacccggtgagcaatccaaaattccaattcctgcctcattagttgcaggagcgtgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99103" stop="95839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98804" g_stop="98229" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.898" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96290" g_stop="96139" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="728" r_length="152" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E418336" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98804" e_stop="98229"/>
          <exon e_start="96290" e_stop="96139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAGGTAAAATTTAAGTGTATTTTGTAAAATTGAGTTTAGACCCTTTTAATGCTGATAATGTTTGTCATTGATAAAAATGGTTTATCTCATTAGAAGTTGTTCTATTTTACTGTATGAATTCCTTGCTTAGCTGATTTGAAGTCTCAGAAAGTTTGAAATTTTGTTTCAGACTTCAATCATAATAATACTGACATAAGCTGTCATCATTCAGAAAATGACTGTTCTCTTTAATTGAAGTAGATGTATGTTCCTTGTTTCATCTATTAATGTTAGGTTGATGGAAAAATTCCCCTATAACAGATCACCAATAATCTCGATGTTAATACTTTGTATTTGCTGCCTCTCTTATTAGTAGCTGTTGCAGCATTTACCTAATAGATGAGTATTCAAACTCATCCTTACTCTGTGCATGTATGTTCCTTGTTTCTCTATTAATGTTAGGTTGATGGAGACATGCTTTTTGTTTCGAGGGACTGTAGGACTAAACATCTGAGGATGCCACTTCCCTTTTTCTTCTTTTAAACTTTTGTTGCTATTGGCACTTTGGTCAGTGGATCAGGAATATAAGAGACAAGATAGGATCTATCAACACTTATCTTTAGTAATGAACTTTCTCGAAATCTAGCAAGTGTTTTGTGTCCCATTATTTTCCGACCTGATTGATTTTCTTTTCATGTATGCAATAACTTCTTGTAAGGAACTGTTAGCAAAGGTTTTTTCAATCTGAGAATTATATGCAATAATCTCAATTAGTGCCTTGGAAATTACTTGTTTAGCCTCATTTTTTTTCTTTTTTGTATATTGGAGTTAACCTGATTTATTGGATTGCTAGGTCTAAATTGAGCAACATGGTTAATGAGAATTTCTCATAGCCGAACCGAATGAGCTAGATATCGAGGCATAGTAATAGTAGTAGTTTGGTTGTTGTTGGAGTGAAACTGCTTAACGGAGGCAATTTTAATTTTGATGGGTTGGTGGTTTAGGAAAAACGGCATGGTGGCTCATTTTTTCCTTATATTTTGATGCTACTGGTCCTTTGGGTTGTGAATCATTAATCAAGTCTGGTTAACACTACAGATGAAGCTCTTCTTTTGTAATGACTTTTTCTTCCATTTTGACTGATTAGCGTTGCATGAATATCTCGATGCAAAGCCAAAAAATCTGTTTAATTCTCTTATTGTTCCTCTGATGCAGTTCTCTACTTTTCTAGCCTGTGAAATTTTCAGTGTTTACAGTGCATGACATGTATGCATCAGAATACTTGATTTTACTTCAGAGTAACTATTTTTGACTCCCTTAAGAGGAAATGGAAATGAGAGACTAGAACTGTTTTTGTTTAAATTGTTCTTCAAAACTTCCCTGCTCTCTTCCAATTTTTTCATGAAGGCAATGCAGCCTTTCATCTGTTTACCCACCTTAGAGTTTAAATCAGTATGTAAGTGACTGTTGAATAGATTTTTATTGGTGAAACCTGCTAATATTTCCTCTGCTGCACTGCTGGCTTTCTTGTCTAACTATTTTGACATACCCTTACACTCTGTTTTACTTTATTTACGTAGCCAAATGACATAGATGTAAAGTCTACTTAAATATCAATGTGTCGCTTGTTTTGTGGAGAAAGCTAGTGTTACTTAATTACTGAAGTTGACAAGTACTGTGGTGCAATTCTGTTAATTGATTTAGAGTTCTGAAAGACCAGCTCCTGCTAGCTGAATGATTTTTAGCAGGTTTCTTTCTGTTACTTTGTCTGGATTTTGTTGTAGCTACAACTATATGGTAATTCCATGTTGTGTTAATGTTTGTTACTTGACGTGTATGGATAAATTGTCAATAGCTGAGTTAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTT</genome_strand>
        <mrna_strand>GGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTGGAGTGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTCCAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGCTTTGGTGTTTCATCACCTAATCCATCTGATTGCCGGGATGAAAATGGTGGATTCAAGCTACCTTATTCCGATTTGTGTATGAAATATTTATCATTCTCTGAGGGGTTTAAGATTGTAGGGAATGGGGAGGAAGAAGGGGTTGCGAAGGAGAAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCAATCGCACGGGCGATATCTAGAACTGCTGTAGCTCCATTGGAGACAATAAGGACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAACGATGGACTGGATTGTATANGGGTAACTTTGCTAATGTGATTCGAGCTGCCCCTAGCATAGCTGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGCGTATGATACTGTTCATAAGAACGTGTCATCTATACCCGGTGAGCAATCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCGTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581592" ref_strand="+" ref_description="SGN-E581592 [6746]">
      <seq>gttttttgtggggaagtctagattgatggctagaagggatatacaagctttggagtgtaaaaaggatgggagtatgtctatttctcatttggggctccaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatgggttttggtgtttcatcacctaatccatctgattcccgggatgaaaatggtggattcaagctaccttattccgatttgtgtatgaaatatttatcattatctgaggggtttaagattgtagggaatggggaggaagaaggggttgtgaaggagaagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcactaaggaggttaataagtggtgcaatcgcaggggcgatatctagaactgctgtagctccattggagacaataaggacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggatggactggattgtttaggggtaactttgttaatgtgattcgagttgccctagcaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99114" stop="97934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98814" g_stop="98234" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E581592" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98814" e_stop="98234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTG</genome_strand>
        <mrna_strand>GTTTTTTGTGGGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCTTTGGAGTGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTCCAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGTTTTGGTGTTTCATCACCTAATCCATCTGATTCCCGGGATGAAAATGGTGGATTCAAGCTACCTTATTCCGATTTGTGTATGAAATATTTATCATTATCTGAGGGGTTTAAGATTGTAGGGAATGGGGAGGAAGAAGGGGTTGTGAAGGAGAAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCACTAAGGAGGTTAATAAGTGGTGCAATCGCAGGGGCGATATCTAGAACTGCTGTAGCTCCATTGGAGACAATAAGGACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTCGAGTTG-CCCTAGCAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441399" ref_strand="+" ref_description="SGN-E441399 [cSTA-30-C14]">
      <seq>gggaagtctagattgatggctagaagggatatacaagcgttggagtgtaaaaaggatgggagtatgtctatttctcatttggggctccaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatgggctttggtgtttcatcacctaatccatctgattgccgggatgaaaatggtggattcaagctaccttattccgatttgtgtatgaaatatttatcattctctgaggggtttaagattgtagggaatggggaggaagaaggggttgtgaaggagaagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcaatcgcaggggcgatatctagaactgctgtagctccattggagacaataaggacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggatggactggattgtttaggggtaactttgttaatgtgattcgagttgcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99103" stop="97944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98804" g_stop="98244" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E441399" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98804" e_stop="98244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCT</genome_strand>
        <mrna_strand>GGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTGGAGTGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTCCAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGCTTTGGTGTTTCATCACCTAATCCATCTGATTGCCGGGATGAAAATGGTGGATTCAAGCTACCTTATTCCGATTTGTGTATGAAATATTTATCATTCTCTGAGGGGTTTAAGATTGTAGGGAATGGGGAGGAAGAAGGGGTTGTGAAGGAGAAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCAATCGCAGGGGCGATATCTAGAACTGCTGTAGCTCCATTGGAGACAATAAGGACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTCGAGTTGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730629" ref_strand="+" ref_description="SGN-E730629 [LA24CG12]">
      <seq>cgttataggtgtgatttctacaaatcttttcctcctttcgttttctggggttggaagggagaggaacagagtcaccactgttactcatttttcatcctaacaaacatagcatatatcgcctcccatcccccaagatattatcaatatctcttcaaaaattcgatctttactcattaatctcacaacccctcttctcaagaatgggattttaatatacccacttagtaaaaatcgattctttgaatgtcccaaattgtctgtgagttttttcttgttttctcaagctctacattgaaaagggtaatttttggttttttgtgaggaagtctagattgatggctagaagggatatacaagcgtttgagcgtaaaaaggatgggagtatgtctatttctcatttggggctacaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatggggtttggtgtttcatcacctaatccttctgattcccgggatgaaaatggtggatttaagctaccttattccgatttgtgtttgaaatatttatcattctccgaggggtttaagattgcaggcaatggggaggaagaaggggttgtaaaggagaagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcgatcgccggggcgatatctagaactgctgtagctccgttggagacaataagaacacatttgatggtgggaagtagtggacattctagtactgagggtgttcatagtatcatgaagactgaaggatggactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99423" stop="97986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99124" g_stop="98286" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E730629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99124" e_stop="98286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGAGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGA-GGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGA</genome_strand>
        <mrna_strand>CGTTATAGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGAAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGGTGTTC-ATAGTATCATGAAGACTGAAGGATGGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581593" ref_strand="+" ref_description="SGN-E581593 [6746]">
      <seq>tgatggctagaagggatatacaagctttggagtgtaaaaaggatgggagtatgtctatttctcatttggggctccaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatgggttttggtgtttcatcacctaatccatctgattcccgggatgaaaatggtggattcaagctaccttattccgatttgtgtatgaaatatttatcattatctgaggggtttaagattgtatggaatggggaggaagaaggggttgtgaaggagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99091" stop="98190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98791" g_stop="98490" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E581593" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98791" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAG</genome_strand>
        <mrna_strand>TGATGGCTAGAAGGGATATACAAGCTTTGGAGTGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTCCAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGTTTTGGTGTTTCATCACCTAATCCATCTGATTCCCGGGATGAAAATGGTGGATTCAAGCTACCTTATTCCGATTTGTGTATGAAATATTTATCATTATCTGAGGGGTTTAAGATTGTATGGAATGGGGAGGAAGAAGGGGTTGTGAAGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252573" ref_strand="+" ref_description="SGN-E252573 [cLEG-20-I17]">
      <seq>aggaacagagtcaccactgttactcatttttcatcctaacaaacatagcatatatcgcctcccatcccccaagatattatcaatatctcttcaaaaattcgatctttactcattaatctcacaacccctcttctcaagaatgggattttaatatacccacttagtaaaaatcgattctttgaatgtcccaaattgtctgtgagttttttcttgttttctcaagctctacattgaaaagggtaatttttggttttttgtgaggaagtctagattgatggctagaagggatatacaagcgtttgagcgtaaaaaggatgggagtatgtctatttctcatttggggctacaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatggggtttggtgtttcatcacctaatccttctgattcccgggatgaaaatggtggatttaagctaccttattccgatttgtgtttgaaatatttatcattctccgaggggtttaagattgcaggcaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99363" stop="98216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99063" g_stop="98516" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E252573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99063" e_stop="98516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGG</genome_strand>
        <mrna_strand>AGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252476" ref_strand="+" ref_description="SGN-E252476 [cLEG-20-I5]">
      <seq>atcccccaagatattctcaatatatcttcaatgattccatctaaactcataaatctcacgacccctattgtcaagaatgggatcttaatatacccacttagtaaaaatcgattcttagaatgtcccaaattgtctgtgagttttttcttgtactctcaagctctacattgaaaagggtaatttttggttttttgtgaggaagtctagattgatggctagaagggatatacaagcgtatgagcgtaaaacggatgggagtatgtctatttctcatttggggctacaatggagtctccaagattcaaacttttgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-EZM3G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99300" stop="98384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99000" g_stop="98684" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-E252476" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99000" e_stop="98684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTG</genome_strand>
        <mrna_strand>ATCCCCCAAGATATTCTCAATATATCTTCAATGATTCCATCTAAACTCATAAATCTCACGACCCCTATTGTCAAGAATGGGATCTTAATATACCCACTTAGTAAAAATCGATTCTTAGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTACTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTATGAGCGTAAAACGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>93</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2571" PGL_stop="6118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2571" e_stop="2735"/>
            <exon e_start="2890" e_stop="3067"/>
            <exon e_start="3200" e_stop="3356"/>
            <exon e_start="5682" e_stop="6118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2571" e_stop="2735" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2890" e_stop="3067" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3200" e_stop="3356" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5682" e_stop="6118" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2571" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2571" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2578" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2589" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="6118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2597" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2597" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2599" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2693" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="5739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG : GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG : ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT : ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAATTTG</gDNA_template>
            <first_frame> L  F  *  I  K  Y  E  T  V  L  F  P  *  F  S  V  F  F  K  C  R  E  K  C  K  S  K  R  R  V  L  L  P  L  V  H  Y  L  Q  V  V  R  D  H  L  V  Q  L  Y  I  M  N  S  K  K  :  V  W  R  V  M  M  R  S  E  E  C  R  R  W  A  E  K  R  R  G  Q  R  Q  L  L  E  E  M  E  Y  R  P  P  V  K  L  N  H  Q  L  G  L  K  G  R  E  E  E  A  Q  L  T  K  K  T  K  G  *  K   : D  C  *  E  I  E  Y  Q  H  N  K  Q  G  R  G  R  K  H  I  *  *  I  W  K  Q  G  *  R  N  W  K  Q  R  M  Q  N  L  K  R  G  C  L  L  C  K  M  R  T  K  C  L  D  I :   Y  *  R  T  Q  Q  Q  V  H  R  K  G  G  S  R  H  M  I  D  L  M  S  I  C  Q  H  S  C  L  D  P  M  *  A  L  K  R  N  S  L  L  D  L  R  M  H  A  S  F  G  W  I  V  L  I  *  C  I  A  Y  L  L  L  L  T  V  V  G  Y  I  L  S  A  E  S  E  G  L  W  L  S  Y  S  *  S  H  Q  P  L  V  S  C  M  D  *  S  W  M  I  Y  A  T  I  T  Y  N  L  C  *  R  S  L  V  S  *  N  L  Y  *  K  P  N  R  C  T  D  K  T  R  C  K  R  I  C  A  I  E  N  Q  L  G  T  F  K  F  </first_frame>
            <second_frame>  F  S  E  *  N  T  K  L  Y  F  S  L  N  L  V  F  F  S  S  V  E  K  N  A  R  A  S  D  E  F  Y  C  R  *  F  T  T  F  K  *  *  E  I  I  *  F  S  F  T  S  *  T  Q  R  R :   Y  G  E  *  *  *  D  Q  K  S  A  G  D  G  R  R  S  D  G  D  N  V  S  F  W  K  R  W  S  I  G  R  R  S  S  S  T  I  S  W  D  S  K  E  E  R  K  K  P  S  *  Q  R  K  Q  K  V  K  K  :  I  V  E  K  *  S  I  S  T  T  S  K  G  E  E  E  S  I  F  D  R  S  G  S  K  G  E  G  I  G  N  K  E  C  R  T  *  R  E  V  V  Y  F  A  K  *  E  P  N  A  *  T   : Y  T  E  E  H  N  S  R  C  T  G  R  E  E  V  D  I  *  S  I  L  C  R  Y  V  S  I  L  V  *  I  L  C  R  H  *  R  E  I  L  F  W  I  *  E  C  M  L  V  S  G  G  L  F  *  F  D  A  L  H  T  C  Y  S  *  P  L  S  V  I  Y  Y  Q  Q  R  V  K  D  C  G  *  A  I  L  K  V  T  S  L  W  *  V  A  W  T  N  L  G  *  Y  M  L  Q  L  P  I  T  F  A  S  V  P  *  *  V  E  I  F  I  K  N  Q  I  D  V  L  I  R  L  G  V  K  E  F  V  Q  L  K  T  N  *  V  H  S  N  L </second_frame>
            <third_frame>   F  L  N  K  I  R  N  C  T  F  P  L  I  *  C  F  F  Q  V  *  R  K  M  Q  E  Q  A  T  S  S  I  A  A  S  S  L  P  S  S  S  E  R  S  S  S  S  A  L  H  H  E  L  K  E   : G  M  E  S  D  D  E  I  R  R  V  P  E  M  G  G  E  A  T  G  T  T  S  A  S  G  R  D  G  V  S  A  A  G  Q  A  Q  P  S  A  G  T  Q  R  K  R  G  R  S  P  A  D  K  E  N  K  R  L  K  R :   L  L  R  N  R  V  S  A  Q  Q  A  R  E  R  K  K  A  Y  L  I  D  L  E  A  R  V  K  E  L  E  T  K  N  A  E  L  E  E  R  L  S  T  L  Q  N  E  N  Q  M  L  R  H  :  I  L  K  N  T  T  A  G  A  Q  E  G  R  K  *  T  Y  D  R  S  Y  V  D  M  S  A  F  L  F  R  S  Y  V  G  T  E  E  K  F  S  S  G  F  E  N  A  C  *  F  R  V  D  C  S  D  L  M  H  C  I  L  A  T  L  N  R  C  R  L  Y  I  I  S  R  E  *  R  I  V  A  K  L  F  L  K  S  P  A  F  G  K  L  H  G  L  I  L  D  D  I  C  Y  N  Y  L  *  P  L  L  A  F  P  S  E  L  K  S  L  L  K  T  K  S  M  Y  *  *  D  S  V  *  K  N  L  C  N  *  K  P  I  R  Y  I  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2633" stop="2735"/>
                    <exon start="2890" stop="3067"/>
                    <exon start="3200" stop="3356"/>
                    <exon start="5682" stop="5726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRDGVSAAGQAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRHILKNTTAGAQEGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2578" e_stop="2735"/>
            <exon e_start="2890" e_stop="3067"/>
            <exon e_start="3200" e_stop="3356"/>
            <exon e_start="3458" e_stop="3464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.876" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2578" e_stop="2735" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2890" e_stop="3067" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="3200" e_stop="3356" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.876">
            <gDNA_intron_boundary i_start="3357" i_stop="3457" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3458" e_stop="3464" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2578" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2605" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="3458" stop="3464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2615" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="3458" stop="3462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG : GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG : ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT : ATACTTC</gDNA_template>
            <first_frame> E  *  N  T  K  L  Y  F  S  L  N  L  V  F  F  S  S  V  E  K  N  A  R  A  S  D  E  F  Y  C  R  *  F  T  T  F  K  *  *  E  I  I  *  F  S  F  T  S  *  T  Q  R  R :   Y  G  E  *  *  *  D  Q  K  S  A  G  D  G  R  R  S  D  G  D  N  V  S  F  W  K  R  W  S  I  G  R  R  S  S  S  T  I  S  W  D  S  K  E  E  R  K  K  P  S  *  Q  R  K  Q  K  V  K  K  :  I  V  E  K  *  S  I  S  T  T  S  K  G  E  E  E  S  I  F  D  R  S  G  S  K  G  E  G  I  G  N  K  E  C  R  T  *  R  E  V  V  Y  F  A  K  *  E  P  N  A  *  T   : Y  T   </first_frame>
            <second_frame>  N  K  I  R  N  C  T  F  P  L  I  *  C  F  F  Q  V  *  R  K  M  Q  E  Q  A  T  S  S  I  A  A  S  S  L  P  S  S  S  E  R  S  S  S  S  A  L  H  H  E  L  K  E   : G  M  E  S  D  D  E  I  R  R  V  P  E  M  G  G  E  A  T  G  T  T  S  A  S  G  R  D  G  V  S  A  A  G  Q  A  Q  P  S  A  G  T  Q  R  K  R  G  R  S  P  A  D  K  E  N  K  R  L  K  R :   L  L  R  N  R  V  S  A  Q  Q  A  R  E  R  K  K  A  Y  L  I  D  L  E  A  R  V  K  E  L  E  T  K  N  A  E  L  E  E  R  L  S  T  L  Q  N  E  N  Q  M  L  R  H  :  I  L  </second_frame>
            <third_frame>   I  K  Y  E  T  V  L  F  P  *  F  S  V  F  F  K  C  R  E  K  C  K  S  K  R  R  V  L  L  P  L  V  H  Y  L  Q  V  V  R  D  H  L  V  Q  L  Y  I  M  N  S  K  K  :  V  W  R  V  M  M  R  S  E  E  C  R  R  W  A  E  K  R  R  G  Q  R  Q  L  L  E  E  M  E  Y  R  P  P  V  K  L  N  H  Q  L  G  L  K  G  R  E  E  E  A  Q  L  T  K  K  T  K  G  *  K   : D  C  *  E  I  E  Y  Q  H  N  K  Q  G  R  G  R  K  H  I  *  *  I  W  K  Q  G  *  R  N  W  K  Q  R  M  Q  N  L  K  R  G  C  L  L  C  K  M  R  T  K  C  L  D  I :   Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2633" stop="2735"/>
                    <exon start="2890" stop="3067"/>
                    <exon start="3200" stop="3356"/>
                    <exon start="3458" stop="3463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRDGVSAAGQAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRHIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="42234" PGL_stop="42688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42234" e_stop="42688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="42234" e_stop="42688" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42234" stop="42653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42391" stop="42688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTGCTATGCTTATGCTATTATAAGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATATGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAAAATTCAAATCAACAAATTTTTCTACACAAAATAGGGAAAGAGAATGAACTAGAACAAAGCGAATGTTTTTCATTAATAGTCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAATCACAACATTACGAAGTGAACAACAGAAGCATTGAAGACTACTAGTGAAACTTGCAAACAGAACAAAGACACTTAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTATAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCAACTGACTCTTA</gDNA_template>
            <first_frame> P  S  A  M  L  M  L  L  *  D  I  G  E  *  L  *  T  H  N  F  H  P  L  G  C  S  L  S  L  Y  I  *  E  I  Y  K  K  K  T  R  F  Q  K  K  F  K  S  T  N  F  S  T  Q  N  R  E  R  E  *  T  R  T  K  R  M  F  F  I  N  S  R  Y  M  G  I  H  Q  I  G  S  L  H  T  H  R  P  A  T  Q  L  I  T  T  L  R  S  E  Q  Q  K  H  *  R  L  L  V  K  L  A  N  R  T  K  T  L  S  I  G  V  D  L  H  *  T  K  K  K  K  K  H  T  T  L  R  L  *  T  L  I  *  T  F  L  N  S  K  E  S  T  D  S   </first_frame>
            <second_frame>  L  L  L  C  L  C  Y  Y  K  I  *  E  S  D  C  K  H  T  T  S  T  L  L  A  V  V  *  A  C  I  Y  E  K  F  T  R  K  K  R  D  F  K  K  N  S  N  Q  Q  I  F  L  H  K  I  G  K  E  N  E  L  E  Q  S  E  C  F  S  L  I  V  V  T  W  E  Y  I  K  *  E  A  Y  T  H  I  D  Q  P  H  N  *  S  Q  H  Y  E  V  N  N  R  S  I  E  D  Y  *  *  N  L  Q  T  E  Q  R  H  L  A  *  E  *  I  S  T  K  Q  R  K  R  R  N  T  L  L  C  V  Y  R  H  L  F  K  P  S  *  T  P  K  S  Q  L  T  L  </second_frame>
            <third_frame>   F  C  Y  A  Y  A  I  I  R  Y  R  R  V  T  V  N  T  Q  L  P  P  S  W  L  *  F  E  L  V  Y  M  R  N  L  Q  E  K  N  E  I  S  K  K  I  Q  I  N  K  F  F  Y  T  K  *  G  K  R  M  N  *  N  K  A  N  V  F  H  *  *  S  L  H  G  N  T  S  N  R  K  L  T  H  T  *  T  S  H  T  T  N  H  N  I  T  K  *  T  T  E  A  L  K  T  T  S  E  T  C  K  Q  N  K  D  T  *  H  R  S  R  S  P  L  N  K  E  K  E  E  T  H  Y  F  A  S  I  D  T  Y  L  N  L  L  K  L  Q  R  V  N  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42787" PGL_stop="43454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42787" e_stop="43454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="42787" e_stop="43454" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42787" stop="43454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42787" stop="43288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42787" stop="43012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGCTTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCTTTCTTATTATCAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGAAACCCCATCCACTAGATTTAAGTGTGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGACCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCATCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCAATACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCATCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</gDNA_template>
            <first_frame> *  G  V  V  E  C  V  V  P  P  A  P  E  K  Q  *  A  H  A  L  K  K  H  E  A  F  A  D  V  H  A  F  H  F  Q  H  L  E  F  F  D  *  F  E  K  V  F  Q  W  *  L  D  L  Y  L  P  L  L  A  K  *  T  K  K  L  L  F  I  G  I  G  G  P  *  P  F  L  I  I  S  K  I  G  C  L  G  S  V  T  W  F  K  P  G  F  S  *  I  *  N  P  I  H  *  I  *  V  C  *  I  I  V  L  S  S  Y  A  F  E  Y  S  R  P  P  F  F  W  R  V  S  P  R  G  L  I  P  D  H  S  L  R  N  R  T  Q  *  Y  S  A  H  Q  R  R  E  Y  P  L  Y  Y  K  T  G  P  P  H  P  F  L  R  D  G  A  I  V  T  R  Q  L  N  T  D  Q  Y  K  T  M  *  S  V  L  V  Y  V  P  H  W  H  *  P  N  A  L  P  T  H  L  *  L  A  Y  L  Y  P  A  T  *  W  K  S  P  R  P   </first_frame>
            <second_frame>  K  E  L  L  N  A  L  F  H  Q  L  R  K  N  N  R  H  M  L  *  K  S  M  K  R  L  L  T  F  T  P  F  I  F  N  I  *  N  S  L  I  N  L  R  K  S  F  S  G  S  L  I  Y  I  S  L  C  L  P  N  R  Q  R  S  F  Y  L  *  A  L  E  A  L  N  P  F  L  L  S  V  R  *  V  V  L  V  P  *  H  G  S  N  L  A  F  H  E  Y  E  T  P  S  T  R  F  K  C  A  E  *  L  S  F  P  R  T  H  L  S  T  Q  D  P  L  S  F  G  G  Y  R  H  V  A  *  S  R  I  T  P  *  G  I  G  H  N  N  I  A  H  I  R  E  E  S  T  P  F  I  I  R  Q  A  P  R  I  L  S  *  E  M  E  Q  S  S  L  D  S  S  I  L  T  S  T  K  P  C  D  L  S  S  F  T  Y  P  T  G  T  S  L  T  P  C  L  L  I  F  N  W  L  I  C  T  Q  L  H  D  G  S  P  L  G  Q  </second_frame>
            <third_frame>   R  S  C  *  M  R  C  S  T  S  S  G  K  T  I  G  T  C  S  K  K  A  *  S  V  C  *  R  S  R  L  S  F  S  T  F  R  I  L  *  L  I  *  E  S  L  S  V  V  A  *  F  I  S  P  F  A  C  Q  I  D  K  E  A  S  I  Y  R  H  W  R  P  L  T  L  S  Y  Y  Q  *  D  R  L  S  W  F  R  N  M  V  Q  T  W  L  F  M  N  M  K  P  H  P  L  D  L  S  V  L  N  N  C  P  F  L  V  R  I  *  V  L  K  T  P  F  L  L  A  G  I  A  T  W  L  N  P  G  S  L  L  K  E  *  D  T  I  I  *  R  T  S  E  K  R  V  P  P  L  L  *  D  R  P  P  A  S  F  L  K  R  W  S  N  R  H  S  T  A  Q  Y  *  P  V  Q  N  H  V  I  C  P  R  L  R  T  P  L  A  L  A  *  R  P  A  Y  S  S  L  T  G  L  F  V  P  S  Y  M  M  E  V  P  S  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44092" PGL_stop="44722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44092" e_stop="44722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="44092" e_stop="44722" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44092" stop="44722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAAATACCTAATAACTCATATCATATGATACTTACCATATAAAATTACTACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGACTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATTCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAGTTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTAATGAAATGGAATAGAAATACCTAATATCGTATGAGTCTTACTATATAAAGAATTAACACCTAACAATATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAAGAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTGTTGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGTGTCATA</gDNA_template>
            <first_frame> Y  K  I  P  N  N  S  Y  H  M  I  L  T  I  *  N  Y  Y  L  T  I  N  I  I  I  Y  L  I  *  G  S  *  S  D  L  V  V  A  A  S  K  H  D  M  L  T  I  Y  P  *  F  P  Y  H  L  F  F  C  F  Y  L  S  *  P  G  S  F  F  T  H  S  F  S  S  F  V  *  L  S  V  G  N  S  I  *  F  T  L  F  L  L  A  R  I  V  Y  F  F  L  F  K  A  Y  P  H  *  *  N  G  I  E  I  P  N  I  V  *  V  L  L  Y  K  E  L  T  P  N  N  I  Y  L  S  Y  T  I  K  Y  L  I  T  H  Y  D  Y  L  Q  E  K  G  M  Y  K  S  N  K  R  P  A  C  *  P  N  C  V  T  K  A  T  P  C  W  W  L  I  G  V  G  P  I  H  L  C  Q  F  E  L  G  G  S  F  V  R  V  E  N  L  S  R  Y  S  G  F  L  S  V  D  P  M  C  H  </first_frame>
            <second_frame>  I  K  Y  L  I  T  H  I  I  *  Y  L  P  Y  K  I  T  T  *  Q  *  I  L  S  Y  T  *  S  K  V  H  N  Q  T  *  W  *  Q  L  P  S  M  I  C  *  L  Y  I  P  N  S  L  I  T  C  S  S  A  F  I  F  L  S  Q  E  A  F  L  P  I  P  S  H  P  L  S  D  F  L  *  V  T  L  S  S  S  L  S  F  F  S  L  V  S  Y  T  F  S  C  S  K  R  I  R  T  N  E  M  E  *  K  Y  L  I  S  Y  E  S  Y  Y  I  K  N  *  H  L  T  I  Y  I  Y  H  I  L  *  N  T  *  *  H  I  M  I  T  C  K  K  R  E  C  I  R  V  I  S  G  L  P  A  N  Q  T  A  *  P  K  R  L  L  V  G  G  *  *  V  L  V  R  F  T  Y  V  S  S  N  L  A  G  R  S  F  V  W  R  I  S  L  V  T  Q  D  F  S  Q  L  I  R  C  V  I </second_frame>
            <third_frame>   *  N  T  *  *  L  I  S  Y  D  T  Y  H  I  K  L  L  P  N  N  K  Y  Y  H  I  L  D  L  R  F  I  I  R  L  S  G  S  S  F  Q  A  *  Y  V  N  Y  I  S  L  I  P  L  S  L  V  L  L  L  L  S  F  L  A  R  K  L  F  Y  P  F  L  L  I  L  C  L  T  F  C  R  *  L  Y  L  V  H  S  L  S  S  R  S  Y  R  I  L  F  L  V  Q  S  V  S  A  L  M  K  W  N  R  N  T  *  Y  R  M  S  L  T  I  *  R  I  N  T  *  Q  Y  I  F  I  I  Y  Y  K  I  P  N  N  T  L  *  L  P  A  R  K  G  N  V  *  E  *  *  A  A  C  L  L  T  K  L  R  N  Q  S  D  S  L  L  V  V  D  R  C  W  S  D  S  P  M  S  V  R  T  W  R  V  V  R  S  C  G  E  S  L  S  L  L  R  I  S  L  S  *  S  D  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49130" PGL_stop="50480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49130" e_stop="50480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="49130" e_stop="50480" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49130" stop="49842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49130" stop="49725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49130" stop="49655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49201" stop="49880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49201" stop="49559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49719" stop="50480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49719" stop="50379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50122" stop="50452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  H  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  I  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  I  M  P  I  P  C  P  K  S  S  L  G  H  I  R  C  P  Y  F  *  L  M  I  T  R  P  Q  V  N  L  R  E  D  K  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  S  I  F  L  L  H  K  *  H  Q  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  R  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  F  T  D  Y  R  N  *  L  N  *  R  Y  L  G  S  I  I  P  E  M  C  Q  E  R  *  T  T  L  T  N  H  F  H  N  T  K  K  G  D  D  T  N  W  I  G  S  V  V  T  L  P  H  *  W  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  H  K  I  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  L  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  *  F  T  M  *  I  K  T  I  S  *  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  F  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  L  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  K  A  P  C  N  *  S  N  K  S  L  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  Q  K  L  P  S  F  F  F  T  N  N  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  L  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  Q  T  I  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  N  A  K  Q  P  L  L  T  I  F  I  T  R  R  K  E  M  I  Q  T  G  L  E  V  *  S  L  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  F  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  N  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  P  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  S  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  H  N  A  H  T  L  S  E  K  Q  S  W  A  H  P  L  P  V  F  L  I  D  D  N  P  T  S  S  Q  S  *  R  R  Q  K  H  L  V  T  D  R  T  S  H  *  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  K  N  F  H  L  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  *  G  E  Y  P  V  *  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  H  R  L  S  K  L  T  *  L  K  V  L  G  *  Y  H  P  *  D  V  P  R  T  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  K  L  D  W  K  C  S  H  S  P  T  L  M  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  T  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  V  I  H  N  V  N  *  D  H  *  L  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49857" stop="50102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGLRSMQKSISLSGGIPGRSAGNTSKNSQTIETDLIEGTWVVSSLRCAKNAKQPLLTIFITRRKEMIQTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49326" stop="49523"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50959" PGL_stop="51594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50959" e_stop="51594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="50959" e_stop="51594" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50959" stop="51594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAATAACCGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTACAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTTTATAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAATACTGTAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAGTGAGGCATCCATGCGGGGAGACACAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCGCTAAGGTAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTCCCCATCCTCCCCTTCT</gDNA_template>
            <first_frame> L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  N  N  R  H  P  T  F  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  T  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  Y  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  L  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  Y  C  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  N  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  R  H  S  S  R  M  L  Y  L  W  S  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  V  S  K  N  L  I  D  H  L  *  G  R  L  G  W  *  F  L  I  L  Y  L  F  I  S  P  S  S  P  S </first_frame>
            <second_frame>  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  I  T  D  I  L  P  F  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  Q  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  F  Y  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  N  T  V  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  S  E  A  S  M  R  G  D  T  V  A  A  C  C  T  S  G  A  *  G  A  G  V  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  S  S  F  C  T  C  S  F  P  H  P  P  L   </second_frame>
            <third_frame>   G  W  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  S  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  Y  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  I  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  F  I  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  I  L  *  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  *  L  *  A  L  *  S  D  E  E  M  C  L  F  P  V  R  H  P  C  G  E  T  Q  *  P  H  V  V  P  L  E  P  E  V  L  V  *  K  T  L  E  V  S  G  L  D  Q  I  T  R  *  G  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  V  L  V  H  F  P  I  L  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51651" PGL_stop="51099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51651" e_stop="51099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="51651" e_stop="51099" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51651" stop="51099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAGGCCCATCTGGTACTAGGGCGGTGACTCTTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGTCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTACAGTATTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTATAAAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  S  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  I  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  T  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  *  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  I  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  L  P  P  T  E  E  V  V  R  E  G  E  D  G  E  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  *  R  *  S  I  R  F  L  L  T  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  C  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  L  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  Y  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  K  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  Y  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   Q  A  H  L  V  L  G  R  *  L  F  H  R  L  R  K  *  *  E  K  G  R  M  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  P  *  R  V  I  *  S  R  P  D  T  S  S  V  F  Y  T  S  T  S  G  S  R  G  T  T  C  G  Y  C  V  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  Y  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  Y  S  I  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  I  K  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  M  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51606" stop="51232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSKRRGGWGNEQVQNEELPPQPTLEMINQVLAYLSGLSDQGQTPPVFSTPAPQAPEVQHAATVSPRMDASLEIGTFPRLTTGPIITNDQHELFSKFLKLKPTVFKGAESEDAYDFLVDCHELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="81019" PGL_stop="81664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81019" e_stop="81664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="81019" e_stop="81664" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81019" stop="81612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81019" stop="81612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81236" stop="81664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTATACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAATGCTTTTGAGAGGTTCGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTCTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTAAGGAATGTCTCAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  Y  T  R  W  N  S  T  Y  L  M  L  D  T  A  E  K  F  E  N  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  K  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  *  L  R  E  R  K  K  N  S  R  N  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  C  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  *  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  N  M  E  K  V  P  K  V  N  H  L  H  L  T  H  L  I  L  L  L  V  V  F  </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  I  L  G  G  I  P  P  I  *  C  *  T  Q  Q  K  S  L  R  M  L  L  R  G  S  I  F  M  M  V  I  L  I  L  F  L  L  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  K  E  C  L  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  R  Y  M  *  T  *  C  L  F  E  I  M  Y  S  K  *  *  P  *  F  E  *  N  D  F  E  K  E  R  K  I  Q  E  I  L  G  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  V  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  *  D  I  C  K  *  I  W  K  R  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  C  *  W  Y  F </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  Y  *  V  E  F  H  L  F  D  V  R  H  S  R  K  V  *  E  C  F  *  E  V  R  S  L  *  W  *  F  *  F  F  S  C  S  D  V  C  E  D  G  S  I  A  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  S  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  D  I  C  E  L  D  A  Y  L  K  L  C  I  A  S  D  D  L  D  L  S  K  M  T  S  R  K  K  E  K  F  K  K  Y  W  G  T  P  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  M  K  V  E  A  Y  L  R  D  L  F  E  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  A  S  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81150" stop="81662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSCSDVCEDGSIAGSIQYEDWANVRNVSKFLEKFYELTLKVSGSRYVTCNVHFEDICELDAYLKLCIASDDLDLSKMTSRKKEKFKKYWGTPEKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNMKVEAYLRDLFEIYVSKYGKGSKSQPSSSDSSDSSASGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="81978" PGL_stop="82562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81978" e_stop="82061"/>
            <exon e_start="82154" e_stop="82211"/>
            <exon e_start="82303" e_stop="82562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="0.983"/>
          <exon-only e_score="0.862"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81978" e_stop="82061" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.966">
            <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="82154" e_stop="82211" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.862">
            <gDNA_exon_boundary e_start="82303" e_stop="82562" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81978" stop="82061"/>
              <exon start="82154" stop="82211"/>
              <exon start="82303" stop="82562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81979" stop="82061"/>
              <exon start="82154" stop="82211"/>
              <exon start="82303" stop="82562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81988" stop="82061"/>
              <exon start="82154" stop="82211"/>
              <exon start="82303" stop="82562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG : AGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG : GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</gDNA_template>
            <first_frame> F  V  S  K  I  G  L  D  K  K  P  S  L  F  V  L  K  K  V  W  S  F  L  K  K  L  N  L  :  R  W  Q  I  V  E  E  T  L  P  L  L  I  Y  D  *  L  A  S   : G  P  R  V  K  T  M  K  K  *  F  C  W  H  V  T  L  E  S  *  K  Q  S  H  G  R  K  S  R  N  S  L  L  L  F  V  I  V  D  I  *  I  E  S  N  L  M  E  E  D  K  K  F  K  I  H  C  L  L  L  I  I  V  Y  Y  E  L  M  K  D  F  I  V  T  C  *  I  V  I  M  L  Y  L  *  R  H  * </first_frame>
            <second_frame>  L  C  P  R  L  A  *  T  R  N  Q  A  Y  L  C  *  R  K  F  G  V  S  *  K  N  *  T  * :   D  G  K  *  W  K  K  L  F  H  C  *  S  M  I  D  L  Q  A  :  V  Q  G  S  R  Q  *  R  N  N  F  V  G  T  *  H  L  K  V  E  S  N  L  M  E  E  S  Q  E  T  H  Y  C  C  L  L  L  L  T  F  E  L  K  V  I  S  W  K  K  T  R  S  L  K  Y  I  V  C  C  L  L  L  F  I  M  S  S  *  K  T  L  L  L  H  V  R  L  L  L  C  C  I  C  E  D  I   </second_frame>
            <third_frame>   C  V  Q  D  W  L  R  Q  E  T  K  P  I  C  V  E  E  S  L  E  F  L  E  K  I  E  L   : E  M  A  N  S  G  R  N  S  S  I  V  D  L  *  L  T  C  K  R :   S  K  G  Q  D  N  E  E  I  I  L  L  A  R  D  T  *  K  L  K  A  I  S  W  K  K  V  K  K  L  I  I  V  V  C  Y  C  *  H  L  N  *  K  *  S  H  G  R  R  Q  E  V  *  N  T  L  F  V  A  Y  Y  C  L  L  *  A  H  E  R  L  Y  C  Y  M  L  D  C  Y  Y  V  V  F  V  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="86426" PGL_stop="94734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86426" e_stop="86651"/>
            <exon e_start="88095" e_stop="88290"/>
            <exon e_start="88400" e_stop="88581"/>
            <exon e_start="89293" e_stop="89410"/>
            <exon e_start="89508" e_stop="89697"/>
            <exon e_start="90070" e_stop="90336"/>
            <exon e_start="90479" e_stop="90824"/>
            <exon e_start="91232" e_stop="91369"/>
            <exon e_start="91458" e_stop="91583"/>
            <exon e_start="91796" e_stop="92008"/>
            <exon e_start="92114" e_stop="92381"/>
            <exon e_start="92775" e_stop="92971"/>
            <exon e_start="93085" e_stop="93435"/>
            <exon e_start="93890" e_stop="94734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.959"/>
          <exon-intron don_prob="0.889" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.442" e_score="0.989"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.670" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86426" e_stop="86651" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="88095" e_stop="88290" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88400" e_stop="88581" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="0.986">
            <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89293" e_stop="89410" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.987">
            <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97"/>
          </intron>
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          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG : CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG : GGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA : GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG : TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAAT : GGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGTTTGCCTTGTCCTGGCTCCTCGATCAGTTTCCAAAATGGTCACCAGTCAATCGTGAGACATTCCTTGACAGGCTAGCTTTGAG : ACATGATAGAGAAGGGGAGCCTTCGCAGCTTGCACCTGTTGACATCTTTGTCAGTACAGTGGATCCTTTGAAAGAACCTCCTCTCATTACTGCAAACACAGTGTTGTCCATCCTTGCTGTTGATTATCCTGTGGACAAGGTCTCATGCTATGTGTCAGATGATGGTTCAGCAATGCTAACATTTGAAGCCCTTTCTGAGACTGCAGAGTTTGCAAGGAGATGGGTTCCCTTCTGCAAGAAATTCAGCATTGAGCCTCGGGCCCCTGAATTTTATTTTGCTCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG : AGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCGCAAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAG : GTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG : ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT : ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG : GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG : ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG : ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTTGTTATCTT</gDNA_template>
            <first_frame> A  L  E  Y  Q  R  K  K  V  K  *  R  S  D  V  Q  L  R  K  M  H  C  F  F  T  L  A  *  P  L  S  R  L  I  K  L  C  F  K  V  P  S  V  S  L  R  R  R  N  G  G  R  W  W  N  G  S  W  I  S  Q  A  *  *  V  G  *  D  S  T  *  F  *  *  W   : A  E  T  L  E  A  S  Q  *  P  N  M  P  N  L  W  *  Y  C  W  F  D  C  *  W  *  C  I  H  C  L  *  *  V  C  L  S  C  L  P  G  L  L  *  V  R  A  *  R  W  K  S  I  M  S  S  M  Q  D  Q  I  Q  E  V  Q  G :   E  S  T  S  G  W  R  *  *  R  G  R  C  *  *  Y  R  Q  *  V  Q  L  C  S  R  K  Q  Q  G  Q  T  A  M  A  G  *  *  C  W  S  L  F  I  L  *  T  R  I  S  A  T  D  S  S  S  Y  R  W  P  A   : S  V  W  *  F  S  *  C  N  N  *  Y  T  I  C  K  K  Y  V  R  T  L  R  P  W  R  Q  A  F  I  P  V  L  C  *  S  K  T  A  C :   S  C  K  N  C  G  P  L  K  G  L  E  F  L  W  A  W  K  C  *  L  E  G  E  S  R  G  L  E  T  E  T  G  E  K  S  G  A  F  D  K  Q  I  F  *  R  E  R  R  G  H  *  R  D  R  V  E  W  R  R  A  T  N  :  G  *  R  C  S  P  A  Y  E  P  C  G  A  Y  S  F  I  P  P  Y  P  I  S  G  C  Y  H  F  A  V  D  H  L  G  I  F  H  A  I  P  S  N  S  S  S  E  *  C  I  S  S  V  A  S  I  S  Y  L  *  G  L  V  C  L  V  L  A  P  R  S  V  S  K  M  V  T  S  Q  S  *  D  I  P  *  Q  A  S  F  E  :  T  *  *  R  R  G  A  F  A  A  C  T  C  *  H  L  C  Q  Y  S  G  S  F  E  R  T  S  S  H  Y  C  K  H  S  V  V  H  P  C  C  *  L  S  C  G  Q  G  L  M  L  C  V  R  *  W  F  S  N  A  N  I  *  S  P  F  *  D  C  R  V  C  K  E  M  G  S  L  L  Q  E  I  Q  H  *  A  S  G  P  *  I  L  F  C  S  K  D  R  L  F  E  G  Q  G  S  A  F  F  C  E  R  A  Q  G  N  E   : E  G  V  *  R  I  *  N  T  N  Q  C  S  C  C  K  S  A  K  N  A  *  R  R  L  D  N  A  R  W  N  S  L  A  W  K  *  P  *  G  S  S  R  N  D  P   : G  L  F  G  A  Q  R  G  P  *  Y  *  W  K  *  T  S  S  S  G  V  C  F  S  *  E  A  T  R  F  S  T  P  Q  E  S  W  S  Y  E  C  F   : D  S  C  F  C  S  S  Y  Q  W  S  I  S  F  E  C  R  L  *  S  L  L  *  Q  Q  Q  S  T  *  R  S  N  V  F  P  H  G  S  C  S  W  K  E  D  M  L  C  S  V  P  S  A  I  *  W  H  *  L  A  R  S  I  C  *  P  K  H  C  V  L  *   : Y  Q  L  E  R  V  G  W  P  S  G  S  Y  V  C  G  N  W  V  L  F  *  Q  A  G  P  L  R  V  *  S  C  I  N  *  G  *  F  G  A  K  H  H  C  *  E  L  L  W  W  V  K  E  E  G  K  E  W  K  Q  E  I  H  *  *  E  E  G  S  K  K  N  R  I  H  C  P  N  F  Q  Y  G  R  H  *  R  R  R  R  R :   I  *  *  G  E  V  T  A  Y  V  T  E  E  L  G  E  A  I  W  S  I  T  S  V  Y  C  C  H  I  Y  G  T  R  R  H  S  C  I  H  *  S  C  I  S  F  E  R  S  N  S  C  Y  *  L  W  L  R  G  Q  D  *  M  G  K  R   : D  W  V  D  I  W  V  C  H  *  R  Y  F  D  W  V  *  D  A  C  T  R  M  V  F  P  L  L  H  A  S  S  T  S  V  *  R  V  C  S  Y  Q  S  F  *  S  F  K  P  G  A  P  V  G  F  G  F  C  *  N  P  V  E  *  A  L  P  N  M  V  W  L  Q  W  Q  I  D  A  S  G  E  I  S  I  Y  *  Y  N  R  L  S  S  H  I  F  T  L  A  C  L  L  Y  A  S  C  H  L  S  S  D  R  Q  I  Y  H  S  *   : D  K  Q  L  C  W  H  V  V  H  S  T  L  S  F  H  F  R  N  W  Y  I  G  A  *  V  E  W  C  E  Y  *  R  L  V  E  K  *  T  V  L  G  H  W  W  Y  I  G  S  L  V  C  S  F  P  R  S  P  E  S  A  C  W  D  *  Y  Q  L  Y  S  H  I  K  G  K  R  *  G  W  R  F  C  *  A  L  C  V  Q  M  D  N  S  P  Y  S  S  Y  S  N  P  Y  R  E  S  G  R  N  C  G  R  C  F  V  C  H  K  Q  W  I  S  I  M  G  S  S  I  R  E  V  V  L  C  H  L  G  H  C  P  L  V  P  F  P  Q  R  F  V  G  T  S  E  S  Y  S  Y  H  C  H  C  L  G  C  S  P  C  I  H  I  L  I  A  L  G  A  Y  R  P  L  H  I  R  R  V  K  D  C  C  K  R  S  M  W  Y  Q  L  L  V  R  S  L  F  I  L  R  *  D  V  C  L  S  I  L  M  L  Y  I  R  K  L  C  R  F  G  *  V  L  *  S  F  C  T  N  V  V  S  R  K  E  C  D  A  *  K  T  S  K  L  M  D  L  R  L  F  V  V  Y  L  L  P  Y  L  T  C  S  C  K  N  C  D  L  *  C  E  E  F  *  I  *  F  C  Y  L </first_frame>
            <second_frame>  H  *  N  I  R  E  R  R  *  S  R  G  V  M  F  S  *  G  K  C  T  V  S  S  H  W  L  N  P  Y  Q  D  *  L  S  C  V  L  R  Y  P  L  F  L  *  G  E  E  M  E  A  G  G  G  M  V  A  G  S  H  K  R  N  E  L  V  R  I  R  H  D  S  D  S  G  :  P  K  P  L  K  P  L  N  S  Q  I  C  Q  I  C  G  D  T  V  G  S  T  A  S  G  D  V  F  I  A  C  N  E  C  A  F  P  V  C  R  A  C  Y  E  Y  E  R  K  D  G  N  Q  S  C  P  Q  C  K  T  R  Y  K  R  F  K   : G  S  P  R  V  D  G  D  D  D  E  E  D  V  D  D  I  D  N  E  F  N  Y  A  Q  G  N  S  K  A  R  Q  Q  W  Q  G  D  D  A  G  L  S  S  S  S  R  H  E  S  Q  Q  P  I  P  L  L  T  D  G  Q  P  :  V  S  G  D  F  P  S  A  T  T  D  T  Q  S  V  R  S  M  S  G  P  L  G  P  G  D  K  H  S  S  L  S  Y  V  D  P  R  Q  P   : V  P  V  R  I  V  D  P  S  K  D  L  N  S  Y  G  L  G  S  V  D  W  K  E  R  V  E  G  W  K  L  K  Q  E  K  N  L  V  H  S  T  N  R  Y  S  E  G  K  G  G  D  I  E  G  T  G  S  N  G  E  E  L  Q  M :   A  D  D  A  R  Q  P  M  S  R  V  V  P  I  P  S  S  H  L  T  P  Y  R  V  V  I  I  L  R  L  I  I  L  G  F  F  M  Q  Y  R  L  T  H  P  V  N  D  A  Y  P  L  W  L  V  S  V  I  C  E  V  W  F  A  L  S  W  L  L  D  Q  F  P  K  W  S  P  V  N  R  E  T  F  L  D  R  L  A  L  R :   H  D  R  E  G  E  P  S  Q  L  A  P  V  D  I  F  V  S  T  V  D  P  L  K  E  P  P  L  I  T  A  N  T  V  L  S  I  L  A  V  D  Y  P  V  D  K  V  S  C  Y  V  S  D  D  G  S  A  M  L  T  F  E  A  L  S  E  T  A  E  F  A  R  R  W  V  P  F  C  K  K  F  S  I  E  P  R  A  P  E  F  Y  F  A  Q  K  I  D  Y  L  K  D  K  V  Q  P  S  F  V  K  E  R  R  A  M  K  :  R  E  Y  E  E  F  K  I  R  I  N  A  L  V  A  K  A  Q  K  M  P  E  E  G  W  T  M  Q  D  G  T  A  W  P  G  N  N  P  R  D  H  P  G  M  I  Q  :  V  F  L  G  H  S  G  G  L  D  T  D  G  N  E  L  P  R  L  V  Y  V  S  R  E  K  R  P  G  F  Q  H  H  K  K  A  G  A  M  N  A  L  :  I  R  V  S  A  V  L  T  N  G  A  Y  L  L  N  V  D  C  D  H  Y  F  N  N  S  K  A  L  K  E  A  M  C  F  L  M  D  P  V  L  G  K  K  T  C  Y  V  Q  F  P  Q  R  F  D  G  I  D  L  H  D  R  Y  A  N  R  N  I  V  F  F  D  :  I  N  L  K  G  L  D  G  L  Q  G  P  M  Y  V  G  T  G  C  C  F  N  R  Q  A  L  Y  G  Y  D  P  V  L  T  E  A  D  L  E  P  N  I  I  V  K  S  C  C  G  G  S  R  K  K  G  R  S  G  N  K  K  Y  I  D  K  K  R  A  V  K  R  T  E  S  T  V  P  I  F  N  M  E  D  I  E  E  G  V  E   : G  Y  D  E  E  K  S  L  L  M  S  Q  R  S  L  E  K  R  F  G  Q  S  P  V  F  I  A  A  T  F  M  E  Q  G  G  I  P  A  S  T  N  P  A  S  L  L  K  E  A  I  H  V  I  S  C  G  Y  E  D  K  T  E  W  G  K  E  :  I  G  W  I  Y  G  S  V  T  E  D  I  L  T  G  F  K  M  H  A  R  G  W  Y  S  L  Y  C  M  P  P  R  P  A  F  K  G  S  A  P  I  N  L  S  D  R  L  N  Q  V  L  R  W  A  L  G  S  V  E  I  L  L  S  R  H  C  P  I  W  Y  G  Y  S  G  R  L  M  L  L  E  R  L  A  Y  I  N  T  I  V  Y  P  L  T  S  L  P  L  L  A  Y  C  T  L  P  A  I  C  L  L  T  G  K  F  I  I  P  E  :  I  S  N  Y  A  G  M  W  F  I  L  L  F  L  S  I  F  A  T  G  I  L  E  L  R  W  S  G  V  S  I  E  D  W  W  R  N  E  Q  F  W  V  I  G  G  T  S  A  H  L  F  A  V  F  Q  G  L  L  K  V  L  A  G  I  D  T  N  F  T  V  T  S  K  A  N  D  E  D  G  D  F  A  E  L  Y  V  F  K  W  T  T  L  L  I  P  P  T  A  I  L  I  V  N  L  V  G  I  V  A  G  V  S  Y  A  I  N  S  G  Y  Q  S  W  G  P  L  F  G  K  L  F  F  A  I  W  V  I  V  H  L  Y  P  F  L  K  G  L  L  G  R  Q  N  R  T  P  T  I  V  I  V  W  A  V  L  L  A  S  I  F  S  L  L  W  V  R  I  D  P  F  T  S  D  A  S  K  T  A  A  R  G  Q  C  G  I  N  C  *  *  E  V  Y  L  F  *  G  K  M  F  A  Y  P  F  S  C  C  I  *  E  N  Y  A  G  S  V  K  S  C  S  H  F  V  P  M  L  *  V  G  R  S  V  M  H  E  R  H  Q  N  S  W  I  Y  A  F  L  L  Y  T  F  C  P  I  S  H  V  H  A  K  T  V  T  Y  D  V  K  N  F  K  F  N  F  V  I   </second_frame>
            <third_frame>   I  R  I  S  E  K  E  G  E  V  E  E  *  C  S  V  E  E  N  A  L  F  L  H  I  G  L  T  P  I  K  I  D  *  A  V  F  *  G  T  L  C  F  F  E  E  K  K  W  R  Q  V  V  E  W  *  L  D  L  T  S  V  M  S  W  L  G  F  D  M  I  L  I  V  G :   R  N  P  *  S  L  S  I  A  K  Y  A  K  F  V  V  I  L  L  V  R  L  L  V  V  M  Y  S  L  L  V  M  S  V  P  F  L  F  A  G  L  V  M  S  T  S  V  K  M  E  I  N  H  V  L  N  A  R  P  D  T  R  G  S  R  :  G  V  H  E  W  M  E  M  M  T  R  K  M  L  M  I  S  T  M  S  S  I  M  L  K  E  T  A  R  P  D  S  N  G  R  V  M  M  L  V  S  L  H  P  L  D  T  N  L  S  N  R  F  L  F  L  Q  M  A  S  Q :   C  L  V  I  F  L  V  Q  Q  L  I  H  N  L  *  E  V  C  Q  D  P  *  A  L  E  T  S  I  H  P  C  L  M  L  I  Q  D  S  L  :  F  L  *  E  L  W  T  P  Q  R  T  *  I  L  M  G  L  E  V  L  T  G  R  R  E  *  R  V  G  N  *  N  R  R  K  I  W  C  I  R  Q  T  D  I  L  K  G  K  A  G  T  L  K  G  Q  G  R  M  E  K  S  Y  K   : W  L  T  M  L  A  S  L  *  A  V  W  C  L  F  L  H  P  T  L  P  H  I  G  L  L  S  F  C  G  *  S  S  W  D  F  S  C  N  T  V  *  L  I  Q  *  M  M  H  I  L  C  G  *  Y  Q  L  F  V  R  F  G  L  P  C  P  G  S  S  I  S  F  Q  N  G  H  Q  S  I  V  R  H  S  L  T  G  *  L  *   : D  M  I  E  K  G  S  L  R  S  L  H  L  L  T  S  L  S  V  Q  W  I  L  *  K  N  L  L  S  L  L  Q  T  Q  C  C  P  S  L  L  L  I  I  L  W  T  R  S  H  A  M  C  Q  M  M  V  Q  Q  C  *  H  L  K  P  F  L  R  L  Q  S  L  Q  G  D  G  F  P  S  A  R  N  S  A  L  S  L  G  P  L  N  F  I  L  L  K  R  *  I  I  *  R  T  R  F  S  L  L  L  *  K  S  A  G  Q  *  R :   G  S  M  K  N  L  K  Y  E  S  M  L  L  L  Q  K  R  K  K  C  L  K  K  V  G  Q  C  K  M  E  Q  L  G  L  E  I  T  L  G  I  I  Q  E  *  S  R :   S  F  W  G  T  A  G  A  L  I  L  M  E  M  N  F  L  V  W  C  M  F  L  V  R  S  D  Q  V  F  N  T  T  R  K  L  E  L  *  M  L  * :   F  V  F  L  Q  F  L  P  M  E  H  I  F  *  M  S  I  V  I  T  T  L  T  T  A  K  H  L  K  K  Q  C  V  S  S  W  I  L  F  L  E  R  R  H  A  M  F  S  S  L  S  D  L  M  A  L  T  C  T  I  D  M  L  T  E  T  L  C  S  L  I :   S  T  *  K  G  W  M  A  F  R  V  L  C  M  W  E  L  G  V  V  L  T  G  R  P  F  T  G  M  I  L  Y  *  L  R  L  I  W  S  Q  T  S  L  L  R  A  V  V  V  G  Q  G  R  R  E  G  V  E  T  R  N  T  L  I  R  R  G  Q  *  K  E  Q  N  P  L  S  Q  F  S  I  W  K  T  L  K  K  A  *  K  :  D  M  M  R  R  S  H  C  L  C  H  R  G  A  W  R  S  D  L  V  N  H  Q  C  L  L  L  P  H  L  W  N  K  E  A  F  L  H  P  L  I  L  H  L  F  *  K  K  Q  F  M  L  L  A  V  A  T  R  T  R  L  N  G  E  K  R :   L  G  G  Y  M  G  L  S  L  K  I  F  *  L  G  L  R  C  M  H  E  D  G  I  P  S  I  A  C  L  L  D  Q  R  L  K  G  L  L  L  S  I  F  L  I  V  *  T  R  C  S  G  G  L  W  V  L  L  K  S  C  *  V  G  I  A  Q  Y  G  M  A  T  V  A  D  *  C  F  W  R  D  *  H  I  L  I  Q  S  S  I  L  S  H  L  Y  P  C  L  L  T  V  R  F  L  P  S  V  F  *  P  A  N  L  S  F  L  R :   *  A  T  M  L  A  C  G  S  F  Y  S  F  F  P  F  S  Q  L  V  Y  W  S  L  G  G  V  V  *  V  L  K  T  G  G  E  M  N  S  F  G  S  L  V  V  H  R  L  T  C  L  Q  F  S  K  V  S  *  K  C  L  L  G  L  I  P  T  L  Q  S  H  Q  R  Q  T  M  R  M  E  I  L  L  S  F  M  C  S  N  G  Q  L  S  L  F  L  L  Q  Q  S  L  S  *  I  W  *  E  L  W  Q  V  F  R  M  P  *  T  V  D  I  N  H  G  V  L  Y  S  G  S  C  S  L  P  F  G  S  L  S  T  C  T  L  S  S  K  V  C  W  D  V  R  I  V  L  L  P  L  S  L  S  G  L  F  S  L  H  P  Y  S  H  C  F  G  C  V  S  T  P  S  H  Q  T  R  Q  R  L  L  Q  E  V  N  V  V  S  T  V  S  E  K  F  I  Y  F  K  V  R  C  L  L  I  H  S  H  V  V  Y  K  K  T  M  P  V  R  L  S  P  V  V  I  L  Y  Q  C  C  K  S  E  G  V  *  C  M  K  D  I  K  T  H  G  F  T  P  F  C  C  I  P  F  A  L  S  H  M  F  M  Q  K  L  *  L  M  M  *  R  I  L  N  L  I  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86562" stop="86651"/>
                    <exon start="88095" stop="88290"/>
                    <exon start="88400" stop="88581"/>
                    <exon start="89293" stop="89410"/>
                    <exon start="89508" stop="89697"/>
                    <exon start="90070" stop="90336"/>
                    <exon start="90479" stop="90824"/>
                    <exon start="91232" stop="91369"/>
                    <exon start="91458" stop="91583"/>
                    <exon start="91796" stop="92008"/>
                    <exon start="92114" stop="92381"/>
                    <exon start="92775" stop="92971"/>
                    <exon start="93085" stop="93435"/>
                    <exon start="93890" stop="94477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3267</number_coding_nucleotides>
                  <number_encoded_amino_acids>1089</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEEMEAGGGMVAGSHKRNELVRIRHDSDSGPKPLKPLNSQICQICGDTVGSTASGDVFIACNECAFPVCRACYEYERKDGNQSCPQCKTRYKRFKGSPRVDGDDDEEDVDDIDNEFNYAQGNSKARQQWQGDDAGLSSSSRHESQQPIPLLTDGQPVSGDFPSATTDTQSVRSMSGPLGPGDKHSSLSYVDPRQPVPVRIVDPSKDLNSYGLGSVDWKERVEGWKLKQEKNLVHSTNRYSEGKGGDIEGTGSNGEELQMADDARQPMSRVVPIPSSHLTPYRVVIILRLIILGFFMQYRLTHPVNDAYPLWLVSVICEVWFALSWLLDQFPKWSPVNRETFLDRLALRHDREGEPSQLAPVDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARRWVPFCKKFSIEPRAPEFYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFLMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPMYVGTGCCFNRQALYGYDPVLTEADLEPNIIVKSCCGGSRKKGRSGNKKYIDKKRAVKRTESTVPIFNMEDIEEGVEGYDEEKSLLMSQRSLEKRFGQSPVFIAATFMEQGGIPASTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWYSLYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLMLLERLAYINTIVYPLTSLPLLAYCTLPAICLLTGKFIIPEISNYAGMWFILLFLSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTTLLIPPTAILIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIVHLYPFLKGLLGRQNRTPTIVIVWAVLLASIFSLLWVRIDPFTSDASKTAARGQCGINC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92109" e_stop="92381"/>
            <exon e_start="92775" e_stop="92971"/>
            <exon e_start="93085" e_stop="93435"/>
            <exon e_start="93890" e_stop="94734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.951" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.670" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="92109" e_stop="92381" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92775" e_stop="92971" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.884">
            <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93085" e_stop="93435" e_length="351"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.670">
            <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="93890" e_stop="94734" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92109" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92123" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92175" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92204" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92208" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92228" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92228" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92259" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92278" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="93984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92308" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="93977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92778" stop="92971"/>
              <exon start="93085" stop="93316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92797" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92816" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92946" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93089" stop="93435"/>
              <exon start="93890" stop="94264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="93435"/>
              <exon start="93890" stop="94322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93157" stop="93435"/>
              <exon start="93890" stop="94472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93256" stop="93435"/>
              <exon start="93890" stop="94536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93273" stop="93435"/>
              <exon start="93890" stop="94205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93297" stop="93435"/>
              <exon start="93890" stop="94373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93994" stop="94702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93994" stop="94668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94088" stop="94712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94090" stop="94697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94104" stop="94468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94138" stop="94734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94311" stop="94726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG : GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG : ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG : ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTTGTTATCTT</gDNA_template>
            <first_frame> L  R  S  T  *  K  G  W  M  A  F  R  V  L  C  M  W  E  L  G  V  V  L  T  G  R  P  F  T  G  M  I  L  Y  *  L  R  L  I  W  S  Q  T  S  L  L  R  A  V  V  V  G  Q  G  R  R  E  G  V  E  T  R  N  T  L  I  R  R  G  Q  *  K  E  Q  N  P  L  S  Q  F  S  I  W  K  T  L  K  K  A  *  K  :  D  M  M  R  R  S  H  C  L  C  H  R  G  A  W  R  S  D  L  V  N  H  Q  C  L  L  L  P  H  L  W  N  K  E  A  F  L  H  P  L  I  L  H  L  F  *  K  K  Q  F  M  L  L  A  V  A  T  R  T  R  L  N  G  E  K  R :   L  G  G  Y  M  G  L  S  L  K  I  F  *  L  G  L  R  C  M  H  E  D  G  I  P  S  I  A  C  L  L  D  Q  R  L  K  G  L  L  L  S  I  F  L  I  V  *  T  R  C  S  G  G  L  W  V  L  L  K  S  C  *  V  G  I  A  Q  Y  G  M  A  T  V  A  D  *  C  F  W  R  D  *  H  I  L  I  Q  S  S  I  L  S  H  L  Y  P  C  L  L  T  V  R  F  L  P  S  V  F  *  P  A  N  L  S  F  L  R :   *  A  T  M  L  A  C  G  S  F  Y  S  F  F  P  F  S  Q  L  V  Y  W  S  L  G  G  V  V  *  V  L  K  T  G  G  E  M  N  S  F  G  S  L  V  V  H  R  L  T  C  L  Q  F  S  K  V  S  *  K  C  L  L  G  L  I  P  T  L  Q  S  H  Q  R  Q  T  M  R  M  E  I  L  L  S  F  M  C  S  N  G  Q  L  S  L  F  L  L  Q  Q  S  L  S  *  I  W  *  E  L  W  Q  V  F  R  M  P  *  T  V  D  I  N  H  G  V  L  Y  S  G  S  C  S  L  P  F  G  S  L  S  T  C  T  L  S  S  K  V  C  W  D  V  R  I  V  L  L  P  L  S  L  S  G  L  F  S  L  H  P  Y  S  H  C  F  G  C  V  S  T  P  S  H  Q  T  R  Q  R  L  L  Q  E  V  N  V  V  S  T  V  S  E  K  F  I  Y  F  K  V  R  C  L  L  I  H  S  H  V  V  Y  K  K  T  M  P  V  R  L  S  P  V  V  I  L  Y  Q  C  C  K  S  E  G  V  *  C  M  K  D  I  K  T  H  G  F  T  P  F  C  C  I  P  F  A  L  S  H  M  F  M  Q  K  L  *  L  M  M  *  R  I  L  N  L  I  L  L  S  </first_frame>
            <second_frame>  S  D  Q  L  E  R  V  G  W  P  S  G  S  Y  V  C  G  N  W  V  L  F  *  Q  A  G  P  L  R  V  *  S  C  I  N  *  G  *  F  G  A  K  H  H  C  *  E  L  L  W  W  V  K  E  E  G  K  E  W  K  Q  E  I  H  *  *  E  E  G  S  K  K  N  R  I  H  C  P  N  F  Q  Y  G  R  H  *  R  R  R  R  R :   I  *  *  G  E  V  T  A  Y  V  T  E  E  L  G  E  A  I  W  S  I  T  S  V  Y  C  C  H  I  Y  G  T  R  R  H  S  C  I  H  *  S  C  I  S  F  E  R  S  N  S  C  Y  *  L  W  L  R  G  Q  D  *  M  G  K  R   : D  W  V  D  I  W  V  C  H  *  R  Y  F  D  W  V  *  D  A  C  T  R  M  V  F  P  L  L  H  A  S  S  T  S  V  *  R  V  C  S  Y  Q  S  F  *  S  F  K  P  G  A  P  V  G  F  G  F  C  *  N  P  V  E  *  A  L  P  N  M  V  W  L  Q  W  Q  I  D  A  S  G  E  I  S  I  Y  *  Y  N  R  L  S  S  H  I  F  T  L  A  C  L  L  Y  A  S  C  H  L  S  S  D  R  Q  I  Y  H  S  *   : D  K  Q  L  C  W  H  V  V  H  S  T  L  S  F  H  F  R  N  W  Y  I  G  A  *  V  E  W  C  E  Y  *  R  L  V  E  K  *  T  V  L  G  H  W  W  Y  I  G  S  L  V  C  S  F  P  R  S  P  E  S  A  C  W  D  *  Y  Q  L  Y  S  H  I  K  G  K  R  *  G  W  R  F  C  *  A  L  C  V  Q  M  D  N  S  P  Y  S  S  Y  S  N  P  Y  R  E  S  G  R  N  C  G  R  C  F  V  C  H  K  Q  W  I  S  I  M  G  S  S  I  R  E  V  V  L  C  H  L  G  H  C  P  L  V  P  F  P  Q  R  F  V  G  T  S  E  S  Y  S  Y  H  C  H  C  L  G  C  S  P  C  I  H  I  L  I  A  L  G  A  Y  R  P  L  H  I  R  R  V  K  D  C  C  K  R  S  M  W  Y  Q  L  L  V  R  S  L  F  I  L  R  *  D  V  C  L  S  I  L  M  L  Y  I  R  K  L  C  R  F  G  *  V  L  *  S  F  C  T  N  V  V  S  R  K  E  C  D  A  *  K  T  S  K  L  M  D  L  R  L  F  V  V  Y  L  L  P  Y  L  T  C  S  C  K  N  C  D  L  *  C  E  E  F  *  I  *  F  C  Y  L </second_frame>
            <third_frame>   Q  I  N  L  K  G  L  D  G  L  Q  G  P  M  Y  V  G  T  G  C  C  F  N  R  Q  A  L  Y  G  Y  D  P  V  L  T  E  A  D  L  E  P  N  I  I  V  K  S  C  C  G  G  S  R  K  K  G  R  S  G  N  K  K  Y  I  D  K  K  R  A  V  K  R  T  E  S  T  V  P  I  F  N  M  E  D  I  E  E  G  V  E   : G  Y  D  E  E  K  S  L  L  M  S  Q  R  S  L  E  K  R  F  G  Q  S  P  V  F  I  A  A  T  F  M  E  Q  G  G  I  P  A  S  T  N  P  A  S  L  L  K  E  A  I  H  V  I  S  C  G  Y  E  D  K  T  E  W  G  K  E  :  I  G  W  I  Y  G  S  V  T  E  D  I  L  T  G  F  K  M  H  A  R  G  W  Y  S  L  Y  C  M  P  P  R  P  A  F  K  G  S  A  P  I  N  L  S  D  R  L  N  Q  V  L  R  W  A  L  G  S  V  E  I  L  L  S  R  H  C  P  I  W  Y  G  Y  S  G  R  L  M  L  L  E  R  L  A  Y  I  N  T  I  V  Y  P  L  T  S  L  P  L  L  A  Y  C  T  L  P  A  I  C  L  L  T  G  K  F  I  I  P  E  :  I  S  N  Y  A  G  M  W  F  I  L  L  F  L  S  I  F  A  T  G  I  L  E  L  R  W  S  G  V  S  I  E  D  W  W  R  N  E  Q  F  W  V  I  G  G  T  S  A  H  L  F  A  V  F  Q  G  L  L  K  V  L  A  G  I  D  T  N  F  T  V  T  S  K  A  N  D  E  D  G  D  F  A  E  L  Y  V  F  K  W  T  T  L  L  I  P  P  T  A  I  L  I  V  N  L  V  G  I  V  A  G  V  S  Y  A  I  N  S  G  Y  Q  S  W  G  P  L  F  G  K  L  F  F  A  I  W  V  I  V  H  L  Y  P  F  L  K  G  L  L  G  R  Q  N  R  T  P  T  I  V  I  V  W  A  V  L  L  A  S  I  F  S  L  L  W  V  R  I  D  P  F  T  S  D  A  S  K  T  A  A  R  G  Q  C  G  I  N  C  *  *  E  V  Y  L  F  *  G  K  M  F  A  Y  P  F  S  C  C  I  *  E  N  Y  A  G  S  V  K  S  C  S  H  F  V  P  M  L  *  V  G  R  S  V  M  H  E  R  H  Q  N  S  W  I  Y  A  F  L  L  Y  T  F  C  P  I  S  H  V  H  A  K  T  V  T  Y  D  V  K  N  F  K  F  N  F  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92111" stop="92381"/>
                    <exon start="92775" stop="92971"/>
                    <exon start="93085" stop="93435"/>
                    <exon start="93890" stop="94477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1404</number_coding_nucleotides>
                  <number_encoded_amino_acids>468</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QINLKGLDGLQGPMYVGTGCCFNRQALYGYDPVLTEADLEPNIIVKSCCGGSRKKGRSGNKKYIDKKRAVKRTESTVPIFNMEDIEEGVEGYDEEKSLLMSQRSLEKRFGQSPVFIAATFMEQGGIPASTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWYSLYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLMLLERLAYINTIVYPLTSLPLLAYCTLPAICLLTGKFIIPEISNYAGMWFILLFLSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTTLLIPPTAILIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIVHLYPFLKGLLGRQNRTPTIVIVWAVLLASIFSLLWVRIDPFTSDASKTAARGQCGINC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="95021" PGL_stop="94178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95021" e_stop="95015"/>
            <exon e_start="94735" e_stop="94178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.857">
            <gDNA_exon_boundary e_start="95021" e_stop="95015" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95014" i_stop="94736" i_length="279"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94735" e_stop="94178" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95021" stop="95015"/>
              <exon start="94735" stop="94178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTAT : TAAGATAACAAAATTAAATTTAAAATTCTTCACATCATAAGTCACAGTTTTTGCATGAACATGTGAGATAGGGCAAAAGGTATACAACAAAAAGGCGTAAATCCATGAGTTTTGATGTCTTTCATGCATCACACTCCTTCCGACTTACAACATTGGTACAAAATGACTACAGGACTTAACCGAACCGGCATAGTTTTCTTATATACAACATGAGAATGGATAAGCAAACATCTTACCTTAAAATAAATAAACTTCTCACTAACAGTTGATACCACATTGACCTCTTGCAGCAGTCTTTGACGCGTCTGATGTGAAGGGGTCGATACGCACCCAAAGCAATGAGAATATGGATGCAAGGAGAACAGCCCAGACAATGACAATGGTAGGAGTACGATTCTGACGTCCCAACAAACCTTTGAGGAAAGGGTACAAGTGGACAATGACCCAAATGGCAAAGAACAACTTCCCGAATAGAGGACCCCATGATTGATATCCACTGTTTATGGCATACGAAACACCTGCCACAATTCCTACCAGATTCACGATAAGGATTGCTGT</gDNA_template>
            <first_frame> F  L   : L  R  *  Q  N  *  I  *  N  S  S  H  H  K  S  Q  F  L  H  E  H  V  R  *  G  K  R  Y  T  T  K  R  R  K  S  M  S  F  D  V  F  H  A  S  H  S  F  R  L  T  T  L  V  Q  N  D  Y  R  T  *  P  N  R  H  S  F  L  I  Y  N  M  R  M  D  K  Q  T  S  Y  L  K  I  N  K  L  L  T  N  S  *  Y  H  I  D  L  L  Q  Q  S  L  T  R  L  M  *  R  G  R  Y  A  P  K  A  M  R  I  W  M  Q  G  E  Q  P  R  Q  *  Q  W  *  E  Y  D  S  D  V  P  T  N  L  *  G  K  G  T  S  G  Q  *  P  K  W  Q  R  T  T  S  R  I  E  D  P  M  I  D  I  H  C  L  W  H  T  K  H  L  P  Q  F  L  P  D  S  R  *  G  L  L  </first_frame>
            <second_frame>  F  Y  :  *  D  N  K  I  K  F  K  I  L  H  I  I  S  H  S  F  C  M  N  M  *  D  R  A  K  G  I  Q  Q  K  G  V  N  P  *  V  L  M  S  F  M  H  H  T  P  S  D  L  Q  H  W  Y  K  M  T  T  G  L  N  R  T  G  I  V  F  L  Y  T  T  *  E  W  I  S  K  H  L  T  L  K  *  I  N  F  S  L  T  V  D  T  T  L  T  S  C  S  S  L  *  R  V  *  C  E  G  V  D  T  H  P  K  Q  *  E  Y  G  C  K  E  N  S  P  D  N  D  N  G  R  S  T  I  L  T  S  Q  Q  T  F  E  E  R  V  Q  V  D  N  D  P  N  G  K  E  Q  L  P  E  *  R  T  P  *  L  I  S  T  V  Y  G  I  R  N  T  C  H  N  S  Y  Q  I  H  D  K  D  C  C </second_frame>
            <third_frame>   F  I :   K  I  T  K  L  N  L  K  F  F  T  S  *  V  T  V  F  A  *  T  C  E  I  G  Q  K  V  Y  N  K  K  A  *  I  H  E  F  *  C  L  S  C  I  T  L  L  P  T  Y  N  I  G  T  K  *  L  Q  D  L  T  E  P  A  *  F  S  Y  I  Q  H  E  N  G  *  A  N  I  L  P  *  N  K  *  T  S  H  *  Q  L  I  P  H  *  P  L  A  A  V  F  D  A  S  D  V  K  G  S  I  R  T  Q  S  N  E  N  M  D  A  R  R  T  A  Q  T  M  T  M  V  G  V  R  F  *  R  P  N  K  P  L  R  K  G  Y  K  W  T  M  T  Q  M  A  K  N  N  F  P  N  R  G  P  H  D  *  Y  P  L  F  M  A  Y  E  T  P  A  T  I  P  T  R  F  T  I  R  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="99124" PGL_stop="95321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99124" e_stop="98229"/>
            <exon e_start="96290" e_stop="96129"/>
            <exon e_start="96028" e_stop="95321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.898" e_score="0.993"/>
          <exon-intron don_prob="0.869" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="99124" e_stop="98229" e_length="896"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.898">
            <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96290" e_stop="96129" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="96028" e_stop="95321" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99124" stop="98286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="98516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99000" stop="98684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98831" stop="98229"/>
              <exon start="96290" stop="96129"/>
              <exon start="96028" stop="95332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98814" stop="98234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98804" stop="98229"/>
              <exon start="96290" stop="96139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98804" stop="98244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98791" stop="98490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98706" stop="98229"/>
              <exon start="96290" stop="96129"/>
              <exon start="96028" stop="95779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98505" stop="98229"/>
              <exon start="96290" stop="96129"/>
              <exon start="96028" stop="95762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96288" stop="96129"/>
              <exon start="96028" stop="95688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96155" stop="96129"/>
              <exon start="96028" stop="95321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTAGAGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAG : CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG : AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTGAAA</gDNA_template>
            <first_frame> C  *  R  C  D  F  Y  K  S  F  P  P  F  V  F  W  G  W  K  G  E  E  Q  S  H  H  C  Y  S  F  F  I  L  T  N  I  A  Y  I  A  S  H  P  P  R  Y  Y  Q  Y  L  F  K  N  S  I  F  T  H  *  S  H  N  P  S  S  Q  E  W  D  F  N  I  P  T  *  *  K  S  I  L  *  M  S  Q  I  V  C  E  F  F  L  V  F  S  S  S  T  L  K  R  V  I  F  G  F  L  *  G  S  L  D  *  W  L  E  G  I  Y  K  R  L  S  V  K  R  M  G  V  C  L  F  L  I  W  G  Y  N  G  V  S  K  I  Q  T  F  V  L  V  D  C  L  H  Q  L  V  R  W  E  V  W  G  L  V  F  H  H  L  I  L  L  I  P  G  M  K  M  V  D  L  S  Y  L  I  P  I  C  V  *  N  I  Y  H  S  P  R  G  L  R  L  Q  A  M  G  R  K  K  G  L  *  R  R  R  R  R  K  V  G  *  R  L  S  L  R  F  Q  I  L  H  *  G  G  *  *  V  V  R  S  P  G  R  Y  L  E  L  L  *  L  R  W  R  Q  *  E  H  I  *  W  W  E  V  V  D  I  L  V  L  R  C  S  I  V  S  *  R  L  K  D  G  L  D  C  L  G  V  T  L  L  M  *  L  E  L  P  L  A  K  L  *  S :   F  L  C  M  I  L  L  I  R  T  C  H  L  N  P  V  T  S  P  K  F  Q  F  L  P  H  *  L  Q  E  P  V  P  E  S  A  L  P  Y  *  H  I  H  L  S  *  *  R  L  G  *  R  F  R :   E  E  F  T  M  A  Y  L  M  H  L  *  K  Y  *  K  R  V  G  L  L  S  S  I  E  V  S  L  L  V  L  *  E  S  F  P  M  R  P  Q  T  T  L  L  M  I  H  C  G  K  P  T  E  R  F  S  R  K  R  R  L  E  T  *  R  L  F  *  L  D  Q  Q  L  V  L  Y  L  A  L  Q  P  F  L  *  R  W  L  V  S  T  C  R  W  V  L  L  V  E  E  Q  F  T  R  M  *  F  M  L  L  *  V  Y  W  N  R  M  G  F  R  V  C  I  K  G  L  V  P  A  A  *  S  *  F  L  P  Q  E  Y  L  S  C  V  M  K  H  A  R  G  Y  W  L  R  Q  K  M  R  S  K  G  A  L  S  E  I  C  *  A  K  G  R  E  N  L  F  I  R  L  S  F  I  Y  L  A  P  F  S  R  R  W  K  F  C  F  G  L  S  L  V  C  Q  V  R  N  A  N  T  G  F  S  P  F  F  T  T  E  S  R  *  *  N  A  V  *  W  *  D  I  A  I  A  A  L  *  L  *   </first_frame>
            <second_frame>  V  R  G  V  I  S  T  N  L  F  L  L  S  F  S  G  V  G  R  E  R  N  R  V  T  T  V  T  H  F  S  S  *  Q  T  *  H  I  S  P  P  I  P  Q  D  I  I  N  I  S  S  K  I  R  S  L  L  I  N  L  T  T  P  L  L  K  N  G  I  L  I  Y  P  L  S  K  N  R  F  F  E  C  P  K  L  S  V  S  F  F  L  F  S  Q  A  L  H  *  K  G  *  F  L  V  F  C  E  E  V  *  I  D  G  *  K  G  Y  T  S  V  *  A  *  K  G  W  E  Y  V  Y  F  S  F  G  A  T  M  E  S  P  R  F  K  L  L  S  W  W  I  V  C  I  S  W  S  D  G  K  Y  G  V  W  C  F  I  T  *  S  F  *  F  P  G  *  K  W  W  I  *  A  T  L  F  R  F  V  F  E  I  F  I  I  L  R  G  V  *  D  C  R  Q  W  G  G  R  R  G  C  K  G  G  E  E  E  R  W  A  K  D  *  A  *  G  F  K  S  F  I  K  E  V  N  K  W  C  D  R  R  G  D  I  *  N  C  C  S  S  V  G  D  N  K  N  T  F  D  G  G  K  *  W  T  F  *  Y  *  G  V  Q  *  Y  H  E  D  *  R  M  D  W  I  V  *  G  *  L  C  *  C  D  *  S  C  P  *  Q  S  C  R   : A  F  C  V  *  Y  C  *  *  E  L  V  I  *  T  R  *  P  V  Q  N  S  N  S  C  L  I  S  C  R  S  L  C  R  S  Q  L  Y  L  T  D  I  S  T  *  A  S  E  D  S  V  D  D  S   : E  R  S  L  Q  W  L  I  *  C  I  C  K  N  I  E  R  G  W  A  C  *  A  L  *  R  S  H  S  *  C  Y  R  S  H  S  L  C  G  H  K  L  L  C  L  *  F  I  A  E  S  L  Q  K  D  F  Q  G  R  E  D  W  K  H  R  D  S  S  N  W  I  S  S  W  C  Y  I  *  H  C  N  L  S  S  R  G  G  S  *  A  H  A  G  G  C  C  *  W  K  S  S  L  Q  E  C  N  S  C  S  C  E  Y  T  G  T  G  W  D  S  G  S  V  *  R  A  W  S  Q  L  H  E  V  S  S  C  R  R  N  I  F  H  V  L  *  S  M  Q  E  D  I  G  *  G  R  K  *  E  V  K  E  L  F  Q  K  Y  A  R  Q  R  V  G  K  I  S  L  Y  D  *  V  L  F  I  L  L  H  F  P  D  A  G  N  F  V  L  D  *  A  W  F  V  R  *  E  M  L  I  L  V  L  V  L  F  S  L  L  N  Q  D  N  E  M  Q  F  D  G  K  I  L  P  L  P  L  C  D  C  E  </second_frame>
            <third_frame>   L  E  V  *  F  L  Q  I  F  S  S  F  R  F  L  G  L  E  G  R  G  T  E  S  P  L  L  L  I  F  H  P  N  K  H  S  I  Y  R  L  P  S  P  K  I  L  S  I  S  L  Q  K  F  D  L  Y  S  L  I  S  Q  P  L  F  S  R  M  G  F  *  Y  T  H  L  V  K  I  D  S  L  N  V  P  N  C  L  *  V  F  S  C  F  L  K  L  Y  I  E  K  G  N  F  W  F  F  V  R  K  S  R  L  M  A  R  R  D  I  Q  A  F  E  R  K  K  D  G  S  M  S  I  S  H  L  G  L  Q  W  S  L  Q  D  S  N  F  C  P  G  G  L  F  A  S  V  G  Q  M  G  S  M  G  F  G  V  S  S  P  N  P  S  D  S  R  D  E  N  G  G  F  K  L  P  Y  S  D  L  C  L  K  Y  L  S  F  S  E  G  F  K  I  A  G  N  G  E  E  E  G  V  V  K  E  E  K  K  K  G  G  L  K  I  K  L  K  V  S  N  P  S  L  R  R  L  I  S  G  A  I  A  G  A  I  S  R  T  A  V  A  P  L  E  T  I  R  T  H  L  M  V  G  S  S  G  H  S  S  T  E  V  F  N  S  I  M  K  T  E  G  W  T  G  L  F  R  G  N  F  V  N  V  I  R  V  A  P  S  K  A  V  E  :  L  F  V  Y  D  T  V  N  K  N  L  S  S  K  P  G  N  Q  S  K  I  P  I  P  A  S  L  V  A  G  A  C  A  G  V  S  S  T  L  L  T  Y  P  L  E  L  V  K  T  R  L  T  I  Q  :  R  G  V  Y  N  G  L  F  D  A  F  V  K  I  L  K  E  G  G  P  A  E  L  Y  R  G  L  T  P  S  V  I  G  V  I  P  Y  A  A  T  N  Y  F  A  Y  D  S  L  R  K  A  Y  R  K  I  F  K  E  E  K  I  G  N  I  E  T  L  L  I  G  S  A  A  G  A  I  S  S  T  A  T  F  P  L  E  V  A  R  K  H  M  Q  V  G  A  V  S  G  R  A  V  Y  K  N  V  I  H  A  L  V  S  I  L  E  Q  D  G  I  Q  G  L  Y  K  G  L  G  P  S  C  M  K  L  V  P  A  A  G  I  S  F  M  C  Y  E  A  C  K  R  I  L  V  E  A  E  N  E  K  *  R  S  S  F  R  N  M  L  G  K  G  *  G  K  S  L  Y  T  I  E  F  Y  L  S  C  S  I  F  Q  T  L  E  I  L  F  W  I  E  P  G  L  S  G  E  K  C  *  Y  W  F  *  S  F  F  H  Y  *  I  K  I  M  K  C  S  L  M  V  R  Y  C  H  C  R  F  V  I  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98861" stop="98229"/>
                    <exon start="96290" stop="96129"/>
                    <exon start="96028" stop="95555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSCFLKLYIEKGNFWFFVRKSRLMARRDIQAFERKKDGSMSISHLGLQWSLQDSNFCPGGLFASVGQMGSMGFGVSSPNPSDSRDENGGFKLPYSDLCLKYLSFSEGFKIAGNGEEEGVVKEEKKKGGLKIKLKVSNPSLRRLISGAIAGAISRTAVAPLETIRTHLMVGSSGHSSTEVFNSIMKTEGWTGLFRGNFVNVIRVAPSKAVELFVYDTVNKNLSSKPGNQSKIPIPASLVAGACAGVSSTLLTYPLELVKTRLTIQRGVYNGLFDAFVKILKEGGPAELYRGLTPSVIGVIPYAATNYFAYDSLRKAYRKIFKEEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGAVSGRAVYKNVIHALVSILEQDGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEAENEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99110" stop="98913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQIFSSFRFLGLEGRGTESPLLLIFHPNKHSIYRLPSPKILSISLQKFDLYSLISQPLFSRMGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96391" e_stop="96129"/>
            <exon e_start="96028" e_stop="95321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.869" acc_prob="0.984" e_score="0.989"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="96391" e_stop="96129" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.869" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="96028" e_stop="95321" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96391" stop="96129"/>
              <exon start="96028" stop="95816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96288" stop="96129"/>
              <exon start="96028" stop="95688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96155" stop="96129"/>
              <exon start="96028" stop="95321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG : AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTGAAA</gDNA_template>
            <first_frame> *  P  F  E  S  D  N  C  A  S  N  Y  G  W  E  N  A  S  L  L  K  V  A  C  H  G  *  Y  N  F  F  *  C  S  F  L  C  M  I  L  L  I  R  T  C  H  L  N  P  V  T  S  P  K  F  Q  F  L  P  H  *  L  Q  E  P  V  P  E  S  A  L  P  Y  *  H  I  H  L  S  *  *  R  L  G  *  R  F  R :   E  E  F  T  M  A  Y  L  M  H  L  *  K  Y  *  K  R  V  G  L  L  S  S  I  E  V  S  L  L  V  L  *  E  S  F  P  M  R  P  Q  T  T  L  L  M  I  H  C  G  K  P  T  E  R  F  S  R  K  R  R  L  E  T  *  R  L  F  *  L  D  Q  Q  L  V  L  Y  L  A  L  Q  P  F  L  *  R  W  L  V  S  T  C  R  W  V  L  L  V  E  E  Q  F  T  R  M  *  F  M  L  L  *  V  Y  W  N  R  M  G  F  R  V  C  I  K  G  L  V  P  A  A  *  S  *  F  L  P  Q  E  Y  L  S  C  V  M  K  H  A  R  G  Y  W  L  R  Q  K  M  R  S  K  G  A  L  S  E  I  C  *  A  K  G  R  E  N  L  F  I  R  L  S  F  I  Y  L  A  P  F  S  R  R  W  K  F  C  F  G  L  S  L  V  C  Q  V  R  N  A  N  T  G  F  S  P  F  F  T  T  E  S  R  *  *  N  A  V  *  W  *  D  I  A  I  A  A  L  *  L  *   </first_frame>
            <second_frame>  N  L  L  S  Q  T  I  V  L  P  T  T  D  G  R  M  L  H  Y  *  K  W  L  V  M  A  D  I  I  F  F  N  A  A  F  C  V  *  Y  C  *  *  E  L  V  I  *  T  R  *  P  V  Q  N  S  N  S  C  L  I  S  C  R  S  L  C  R  S  Q  L  Y  L  T  D  I  S  T  *  A  S  E  D  S  V  D  D  S   : E  R  S  L  Q  W  L  I  *  C  I  C  K  N  I  E  R  G  W  A  C  *  A  L  *  R  S  H  S  *  C  Y  R  S  H  S  L  C  G  H  K  L  L  C  L  *  F  I  A  E  S  L  Q  K  D  F  Q  G  R  E  D  W  K  H  R  D  S  S  N  W  I  S  S  W  C  Y  I  *  H  C  N  L  S  S  R  G  G  S  *  A  H  A  G  G  C  C  *  W  K  S  S  L  Q  E  C  N  S  C  S  C  E  Y  T  G  T  G  W  D  S  G  S  V  *  R  A  W  S  Q  L  H  E  V  S  S  C  R  R  N  I  F  H  V  L  *  S  M  Q  E  D  I  G  *  G  R  K  *  E  V  K  E  L  F  Q  K  Y  A  R  Q  R  V  G  K  I  S  L  Y  D  *  V  L  F  I  L  L  H  F  P  D  A  G  N  F  V  L  D  *  A  W  F  V  R  *  E  M  L  I  L  V  L  V  L  F  S  L  L  N  Q  D  N  E  M  Q  F  D  G  K  I  L  P  L  P  L  C  D  C  E  </second_frame>
            <third_frame>   T  F  *  V  R  Q  L  C  F  Q  L  R  M  G  E  C  F  T  T  K  S  G  L  S  W  L  I  *  F  F  L  M  Q  L  F  V  Y  D  T  V  N  K  N  L  S  S  K  P  G  N  Q  S  K  I  P  I  P  A  S  L  V  A  G  A  C  A  G  V  S  S  T  L  L  T  Y  P  L  E  L  V  K  T  R  L  T  I  Q  :  R  G  V  Y  N  G  L  F  D  A  F  V  K  I  L  K  E  G  G  P  A  E  L  Y  R  G  L  T  P  S  V  I  G  V  I  P  Y  A  A  T  N  Y  F  A  Y  D  S  L  R  K  A  Y  R  K  I  F  K  E  E  K  I  G  N  I  E  T  L  L  I  G  S  A  A  G  A  I  S  S  T  A  T  F  P  L  E  V  A  R  K  H  M  Q  V  G  A  V  S  G  R  A  V  Y  K  N  V  I  H  A  L  V  S  I  L  E  Q  D  G  I  Q  G  L  Y  K  G  L  G  P  S  C  M  K  L  V  P  A  A  G  I  S  F  M  C  Y  E  A  C  K  R  I  L  V  E  A  E  N  E  K  *  R  S  S  F  R  N  M  L  G  K  G  *  G  K  S  L  Y  T  I  E  F  Y  L  S  C  S  I  F  Q  T  L  E  I  L  F  W  I  E  P  G  L  S  G  E  K  C  *  Y  W  F  *  S  F  F  H  Y  *  I  K  I  M  K  C  S  L  M  V  R  Y  C  H  C  R  F  V  I  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96305" stop="96129"/>
                    <exon start="96028" stop="95555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLMQLFVYDTVNKNLSSKPGNQSKIPIPASLVAGACAGVSSTLLTYPLELVKTRLTIQRGVYNGLFDAFVKILKEGGPAELYRGLTPSVIGVIPYAATNYFAYDSLRKAYRKIFKEEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGAVSGRAVYKNVIHALVSILEQDGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEAENEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 253 chains have been computed
$ 
$ memory statistics:
$ 202824 bytes spliced alignments in total
$ 93 spliced alignments have been stored
$ 2180 bytes was the average size of a spliced alignment
$ 20456 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1704 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 312 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-20 02:36:25
-->
