<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 17:29:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321260" ref_strand="+" ref_description="SGN-U321260        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | bZIP protein HY5 (HY5), identical to HY5 protein GI:2251085 from (Arabidopsis thaliana) | chr5:3593415-3594993 REVERSE | Aliases: F2I11.150, F2I11_150(evalue: 1e-34, score=143) genbank/nr: gi|6018699|emb|CAB57979.1| THY5 protein [Lycopersicon esculentum](evalue: 3e-54, score=214)">
      <seq>cttttctgaataaaatacgaaactgtacttttcccttaatttagtgtttttttcaagtgtagagaaaaatgcaagagcaagcgacgagttctattgccgctagttcactaccttcaagtagtgagagatcatctagttcagctttacatcatgaactcaaagaaggtatggagagtgatgatgagatcagaagagtgccggagatgggcggagaagcgacggggacaacgtcagcttctggaagagatggagtatcggccgccggtcaagctcaaccatcagctgggactcaaaggaagagaggaagaagcccagctgacaaagaaaacaaaaggttaaaaagattgttgagaaatagagtatcagcacaacaagcaagggagaggaagaaagcatatttgatagatctggaagcaagggtgaaggaattggaaacaaagaatgcagaacttgaagagaggttgtctactttgcaaaatgagaaccaaatgcttagacatatactgaagaacacaacagcaggtgcacaggaagggaggaagtagacatatgatcgatcttatgtcgatatgtcagcattcttgtttagatcctatgtaggcactgaagagaaattctcttctggatttgagaatgcatgctagtttcgggtggattgttctgatttgatgcattgcatacttgctactcttaaccgttgtcggttatatattatcagcagagagtgaaggattgtggctaagctattcttaaagtcaccagcctttggtaagttgcatggactaatcttggatgatatatgctacaattacctataacctttgctagcgttccctagtgagttgaaatctttattaaaaaccaaatcgatgtactgataagactcggtgtaaaagaatttgtgcaattgaaaaccaattaggtacattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="2271" stop="6414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2571" g_stop="2735" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2890" g_stop="3067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="343" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3200" g_stop="3356" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="500" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5682" g_stop="6118" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="937" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U321260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2571" e_stop="2735"/>
          <exon e_start="2890" e_stop="3067"/>
          <exon e_start="3200" e_stop="3356"/>
          <exon e_start="5682" e_stop="6118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAGGTAATCTTTTTTAAAAAAAATTTAAATCCAGCTTTTTAACATTTAATTTTGACGAATTTATGGAGTAATTTTTTGAAGAATGTGTTGTTTTGGGTTAGGTATGGTTGAGATTTTGAAATAGTTTTTAAAAAACATTTTGTGTTTTTTTGTGAAGGTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAGGTAAAAACCTTAAACATCATGCCACGTAGGTGTATCTACTTGTCACATGTTATGGGCTTCCACACTTTCTTTTTTTGGATAGCAGTGGCATTTTAGTTAATATTGTATTTTTTTTTGGTGGGGTTGAAAAAGATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACATGTAAACATTCTTCTCTCTACTTCTATTTTTGCAATAGAATTGTTCATCTATATATCCTATATGCTTGAACGTGTGCCATGTCCGGTCTAATTACTATTCAGATACTTCTTCCACTTACCTCTATTTCTACTGAATCCATTCACAGCCAAACTCTCACCTCCCCCCGCATTTCTACATTCGTGCATCTTTCTCTTCACATATCTGAATCTCTTCCCGCATCTTATTCTCTTTCGAAACCACACTCAGCTTGTTTCAACTGTCCTGATTTTATTCTATATCTCCTAGTATATGTGTCCACACATCCATCACAATATCTTCATTTCCACAACTTTCATCTTTTGAACGTGAGAGTGCTCAACTACATGTACTTGCAAAGGCGTATTCAGGATTTCGGCAAAATGGATGCACAATTACGAATAAAATGCATCTTAAATATAAATTTGATCAATTTGACTTTAAAGTTTCTAATATAAAACCATTAAACTTTTAAAATTGTAGGTGCAAAATATATAATACTACTAGTTTAAATTTTAATGCACACATTTGATTTAATTATACATATAAAATATTTTTTAGGAATTTTTAATGTAATACACTTCAAAATTTTTGAAAAAATTAAGGAAAAAAAAAGAAGAAAAATTAGTTAAAACGCTAAAAGTATATAACCAATAACTACTTGTAGAGGTGCTACTTAAAAAGACAAGATAGATATCTAAGATTTTAATTTCTATCCTCACAGAGGTGCACCCAATCATCGTCATCATATTATTATACGATACTTTAACTGTGGGTTCACACATCTATATTTAAATATTTTTCTTAAAATATAACACTATTATATTTGATCTAGAGATGGTAGCATGGGTTCATGTGAACCCATGACACCCCCTCTAGATATGCCCCTGTATACTCAACCCCATACGACATAGTTGGTCTAACCGTCACTATGTAGAATTTCTCTTTATGTTTTGGTGGAACCTTCTTATCACTAGCAACTCAGATGCAAGTCTCTATGTCATACACGTTGCACCAATACAGTGAGTGACATCCTCGTCAATCACCCCATTTTCTTGGATAACGGACCAATATACTTGAATAGAGTATAGCACCAAAAGTTGTGGTCTATTGTTCAATGAAGAAGTTGAGAGCCATGAGATCTCAAGTTCAAATTCAATAGAGTAAAAGAGCTACTAGGTGATTGTTTCTGTATGTTCTAGCCTTGGTGAATATAGTTACCTGGTATTTGATGCTGGTTGGAGGTGATGATAGGTATCTCGGGTAATTAGTTAAGGTGCGGGAAAGCAGCCTTAAAAATAAATTAGATGAATGGGGGGATTATCCAGAAACAATTTATAAGCTCAGTCATTTCTTTGGTTTAGCTCACTCTTATATCGGGCTTTTGTTATGTCCCATCAATTATTTATTAAACATTGAAGACGAGGAGACAAACTATGAATTATCAACAATATGCTGTGACTTCAGCCTCCTGAAGTTACATTAGTATTATGTAATTTATGTGCAGTAGAAATGTACTAGCGTATGAACATAGATCAAAGCATGGAAGCTTTCTCACCTTCTATATTCCCCAATATGCATTATACTGCCCATCATATGTGTACAGAGCATTTAAGCTGAACATATAATGTATGAATGAAGTGTTCTTGTATCTTCCATAGTATATCTGGTAGCGAGAGATGTAAAGAATTGCGTAATCATCCATGATATATGATGTCAGCTTTCTACTCTTAGTTATTACCTTGTAGTAAATCTAAGAACTACGCTCATGTTAATTGGGAAGTGTAGAGATTACTTGGGTAAAACTCTCAAGGCTTGTCTGCATGAACATGTAATACCAGTAACCGGTTCCTATAAATTTCGACCTTGAGCATGTGTTGTATCTATACACATCTTTCAGCCTGTATTTAAGTCACAGGCGTGGCTATTTCATATTAACCCTTTCTTATACACTTCCCCTCTTGCCGGTTAAGATTGGTACTTATCTAGTAGAATAACTATAAGATGAGTCTTGCTGAAAATCAATAAAGACAACTTAGAAATAACAACTCTATGTGACTATCAGTCAAATCTTGGATTTATCATGATTAAACATCTAATTGTTGGAATGCCATTGACCTGATTGACAAAACATCAACTTTCATGATTTCATATTGCATATCCAATCCGCCTATAAGAATCTCCAAAGACCACACAAAAAGGAATTCAAATGCTTCAATCTTTCCATGCTGTAAATTTGCTTTCTTCAGAGATGGCCAAAAAGAAAACGGTGTATATTTGGGGTTTGACTTCTTTTGTTATAATCTGCAGATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAATTTG</genome_strand>
        <mrna_strand>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG..........................................................................................................................................................GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG....................................................................................................................................ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331964" ref_strand="+" ref_description="SGN-U331964        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctttctgctatgcttatgctattataggatataggagagtgactgtaaacacacaacttccaccctcttggctgtagtttgagcttgtatatgtgagaaatttacaagaaaaaaacgagatttcaaaaagaattcaaatcaacaatttttctgcacaaaacagggaaagagaatgaactagaacaaagcggatttttttcattaatagccgttacatgggaatacatcaaataggaagcttacacacacatagaccagccacacaactaaacacaacattacaaagtgaacaacggaagcattgaagactactagtgatacatgcaaacacaacaaagacactgagcataggagtagatctccactaaacaaagaaaaagaagaaacacactactttgcgtctacagacacttatttaaaccttcttaaactccaaagagtcgactgactctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="41936" stop="42988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42234" g_stop="42688" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U331964" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42234" e_stop="42688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGCTATGCTTATGCTATTATAAGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATATGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAAAATTCAAATCAACAAATTTTTCTACACAAAATAGGGAAAGAGAATGAACTAGAACAAAGCGAATGTTTTTCATTAATAGTCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAATCACAACATTACGAAGTGAACAACAGAAGCATTGAAGACTACTAGTGAAACTTGCAAACAGAACAAAGACACTTAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTATAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCAACTGACTCTTA</genome_strand>
        <mrna_strand>CTTTCTGCTATGCTTATGCTATTATAGGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATGTGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAGAATTCAAATCAAC-AATTTTTCTGCACAAAACAGGGAAAGAGAATGAACTAGAACAAAGCGGATTTTTTTCATTAATAGCCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAAACACAACATTACAAAGTGAACAACGGAAGCATTGAAGACTACTAGTGATACATGCAAACACAACAAAGACACTGAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTACAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCGACTGACTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329130" ref_strand="+" ref_description="SGN-U329130        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>taaggagctgttgaatgcgttgttccaccagctccggaaaaacagcaggcacatgctctaaaaaagcatgaagcgtttgctgacgttcgcgcctttcattttcaacatttagaattctttgattaatttgagaaagtctttcagtggtagctggatccatatctccctttgctttgccaaatagagaaagaagcttctatttataggcgttggaggcccttaaccctttcttattattagtaagataggttgtcttggttccgtaacatggttcaaacctggcttttcatgaatatggaaccccatccactagatttaagtgcgctgaataattgtcctttcctcgtacgcatttgagtactcaaggccccctttcttttggcgggtatcgccacgtggcttaatcccggatcactccttaaggaataggacacaataatatagcgcacatcagagaagagagtaccccctttattataagacaggccccccgcgtcctttcttaagagatggagcaatcgtcactcgacagctcanaactgaccagtacaaaaccatgtgatctgtcctcgtttacgtaccccactggcactagcctaacgccctgcctactcgtctttaactggcttatttgtacccagctacatgatggaagtcccctcggccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="42487" stop="43754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42787" g_stop="43454" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U329130" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42787" e_stop="43454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGC-TTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCTTTCTTATTATCAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGAAACCCCATCCACTAGATTTAAGTGTGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGACCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCATCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCAATACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCATCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</genome_strand>
        <mrna_strand>TAAGGAGCTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAGCAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCGCGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTGGATCCATATCTCCCTTTGCTTTGCCAAATAGAGAAAGAAGCTTCTATTTATAGGCGTTGGAGGCCCTTAACCCTTTCTTATTATTAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGGAACCCCATCCACTAGATTTAAGTGCGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGGCCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCGTCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCANAACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCGTCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333267" ref_strand="+" ref_description="SGN-U333267        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tataaaatacctaataactcatatcatatgatacttatcatataaaattaatacctaacaataaatattatcatatacttgatctaaggttcataatcagtcttagtggtagcagcttccaagcatgatatgttaactatatatccctaatgcccttatcacttgttcttctgcttttatctttcttagccaggaagcttttttacccattccttctcatcctttgtctgactttctgtaggtaactctatctaattcactctctttcttctcgctcgtatcgtatactttttcttgttcaaagcgtatccgcactgatgaagtggaatataaatacctaatatcatatgagtcttactatataaagaattaacacctaacaagatatatttatcatatactataaaatacctaataacacattatgattacctgcaagaaaagggaatgtataatagtaataagcggcctgcctgctaaccaaactgcgtaaccaaagcgactccttgttggtggttgataggtgtggtccgattcacctatgtcagttcgaacttggcgggtcgttcgttcgtgtggagaatctctctcgttactcaggatttctctcagttgatccgatgcgtcatagatagaatggagtgggctatacgccgacccacgttaaaagctttcttctcttatgagatttcgattgaataaacaatggttatttcaaacaccgtctactgtcccaccaactgatcagtgggttcatgccgcacagaaaccgagacctgagaaggaggctgtaggagagagtccagcataacagaaatcatctaagctgacaaggacccagaaaaggaggatgctgaggaagaaggtaatggaattgaaaatacagactgaagcagagaagaaacagaatgttggtctgatggtaaagtacccagcagaaggtaaggctgggaaagaccacaagaagctggagaagggacaggcctcgtcaacggagttttctgatgagctttctttcagaaggcttggttccggaagatgacctgatggaggaagacttgaaggttggtgagtcaagcagtcagacccaggttaaagaataaagaaaatgagccaaagtttcaagttctgttaggtaacttaccggataaggtggattgcaagatgatcctgactttgccaagagagttcatggcaaaaaccaatcagaatgaatctttggaaagggatgtggtggatactcagtaagcttgccatgaggtagtgatgccaaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="43792" stop="54347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44092" g_stop="45135" g_length="1044"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1068" r_length="1068" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45136" i_stop="53838" i_length="8703">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53839" g_stop="54047" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1069" r_stop="1278" r_length="210" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U333267" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>1253</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44092" e_stop="45135"/>
          <exon e_start="53839" e_stop="54047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAATACCTAATAACTCATATCATATGATACTTACCATATAAAATTACTACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGACTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATTCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAGTTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTAATGAAATGGAATAGAAATACCTAATATCGTATGAGTCTTACTATATAAAGAATTAACACCTAACAATATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAAGAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTGTTGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGTGTCATAGATAGAATGGAGCGGGCTATACGCCGACCCACGTTAAAAACTTTCTTCTCTTATGAGATTTCAATTGAATAAACAATGGTTATTTCAAACACCATTTACTGTCCCACCAACTGATCAATGGGTTCATGCCGCACAGAAACCGAGACCTGAGAAGGAGGTTGTAGGAGAGAGTCCAGCATAACAGAAATCATCTAAGCTAACAAGGACCCAGAAAAGGAGCATGCTGAGGAAGAAGGTAATGAAATTGAAAATACAGACTGAAGTAGAGAAG----A-AA-------C-------------CCCAGCAGAAGGTTAGGCTGGGAAAGACCACATGAAGCTGGAGAAGGGACAGGACTCGTCAACGGAGTTTTTTAATGAGCTATCTTTCAGAAGGCTTGGTTCCGAAAGATGACCTGATGGAGGAAGACTTGAAGGTTGGTGAGTGTCACGACCCAAATCGAGCCTCGACTGGCACCCACACTTACCCTCCTATGTGAGTAAACCAACCAATCTAAACCTTAATCATTTCAATATAATATCAACAGAAAGTAATGTGGAAGACTTAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAATTCTACAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAAATTACTAAGCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGTCGGAACTTCAAGGCATCGAGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGTATTAGCTCACCCTGAAATCTAGTGTAATGAAGACTGGCTAGAGTTGCGGATGAGTTGAACTTGACGGTACGTTTGCAGCACTCCACAAATAACAAAGAAAGAAACATACAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATCATATCATAAATCAACTACAATACTCAATCTGTAGCAACAACATGTACAAGAATCTTTGACAAATAACGTCAAGTACACTCATGAGGTCTCAAGCCTCCATATCATACTCATTTGGGAAATAAGTTCTTTTCATTAGAATGTATTAACTTAATTCCAAGATTCATTATCTTTATTCCTCTTGTGTCGGCATGTGACACTCCGCTCCCCTACTACTATGTGTCGGAACGTGACACTCCGATCCCCTAATTCTACCTGTCGGTTCGTGACACCCGATCCCTTAGTTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGCTCCACTAATATCATTCTATTAATTCATCAAGCCTTCTCTTATACCAAGGCATCATCATCTCATTACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATCAACAAGGGGTTTTCAAGATTGGAGTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTCCATCACAATTATATAATCATATTCATGCAAGCATATAATTAAGCATATAGAAAACTTTACAATACAACCTAACACATATCAGTCGATATTAAGATTTAACTACGAATAGTATAAAAACCATAACCTACCTCCACCGAAGAATTTTGATCAAGCAAGCAATTTCTCAAAGCTTTGTTTTCTCTTCGTTTCCCTCTTTCTCGATCGTTCTCTCTCTTTCTGTTCTTTTCTTTCTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGTATAAAAGATGGTGAATTAACCCATTAATTAATTAAAGGTTAACTCTTTTAACCCCCAATTAATTGAGTTATTAATATTAAACCACTAACTTTATAATTATCAGCTGGAATAGTCCAAAACACCCCTTAAAATAATTACAGAAATCCGACCCAGCGTGGGATTACGCAGCCTGTGACGGGCCATCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCCATTCCATTAAAGGGTCTGTGATGGTCCGTCGTACCCACGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTCAGTACCCAATTTTCAGAATTCTAAGTATTTTGGAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAAAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCATAAGAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAAAAGGTGTGGGTATCTTTCTTGCATGTCAGCCTCTTTCTCCCAAGTGGCTTCTTCAACGGGTCGATTCTTCCATTGAACTTTGATGGATGAAATCTCCCTTGACCTCAACTTGCGAACTTTATCTAAAATTGCAACAGGCTCCTCCTCATAAGACAAATTTTCATCAAGCAGCACTGAATCCCAACGAATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATAGACACATGAAATACCGGATGCACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATATACCTTGGGCTTAGTTTATCTCTTTTACCAAACCGCATCACCCCTTTCATGGGCGACACCTTCAGCAAGACTTGCTCACCCTCCATAAACTCCAAGTCTCTAACCTTTCGATCTGCATATTCCTTTTGCCTACTTTGCGCCGCTAAAAGCTTTTCTTGAATAGATTTCACTTTCTCTAATGAATCCCTCAAAAGGTCAGTACCCCAAGGTCTAACCTCAAATACATCAAACCAACCAATGGGAGACCTACATCTCCTCCCGTACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAATTCTATAACACATGCGTGAAGTATATCCTCCAACACTTGAATCGTTCTCTCAGACTGATCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCTAACCTAGTACCCAATTTCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCAAAAAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCCGAATGAAATAAGCAGACTTAGTTAATCTGTCTACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCAATCTTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCTGGGCCTCTGGTGTTCGTACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCCACAATGTCGCGCTTCATCCTACTCCACCAAAAGTATTGCTTTAGGTCACAGTACATCTTGGTTGCACCAGGATGTATAGAATATCTGAAATTATGAGCCTCTGTAAGAATAGTGTGGATCAAATCATCAACGCAGGGTACACATACCCTCCCCTTGATTCTCAAAACACCTTCCTCATCGATTGTTGCTTATTTAGCCTCTCCTCGCAACACTTTATCTCGGATCTGAATCAATTTCTCATCATTAAACTATTTCCCCTTGATCTTGTCAAGAAAAGAAGATCTCGCCTCCACACTGCAAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCGTTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACTTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTTTACTTAAGGCGTCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCGTAGTCTTCAGTAGTTCCATCCATCTCCTATTTCTCAAATTCAAATCTTTTTGAGTAAAGACATATTGTAGGCTACGATGATCTGTGTATACTTCACACTTAACTCCATATAGATAGTGTCTCCATTGCTTTAAGGCAAACACTACCGCAGCCAATTCTAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTGCCTTGAAGCATAAGCAATTACTTTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTAAGGATTAATGCAGTAGTCAACAATGTCTTGAGTTTCTGAAAGCTTTTCTCACATTCGTCCGACCATACAAATGGAACATTCTGTTTAGTCAAGTTCGTCAATTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGATCTCCTAGGAAAAGCATAACAATGGGCCCTATCACCTGTCTTCCCGTTGCCCCTACCATGTTGCGCTGCAGTAGTTCCCATTTGTCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGGCCACCACGTCCTTCAGAATAGCGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATAAGTCCAGTCTCCCCACATCGATAACACTCCCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGAACGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAAACTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAAACCTTTTTGATGTCGTTGCAATGGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAATAACCGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTACAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTTTATAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAATACTGTAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAGTGAGGCATCCATGCGGGGAGACACAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCGCTAAGGTAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTCCCCATCCTCCCCTTCTCTTACTACTTCCTCAGTCGGTGGAAGAGTCACCGCCCTAGTACCAGATGGGCCTGGCGTTCGTCCTCTTCCTCTAGAGGACGTCCTCCCGCGGCCTCTTGCCACTGCTCCTCTTTGAGCTACATTCTAAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGTGCAGTCGTTGTTGCTCTAGTTCTAACCATCTGTGAAATAGACTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCTCTACCGTTCCTTAAGACTCTACTAAACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGAGCTGCGACTGACACCCACACTTAATCTCCTATGTGAGCAAACCAACCAATCTAAACCTTAATCATTTCAATATAATATCAACAGCAAGTAATGCGGTAGACTTAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAACTCGACGACTATTATTATCCCCAAAATTTGGAAGTCATCATCACAAGAACATCTATCCTCAAATTACTAAGCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATTTCGGAACTTCAAGGCATCGAGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCTAGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAACTTGACGGTACGTTTGCTGCACTCCACAAATAACAAAGAAAGAAACATACAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTACATATCATCGGCCAACTCAAAATAGAAAACAGTATATATTAGATCATATCATAAATCAACGACAATACTCAATCTGTAGCAACAACATGTACAAGAATCTTTGATAAATAACGTCAAGTACACTCATGAGGACTCAAGCCTCCATATCATACTCATTTGGGAAATAAGTTCTTTTCATTCGAATGTATTAACTTAATTCCAAGATTTATTATCTTTATTCCTCTTGTGTCGGCACGTGACACTCCGCTCCCCTACTACTATGTGTCGGAACGTGACACTCCGATCCCCTAATTCTATGTGTCGGTTCGTGACATCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGATTTGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGTCACCCGCTCCACTAATATCATTCTATTAATTCATCAAGCCTTCTCTTATACCAAGGCATCATCATCTCATTACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATCAACAAGGGGTTTTCAATATTGGAGTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTCCATCACAATTATATAATCATATTCATGCAAGCATACAATTAAGCATATAGAAGACTTTACAATACAACCTAACACATATCATTCGCTATTAAGAGTTAACTACGAATAGTATAAAAACCATAACCTACCTCCACCAAAGAATTTTGATCAAGCAAGCAATTTCTCAAAGCTTTATTTTCTCTTCGTTTCCCTCTTTCTCGATCGTTTTCTCTCTTTTTGTTCTTTTCTTTCTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGTATAAAATATGGTGAATTAACCCATTAATTAATTCAAGGTTACCTCTTTTAACCCCCAAGTAATTGAGTTATTAATATTAAACCACTAAATTTATAATTATCAGCTGGAATAGTCCAAAACGCCCCTTAAAATAATTACAGAAATCCGACCCAGCCTGGGATTACACAGCCTGTGATGGGCCGTCTTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCCATTTCATTAAAGGGTCTGTGACGGTCCATCGTACCCACGACTGTCCATCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTAGTACCCAATTCTCAGAATTCTAAGTATTTTGGAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAGCAGGTCGTTACAGTGAGTCAAGTAGTCAGA-CCAGGTTAAGGAATAAAGAAAATGAGCCAAAGTTTCAAGTTATGTTCAGTAACTTACCGGATAAGGTGGATTGCAAGATGATCCTGACTATGCCAAGAGAGTTCATGGCAAAAACCAATCAGAATAAATCTTTGTAAAGGGATGTGGTGGATACTCAGTAAACTTGCCATGAGGTAGTGATGCCAAAAGTT</genome_strand>
        <mrna_strand>TATAAAATACCTAATAACTCATATCATATGATACTTATCATATAAAATTAATACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGTCTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATGCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAATTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTGATGAAGTGGAATATAAATACCTAATATCATATGAGTCTTACTATATAAAGAATTAACACCTAACAAGATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAATAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTG-TGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGCGTCATAGATAGAATGGAGTGGGCTATACGCCGACCCACGTTAAAAGCTTTCTTCTCTTATGAGATTTCGATTGAATAAACAATGGTTATTTCAAACACCGTCTACTGTCCCACCAACTGATCAGTGGGTTCATGCCGCACAGAAACCGAGACCTGAGAAGGAGGCTGTAGGAGAGAGTCCAGCATAACAGAAATCATCTAAGCTGACAAGGACCCAGAAAAGGAGGATGCTGAGGAAGAAGGTAATGGAATTGAAAATACAGACTGAAGCAGAGAAGAAACAGAATGTTGGTCTGATGGTAAAGTACCCAGCAGAAGGTAAGGCTGGGAAAGACCACAAGAAGCTGGAGAAGGGACAGGCCTCGTCAACGGAGTTTTCTGATGAGCTTTCTTTCAGAAGGCTTGGTTCCGGAAGATGACCTGATGGAGGAAGACTTGAAGGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCAAGCAGTCAGACCCAGGTTAAAGAATAAAGAAAATGAGCCAAAGTTTCAAGTTCTGTTAGGTAACTTACCGGATAAGGTGGATTGCAAGATGATCCTGACTTTGCCAAGAGAGTTCATGGCAAAAACCAATCAGAATGAATCTTTGGAAAGGGATGTGGTGGATACTCAGTAAGCTTGCCATGAGGTAGTGATGCCAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="48830" stop="50142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49130" g_stop="49842" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49130" e_stop="49842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="49422" stop="50776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49719" g_stop="50476" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49719" e_stop="50476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="49822" stop="50752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50122" g_stop="50452" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50122" e_stop="50452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="51953" stop="50799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51651" g_stop="51099" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51651" e_stop="51099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGGCCCATCTGGTACTAGGGCGGTGACTCTTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGA-AATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGTCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTACAGTATTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTATAAAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327646" ref_strand="+" ref_description="SGN-U327646        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: hAT(evalue: 8e-28, score=126)">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="80719" stop="81964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81019" g_stop="81664" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U327646" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81019" e_stop="81664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTATACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAATGCTTTTGAGAGGTTCGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCT-CTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTAAGGAATGTCTCAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTG-C--C--TACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328477" ref_strand="+" ref_description="SGN-U328477        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttgtgtccaagattggcttagacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatctatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatctcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="81678" stop="82882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81978" g_stop="82061" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82154" g_stop="82211" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82303" g_stop="82562" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="374" r_length="232" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="445"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U328477" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81978" e_stop="82061"/>
          <exon e_start="82154" e_stop="82211"/>
          <exon e_start="82303" e_stop="82562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTCTGTTATATCTTGTATGACATGCTTCTTTTTATTAATTATAGAGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTGGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</genome_strand>
        <mrna_strand>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTA---TTG-TTG-T-TTGTT---A-TTG--TTGAAAGTAATCTCAT-------G---A-AAG--T--CA-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328777" ref_strand="+" ref_description="SGN-U328777        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | cellulose synthase, catalytic subunit, putative, similar to cellulose synthase-1 (gi:9622874) and -2 (gi:9622876) from Zea mays | chr4:15640626-15646671 REVERSE | Aliases: F8B4.110, F8B4_110(evalue: 2e-26, score=113) genbank/nr: gi|49615363|gb|AAT66940.1| CesA1 [Acacia mangium] (evalue: 1e-28, score=127)">
      <seq>cgattagaatatcagagaaagaaggtgaagtagaggagtgatgttcagttgaggaaaatgcactgtttcttcacattggcttaacccctatcaagattgattaagctgtgttttaaggtaccctctgtttctttgaggagaagaaatggaggcaggtggtggaatggtagctggatctcacaagcgtaatgagttggttaggattcgacatgattctgatagtgggccgaaacccttgaagcctctcaatagccaaatatgccaaatttgtggtgatactgttggttcgactgctagtggtgatgtattcattgcttgtaatgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="86126" stop="88535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86426" g_stop="86651" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88095" g_stop="88235" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="367" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U328777" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86426" e_stop="86651"/>
          <exon e_start="88095" e_stop="88235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGGGTATCATTCTCAAATTCTCTGCTTTATCAATTTTTTTTTTTGTTCTTGATTCAATACACTTGTTTTAGATCTGATTTTGATGAAATTCTACATCTTATCTGGATTTAGGTGTTCATGTTGACTCAGATTTCTGATAAAGTTTTGATCTTTTTGTCTATTTGTACCTTAATTTAGTTTTCTTTTGGAGCATTTTGGGTTTTGAGTTAGTCTTCTCGATTCAGTGTTGGGGTTTAGATCTGACCTGGTGATAGTCTGTTGTTGAGATTTGTGATAAAGTTTTGATCTATTCATCAATTTGGACTTTAAAGTTTTCTATTACTACTTCTTTAAGCATATTAGGGCTTGTAATTTGGTGGTTGAAGTAGAGTGAGTTCTTACACCTAGACTGGGGTTCTCCCATGAATTTAGAAGTTTATTATGTTAATCTTGTTTTAGATTTGATTCCTATATCAGGATTTGAGTACTTTTTGGAATGAAATGGATGTATCAAGATTTGAGCTCTCTATAATTATTAACATTTTGCTTTTTCCCCTTTCATTCACTTTTCAACACCCCCACCTCCCATCTGATGTGGTTGGACATCTGATGCATGATCAAATTAAATTTGGGGCCCAACATTGGGTGTAACGGGGTCTTACTATAATACCATGTGAAAATAGGCATTGGCTTTACTCACTCCTCCAAAGCTAAGCCCAAAAGGGAGGAGGATTGTCCAAGCCCGATACGAGACCATCCATCTCATTGATCACCAATGTGGAATAACTTTTTAACTCTTCAACATATATATATATATATATATATATATATATACCTGATGTTAATTTGTGACGGAAAGTTCTTCAAAAATATAATTTTTTTGCTGCTACAAATTTGAGCAGTTTTGCCTCTTGTGTTATCCTAATGTAGTAACTGATGGCTGATTAGGAGAAAAATAAGCATGTTCTATTTTGGGGTTTCATTTTAGATCCACATATTAATTCCAGAGTATGGATCATGAATATTTCATTGATCTTTCCTTTTATGTTTGGCATAAGAATGTCAATCAAAATTGAAGTCTATATATTTGGTTTAAGGCCTGCATTTCACATTTCGAGCATTCAATTCCTTCTTGGATGAACTGAGATGCAATTCTTCCTAAGCACTTTTATGGACAAATATAAGTTGGTGAAATTTTTCAATGTCAAAAGCAAAAAGATAATCGCTTCTAAACAGACTTGTCTAGTTCATTCACTTTAAGAGCCTTCTTGGAATGGTTGAATCTACTGATTATTAGTTTCCAGTACCCTCCATCCAAATGAGTAAATGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCTAACGACTCCTCTGCCAGTAGTTTATTAGACTGAAGCGTGAGTAGGTTTGCATGTATCTATTGGTTCATCTTAATTCTGTTAATTTAAGTGGACATTTTGGTGCAGCCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</genome_strand>
        <mrna_strand>CGATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325581" ref_strand="+" ref_description="SGN-U325581        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | cellulose synthase, catalytic subunit, putative, similar to cellulose synthase-1 (gi:9622874) and -2 (gi:9622876) from Zea mays | chr4:15640626-15646671 REVERSE | Aliases: F8B4.110, F8B4_110(evalue: 1e-98, score=355) genbank/nr: cellulose(evalue: 1e-107, score=392)">
      <seq>tgagtgtgcctttcctgtttgccgggcttgttatgagtacgagcgtaaagatggaaatcaatcatgtcctcaatgcaagaccagatacaagaggttcaaggggagtccacgagtggatggagatgatgacgaggaagatgttgatgatatcgacaatgagttcaattatgctcaaggaaacagcaaggccagacagcaatggcagggtgatgatgctggtctctcttcatcctctagacacgaatctcagcaaccgattcctcttcttacagatggccagccagtgtctggtgattttcctagtgcaacaactgatacacaatctgtaagaagtatgtcaggacccttaggccctggagacaagcattcatccctgtcttatgttgatccaagacagcctgttcctgtaagaattgtggacccctcaaaggacttgaattcttatgggcttggaagtgttgactggaaggagagagtagagggttggaaactgaaacaggagaaaaatctggtgcattcgacaaacagatattctgaagggaaaggcggggacattgaagggacagggtcgaatggagaagagctacaaatggctgacgatgctcgccagcctatgagccgtgtggtgcctattccttcatcccaccttaccccatatcgggttgttatcattttgcggttgatcatcttgggatttttcatgcaataccgtctaactcatccagtgaatgatgcatatcctccgtggctagtatcagttatttgtgaggtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="87890" stop="90554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88190" g_stop="88290" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88400" g_stop="88581" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="283" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89293" g_stop="89410" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="401" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89508" g_stop="89697" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="591" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89698" i_stop="90069" i_length="372">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90070" g_stop="90254" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="776" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U325581" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88190" e_stop="88290"/>
          <exon e_start="88400" e_stop="88581"/>
          <exon e_start="89293" e_stop="89410"/>
          <exon e_start="89508" e_stop="89697"/>
          <exon e_start="90070" e_stop="90254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGGGTGAGTGAGTTCAATATTTTTTTCTGTTACTTTTTTGGTTCCTTGCGCTTTCGTTTTTGCTTCTAAACTGAACTTTATAAACTAAGTCATTGCTTGGTCAATGTATTAGGGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCAGTGAGTGATACTGTGCTTATGTCGTCATTTTGTGCTTTGGCTGTATTTTTATTTCATTAAGTTGTAGTTGTAGAACCTCCTGGGAGGTCCTTGATTTGCATCTTTAATTGGGAGTGAAGGGATTTCTGCAGGAAACTCAGTTTTGAATGCTGATAAAAAGTGTGGCTTAAAATGAATTGATTTTTAATGTATTATTAAAATAATCACTTGTTTAGTCAATCAGACATGGTCTTGGGTCCTGCAAGTGTCCCATGAAGCAAAAAGTAGCCATCGTTTTAAGTCCTTTTCCTTGCACTAAACTTTACAAAAATCGCTACAAATTTTGATAGTTGACTATCCTGCTTGTCTTTCTGATTCTTTTTGAATAAAAACTTATGGACATCTGACTGTGGGTTTACGTCTGATGGATGAAAATTGAAACAGACCCTGTTTCAATTAGATTGGCTGCGTTCCGTATACTAGTATTATCCACTGGGAGATTTTCCTGCTTTTGTGCTTCGACTTTGAAAAGCAGATTTGGAGCATGGTGTTATATATGGTGCATGAACAAACTAGTGTGTTCATTTGATAATTTATTAACCAAATATGATGGATTTTTGGTGAAGTCCTTACCTATTGGCATGATATTACTTTTTGTATTTCTCTGGCAAATGTACTGAGCTCTTCTAAGCATTGTTATTTTCTAAAAAAAAGTCTTTCTGCTTGTCTTAGGTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTGGTACTGGCCTACTTGAATATATTCTTAGTTGGCTGCAATAATGTATTAAAACACTTTGTTCGTCCTCTAAACTTCTGATAATTTCATGCTTTTGCAGTTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAATGTAAGCATCTTATTGAATAAATGAAAAATATTTAGGGAACATACGATATATTATAGATGACTGGATCAAACTTTTGCTTCTTCCTTTAATAACCCCAGCACTGATATCCATCTCTCTCTCACTGCAAAAATCTTGTAATACTTGGTTTGAGAAGTGAAAAGTTTTTTAAAAAATCCTTTTTAATGTCTTGACACTGTTATGATGTCCACTGCACCATCCCTGCTTAAATTTGTAGTACTTAGTTTGGGAAATGAATTTCCTTTCTATTGTCCTGGAACTATTTCTCTGTTTATTAGTCAATTTTCTTGGTTTTATAATACTGCAAGAAAATTTAATTTAAAACTATGATACTTATTGGTTTTCTCTTGACAGGGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGT</genome_strand>
        <mrna_strand>TGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG.............................................................................................................GGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG.................................................................................................TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAAT....................................................................................................................................................................................................................................................................................................................................................................................GGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCCGTGGCTAGTATCAGTTATTTGTGAGGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316878" ref_strand="+" ref_description="SGN-U316878        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | cellulose synthase, catalytic subunit, putative, similar to cellulose synthase-1 (gi:9622874) and -2 (gi:9622876) from Zea mays | chr4:15640626-15646671 REVERSE | Aliases: F8B4.110, F8B4_110(evalue: 0, score=1091) genbank/nr: gi|33186655|gb|AAP97497.1| cellulose synthase [Solanum tuberosum](evalue: 0, score=1209)">
      <seq>tcaaaagatagattatttgaaggacaaggttcagccttcttttgtgaaagagcgcagggcaatgaagagggagtatgaagaatttaaaatacgaatcaatgctcttgttgcaaaagcgcaaaaaaatgcctgaagaaggttggacaatgcaagatggaacagcttggcctggaaataaccctagggatcatccaggaatgatccaggtctttttggggcacagcgggggccttgatactgatggaaatgaacttcctcgtctggtgtatgtttctcgtgagaagcgaccaggttttcaacaccacaagaaagctggagctatgaatgctttgattcgtgtttctgcagttcttaccaatggagcatatcttttgaatgtcgattgtgatcactactttaacaacagcaaagcacttaaagaagcaatgtgtttcctcatggatcctgttcttggaaagaagacatgctatgttcagttccctcagcgatttgatggcattgacttgcacgatcgatatgctaaccgaaacattgtgttctttgatatcaacttgaaagggttggatggccttcagggtcctatgtatgtgggaactgggtgttgttttaacaggcaggccctttacgggtatgatcctgtattaactgaggctgatttggagccaaacatcattgttaagagctgttgtggtgggtcaaggaagaagggaaggagtggaaacaagaaatacattgataagaagagggcagtaaaaagaacagaatccactgtcccaattttcaatatggaagacattgaagaaggcgtagaaggatatgatgaggagaagtcactgcttatgtcacagaggagcttggagaagcgatttggtcaatcaccagtgtttattgctgccacatttatggaacaaggaggcattcctgcatccactaatcctgcatctcttttgaaagaagcaattcatgttattagctgtggctacgaggacaagactgaatggggaaaagagattgggtggatatatgggtctgtcactgaagatattttgactgggtttaagatgcatgcacgaggatggtattccctctattgcatgcctcctcgaccagcgtttaaagggtctgctcctatcaatctttctgatcgtttaaaccaggtgctccggtgggctttgggttctgttgaaatcctgttgagtaggcattgcccaatatggtatggctacagtggcagattgatgcttctggagagattagcatatattaatacaatcgtctatcctctcacatctttacccttgcttgcttactgtacgcttcctgccatctgtcttctgaccggcaaatttatcattcctgagataagcaactatgctggcatgtggttcattctactctttctttccattttcgcaactggtatattggagcttaggtggagtggtgtgagtattgaagactggtggagaaatgaacagttttgggtcattggtggtacatcggctcacttgtttgcagttttccaaggtctcctgaaagtgcttgctgggattgataccaactttacagtcacatcaaaggcaaacgatgaggatggagattttgctgagctttatgtgttcaaatggacaactctccttattcctcctacagcaatccttatcgtgaatctggtaggaattgtggcaggtgtttcgtatgccataaacagtggatatcaatcatggggtcctctattcgggaagttgttctttgccatttgggtcattgtccacttgtaccctttcctcaaaggtttgttgggacgtcagaatcgtactcctaccattgtcattgtctgggctgttctccttgcatccatattctcattgctttgggtgcgtatcgaccccttcacatcagacgcgtcaaagactgctgcaagaggtcaatgtggtatcaactgttagtgagaagtttatttattttaaggtaagatgtttgcttatccattctcatgttgtatataagaaaactatgccggttcggttaagtcctgtagtcattttgtaccaatgttgtaagtcggaaggagtgtgatgcatgaaagacatcaaaactcatggatttacgcctttttgttgtaaaaaaattaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantcttgggggggggggccccaaccccttttcccttaaaagggggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="+" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="90458" stop="108676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90758" g_stop="90824" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90825" i_stop="91231" i_length="407">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91232" g_stop="91369" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="206" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91370" i_stop="91457" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91458" g_stop="91583" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="332" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91796" g_stop="92008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="545" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92114" g_stop="92381" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="813" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92775" g_stop="92971" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="1010" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93085" g_stop="93435" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1011" r_stop="1361" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93890" g_stop="94650" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1362" r_stop="2122" r_length="761" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94651" i_stop="96034" i_length="1384">
            <donor d_prob="0.257" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96035" g_stop="96042" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="2123" r_stop="2130" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96043" i_stop="108322" i_length="12280">
            <donor d_prob="0.825" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="108323" g_stop="108362" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="2131" r_stop="2170" r_length="40" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2232" polyA_stop="2241"/>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="+" ref_id="SGN-U316878" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2169</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90758" e_stop="90824"/>
          <exon e_start="91232" e_stop="91369"/>
          <exon e_start="91458" e_stop="91583"/>
          <exon e_start="91796" e_stop="92008"/>
          <exon e_start="92114" e_stop="92381"/>
          <exon e_start="92775" e_stop="92971"/>
          <exon e_start="93085" e_stop="93435"/>
          <exon e_start="93890" e_stop="94650"/>
          <exon e_start="96035" e_stop="96042"/>
          <exon e_start="108323" e_stop="108362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAGGTACAAATGAAACTTTAATAAGCTGAATTTAATGGGAATTTATTGGTATGTAGGTGACTAGGCATCAGGTTTTAGATATAAAACTTCTGTTTGATGGTAGTTGAGTTTTATTCACCAAATGCTCCATTAGTTAAACTCTATTATTTTTGATAGGATTGTGGAAGGCTGAATGTCTAAGATCCCTTGATAAATCAATGTATACAGGATAAGTAGGTCTGGAGATAACTTTAGCCTGAAAGTTTGTTGGTTACCTGCGGAGTGATTTACATAAATCATTTGATAAGTTCTACTAGTTGGGAAAGTTCAGGCCTCTCTGTTGCTAGGATTTATGCTGATAATACTGCCAGAATCCTTTTTCTCTCTAATAAGCAAACAATTACAATAATCTGATAATTTTGGCATTGCAGAGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCGC-AAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAGGTATTCTTTATTTATCTTATAATTATGTGAAAGTTGATTCACTGTACATCTTCTCCTCTTTTAGTTAATTACTTCGGATTGGATGTAGGTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTAGGCCACTGATAATTACAATATGAGATCTTCCAATTTTATTGAGCATGCCATCAAGTTGAATAGCTCTAATTTATATACACACATTATGGTTGCGATGATGGAGAATGTCTCATAGCATACTTAAATCATACAGCTCTCCTTATGCCATCTGATATTATTATATTGTGTGATGTTCCATTTATTTAAGCTGTACCTTCAATTTTCTGCAGATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGATGTAAGTCTCACATACACATTCCCCAGATTGTTTATCAACCATATTTGGTATGTCAGAGTCATGTTTAAGTTAGAGTGCTCATTTCATTATGTTCATGTTTCTCAGATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAGGTAATGTCCTTAGAAAATCTTGGTTCATCCTCTATGGTGATATTAAGTGTTTTACTTAGATAAGTCAATATCGTCTTCAAGCATCTAACTTCTGATTACAACTAAGATATACTTAGGAAGTATCATACTTTTGACATACTCTTAATGTTCTTTTCTATCAGATATATGATGGGTTCCGAAGTGAACTGAGAAAACCTTTTGATGATGTTTGAAAAGTTAGTTTAGCTGAATGTGATTATTGAACTCTCAACTCTTCTTCTGTTCTGTTTTTATTTGACAAACCGATTTGTTCAGTCCTCCCAACTTCTCAACCTGTCTCATACCTGAGGCTGCTGAATATATGAATACCCTCATCACAGTGTTGTTTGTTGACTGTTTTCTTTGGATTTGCAGGATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAGGTACAACAATGTTGAGTTATATACTGTTATGACTTAGATATCCATTTTGCTTGGCTGTATTGATCTTACTGTGGCACAAAAACCCTTATTAAGCATTTTTGGTTTCCTATCAGATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAGGTATGTTAATAGTCTCATTCAGATTGCTTTATGCTGTTAAGTTTAAATAGTTGATTGAAACATTGAATACCAACAGAATGATTTCCATGCCATACGTGTCCAATTAGAAAAGGCTGGGTATACTAACTTCTCACACTGAAATGATCCCCTGGTGTTGTGAAAAGGGAGCCTGTAAAGAAAAAAAAGAGTTGAAAATAGGAAAAAACAAAGAAGTAAATATTCAAATTGTTTCCTCTACCTTATATTATCCTCCTCTTAGTGCCTGTCAAAATTCTGTTCCGTGTCTTCATGCTGAGAACTATTTTGCTGTTCTGATTTTAGTCTTTTCTTTGGATGAGACTGTTTGTTGTTCACCCCTTGAGATATATGTATATACTCAAGCTTGCCCATGATTATGGTCTTGATCCCCTTAGCTTGTATATACATCTATGAATAATTCTGAATTTACCTGCAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTTGTATACCTTTTGCCCTATCTCACATGTTCATGCAAAAACTGTGACTTATGATGTGAAGAATTTTAAATTTAATTTTGTTATCTTATCGTTGGTGCAGAAGTATCACTGATATGTTTGTGAGTTTGAGAATGGAGCTGTTAATGTGTTTTTACTTTAACAAACTTTTCCCATGCAAATGCTTTCATTCATTCAATATGTCCACTAATATGGTAAAAAAATGTAAAAGAAGGAATTTGAGAGGCAATTGGAAAATCCTTCCATAATTGAACCTAGGGTTGGTTATTAGTCAAAAACAAATCAAATAAAAAATAATGTAAATTTATTGGTTTGGTTATTTTTTGTTTGGTTCGATTATTAAGCATACATAAAAATTAAGGATATAATTCATTCAATACCTGAAAAAAATGACAATAATCATGCACAGAATCCTTCTGATTCAACTTTCCCACTTCCAACTTGGTTGGCAAAAATAAGCTTCTCTGAAGCCCCATTTACCTTCATTTAAATTTAATTTAATTGGACGCTTCACAACTTGCTTGAGCATGACACTACTTTATAAGTTTGACATTCCACTAAGGAAAAGCAATGTAATTCATCAAATTTACCAATGAAGTGGACGACAAGAATGAATCTAACATATGGAAAGTAGCAGACCAATCATTGACACAGCTTTCACAATCACAAAGCGGCAATGGCAATATCTTACCATCAAACTGCATTTCATTATCTTGATTCAGTAGTGAAAAAAGGACTAAAACCAGTATTAGCATTTCTCACCTGACAAACCAGGCTCAATCCAAAACAAAATTTCCAGCGTCTGGAAAATGGAGCAAGATAAATAAAACTCAATCGTATAAAGAGATTTTCCCTACCCTTTGCCTAGCATATTTCTGAAAGAGCTCCTTTACTTCTCATTTTCTGCCTCAACCAATATCCTCTTGCATGCTTCATAACACATGAAAGATATTCCTGCGGCAGGAACTAACTTCATGCAGCTGGGACCAAGCCCTTTATACAGACCCTGAATCCCATCCTGTTCCAGTATACTCACAAGAGCATGAATTACATTCTTGTAAACTGCTCTTCCACTAACAGCACCCACCTGCATGTGCTTACGAGCCACCTCTAGAGGAAAGGTTGCAGTGCTAGATATAGCACCAGCTGCTGATCCAATTAGAAGAGTCTCTATGTTTCCAATCTTCTCTTCCTTGAAAATCTTTCTGTAGGCTTTCCGCAATGAATCATAAGCAAAGTAGTTTGTGGCCGCATAGGGAATGACTCCTATAACACTAGGAGTGAGACCTCTATAGAGCTCAGCAGGCCCACCCTCTTTCAATATTTTTACAAATGCATCAAATAAGCCATTGTAAACTCCTCTCTGCAGATAAAAAGGTTGGCATTCAATCAAACAAGTACAGTTTTCATAAAAAAGTTTAAGAGAAAAACCTTCAAGCTGTCAACAAGAACTTCATTTTTACCTGAATCGTCAACCGAGTCTTCACTAGCTCAAGTGGATATGTCAGTAAGGTAGAGCTGACTCCGGCACAGGCTCCTGCAACTAATGAGGCAGGAATTGGAATTTTGGACTGGTTACCGGGTTTAGATGACAAGTTCTTATTAACAGTATCATACACAAAAAGCTGCATTAAAAAAAATTATATCAGCCATGACAAGCCACTTTTAGTAGTGAAGCATTCTCCCATCCGTAGTTGGAAGCACAATTGTCTGACTCAAAAGGTTAACTCAGCTATTGACAATTTATCCATACACGTCAAGTAACAAACATTAACACAACATGGAATTACCATATAGTTGTAGCTACAACAAAATCCAGACAAAGTAACAGAAAGAAACCTGCTAAAAATCATTCAGCTAGCAGGAGCTGGTCTTTCAGAACTCTAAATCAATTAACAGAATTGCACCACAGTACTTGTCAACTTCAGTAATTAAGTAACACTAGCTTTCTCCACAAAACAAGCGACACATTGATATTTAAGTAGACTTTACATCTATGTCATTTGGCTACGTAAATAAAGTAAAACAGAGTGTAAGGGTATGTCAAAATAGTTAGACAAGAAAGCCAGCAGTGCAGCAGAGGAAATATTAGCAGGTTTCACCAATAAAAATCTATTCAACAGTCACTTACATACTGATTTAAACTCTAAGGTGGGTAAACAGATGAAAGGCTGCATTGCCTTCATGAAAAAATTGGAAGAGAGCAGGGAAGTTTTGAAGAACAATTTAAACAAAAACAGTTCTAGTCTCTCATTTCCATTTCCTCTTAAGGGAGTCAAAAATAGTTACTCTGAAGTAAAATCAAGTATTCTGATGCATACATGTCATGCACTGTAAACACTGAAAATTTCACAGGCTAGAAAAGTAGAGAACTGCATCAGAGGAACAATAAGAGAATTAAACAGATTTTTTGGCTTTGCATCGAGATATTCATGCAACGCTAATCAGTCAAAATGGAAGAAAAAGTCATTACAAAAGAAGAGCTTCATCTGTAGTGTTAACCAGACTTGATTAATGATTCACAACCCAAAGGACCAGTAGCATCAAAATATAAGGAAAAAATGAGCCACCATGCCGTTTTTCCTAAACCACCAACCCATCAAAATTAAAATTGCCTCCGTTAAGCAGTTTCACTCCAACAACAACCAAACTACTACTATTACTATGCCTCGATATCTAGCTCATTCGGTTCGGCTATGAGAAATTCTCATTAACCATGTTGCTCAATTTAGACCTAGCAATCCAATAAATCAGGTTAACTCCAATATACAAAAAAGAAAAAAAATGAGGCTAAACAAGTAATTTCCAAGGCACTAATTGAGATTATTGCATATAATTCTCAGATTGAAAAAACCTTTGCTAACAGTTCCTTACAAGAAGTTATTGCATACATGAAAAGAAAATCAATCAGGTCGGAAAATAATGGGACACAAAACACTTGCTAGATTTCGAGAAAGTTCATTACTAAAGATAAGTGTTGATAGATCCTATCTTGTCTCTTATATTCCTGATCCACTGACCAAAGTGCCAATAGCAACAAAAGTTTAAAAGAAGAAAAAGGGAAGTGGCATCCTCAGATGTTTAGTCCTACAGTCCCTCGAAACAAAAAGCATGTCTCCATCAACCTAACATTAATAGAGAAACAAGGAACATACATGCACAGAGTAAGGATGAGTTTGAATACTCATCTATTAGGTAAATGCTGCAACAGCTACTAATAAGAGAGGCAGCAAATACAAAGTATTAACATCGAGATTATTGGTGATCTGTTATAGGGGAATTTTTCCATCAACCTAACATTAATAGATGAAACAAGGAACATACATCTACTTCAATTAAAGAGAACAGTCATTTTCTGAATGATGACAGCTTATGTCAGTATTATTATGATTGAAGTCTGAAACAAAATTTCAAACTTTCTGAGACTTCAAATCAGCTAAGCAAGGAATTCATACAGTAAAATAGAACAACTTCTAATGAGATAAACCATTTTTATCAATGACAAACATTATCAGCATTAAAAGGGTCTAAACTCAATTTTACAAAATACACTTAAATTTTACCTCTACAGCTTTGCTAGGGGCAACTCTAATCACATTAACAAAGTTACCCCTAAACAATCCAGTCCATCCTTCAGTCTTCATGATACTATTGAACACCTCAGTACTAGAATGTCCACTACTTCCCACCATCAAATGTGTTCTTATTGTCTCCAACGGAGCTACAGCAGTTCTAGATATCGCCCCGGCGATCGCACCACTTATTAACCTCCTTAATGAAGGATTTGAAACCTTAAGCTTAATCTTTAGCCCACCTTTCTTCTTCTCCTCCTTTACAACCCCTTCTTCCTCCCCATTGCCTGCAATCTTAAACCCCTCGGAGAATGATAAATATTTCAAACACAAATCGGAATAAGGTAGCTTAAATCCACCATTTTCATCCCGGGAATCAGAAGGATTAGGTGATGAAACACCAAACCCCATACTTCCCATCTGACCAACTGATGCAAACAATCCACCAGGACAAAAGTTTGAATCTTGGAGACTCCATTGTAGCCCCAAATGAGAAATAGACATACTCCCATCCTTTTTACGCTCAAACGCTTGTATATCCCTTCTAGCCATCAATCTAGACTTCCTCACAAAAAACCAAAAATTACCCTTTTCAATGTAGAGCTTGAGAAAACAAGAAAAAACTCACAGACAATTTGGGACATTCAAAGAATCGATTTTTACTAAGTGGGTATATTAAAATCCCATTCTTGAGAAGAGGGGTTGTGAGATTAATGAGTAAAGATCGAATTTTTGAAGAGATATTGATAATATCTTGGGGGATGGGAGGCGATATATGCTATGTTTGTTAGGATGAAAAATGAGTAACAGTGGTGACTCTGTTCCTCTCCCTTCCAACCCCAGAAAACGAAAGGAGGAAAAGATTTGTAGAAATCACACCTCTAACATATAATAACCCCTCTTTTCCCTATAGGTTTAGGGTTTTTTACACCCATTACACCTCTACTACTTGTAAAATATATATTTTCTTCATATTATTTGTATTTTTTAATGATTATAAAATAAATCTATAATTTAAAGGTATTGAGCGTATGGATATGTTGCTTAATATTGTGGGTATTTTGTTTTTTCCTGAAAAATTATATAAATATACAACTTAAAGGTTATAATCTCTAAAAAATTTTGTCCTTTAAAAAAATTATAAAAATTCTCTCTCAAATACATCATTATCTCCTCTTGAATACATTTTTATCCCTCTCGGATATGTCTTCATTCTCTCATATACGTCCCCATTCACATCAAGTAATGTATCATATCGGGAAAATGTACTCGATGCAATGAAAAATTTGGAATTTGTAATTGGAGAAACTTTTTGTATAGGATGTAATTAACCCCCAAATGTATGAGATTTTTGTAAGTAATAGCATCTTTTTGAGAAAAGTTCGAAAACAAATCTAAATTTGACACAAATTACTAGTTTCAACTTCTAACTATTAAAACCCTTAAAAACACTAATTTACTTGACTTACTAAACTTAAATAACCATCAATCTACTAATATGAGTGAAATACATTCCTTAAATTCTCGTCAAGTTTAGTGGTGTTTTCAACATTTTTCTCAATTTTTTATTTATAATTCAATGCTCCACAAGAATTTGAGACCACTAGCTATACCATATGACAAATTGAGTGTGCATCAAAGTTTAGATTTATTTAGCTAGAATGATAAAATAACATTATTCACACTATAATATTTTACTCTTTTTTCTGAATATTTTTACCTTTTTTAATACCTTTTAATTAAAAAAATATATTTTAAAACAAAAAGAATATTATAAACTTTTTAAATTTCTGACCAAAGTTTCTGGCCATTTAACATTACCCTTTTGAAAAAAATATATTCATCTTTTTCCCTTGACATTCAATTTTAGGTTTATATATTTACTTCTTATTAGTTAGATTCCATGTTATCGTCTACTTCCTTCGTTTTACAAAGAAGGACCTACTTTGAGTTGAAACGGAATTAAAAAAAAAAAGATTTTTCAATTTTGTGGTTTTAAATTAAAGTTATGTTAAATGTACTACTCCCTTCGTTTCAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAGGAATGATCCCTTTCCTTTTTTATTAACATTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAAGACATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAAAAAGTCTTCTTTCTTTTCTTAAACTTCGTTGCAATTCAAACTAGGTCATCCTTTTTAAACGGAGGGAGTAAAATGTTTTTAATCTTGTGACCTTAAATATGTCACGTGAAAAGTTGAAGCTATATGACTCTACAAAATGTGTTCAATTCGAATTGAGACTCTAGAAATGCGTTCAGTTCTCAAATATCTCAAACATTTCACAAATTCATGAAATATTCATATAGAGGTCATAGTTCGAGAAATATGCTACTTACGGCCCTCGAATCATGAATAAATCTTATGAGAGAAGAATTAAGAAAAGAACAAAGTTGTATACCCGCATTGTTTATCAATAAGATATTCATGTTTTTTCAGATTTTATTTGTATGGATTATTTATTTTTTAGATGTTTAAAATTTGTTGCAAACATGATATTTTTTTTGAAACAGACTAAAGAAAAAATAAGATCATTCTTTTTTAAATAGAGGAACAATTCTTTTACGTGATATTTTTTCTCCAATCAAATCTATTCACCTATGTAAATCATTTTAACATGTCCGCATGACCTACTAAAAGACTAGTATTAAAAGCTTTATTGTTCATTGACGATCAATATAATTCATCATTCAAATATTGTCCAAATTTAAATTCAATTTTTGCTATTGTGATAGGGTAAAACTTATTTCAATAATTCTTATTTTTTGTTCTGATTTTCTAAACTTAAAAATTACAAATAAATAAATAAATCAAAAGCAGAAAATTCAAGTCCTTAATTTCTTTTAATTTGGTAATATAATATGTAAATAAATTTTGTACTAAGCTATTTTTTTCGTAGAGAAAATATGAACATGATTTTTTTTAGTCGAATGTGATTTTTTCATTCGTTATTGATATTCACTTTGGAGTCCAATTATATTTGAATTTGTGTTGGATGTCACATATTAAAGAGATTTTCTAACAAATGCAACCACATATACCGATGGATTCAAACTCAAAATTTCAAGTTAAGAATGAAATAATACTTGTCACTCCATGATTACTTTGATTTTGTTGTGATAATGCGTTGAGCTTTCCCCTTTGTGTCATTAGTACTTCTGTTCTTAAAGCCCTTTCTTCATTTGATTATTTTTCATTTTTCAAGTTAGTTAGTACTTTATTGATTGAATTTAGATCTTTTCATTTAATGTTTTGTTCTAATTTGCCTTTTATTTCATGTAGATATCTATTTTTTTAATCATTGAGTTGTTAGTTTGGTTATTTCTATTGTATGGTCAATTTTGTTCCTTTTATGTATCTATAAACCTAAAAGGATCGTAGTTTGACCCAAAACATCTTTTGTTATTGTCCTAATACAAAGCATGTTTTAACAAAAATTTAGTTCGAGATATTTTTATCAAACTACTTTTTTTTAATGATATATTGTAACTTTAAAATTCATTATTACTCTATTGTTTTAGGTAGTTATTTCATAATAAGAGGAAGATGAAAAAAAGTAATAAAATTTTCTTAATTCGCTAAAATAAATAAGTAAAATAAAATAAAAGAATTTAATATATGTATTATTTATGGTATTTGTTAATCCTTGGTAGAATTTTTAGCCAATATATGTACAACTACAGCTTATTCGATAGTTATAATAAATACAATTAATAATGACATTAGAATGCATAAGTTATTAATACACGAATAAATATGATAAAATCAAATATTAATAATAGATATTTCTACCATAACTAATCGTAATATAATGAATCCATACTTATTAAAACACCATATTCAATACTATTATTTTTATATAATTGACCAAATGACGTTTTCTGGATTAGTACTACTTTGACCAATATTATGCTGATGTTTATGATAAAGGTGATTCATTCATTAGTATAAGATTTTTAGTTGATTCACCTACTTAGCTCAGCCTCCATTAATTTAATTAATTATGTGATTAGTGCAATGACATCTGTAAAGTAGCCATGCTAAATGATTAGCCTTTAATAACACTTTAATTTAATACAACTGACAAATTTTAATTTTTATATACTGTAACACACAAGTACGATAAGCTACGGTGCAAATTATTTGTCTCACTTGGATCGAGTTTAAAACTTTCAACCAAAAAAAAAAAAAGTTTAAAACTAATCTTCTCCCTTTCACCTACCACCAATCTATGCCTTTCACCTAACTTAATTTCATAAGTAGTTAAACAAAGTATGTACAAGAGCATATAAGGGTCCAAGTCCAGTCCCAAAGAGTAAGCAATCTATTTGAGGATCTAATCTTGGAGGTCCCACTTAGTTATTGTGTTGCATAGATTTTTGGCCTAATTTAATCTCAAACACTTGGAATCCAATAGATTTCACATAGGATTTGTTTAGAAGGATCTGATAATTAGATTTGGTGTAATTTAACTATCTGTCTTGTATGGTTGGTCAGGTTATTACTTGACTAGCAGGTAATTCATGTAATTGGTAGAGGGTAATTACATTTTACAATTCACAGGGAGAGACAGTGAATTATTGAGTACTTGATTACTTTTTTATTTCTATCTTTATTTCTTTTTTGTTTTATTTTTTTACTTCTACTATTTAAGTTCTTTTTTACTCCCTCCGTCTAGTATTGTTTGTCATAGTTTCTATATTTAGAGTCAAACTAAAAAAATTTTGAGTAACATTTTAAGATATATTTTTTCATCATATTAATATTTAAAAAATTGCAATTTATAGTACTTTTCATATAGTTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATGTGATCTAATTTAACTTTGAAAAATAGTCAAATTGACTTTCGAAAAGTCCAACATGACAAACAATACCGAACGGAGTGAGTAATTTTTAATATTCTATTTTTTTTGTTTTTTAATTGTATTTCATTTTCTTATTATTCTCAACCTTACTTTACATGATTCTATGCAATTTTTTTGTATTATTTATTTCTTTATGTCATGCTTATTTCTCATTAACATGATTTTGTTCGTATTCTAATTTTTAAATTAAAATAGAATTTATTGTTAAGTAAGGTTATAGACTTACGTTTTCTTTTTTTTTTAAAAAAAAAATTATATTCATATACATTGAAATATGCTATAAGAGTATTTGGTTAAACTTTTTTGTTTTGAATTTGTAACTTATGTTATATTTTCAGTTTCATTTGTTTTAGTAATATTGAATTCACATTGCACGTCATTTTTTAATTAGACTTGATAGATTATCTTTTTGTCAAACATTTATTAATTTATGACATTTTATTTATAGATTAATCTTTTTATCAAACATGCATTTCACGGTGTTCGTAGAAACTTCATACTTCTAGCTTTTATGATCAATTCAATTGAAATATATTAATTTGAAAAAATATAAATCAATTACTTTTCATAATGTAAGTTAAAAATATATGTTTATTAATTAATATATTTTCAAAAATATATATATATATATCTCAAAAATTTAATTTAATGTCATTTATAAAGTCTTTTATTTGTCTAGTATAAATTTTAAATAATTAATTTTTATTTTTAAAATTTAATATAATTTTATGATTGCAATTGTGCATCCAAACAGAACATGTGTAATTACATTGTGGCGTTCAAATAGGACATGTGTAATTACTCTACGACAATCAAACAAGTCAGATTACTAGGCTGGTAATTACTACCCTAGTAATTACACCAATTCCAATTATCATGGAACTTTCCAAACAGACCCTTAAGGTTTCAATATTTCTTCAAAAATTGTTTGATTTGAATTTCATCGAATTGGTTTCCAAAGTTTTAAAAAATAATTATAAATTTTAATAACAACTTCTAATTTTATTTTTAATGACCTTTCTCATGGTTATAATTGTACAAGATCCAGGGTCGTCTCAACAAATATGTGGGCCTAAAGCCAAAATTTATTGAGAGGTTTTATTTTTTAAGTTTTTGTATGTAAATCGAATAACTATAATATATTCAATTGTAATCGTACAAGTGAAGTCTCAAGAAGGTATGATGTATGAAAATTTTATGAAGTAAGAATGTAAACAATAAAAATCTTCAATAAAAAATAATAATATAAAGTTAGACTAATAATATCTAGCTCAAGAATTTAAAAGGTTTATATAATAACATTGAAATAGTTGCGTAGAATTTGATATAATGATTATTAAAATAGTAACAATATGTTGAAGTGCTTAAAATCATAAGGATACACCAAAAAATAAATTTGATCTTTTTATAAATATATAAAATACAATGCAAAAGGTTTGGTGAAATTTAGAATATTCAGTAATGAGAGAATACAAATATAAACGAAAATAAAATAGATAAATTTATAAGAATAATAATGCGGATTCATGATAATCATCAAGATATAAACAAGTCAATAAAATGGGTAGCAATGTAAGAAAGGATGTTACAGTATTAACTAAACACTATTTCATTTCTCAGTGTTACAATGTTATGTATCTATACACACACACATTTTTCGGCACATACGTTTCACGTGATTACCAATTCAAAAAGTATATGTTATAGTAAATAGTATTTCTTATTTAAGCGAAAGTTTGAATAATAAACTTTCCACAAAATAATATTATACATACATACATACATATATATACATACATACATACATACATATATATATATATATATGTATGTATGTATGTATATATACATATATATATGTATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATGTATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATTTTACGCGAACCTATGAAGATGGTCAATAAAAAAATTTATTAGTTAAATGCATATATTTGTTTCAATTTGTTGAGGTTCAATCATGTAATTGACTGTATCTCAATAATATTACCTTATAAACGATATTTGTTGCGTAATTTTCTTGTCATCTAATGAGTGTGTTTGTATGTGTATTTCACGTTAAACTGTTCAGATGTCATATGAACATGTGAAGAGAACAACTACATTTTATTTTTTAGAAATAATTTTTGTATATTAATTTTTATTAAGGTATAACATTATAAATGATATTCTTGTTATTGGCTCTCATATTGACTTCTCAATTGACAGTGTAAATAAATCAAAGCTAGTTATTTGACTGTCCATAGTTAACTGAGAAATGTTTCTTCTTCTTTTTTTTTACCGAAAAAACTAAAAGCTGAAATTAAATAATATATTCTGTGAAATCATATATAAAATCACATGTTTATCTTACACCCAACAAAGATGTTGTTCATATACTTGTAAACAATTTTCAATTTTTTCAATAAAGCATGATTCGTCCAAGGAAAAATAACAGCATTGTGTTATTACATATATAGGGGCAGTATAATAATATGAAAAATTATTGGTCAAAAGTTAAGATAAAAGAAGTTGAAGATAGAAATAATCAATATATATATATATATATATATATATATATATATATATATATATAAATGAGGATCTTCAATCAGCTTATGTGGCATGCCTCAATGATGAGAAAAATATATAATTTTTATTTTAATAAAAAGAGTTTTTTAGATTTTTTTTTACACAATAATATTATGTGTATATATATATATATAGATATTTCTATTAATAAATTAGTTAATGAGCATTACACCTTCTAACTCCTAACCTTTCATATTCATAACCTTCAAAATATTTAATAAAAAAATTATAACTCCTAAATATTACACCTATAAAAACCCACTTTGAGATATTCCATGATGGTCATTTTCTTTTTATTTTCCTTATTCTTCATTTTTTATACCATTGATTTGTTAATTTTTATCTTTTTTGTCTTCTTTGATCTGATTTTTGCAGGAGAGGGATGTATAATGAAAAATGTTATATATTTTGCATATTTTAATTTTGTGAGGTAAAATGATTTGATATGTCTAATTATCATTAGCACTTTGTTTAGTTGTAATTACATATATATTTGATATTATTAGGTTGAGTTGTTGATGATACAAATCATTATTCTTTTATAGAAAAAATAATTTGTTCATTTTTTTTTCGCTTCTCTTTGTAGTTTTTTGAGATTTTTTTTCTTAATCTTGTAGTTTCTACCGACACTGATTGTCTTTATTCACTTAGTAAATTTGAAGAATCATATATTTTAAATATTTTTGCTTGATTAGTTAATTAATTTTATGTATGTTTGTTGGTATTATTGTATGGATTGTTTATAGTTCTCCGGTTAAATCACTAATGTAACAAGAGTTGATTGGTTCTTTATCAGATTAATTAGTTAATTGAAAAAACGTCAATATATCTTATTTCTGATTGCGTCTAACAATATCCTCCTCCTCACTAGTTATGAAATTGTTATGCAAATATATAATAAATATAAGTAATAAAAAAAAGTAATATATCATATCTCAATATAAAGTAAATAAAATACTAAATATTAAATTCAAATATTATATAGCTAAGAATCAAATAAATTGATTCCTGATATAGTTTCGTATCTCACAATCACATAACAATGATATGGTAAAAATACATAATTTTAACGTTGCATTATTTTTTATATTATTCATATATAATTATTATTTATAGGCCAAATGTTTCACAATTTTGAGAATTTAATCAGCAAAAAATTAAATATTTTTTAATTTTATTTTAAAATATTCGTACGATTACTTTTTTTTTTGTTGATAATTTCAAAAAAAATTCTATTCCTTTTGACTAACTTTTTAATTCTGTGTCCCTTTTTAAATTTATTTTTAATTAATTTTTCTCTTAATAGATATCTCTCCTATAATATAAAATAAGAGAAAAAGTATATATTGTTCAAAATAATAGTAATTACTAAAAATAATGTTTATTAGAAGCATATTTGGAGACTTTTAATTATTTGAAAATTTTAAAATGAGGTAAAAAGAAAATATGTCATATAATAAAATAAATCATAAAAATGGTGGAGGATTTTACTTAAACATATTTTTGTTTATTAAAAAAACATGTCACATTTTTTTTTACATTTTTCTCTTATTTTTATATATTTATTTTTAATTTAATTTTTATCATAAACTCACACCTCTTCATCTTTCAAAACCTCTATACTTGATTAATACTTATTAGTAATACCTATAACTTCCAACTTTATACCTTCATAACCCCAAATTACTTAATGTTTAAATTTGTGACATCTTAAAATCACATCAAAAAATATTTTTAACCAAATATATTTATGTTTAGCTTAATTGTCCTCTACTTTAATCTTGTAATGCAAAATTTATCGACAAAGACTTCTTTGTATAGTTATTTTTACTTCTAATAAGAATGATACAAAATAAGATTTATAAAAGCGAATAATTGATTTGTTTTTTTTTCCACGAAATTATAAGAGCAAGATCATTACTTAAAGTAAGACAAAAACAATTCTTGAAAACATTAAAATGTATTTGTAGATACGCTTAGCGGCGGGAGATAATCAAAATTATTATGAAGTTATTTTTAAATTTTAAATAAAATATGAATCATGAAAAATATAATAAAAATTAATTAAGAGAATTCATTTAAACATTTTGCTTAAATTAATAAAAAGCTTAAGACAAGCTAACTTGATTATGTTAAGATTTGATGCTAATTGTTACTGTTTTACAAAAATATATATAAATTAGTAAAAATACTAAAGACGAGCAAACTTCATTCTCTTAATTACGATGCTAATTGTTTATGTTTTCTTAATAGAATTAAATAAGCAAAGACTAAAAAATAAAAAAAAATAAAAAATAAAAAATAAAAAA</genome_strand>
        <mrna_strand>TCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCGCAAAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAG........................................................................................GTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG....................................................................................................................................................................................................................ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT.........................................................................................................ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG.................................................................................................................ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322001" ref_strand="+" ref_description="SGN-U322001        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT4G32400.1 | Symbol: None | mitochondrial substrate carrier family protein | chr4:15638631-15640471 FORWARD | Aliases: F8B4.100, F8B4_100 (evalue: 3e-133, score=472) genbank/nr: gi|77416925|gb|ABA81858.1| brittle 1 protein-like [Solanum tuberosum] (evalue: 0, score=684)">
      <seq>aggtgtgatttctacaaatcttttcctcctttcgttttctggggttggaagggagaggaacagagtcaccactgttactcatttttcatcctaacaaacatagcatatatcgcctcccatcccccaagatattatcaatatctcttcaaaaattcgatctttactcattaatctcacaacccctcttctcaagaatgggattttaatatacccacttagtaaaaatcgattctttgaatgtcccaaattgtctgtgagttttttcttgttttctcaagctctacattgaaaagggtaatttttggttttttgtgaggaagtctagattgatggctagaagggatatacaagcgtttgagcgtaaaaaggatgggagtatgtctatttctcatttggggctacaatggagtctccaagattcaaacttttgtcctggtggattgtttgcatcagttggtcagatgggaagtatggggtttggtgtttcatcacctaatccttctgattcccgggatgaaaatggtggatttaagctaccttattccgatttgtgtttgaaatatttatcattctccgaggggtttaagattgcaggcaatggggaggaagaaggggttgtaaaggaggagaagaagaaaggtgggctaaagattaagcttaaggtttcaaatccttcattaaggaggttaataagtggtgcgatcgccggggcgatatctagaactgctgtagctccgttggagacaataagaacacatttgatggtgggaagtagtggacattctagtactgaggtgttcaatagtatcatgaagactgaaggatggactggattgtttaggggtaactttgttaatgtgattagagttgcccctagcaaagctgtagagctttttgtgtatgatactgttaataagaacttgtcatctaaacccggtaaccagtccaaaattccaattcctgcctcattagttgcaggagcctgtgccggagtcagctctaccttactgacatatccacttgagctagtgaagactcggttgacgattcagagaggagtttacaatggcttatttgatgcatttgtaaaaatattgaaagagggtgggcctgctgagctctatagaggtctcactcctagtgttataggagtcattccctatgcggccacaaactactttgcttatgattcattgcggaaagcctacagaaagattttcaaggaagagaagattggaaacatagagactcttctaattggatcagcagctggtgctatatctagcactgcaacctttcctctagaggtggctcgtaagcacatgcaggtgggtgctgttagtggaagagcagtttacaagaatgtaattcatgctcttgtgagtatactggaacaggatgggattcagggtctgtataaagggcttggtcccagctgcatgaagttagttcctgccgcaggaatatctttcatgtgttatgaagcatgcaagaggatattggttgaggcagaaaatgagaagtaaaggagctctttcagaaatatgctaggcaaagggtagggaaaatctctttatacgattgagttttatttatcttgctccattttccagacgctggaaattttgttttggattgagcctggtttgtcaggtgagaaatgctaatactggttttagtccttttttcactactgaatcaagataatgaaatgcagtttgatggtaagatattgccattgccgctttgtgattgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99418" stop="95021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99118" g_stop="98229" g_length="890"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="890" r_length="890" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96290" g_stop="96129" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1052" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96028" g_stop="95321" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1053" r_stop="1760" r_length="708" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-U322001" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99118" e_stop="98229"/>
          <exon e_start="96290" e_stop="96129"/>
          <exon e_start="96028" e_stop="95321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAGGTAAAATTTAAGTGTATTTTGTAAAATTGAGTTTAGACCCTTTTAATGCTGATAATGTTTGTCATTGATAAAAATGGTTTATCTCATTAGAAGTTGTTCTATTTTACTGTATGAATTCCTTGCTTAGCTGATTTGAAGTCTCAGAAAGTTTGAAATTTTGTTTCAGACTTCAATCATAATAATACTGACATAAGCTGTCATCATTCAGAAAATGACTGTTCTCTTTAATTGAAGTAGATGTATGTTCCTTGTTTCATCTATTAATGTTAGGTTGATGGAAAAATTCCCCTATAACAGATCACCAATAATCTCGATGTTAATACTTTGTATTTGCTGCCTCTCTTATTAGTAGCTGTTGCAGCATTTACCTAATAGATGAGTATTCAAACTCATCCTTACTCTGTGCATGTATGTTCCTTGTTTCTCTATTAATGTTAGGTTGATGGAGACATGCTTTTTGTTTCGAGGGACTGTAGGACTAAACATCTGAGGATGCCACTTCCCTTTTTCTTCTTTTAAACTTTTGTTGCTATTGGCACTTTGGTCAGTGGATCAGGAATATAAGAGACAAGATAGGATCTATCAACACTTATCTTTAGTAATGAACTTTCTCGAAATCTAGCAAGTGTTTTGTGTCCCATTATTTTCCGACCTGATTGATTTTCTTTTCATGTATGCAATAACTTCTTGTAAGGAACTGTTAGCAAAGGTTTTTTCAATCTGAGAATTATATGCAATAATCTCAATTAGTGCCTTGGAAATTACTTGTTTAGCCTCATTTTTTTTCTTTTTTGTATATTGGAGTTAACCTGATTTATTGGATTGCTAGGTCTAAATTGAGCAACATGGTTAATGAGAATTTCTCATAGCCGAACCGAATGAGCTAGATATCGAGGCATAGTAATAGTAGTAGTTTGGTTGTTGTTGGAGTGAAACTGCTTAACGGAGGCAATTTTAATTTTGATGGGTTGGTGGTTTAGGAAAAACGGCATGGTGGCTCATTTTTTCCTTATATTTTGATGCTACTGGTCCTTTGGGTTGTGAATCATTAATCAAGTCTGGTTAACACTACAGATGAAGCTCTTCTTTTGTAATGACTTTTTCTTCCATTTTGACTGATTAGCGTTGCATGAATATCTCGATGCAAAGCCAAAAAATCTGTTTAATTCTCTTATTGTTCCTCTGATGCAGTTCTCTACTTTTCTAGCCTGTGAAATTTTCAGTGTTTACAGTGCATGACATGTATGCATCAGAATACTTGATTTTACTTCAGAGTAACTATTTTTGACTCCCTTAAGAGGAAATGGAAATGAGAGACTAGAACTGTTTTTGTTTAAATTGTTCTTCAAAACTTCCCTGCTCTCTTCCAATTTTTTCATGAAGGCAATGCAGCCTTTCATCTGTTTACCCACCTTAGAGTTTAAATCAGTATGTAAGTGACTGTTGAATAGATTTTTATTGGTGAAACCTGCTAATATTTCCTCTGCTGCACTGCTGGCTTTCTTGTCTAACTATTTTGACATACCCTTACACTCTGTTTTACTTTATTTACGTAGCCAAATGACATAGATGTAAAGTCTACTTAAATATCAATGTGTCGCTTGTTTTGTGGAGAAAGCTAGTGTTACTTAATTACTGAAGTTGACAAGTACTGTGGTGCAATTCTGTTAATTGATTTAGAGTTCTGAAAGACCAGCTCCTGCTAGCTGAATGATTTTTAGCAGGTTTCTTTCTGTTACTTTGTCTGGATTTTGTTGTAGCTACAACTATATGGTAATTCCATGTTGTGTTAATGTTTGTTACTTGACGTGTATGGATAAATTGTCAATAGCTGAGTTAACCTTTTGAGTCAGACAATTGTGCTTCCAACTACGGATGGGAGAATGCTTCACTACTAAAAGTGGCTTGTCATGGCTGATATAATTTTTTTTAATGCAGCTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAGGTAAAAATGAAGTTCTTGTTGACAGCTTGAAGGTTTTTCTCTTAAACTTTTTTATGAAAACTGTACTTGTTTGATTGAATGCCAACCTTTTTATCTGCAGAGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTGAAA</genome_strand>
        <mrna_strand>AGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG....................................................................................................AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337494" ref_strand="+" ref_description="SGN-U337494        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|77416925|gb|ABA81858.1| brittle 1 protein-like [Solanum tuberosum] (evalue: 2e-42, score=175)">
      <seq>atcccccaagatattctcaatatatcttcaatgattccatctaaactcataaatctcacgacccctattgtcaagaatgggatcttaatatacccacttagtaaaaatcgattcttagaatgtcccaaattgtctgtgagttttttcttgtactctcaagctctacattgaaaagggtaatttttggttttttgtgaggaagtctagattgatggctagaagggatatacaagcgtatgagcgtaaaacggatgggagtatgtctatttctcatttggggctacaatggagtctccaagattcaaacttttgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0050P21-fqELJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0050P21.1" temp_strand="-" temp_description="C08HBa0050P21.1  AP009267.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0050P21 upload_account_name:japan">
        <position start="99300" stop="98384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99000" g_stop="98684" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0050P21.1" gen_strand="-" ref_id="SGN-U337494" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0050P21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99000" e_stop="98684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTG</genome_strand>
        <mrna_strand>ATCCCCCAAGATATTCTCAATATATCTTCAATGATTCCATCTAAACTCATAAATCTCACGACCCCTATTGTCAAGAATGGGATCTTAATATACCCACTTAGTAAAAATCGATTCTTAGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTACTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTATGAGCGTAAAACGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2571" PGL_stop="6118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2571" e_stop="2735"/>
            <exon e_start="2890" e_stop="3067"/>
            <exon e_start="3200" e_stop="3356"/>
            <exon e_start="5682" e_stop="6118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2571" e_stop="2735" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2736" i_stop="2889" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2890" e_stop="3067" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3068" i_stop="3199" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3200" e_stop="3356" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3357" i_stop="5681" i_length="2325"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5682" e_stop="6118" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2571" stop="2735"/>
              <exon start="2890" stop="3067"/>
              <exon start="3200" stop="3356"/>
              <exon start="5682" stop="6118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTGAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG : GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG : ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT : ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGACATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGAAGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTTGATGCATTGCATACTTGCTACTCTTAACCGTTGTCGGTTATATATTATCAGCAGAGAGTGAAGGATTGTGGCTAAGCTATTCTTAAAGTCACCAGCCTTTGGTAAGTTGCATGGACTAATCTTGGATGATATATGCTACAATTACCTATAACCTTTGCTAGCGTTCCCTAGTGAGTTGAAATCTTTATTAAAAACCAAATCGATGTACTGATAAGACTCGGTGTAAAAGAATTTGTGCAATTGAAAACCAATTAGGTACATTCAAATTTG</gDNA_template>
            <first_frame> L  F  *  I  K  Y  E  T  V  L  F  P  *  F  S  V  F  F  K  C  R  E  K  C  K  S  K  R  R  V  L  L  P  L  V  H  Y  L  Q  V  V  R  D  H  L  V  Q  L  Y  I  M  N  S  K  K  :  V  W  R  V  M  M  R  S  E  E  C  R  R  W  A  E  K  R  R  G  Q  R  Q  L  L  E  E  M  E  Y  R  P  P  V  K  L  N  H  Q  L  G  L  K  G  R  E  E  E  A  Q  L  T  K  K  T  K  G  *  K   : D  C  *  E  I  E  Y  Q  H  N  K  Q  G  R  G  R  K  H  I  *  *  I  W  K  Q  G  *  R  N  W  K  Q  R  M  Q  N  L  K  R  G  C  L  L  C  K  M  R  T  K  C  L  D  I :   Y  *  R  T  Q  Q  Q  V  H  R  K  G  G  S  R  H  M  I  D  L  M  S  I  C  Q  H  S  C  L  D  P  M  *  A  L  K  R  N  S  L  L  D  L  R  M  H  A  S  F  G  W  I  V  L  I  *  C  I  A  Y  L  L  L  L  T  V  V  G  Y  I  L  S  A  E  S  E  G  L  W  L  S  Y  S  *  S  H  Q  P  L  V  S  C  M  D  *  S  W  M  I  Y  A  T  I  T  Y  N  L  C  *  R  S  L  V  S  *  N  L  Y  *  K  P  N  R  C  T  D  K  T  R  C  K  R  I  C  A  I  E  N  Q  L  G  T  F  K  F  </first_frame>
            <second_frame>  F  S  E  *  N  T  K  L  Y  F  S  L  N  L  V  F  F  S  S  V  E  K  N  A  R  A  S  D  E  F  Y  C  R  *  F  T  T  F  K  *  *  E  I  I  *  F  S  F  T  S  *  T  Q  R  R :   Y  G  E  *  *  *  D  Q  K  S  A  G  D  G  R  R  S  D  G  D  N  V  S  F  W  K  R  W  S  I  G  R  R  S  S  S  T  I  S  W  D  S  K  E  E  R  K  K  P  S  *  Q  R  K  Q  K  V  K  K  :  I  V  E  K  *  S  I  S  T  T  S  K  G  E  E  E  S  I  F  D  R  S  G  S  K  G  E  G  I  G  N  K  E  C  R  T  *  R  E  V  V  Y  F  A  K  *  E  P  N  A  *  T   : Y  T  E  E  H  N  S  R  C  T  G  R  E  E  V  D  I  *  S  I  L  C  R  Y  V  S  I  L  V  *  I  L  C  R  H  *  R  E  I  L  F  W  I  *  E  C  M  L  V  S  G  G  L  F  *  F  D  A  L  H  T  C  Y  S  *  P  L  S  V  I  Y  Y  Q  Q  R  V  K  D  C  G  *  A  I  L  K  V  T  S  L  W  *  V  A  W  T  N  L  G  *  Y  M  L  Q  L  P  I  T  F  A  S  V  P  *  *  V  E  I  F  I  K  N  Q  I  D  V  L  I  R  L  G  V  K  E  F  V  Q  L  K  T  N  *  V  H  S  N  L </second_frame>
            <third_frame>   F  L  N  K  I  R  N  C  T  F  P  L  I  *  C  F  F  Q  V  *  R  K  M  Q  E  Q  A  T  S  S  I  A  A  S  S  L  P  S  S  S  E  R  S  S  S  S  A  L  H  H  E  L  K  E   : G  M  E  S  D  D  E  I  R  R  V  P  E  M  G  G  E  A  T  G  T  T  S  A  S  G  R  D  G  V  S  A  A  G  Q  A  Q  P  S  A  G  T  Q  R  K  R  G  R  S  P  A  D  K  E  N  K  R  L  K  R :   L  L  R  N  R  V  S  A  Q  Q  A  R  E  R  K  K  A  Y  L  I  D  L  E  A  R  V  K  E  L  E  T  K  N  A  E  L  E  E  R  L  S  T  L  Q  N  E  N  Q  M  L  R  H  :  I  L  K  N  T  T  A  G  A  Q  E  G  R  K  *  T  Y  D  R  S  Y  V  D  M  S  A  F  L  F  R  S  Y  V  G  T  E  E  K  F  S  S  G  F  E  N  A  C  *  F  R  V  D  C  S  D  L  M  H  C  I  L  A  T  L  N  R  C  R  L  Y  I  I  S  R  E  *  R  I  V  A  K  L  F  L  K  S  P  A  F  G  K  L  H  G  L  I  L  D  D  I  C  Y  N  Y  L  *  P  L  L  A  F  P  S  E  L  K  S  L  L  K  T  K  S  M  Y  *  *  D  S  V  *  K  N  L  C  N  *  K  P  I  R  Y  I  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2633" stop="2735"/>
                    <exon start="2890" stop="3067"/>
                    <exon start="3200" stop="3356"/>
                    <exon start="5682" stop="5726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRDGVSAAGQAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRHILKNTTAGAQEGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="42234" PGL_stop="42688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42234" e_stop="42688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="42234" e_stop="42688" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42234" stop="42688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTGCTATGCTTATGCTATTATAAGATATAGGAGAGTGACTGTAAACACACAACTTCCACCCTCTTGGCTGTAGTTTGAGCTTGTATATATGAGAAATTTACAAGAAAAAAACGAGATTTCAAAAAAAATTCAAATCAACAAATTTTTCTACACAAAATAGGGAAAGAGAATGAACTAGAACAAAGCGAATGTTTTTCATTAATAGTCGTTACATGGGAATACATCAAATAGGAAGCTTACACACACATAGACCAGCCACACAACTAATCACAACATTACGAAGTGAACAACAGAAGCATTGAAGACTACTAGTGAAACTTGCAAACAGAACAAAGACACTTAGCATAGGAGTAGATCTCCACTAAACAAAGAAAAAGAAGAAACACACTACTTTGCGTCTATAGACACTTATTTAAACCTTCTTAAACTCCAAAGAGTCAACTGACTCTTA</gDNA_template>
            <first_frame> P  S  A  M  L  M  L  L  *  D  I  G  E  *  L  *  T  H  N  F  H  P  L  G  C  S  L  S  L  Y  I  *  E  I  Y  K  K  K  T  R  F  Q  K  K  F  K  S  T  N  F  S  T  Q  N  R  E  R  E  *  T  R  T  K  R  M  F  F  I  N  S  R  Y  M  G  I  H  Q  I  G  S  L  H  T  H  R  P  A  T  Q  L  I  T  T  L  R  S  E  Q  Q  K  H  *  R  L  L  V  K  L  A  N  R  T  K  T  L  S  I  G  V  D  L  H  *  T  K  K  K  K  K  H  T  T  L  R  L  *  T  L  I  *  T  F  L  N  S  K  E  S  T  D  S   </first_frame>
            <second_frame>  L  L  L  C  L  C  Y  Y  K  I  *  E  S  D  C  K  H  T  T  S  T  L  L  A  V  V  *  A  C  I  Y  E  K  F  T  R  K  K  R  D  F  K  K  N  S  N  Q  Q  I  F  L  H  K  I  G  K  E  N  E  L  E  Q  S  E  C  F  S  L  I  V  V  T  W  E  Y  I  K  *  E  A  Y  T  H  I  D  Q  P  H  N  *  S  Q  H  Y  E  V  N  N  R  S  I  E  D  Y  *  *  N  L  Q  T  E  Q  R  H  L  A  *  E  *  I  S  T  K  Q  R  K  R  R  N  T  L  L  C  V  Y  R  H  L  F  K  P  S  *  T  P  K  S  Q  L  T  L  </second_frame>
            <third_frame>   F  C  Y  A  Y  A  I  I  R  Y  R  R  V  T  V  N  T  Q  L  P  P  S  W  L  *  F  E  L  V  Y  M  R  N  L  Q  E  K  N  E  I  S  K  K  I  Q  I  N  K  F  F  Y  T  K  *  G  K  R  M  N  *  N  K  A  N  V  F  H  *  *  S  L  H  G  N  T  S  N  R  K  L  T  H  T  *  T  S  H  T  T  N  H  N  I  T  K  *  T  T  E  A  L  K  T  T  S  E  T  C  K  Q  N  K  D  T  *  H  R  S  R  S  P  L  N  K  E  K  E  E  T  H  Y  F  A  S  I  D  T  Y  L  N  L  L  K  L  Q  R  V  N  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42787" PGL_stop="43454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42787" e_stop="43454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="42787" e_stop="43454" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42787" stop="43454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGAGTTGTTGAATGCGTTGTTCCACCAGCTCCGGAAAAACAATAGGCACATGCTCTAAAAAAGCATGAAGCGTTTGCTGACGTTCACGCCTTTCATTTTCAACATTTAGAATTCTTTGATTAATTTGAGAAAGTCTTTCAGTGGTAGCTTGATTTATATCTCCCTTTGCTTGCCAAATAGACAAAGAAGCTTCTATTTATAGGCATTGGAGGCCCTTAACCCTTTCTTATTATCAGTAAGATAGGTTGTCTTGGTTCCGTAACATGGTTCAAACCTGGCTTTTCATGAATATGAAACCCCATCCACTAGATTTAAGTGTGCTGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGACCCCCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTAAGGAATAGGACACAATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCATCCTTTCTTAAGAGATGGAGCAATCGTCACTCGACAGCTCAATACTGACCAGTACAAAACCATGTGATCTGTCCTCGTTTACGTACCCCACTGGCACTAGCCTAACGCCCTGCCTACTCATCTTTAACTGGCTTATTTGTACCCAGCTACATGATGGAAGTCCCCTCGGCCAAT</gDNA_template>
            <first_frame> *  G  V  V  E  C  V  V  P  P  A  P  E  K  Q  *  A  H  A  L  K  K  H  E  A  F  A  D  V  H  A  F  H  F  Q  H  L  E  F  F  D  *  F  E  K  V  F  Q  W  *  L  D  L  Y  L  P  L  L  A  K  *  T  K  K  L  L  F  I  G  I  G  G  P  *  P  F  L  I  I  S  K  I  G  C  L  G  S  V  T  W  F  K  P  G  F  S  *  I  *  N  P  I  H  *  I  *  V  C  *  I  I  V  L  S  S  Y  A  F  E  Y  S  R  P  P  F  F  W  R  V  S  P  R  G  L  I  P  D  H  S  L  R  N  R  T  Q  *  Y  S  A  H  Q  R  R  E  Y  P  L  Y  Y  K  T  G  P  P  H  P  F  L  R  D  G  A  I  V  T  R  Q  L  N  T  D  Q  Y  K  T  M  *  S  V  L  V  Y  V  P  H  W  H  *  P  N  A  L  P  T  H  L  *  L  A  Y  L  Y  P  A  T  *  W  K  S  P  R  P   </first_frame>
            <second_frame>  K  E  L  L  N  A  L  F  H  Q  L  R  K  N  N  R  H  M  L  *  K  S  M  K  R  L  L  T  F  T  P  F  I  F  N  I  *  N  S  L  I  N  L  R  K  S  F  S  G  S  L  I  Y  I  S  L  C  L  P  N  R  Q  R  S  F  Y  L  *  A  L  E  A  L  N  P  F  L  L  S  V  R  *  V  V  L  V  P  *  H  G  S  N  L  A  F  H  E  Y  E  T  P  S  T  R  F  K  C  A  E  *  L  S  F  P  R  T  H  L  S  T  Q  D  P  L  S  F  G  G  Y  R  H  V  A  *  S  R  I  T  P  *  G  I  G  H  N  N  I  A  H  I  R  E  E  S  T  P  F  I  I  R  Q  A  P  R  I  L  S  *  E  M  E  Q  S  S  L  D  S  S  I  L  T  S  T  K  P  C  D  L  S  S  F  T  Y  P  T  G  T  S  L  T  P  C  L  L  I  F  N  W  L  I  C  T  Q  L  H  D  G  S  P  L  G  Q  </second_frame>
            <third_frame>   R  S  C  *  M  R  C  S  T  S  S  G  K  T  I  G  T  C  S  K  K  A  *  S  V  C  *  R  S  R  L  S  F  S  T  F  R  I  L  *  L  I  *  E  S  L  S  V  V  A  *  F  I  S  P  F  A  C  Q  I  D  K  E  A  S  I  Y  R  H  W  R  P  L  T  L  S  Y  Y  Q  *  D  R  L  S  W  F  R  N  M  V  Q  T  W  L  F  M  N  M  K  P  H  P  L  D  L  S  V  L  N  N  C  P  F  L  V  R  I  *  V  L  K  T  P  F  L  L  A  G  I  A  T  W  L  N  P  G  S  L  L  K  E  *  D  T  I  I  *  R  T  S  E  K  R  V  P  P  L  L  *  D  R  P  P  A  S  F  L  K  R  W  S  N  R  H  S  T  A  Q  Y  *  P  V  Q  N  H  V  I  C  P  R  L  R  T  P  L  A  L  A  *  R  P  A  Y  S  S  L  T  G  L  F  V  P  S  Y  M  M  E  V  P  S  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44092" PGL_stop="54047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49130" e_stop="50476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="49130" e_stop="50476" e_length="1347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49130" stop="49842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49719" stop="50476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50122" stop="50452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCCACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTTGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCCGACCTCAAGTCAATCTTAGAGAAGACAAAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCAAAAACTTCCATCTTTCTTCTTCACAAATAACACCAGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATAGGGCGAGTACCCGGTTTAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAATTCACAGACTATCGAAACTGACTTAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCATAACACGAAGAAAGGAGATGATACAAACTGGATTGGAAGTGTAGTCACTCTCCCACACTAATGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCACAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAACTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCTAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  H  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  I  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  I  M  P  I  P  C  P  K  S  S  L  G  H  I  R  C  P  Y  F  *  L  M  I  T  R  P  Q  V  N  L  R  E  D  K  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  S  I  F  L  L  H  K  *  H  Q  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  R  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  F  T  D  Y  R  N  *  L  N  *  R  Y  L  G  S  I  I  P  E  M  C  Q  E  R  *  T  T  L  T  N  H  F  H  N  T  K  K  G  D  D  T  N  W  I  G  S  V  V  T  L  P  H  *  W  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  H  K  I  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  L  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  *  F  T  M  *  I  K  T  I  S  *  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  F  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  L  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  K  A  P  C  N  *  S  N  K  S  L  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  Q  K  L  P  S  F  F  F  T  N  N  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  L  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  Q  T  I  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  N  A  K  Q  P  L  L  T  I  F  I  T  R  R  K  E  M  I  Q  T  G  L  E  V  *  S  L  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  F  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  N  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  P  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  S  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  H  N  A  H  T  L  S  E  K  Q  S  W  A  H  P  L  P  V  F  L  I  D  D  N  P  T  S  S  Q  S  *  R  R  Q  K  H  L  V  T  D  R  T  S  H  *  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  K  N  F  H  L  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  *  G  E  Y  P  V  *  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  H  R  L  S  K  L  T  *  L  K  V  L  G  *  Y  H  P  *  D  V  P  R  T  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  K  L  D  W  K  C  S  H  S  P  T  L  M  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  T  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  V  I  H  N  V  N  *  D  H  *  L  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49857" stop="50102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGLRSMQKSISLSGGIPGRSAGNTSKNSQTIETDLIEGTWVVSSLRCAKNAKQPLLTIFITRRKEMIQTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49326" stop="49523"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44092" e_stop="45135"/>
            <exon e_start="53839" e_stop="54047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="44092" e_stop="45135" e_length="1044"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45136" i_stop="53838" i_length="8703"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="53839" e_stop="54047" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44092" stop="45135"/>
              <exon start="53839" stop="54047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAAATACCTAATAACTCATATCATATGATACTTACCATATAAAATTACTACCTAACAATAAATATTATCATATACTTGATCTAAGGTTCATAATCAGACTTAGTGGTAGCAGCTTCCAAGCATGATATGTTAACTATATATCCCTAATTCCCTTATCACTTGTTCTTCTGCTTTTATCTTTCTTAGCCAGGAAGCTTTTTTACCCATTCCTTCTCATCCTTTGTCTGACTTTCTGTAGGTAACTCTATCTAGTTCACTCTCTTTCTTCTCGCTCGTATCGTATACTTTTTCTTGTTCAAAGCGTATCCGCACTAATGAAATGGAATAGAAATACCTAATATCGTATGAGTCTTACTATATAAAGAATTAACACCTAACAATATATATTTATCATATACTATAAAATACCTAATAACACATTATGATTACCTGCAAGAAAAGGGAATGTATAAGAGTAATAAGCGGCCTGCCTGCTAACCAAACTGCGTAACCAAAGCGACTCCTTGTTGGTGGTTGATAGGTGTTGGTCCGATTCACCTATGTCAGTTCGAACTTGGCGGGTCGTTCGTTCGTGTGGAGAATCTCTCTCGTTACTCAGGATTTCTCTCAGTTGATCCGATGTGTCATAGATAGAATGGAGCGGGCTATACGCCGACCCACGTTAAAAACTTTCTTCTCTTATGAGATTTCAATTGAATAAACAATGGTTATTTCAAACACCATTTACTGTCCCACCAACTGATCAATGGGTTCATGCCGCACAGAAACCGAGACCTGAGAAGGAGGTTGTAGGAGAGAGTCCAGCATAACAGAAATCATCTAAGCTAACAAGGACCCAGAAAAGGAGCATGCTGAGGAAGAAGGTAATGAAATTGAAAATACAGACTGAAGTAGAGAAGAAACCCCAGCAGAAGGTTAGGCTGGGAAAGACCACATGAAGCTGGAGAAGGGACAGGACTCGTCAACGGAGTTTTTTAATGAGCTATCTTTCAGAAGGCTTGGTTCCGAAAGATGACCTGATGGAGGAAGACTTGAAGGTTG : GTGAGTCAAGTAGTCAGACCAGGTTAAGGAATAAAGAAAATGAGCCAAAGTTTCAAGTTATGTTCAGTAACTTACCGGATAAGGTGGATTGCAAGATGATCCTGACTATGCCAAGAGAGTTCATGGCAAAAACCAATCAGAATAAATCTTTGTAAAGGGATGTGGTGGATACTCAGTAAACTTGCCATGAGGTAGTGATGCCAAAAGTT</gDNA_template>
            <first_frame> Y  K  I  P  N  N  S  Y  H  M  I  L  T  I  *  N  Y  Y  L  T  I  N  I  I  I  Y  L  I  *  G  S  *  S  D  L  V  V  A  A  S  K  H  D  M  L  T  I  Y  P  *  F  P  Y  H  L  F  F  C  F  Y  L  S  *  P  G  S  F  F  T  H  S  F  S  S  F  V  *  L  S  V  G  N  S  I  *  F  T  L  F  L  L  A  R  I  V  Y  F  F  L  F  K  A  Y  P  H  *  *  N  G  I  E  I  P  N  I  V  *  V  L  L  Y  K  E  L  T  P  N  N  I  Y  L  S  Y  T  I  K  Y  L  I  T  H  Y  D  Y  L  Q  E  K  G  M  Y  K  S  N  K  R  P  A  C  *  P  N  C  V  T  K  A  T  P  C  W  W  L  I  G  V  G  P  I  H  L  C  Q  F  E  L  G  G  S  F  V  R  V  E  N  L  S  R  Y  S  G  F  L  S  V  D  P  M  C  H  R  *  N  G  A  G  Y  T  P  T  H  V  K  N  F  L  L  L  *  D  F  N  *  I  N  N  G  Y  F  K  H  H  L  L  S  H  Q  L  I  N  G  F  M  P  H  R  N  R  D  L  R  R  R  L  *  E  R  V  Q  H  N  R  N  H  L  S  *  Q  G  P  R  K  G  A  C  *  G  R  R  *  *  N  *  K  Y  R  L  K  *  R  R  N  P  S  R  R  L  G  W  E  R  P  H  E  A  G  E  G  T  G  L  V  N  G  V  F  *  *  A  I  F  Q  K  A  W  F  R  K  M  T  *  W  R  K  T  *  R  L  :  V  S  Q  V  V  R  P  G  *  G  I  K  K  M  S  Q  S  F  K  L  C  S  V  T  Y  R  I  R  W  I  A  R  *  S  *  L  C  Q  E  S  S  W  Q  K  P  I  R  I  N  L  C  K  G  M  W  W  I  L  S  K  L  A  M  R  *  *  C  Q  K   </first_frame>
            <second_frame>  I  K  Y  L  I  T  H  I  I  *  Y  L  P  Y  K  I  T  T  *  Q  *  I  L  S  Y  T  *  S  K  V  H  N  Q  T  *  W  *  Q  L  P  S  M  I  C  *  L  Y  I  P  N  S  L  I  T  C  S  S  A  F  I  F  L  S  Q  E  A  F  L  P  I  P  S  H  P  L  S  D  F  L  *  V  T  L  S  S  S  L  S  F  F  S  L  V  S  Y  T  F  S  C  S  K  R  I  R  T  N  E  M  E  *  K  Y  L  I  S  Y  E  S  Y  Y  I  K  N  *  H  L  T  I  Y  I  Y  H  I  L  *  N  T  *  *  H  I  M  I  T  C  K  K  R  E  C  I  R  V  I  S  G  L  P  A  N  Q  T  A  *  P  K  R  L  L  V  G  G  *  *  V  L  V  R  F  T  Y  V  S  S  N  L  A  G  R  S  F  V  W  R  I  S  L  V  T  Q  D  F  S  Q  L  I  R  C  V  I  D  R  M  E  R  A  I  R  R  P  T  L  K  T  F  F  S  Y  E  I  S  I  E  *  T  M  V  I  S  N  T  I  Y  C  P  T  N  *  S  M  G  S  C  R  T  E  T  E  T  *  E  G  G  C  R  R  E  S  S  I  T  E  I  I  *  A  N  K  D  P  E  K  E  H  A  E  E  E  G  N  E  I  E  N  T  D  *  S  R  E  E  T  P  A  E  G  *  A  G  K  D  H  M  K  L  E  K  G  Q  D  S  S  T  E  F  F  N  E  L  S  F  R  R  L  G  S  E  R  *  P  D  G  G  R  L  E  G  W :   *  V  K  *  S  D  Q  V  K  E  *  R  K  *  A  K  V  S  S  Y  V  Q  *  L  T  G  *  G  G  L  Q  D  D  P  D  Y  A  K  R  V  H  G  K  N  Q  S  E  *  I  F  V  K  G  C  G  G  Y  S  V  N  L  P  *  G  S  D  A  K  S  </second_frame>
            <third_frame>   *  N  T  *  *  L  I  S  Y  D  T  Y  H  I  K  L  L  P  N  N  K  Y  Y  H  I  L  D  L  R  F  I  I  R  L  S  G  S  S  F  Q  A  *  Y  V  N  Y  I  S  L  I  P  L  S  L  V  L  L  L  L  S  F  L  A  R  K  L  F  Y  P  F  L  L  I  L  C  L  T  F  C  R  *  L  Y  L  V  H  S  L  S  S  R  S  Y  R  I  L  F  L  V  Q  S  V  S  A  L  M  K  W  N  R  N  T  *  Y  R  M  S  L  T  I  *  R  I  N  T  *  Q  Y  I  F  I  I  Y  Y  K  I  P  N  N  T  L  *  L  P  A  R  K  G  N  V  *  E  *  *  A  A  C  L  L  T  K  L  R  N  Q  S  D  S  L  L  V  V  D  R  C  W  S  D  S  P  M  S  V  R  T  W  R  V  V  R  S  C  G  E  S  L  S  L  L  R  I  S  L  S  *  S  D  V  S  *  I  E  W  S  G  L  Y  A  D  P  R  *  K  L  S  S  L  M  R  F  Q  L  N  K  Q  W  L  F  Q  T  P  F  T  V  P  P  T  D  Q  W  V  H  A  A  Q  K  P  R  P  E  K  E  V  V  G  E  S  P  A  *  Q  K  S  S  K  L  T  R  T  Q  K  R  S  M  L  R  K  K  V  M  K  L  K  I  Q  T  E  V  E  K  K  P  Q  Q  K  V  R  L  G  K  T  T  *  S  W  R  R  D  R  T  R  Q  R  S  F  L  M  S  Y  L  S  E  G  L  V  P  K  D  D  L  M  E  E  D  L  K  V   : G  E  S  S  S  Q  T  R  L  R  N  K  E  N  E  P  K  F  Q  V  M  F  S  N  L  P  D  K  V  D  C  K  M  I  L  T  M  P  R  E  F  M  A  K  T  N  Q  N  K  S  L  *  R  D  V  V  D  T  Q  *  T  C  H  E  V  V  M  P  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45033" stop="45135"/>
                    <exon start="53839" stop="53993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWRRDRTRQRSFLMSYLSEGLVPKDDLMEEDLKVGESSSQTRLRNKENEPKFQVMFSNLPDKVDCKMILTMPREFMAKTNQNKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51651" PGL_stop="51099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51651" e_stop="51099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="51651" e_stop="51099" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51651" stop="51099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAGGCCCATCTGGTACTAGGGCGGTGACTCTTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGTCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTACAGTATTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTATAAAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  S  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  I  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  T  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  *  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  I  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  L  P  P  T  E  E  V  V  R  E  G  E  D  G  E  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  *  R  *  S  I  R  F  L  L  T  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  C  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  L  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  Y  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  K  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  Y  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   Q  A  H  L  V  L  G  R  *  L  F  H  R  L  R  K  *  *  E  K  G  R  M  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  P  *  R  V  I  *  S  R  P  D  T  S  S  V  F  Y  T  S  T  S  G  S  R  G  T  T  C  G  Y  C  V  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  Y  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  Y  S  I  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  I  K  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  M  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51606" stop="51232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSKRRGGWGNEQVQNEELPPQPTLEMINQVLAYLSGLSDQGQTPPVFSTPAPQAPEVQHAATVSPRMDASLEIGTFPRLTTGPIITNDQHELFSKFLKLKPTVFKGAESEDAYDFLVDCHELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="81019" PGL_stop="81664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81019" e_stop="81664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="81019" e_stop="81664" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81019" stop="81664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTATACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAATGCTTTTGAGAGGTTCGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTCTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTAAGGAATGTCTCAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGACTTCGAGAAAGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATATGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGAGATATATGTAAGTAAATATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  Y  T  R  W  N  S  T  Y  L  M  L  D  T  A  E  K  F  E  N  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  K  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  *  L  R  E  R  K  K  N  S  R  N  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  C  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  *  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  N  M  E  K  V  P  K  V  N  H  L  H  L  T  H  L  I  L  L  L  V  V  F  </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  I  L  G  G  I  P  P  I  *  C  *  T  Q  Q  K  S  L  R  M  L  L  R  G  S  I  F  M  M  V  I  L  I  L  F  L  L  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  K  E  C  L  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  R  Y  M  *  T  *  C  L  F  E  I  M  Y  S  K  *  *  P  *  F  E  *  N  D  F  E  K  E  R  K  I  Q  E  I  L  G  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  V  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  *  D  I  C  K  *  I  W  K  R  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  C  *  W  Y  F </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  Y  *  V  E  F  H  L  F  D  V  R  H  S  R  K  V  *  E  C  F  *  E  V  R  S  L  *  W  *  F  *  F  F  S  C  S  D  V  C  E  D  G  S  I  A  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  S  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  D  I  C  E  L  D  A  Y  L  K  L  C  I  A  S  D  D  L  D  L  S  K  M  T  S  R  K  K  E  K  F  K  K  Y  W  G  T  P  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  M  K  V  E  A  Y  L  R  D  L  F  E  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  A  S  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81150" stop="81662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSCSDVCEDGSIAGSIQYEDWANVRNVSKFLEKFYELTLKVSGSRYVTCNVHFEDICELDAYLKLCIASDDLDLSKMTSRKKEKFKKYWGTPEKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNMKVEAYLRDLFEIYVSKYGKGSKSQPSSSDSSDSSASGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="81978" PGL_stop="82562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81978" e_stop="82061"/>
            <exon e_start="82154" e_stop="82211"/>
            <exon e_start="82303" e_stop="82562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="0.983"/>
          <exon-only e_score="0.862"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81978" e_stop="82061" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.966">
            <gDNA_intron_boundary i_start="82062" i_stop="82153" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="82154" e_stop="82211" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82212" i_stop="82302" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.862">
            <gDNA_exon_boundary e_start="82303" e_stop="82562" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81978" stop="82061"/>
              <exon start="82154" stop="82211"/>
              <exon start="82303" stop="82562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG : AGATGGCAAATAGTGGAAGAAACTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG : GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCAATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGACATTTGAATTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTTAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGCTCATGAAAGACTTTATTGTTACATGTTAGATTGTTATTATGTTGTATTTGTGAAGACATTAA</gDNA_template>
            <first_frame> F  V  S  K  I  G  L  D  K  K  P  S  L  F  V  L  K  K  V  W  S  F  L  K  K  L  N  L  :  R  W  Q  I  V  E  E  T  L  P  L  L  I  Y  D  *  L  A  S   : G  P  R  V  K  T  M  K  K  *  F  C  W  H  V  T  L  E  S  *  K  Q  S  H  G  R  K  S  R  N  S  L  L  L  F  V  I  V  D  I  *  I  E  S  N  L  M  E  E  D  K  K  F  K  I  H  C  L  L  L  I  I  V  Y  Y  E  L  M  K  D  F  I  V  T  C  *  I  V  I  M  L  Y  L  *  R  H  * </first_frame>
            <second_frame>  L  C  P  R  L  A  *  T  R  N  Q  A  Y  L  C  *  R  K  F  G  V  S  *  K  N  *  T  * :   D  G  K  *  W  K  K  L  F  H  C  *  S  M  I  D  L  Q  A  :  V  Q  G  S  R  Q  *  R  N  N  F  V  G  T  *  H  L  K  V  E  S  N  L  M  E  E  S  Q  E  T  H  Y  C  C  L  L  L  L  T  F  E  L  K  V  I  S  W  K  K  T  R  S  L  K  Y  I  V  C  C  L  L  L  F  I  M  S  S  *  K  T  L  L  L  H  V  R  L  L  L  C  C  I  C  E  D  I   </second_frame>
            <third_frame>   C  V  Q  D  W  L  R  Q  E  T  K  P  I  C  V  E  E  S  L  E  F  L  E  K  I  E  L   : E  M  A  N  S  G  R  N  S  S  I  V  D  L  *  L  T  C  K  R :   S  K  G  Q  D  N  E  E  I  I  L  L  A  R  D  T  *  K  L  K  A  I  S  W  K  K  V  K  K  L  I  I  V  V  C  Y  C  *  H  L  N  *  K  *  S  H  G  R  R  Q  E  V  *  N  T  L  F  V  A  Y  Y  C  L  L  *  A  H  E  R  L  Y  C  Y  M  L  D  C  Y  Y  V  V  F  V  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0050P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="86426" PGL_stop="90254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86426" e_stop="86651"/>
            <exon e_start="88095" e_stop="88290"/>
            <exon e_start="88400" e_stop="88581"/>
            <exon e_start="89293" e_stop="89410"/>
            <exon e_start="89508" e_stop="89697"/>
            <exon e_start="90070" e_stop="90254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="86426" e_stop="86651" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86652" i_stop="88094" i_length="1443"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88095" e_stop="88290" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88291" i_stop="88399" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88400" e_stop="88581" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="0.986">
            <gDNA_intron_boundary i_start="88582" i_stop="89292" i_length="711"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89293" e_stop="89410" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.987">
            <gDNA_intron_boundary i_start="89411" i_stop="89507" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89508" e_stop="89697" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89698" i_stop="90069" i_length="372"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="90070" e_stop="90254" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86426" stop="86651"/>
              <exon start="88095" stop="88235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88190" stop="88290"/>
              <exon start="88400" stop="88581"/>
              <exon start="89293" stop="89410"/>
              <exon start="89508" stop="89697"/>
              <exon start="90070" stop="90254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTAGAATATCAGAGAAAGAAGGTGAAGTAGAGGAGTGATGTTCAGTTGAGGAAAATGCACTGTTTCTTCACATTGGCTTAACCCCTATCAAGATTGATTAAGCTGTGTTTTAAGGTACCCTCTGTTTCTTTGAGGAGAAGAAATGGAGGCAGGTGGTGGAATGGTAGCTGGATCTCACAAGCGTAATGAGTTGGTTAGGATTCGACATGATTCTGATAGTGGG : CCGAAACCCTTGAAGCCTCTCAATAGCCAAATATGCCAAATTTGTGGTGATACTGTTGGTTCGACTGCTAGTGGTGATGTATTCATTGCTTGTAATGAGTGTGCCTTTCCTGTTTGCCGGGCTTGTTATGAGTACGAGCGTAAAGATGGAAATCAATCATGTCCTCAATGCAAGACCAGATACAAGAGGTTCAAGG : GGAGTCCACGAGTGGATGGAGATGATGACGAGGAAGATGTTGATGATATCGACAATGAGTTCAATTATGCTCAAGGAAACAGCAAGGCCAGACAGCAATGGCAGGGTGATGATGCTGGTCTCTCTTCATCCTCTAGACACGAATCTCAGCAACCGATTCCTCTTCTTACAGATGGCCAGCCA : GTGTCTGGTGATTTTCCTAGTGCAACAACTGATACACAATCTGTAAGAAGTATGTCAGGACCCTTAGGCCCTGGAGACAAGCATTCATCCCTGTCTTATGTTGATCCAAGACAGCCTG : TTCCTGTAAGAATTGTGGACCCCTCAAAGGACTTGAATTCTTATGGGCTTGGAAGTGTTGACTGGAAGGAGAGAGTAGAGGGTTGGAAACTGAAACAGGAGAAAAATCTGGTGCATTCGACAAACAGATATTCTGAAGGGAAAGGCGGGGACATTGAAGGGACAGGGTCGAATGGAGAAGAGCTACAAAT : GGCTGACGATGCTCGCCAGCCTATGAGCCGTGTGGTGCCTATTCCTTCATCCCACCTTACCCCATATCGGGTTGTTATCATTTTGCGGTTGATCATCTTGGGATTTTTCATGCAATACCGTCTAACTCATCCAGTGAATGATGCATATCCTCTGTGGCTAGTATCAGTTATTTGTGAGGTTTGGT</gDNA_template>
            <first_frame> A  L  E  Y  Q  R  K  K  V  K  *  R  S  D  V  Q  L  R  K  M  H  C  F  F  T  L  A  *  P  L  S  R  L  I  K  L  C  F  K  V  P  S  V  S  L  R  R  R  N  G  G  R  W  W  N  G  S  W  I  S  Q  A  *  *  V  G  *  D  S  T  *  F  *  *  W   : A  E  T  L  E  A  S  Q  *  P  N  M  P  N  L  W  *  Y  C  W  F  D  C  *  W  *  C  I  H  C  L  *  *  V  C  L  S  C  L  P  G  L  L  *  V  R  A  *  R  W  K  S  I  M  S  S  M  Q  D  Q  I  Q  E  V  Q  G :   E  S  T  S  G  W  R  *  *  R  G  R  C  *  *  Y  R  Q  *  V  Q  L  C  S  R  K  Q  Q  G  Q  T  A  M  A  G  *  *  C  W  S  L  F  I  L  *  T  R  I  S  A  T  D  S  S  S  Y  R  W  P  A   : S  V  W  *  F  S  *  C  N  N  *  Y  T  I  C  K  K  Y  V  R  T  L  R  P  W  R  Q  A  F  I  P  V  L  C  *  S  K  T  A  C :   S  C  K  N  C  G  P  L  K  G  L  E  F  L  W  A  W  K  C  *  L  E  G  E  S  R  G  L  E  T  E  T  G  E  K  S  G  A  F  D  K  Q  I  F  *  R  E  R  R  G  H  *  R  D  R  V  E  W  R  R  A  T  N  :  G  *  R  C  S  P  A  Y  E  P  C  G  A  Y  S  F  I  P  P  Y  P  I  S  G  C  Y  H  F  A  V  D  H  L  G  I  F  H  A  I  P  S  N  S  S  S  E  *  C  I  S  S  V  A  S  I  S  Y  L  *  G  L   </first_frame>
            <second_frame>  H  *  N  I  R  E  R  R  *  S  R  G  V  M  F  S  *  G  K  C  T  V  S  S  H  W  L  N  P  Y  Q  D  *  L  S  C  V  L  R  Y  P  L  F  L  *  G  E  E  M  E  A  G  G  G  M  V  A  G  S  H  K  R  N  E  L  V  R  I  R  H  D  S  D  S  G  :  P  K  P  L  K  P  L  N  S  Q  I  C  Q  I  C  G  D  T  V  G  S  T  A  S  G  D  V  F  I  A  C  N  E  C  A  F  P  V  C  R  A  C  Y  E  Y  E  R  K  D  G  N  Q  S  C  P  Q  C  K  T  R  Y  K  R  F  K   : G  S  P  R  V  D  G  D  D  D  E  E  D  V  D  D  I  D  N  E  F  N  Y  A  Q  G  N  S  K  A  R  Q  Q  W  Q  G  D  D  A  G  L  S  S  S  S  R  H  E  S  Q  Q  P  I  P  L  L  T  D  G  Q  P  :  V  S  G  D  F  P  S  A  T  T  D  T  Q  S  V  R  S  M  S  G  P  L  G  P  G  D  K  H  S  S  L  S  Y  V  D  P  R  Q  P   : V  P  V  R  I  V  D  P  S  K  D  L  N  S  Y  G  L  G  S  V  D  W  K  E  R  V  E  G  W  K  L  K  Q  E  K  N  L  V  H  S  T  N  R  Y  S  E  G  K  G  G  D  I  E  G  T  G  S  N  G  E  E  L  Q  M :   A  D  D  A  R  Q  P  M  S  R  V  V  P  I  P  S  S  H  L  T  P  Y  R  V  V  I  I  L  R  L  I  I  L  G  F  F  M  Q  Y  R  L  T  H  P  V  N  D  A  Y  P  L  W  L  V  S  V  I  C  E  V  W  </second_frame>
            <third_frame>   I  R  I  S  E  K  E  G  E  V  E  E  *  C  S  V  E  E  N  A  L  F  L  H  I  G  L  T  P  I  K  I  D  *  A  V  F  *  G  T  L  C  F  F  E  E  K  K  W  R  Q  V  V  E  W  *  L  D  L  T  S  V  M  S  W  L  G  F  D  M  I  L  I  V  G :   R  N  P  *  S  L  S  I  A  K  Y  A  K  F  V  V  I  L  L  V  R  L  L  V  V  M  Y  S  L  L  V  M  S  V  P  F  L  F  A  G  L  V  M  S  T  S  V  K  M  E  I  N  H  V  L  N  A  R  P  D  T  R  G  S  R  :  G  V  H  E  W  M  E  M  M  T  R  K  M  L  M  I  S  T  M  S  S  I  M  L  K  E  T  A  R  P  D  S  N  G  R  V  M  M  L  V  S  L  H  P  L  D  T  N  L  S  N  R  F  L  F  L  Q  M  A  S  Q :   C  L  V  I  F  L  V  Q  Q  L  I  H  N  L  *  E  V  C  Q  D  P  *  A  L  E  T  S  I  H  P  C  L  M  L  I  Q  D  S  L  :  F  L  *  E  L  W  T  P  Q  R  T  *  I  L  M  G  L  E  V  L  T  G  R  R  E  *  R  V  G  N  *  N  R  R  K  I  W  C  I  R  Q  T  D  I  L  K  G  K  A  G  T  L  K  G  Q  G  R  M  E  K  S  Y  K   : W  L  T  M  L  A  S  L  *  A  V  W  C  L  F  L  H  P  T  L  P  H  I  G  L  L  S  F  C  G  *  S  S  W  D  F  S  C  N  T  V  *  L  I  Q  *  M  M  H  I  L  C  G  *  Y  Q  L  F  V  R  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86562" stop="86651"/>
                    <exon start="88095" stop="88290"/>
                    <exon start="88400" stop="88581"/>
                    <exon start="89293" stop="89410"/>
                    <exon start="89508" stop="89697"/>
                    <exon start="90070" stop="90253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEEMEAGGGMVAGSHKRNELVRIRHDSDSGPKPLKPLNSQICQICGDTVGSTASGDVFIACNECAFPVCRACYEYERKDGNQSCPQCKTRYKRFKGSPRVDGDDDEEDVDDIDNEFNYAQGNSKARQQWQGDDAGLSSSSRHESQQPIPLLTDGQPVSGDFPSATTDTQSVRSMSGPLGPGDKHSSLSYVDPRQPVPVRIVDPSKDLNSYGLGSVDWKERVEGWKLKQEKNLVHSTNRYSEGKGGDIEGTGSNGEELQMADDARQPMSRVVPIPSSHLTPYRVVIILRLIILGFFMQYRLTHPVNDAYPLWLVSVICEVW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="90758" PGL_stop="108362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90758" e_stop="90824"/>
            <exon e_start="91232" e_stop="91369"/>
            <exon e_start="91458" e_stop="91583"/>
            <exon e_start="91796" e_stop="92008"/>
            <exon e_start="92114" e_stop="92381"/>
            <exon e_start="92775" e_stop="92971"/>
            <exon e_start="93085" e_stop="93435"/>
            <exon e_start="93890" e_stop="94650"/>
            <exon e_start="96035" e_stop="96042"/>
            <exon e_start="108323" e_stop="108362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.257" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90758" e_stop="90824" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90825" i_stop="91231" i_length="407"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="91232" e_stop="91369" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91370" i_stop="91457" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91458" e_stop="91583" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="91584" i_stop="91795" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91796" e_stop="92008" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="92009" i_stop="92113" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92114" e_stop="92381" e_length="268"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92382" i_stop="92774" i_length="393"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92775" e_stop="92971" e_length="197"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.884">
            <gDNA_intron_boundary i_start="92972" i_stop="93084" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93085" e_stop="93435" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.670">
            <gDNA_intron_boundary i_start="93436" i_stop="93889" i_length="454"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93890" e_stop="94650" e_length="761"/>
          </exon>
          <intron i_serial="8" don_prob="0.257" acc_prob="0.871">
            <gDNA_intron_boundary i_start="94651" i_stop="96034" i_length="1384"/>
          </intron>
          <exon e_serial="9" e_score="0.750">
            <gDNA_exon_boundary e_start="96035" e_stop="96042" e_length="8"/>
          </exon>
          <intron i_serial="9" don_prob="0.825" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96043" i_stop="108322" i_length="12280"/>
          </intron>
          <exon e_serial="10" e_score="0.900">
            <gDNA_exon_boundary e_start="108323" e_stop="108362" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90758" stop="90824"/>
              <exon start="91232" stop="91369"/>
              <exon start="91458" stop="91583"/>
              <exon start="91796" stop="92008"/>
              <exon start="92114" stop="92381"/>
              <exon start="92775" stop="92971"/>
              <exon start="93085" stop="93435"/>
              <exon start="93890" stop="94650"/>
              <exon start="96035" stop="96042"/>
              <exon start="108323" stop="108362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAAGATAGATTATTTGAAGGACAAGGTTCAGCCTTCTTTTGTGAAAGAGCGCAGGGCAATGAAG : AGGGAGTATGAAGAATTTAAAATACGAATCAATGCTCTTGTTGCAAAAGCGCAAAAAATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACAGCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATCCAG : GTCTTTTTGGGGCACAGCGGGGGCCTTGATACTGATGGAAATGAACTTCCTCGTCTGGTGTATGTTTCTCGTGAGAAGCGACCAGGTTTTCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTG : ATTCGTGTTTCTGCAGTTCTTACCAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCACTTAAAGAAGCAATGTGTTTCCTCATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAGTTCCCTCAGCGATTTGATGGCATTGACTTGCACGATCGATATGCTAACCGAAACATTGTGTTCTTTGAT : ATCAACTTGAAAGGGTTGGATGGCCTTCAGGGTCCTATGTATGTGGGAACTGGGTGTTGTTTTAACAGGCAGGCCCTTTACGGGTATGATCCTGTATTAACTGAGGCTGATTTGGAGCCAAACATCATTGTTAAGAGCTGTTGTGGTGGGTCAAGGAAGAAGGGAAGGAGTGGAAACAAGAAATACATTGATAAGAAGAGGGCAGTAAAAAGAACAGAATCCACTGTCCCAATTTTCAATATGGAAGACATTGAAGAAGGCGTAGAAG : GATATGATGAGGAGAAGTCACTGCTTATGTCACAGAGGAGCTTGGAGAAGCGATTTGGTCAATCACCAGTGTTTATTGCTGCCACATTTATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAAAGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGGGAAAAGAG : ATTGGGTGGATATATGGGTCTGTCACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCCTCGACCAGCGTTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAGGCATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAGATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGCTTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATCATTCCTGAG : ATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCTTTCCATTTTCGCAACTGGTATATTGGAGCTTAGGTGGAGTGGTGTGAGTATTGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGTGGTACATCGGCTCACTTGTTTGCAGTTTTCCAAGGTCTCCTGAAAGTGCTTGCTGGGATTGATACCAACTTTACAGTCACATCAAAGGCAAACGATGAGGATGGAGATTTTGCTGAGCTTTATGTGTTCAAATGGACAACTCTCCTTATTCCTCCTACAGCAATCCTTATCGTGAATCTGGTAGGAATTGTGGCAGGTGTTTCGTATGCCATAAACAGTGGATATCAATCATGGGGTCCTCTATTCGGGAAGTTGTTCTTTGCCATTTGGGTCATTGTCCACTTGTACCCTTTCCTCAAAGGTTTGTTGGGACGTCAGAATCGTACTCCTACCATTGTCATTGTCTGGGCTGTTCTCCTTGCATCCATATTCTCATTGCTTTGGGTGCGTATCGACCCCTTCACATCAGACGCGTCAAAGACTGCTGCAAGAGGTCAATGTGGTATCAACTGTTAGTGAGAAGTTTATTTATTTTAAGGTAAGATGTTTGCTTATCCATTCTCATGTTGTATATAAGAAAACTATGCCGGTTCGGTTAAGTCCTGTAGTCATTTTGTACCAATGTTGTAAGTCGGAAGGAGTGTGATGCATGAAAGACATCAAAACTCATGGATTTACGCCTTTTTGTT : ATAAAAAG : ACTAAAAAATAAAAAAAAATAAAAAATAAAAAATAAAAAA</gDNA_template>
            <first_frame> S  K  D  R  L  F  E  G  Q  G  S  A  F  F  C  E  R  A  Q  G  N  E   : E  G  V  *  R  I  *  N  T  N  Q  C  S  C  C  K  S  A  K  N  A  *  R  R  L  D  N  A  R  W  N  S  L  A  W  K  *  P  *  G  S  S  R  N  D  P   : G  L  F  G  A  Q  R  G  P  *  Y  *  W  K  *  T  S  S  S  G  V  C  F  S  *  E  A  T  R  F  S  T  P  Q  E  S  W  S  Y  E  C  F   : D  S  C  F  C  S  S  Y  Q  W  S  I  S  F  E  C  R  L  *  S  L  L  *  Q  Q  Q  S  T  *  R  S  N  V  F  P  H  G  S  C  S  W  K  E  D  M  L  C  S  V  P  S  A  I  *  W  H  *  L  A  R  S  I  C  *  P  K  H  C  V  L  *   : Y  Q  L  E  R  V  G  W  P  S  G  S  Y  V  C  G  N  W  V  L  F  *  Q  A  G  P  L  R  V  *  S  C  I  N  *  G  *  F  G  A  K  H  H  C  *  E  L  L  W  W  V  K  E  E  G  K  E  W  K  Q  E  I  H  *  *  E  E  G  S  K  K  N  R  I  H  C  P  N  F  Q  Y  G  R  H  *  R  R  R  R  R :   I  *  *  G  E  V  T  A  Y  V  T  E  E  L  G  E  A  I  W  S  I  T  S  V  Y  C  C  H  I  Y  G  T  R  R  H  S  C  I  H  *  S  C  I  S  F  E  R  S  N  S  C  Y  *  L  W  L  R  G  Q  D  *  M  G  K  R   : D  W  V  D  I  W  V  C  H  *  R  Y  F  D  W  V  *  D  A  C  T  R  M  V  F  P  L  L  H  A  S  S  T  S  V  *  R  V  C  S  Y  Q  S  F  *  S  F  K  P  G  A  P  V  G  F  G  F  C  *  N  P  V  E  *  A  L  P  N  M  V  W  L  Q  W  Q  I  D  A  S  G  E  I  S  I  Y  *  Y  N  R  L  S  S  H  I  F  T  L  A  C  L  L  Y  A  S  C  H  L  S  S  D  R  Q  I  Y  H  S  *   : D  K  Q  L  C  W  H  V  V  H  S  T  L  S  F  H  F  R  N  W  Y  I  G  A  *  V  E  W  C  E  Y  *  R  L  V  E  K  *  T  V  L  G  H  W  W  Y  I  G  S  L  V  C  S  F  P  R  S  P  E  S  A  C  W  D  *  Y  Q  L  Y  S  H  I  K  G  K  R  *  G  W  R  F  C  *  A  L  C  V  Q  M  D  N  S  P  Y  S  S  Y  S  N  P  Y  R  E  S  G  R  N  C  G  R  C  F  V  C  H  K  Q  W  I  S  I  M  G  S  S  I  R  E  V  V  L  C  H  L  G  H  C  P  L  V  P  F  P  Q  R  F  V  G  T  S  E  S  Y  S  Y  H  C  H  C  L  G  C  S  P  C  I  H  I  L  I  A  L  G  A  Y  R  P  L  H  I  R  R  V  K  D  C  C  K  R  S  M  W  Y  Q  L  L  V  R  S  L  F  I  L  R  *  D  V  C  L  S  I  L  M  L  Y  I  R  K  L  C  R  F  G  *  V  L  *  S  F  C  T  N  V  V  S  R  K  E  C  D  A  *  K  T  S  K  L  M  D  L  R  L  F  V  :  I  K  R :   L  K  N  K  K  K  *  K  I  K  N  K  K </first_frame>
            <second_frame>  Q  K  I  D  Y  L  K  D  K  V  Q  P  S  F  V  K  E  R  R  A  M  K  :  R  E  Y  E  E  F  K  I  R  I  N  A  L  V  A  K  A  Q  K  M  P  E  E  G  W  T  M  Q  D  G  T  A  W  P  G  N  N  P  R  D  H  P  G  M  I  Q  :  V  F  L  G  H  S  G  G  L  D  T  D  G  N  E  L  P  R  L  V  Y  V  S  R  E  K  R  P  G  F  Q  H  H  K  K  A  G  A  M  N  A  L  :  I  R  V  S  A  V  L  T  N  G  A  Y  L  L  N  V  D  C  D  H  Y  F  N  N  S  K  A  L  K  E  A  M  C  F  L  M  D  P  V  L  G  K  K  T  C  Y  V  Q  F  P  Q  R  F  D  G  I  D  L  H  D  R  Y  A  N  R  N  I  V  F  F  D  :  I  N  L  K  G  L  D  G  L  Q  G  P  M  Y  V  G  T  G  C  C  F  N  R  Q  A  L  Y  G  Y  D  P  V  L  T  E  A  D  L  E  P  N  I  I  V  K  S  C  C  G  G  S  R  K  K  G  R  S  G  N  K  K  Y  I  D  K  K  R  A  V  K  R  T  E  S  T  V  P  I  F  N  M  E  D  I  E  E  G  V  E   : G  Y  D  E  E  K  S  L  L  M  S  Q  R  S  L  E  K  R  F  G  Q  S  P  V  F  I  A  A  T  F  M  E  Q  G  G  I  P  A  S  T  N  P  A  S  L  L  K  E  A  I  H  V  I  S  C  G  Y  E  D  K  T  E  W  G  K  E  :  I  G  W  I  Y  G  S  V  T  E  D  I  L  T  G  F  K  M  H  A  R  G  W  Y  S  L  Y  C  M  P  P  R  P  A  F  K  G  S  A  P  I  N  L  S  D  R  L  N  Q  V  L  R  W  A  L  G  S  V  E  I  L  L  S  R  H  C  P  I  W  Y  G  Y  S  G  R  L  M  L  L  E  R  L  A  Y  I  N  T  I  V  Y  P  L  T  S  L  P  L  L  A  Y  C  T  L  P  A  I  C  L  L  T  G  K  F  I  I  P  E  :  I  S  N  Y  A  G  M  W  F  I  L  L  F  L  S  I  F  A  T  G  I  L  E  L  R  W  S  G  V  S  I  E  D  W  W  R  N  E  Q  F  W  V  I  G  G  T  S  A  H  L  F  A  V  F  Q  G  L  L  K  V  L  A  G  I  D  T  N  F  T  V  T  S  K  A  N  D  E  D  G  D  F  A  E  L  Y  V  F  K  W  T  T  L  L  I  P  P  T  A  I  L  I  V  N  L  V  G  I  V  A  G  V  S  Y  A  I  N  S  G  Y  Q  S  W  G  P  L  F  G  K  L  F  F  A  I  W  V  I  V  H  L  Y  P  F  L  K  G  L  L  G  R  Q  N  R  T  P  T  I  V  I  V  W  A  V  L  L  A  S  I  F  S  L  L  W  V  R  I  D  P  F  T  S  D  A  S  K  T  A  A  R  G  Q  C  G  I  N  C  *  *  E  V  Y  L  F  *  G  K  M  F  A  Y  P  F  S  C  C  I  *  E  N  Y  A  G  S  V  K  S  C  S  H  F  V  P  M  L  *  V  G  R  S  V  M  H  E  R  H  Q  N  S  W  I  Y  A  F  L  L :   *  K   : D  *  K  I  K  K  N  K  K  *  K  I  K   </second_frame>
            <third_frame>   K  R  *  I  I  *  R  T  R  F  S  L  L  L  *  K  S  A  G  Q  *  R :   G  S  M  K  N  L  K  Y  E  S  M  L  L  L  Q  K  R  K  K  C  L  K  K  V  G  Q  C  K  M  E  Q  L  G  L  E  I  T  L  G  I  I  Q  E  *  S  R :   S  F  W  G  T  A  G  A  L  I  L  M  E  M  N  F  L  V  W  C  M  F  L  V  R  S  D  Q  V  F  N  T  T  R  K  L  E  L  *  M  L  * :   F  V  F  L  Q  F  L  P  M  E  H  I  F  *  M  S  I  V  I  T  T  L  T  T  A  K  H  L  K  K  Q  C  V  S  S  W  I  L  F  L  E  R  R  H  A  M  F  S  S  L  S  D  L  M  A  L  T  C  T  I  D  M  L  T  E  T  L  C  S  L  I :   S  T  *  K  G  W  M  A  F  R  V  L  C  M  W  E  L  G  V  V  L  T  G  R  P  F  T  G  M  I  L  Y  *  L  R  L  I  W  S  Q  T  S  L  L  R  A  V  V  V  G  Q  G  R  R  E  G  V  E  T  R  N  T  L  I  R  R  G  Q  *  K  E  Q  N  P  L  S  Q  F  S  I  W  K  T  L  K  K  A  *  K  :  D  M  M  R  R  S  H  C  L  C  H  R  G  A  W  R  S  D  L  V  N  H  Q  C  L  L  L  P  H  L  W  N  K  E  A  F  L  H  P  L  I  L  H  L  F  *  K  K  Q  F  M  L  L  A  V  A  T  R  T  R  L  N  G  E  K  R :   L  G  G  Y  M  G  L  S  L  K  I  F  *  L  G  L  R  C  M  H  E  D  G  I  P  S  I  A  C  L  L  D  Q  R  L  K  G  L  L  L  S  I  F  L  I  V  *  T  R  C  S  G  G  L  W  V  L  L  K  S  C  *  V  G  I  A  Q  Y  G  M  A  T  V  A  D  *  C  F  W  R  D  *  H  I  L  I  Q  S  S  I  L  S  H  L  Y  P  C  L  L  T  V  R  F  L  P  S  V  F  *  P  A  N  L  S  F  L  R :   *  A  T  M  L  A  C  G  S  F  Y  S  F  F  P  F  S  Q  L  V  Y  W  S  L  G  G  V  V  *  V  L  K  T  G  G  E  M  N  S  F  G  S  L  V  V  H  R  L  T  C  L  Q  F  S  K  V  S  *  K  C  L  L  G  L  I  P  T  L  Q  S  H  Q  R  Q  T  M  R  M  E  I  L  L  S  F  M  C  S  N  G  Q  L  S  L  F  L  L  Q  Q  S  L  S  *  I  W  *  E  L  W  Q  V  F  R  M  P  *  T  V  D  I  N  H  G  V  L  Y  S  G  S  C  S  L  P  F  G  S  L  S  T  C  T  L  S  S  K  V  C  W  D  V  R  I  V  L  L  P  L  S  L  S  G  L  F  S  L  H  P  Y  S  H  C  F  G  C  V  S  T  P  S  H  Q  T  R  Q  R  L  L  Q  E  V  N  V  V  S  T  V  S  E  K  F  I  Y  F  K  V  R  C  L  L  I  H  S  H  V  V  Y  K  K  T  M  P  V  R  L  S  P  V  V  I  L  Y  Q  C  C  K  S  E  G  V  *  C  M  K  D  I  K  T  H  G  F  T  P  F  C   : Y  K  K  :  T  K  K  *  K  K  I  K  N  K  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90759" stop="90824"/>
                    <exon start="91232" stop="91369"/>
                    <exon start="91458" stop="91583"/>
                    <exon start="91796" stop="92008"/>
                    <exon start="92114" stop="92381"/>
                    <exon start="92775" stop="92971"/>
                    <exon start="93085" stop="93435"/>
                    <exon start="93890" stop="94477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1944</number_coding_nucleotides>
                  <number_encoded_amino_acids>648</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKIDYLKDKVQPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFLMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPMYVGTGCCFNRQALYGYDPVLTEADLEPNIIVKSCCGGSRKKGRSGNKKYIDKKRAVKRTESTVPIFNMEDIEEGVEGYDEEKSLLMSQRSLEKRFGQSPVFIAATFMEQGGIPASTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWYSLYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLMLLERLAYINTIVYPLTSLPLLAYCTLPAICLLTGKFIIPEISNYAGMWFILLFLSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTTLLIPPTAILIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIVHLYPFLKGLLGRQNRTPTIVIVWAVLLASIFSLLWVRIDPFTSDASKTAARGQCGINC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="99118" PGL_stop="95321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99118" e_stop="98229"/>
            <exon e_start="96290" e_stop="96129"/>
            <exon e_start="96028" e_stop="95321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99118" e_stop="98229" e_length="890"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.898">
            <gDNA_intron_boundary i_start="98228" i_stop="96291" i_length="1938"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96290" e_stop="96129" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96128" i_stop="96029" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="96028" e_stop="95321" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99118" stop="98229"/>
              <exon start="96290" stop="96129"/>
              <exon start="96028" stop="95321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99000" stop="98684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTGTGATTTCTACAAATCTTTTCCTCCTTTCGTTTTCTGGGGTTGGAAGGGAGAGGAACAGAGTCACCACTGTTACTCATTTTTCATCCTAACAAACATAGCATATATCGCCTCCCATCCCCCAAGATATTATCAATATCTCTTCAAAAATTCGATCTTTACTCATTAATCTCACAACCCCTCTTCTCAAGAATGGGATTTTAATATACCCACTTAGTAAAAATCGATTCTTTGAATGTCCCAAATTGTCTGTGAGTTTTTTCTTGTTTTCTCAAGCTCTACATTGAAAAGGGTAATTTTTGGTTTTTTGTGAGGAAGTCTAGATTGATGGCTAGAAGGGATATACAAGCGTTTGAGCGTAAAAAGGATGGGAGTATGTCTATTTCTCATTTGGGGCTACAATGGAGTCTCCAAGATTCAAACTTTTGTCCTGGTGGATTGTTTGCATCAGTTGGTCAGATGGGAAGTATGGGGTTTGGTGTTTCATCACCTAATCCTTCTGATTCCCGGGATGAAAATGGTGGATTTAAGCTACCTTATTCCGATTTGTGTTTGAAATATTTATCATTCTCCGAGGGGTTTAAGATTGCAGGCAATGGGGAGGAAGAAGGGGTTGTAAAGGAGGAGAAGAAGAAAGGTGGGCTAAAGATTAAGCTTAAGGTTTCAAATCCTTCATTAAGGAGGTTAATAAGTGGTGCGATCGCCGGGGCGATATCTAGAACTGCTGTAGCTCCGTTGGAGACAATAAGAACACATTTGATGGTGGGAAGTAGTGGACATTCTAGTACTGAGGTGTTCAATAGTATCATGAAGACTGAAGGATGGACTGGATTGTTTAGGGGTAACTTTGTTAATGTGATTAGAGTTGCCCCTAGCAAAGCTGTAGAG : CTTTTTGTGTATGATACTGTTAATAAGAACTTGTCATCTAAACCCGGTAACCAGTCCAAAATTCCAATTCCTGCCTCATTAGTTGCAGGAGCCTGTGCCGGAGTCAGCTCTACCTTACTGACATATCCACTTGAGCTAGTGAAGACTCGGTTGACGATTCAG : AGAGGAGTTTACAATGGCTTATTTGATGCATTTGTAAAAATATTGAAAGAGGGTGGGCCTGCTGAGCTCTATAGAGGTCTCACTCCTAGTGTTATAGGAGTCATTCCCTATGCGGCCACAAACTACTTTGCTTATGATTCATTGCGGAAAGCCTACAGAAAGATTTTCAAGGAAGAGAAGATTGGAAACATAGAGACTCTTCTAATTGGATCAGCAGCTGGTGCTATATCTAGCACTGCAACCTTTCCTCTAGAGGTGGCTCGTAAGCACATGCAGGTGGGTGCTGTTAGTGGAAGAGCAGTTTACAAGAATGTAATTCATGCTCTTGTGAGTATACTGGAACAGGATGGGATTCAGGGTCTGTATAAAGGGCTTGGTCCCAGCTGCATGAAGTTAGTTCCTGCCGCAGGAATATCTTTCATGTGTTATGAAGCATGCAAGAGGATATTGGTTGAGGCAGAAAATGAGAAGTAAAGGAGCTCTTTCAGAAATATGCTAGGCAAAGGGTAGGGAAAATCTCTTTATACGATTGAGTTTTATTTATCTTGCTCCATTTTCCAGACGCTGGAAATTTTGTTTTGGATTGAGCCTGGTTTGTCAGGTGAGAAATGCTAATACTGGTTTTAGTCCTTTTTTCACTACTGAATCAAGATAATGAAATGCAGTTTGATGGTAAGATATTGCCATTGCCGCTTTGTGATTGTGAAA</gDNA_template>
            <first_frame> R  C  D  F  Y  K  S  F  P  P  F  V  F  W  G  W  K  G  E  E  Q  S  H  H  C  Y  S  F  F  I  L  T  N  I  A  Y  I  A  S  H  P  P  R  Y  Y  Q  Y  L  F  K  N  S  I  F  T  H  *  S  H  N  P  S  S  Q  E  W  D  F  N  I  P  T  *  *  K  S  I  L  *  M  S  Q  I  V  C  E  F  F  L  V  F  S  S  S  T  L  K  R  V  I  F  G  F  L  *  G  S  L  D  *  W  L  E  G  I  Y  K  R  L  S  V  K  R  M  G  V  C  L  F  L  I  W  G  Y  N  G  V  S  K  I  Q  T  F  V  L  V  D  C  L  H  Q  L  V  R  W  E  V  W  G  L  V  F  H  H  L  I  L  L  I  P  G  M  K  M  V  D  L  S  Y  L  I  P  I  C  V  *  N  I  Y  H  S  P  R  G  L  R  L  Q  A  M  G  R  K  K  G  L  *  R  R  R  R  R  K  V  G  *  R  L  S  L  R  F  Q  I  L  H  *  G  G  *  *  V  V  R  S  P  G  R  Y  L  E  L  L  *  L  R  W  R  Q  *  E  H  I  *  W  W  E  V  V  D  I  L  V  L  R  C  S  I  V  S  *  R  L  K  D  G  L  D  C  L  G  V  T  L  L  M  *  L  E  L  P  L  A  K  L  *  S :   F  L  C  M  I  L  L  I  R  T  C  H  L  N  P  V  T  S  P  K  F  Q  F  L  P  H  *  L  Q  E  P  V  P  E  S  A  L  P  Y  *  H  I  H  L  S  *  *  R  L  G  *  R  F  R :   E  E  F  T  M  A  Y  L  M  H  L  *  K  Y  *  K  R  V  G  L  L  S  S  I  E  V  S  L  L  V  L  *  E  S  F  P  M  R  P  Q  T  T  L  L  M  I  H  C  G  K  P  T  E  R  F  S  R  K  R  R  L  E  T  *  R  L  F  *  L  D  Q  Q  L  V  L  Y  L  A  L  Q  P  F  L  *  R  W  L  V  S  T  C  R  W  V  L  L  V  E  E  Q  F  T  R  M  *  F  M  L  L  *  V  Y  W  N  R  M  G  F  R  V  C  I  K  G  L  V  P  A  A  *  S  *  F  L  P  Q  E  Y  L  S  C  V  M  K  H  A  R  G  Y  W  L  R  Q  K  M  R  S  K  G  A  L  S  E  I  C  *  A  K  G  R  E  N  L  F  I  R  L  S  F  I  Y  L  A  P  F  S  R  R  W  K  F  C  F  G  L  S  L  V  C  Q  V  R  N  A  N  T  G  F  S  P  F  F  T  T  E  S  R  *  *  N  A  V  *  W  *  D  I  A  I  A  A  L  *  L  *   </first_frame>
            <second_frame>  G  V  I  S  T  N  L  F  L  L  S  F  S  G  V  G  R  E  R  N  R  V  T  T  V  T  H  F  S  S  *  Q  T  *  H  I  S  P  P  I  P  Q  D  I  I  N  I  S  S  K  I  R  S  L  L  I  N  L  T  T  P  L  L  K  N  G  I  L  I  Y  P  L  S  K  N  R  F  F  E  C  P  K  L  S  V  S  F  F  L  F  S  Q  A  L  H  *  K  G  *  F  L  V  F  C  E  E  V  *  I  D  G  *  K  G  Y  T  S  V  *  A  *  K  G  W  E  Y  V  Y  F  S  F  G  A  T  M  E  S  P  R  F  K  L  L  S  W  W  I  V  C  I  S  W  S  D  G  K  Y  G  V  W  C  F  I  T  *  S  F  *  F  P  G  *  K  W  W  I  *  A  T  L  F  R  F  V  F  E  I  F  I  I  L  R  G  V  *  D  C  R  Q  W  G  G  R  R  G  C  K  G  G  E  E  E  R  W  A  K  D  *  A  *  G  F  K  S  F  I  K  E  V  N  K  W  C  D  R  R  G  D  I  *  N  C  C  S  S  V  G  D  N  K  N  T  F  D  G  G  K  *  W  T  F  *  Y  *  G  V  Q  *  Y  H  E  D  *  R  M  D  W  I  V  *  G  *  L  C  *  C  D  *  S  C  P  *  Q  S  C  R   : A  F  C  V  *  Y  C  *  *  E  L  V  I  *  T  R  *  P  V  Q  N  S  N  S  C  L  I  S  C  R  S  L  C  R  S  Q  L  Y  L  T  D  I  S  T  *  A  S  E  D  S  V  D  D  S   : E  R  S  L  Q  W  L  I  *  C  I  C  K  N  I  E  R  G  W  A  C  *  A  L  *  R  S  H  S  *  C  Y  R  S  H  S  L  C  G  H  K  L  L  C  L  *  F  I  A  E  S  L  Q  K  D  F  Q  G  R  E  D  W  K  H  R  D  S  S  N  W  I  S  S  W  C  Y  I  *  H  C  N  L  S  S  R  G  G  S  *  A  H  A  G  G  C  C  *  W  K  S  S  L  Q  E  C  N  S  C  S  C  E  Y  T  G  T  G  W  D  S  G  S  V  *  R  A  W  S  Q  L  H  E  V  S  S  C  R  R  N  I  F  H  V  L  *  S  M  Q  E  D  I  G  *  G  R  K  *  E  V  K  E  L  F  Q  K  Y  A  R  Q  R  V  G  K  I  S  L  Y  D  *  V  L  F  I  L  L  H  F  P  D  A  G  N  F  V  L  D  *  A  W  F  V  R  *  E  M  L  I  L  V  L  V  L  F  S  L  L  N  Q  D  N  E  M  Q  F  D  G  K  I  L  P  L  P  L  C  D  C  E  </second_frame>
            <third_frame>   V  *  F  L  Q  I  F  S  S  F  R  F  L  G  L  E  G  R  G  T  E  S  P  L  L  L  I  F  H  P  N  K  H  S  I  Y  R  L  P  S  P  K  I  L  S  I  S  L  Q  K  F  D  L  Y  S  L  I  S  Q  P  L  F  S  R  M  G  F  *  Y  T  H  L  V  K  I  D  S  L  N  V  P  N  C  L  *  V  F  S  C  F  L  K  L  Y  I  E  K  G  N  F  W  F  F  V  R  K  S  R  L  M  A  R  R  D  I  Q  A  F  E  R  K  K  D  G  S  M  S  I  S  H  L  G  L  Q  W  S  L  Q  D  S  N  F  C  P  G  G  L  F  A  S  V  G  Q  M  G  S  M  G  F  G  V  S  S  P  N  P  S  D  S  R  D  E  N  G  G  F  K  L  P  Y  S  D  L  C  L  K  Y  L  S  F  S  E  G  F  K  I  A  G  N  G  E  E  E  G  V  V  K  E  E  K  K  K  G  G  L  K  I  K  L  K  V  S  N  P  S  L  R  R  L  I  S  G  A  I  A  G  A  I  S  R  T  A  V  A  P  L  E  T  I  R  T  H  L  M  V  G  S  S  G  H  S  S  T  E  V  F  N  S  I  M  K  T  E  G  W  T  G  L  F  R  G  N  F  V  N  V  I  R  V  A  P  S  K  A  V  E  :  L  F  V  Y  D  T  V  N  K  N  L  S  S  K  P  G  N  Q  S  K  I  P  I  P  A  S  L  V  A  G  A  C  A  G  V  S  S  T  L  L  T  Y  P  L  E  L  V  K  T  R  L  T  I  Q  :  R  G  V  Y  N  G  L  F  D  A  F  V  K  I  L  K  E  G  G  P  A  E  L  Y  R  G  L  T  P  S  V  I  G  V  I  P  Y  A  A  T  N  Y  F  A  Y  D  S  L  R  K  A  Y  R  K  I  F  K  E  E  K  I  G  N  I  E  T  L  L  I  G  S  A  A  G  A  I  S  S  T  A  T  F  P  L  E  V  A  R  K  H  M  Q  V  G  A  V  S  G  R  A  V  Y  K  N  V  I  H  A  L  V  S  I  L  E  Q  D  G  I  Q  G  L  Y  K  G  L  G  P  S  C  M  K  L  V  P  A  A  G  I  S  F  M  C  Y  E  A  C  K  R  I  L  V  E  A  E  N  E  K  *  R  S  S  F  R  N  M  L  G  K  G  *  G  K  S  L  Y  T  I  E  F  Y  L  S  C  S  I  F  Q  T  L  E  I  L  F  W  I  E  P  G  L  S  G  E  K  C  *  Y  W  F  *  S  F  F  H  Y  *  I  K  I  M  K  C  S  L  M  V  R  Y  C  H  C  R  F  V  I  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98861" stop="98229"/>
                    <exon start="96290" stop="96129"/>
                    <exon start="96028" stop="95555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSCFLKLYIEKGNFWFFVRKSRLMARRDIQAFERKKDGSMSISHLGLQWSLQDSNFCPGGLFASVGQMGSMGFGVSSPNPSDSRDENGGFKLPYSDLCLKYLSFSEGFKIAGNGEEEGVVKEEKKKGGLKIKLKVSNPSLRRLISGAIAGAISRTAVAPLETIRTHLMVGSSGHSSTEVFNSIMKTEGWTGLFRGNFVNVIRVAPSKAVELFVYDTVNKNLSSKPGNQSKIPIPASLVAGACAGVSSTLLTYPLELVKTRLTIQRGVYNGLFDAFVKILKEGGPAELYRGLTPSVIGVIPYAATNYFAYDSLRKAYRKIFKEEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGAVSGRAVYKNVIHALVSILEQDGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEAENEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0050P21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99110" stop="98913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQIFSSFRFLGLEGRGTESPLLLIFHPNKHSIYRLPSPKILSISLQKFDLYSLISQPLFSRMGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 33048 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2203 bytes was the average size of a spliced alignment
$ 16904 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1690 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 64 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 17:30:29
-->
