<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-08 02:10:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327564" ref_strand="+" ref_description="SGN-U327564        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>aaaaatatagccataaaccccttagtactcctcctaaatctccatattagttcaatatttttttctaaaaattatgggatttgggaggtcttttgttaagggaattcactttggtgaaaaaaataaatcaagaaaaaccaaaattgttgaaagtagtaatatcactactactactacttatgtgtgtagagatgagttagataaaaaaaagcctaaaatcaagaaacgggtgagatttgatttagaaccagaagaagaggaaaacgaaaagaatagcacttttgagaaaaatacaattattcaagaggagaaaacaaaagtacaagaaggtgctaatatttcgaatgatgatggggttataaaagtgaaaatcttaatgaaaaaagaagatgctgcgagacttctgataaaatatcgaaacggaggggaacttgagtttatggatattgctcaacaacttgtacaagttccttctagtagtgttaaagttctatagttaatagttaagtatgacaatagagcatctacaatttattttgtacctaactttatgtaataattttagaataaataataaataacttattatattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="7087" stop="5893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6787" g_stop="6191" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-U327564" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6787" e_stop="6191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTATATT</genome_strand>
        <mrna_strand>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313087" ref_strand="+" ref_description="SGN-U313087        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, hypothetical protein, Synechocystis sp., PIR:S76577 | chr4:12420424-12421474 REVERSE | Aliases: T32A16.60, T32A16_60(evalue: 1e-38, score=157) genbank/nr: gi|15236659|ref|NP_194120.1| expressed protein [Arabidopsis thaliana] gi|7487592|pir||T08908 hypothetical protein T32A16.60 - Arabidopsis thaliana gi|4972093|emb|CAB43889.1| putative protein [Arabidopsis thaliana] gi|7269238|emb|CAB81307.1| putative protein [Arabidopsis thaliana] gi|21592640|gb|AAM64589.1| unknown [Arabidopsis thaliana] gi|22135940|gb|AAM91552.1| putative protein [Arabidopsis thaliana] gi|23197588|gb|AAN15321.1| putative protein [Arabidopsis thaliana](evalue: 1e-36, score=157)">
      <seq>aaaaacagattggtggtcagaatttgaaaggacaaattacagtttcccatttctacttttcatctcatcctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaggaaaaaaaaaaaaaaaaaaaaaaactcgagactagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19502" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19202" g_stop="18204" g_length="999"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="999" r_length="999" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1000" polyA_stop="1019"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-U313087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19202" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTTTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317987" ref_strand="+" ref_description="SGN-U317987        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21700905-21705196 REVERSE | Aliases: MYN8.5, MYN8_5(evalue: 1e-61, score=234) genbank/nr: gi|15238754|ref|NP_200156.1| expressed protein [Arabidopsis thaliana] gi|8843773|dbj|BAA97321.1| gene_id:MYN8.5~pir||T34137~similar to unknown protein [Arabidopsis thaliana](evalue: 8e-60, score=234)">
      <seq>tctggggttgacagcccatcaatgtttggctctttggacgacgacagtatagggaagtctaccaatcgtcacagaagaatcaatgatccgactataggaagaatgcaaggaaatgcttggaagggggttccaaattggccgtcacctctggcaaatggtttcatgcctttccagcatggtccacctcctgttggtttccatcccgcaatgcatcagtttcctggaccaccaatgttcggtgttaggccttcaatggacttgagtcaccctggggttccttaccatatgccagatgcagaccgcttttctggccatgggcgcccaatgggttggcgaactccactagatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaaggccagactgggaccagaataggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttgaaaattaatcatgaagagcaaccaattgatgtgaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatgccccttttatattcccgtcttctgttttgtctgcttgctgctctttagctaatcaataaaactcagagttttctttaaaaaaaaaaaaaaaaaaaaactcgagatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="27799" stop="30824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28099" g_stop="28989" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="891" r_length="891" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="975" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30523" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1846" r_length="871" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U317987" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1846</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28099" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</genome_strand>
        <mrna_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTATAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCATCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342577" ref_strand="+" ref_description="SGN-U342577        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pleckstrin homology (PH) domain-containing protein-related | chr4:12422115-12424255 FORWARD | Aliases: None(evalue: 3e-45, score=179) genbank/nr: gi|42573011|ref|NP_974602.1| pleckstrin homology (PH) domain-containing protein-related [Arabidopsis thaliana](evalue: 2e-43, score=179)">
      <seq>ctgctttggaagaaagagaagctcatttaaaagctcaattagaacatattgacgaaatactgcagtctgctcgcatgtcgggttatttgtatctgagaacgagatgggaggctttaccaggcgaacctcttccaatcgatgatgacactgaagttgatgactggcttcctaaatttcttgttcttcagggatcgggtattttcttgtattcatcatccatagatctgagtcctcaagactcaactcttctatctgatgttgttgaagttggagccatgccttgtctgacacgagacaacggtgatactcgatattgcttttttatttcaactcgtcatgggctgagatatgaatgctcaagtgcttccaaaatacaggttgattcctggttggcgtcattaccgaatcattctgatctgcaatctaactgcaccgcgcctgatgagttgaccaatacttgacatctttttctgtcagtattcggtagcaacaacctgtaaatagaccagaaattgaagcaaagacagcattattattcactttggaagtttgattgaacaacttttagcatttatccattattctgtacatagcttatttaactgtcattgtcaagttactactacttgtataaataaaatgtattcacagtttcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="34485" stop="38444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34785" g_stop="34821" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34822" i_stop="35760" i_length="939">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35761" g_stop="35824" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="101" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35825" i_stop="35917" i_length="93">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35918" g_stop="36038" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="222" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36039" i_stop="37204" i_length="1166">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37205" g_stop="37359" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="377" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37360" i_stop="37861" i_length="502">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37862" g_stop="38153" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="669" r_length="292" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U342577" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34785" e_stop="34821"/>
          <exon e_start="35761" e_stop="35824"/>
          <exon e_start="35918" e_stop="36038"/>
          <exon e_start="37205" e_stop="37359"/>
          <exon e_start="37862" e_stop="38153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCAGTATGTTTTGATGCTTTAATTGTGTTCTCTCATTATCTACACTAATTACAATGTGAATTCATAGGTTTACAGCAAAAGCATAAAAGCTTCGGTAAGTTCTTTTTTTCCTTAGGTGACTTGGCCTTTAAACATAGAATCTTTCTATCACATTTATAAGACGTGCAGAATGTGCTAAGGTGGACTATGACATGCACGTATAATGAAACTGCCTTATATGCCCAAACTCTCTACATATGAACTTGCTTCAGTCTTTAGTTATGAAAATCCTTTTGGTAAGAGGACACATCCTGAGTGCATCTTCACATGTGGGTACATAGAACCATCGGGGATAGTTGATAGGATAAATAAGAGACAAATAACAGTAAGCAGGAAGTTCCTGTCATCTGCCAACTTGGGAACTTAGGGTCGAATCCCAGCAAGAGGCGACATTAGATGAATTCTTCCCACCTACCTAAACCTTGATGGCAGAGCTACCTAGTGCCTGGCTGGTTGGAGGCAGCTGATACTTGGTGGACTAGTTGAGGTGCACACGAGTTGGCCTGGGCACTGCCATTATAAAAAGAAATAAATAAAAGGAAAATTTTGGAGTAGGAAATGTGAACACCCTTCAAGATATTGCCGTGAGAGTTCTCTTCAATGAACTAAGACACTTCCGGTCCATGCTTTTAAAACAAGAAAGAACACATTGGGAAAATGAATAATATTGTATTTCTAGGTAGTAGAAAGTTTAGATGTAACTGTAACATGGAATGACTGGCTTTCTACTTGATGAGGAAAGACCTAACAACAACTTACCCAGTGTATCCCATATGAGCTATCAATATGATGGCATCCTTTGGAACAACCTCCAGTATCTTTTATTGAGAATTCATGGATTTGTCTAAAGCAGTACTATTATTTGAGGTTGTGATATATATATATATATCTTTCTATTCACAGATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACGGTACTGAAATACCAAACATCTGTCCTTTTCTTGTTATCTCTTGGACTTATCAGACTTAAATTATGAAATCTTATTCTTGCTTTTGATCGACAGAGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAGGTAATTATACGGGAACTTCCAATTTCAGAAGTCACATTTTTTTTTGGTATTGCCCTATTTTGGTGTAAGTGCATTATTCCAAACTTTTGATGTGTACCATTACTCTCTGTGTTTTGCCTCTTCCCTTTATTGGCCAATTCTGAGTTCCTCATAGAAGGCCAAATCTTCCAACTATTTATCAGGAAAGTCTAGAAATCTCAAACGATGTCTTATAAGCTTATGCTGATTAATGGCATTCATTGTAGTATGATGGACGTCAAATTTGCTCATATAGTTTGACACCCTTTAAGTGTCTCTTGAATTTTGATCGACTTCTATGTGATTTTAGTTATTAGAGATGGAAATTCAAACCCTCAACACAAAGGACACTGTCTCTCAACCTCACAAACCCCTCGTGATCAGGTGGGTGAAATTTTTGTCCACGCCCACCAGTGGGCAGTGGCACTTGCACCGTCCTTGTGGTTTTGATGCAATATAACTGTACTTGTATCTTCCCTATTAATCAACATCAAAATTAAAAATCAATTAAGAATATATACGAGCATAATGGGCGAACAAACAGGAAGAGGGTGAATGGAAACAGACACAAGAATGTTGAAGACAGTGGTGGAAGATATGAAGACACAAGGAGGGAAATAGTTAATTCGTTTTAGGTAGAGAATGGTGTGTTGGTATGCCTAAATAACTTATATGATACCCTCCTCCTGCCCCACAGTCTATATGGTTTGATGAAATTCCAAAAACTCATCCTCCAAACTCCCCTGTTCATGTATGTAGGTGGAATAGGAAAAGTACCTATGGTAAGGGTAGAAATTGTCATCTCTATTTGGTATAGCTCACTGTTAAGTTATATTGGGATTGGCTGACCGTTTAGTTGCATATACATAACTAATAACGAGCTCCATGAATCTGATGTAGAGATTGTCATCTCTGTTTGGTATATCATATTAGGTTATGCTGGGATTCTAATTGCGTATCTTTTAATTCCTCGTGAGCCAATGCATCTCTATCTTCTCTTTGATTTAATAGACGCCCATAATATCTTTAATTTACTTGGACAATCTGATATCAACTAGCACAATGAAGAATTTTCTGATATCTGTTAACACAACAAAGAGGCTATGTCATGAAAACATTTGACTCTATAACTACTAAACATGATACAGATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAGGTAATGGTTGTACCTGGATCATCTACTGCTATTACCTAGTCTTGGTATCTTCTTCTATGTGTTGATGTGTGAAGTTAATAAATAGACCTTCGAGTAAACGCGAATTCATACGCACCTCTACGTGTATATGATCTTTTCCATTATTTCTAGGCATGATTTTATGGAGTACAAACTATCTGTTAGTAGTACTAAAAGTCTTGCCTTGTTCTCTGGTCATGAAATGCTTTATCTGAATCCTGTCTTTTCGAATCAGTATCCCATGAACGATCTTAGAAGTCCATCATCATAAGCAGATGCGAGGAGTATGTCTCAGTAACACACATGTATTTATCAGGAAAGTAGTAACATAGGTGTCAAAGTAGCATGTTATAAGCCTGTTTGTTTGTTCGTTTTAGTGCTTTGCTCTCGAGAATGTTGTCTTCCCATAACTAAAACCGTATCTATAGATTCATCACATTGCTTTCATTATCCCGTCGCAAGCTATAGAATCTTTGTTTTGCAGGTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTATTTCCACTA</genome_strand>
        <mrna_strand>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACG.............................................................................................AGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313358" ref_strand="+" ref_description="SGN-U313358        Tomato 200607 #1 [70 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleoside diphosphate kinase 3, mitochondrial (NDK3), identical to Nucleoside diphosphate kinase III, mitochondrial precursor (NDK III) (NDP kinase III) (NDPK III) (SP:O49203) (Arabidopsis thaliana); contains Pfam PF00334 : Nucleoside diphosphate kinase domain; | chr4:6732586-6734357 REVERSE | Aliases: T22B4.4(evalue: 1e-97, score=353) genbank/nr: gi|15237018|ref|NP_192839.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] gi|6225753|sp|O49203|NDK3_ARATH Nucleoside diphosphate kinase III, mitochondrial precursor (NDK III) (NDP kinase III) (NDPK III) gi|7434629|pir||T01877 nucleoside-diphosphate kinase (EC 2.7.4.6) - Arabidopsis thaliana gi|2829275|gb|AAC00512.1| nucleoside diphosphate kinase 3 [Arabidopsis thaliana] gi|3513740|gb|AAC33956.1| contains similarity to nucleoside diphosphate kinases (Pfam: NDK.hmm, score: 301.12) [Arabidopsis thaliana] gi|4539375|emb|CAB40069.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] gi|7267799|emb|CAB81202.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] gi|14334560|gb|AAK59688.1| putative nucleoside diphosphate kinase ndpk3 [Arabidopsis thaliana] gi|17065632|gb|AAL33810.1| putative nucleoside diphosphate kinase 3 [Arabidopsis thaliana](evalue: 8e-96, score=353)">
      <seq>ctctctataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacggtttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttgcaaagaagcactatcatgacttgagtgagcgaccattctttaacggcttgtgcgacttccttagctctggccctgtcttagcaatggtttgggaaggtgaaggtgtaatcagatatggaaggaagcttatcggagccaccgatccacagaaatctgaacctggaaccatcagaggcgatttagctgttgtagtaggaaggaacatcatccatggcagcgatggccccgagaccgcaaaggatgagatcaacctatggtttaaaccagaggagttggttaattacaccagcaactctgagaagtggctatatggtgataactaagtgaatgtactcttgcattaatctaattaattgccattaaacaggcatgaggggtagcaaactcatatatcaaaataatgccaatttttcctatggcgagtagcaattttacatttagtatactatttaaaatcaccacaataatatgtatttgaaacaatgaacttcatttatgtattgaaacattgaattcattattcttgttccaaaaaaaaaaaaaatacaatgatctatagcaataattggtggggatgcatcatgaagtactttcaatgttaaaactttcgttttattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39207" stop="42790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39507" g_stop="39644" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="273" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="311" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="362" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41809" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="530" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="42013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="643" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42110" g_stop="42474" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="1007" r_length="364" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1062" polyA_stop="1077"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U313358" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1008</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39507" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41809"/>
          <exon e_start="41901" e_stop="42013"/>
          <exon e_start="42110" e_stop="42474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATGGTAAGTAAGAGGATTTTACTAGTCAAGTGTCATTGTATCTCTTTGTCCAAACTATTTCAGCATGAATAACTCCATACACTTTTCTCTTCAGGTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAGGTAATATACAATGATACAACTACGCATCAATCTCAAACGAGTCATTCTGCTTGTATGATTTGTGTAAACATGAGTTTAACACAATCTGCTATACAGGAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGAT</genome_strand>
        <mrna_strand>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG...........................................................................................GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG................................................................................................GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTTCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAAAAAAAAAAAAAATA-CAATGATCTATAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333206" ref_strand="+" ref_description="SGN-U333206        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from Arabidopsis thaliana SP:Q42605, Cyamopsis tetragonoloba GI:3021357 (AJ005082) (Plant Sci. 142, 147-154 (1999)) | chr1:23940706-23943562 FORWARD | Aliases: F15H21.11, F15H21_11(evalue: 2e-13, score=71.2) genbank/nr: gi|37781556|gb|AAP42567.1| UDP-glucose 4-epimerase [Solanum tuberosum](evalue: 2e-15, score=84)">
      <seq>aggcccttttgttcttctccatcttcttagcctccctcttaaaaattcttgaaaattctttcagcccaattaagtaaaaggcaaaaaggtgcaaattttcattattattttttatataaccgtgtttttttttttttttttatatcatatcatacacctataaaagcttggacttaggagtctttgtttcaaacttgacaataacaaaaaaaaaatcagatttttttcttgatttttggaattctttttcaccaaaactcaaatcttgttatataaaattaagggttagtttcttttttaattgttttatagtacaatatgtcgaagagtatacttgtgacagggggagcagggtatattgggagtcacacagtgttgcaattgttgcttggtggttataagactgtggtgattgataatttggataattcttctgaaattgctgcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="49401" stop="50450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49700" g_stop="50150" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U333206" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49700" e_stop="50150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAAAA</genome_strand>
        <mrna_strand>AGGCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318012" ref_strand="+" ref_description="SGN-U318012        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from Arabidopsis thaliana SP:Q42605, Cyamopsis tetragonoloba GI:3021357 (AJ005082) | chr4:6713553-6718546 REVERSE | Aliases: F25I24.170, F25I24_170(evalue: 3e-129, score=458) genbank/nr: gi|37781556|gb|AAP42567.1| UDP-glucose 4-epimerase [Solanum tuberosum](evalue: 2e-150, score=521)">
      <seq>ccattgaggagattttcaggtctaacaaatttgatgctgttattcattttgctggactaaaggcggttggtgaaagtgtcgagaaacctctgatgtactatgacaacaaccttattggaacaattaccctcttggaagtcatggcagctcatggatgcaaaaagcttgtgttttcatcgtcagctactgtttatggttggccaaaagtggttccttgtactgaggagttccccctgagtgctgcaaatccttatggacggacaaagctcttcattgaagaaatatgccgtgatgtacaaaacgcggactctgaatggaaaatcatattgctgcggtacttcaatcctgttggtgctcatccaagtggccgaattggtgaagatccgcgaggaattccgaacaaccttatgccatttgttcaacaagttgctgttggcagaagaaaagagctgacagtttatggaactgattatggaacgaaggatggtacaggggtccgtgattacattcatgttatagatttagcagacggacacattgctgccttgcagaagctatctgatccttccataggctgtgaagtgtacaacttgggaactggaaaaggaacttcagtccttgaaatggtggccgcatttgagaaggcttctggaaagaaaattccaatggttatgtctggtcgacgccctggagatgctgaaattgtatatgctgctactgagaaagcagaacgcgaattgaagtggaaggcgaaatatggcatcgaagagatgtgtagggatcagtggaactgggctaagaagaatccctatggctatgaaggaactccagaatctaataactgtcactgaagtctacttcaactgcataatatcgtcatatagtcgatacgttcctgttgctgcatcgtgttcgaagggacgattcaacgtatagttgtagggctattagatggcattataatgtttatattgtctaacttatataagtttcagaatgtaattggagtttcaatgagttagtagttagattataaaagggaaaatctaagaaagttgatgaataatatttaagcatatagtagtatttcatttgttctttcattccttttttgtttgtataataaaataactatcggcatttgaatctcgttttagcacatcatcattgatttcaactagtttgagattgagacgtaatcgattagtaactaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="51276" stop="66735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51576" g_stop="51603" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51994" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="164" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52076" g_stop="52177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="266" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52511" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="494" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52715" g_stop="52793" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="573" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52907" g_stop="52989" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="656" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53395" g_stop="53486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="748" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53610" g_stop="54074" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="1213" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54075" i_stop="56667" i_length="2593">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="56668" g_stop="56689" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1214" r_stop="1235" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U318012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51576" e_stop="51603"/>
          <exon e_start="51859" e_stop="51994"/>
          <exon e_start="52076" e_stop="52177"/>
          <exon e_start="52284" e_stop="52511"/>
          <exon e_start="52715" e_stop="52793"/>
          <exon e_start="52907" e_stop="52989"/>
          <exon e_start="53395" e_stop="53486"/>
          <exon e_start="53610" e_stop="54074"/>
          <exon e_start="56668" e_stop="56689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGAGGAGATTTTCAGGTCTAACAAGTAAGTTCCAACAAAAAAATCTGTCTTGATTGTTTTCAGGAGACAATTTTTTTCTTCTAATTATCTCAGTATTGAATATAATATAGTTATATTATACACGCTGATGATGGTTTATTGACCGTGTGGTGCATGAATTAAAACTAAGCTTTGAAGAATAGTTGATGAATGCCTGAATCTAGCTTATTGATTCCTTTGCTCAAAATTTATTACCTTTTCGATAAATCGGTTTGGCATCAATTACTTTTTTTTGTGCAGATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGGTATTCCTCGCAATTCGATTAACTTATAAGATGTGTCTCTTTCCTCGAGTCTTTAACTGGTTTTCTTCTCTGCTTCTCCAGCTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGGTACTGTCAAGTGTTTCATCTCGCATTTTTAGCGCTCAAATTGTTGGAAGTCCAGAATAGTCTGTTTATTCTATCTCTTCGTGATCTAACAACTTTCAATTGTCAGCTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTATGACTATATTTACAATAGCAAATCTTTACGTGTTAGATACATTACAACTTTCAATTTACTCAGGTGTCTTTTGCACATGACAAGCTATGGTTTATGATGTCCAGCAATACCGTTGTTTAGTAGTTTGTCTAAATGTGATAAAAAGCTATCCTTTTGTGAGATTTTCCTCGGAGAATAATCATGTCGTGTTTTTTTTTCAGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGTGTGTACTTGCTTGCTATCCGTTGTAGGGTTGTTATTGTGATAGTTTATAGAATTATTCTCCGTTGGCTCATTTGTATTGCTATTTCTGCTGATTTTGATCGATCTTTTTAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAGGTAGTTTTCAATTGCATTCCTCCTCCATGTATCGTTATAATGTTGCATCCAATTCCTCTCAATGGCAGAGGAAAAAGGAAACCACAATTTCCCTCAAGCCGAGAGCTATTTGTTGTTACTAGTGTTTTCATACTAGTGTTAGCTCTTCTCTTTTTTTGGGGTACCGATGCCCTTGTATACTTTTGACTCACCTAGAATAATTCCGTCTCCCACCAATACAGATACGGTAACTCTGCCTATCAAAGCTAAGACAAGTGCCTATCTCTTTCCCATCTCATTTGTTTTTCGTTTTCTACTTCCTCGTGAATAGACTTTGTTAATTATTGAACCTTTTAGTTGTTTTTAAGACCCTACATGAGTGTTTAGTTTGCATTACTTACCTATTTCTGTACTTTTTACCCCCAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAAGTAAGTCATGTAGTCAATAGTTCGTTCACATTGCTTTTCGAGATTCCAACACACTACTATATACACGTACTACCTTTAAACTCTAAATTCGCCTCTAAACACTCCGGTTTATGTTGCTTGTAGGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAACTCTTGTTTTCTATCGAGCTTTGTTGCATGGACCTGTATAGTATGATTTGCATCTCTAATGTAATAATGTCTTAGTATTTGCTTAAATTTAAATTTGCATCGAAAAGTCAGAATTCTTGTTGGGAACATTGATTGTTGAGGGTGAGTAAAATTAAACAGATTTTAAGTGGTTGTAGTTCACATGTAGTATGTGATTTATCTGTCGGTAGTAGCAGTTACCACATTCGACATATGCCATGTGAATATTCCAACAATTATTTTGTTTTCTTTCAAAGTCTTTTTCGAAAAAATATTTTTAAATAGTCGTAATTTGTGTTTAACTAATTAATTTATATTAAAAAAAAACATTTTTTCCTCCATAAACTTGACTAAAAATGATTTTTCAAAAAACAAACACTTTTGTCGAAAATAATAGATAGAAATACACAAATAAGGTCGTTCTAACACTCATTATAGAGGTAAATAAGTATTTTTTTTTCACTTCTCAAAAAATTGACAAACAAATTATATATCTGATTTTCTTTAGTTTAACAGAATTAAAAAAAAAGTCACGATATATATTAAGATGAATGAAATTCTTCTATTTATAACAAAAAAATTTCAAAATTTAAATTAGTCGGCGTACTAGACAAGAAAAATGGACGGTATTGATCCAAAATTGGTTAAACAAACAAACAAAATAAAGAAAGAGATTGTTAATTACTAACATTAGTCTAATTTTAGCTAAAAGGCAAAGTAGTCCCATAATTTCCATTTTGTTATCTATACATCCTGCCAATTTGCTGACTACTCTTTCTATGTCATGTTTCGTGTTGAATAATTAATGTATTTATTTTATATCAAATTTTTTTAGGATTATTGGATCATTATGAATGTTTCGTAGAGGAATCTTCTTCTTTGCTAAAAAGATGATTTAGTGATTTGACTAAGTTTACAATTACTTTTTTTTTTGTAATGGTAGATAATTTTGCACCGACTTAGTTATTTAAAAGTTATATGTAATTGTTTTTAGCTAACATTTGTAAATGAAAAAGACAATTAACTAATTTGATTTTAACTGGTCAATTTACACTAGACATGTAACGACATTTGCACTACCAACAAATGTCAAAATCGTGTAATGTTGTATATATTTTTAAAAAGAAAAAAAGACCGTTTGATATATTAAATTTTCGGTATGCATGAAAAACGAAAAAATTTCAAACCATAAAAGTCTATATTAAGAGGTCTTCTTCTGCAAAATGTTATTTCCAAAGTTTAAACACGTAACCTTTTCCTAATTACATGCCGATAACTTTATCAATTACTTCAGTGAAATATTTTCAGCCAATTAATTTACAGTTAAATGTCATTACCAAAGTTTATATTGGGCCAAATGGATCACTTGGAAGTTCTGTTTCTATGGGCCCAGATAATCGATCTAATTGGGCCAACAAAGTAACTTCAAGCCTTACACAGTAATGGGCCCATTATTCATATAAAGCCCAAAAAAGAATTAAAAAGTTGAAGTATAATATCTAATTTTCTAAAAAGTATTTAATTTTTAGCCAACGTAGCTAAATTTTAAATTGTAAATAATAGCCTTTGGTCATTTACTATGTATACTTAAATATATGCCAGCTGTAACTATTGATTGTTTGTAGTTATTTGAGTTCAAGCCTTTTATATATAGAAAAAAGATCTTCATATTTCAAATATATATTACTTTGAATATGAATATGAAATAGATAAAAATTAAAATATTCAATAAAGATATTAGAATTCAATGTATGATTATGTCATTTAAATAAAAGATACCACCTTTTGTTATATATGGCTTACATCATTGAAAATTAACGATCGTTAAATCTAATTTCATGCTCAAATGTATAAAGCTCGATATTATCAATTTTACATATTTAAATCTGTAAGTTAAATTTGACAGTCTTAAAAATTTAGTTTTAAAATTCTAGCATTTTGAACAAAAAGTCTTCAAAATTCAAATATACTAATTTAAAATAGATAATGATGAAGCCACAAAAATTCATTAAAGTTATTAGAATTAAAATTTATATCATTATCTCATTCATATTTTGATGAATGAATATATATACCTTATATCATTGAGAAATACGGACCGTCAAATCTGATATCATAGTTAAAGGACTGATATTTGAAATGTCCATTCCAAATATTTAAATTTGAAGTTAAATTTTTTTATAACATTAAATCTTAAACTTCAACTCCGTAGAACTGATTTCGAAAACTCCATACACAAATTTTTAACCTTATCAATTAGAGTATGATCTTTGAATAGAGACTCTGAATCACTCAATCAAATGAGATCATATCTTTCACTTTCTCGTAAGTCATTGATTGACTATTTTTAATTTCACTATTTTAACAATGATATTAATAAAAATTTTGATTTTCTATTATGTTATTATTAATCACCACTCCTATTTCTCCCTATATACCTACCATTTGGAGTAATAATAAATATTTGTATGAGTATTAATTATTCTTTTAATATCAGCCCTCCAAGCTGCTATTTGTGCACATTTACCTCAAGGATGAAGGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAA</genome_strand>
        <mrna_strand>CCATTGAGGAGATTTTCAGGTCTAACAA...............................................................................................................................................................................................................................................................ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG.................................................................................CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG..........................................................................................................CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG...........................................................................................................................................................................................................GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG.................................................................................................................GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA...........................................................................................................................GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321921" ref_strand="+" ref_description="SGN-U321921        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, contains Pfam profile PF01764: Lipase | chr4:6713553-6718551 REVERSE | Aliases: None(evalue: 3e-111, score=399) genbank/nr: gi|42566415|ref|NP_567373.2| lipase class 3 family protein [Arabidopsis thaliana](evalue: 2e-109, score=399)">
      <seq>ggaagagaaaagaatattcccacaaaagaaagaagaaaaaataaaaaaaataataaaggggaacttcaatttagcatatttgtagagacaaaaaaccatcaattgttgtaaaaaatcgaaaacaacagttgagacaacatcgtcccacctccttctccaggcccagctgaactttttggaaggtgggttcttgaaaatcttagaaaatggctaccagcaatgacattgttgcagctacaaagggtcaagaagaactaagtgtattaatctcagagagggaaattttcgaccaatgtggacctgtgcacctaactgctattgactgggaaaatgttgctcatcaacgatctgtggctgccagtttggttcagggcgtctacatcctagagcgtgacaagcaagaaaaacggaagggaagtcaagctcttgctcctccatggtggagacatttccaatttgagttatatcgtgtgctcattgatgatgttgattcctgcatttttggtgctatatataaatttgcaccctcaaaatcttattttggcggttccaaagataaaagccaacgatttgtcattgctttccgtgggaccttaaccaaaggtgatgcattttctcgagatatacaattggatatccacatactcaggaatggacttcatcagacttctcgctttgagacagccattcaagctgttcgacatgtggttgcaacatttggaagttcaagtatctggctaactggtcattccttaggggctgcaatggcaatgcttgctggcaaaaccatggcaaagactggtgtatttttagatgcatttttgtttaatccgccattcttgtcagccccaattgaaagaattaaagatcaaaaagtgaaacacgggatcagatttgcaactagtgttataacagctggacttgcttttgctgccaagcataaaaacgtgaataatcaatctggagatacatttgttgcattatctgcatggacaccatgcctatatgtgaatccatcggatcctatttgcgcagaatacattggctattttgaacaccgggaaaagatggatacaatgggagcaggagttatcgagaagttagcaacccaacactcacttggtggtcttgtcttgaatttcatggggaaggagtgtgatgagccattgcacctaattccatcagccaatttaacagtaaatttgactcctccgtcagacttcaaaggagctcatggaattcaccaatggtggaatcctgatttacttgtagagtccaagaaacaccagtttacatgaatgatgatataaaacgaagaccactacaccgatagatggtatgtttgtctattttgtatccctggtcgggtatatttatagttatcaacacattacattttgctcttagcttaatagttgtgccttctactggtgctaaagtttctttacagatgcattgtcatctcttgttaccttctccagttttattcgttcatgtttctatgttttggtgaatctatccatcagttctgtgcctcatcctattacctattgttgagtgttacgaattgaaattgtgcatatactactcattgtattattgataatatttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56333" stop="61659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56633" g_stop="56874" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58643" g_stop="58725" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="325" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60060" g_stop="61359" g_length="1300"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="1622" r_length="1297" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1623" polyA_stop="1634"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U321921" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1625</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56633" e_stop="56874"/>
          <exon e_start="58643" e_stop="58725"/>
          <exon e_start="60060" e_stop="61359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAGGTTGGATCTTGAATAACCCCAATGGCATTTAGACTAAAAAATCAATCTTTTTGATGTTTCTGTCATTTTTCCCTTAAAAAGTTGCATTTTTTTTGTAAACCTAGCATGTTTGTTTCAAAGATTGTATCTTTTTTGTAATGTTTGTGGTATTTTTGTTCTCTGTTTTTCATTGATCCAACTTGCTGGAAAAAGGGTATTTTGTATTTCTATACCTTGACAAGTGTCTGAGCAAATGCTACTAAGTAGATGATCCATGGTAGATGTTTCATTTCACTATTCAGAGTTATATTTGTAAGCAAATGTTACTATTTGGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACTTAATATGGTAAACCCCACCACCAGAATCGTTGCATTCAGGTTCCTTGAGTAGCTATTTTGTACTTTACTAGGTGTTTATGGTTTGAGATAGAGGGTCCTTAACATTAGGCTAACCCCTTGTCAATTGGTATATATATGTTTATTTAGACTATTTAGAGTTATTGTTTGTGATCTATGCATTAGATAATGGTTTGAAGGTTGAGGATTGGGGTAGAAGGTTTGTAGGTAGCGAGTGGTGTAGCACCTTTAAGGGGGAGAGTCAAGAGGTTAGTCTCCTCTGCTACTTTTCTCTTTTTTAGTAGTATTACAATTTAGTAAACGAGTAGTCTTCTTTTAGTTTTTTGTTTTATTTTTACTTGTTGCTTCATTGATTGTGTCCATCTCGCCTCTTTGCTATATTTACTTTTTCTAGCCTATTTGATATTGCTATTTTGTTGTCATATTATTCTTGCAATTATGTTTCGATAATTGTTTTTCTAAGCTGATGGTCATTGGAAATAGCCTCTCTACCTCTAAGGTAGGGGTAACGTCTGCGTACATCATACCCTCCCTAGACCTACTTGTGGGATTACTTTGCATATGTTGTTGTTGTTGATTGCAATGCCCCTCCAAGAAAAATATTTGATTAGGGTAGTAAATGGTAACTCTGAATCTCTGAGAATCATGTGAAATGGGAATTAACTTTGATGACCGTCTTCTAATCTAGCTATTGGCTCAAGTTCATACAGTGGTGCATCGTTATACGTAATATAGTTTGTACCAAATAATGAAGTTGGTGAACTTCATTTAGCAGCTCACTTCTTGCTTAGTGGCACTTTTGATGGCAAGGTTAAACAAGTGTTTATGGATGCATAGCAAAACAGAAGAATGCTGAAGAAACTAGAATCTGAACCCCCAGGAGATATACTCAAATATGAATGTGAAGTTAGGTATACTTATAATTTTCTTTATAAACCAATAAGAGTGCTATAAGAGGGGATATGCGGGATTTTTGTCTAGGGACACGACTATATGAAATGATATCACTGTTATTTGAACCATTCTATTGGGACAAGAACCATTGGTTAGAGCAAAACCAACCCATTAAAGCTGGACAATTCACCCACAAATAAATTTGTGGTTCTCACACTTGGATTGTTGAGGTTTTGACTCTGCGTCGTCCCTTTTGTACAAGTTAGGTAATAGGGTTGGTCTTGCTAGAAGCTTTTTAATATCAATTATTGTGCGTGTGGAGAGTAGGCTGAGATGGGGTATAAGAAATTACTTGACTACTCTTAGCTGGACGACTTGATGACTCGTCAAATTTAGAAATTATTCATGGTGACAACAGTCTACTTAATTTGTTCAGATGGAGTTTCACAACTCTTTTCATGATCGTTACCGTTGTTGTTTCCCCATTGTGTTTTGTGCAGGGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTGGTGTGTAAGTTCTTTTCCATGTTTATTTAGTTAAATAAAGGTTTTGCATATCAGAAAGGTGCTGGAATAAAACGAGATATAATATTGGATAAACTTCTAGTTATATATGGAACACTCTAAGATTACTGGACAAAGATGTAATATATTTAGTATTGAGGAGTTGGGCATATATTGTCAGGAGTTAACAGGATTGTAGTGCTCATGGATTTCAGATCTGCTTGCCATTGTACTAAGTTACAAGTCTTATACTGCCATATCTATTGAGTTCTTGCACATGAAGAAGTCGAAACATCAAGTGTCTTGATCCATACTCACATTACTACCTCCATTCTGGATTGATTCTTGTCTTTTCTTTAATAAATGTCGCAAAGTAAATCCCTTTATAATAATGGATTTCTCTCCCCATTGTACCCTTTTTCAAGTTGTTTGTCTGAACTGAGTAAATCAGGGTATGTCTGTCAAATATAACATCATAATGAGAACCTACACCACTTCCCCTGAATGAAGTATAAGTAGGTTTGGGATGGGGAGAGTGATTTTGCCTTTATACCTTGGATCTACCAAATAAGAGCGCCTCCATGATTTTAGATCACTTTGCTACAGTTGTGTAAGTGCTCTAATATACCTTGTACCCTATCATTTTAGTGGCGGATCCAAGATTTTCACTAAGGGGGTTCGAGAATAAAATGTAGTGGCTGGGATTCGAACTTGAAACCTTAAGGTAAATTTTGAACCTCTTTAAATTACTGGGTCGACCTCTAGTCTAGTATTTAGGAGATTCAAAATCTATGTATGAAAATAAAAAAACAAATACTATATACATACAATGTAACTATTTGTCGAGGGGCCGGAGGGGATTGGTGAACACCCTTTGTTTCCCTAGATCGTCCCTGCCTATCTAAGATGAACATGAGCTTAACACTTACTCCGTGGAATTGGACATAATTTACTTTGGTCGCACTACTATTCCTAAAGAGAGAGAGCCAAATTCTCTTAGACAATTTGGAGATGTCATGCCTGCATTTGCCTAAATTAGCATGATATTGTGCTTAATAGAATGTGTGTTATGCAGGTTCTCTTCTGGAAATAAGTTTCCTTGATCTTTCACCCAATAAACAAAATAGATACAAGAAACAAAGAAATATAGAGGAGCTGACATTAGCTTGAACTATATGCATTCATCATCTTTTCCAAATCATGAAGCTTAATGCTATTGTTTGGCAACACTACTCTCTCTCATGCTGCCCGACACTTACTCTTGCTTGAAATCGGAAGTGTCGAGCCATTTTACAGAAACAGTTGTCATGATAATATTGTTCTTCTACCTAATGCAGGGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTATAGAA</genome_strand>
        <mrna_strand>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCAGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCAACTAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGTTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGAATTCACCAATGGTGGAATCCTGATTTACTTGTAGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACGAAGACCACTACACCGATAGATGGTATGTTTGTCTATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTTTGCTCTTAGCTTAATAGTTGTGCCTTCTACTGGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTT---CTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326330" ref_strand="-" ref_description="SGN-U326330        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, hin1 protein homolog, Oryza sativa, PIR:T02662 | chr4:12436010-12436706 REVERSE | Aliases: T32A16.100, T32A16_100(evalue: 4e-43, score=171) genbank/nr: Harpin-induced(evalue: 8e-51, score=203)">
      <seq>tgggtacgggcccccctcgagtttttttttttttttttaataagaaaaacattttttttacaattactctgaaaatcactaccaaacacaaaaatacactaaaccaaaaaaataataattaaaactaaaaaaactaataatttgcgagctattacatttgagcggatttttttttagttaaataaaataactaacagtggaaagccgtaacagatccatcactgacagaaatatcaattctacattcagctttactctccacatgatgtgtaaaaaaatggagcattctaacccgacccgccatttccaatctcgactccacttccatactagatccgacccgaaacccactcagcccatccgtcaccgtcggcccacccacactctccggttgtccattcaccgttaacggaaacgccttcaccgaaaacgtcgccgccatatactgagtccgacccgaattaatttttccggcgggtacaaacatgaacccgattcgattacccgaataaagtaactgcagggaactgtcatagtgagcaaattcatcgtgatttgggttttcgattgagacgtattgagaaaatgtgaagttcacggtgccgttcgaggcggagaaagagggaagctgaatggagttaacggtgataatgggggatttaggtttgaaaagagtgaagtaaaggatgaagatgatgatgaagatgaagattaagaaaattgttgcaactatacatgaagctaaatttgtacgtccacttggaggtttacgagatttaaccatttttattttctgtgaagaagaaattcacaaaaatgttttgtttagagaaaaagacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="56905" stop="66273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64610" g_stop="64646" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.459"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64647" i_stop="65168" i_length="522">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65169" g_stop="65973" g_length="805"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="842" r_length="805" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U326330" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326330" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64610" e_stop="64646"/>
          <exon e_start="65169" e_stop="65973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACATTCCTCTTAAAATCCTTCATTTTTATGGCATGTTCTTTTTTACTTTTCTAATTGTAGTTTTGCATTTTTTATTAATCAATAAATAATAATCATTAACTTTAAACAGAAAGAAACAAGGATTATCTTTCCAGCTAATGCTGATCATAAAACTCAAGACACTATGGTCTTCTTTATTATTTTTTAACAAAACTAACAATAGGATTTTTTTTAATAAATCAAATTAAGTGATAAATATTCATTCATCATTAATTTAAAATTTTAGATTCAAATCATTTTTATCAAAAAGGTTTTATATGGAACTTTCTAAACGTAAAATTAAAGACGAATATGAAATGCAAAGTCGAGAGTCATTCTAAAGCAGTCTCATTACCATTACAAGATGTAGTTAGTTTCATATGCTCTTCACAATCTTCACTAATAAAATTACATTAAACATTATAATATAAATATCAAAATTACATTAAACATTATAATATAAATATCAAACGTTAAAATTCAACAATAAACAAAAAAAAAGAATTATAATAATATATCCAACAATAAAGCAAATAATAAGAAAAACATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGATTTAGGTTTGAAAAGAGTGAAGTAAAGGATGAAGATGATGATGAAGATGAAGATTAAGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCTGTGAAGAAGAAATTCACAAAAATGTTTTGTTTAGAGAAAAAGACAAG</genome_strand>
        <mrna_strand>TGGGTACGGGCCCCCCTCGAGTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAGAAAAACATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGATTTAGGTTTGAAAAGAGTGAAGTAAAGGATGAAGATGATGATGAAGATGAAGATTAAGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCTGTGAAGAAGAAATTCACAAAAATGTTTTGTTTAGAGAAAAAGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328451" ref_strand="+" ref_description="SGN-U328451        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylinositol 3- and 4-kinase family protein, contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase | chr1:23947162-23948343 REVERSE | Aliases: F1N19.4, F1N19_4(evalue: 2e-14, score=75.5) genbank/nr: gi|50907073|ref|XP_465025.1| phosphatidylinositol 3- and 4-kinase-like [Oryza sativa (japonica cultivar-group)] >gi|47847959|dbj|BAD21748.1| phosphatidylinositol 3- and 4-kinase-like [Oryza sativa (japonica cultivar-group)] >gi|47847951|dbj|BAD21741.1| phosphatidylinositol 3- and 4-kinase-like [Oryza sativa (japonica cultivar-group)] (evalue: 4e-14, score=80.1)">
      <seq>gtagagacaggacttacaccatttgacatcggaaatatgatgtgcagggaaaccttgaacaaggaatctgtaatcgaggaaatcattcgtgatgctgaagattctatgcttcctggcatgactgaagctacatttcttgaaactgtctacaagctcatggatatcaagcttgagaagctaaaatataaatcttcctaaggattgtaagtatgtatcttcaattctgttgtatgtatatagcgttcggtccatatatatatataaatggactgaatggagataggaaaggttgatgactgaccttgtctgtctatggtcggaaacctttttccctctcaacttctgctcattaccaataatggtggttcttcaaatatggagcagaagttgcaatatgcaataaataataaataaaacaaactgttatttgtaaaacagttgtcatgtatcctttctcaatgagtaaagtgatactgagttttatgtacaaaagctatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="67824" stop="56902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67524" g_stop="67020" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65924" g_stop="65912" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="515" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-U328451" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67524" e_stop="67020"/>
          <exon e_start="65924" e_stop="65912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAA-GGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAATGCCTTCTCTCAGTAAGCAGCACTAACACTAACTTGTGAAATTTTATGTTTACTAAAGGATTTTAGTTAGCCTTGGCGCAATGTTAAAAGTTGAGCTCATCACGCGTGGCTTGAAAAGTAAAAGTGAAAAATGAGGTAAAAGATACCTATTATAAATAGTTTTTGAAGTATAAAATTGCCTCTCTGTCTCCCATATTTGATGAAATGAATCTCCCTTTACTAAGGTAAAAGAAATCCATGACTAAAGCAATTTTTTTCTAGCATTATAAAAACTTGAGGTACAACTTTTAAATTCATTTAAAAACTTTTATTCTTCTATCTGCTTTTGAGTCCCATGTATGGACTTATCCACTTCAAAAAAGAAATAAAGTGAAAAGTAATTAAATTGTGGTCCAATGGTTGATTAAGTTAATGAATTTCATATTTAAATTTTACTAAATAGAATAATAAATACTTTTTCTTTGGATTTTTTGATAGTTCATTGGAAAATGGTTATGCTAAGTCTTCATTTGCATTAGGTCCCTTTGCATTATATAGAATTAAGTTACTAACACATGAGTAACTTAAATATTGCTTCCGTTTCAGTTTGATTGTCTTTTTTTTTTTTTAGTTCGTTTAAAAAAGAACATTTTCAAGACTTACATTTAGTATATATTTAATTTAAGATCGCGAAATTTAAAAGTCTTTTTATTTACTTATTCTTCATATCAAATCAAAACAAGACAAACAAATTAAAACAAAAACGATGCACATATTTTCCTAATTAACTTGTATGTTACTAATATCAATATAACTCAAATACTTACGCTAATACAAAATAATACATATACACTAAATTTTATCTAAATACGTATGTAATATGTTACTATAAAATTTTATCGAGATACACGTAAACTGATCCGAACAAACCATTACTCATTCCCCTCAAAGAAGTGACAAAAAGAACAGAAATTACGCAAAAAGAAAGTCCACATTTTCACACACACTCTTTATATCACTTTATTGAACCCAAAAATCAACACAAATTCCATTTTTTTTCCCCAATCACTTGTCTTTTTCTCTAAACAAAACATTTTTGTGAATTTCTTCTTCACAGAAAATAAAAATGG</genome_strand>
        <mrna_strand>GTAGAGACAGGACTTACACCATTTGACATCGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCC--ATATATATATATAAATGGACTGAATGGAGATAGGAAAGGTTGATGACTGACCTTGTCTGTCTATGGTCGGAAACC--TTTTTCCCTCTCAACTTCTGCTCATTACCAATAATGGTGGTTCTTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAACTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAGTTTTATGTACAAAAGCTATCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332670" ref_strand="+" ref_description="SGN-U332670        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G24240.1 | Symbol: None | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain, Pfam profile PF00454:  Phosphatidylinositol 3- and 4-kinase | chr5:8231113-8232928 REVERSE | Aliases: MOP9.5, MOP9_5 (evalue: 2e-94, score=342) genbank/nr: gi|15237921|ref|NP_197812.1| ubiquitin family [Arabidopsis thaliana] gi|10177083|dbj|BAB10389.1| ubiquitin [Arabidopsis thaliana](evalue: 2e-92, score=342)">
      <seq>ggtgaggaacttaaggttcaagagctattctgtaatggtgagaagcttgaggatcagaagctcatcgatgatattactgctgatgcagtgattcacttggtagttcagaaatttgcaaagcttcgggctaagcatgccgagagggatgttgaactttctgttgttgcagctaattggcatgaggagacccaaagtcagggtgaacatgaaccatccagggagttacagtccttctccaagaagacacctgatacaaatttggtgttggaaccttttgttgttgatccaaatgttgaacttccaggatatatctgggacatgatcaactctgcatgtgatggattgacgaaaggcaatatacctatccgatcatctgaagggactggaggaacttatttcatgcaggacgggtctggcaacaagtatgttgccatttttaagcctattgatgaggaaccgctagctgtgaataaccctcaagggctacctttatctaccaacggtgaagggttgaaaaggggaacccgagttggagaaggtgcattcagggaggttgcagctttccttctggaccatccaaggaccgggcaacgaacattgtccaattgtgagataggcttttccggtgtgcctcccactgttatggttcagtgcttgcacaatacatttcatcatcctgatggatttgagtggtcatctgaatataccaaaattggctcactgcagctgtttatgaagaatgaaggaaattgtgaggatatgggtccagggatatttcctgttgaggaagtccataagattactgtctttgacataagaacagcaaatgctgataggcatgctgggaatattcttgtgagcagggaagggaaagaaggacgaatcgtgcttacaccaattgaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="69456" stop="67951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69156" g_stop="68251" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-U332670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69156" e_stop="68251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</genome_strand>
        <mrna_strand>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321617" ref_strand="+" ref_description="SGN-U321617        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, similar to F-box protein family, AtFBX7 (GI:20197899) (Arabidopsis thaliana) | chr3:20945794-20946996 FORWARD | Aliases: T5P19.120(evalue: 7e-05, score=45.1) genbank/nr: gi|50919165|ref|XP_469979.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|29150381|gb|AAO72390.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-07, score=59.7)">
      <seq>ctgtattaaggcccaaaaaaatagttgaatttcccaaagttttaatctcatcttcctcttttaattcgccgcccttgactacatctacttcaaaaactttaaatttatatgtcttatatctatgaagctccggatgatgagcaaatcgggtaataaataatagtttatctgatagctggaccaggtaatattgaactgaaggctgcagaaatatgtcatgttcggaccaataaagcaagtgtggctctactgcgtttggtttgggagtagcaggccctggaaaacccaaaattcaccactagctgtaacataatagaatttacccttataataattgatacccatgacagcacccgaattctccatctcaatatttgttcaactgagatctccagaaagccaagcgagtaatatttgcgtgatagttaaccacgagtacataatctgaggtaacacaaggacttgcagataagatagcatgctctagaaggttccagaacacttcatctccgagaccattagaagccattaagttatctcgtgaaggaagttgaatttgggtacgagacaaatgatgcaacaagttcatctctccggtagtatcatccatggtgcagagccatccttccgagggaaaacaatatcgttgtctagcttcggggagaaacaaaggagtaactttctgcttgataagagagtaaaattctcggcaatcatcatgtttgtcagccaacataagtaaaggagttttggtaaaaaagatatcaaatttatggttaggggtagtagcaatttgccaagaggtacaaacacaagtaaagaataggaaatctttaggtgattcaatacgatttgcaatcatagcaaggagatccatcgataattctgcccagccgcctgccatgaagaagaacgagttgtagttctatttttttttttggttacaaactgcaatatatattggcgcaagttttcctatttttattcgtatttctatattaataaggattttgaacaagcccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="93751" stop="95379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94051" g_stop="95085" g_length="1035"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1035" r_length="1035" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U321617" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94051" e_stop="95085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAATATTTGTA</genome_strand>
        <mrna_strand>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328568" ref_strand="+" ref_description="SGN-U328568        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G23940.1 | Symbol: None | FtsH protease, putative, contains similarity to zinc dependent protease GI:7650138 from (Arabidopsis thaliana) | chr4:12437118-12441978 FORWARD | Aliases: T32A16.110, T32A16_110 (evalue: 2e-53, score=205) genbank/nr: gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana] gi|7484842|pir||T08913 cell division protein FtsH homolog T32A16.110 - Arabidopsis thaliana gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana] gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana] gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana](evalue: 2e-51, score=205)">
      <seq>aacaaattgcagagctaaaaggactccaattggttcagtaaaaatgcttcttcacaaatccaaaatctcagttcaatgagtatcagttcagtaaacatgtctttttcaacaggtaacaattttatatcagcaaggtccattcttcatccaaagcccaacattcagcttcaaagttcattcgtaatcaaatccccatttcagaaaagttatacaaatcctatttttcatagaaatttcagaaaaagatcacatttttaccattccccatatgcaattcttggaaaatggaggtctaattcgaagtcctctgaagaaggggcaagcaataatgaagattttgtgactagggttttgaaagaaaacccaagccaagtggaacccaaatatctaattgggaataaactttacactctaaaggaaaaagaggatttgggtaagaagggtttattgaatggtggtgttttggagatactaaaaaggttaaatattaaaggaatggtgaagaatggaagtgatgagggtagtttaatgaagtctggggatgtgtttttgaaggatattttgagggagtataaagggaagttatatgttcctgagcaaatttttggtgctaatttgtctgaagaagaagaatttgaaaaaaatgttgaagatttgcctaagatgagcttgaaggattttcagaagtatatgaaatttgataagataaagttgttgacttttaaagaggatactggagcttctttgggattggggtctagagattttattgttgagttgaaggagatgcccggagagaagagcttgcagagaactaaatgggcaatgaagctggatcaaaatcaagctcaggctttactagaggagtacactggggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="95781" stop="97332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96081" g_stop="96901" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96902" i_stop="96974" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96975" g_stop="97033" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="880" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U328568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96081" e_stop="96901"/>
          <exon e_start="96975" e_stop="97033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATGGTTAGTATCATAAACTTGTTCATTTCTTTCACTTCAGATTATAGATTTTGATGTTTATGTGATCATTCTACAGGGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGCCAA</genome_strand>
        <mrna_strand>AACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATG.........................................................................GGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322962" ref_strand="+" ref_description="SGN-U322962        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT4G23940.1 | Symbol: None | FtsH protease, putative, contains similarity to zinc dependent protease GI:7650138 from (Arabidopsis thaliana) | chr4:12437118-12441978 FORWARD | Aliases: T32A16.110, T32A16_110 (evalue: 0, score=837) genbank/nr: gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana] gi|7484842|pir||T08913 cell division protein FtsH homolog T32A16.110 - Arabidopsis thaliana gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana] gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana] gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana](evalue: 0, score=837)">
      <seq>tatggcaaggcatagaattctctcagtcaaagccacaagcacgtgttgatggttcaactggagtcacatttaatgatgtagctgggattgaggaagcagtggaagaacttcaagagttggtaagatacctgaagaatcctgaactatttgataaattggggatcaagcccccacatggagttcttctggagggacctcctggatgtggaaagaccctggttgccaaggcaatagcaggtgaagctggtgttcctttttaccaaatggcgggttctgaatttgtggaagttctagtcggtgttggttctgctcgtattagagatttgttcaagagagccaaggtgaataaaccatcagttatcttcattgacgaaattgatgcactcgcaaccagacgtcaaggaatatttagtgaatcaactgatcacctctataacgcggcaactcaagaaagggaaactactttaaaccagttgttgatcgagctagatggatttgatactgggaaaggtgttatattcctaggggctacaaatcgaagggatttattagatcccgcccttcttcgtcctggtagatttgatcgcaagataagaattcggcctcccaatgcaaaaggaagattggaaattttgaaagtacatgcacggaaagttaaattatcagatactgttgatttgtctagttatgcccaaaatttacctggatggtcaggtgcaaagctggctcagcttctccaggaggctgctctagtagcagtcaggagagggcataactcaattcttcattcagatatggatgatgcagttgatcggcttacagtaggacctagacgagttgggattgagttgggtcatcaggggcagtgtcgtcgagcaattactgaggtggggactgcattgacttctcatcttctgaggcaatatgagaatgcagaagttgagcgttgtgacagaatatctatcaatccgcgtggccagaccttgtctcaagttgtgtttcaccgtcttgatgatgagtcatacatgtttgagcggctaccacggttgcttcatcgtcttcaggtatttcttggagggagagctgctgaagaggtcatttatggacgtgatacttcaagagcatctgtaaactaccttgctgatgcatcctggcttgcccgtaagataatcacaatatggaatatgaaaaacccaatggccatacatggagaacctcccccctgggtaaagagagtgaagtttgtgggtccacgcctggactttggaggatcactatatgatgattatgacttaattgagcccccgatcaactttaatttggatgacgatgttgctaagaagacagaagagctcatatgtgacatgtacgggaagacagtaactcttctgaggcagcatgatactgccttactcaaaacagtgaaggttcttctgaatcggactgagatcagtggagacgagatcgacttaatcctgagccactatccaccaaatacacccacaagtcttctgctggaggagagagatcccgcgagtcttccatttgttgacgaaaagcaagaacagcataataacattgagtacagtctgtcttcatgagaaaacggaatccttgatccaggctttctaccctattcgaagccagttttgacgtgcattcggaacacgaaatattacagctgagaactttctgacaaatagtgagacgctaaaaatgcagtttgtttgctgtatgaatccatatctataggaattttgttaaaactgttgatttattcttctgtgatttttgtatttcagtatattactattgaagaggcaaaatcttcacaacaaaattaatataagaaaagtagttgaattacactgcagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="99044" stop="103997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99344" g_stop="99393" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99394" i_stop="99494" i_length="101">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99495" g_stop="99560" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99561" i_stop="99931" i_length="371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.111" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99932" g_stop="100027" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100028" i_stop="100114" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100115" g_stop="100243" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="341" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100321" g_stop="100373" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="394" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100689" g_stop="100884" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="590" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101588" g_stop="101702" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="705" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101909" g_stop="102183" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="980" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="102184" i_stop="102403" i_length="220">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="102404" g_stop="102487" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1064" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="102488" i_stop="102582" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="102583" g_stop="102695" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1177" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="102696" i_stop="102768" i_length="73">
            <donor d_prob="0.483" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="102769" g_stop="103018" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1178" r_stop="1427" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="103250" g_stop="103694" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1428" r_stop="1872" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1873" polyA_stop="1895"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U322962" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1872</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99344" e_stop="99393"/>
          <exon e_start="99495" e_stop="99560"/>
          <exon e_start="99932" e_stop="100027"/>
          <exon e_start="100115" e_stop="100243"/>
          <exon e_start="100321" e_stop="100373"/>
          <exon e_start="100689" e_stop="100884"/>
          <exon e_start="101588" e_stop="101702"/>
          <exon e_start="101909" e_stop="102183"/>
          <exon e_start="102404" e_stop="102487"/>
          <exon e_start="102583" e_stop="102695"/>
          <exon e_start="102769" e_stop="103018"/>
          <exon e_start="103250" e_stop="103694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGATGTGAGTTTCTAGTTTCTCACACTCTCTGGTCACAAAAATTCACAACTTTTCATCTGTAGATTATGGCCAATATTTTGTCTAAGTAAGAAGTTTCTGTTTAGGGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAGGTAACAGCGCCTTACACCACATATAATACTTCCTTATTGTGTATTCCCTCCATCCCAATTTATGTGATGTAGTTTGTCTGGGCACAGAGTTTTCAGAAATACGAGAAGTGTTTGCCATATTCCAAAACTACCCTTAATAAATGAATTTTTATATAGAAGAGCACATCTTTGTAGACTTTTTGCCAAATAAGTGGTCCAATATGGGTAAAGTGTTGATAGTGTCATTAAACATTTACCAAAGAAGGAAAGTGTGTCACGTAAACTAGGATAGGGAGAGTAATATTCTCTTACATTATAATGTGTGAAAGCTTGTCCCTCAGCCACAACCTTTAGCTTAATGGTTCTAATTCCTTCCATTTTTTGCCAACTAGTTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAGGTATGCTATCCATTTCAGACCTTAGATTGGATTCCCAAAAAAAAAGTAGAGGGTCTTCACTAAAATTATATATGATGCTTTTCTCAGACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAGGTGAGCATAATACGTAGTCAATGAACCATGTGACTTCCCTTATTATGTTTTGAATAATGCCCTAATTGTTGTCACAGGTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAGGTATGGATATTTGTCTAAATAAGTAATGGTGAACGTGTTTTTTTTTTACTGGTTTAGCTTAGCACAAAGGAAAATCTGGAGCTGAAGCATCTGGGCATTTTTCATCTAAGTAACCCCTTTAGTGGTAGAACTATTGAAATTGGGTTTTAGAACCTGAAGTTACTAATGTCATGTTGTGGACAATGCTAATGTCGTCAGTGTGTAGCTGTCTAGATATTCTTTTTAATCGTAAAGAAATAACTTAGTCATTCATAAATGACATGTAGACACGTGCAGTGGTTATAGTTTCTCAGACTTATTATTCTTAATAAACAGACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAGGTTTGTTCTCCTATTGAATTGAATTCTTTATCAACTCAGCTCCTCATGACTTGAATCACTCTATTCATGTTCTGTCGGTATGTGCGCATTGGTCGGGAGGAGGTAGACAAAATTTTCCATGTTTATAGAACATTCCTATTCATGATGTCTTGACTTACTGATTCTTTCCATAAAGATGTTTCTATATGCTGAATATTTTGATAAAAACTAATCAATCCCCCAAAAAGGTGTTATGATTCCACAACAAACTCTGTAATACAGTATGTTATTTTATGCAATGCCTAGTGTACTGCAAAGTTCCTTTACGAAGTCCTTGGATGGGGCTACTGTATTTGGGCTTTTGAATCCTAATAGGTGCTGTTTATGGGCAAAACATTGTTTGACTTGGAAGGTAGGAATCATTTTTTCGTTTCAGTCGACTTGTTAAATATGTTGAGACGCCGATAGCTTTTGGTAGATTCTATAGAGAATAAGTACCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTACCTTACCTTCTCAAAAATAAAGGGTGCCCTGAACTTAATATAACATCATAAGTATAGTTTATTTGAGATAATGAGTCAGCTTAAGAAGTGTCGAATTACTTATAGTAGCTATGTAATCTTTATTCCTCACTTCTTTCTGGAACACCACATTTCATGCTTGTTACATTTCTCTCTTTCAGATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTGGTATTCAACTTTATTTCCTTTCTGTTCATATGAGATCATCTTCAGGCCACTAGTCTTTTGCTCCCATGACTCTAAAAGATTACTTTTCTCTGATGCCAGTGGAAGATGAGGGTTAATGAGATAATTCATCCATAATTTTCTTGCATTATAGTGATCTCATTTTAAATTCTGCTCCTGATCTGCTAAATGGTGATCTTGCAATTCAGGATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAGGTTTGTTTCTTCTCTAGTTGCTTCATCTTTGAACGTCATCTTTTGCACCTCACTCTTTTTTACTCCCTCCTTTCAACGTCATCTTTTGCACCTCACTCTTTATTACTCCCTCCTTTCCAAATCTAACATGTAGTGATCGTGTCTTGCATACGTTTTTACTGGAGAATTCAACTGAACATTTGTTTCCCATGGTTGCTGAAAATTTAAAAGTGGCATGCAGACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAGGTGCTAATATTTGAAGTCTTATGCTGATTTTTTGCTTGCACTTTTTCTTCCTTCATGCAAAGCTGATGATTGCATTATGTACATCTTTGAACAAGGTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAATGTACGTATTTATTAGTTATGATTTAGTTGGTGTTGCTGTATCTGCCAGAGCCGTGACTTTTTCCTATGAACAGATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAGGTAGTTCTCGACACGTTGAATCAGTTATCTTATAGACTTGTTTTTCGAAATTTTTCATATCCTTAACTTTGCAGTAACTCCGTTGAATAAACTTGATATTTTTAATGCTTCTTTTTAGAAAAGGCTCCACCAGTTGTGCATAGATTAGAAGTTACTTAGGTCCAAATTATTTAGTATAATTTAGTTAAAGCAGATGCAGAGATCATTGATTCCTGTTCATGTTTATCCTAGGTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</genome_strand>
        <mrna_strand>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGAT.....................................................................................................GGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAG.......................................................................................ACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAG.............................................................................GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG...........................................................................................................................................................................................................................................................................................................................ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG..............................................................................................................................................................................................................GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAG............................................................................................................................................................................................................................ACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAG...............................................................................................GTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAAT.........................................................................ATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG.......................................................................................................................................................................................................................................GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGACGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326130" ref_strand="+" ref_description="SGN-U326130        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:8098756-8101338 FORWARD | Aliases: None(evalue: 5e-70, score=261) genbank/nr: hypothetical(evalue: 4e-68, score=261)">
      <seq>ctcgtaacatcgtatacaacgatgtagtctccaaacctcagctgtctttgcggctcttcgtttctattttctgtgccattctgcttttctattctatgttcgtttatggatatggagggatttctcttgcctatgctgagactattaccaattatagtgttaaagatatagagttcaacagctccactcaaccacttttagaaagcggagggaagagtagcaaaactgaaatgctattggaactcaacatatcagttaagattaatgattcttgtagtcctacggataacattgcaacccctgagcattcactgcagaaaacaagtgcattggaagatgcagtttcaactattttaggttacaatatgttaatatgccaaatgcagccacaagtagtgcatatccatcggaatgaaggtcgaatactcaatggaagaagtcacttgacctatccaaatctggaagaattcagaagcattacaaaacaagaaaagagagggagcaccgcaagtcagttagtaaatatcacccacaggcttgagcctgatggtacgccttacaattatgcctcgtcatccaagggtgctaaagtggtggcccataataaagaagcaaaaggagcaaacaacgtactgaacaaggatcatgataagtatctcagaaacccttgttctgtggccgggaaattctttgttattgagtttgcagatgaaactctagttgatgcagtcaaaattgcaaattttgagcattattcatctatgctaaaagaatttgagttatcagggagtttggtatatccaactgagacgtggaatccactgggaacttttgttgctgaaaatgtcaagcatgctcagtgttttaagctacctgaaccaaaatggattagatacttgaagctaaatttactcacacattatggctctgaattttattgtactatcagttttatcgaggtatatggtattgatgccatagagcagatgcttgaggatctcatcgtccattcccccgagtcttctcctgataaaatgggaaatcttaacaaaactactatgctgtctatgataccagattcaggttctgactaccatgaaacaaaggatgtcgtccaaaatgtggttgagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="104006" stop="107090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104306" g_stop="104422" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104423" i_stop="105772" i_length="1350">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105773" g_stop="106790" g_length="1018"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="1135" r_length="1018" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U326130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1135</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104306" e_stop="104422"/>
          <exon e_start="105773" e_stop="106790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAGGTAAAATTTCGTATACCCATTTGGGTTTTCTTTCATTATAATGATCTTTTCTAACATGGGTAATTTGAAAAAATAATTAAAATCCACCCAAAAAAGAGATTTTTATGTGAATGCTGATGATCCTTTGTTGCTTTCTTGTTAAGTGTGTTGTTAAATGAACATTTCAGTGTGATTTAGCTCTATTATATGTTTAAAAAGAGTTACTTGGGTATAAGGTGTTTAAAAATTTAGCTAATTTAGATCTAGGAGGAGCTTAGTAGAAAAAAAGATCCTTTGTTGCTCTCTTGGTGACTGTTGTGTTGAATGAATATCTAGTGTGATTCAGTGTTATTGAATGTTTAAAAAGACTTGAGCAGATACTCGAGTCGGGGATCTATAGGCTCTTTACCTCAGAAGGTTGGGTATGGTCTAAGTACATTGTACCTCCTCGAACTCCATTTGTGGGATCAGGGTATGCTGTTGTTCTTGGCACATGATGTTTTAACAAATGTAGCTAAGTTAAGAGATTAGTAGAAAAAAGAACGTTGTAGGCGACTATCCTCTTAGATGAGAATTTAGTGTGATTCAGTGCTATCAAATGCTTAAAAAGATTTACTTGGGCGTAGGCTGTTTACAAATTTAGCTAATATAGCTCCATGAGGAGCTTAGTAGAAAAAAGATCCTTTGTTACTTTCTTGGTGACTGTCATCATGAATGAACATGTAGTGTAAGTCAGTGCTATTAGCTGTTTAAAAAGACTTACTTGGGCTTATGGTGTTTACAAATTTAGCTAGTTTAGTACAAGGAGAAACTTAGTTACAGATGACTTAGTTTTTCTTTTTTCAGTTTTCATTTTTTTATTGCTAGTCATCTTTAAGAAAATCAAGTGAAGTCTTCTAATGCTTGAAGTTTGTTGCTTATGGAGTTAGAAAGTAAGTGAATAAGTATTAAAAAAAATCTGTTTTTATAGATTTATAAACCTTGTAATGTGTAAGAGACAAAGATGATATATGAGATGTATTTATTGGTTTGGCATAAATACCGGGCATGAGTAAGCTTTTCTCTTATTAGATTCAATTTTCCTGTGATGCTTTTAGTAGCTTATACTGTTCTTTTTCTTCCCTCTGATTATCGTGTTGTTTGTTCAAACTATTTCGCTTTTCACGTTTGTTGGTCCTTCAGCTCTCACCCAAATGTCAATTTCTGAAGTTTGAAAACTTGAAGTATCTAATTTATGTTTAAGGGGCTTGAGGCTAGTTTAGTATATGGAGCATAATGTATCTACACAGAGCAAATCGGATAGTGATAATCTTTTAAAGCTCATATATTAGTTTTTTGAATGATATATCGTTCCAATGGAATTTTGTGCAGGGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAGACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</genome_strand>
        <mrna_strand>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGATTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAAACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341454" ref_strand="+" ref_description="SGN-U341454        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttcaaacccaaaaaatgtcaaatcattaatacctttacctacaatatagagaacttacggatgataattctacatataaaagtgtgtaagaggagatcagtagtaacacattcacattaaattctaacttctctatccttcatattaaagatctactagacctaaaaggccacctaatgccttcatgtgatagtgacaggaagactctgtactacataaaaagattactgaagcttacaccctattgttagaactgaaaaagttgatatgaaggaataaacttacattctttaataggagaagtctttcaatattccaataaagtaataggtagaaataataggagtattcaacttttaaagtatagaaaagatatcacttttctctgttagactatgactatgagtacttgatcctttctcaccctaagatggagttaatcgtgtaatctttaggtggtatatgtatacaacgtgtgaaatgcactgagcttctaactttaaagttgttatctttaatgtctgatgctttcggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="111523" stop="110382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111227" g_stop="110685" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-U341454" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111227" e_stop="110685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCAAACCCAAAAAATGTCAAATTATTAATACTTTTACCTACAATATATAGAACTTACGGATTATAATTCTACATATAAAAGTGTGTAAGAGGAGATCCGTAGTAACACATCCACGTAAAATTCTAACTTCTCTATCCTTCAGATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCTTTCATGTAATAGTTACAGGAAGACTCCGTACTACATAAAAAGATTAGTGAGGTTTACACCCTATTGTTAGAACTGAAAAATGTTGATATGAAGGAATAAAATTACATTCTTTAATAGGAGAAGTCTTCCAATATTCCGATGAAGTAATACGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTGATCGTGTAAAAATCTTTAGATGGTATATGTATACAACTTGTGAAATGCAGTGAGCTTCTAACTGTAAAGTTGTTATCTTTAATGTCTGATGCTTTCTGT</genome_strand>
        <mrna_strand>TTTTTTCAAACCCAAAAAATGTCAAATCATTAATACCTTTACCTACAATATAGAGAACTTACGGATGATAATTCTACATATAAAAGTGTGTAAGAGGAGATCAGTAGTAACACATTCACATTAAATTCTAACTTCTCTATCCTTCATATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCCTTCATGTGATAGTGACAGGAAGACTCTGTACTACATAAAAAGATTACTGAAGCTTACACCCTATTGTTAGAACTGAAAAA-GTTGATATGAAGGAATAAACTTACATTCTTTAATAGGAGAAGTCTTTCAATATTCCAATAAAGTAATAGGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTAATCGTGT---AATCTTTAGGTGGTATATGTATACAACGTGTGAAATGCACTGAGCTTCTAACTTTAAAGTTGTTATCTTTAATGTCTGATGCTTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322961" ref_strand="+" ref_description="SGN-U322961        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains Pfam PF00646: F-box domain | chr4:6702766-6704618 REVERSE | Aliases: None(evalue: 3e-84, score=308) genbank/nr: gi|18413398|ref|NP_567369.1| F-box protein family [Arabidopsis thaliana] gi|30681602|ref|NP_849357.1| F-box protein family [Arabidopsis thaliana] gi|16604597|gb|AAL24155.1| unknown protein [Arabidopsis thaliana] gi|20466027|gb|AAM20348.1| unknown protein [Arabidopsis thaliana] gi|21536887|gb|AAM61219.1| unknown [Arabidopsis thaliana] gi|26450596|dbj|BAC42410.1| unknown protein [Arabidopsis thaliana](evalue: 2e-82, score=308)">
      <seq>gggcgattggcggccaatcggccgaattgaactccagtaatacaaatagggtttcaaaattgaattctccgaaaccctaatcggtcttttatgaacgtcgacgacgagtttttcatgacttatgaatggatattagttttttctccggcgccgtcacgttaatctgttgttttttcgccgtcgctgccgcttgtttgactcaccgatcaaaatcggtgcggacgaagggcggagaggattcctgcaactgtgcttgttcgcatggtagttgtggaggaggacgttttgataagacttcggttttgaacggagggagtagtggtagtagtgtttttggtggttttgaggaagaaatggttgagaaagtgtctgtgacagtggctgcggagaaactgacaggggcgtcgatgatggagcagcttgttcctgaaattacgacgcatgcgttgagctatttggattatccgagtctttgtaggctttcgatgacgaattcgcttatgaggaaggctgcaaatgatgataatgcatggaaagctctctatcacaaggatttcacattggagcaggattctctgtctccaattaatggatggaaggcttactatgcagctacaagagccattatgaatgtcaatgctgatttttttaatattattagagagagatcagttccagctatggaacgtttttggctcaatgcagattacgtgaagtgttttcatgcctctggagagtgctttacgggtcacaatgcagtcattggtagctggcaactggcttttaactgggagcagaatgttgattttgaaattagagacgtgaaggcaagagtgatgacagattcggcttgggtgactatgaaagcttatcttaatatgggatcagggaccgtgactaacgggtttgaactccataatgggagatgggacatggtccatcatccctggtcagtgatggtcattcatggaggtgctgggcaacaagctgtgcagggataggattaaaaaagacaaactgtgaaaaagattgattatttttttgaaaattggaaagtggtatagagatcgtttatagtaaaattgacttccccgggaatttccataaaattatttttatgtagttcctgcttcctttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="116635" stop="131039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116939" g_stop="117460" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="551" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117461" i_stop="120178" i_length="2718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120179" g_stop="120375" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="748" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273">
            <donor d_prob="0.068" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122649" g_stop="123041" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="1141" r_length="393" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123042" i_stop="123308" i_length="267">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123309" g_stop="123332" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1165" r_length="24" r_score="0.625"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123333" i_stop="123743" i_length="411">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123744" g_stop="123752" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1166" r_stop="1174" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U322961" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1145</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116939" e_stop="117460"/>
          <exon e_start="120179" e_stop="120375"/>
          <exon e_start="122649" e_stop="123041"/>
          <exon e_start="123309" e_stop="123332"/>
          <exon e_start="123744" e_stop="123752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAATACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAGGTATGCCTCTAAAAGTTACATGAAGATGTAGTTTTTTTTTCAATTATTAGTGCTATCTGCATTCCATATAACATATCAATTGTATTTGACTGGATATGCTTAAAATGTTATATTTAGATTATATACTAGTGTTGTATTAGTGATAGTGGAAGAAAATTATTAATACGACAGTTAATAGTTAATAAATGTTAAATGAAAGTTGAATAGCTAGCTTAATAGAGTGAAAACCCGAGGGAAAGACTTAGATAGTCCTTTTAAATATGGATATAGTGGTATCTTTTGTTTATGTATACTACTAAATGTAAAACATCCTCTTAACGGAGTTACAAAAACTAACGGAAAAAGCCTAAAGTCTACAACGGCAATGGTTAAAGTAAACAAAAGAACCACCGATGTAAGAGAAGTTGTGTTTGCAGTCCATAATGAAGAATTACTGCTACCAAAACTCACCTTTCAGAAAATTCATTAAATGTAAAAGGCCAAAATGCATAACAAATTTGGGATTCTAATGAAAGGTCCCACTTCTTGGATTACATAAATGTCAAACTAATTCTCGGAGGTTAAAGATTTAACCTTTAATTTTTTCCCCAAATCTTTTGCACTTATAAATGAAGAAAAACATAAAACATAAAAGGGTTAAAAAAAAAAAGTAAATAATTTAGAACTCCACACTTACAGGTATCTCCTCTTCCGCCATTTTCTCAGAAAATCCCCAGAAGAAGAAGAAAAATCTATTGCAGAAATTATCATTTGAACATTAGGCATAATATTATTCTTGAAATTTGTAAGAACAAAAAGATACCATTCTCTCTTCTCATAATCAAATTTCCGTTTACGTCTTCCGCATTGCCACTCGTAATCAATATGAAAACATAGATGTCACCATGAAAAAACAACAAACAGCAGAAAAACCTAACAACCTGTTTTTTGCTAGTTTTAGCAACTCTGTTTAGAGGGAGACCAAAACTGACCTTCAAGATTTGTGTGCGCATTTAAGGGGACATGGGAATGTGGTTGTGAGGATTGGGTTTAAACTTCTCCTAGGAGGAAGGGCATTAAGTTTGACTTTTAGGAAGCCCTATCATCCTGTTTCCTGCTAATTTCCAATATTGCAAATGTTTCCTTTTACTTATAGATGAATAATCAGCTTTTATGGTACTCCGCGTCTTCCATCAGTCTAGAGAATACGGGTCTCTCAAGGGGTCGGGAACACTGTTAGCTGGATTCCAAATCAAAGAATGCAGACATGGGAACTAAATAGATAGCTTGGGGCACGGGAGCTTCCCTTAAGAGAAGCGTTCATTCATATGGCAGATGCATCAAAAGATTTTTTGAGCCTAGTGCACCTATAATTGTTATTATTATATATATTATTATTATTATTATTTTATATGAAAAAGTAGCTTAGTACAGGATCAACAGGTGCCATCTGTTTAGTCCTTTTTGTTGTCTCAAGAACACTGAAGCTATGATTCATCCATCATTGTCTTTTATTATGGGCTAAATGTTTTACTTTCTCCTTCCCAACAATACGGAATTTTGAAGTAAAAAACTGCTTAAAGTTAATACTCTGAAGTTTAAGTGTTAGAATTGCTAAATAGTTGTGCCAAATTAAGGATGTAACGCTTATTTCATGCATCACATATTAGTCAGTTCTTCCTACCGGCATTTTGTATGCTTAGAATTCGGGGTGCATACCCTCTGGTATACCATGTACCCCAAATTGAACACTCCTCTTCTATATGGCATACCTACCATGTAGAAATTTTAAAAATACACTCTTTTTCATAAGCAAATTAGATGCACCAGACTCCAGAGAGGGGAATTTCATGGTAACCAATCACAAGAGTGGGTTGGGGAGATTCCGTGGTATATACGGAGTACAGTAGAGTCGCTCCAAAGAGTGCTTAACAAGTGGACACTGCACATTGACAATCAATATAAGGGAAACATATTCAACAAGTATACAAAGAGCTCAACATTCAATACTCAGTGTTAACTGCACGTGAAGGGTATAGAAGGACAGTAAACTCCAGTGTTTCTTTGTGATACACATGTATAAAATATGTGAAAGAGCTCAACCTTTTTGATAAAGATGTTATAGAGCTTTCCCTTTGTCAAAAGTGAACATTAATAGAGCTATTTGTCCACAGGAATAACACGGAAATTTTCCTTGGGGGTGGCGTAGTAGTGTGGACATGAGAGTATCAACTTGGAAATTCTAAATCAGAGTCCCAGCCTATCTGCTCCAGCCTTGGTGAGCAGGATTACGTTGTGAACCTTTGCTTGTGGGATACCTTGGCAAGATTAGTCAAGGTGTGTTCTAGTCAAGAAGAACAACAACACCACAATCAAAAAGAAATATGAGAATTGTTTTACTTCTGTTTGCTACATCATTTTTTAATTGATTTTGATTTGCTTGGAAACTGGGAGGAAAGAAACAGAAGCTGAAAGGAGTTTACCACATAAAAGTATACCTTGTAGAATGCCCTTTCTGTATCAGACAAGTATGTCTATCAGCTAATGATGTGTATTTTAGATCAACGATTCTGAGCCCCAATATTTTTCCATCTTCAGGAAAAATAAAAGGTGCAACAATCCCTCTTACTTTTCTTTGTGGACCATGTACTTTCTTGTTCTACATGCATTTTGGATGTTGCATACATGACTTGAAATGTCTGTGTAGTGATTGCCTTTTGTTTTCTCCTCATCTCTTAGGATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGGGTATGAGTTTTTCCATCCTCCATGGGGGATCATCTTTTGAGCTTTTCTACTCTATATCTTTGCACCTTGCATGTCTGTCGTCTTGTTCTCCCTTTCAAACCTCTATTTTTTTTTGTGATTAAATTCTCTATAATATTTTCATATGACAAACTTGTGATGCCCCCCCACCGCCACCCCCACCCCCGGAACAACCAAGTCTCTCGACTTTGGTTCCTCTGGGCATTGCGTCTTTTGTTGTCCACTTTTAGGAGGTTTTTGTATGGTCTTTTTCTTTTTTATTTGCATAAAGGTTGAGTTCTTGTTGGTTAGTTTGGCTGGAAACCTACTTTTACATATCTTATCAAAATTTCTACTTCTATATATTTGAAAAAAAAGAGAACATACCCCTCCTCCTAGGGTATAAATAAATGCACTGAATTAGCTTCAAACTTATTGTGTTATTTTTTTTTGAGTACAACAAATCCCCCCCCCCCCCACCCCCCCGCTGAACTTGGCGCTAAAACTTACTGAAGTACTTGACAATTTTGAAGTGATTAAATGTCACCCTAAGAGATGCAAAGTAAGTAAAAGCACGTGAAATAGTTTTTTTAAAAAATTGAATGGTTTATATCATACACATGACCTTTTTTTATTGGCCAAAATTTAACTAATAGTTTTAAATTTTTCTATAAGTTAATTTATTAATAAATGTGAAATTTCTTGTTTAAAGGTAAATGAAATTTGTGGGTTCAATTTTTTTTAAGAAAATAAATAATCATTTTGTTTTCTCTTTATTTTGTTGTCTTCCCCATTTAAGCACTTCTTATACCTTTCTTCTTCCATATAAGTCATTTTTCCAACAAGTTCATCTCTCACCTCACTAGTCATTCATCAATCCACAAAACCCAACATCTAATTGAAAGTAAATTCCTTGAATTTTAAGTGACCCATTTTGAATTCTATATGAAAAAAAGTGGGTCTATCAACTTTCTTATAGAACCTTCTTTTTTCATTTGAGTTGTTAAAAAAAATACTTTCAAAAAATATCATTCTCCAATGATAGATTTGTAGGAGAGGGTTCGAAGAAGAAAAAGTATAAATGCACTTTTTTTTTAAAAAAAAAATGATGAATGTTGAAGAAAAGAACAAATATTGAAGGCCGAAAGTGGTTGGGAAAAAAGAAGAAGCCAATGAAGGCTGAAAATGGTGAAAAGAAAAGGGGGGGGGGGGCAGTGGAGTGGAAGAAGGGGGGGTAATTTTGATTTTAAAATGCATTTTAAATTTATTGATAAGTGTAATGTATTTTAAAAAATGTTTAAAAAAAGGGTGAATAAGAAAAAAAAAGACTAAAAATTAATGATGTAGTGCTCACATGGTAGTGACGTGGCGCTTACATGGCTATGATGTGGCAGGTGAGAATGGTATTCACTTCAAAGATGTTAAGGGGGGTATTTTATCACCTGTGCAGTTTAAGTGCTAAAGTAAGTTGTGTTGCCAAGTTTAGGGGGATTTGATGTATTTTCTCGTTCTTTTTTCATATTTGTTTTTGTGTGTAGCTTCTATCTATGTTGTTGGTGTGAGGGTTTCCATATGTTTTATATCATTAAGGTCTTGGATAGATGCTTGGATTCTTGCACATGGTAATTTGAGTCAAACTTAGTGAGCCTGATACCACAATTTTTCTTTACTTGTATTTAGGCTTCTTTCCCACAATTAGTCCTCAATACCATTAACTTTGTTTTAGCCAGTCTTTGCGTGTTGATCCTTCTCGTTCTATCCCAAGCACGCTCTTCCACCCATTAGTTAACCTACTCTTGAGGCTCATTCTTCAGCTTGTCAAGCTACTTCAATTTTGTAAAAAGAATAAGAAGACAAGGTGAAAAAGAACTGTCCAAACACACATCTAACCCTGCAATTGGATTAGCCATACGGGAGGGTATTAGAAAATATATCTGCCTGATGCCTTTCTGTTCCCCTCCCCCCCCCCCTCTAATTAGCTTGTTCTAATTTGATATTGGTTTGTTCTACTAAGATGCTACCGTCATCATAGCAATTGCAAAGTCTTTAAGTATTGGCAGCTCTCTCTAATGCAAGTTCACTAGAGTAATTGAATGTTTTTTTGTGACATGTTTACTTCCCATGTCCTTGTATCGTCCAACGCGTCTAGAATTTATTCGCCAATGCAGTTATAATGCAATTTACTGACTAGTATGTTTTAGCGTGAGACATATTTCATTTTTATGTGTTTACATATCGTTGAACACACATGTTGAGTTGCGTATCTGGCAATGCAGTCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGATCAGGTACCGTGACTAACGTGTTTGAACTCCATAATGGGAGATGGTACATGGTCCATCATCACTGCTCAGTGATGCTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAGAAGACAAACTGTGAAGAAGATTGATTATTCTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAGAATTGACTTCCCCGGGAATCTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCCATCGTTTGATAGTTAGATATCACTAGTTTCTTGCCATTGAATTTTTGGCTTTGCTAATTTTCTTGGCAATACACATGCACAGTTTGACAAAGTGAAAATGTCCAAAATGTTTTTGGTCTGTCTTGTATCAGAAGGTACGCGTAATCCTATCGTCAAGAGTTCTTGACTATTGCATCAGATAACAGGTTCATCTTCTAAGTATTTTTCCGGATTAACGACCCTAAAGGAGTACCAAAATGAAAACTATATGTCATCTTTAATCTTCACATAAAATACAAAAGTAACTACATAATTTTCTTGTGTAGCAAAGAACGTGGTACAAATGCTATCTTTTCGAACTAATATAATATAGTTGTTTACTGAAAATAAAAAATATATTCCATAGGTCAATTATTATTTCTTTTTTTCAAAAAACAAAATGATTTTTTTTGTTTTCCCTTTTCCTTGGTGTCAAAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAA</genome_strand>
        <mrna_strand>AACTCCAGTAATACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGATCAGGGACCGTGACTAACGGGTTTGAACTCCATAATGGGAGATGGGACATGGTCCATCATCCCTGGTCAGTGATGGTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAAAAGACAAACTGTGAAAAAGATTGATTATTTTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAAAATTGACTTCCCCGGGAATTTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCC...........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320351" ref_strand="+" ref_description="SGN-U320351        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to unknown protein (dbj:BAA92898.1) | chr5:16836215-16837423 REVERSE | Aliases: MJC20.18, MJC20_18(evalue: 6e-31, score=131) genbank/nr: gi|56783951|dbj|BAD81388.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|56783848|dbj|BAD81260.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-29, score=132)">
      <seq>aaatgatgtccaataacaaacattatcaccatccataaggttccggggactgagcacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaattatactagctatgttgttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123195" stop="125845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123495" g_stop="123819" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="568" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125545" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="868" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="869" polyA_stop="885"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U320351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123495" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</genome_strand>
        <mrna_strand>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321772" ref_strand="+" ref_description="SGN-U321772        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional coactivator p15 (PC4) family protein (KELP), similar to SP:P53999 Activated RNA polymerase II transcriptional coactivator p15 (PC4) (p14) {Homo sapiens}; contains Pfam profile PF02229: Transcriptional Coactivator p15 (PC4); supporting cDNA gi:2997685:gb:AF053303.1:AF053303 | chr4:6697672-6699189 REVERSE | Aliases: F25I24.130, F25I24_130(evalue: 4e-49, score=191) genbank/nr: gi|15236980|ref|NP_192830.1| transcriptional co-activator (KELP) -related [Arabidopsis thaliana] gi|37079408|sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP gi|25456224|pir||T52114 probable transcription co-activator KELP [imported] - Arabidopsis thaliana gi|2997686|gb|AAC08575.1| putative transcriptional co-activator [Arabidopsis thaliana] gi|3513735|gb|AAC33951.1| contains similarity to RNA polymerase II transcription cofactor p15 [Arabidopsis thaliana] gi|4539366|emb|CAB40060.1| putative protein [Arabidopsis thaliana] gi|7267790|emb|CAB81193.1| putative protein [Arabidopsis thaliana] gi|21554027|gb|AAM63108.1| putative transcriptional coactivator [Arabidopsis thaliana] gi|29028806|gb|AAO64782.1| At4g10920 [Arabidopsis thaliana](evalue: 3e-47, score=191)">
      <seq>gtaatcataaaaacctaaatagagcgagtgttttcatctacttccccaattgagcgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaaaatgaggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125674" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125974" g_stop="126409" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="542" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="787" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="806"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U321772" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125974" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329222" ref_strand="+" ref_description="SGN-U329222        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttttttatttgttttctgatatttttatatataagaagaaattacagtattattttaatataatataagcaaaagaagggaaaatcagttgagaatgttgcttaggaaactttattgtcatattttcattatgaaaaagagaaaaaacatttctctttatatcaaaattcaaaagttccatccacaattagagttacattacttttcaattcattttatttcctcatggttaaggataattgatgaagagtaacaatgataacatatatatgccacgtgtcctcttaagatccattcatccaaaatcttgtctaaattcttaattggttgtctaaataccaattggcaataccaaacaccacatatatcatttttaaaataccaaactactatccatatgtactcctcctaagttagttccatagcataacttagaaaaaacttcaaaaaaaaaaaaaaaacatatttctttgaaattcaaagaaaattttttcaagtaggggttgggcctcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="129973" stop="131092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130275" g_stop="130792" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U329222" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130275" e_stop="130792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTC-AAAAAAAAAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAA</genome_strand>
        <mrna_strand>TTTTTTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTCAAAAAAAAAAAAAAAACATATTTCTTTGAAATTCAAAGAAAATTTTTTCAAGTAGGGGTTGGGCCTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lYG6yv/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321713" ref_strand="+" ref_description="SGN-U321713        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutaredoxin family protein | chr1:23956896-23958155 FORWARD | Aliases: F1N19.7, F1N19_7(evalue: 3e-76, score=282) genbank/nr: gi|15217659|ref|NP_176631.1| peptide transporter -related [Arabidopsis thaliana] gi|25342046|pir||G96668 protein F1N19.7 [imported] - Arabidopsis thaliana gi|6633811|gb|AAF19670.1| F1N19.7 [Arabidopsis thaliana] gi|15810443|gb|AAL07109.1| putative peptide transporter protein [Arabidopsis thaliana] gi|27754251|gb|AAO22579.1| putative peptide transporter protein [Arabidopsis thaliana](evalue: 2e-74, score=282)">
      <seq>aaaaaaacatatttcattgaaattcaaagtaaattttttcaagtatgggttgtgcctcatcaaagagaataaaggttgccatcgacgtctaccgtcctccgccgacgagcttcgccgtcttcgatatcaactccattgaagaaccatggctcaaaagtgcaaacaacaacaacaaggtagaagaaaatgagttggatcaggacgagctagacgaagatgagaagccaataaaagtagcacaaccaattctagaaaaactcaacacttctattgatgattctccaaaatcatgggatgaagttagcaaagctttagaagatttaaaacccactctacaaaacccaccaccacaaaaatcacctaaaaaacccctccttgccctaccggcgccgcctccgccgccatcagaggcggcggaagacggcgacggttcaccaaaaagaaaaattccaagaaagagtttttcctttcatacccttgaagaacttgaatccaaattatcatcaaaagatgccaaaaagaacaatgaagtgatcaagaaaaatgaggaaaataaaaaattccaacgattcaataaaaaaaatgatacacaaattgctgttcataatggggaagtagaacatcaaaggactcactcagatgaagggtacaagccagtaaaagagaatatatttttgttgagggacaaaatggaaagggaaaaagaagggaaagttccaaattttataaagtttaaccctttaagtgactaccccgaaaagtgcccgccacgtggcgatgactcattggtcatctacacgacgtcgctaggtggcgtgcgtcgtacgtttgaggattgtaataagttgaggttaattttggaatcccatagggtggttttcgacgagcgtgacgtggcattgcatggcgagtttcgtcaggagctgaaggagttgcttggagatggggaggacgcgggagtaccgcggttgtttgtgaaggggaggtacattggtggagtggaggaagtggtgcacctgaacgagacgaagaaactcgggaggatattgaattgggctagggtggagaggggtctggggaggttaggatgtgaagggtgcggaggtgctaggtttgtgccatgttttgattgtggagggagttgcaaagttgtgaatggggatgttaaggagagatgtcctaagtgtaatgagaatggtttgattcattgccctatttgcaattgaataattgttatgtattattgtacgcatacattaaatcaatgaatacatagtgatgttgttactttgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-cwW9d/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="130429" stop="133013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130729" g_stop="130904" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130905" i_stop="131593" i_length="689">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131594" g_stop="132713" g_length="1120"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="1296" r_length="1120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-U321713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1296</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130729" e_stop="130904"/>
          <exon e_start="131594" e_stop="132713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAGGTATTGTTAGTTTACAACTTATCAACTTTCAAACACAAAAGAGTAGGAGTGATAAACTAATAAGAATTGAACATTGCTCCCTTAATCTCAAATTATTTGTCGTGATTTTTATAAATAGGTGTCTCAAGATATAATTAGTTTTTCGTTTTATCTTTAATAGTTATTATTTTTTAAGACTATAAATAATTCACAAGAATAAATATTTAATGGAAGAGAGATTATTATATCTTAATACTTAAATAAAGGTAAATGGTTCAAAAATCTCTTTAATATTTTTAAAAAATGTGTAAATAAGAAATAAAACAGATAATTTGGAACAGAAGGAGTATTTGTTATTGTAAAGGTTTTGCCTATATTAAGCTTAAAACGTCGCATACAGTACATAACTTTTATATATACATAGATATTCTAGTTAATTTTGTATTGTATTGAATAATCCCTAGAAATTTGATATTTGTTTCATTTCCTAAAAGATATTACTATGTTAAAGCATTTATAAATACAATTGCTGTCCCAAATCAAACGTTAGTGGACTAGAATTTTAAAAAAGAACACTGATTATGTGCGTATGGACTATAGTATGATGTTTTCTTAATTTGAAAGACTATTAATAATTTTATGTATATTTTTAAATTTAATTTATTATCTTGATAATTTAATTTGACATGATATATTTATATTAAAATTAGGTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</genome_strand>
        <mrna_strand>AAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6787" PGL_stop="6191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6787" e_stop="6191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6787" e_stop="6191" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6787" stop="6191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATATAGCCATAAACCCCTTAGTACTCCTCCTAAATCTCCATATTAGTTCAATATTTTTTTCTAAAAATTATGGGATTTGGGAGGTCTTTTGTTAAGGGAATTCACTTTGGTGAAAAAAATAAATCAAGAAAAACCAAAATTGTTGAAAGTAGTAATATCACTACTACTACTACTTATGTGTGTAGAGATGAGTTAGATAAAAAAAAGCCTAAAATCAAGAAACGGGTGAGATTTGATTTAGAACCAGAAGAAGAGGAAAACGAAAAGAATAGCACTTTTGAGAAAAATACAATTATTCAAGAGGAGAAAACAAAAGTACAAGAAGGTGCTAATATTTCGAATGATGATGGGGTTATAAAAGTGAAAATCTTAATGAAAAAAGAAGATGCTGCGAGACTTCTGATAAAATATCGAAACGGAGGGGAACTTGAGTTTATGGATATTGCTCAACAACTTGTACAAGTTCCTTCTAGTAGTGTTAAAGTTCTATAGTTAATAGTTAAGTATGACAATAGAGCATCTACAATTTATTTTGTACCTAACTTTATGTAATAATTTTAGAATAAATAATAAATAACTTATTATATTATATT</gDNA_template>
            <first_frame> K  N  I  A  I  N  P  L  V  L  L  L  N  L  H  I  S  S  I  F  F  S  K  N  Y  G  I  W  E  V  F  C  *  G  N  S  L  W  *  K  K  *  I  K  K  N  Q  N  C  *  K  *  *  Y  H  Y  Y  Y  Y  L  C  V  *  R  *  V  R  *  K  K  A  *  N  Q  E  T  G  E  I  *  F  R  T  R  R  R  G  K  R  K  E  *  H  F  *  E  K  Y  N  Y  S  R  G  E  N  K  S  T  R  R  C  *  Y  F  E  *  *  W  G  Y  K  S  E  N  L  N  E  K  R  R  C  C  E  T  S  D  K  I  S  K  R  R  G  T  *  V  Y  G  Y  C  S  T  T  C  T  S  S  F  *  *  C  *  S  S  I  V  N  S  *  V  *  Q  *  S  I  Y  N  L  F  C  T  *  L  Y  V  I  I  L  E  *  I  I  N  N  L  L  Y  Y  I </first_frame>
            <second_frame>  K  I  *  P  *  T  P  *  Y  S  S  *  I  S  I  L  V  Q  Y  F  F  L  K  I  M  G  F  G  R  S  F  V  K  G  I  H  F  G  E  K  N  K  S  R  K  T  K  I  V  E  S  S  N  I  T  T  T  T  T  Y  V  C  R  D  E  L  D  K  K  K  P  K  I  K  K  R  V  R  F  D  L  E  P  E  E  E  E  N  E  K  N  S  T  F  E  K  N  T  I  I  Q  E  E  K  T  K  V  Q  E  G  A  N  I  S  N  D  D  G  V  I  K  V  K  I  L  M  K  K  E  D  A  A  R  L  L  I  K  Y  R  N  G  G  E  L  E  F  M  D  I  A  Q  Q  L  V  Q  V  P  S  S  S  V  K  V  L  *  L  I  V  K  Y  D  N  R  A  S  T  I  Y  F  V  P  N  F  M  *  *  F  *  N  K  *  *  I  T  Y  Y  I  I   </second_frame>
            <third_frame>   K  Y  S  H  K  P  L  S  T  P  P  K  S  P  Y  *  F  N  I  F  F  *  K  L  W  D  L  G  G  L  L  L  R  E  F  T  L  V  K  K  I  N  Q  E  K  P  K  L  L  K  V  V  I  S  L  L  L  L  L  M  C  V  E  M  S  *  I  K  K  S  L  K  S  R  N  G  *  D  L  I  *  N  Q  K  K  R  K  T  K  R  I  A  L  L  R  K  I  Q  L  F  K  R  R  K  Q  K  Y  K  K  V  L  I  F  R  M  M  M  G  L  *  K  *  K  S  *  *  K  K  K  M  L  R  D  F  *  *  N  I  E  T  E  G  N  L  S  L  W  I  L  L  N  N  L  Y  K  F  L  L  V  V  L  K  F  Y  S  *  *  L  S  M  T  I  E  H  L  Q  F  I  L  Y  L  T  L  C  N  N  F  R  I  N  N  K  *  L  I  I  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6750" stop="6292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISILVQYFFLKIMGFGRSFVKGIHFGEKNKSRKTKIVESSNITTTTTYVCRDELDKKKPKIKKRVRFDLEPEEEENEKNSTFEKNTIIQEEKTKVQEGANISNDDGVIKVKILMKKEDAARLLIKYRNGGELEFMDIAQQLVQVPSSSVKVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19202" PGL_stop="18204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19202" e_stop="18204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="19202" e_stop="18204" e_length="999"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19202" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</gDNA_template>
            <first_frame> K  N  R  L  V  V  R  I  *  K  D  K  L  Q  F  P  I  S  T  S  H  L  I  L  Y  H  H  L  S  Q  I  Q  S  S  *  K  K  I  K  T  M  A  S  A  S  S  F  Q  L  S  S  L  Q  I  Q  T  P  P  L  K  K  S  N  F  L  G  Q  S  V  N  L  N  L  S  S  S  V  H  T  K  S  A  M  K  S  S  S  N  S  V  T  P  I  A  K  F  N  L  Y  E  I  L  G  G  R  G  L  C  N  G  E  E  G  I  E  K  E  L  K  K  S  I  S  E  E  Q  K  A  V  G  S  A  A  A  A  A  S  D  D  D  N  Q  E  N  K  E  T  G  E  I  P  E  D  G  F  E  K  E  M  M  G  F  T  G  G  F  P  G  G  E  K  G  L  M  K  F  I  E  K  N  P  P  P  P  P  P  K  K  T  E  S  S  M  V  S  G  F  N  Q  S  L  V  K  K  P  K  P  P  E  L  P  L  L  L  P  G  M  I  A  I  V  K  N  S  N  N  P  Y  Y  M  Y  C  G  I  V  Q  R  I  T  D  G  K  A  A  V  L  F  E  G  G  N  W  D  R  L  I  S  F  R  L  E  E  L  E  R  R  E  K  G  P  P  M  V  N  L  K  S  V  I  L  E  K  M  V  E  K  S  S  E  A  *  I  A  S  V  F  E  *  I  V  C  S  F  V  F  W  V  V  V  H  T  S  C  K  F  C  N  G  N  G  M  *  *  E  M  Q  K  N  F  C  A  G  R </first_frame>
            <second_frame>  K  T  D  W  W  S  E  F  E  R  T  N  Y  S  F  P  F  L  L  L  I  S  S  S  T  I  I  F  P  K  S  K  V  L  E  K  K  S  K  P  W  L  L  L  L  P  F  N  S  Q  A  F  K  F  K  P  H  L  L  K  N  Q  T  F  L  V  N  L  S  I  S  T  S  V  V  V  F  I  P  N  Q  L  *  N  H  L  Q  T  Q  L  H  Q  *  Q  N  S  I  F  M  R  F  L  E  V  E  V  C  V  M  E  K  R  V  *  R  K  S  *  K  S  R  F  P  K  N  K  R  Q  *  D  Q  Q  Q  Q  Q  L  V  M  M  I  I  K  K  T  R  R  L  G  R  Y  R  R  T  D  L  R  K  K  *  W  G  L  L  A  D  F  R  E  V  R  R  V  *  *  N  L  *  R  K  I  H  H  H  H  H  P  R  K  Q  N  Q  V  W  F  L  V  L  I  K  V  L  *  R  N  Q  S  H  L  N  C  H  F  C  Y  L  G  *  L  L  L  S  R  I  L  I  I  H  I  I  C  I  V  G  L  C  R  G  L  L  M  V  R  L  L  C  F  L  K  V  G  T  G  I  G  *  Y  L  S  G  S  K  N  S  N  V  E  R  K  D  R  Q  W  *  I  L  S  L  *  Y  L  R  R  W  *  K  R  A  L  K  L  E  L  L  Q  F  L  S  R  L  F  V  L  L  S  F  G  L  L  Y  I  Q  A  V  S  F  V  M  A  M  A  C  N  K  K  C  R  K  T  F  V  Q  E   </second_frame>
            <third_frame>   K  Q  I  G  G  Q  N  L  K  G  Q  I  T  V  S  H  F  Y  F  S  S  H  P  L  P  S  S  F  P  N  P  K  F  L  K  K  N  Q  N  H  G  F  C  F  F  L  S  T  L  K  P  S  N  S  N  P  T  S  *  K  I  K  L  S  W  S  I  C  Q  S  Q  P  Q  *  *  C  S  Y  Q  I  S  Y  E  I  I  F  K  L  S  Y  T  N  S  K  I  Q  S  L  *  D  S  W  R  *  R  S  V  *  W  R  R  G  Y  R  E  R  A  K  K  V  D  F  R  R  T  K  G  S  R  I  S  S  S  S  S  *  *  *  *  *  S  R  K  Q  G  D  W  G  D  T  G  G  R  I  *  E  R  N  D  G  V  Y  W  R  I  S  G  R  *  E  G  S  N  E  I  Y  R  E  K  S  T  T  T  T  T  Q  E  N  R  I  K  Y  G  F  W  F  *  S  K  S  C  E  E  T  K  A  T  *  I  A  T  F  V  T  W  D  D  C  Y  C  Q  E  F  *  *  S  I  L  Y  V  L  W  D  C  A  E  D  Y  *  W  *  G  C  C  A  F  *  R  W  E  L  G  *  V  D  I  F  Q  A  R  R  T  R  T  *  R  E  R  T  A  N  G  E  S  *  V  C  D  T  *  E  D  G  R  K  E  L  *  S  L  N  C  F  S  F  *  V  D  C  L  F  F  C  L  L  G  C  C  T  Y  K  L  *  V  L  *  W  Q  W  H  V  I  R  N  A  E  K  L  L  C  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19097" stop="18330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKTMASASSFQLSSLQIQTPPLKKSNFLGQSVNLNLSSSVHTKSAMKSSSNSVTPIAKFNLYEILGGRGLCNGEEGIEKELKKSISEEQKAVGSAAAAASDDDNQENKETGEIPEDGFEKEMMGFTGGFPGGEKGLMKFIEKNPPPPPPKKTESSMVSGFNQSLVKKPKPPELPLLLPGMIAIVKNSNNPYYMYCGIVQRITDGKAAVLFEGGNWDRLISFRLEELERREKGPPMVNLKSVILEKMVEKSSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28099" PGL_stop="30523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28099" e_stop="28989"/>
            <exon e_start="29071" e_stop="29154"/>
            <exon e_start="29653" e_stop="30523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="28099" e_stop="28989" e_length="891"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29071" e_stop="29154" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29653" e_stop="30523" e_length="871"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28099" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG : GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG : AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</gDNA_template>
            <first_frame> S  G  V  D  S  P  S  M  F  G  S  L  D  D  D  S  R  G  K  S  T  N  R  H  R  R  I  N  D  P  T  I  G  R  M  Q  G  N  A  W  K  G  V  P  N  W  P  S  P  L  A  N  G  F  M  P  F  Q  H  G  P  P  P  V  G  F  H  P  A  M  Q  Q  F  P  G  P  P  M  F  G  V  R  P  S  M  D  L  S  H  P  G  V  P  Y  H  M  P  D  A  D  R  F  S  G  H  G  R  P  M  G  W  R  T  P  L  D  D  S  C  G  P  P  L  H  G  W  D  A  N  N  F  G  E  E  A  H  L  Y  G  R  P  D  W  D  Q  N  R  T  L  S  N  N  S  R  S  W  E  T  I  G  D  V  W  K  G  P  I  R  G  T  S  V  E  V  P  S  G  S  Q  K  E  V  C  S  I  Q  G  P  D  N  S  F  A  S  Q  L  A  Q  Q  A  L  G  E  Q  K  Q  T  D  Q  D  A  E  S  N  N  I  S  F  Q  S  S  S  V  P  G  R  N  T  L  E  D  L  K  I  N  H  E  E  Q  P  I  D  V  K  S  S  G  K  G  E  A  S  L  N  N  V  Y  L  K  K  L  D  I  S  A  D  L  T  E  P  E  L  F  D  R  C  T  S  L  M  D  V  E  Q  I  L  T  S  D  N  S  K  I  L  F  L  E  :  G  A  V  E  S  N  V  V  L  P  S  K  F  S  T  V  P  L  I  A  T  V  A  D  S  V  F  Q  :  K  A  I  S  L  Y  K  R  R  E  K  I  E  F  T  N  G  G  H  F  T  F  S  G  Q  L  G  V  S  S  P  A  P  K  L  E  N  S  S  S  V  H  G  K  L  E  C  S  G  L  V  D  D  A  L  V  E  E  G  D  E  G  T  D  L  L  V  S  S  I  S  S  E  E  V  V  L  S  Q  T  T  L  Q  E  L  C  E  P  M  G  L  N  P  G  E  K  S  D  L  P  S  S  L  D  E  G  A  V  P  T  E  K  S  D  F  P  T  T  M  D  E  G  A  V  P  I  E  K  P  D  L  P  T  S  M  D  E  G  A  V  L  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  P  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  M  E  A  D  T  V  V  D  V  A  Q  E  I  K  V  L  E  T  A  E  E  V  G  Q  T  D  A  L  A  S  L  V  S  K  D  L  M  G  A  D  D  V  D  A  K  C  D  A  L  P  H  T  D  V  S  T  E  V  F  E  A  V  V  P  E  S  I  E  S  N  L  S  R  I  Q  H  S  S  E  S  T  H  *  D  N  L  F  F  R  V  F  E  M  P  L  L  Y  S  R  L  L  F  C  L  L  A  A  L  *  L  I  N  K  T  Q  S  F  L  </first_frame>
            <second_frame>  L  G  L  T  A  H  Q  C  L  A  L  W  T  T  T  V  E  G  S  L  P  I  V  T  E  E  S  M  I  R  L  *  E  E  C  K  E  M  L  G  R  G  F  Q  I  G  R  H  L  W  Q  M  V  S  C  L  S  S  M  V  H  L  L  L  V  S  I  P  Q  C  S  S  F  L  D  H  Q  C  S  V  L  G  L  Q  W  T  *  V  T  L  G  F  L  T  I  C  Q  M  Q  T  A  F  L  A  M  G  A  Q  W  V  G  E  L  H  *  M  I  H  V  G  P  H  C  M  D  G  M  L  T  I  L  V  K  K  L  T  F  M  E  G  Q  T  G  T  R  I  G  H  C  P  T  I  V  G  V  G  R  Q  L  V  M  Y  G  K  G  Q  *  G  A  P  V  W  R  C  H  P  V  H  R  R  R  S  V  Q  F  R  A  L  I  I  L  L  L  L  S  W  L  S  K  L  W  V  N  K  S  R  Q  I  K  M  L  K  A  I  I  S  V  F  S  P  A  V  S  P  E  G  T  L  *  K  I  *  K  L  I  M  K  S  N  Q  L  M  *  S  H  Q  G  K  E  R  L  V  L  T  M  F  T  S  K  S  L  I  S  Q  Q  I  *  Q  S  P  S  C  L  I  D  V  L  V  *  W  M  L  S  R  S  *  H  L  I  T  Q  R  S  Y  S  W  R :   V  L  *  N  L  M  *  C  C  P  A  N  F  Q  L  F  H  S  L  L  L  W  L  I  L  F  F  R :   K  P  F  P  F  T  R  G  G  R  K  L  N  S  Q  M  V  D  I  L  L  S  L  V  S  *  V  C  P  L  L  H  L  N  *  R  I  Q  V  Q  F  M  V  N  L  N  A  P  V  W  W  M  M  R  *  *  K  R  V  M  R  G  L  I  S  L  L  V  L  L  V  L  R  R  L  Y  F  H  K  P  H  F  R  S  C  V  S  Q  W  V  *  T  Q  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  R  L  R  N  Q  I  F  L  L  P  W  M  K  E  L  S  Q  L  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  *  V  R  N  Q  I  S  L  L  A  W  M  K  E  L  G  R  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  A  W  K  L  I  Q  L  W  M  W  P  R  K  L  K  F  *  K  L  R  K  R  W  A  K  L  M  P  L  L  L  W  C  L  K  I  *  W  G  L  M  M  L  M  L  N  V  M  L  F  H  T  L  M  C  L  L  R  Y  L  R  Q  W  C  Q  S  Q  L  S  L  I  *  V  G  Y  S  I  L  L  K  V  H  I  K  T  I  Y  F  S  E  F  L  K  C  P  F  Y  I  P  V  F  C  F  V  C  L  L  L  F  S  *  S  I  K  L  R  V  F  F </second_frame>
            <third_frame>   W  G  *  Q  P  I  N  V  W  L  F  G  R  R  Q  *  R  E  V  Y  Q  S  S  Q  K  N  Q  *  S  D  Y  R  K  N  A  R  K  C  L  E  G  G  S  K  L  A  V  T  S  G  K  W  F  H  A  F  P  A  W  S  T  S  C  W  F  P  S  R  N  A  A  V  S  W  T  T  N  V  R  C  *  A  F  N  G  L  E  S  P  W  G  S  L  P  Y  A  R  C  R  P  L  F  W  P  W  A  P  N  G  L  A  N  S  T  R  *  F  M  W  A  P  I  A  W  M  G  C  *  Q  F  W  *  R  S  S  P  L  W  K  A  R  L  G  P  E  *  D  I  V  Q  Q  *  S  E  L  G  D  N  W  *  C  M  E  R  A  N  K  G  H  Q  C  G  G  A  I  R  F  T  E  G  G  L  F  N  S  G  P  *  *  F  F  C  F  S  V  G  S  A  S  S  G  *  T  K  A  D  R  S  R  C  *  K  Q  *  Y  Q  F  S  V  Q  Q  C  P  R  K  E  H  S  R  R  F  E  N  *  S  *  R  A  T  N  *  C  E  V  I  R  E  R  R  G  *  S  *  Q  C  L  P  Q  K  A  *  Y  L  S  R  S  D  R  A  R  V  V  *  S  M  Y  *  F  N  G  C  *  A  D  L  D  I  *  *  L  K  D  L  I  L  G   : G  C  C  R  I  *  C  S  A  A  Q  Q  I  F  N  C  S  T  H  C  Y  C  G  *  F  C  F  S   : E  S  H  F  P  L  Q  E  E  G  E  N  *  I  H  K  W  W  T  F  Y  F  L  W  S  A  R  C  V  L  S  C  T  *  I  R  E  F  K  F  S  S  W  *  T  *  M  L  R  S  G  G  *  C  A  S  R  R  G  *  *  G  D  *  S  P  C  *  F  Y  *  F  *  G  G  C  T  F  T  N  H  T  S  G  A  V  *  A  N  G  F  E  P  R  R  E  I  R  S  P  F  *  L  G  *  R  S  C  S  D  *  E  I  R  F  S  Y  Y  H  G  *  R  S  C  P  N  *  E  T  R  S  P  Y  *  H  G  *  R  S  C  S  E  *  E  I  R  S  P  Y  *  H  G  *  R  S  W  A  E  R  E  I  R  S  P  Y  *  H  G  *  R  S  W  H  G  S  *  Y  S  C  G  C  G  P  G  N  *  S  F  R  N  C  G  R  G  G  P  N  *  C  P  C  F  S  G  V  *  R  F  D  G  G  *  *  C  *  C  *  M  *  C  S  S  T  H  *  C  V  Y  *  G  I  *  G  S  G  A  R  V  N  *  V  *  F  E  S  D  T  A  F  F  *  K  Y  T  L  R  Q  F  I  F  P  S  F  *  N  A  P  F  I  F  P  S  S  V  L  S  A  C  C  S  L  A  N  Q  *  N  S  E  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28099" stop="28989"/>
                    <exon start="29071" stop="29154"/>
                    <exon start="29653" stop="30417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1737</number_coding_nucleotides>
                  <number_encoded_amino_acids>579</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVDSPSMFGSLDDDSRGKSTNRHRRINDPTIGRMQGNAWKGVPNWPSPLANGFMPFQHGPPPVGFHPAMQQFPGPPMFGVRPSMDLSHPGVPYHMPDADRFSGHGRPMGWRTPLDDSCGPPLHGWDANNFGEEAHLYGRPDWDQNRTLSNNSRSWETIGDVWKGPIRGTSVEVPSGSQKEVCSIQGPDNSFASQLAQQALGEQKQTDQDAESNNISFQSSSVPGRNTLEDLKINHEEQPIDVKSSGKGEASLNNVYLKKLDISADLTEPELFDRCTSLMDVEQILTSDNSKILFLEGAVESNVVLPSKFSTVPLIATVADSVFQKAISLYKRREKIEFTNGGHFTFSGQLGVSSPAPKLENSSSVHGKLECSGLVDDALVEEGDEGTDLLVSSISSEEVVLSQTTLQELCEPMGLNPGEKSDLPSSLDEGAVPTEKSDFPTTMDEGAVPIEKPDLPTSMDEGAVLSEKSDLPTSMDEGAGPSEKSDLPTSMDEGAGMEADTVVDVAQEIKVLETAEEVGQTDALASLVSKDLMGADDVDAKCDALPHTDVSTEVFEAVVPESIESNLSRIQHSSESTH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="34785" PGL_stop="38153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34785" e_stop="34821"/>
            <exon e_start="35761" e_stop="35824"/>
            <exon e_start="35918" e_stop="36038"/>
            <exon e_start="37205" e_stop="37359"/>
            <exon e_start="37862" e_stop="38153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34785" e_stop="34821" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.976">
            <gDNA_intron_boundary i_start="34822" i_stop="35760" i_length="939"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35761" e_stop="35824" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35825" i_stop="35917" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35918" e_stop="36038" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.691">
            <gDNA_intron_boundary i_start="36039" i_stop="37204" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37205" e_stop="37359" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.950">
            <gDNA_intron_boundary i_start="37360" i_stop="37861" i_length="502"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="37862" e_stop="38153" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34785" stop="34821"/>
              <exon start="35761" stop="35824"/>
              <exon start="35918" stop="36038"/>
              <exon start="37205" stop="37359"/>
              <exon start="37862" stop="38153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTTTGGAAGAAAGAGAAGCTCATTTAAAAGCTCA : ATTAGAACATATTGACGAAATACTGCAGTCTGCTCGCATGTCGGGTTATTTGTATCTGAGAACG : AGATGGGAGGCTTTACCAGGCGAACCTCTTCCAATCGATGATGACACTGAAGTTGATGACTGGCTTCCTAAATTTCTTGTTCTTCAGGGATCGGGTATTTTCTTGTATTCATCATCCATAG : ATCTGAGTCCTCAAGACTCAACTCTTCTATCTGATGTTGTTGAAGTTGGAGCCATGCCTTGTCTGACACGAGACAACGGTGATACTCGATATTGCTTTTTTATTTCAACTCGTCATGGGCTGAGATATGAATGCTCAAGTGCTTCCAAAATACAG : GTTGATTCCTGGTTGGCGTCATTACCGAATCATTCTGATCTGCAATCTAACTGCACCGCGCCTGATGAGTTGACCAATACTTGACATCTTTTTCTGTCAGTATTCGGTAGCAACAACCTGTAAATAGACCAGAAATTGAAGCAAAGACAGCATTATTATTCACTTTGGAAGTTTGATTGAACAACTTTTAGCATTTATCCATTATTCTGTACATAGCTTATTTAACTGTCATTGTCAAGTTACTACTACTTGTATAAATAAAATGTATTCACAGTTTCAAGTATTTCCACTA</gDNA_template>
            <first_frame> L  L  W  K  K  E  K  L  I  *  K  L   : N  *  N  I  L  T  K  Y  C  S  L  L  A  C  R  V  I  C  I  *  E  R :   D  G  R  L  Y  Q  A  N  L  F  Q  S  M  M  T  L  K  L  M  T  G  F  L  N  F  L  F  F  R  D  R  V  F  S  C  I  H  H  P  *  :  I  *  V  L  K  T  Q  L  F  Y  L  M  L  L  K  L  E  P  C  L  V  *  H  E  T  T  V  I  L  D  I  A  F  L  F  Q  L  V  M  G  *  D  M  N  A  Q  V  L  P  K  Y  R :   L  I  P  G  W  R  H  Y  R  I  I  L  I  C  N  L  T  A  P  R  L  M  S  *  P  I  L  D  I  F  F  C  Q  Y  S  V  A  T  T  C  K  *  T  R  N  *  S  K  D  S  I  I  I  H  F  G  S  L  I  E  Q  L  L  A  F  I  H  Y  S  V  H  S  L  F  N  C  H  C  Q  V  T  T  T  C  I  N  K  M  Y  S  Q  F  Q  V  F  P  L </first_frame>
            <second_frame>  C  F  G  R  K  R  S  S  F  K  S  S  :  I  R  T  Y  *  R  N  T  A  V  C  S  H  V  G  L  F  V  S  E  N   : E  M  G  G  F  T  R  R  T  S  S  N  R  *  *  H  *  S  *  *  L  A  S  *  I  S  C  S  S  G  I  G  Y  F  L  V  F  I  I  H  R :   S  E  S  S  R  L  N  S  S  I  *  C  C  *  S  W  S  H  A  L  S  D  T  R  Q  R  *  Y  S  I  L  L  F  Y  F  N  S  S  W  A  E  I  *  M  L  K  C  F  Q  N  T   : G  *  F  L  V  G  V  I  T  E  S  F  *  S  A  I  *  L  H  R  A  *  *  V  D  Q  Y  L  T  S  F  S  V  S  I  R  *  Q  Q  P  V  N  R  P  E  I  E  A  K  T  A  L  L  F  T  L  E  V  *  L  N  N  F  *  H  L  S  I  I  L  Y  I  A  Y  L  T  V  I  V  K  L  L  L  L  V  *  I  K  C  I  H  S  F  K  Y  F  H   </second_frame>
            <third_frame>   A  L  E  E  R  E  A  H  L  K  A  Q :   L  E  H  I  D  E  I  L  Q  S  A  R  M  S  G  Y  L  Y  L  R  T  :  R  W  E  A  L  P  G  E  P  L  P  I  D  D  D  T  E  V  D  D  W  L  P  K  F  L  V  L  Q  G  S  G  I  F  L  Y  S  S  S  I   : D  L  S  P  Q  D  S  T  L  L  S  D  V  V  E  V  G  A  M  P  C  L  T  R  D  N  G  D  T  R  Y  C  F  F  I  S  T  R  H  G  L  R  Y  E  C  S  S  A  S  K  I  Q  :  V  D  S  W  L  A  S  L  P  N  H  S  D  L  Q  S  N  C  T  A  P  D  E  L  T  N  T  *  H  L  F  L  S  V  F  G  S  N  N  L  *  I  D  Q  K  L  K  Q  R  Q  H  Y  Y  S  L  W  K  F  D  *  T  T  F  S  I  Y  P  L  F  C  T  *  L  I  *  L  S  L  S  S  Y  Y  Y  L  Y  K  *  N  V  F  T  V  S  S  I  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34787" stop="34821"/>
                    <exon start="35761" stop="35824"/>
                    <exon start="35918" stop="36038"/>
                    <exon start="37205" stop="37359"/>
                    <exon start="37862" stop="37945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEEREAHLKAQLEHIDEILQSARMSGYLYLRTRWEALPGEPLPIDDDTEVDDWLPKFLVLQGSGIFLYSSSIDLSPQDSTLLSDVVEVGAMPCLTRDNGDTRYCFFISTRHGLRYECSSASKIQVDSWLASLPNHSDLQSNCTAPDELTNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39507" PGL_stop="42474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39507" e_stop="39644"/>
            <exon e_start="40807" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41642" e_stop="41809"/>
            <exon e_start="41901" e_stop="42013"/>
            <exon e_start="42110" e_stop="42474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39507" e_stop="39644" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40807" e_stop="40941" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41642" e_stop="41809" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41810" i_stop="41900" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="42013" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42014" i_stop="42109" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.956">
            <gDNA_exon_boundary e_start="42110" e_stop="42474" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39507" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41809"/>
              <exon start="41901" stop="42013"/>
              <exon start="42110" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTGCAAAGAAGCACTATCATGACTTGAGTGAGCGACCATTCTTTAACGGCTTGTGCGACTTCCTTAGCTCTGGCCCTGTCTTAGCAATG : GTTTGGGAAGGTGAAGGTGTAATCAGATATGGAAGGAAGCTTATCGGAGCCACCGATCCACAGAAATCTGAACCTGGAACCATCAGAGGCGATTTAGCTGTTGTAGTAGGAAG : GAACATCATCCATGGCAGCGATGGCCCCGAGACCGCAAAGGATGAGATCAACCTATGGTTTAAACCAGAGGAGTTGGTTAATTACACCAGCAACTCTGAGAAGTGGCTATATGGTGATAACTAAGTGAATGTACTCTTGCATTAATCTAATTAATTGCCATTAAACAGGCATGAGGGGTAGCAAACTCATATATCAAAATAATGCCAATTTTTCCTATGGCGAGTAGCAATTTTACATTTAGTATACTATTTAAAATCACCACAATAATATGTATTTGAAACAATGAACTCCATTTATGTATTGAAACATTGAATTCATTATTCTTGTTCCAATACAATGATCTATAGCAACAATTGGTAGGGAT</gDNA_template>
            <first_frame> L  S  I  T  S  Q  F  F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L  Q  R  S  T  I  M  T  *  V  S  D  H  S  L  T  A  C  A  T  S  L  A  L  A  L  S  *  Q  W :   F  G  K  V  K  V  *  S  D  M  E  G  S  L  S  E  P  P  I  H  R  N  L  N  L  E  P  S  E  A  I  *  L  L  *  *  E   : G  T  S  S  M  A  A  M  A  P  R  P  Q  R  M  R  S  T  Y  G  L  N  Q  R  S  W  L  I  T  P  A  T  L  R  S  G  Y  M  V  I  T  K  *  M  Y  S  C  I  N  L  I  N  C  H  *  T  G  M  R  G  S  K  L  I  Y  Q  N  N  A  N  F  S  Y  G  E  *  Q  F  Y  I  *  Y  T  I  *  N  H  H  N  N  M  Y  L  K  Q  *  T  P  F  M  Y  *  N  I  E  F  I  I  L  V  P  I  Q  *  S  I  A  T  I  G  R  D </first_frame>
            <second_frame>  S  L  *  L  H  N  F  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I  C  K  E  A  L  S  *  L  E  *  A  T  I  L  *  R  L  V  R  L  P  *  L  W  P  C  L  S  N   : G  L  G  R  *  R  C  N  Q  I  W  K  E  A  Y  R  S  H  R  S  T  E  I  *  T  W  N  H  Q  R  R  F  S  C  C  S  R  K  :  E  H  H  P  W  Q  R  W  P  R  D  R  K  G  *  D  Q  P  M  V  *  T  R  G  V  G  *  L  H  Q  Q  L  *  E  V  A  I  W  *  *  L  S  E  C  T  L  A  L  I  *  L  I  A  I  K  Q  A  *  G  V  A  N  S  Y  I  K  I  M  P  I  F  P  M  A  S  S  N  F  T  F  S  I  L  F  K  I  T  T  I  I  C  I  *  N  N  E  L  H  L  C  I  E  T  L  N  S  L  F  L  F  Q  Y  N  D  L  *  Q  Q  L  V  G   </second_frame>
            <third_frame>   L  Y  N  F  T  I  F  L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  A  K  K  H  Y  H  D  L  S  E  R  P  F  F  N  G  L  C  D  F  L  S  S  G  P  V  L  A  M  :  V  W  E  G  E  G  V  I  R  Y  G  R  K  L  I  G  A  T  D  P  Q  K  S  E  P  G  T  I  R  G  D  L  A  V  V  V  G  R :   N  I  I  H  G  S  D  G  P  E  T  A  K  D  E  I  N  L  W  F  K  P  E  E  L  V  N  Y  T  S  N  S  E  K  W  L  Y  G  D  N  *  V  N  V  L  L  H  *  S  N  *  L  P  L  N  R  H  E  G  *  Q  T  H  I  S  K  *  C  Q  F  F  L  W  R  V  A  I  L  H  L  V  Y  Y  L  K  S  P  Q  *  Y  V  F  E  T  M  N  S  I  Y  V  L  K  H  *  I  H  Y  S  C  S  N  T  M  I  Y  S  N  N  W  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39509" stop="39644"/>
                    <exon start="40807" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41642" stop="41809"/>
                    <exon start="41901" stop="42013"/>
                    <exon start="42110" stop="42233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNFTIFLTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEFAKKHYHDLSERPFFNGLCDFLSSGPVLAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYTSNSEKWLYGDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49700" PGL_stop="50150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49700" e_stop="50150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="49700" e_stop="50150" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49700" stop="50150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCCTTTTGTTCTTCTCCATCTTCTTAGCCTCCCTCTTAAAAATTCTTGAAAATTCTTTCAGCCCAATTAAGTAAAAGGCAAAAAGGTGCAAATTTTCATTATTATTTTTTATATAACCGTGTTTTTTTTTTTTTTTTTATATCATATCATACACCTATAAAAGCTTGGACTTAGGAGTCTTTGTTTCAAACTTGACAATAACAAAAAAAAAATCAGATTTTTTTCTTGATTTTTGGAATTCTTTTTCACCAAAACTCAAATCTTGTTATATAAAATTAAGGGTTAGTTTCTTTTTTAATTGTTTTATAGTACAATATGTCGAAGAGTATACTTGTGACAGGGGGAGCAGGGTATATTGGGAGTCACACAGTGTTGCAATTGTTGCTTGGTGGTTATAAGACTGTGGTGATTGATAATTTGGATAATTCTTCTGAAATTGCTGTGAAAA</gDNA_template>
            <first_frame> C  P  F  C  S  S  P  S  S  *  P  P  S  *  K  F  L  K  I  L  S  A  Q  L  S  K  R  Q  K  G  A  N  F  H  Y  Y  F  L  Y  N  R  V  F  F  F  F  F  I  S  Y  H  T  P  I  K  A  W  T  *  E  S  L  F  Q  T  *  Q  *  Q  K  K  N  Q  I  F  F  L  I  F  G  I  L  F  H  Q  N  S  N  L  V  I  *  N  *  G  L  V  S  F  L  I  V  L  *  Y  N  M  S  K  S  I  L  V  T  G  G  A  G  Y  I  G  S  H  T  V  L  Q  L  L  L  G  G  Y  K  T  V  V  I  D  N  L  D  N  S  S  E  I  A  V  K  </first_frame>
            <second_frame>  V  P  F  V  L  L  H  L  L  S  L  P  L  K  N  S  *  K  F  F  Q  P  N  *  V  K  G  K  K  V  Q  I  F  I  I  I  F  Y  I  T  V  F  F  F  F  F  L  Y  H  I  I  H  L  *  K  L  G  L  R  S  L  C  F  K  L  D  N  N  K  K  K  I  R  F  F  S  *  F  L  E  F  F  F  T  K  T  Q  I  L  L  Y  K  I  K  G  *  F  L  F  *  L  F  Y  S  T  I  C  R  R  V  Y  L  *  Q  G  E  Q  G  I  L  G  V  T  Q  C  C  N  C  C  L  V  V  I  R  L  W  *  L  I  I  W  I  I  L  L  K  L  L  *  K </second_frame>
            <third_frame>   S  L  L  F  F  S  I  F  L  A  S  L  L  K  I  L  E  N  S  F  S  P  I  K  *  K  A  K  R  C  K  F  S  L  L  F  F  I  *  P  C  F  F  F  F  F  Y  I  I  S  Y  T  Y  K  S  L  D  L  G  V  F  V  S  N  L  T  I  T  K  K  K  S  D  F  F  L  D  F  W  N  S  F  S  P  K  L  K  S  C  Y  I  K  L  R  V  S  F  F  F  N  C  F  I  V  Q  Y  V  E  E  Y  T  C  D  R  G  S  R  V  Y  W  E  S  H  S  V  A  I  V  A  W  W  L  *  D  C  G  D  *  *  F  G  *  F  F  *  N  C  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49819" stop="50100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCFFFFFYIISYTYKSLDLGVFVSNLTITKKKSDFFLDFWNSFSPKLKSCYIKLRVSFFFNCFIVQYVEEYTCDRGSRVYWESHSVAIVAWWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51576" PGL_stop="61359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51576" e_stop="51603"/>
            <exon e_start="51859" e_stop="51994"/>
            <exon e_start="52076" e_stop="52177"/>
            <exon e_start="52284" e_stop="52511"/>
            <exon e_start="52715" e_stop="52793"/>
            <exon e_start="52907" e_stop="52989"/>
            <exon e_start="53395" e_stop="53486"/>
            <exon e_start="53610" e_stop="54074"/>
            <exon e_start="56668" e_stop="56689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.953" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="51576" e_stop="51603" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51604" i_stop="51858" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51859" e_stop="51994" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.783">
            <gDNA_intron_boundary i_start="51995" i_stop="52075" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52076" e_stop="52177" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.903">
            <gDNA_intron_boundary i_start="52178" i_stop="52283" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52284" e_stop="52511" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52512" i_stop="52714" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52715" e_stop="52793" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52794" i_stop="52906" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52907" e_stop="52989" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52990" i_stop="53394" i_length="405"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53395" e_stop="53486" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53487" i_stop="53609" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53610" e_stop="54074" e_length="465"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54075" i_stop="56667" i_length="2593"/>
          </intron>
          <exon e_serial="9" e_score="0.864">
            <gDNA_exon_boundary e_start="56668" e_stop="56689" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51576" stop="51603"/>
              <exon start="51859" stop="51994"/>
              <exon start="52076" stop="52177"/>
              <exon start="52284" stop="52511"/>
              <exon start="52715" stop="52793"/>
              <exon start="52907" stop="52989"/>
              <exon start="53395" stop="53486"/>
              <exon start="53610" stop="54074"/>
              <exon start="56668" stop="56689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGAGGAGATTTTCAGGTCTAACAA : ATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTCTGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAG : CTTGTGTTTTCATCGTCAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAG : CTCTTCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATCCAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGCTGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGG : GTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTGCTGCCTTGCAGAAGCTATCTGATCCTTCCATAG : GCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGGCCGCATTTGAGAAGGCTTCTGGAAAG : AAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTGAGAAAGCAGAACGCGAATTGAAGTGGAA : GGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCTATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTTGCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGTTTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATAGTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTGATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTA : AAAAAATAAAAAAAATAATAAA</gDNA_template>
            <first_frame> Q  L  R  R  F  S  G  L  T   : N  L  M  L  L  F  I  L  L  D  *  R  R  L  V  K  V  S  R  N  L  *  C  T  M  T  T  T  L  L  E  Q  L  P  S  W  K  S  W  Q  L  M  D  A  K  S :   L  C  F  H  R  Q  L  L  F  M  V  G  Q  K  W  F  L  V  L  R  S  S  P  *  V  L  Q  I  L  M  D  G  Q  S :   S  S  L  K  K  Y  A  V  M  Y  K  T  R  T  L  N  G  K  S  Y  C  C  G  T  S  I  L  L  V  L  I  Q  V  A  E  L  V  K  I  R  E  E  F  R  T  T  L  C  H  L  F  N  K  L  L  L  A  E  E  K  S  *  Q  F  M  E  L  I  M  E  R  R  M  V  Q  G :   S  V  I  T  F  M  L  *  I  *  Q  T  D  T  L  L  P  C  R  S  Y  L  I  L  P  *  :  A  V  K  C  T  T  W  E  L  E  K  E  L  Q  S  L  K  W  W  P  H  L  R  R  L  L  E  R :   K  F  Q  W  L  C  L  V  D  A  L  E  M  L  K  L  Y  M  L  L  L  R  K  Q  N  A  N  *  S  G   : R  R  N  M  A  S  K  R  C  V  G  I  S  G  T  G  L  R  R  I  P  M  A  M  K  E  L  Q  N  L  I  T  V  T  E  V  Y  F  N  C  I  I  S  S  Y  S  R  Y  V  P  V  A  A  S  C  S  K  G  R  F  N  V  *  L  *  G  Y  *  M  A  L  *  C  L  Y  C  L  T  Y  I  S  F  R  M  *  L  E  F  Q  *  V  S  S  *  I  I  K  G  K  I  *  E  S  *  *  I  I  F  K  H  I  V  V  F  H  L  F  F  H  S  F  F  V  C  I  I  K  *  L  S  A  F  E  S  R  F  S  T  S  S  L  I  S  T  S  L  R  L  R  R  N  R  L  V  T   : K  K  I  K  K  I  I   </first_frame>
            <second_frame>  N  *  G  D  F  Q  V  *  Q  :  I  *  C  C  Y  S  F  C  W  T  K  G  G  W  *  K  C  R  E  T  S  D  V  L  *  Q  Q  P  Y  W  N  N  Y  P  L  G  S  H  G  S  S  W  M  Q  K   : A  C  V  F  I  V  S  Y  C  L  W  L  A  K  S  G  S  L  Y  *  G  V  P  P  E  C  C  K  S  L  W  T  D  K   : A  L  H  *  R  N  M  P  *  C  T  K  R  G  L  *  M  E  N  H  I  A  A  V  L  Q  S  C  W  C  S  S  K  W  P  N  W  *  R  S  A  R  N  S  E  Q  P  Y  A  I  C  S  T  S  C  C  W  Q  K  K  R  A  D  S  L  W  N  *  L  W  N  E  G  W  Y  R   : G  P  *  L  H  S  C  Y  R  F  S  R  R  T  H  C  C  L  A  E  A  I  *  S  F  H  R :   L  *  S  V  Q  L  G  N  W  K  R  N  F  S  P  *  N  G  G  R  I  *  E  G  F  W  K   : E  N  S  N  G  Y  V  W  S  T  P  W  R  C  *  N  C  I  C  C  Y  *  E  S  R  T  R  I  E  V  E  :  G  E  I  W  H  R  R  D  V  *  G  S  V  E  L  G  *  E  E  S  L  W  L  *  R  N  S  R  I  *  *  L  S  L  K  S  T  S  T  A  *  Y  R  H  I  V  D  T  F  L  L  L  H  R  V  R  R  D  D  S  T  Y  S  C  R  A  I  R  W  H  Y  N  V  Y  I  V  *  L  I  *  V  S  E  C  N  W  S  F  N  E  L  V  V  R  L  *  K  G  K  S  K  K  V  D  E  *  Y  L  S  I  *  *  Y  F  I  C  S  F  I  P  F  L  F  V  *  *  N  N  Y  R  H  L  N  L  V  L  A  H  H  H  *  F  Q  L  V  *  D  *  D  V  I  D  *  *  L  :  K  K  *  K  K  *  *  </second_frame>
            <third_frame>   I  E  E  I  F  R  S  N  K :   F  D  A  V  I  H  F  A  G  L  K  A  V  G  E  S  V  E  K  P  L  M  Y  Y  D  N  N  L  I  G  T  I  T  L  L  E  V  M  A  A  H  G  C  K  K  :  L  V  F  S  S  S  A  T  V  Y  G  W  P  K  V  V  P  C  T  E  E  F  P  L  S  A  A  N  P  Y  G  R  T  K  :  L  F  I  E  E  I  C  R  D  V  Q  N  A  D  S  E  W  K  I  I  L  L  R  Y  F  N  P  V  G  A  H  P  S  G  R  I  G  E  D  P  R  G  I  P  N  N  L  M  P  F  V  Q  Q  V  A  V  G  R  R  K  E  L  T  V  Y  G  T  D  Y  G  T  K  D  G  T  G  :  V  R  D  Y  I  H  V  I  D  L  A  D  G  H  I  A  A  L  Q  K  L  S  D  P  S  I   : G  C  E  V  Y  N  L  G  T  G  K  G  T  S  V  L  E  M  V  A  A  F  E  K  A  S  G  K  :  K  I  P  M  V  M  S  G  R  R  P  G  D  A  E  I  V  Y  A  A  T  E  K  A  E  R  E  L  K  W  K :   A  K  Y  G  I  E  E  M  C  R  D  Q  W  N  W  A  K  K  N  P  Y  G  Y  E  G  T  P  E  S  N  N  C  H  *  S  L  L  Q  L  H  N  I  V  I  *  S  I  R  S  C  C  C  I  V  F  E  G  T  I  Q  R  I  V  V  G  L  L  D  G  I  I  M  F  I  L  S  N  L  Y  K  F  Q  N  V  I  G  V  S  M  S  *  *  L  D  Y  K  R  E  N  L  R  K  L  M  N  N  I  *  A  Y  S  S  I  S  F  V  L  S  F  L  F  C  L  Y  N  K  I  T  I  G  I  *  I  S  F  *  H  I  I  I  D  F  N  *  F  E  I  E  T  *  S  I  S  N  * :   K  N  K  K  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51578" stop="51603"/>
                    <exon start="51859" stop="51994"/>
                    <exon start="52076" stop="52177"/>
                    <exon start="52284" stop="52511"/>
                    <exon start="52715" stop="52793"/>
                    <exon start="52907" stop="52989"/>
                    <exon start="53395" stop="53486"/>
                    <exon start="53610" stop="53712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEEIFRSNKFDAVIHFAGLKAVGESVEKPLMYYDNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKVVPCTEEFPLSAANPYGRTKLFIEEICRDVQNADSEWKIILLRYFNPVGAHPSGRIGEDPRGIPNNLMPFVQQVAVGRRKELTVYGTDYGTKDGTGVRDYIHVIDLADGHIAALQKLSDPSIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPMVMSGRRPGDAEIVYAATEKAERELKWKAKYGIEEMCRDQWNWAKKNPYGYEGTPESNNCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56633" e_stop="56874"/>
            <exon e_start="58643" e_stop="58725"/>
            <exon e_start="60060" e_stop="61359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56633" e_stop="56874" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56875" i_stop="58642" i_length="1768"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58643" e_stop="58725" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58726" i_stop="60059" i_length="1334"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="60060" e_stop="61359" e_length="1300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56633" stop="56874"/>
              <exon start="58643" stop="58725"/>
              <exon start="60060" stop="61359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGAGAAAAGAATATTCCCACAAAAGAAAGAAGAAAAAATAAAAAAAATAATAAAGGGGAACTTCAATTTAGCATATTTGTAGAGACAAAAAACCATCAATTGTTGTAAAAAATCGAAAACAACAGTTGAGACAACATCGTCCCACCTCCTTCTCCAGGCCCAGCTGAACTTTTTGGAAGGTGGGTTCTTGAAAATCTTAGAAAATGGCTACCAGCAATGACATTGTTGCAGCTACAAAG : GGTCAAGAAGAACTAAGTGTATTAATCTCAGAGAGGGAAATTTTCGACCAATGTGGACCTGTGCACCTAACTGCTATTGACTG : GGAAAATGTTGCTCATCAACGATCTGTGGCTGCCAGTTTGGTTCAGGGCGTCTACATCCTAGAGCGTGACAAGCAAGAAAAACGGAAGGGAAGTCAAGCTCTTGCTCCTCCATGGTGGAGACATTTCCAATTTGAGTTATATCGTGTGCTCATTGATGATGTTGATTCCTGCATTTTTGGTGCTATATATAAATTTGCACCCTCAAAATCTTATTTTGGCGGTTCCAAAGATAAAAGCCAACGATTTGTCATTGCTTTCCGTGGGACCTTAACCAAAGGTGATGCATTTTCTCGAGATATACAATTGGATATCCACATACTCAGGAATGGACTTCATCAGACTTCTCGCTTTGAGACAGCCATTCAAGCTGTTCGACATGTGGTTGCAACATTTGGAAGTTCAAGTATCTGGCTAACTGGTCATTCCTTAGGGGCTGCAATGGCAATGCTTGCTGGCAAAACCATGGCAAAGACTGGTGTATTTTTAGATGCATTTTTGTTTAATCCGCCATTCTTGTCGGCCCCAATTGAAAGAATTAAAGATCAAAAAGTGAAACACGGGATCAGATTTGCGACCAGTGTTATAACAGCTGGACTTGCTTTTGCTGCCAAGCATAAAAACGTGAATAATCAATCTGGAGATACATTTGTTGCATTATCTGCATGGACACCATGCCTATATGTGAATCCATCGGATCCTATTTGCGCAGAATACATTGGCTATTTTGAACACCGGGAAAAGATGGATACAATGGGAGCAGGAGTTATCGAGAAGCTAGCAACCCAACACTCACTTGGTGGTCTTGTCTTGAATTTCATGGGGAAGGAGTGTGATGAGCCATTGCACCTAATTCCATCAGCCAATTTAACAGTAAATTTGACTCCTCCGTCAGACTTCAAAGGAGCTCATGGTATTCACCAATGGTGGAAACCTGATTTACTTGTCGAGTCCAAGAAACACCAGTTTACATGAATGATGATATAAAACAAAGACCACTACACCGATAGATGGTATGTTTGTCGATTTTGTATCCCTGGTCGGGTATATTTATAGTTATCAACACATTACATTGTGCTCTTAGCTTAATAGTTGTGCCTTCTACTAGTGCTAAAGTTTCTTTACAGATGCATTGTCATCTCTTGTTACCTTCGACTCCAGTTTTATTCGTTCATGTTTCTATGTTTTGGTGAATCTATCCATCAGTTCTGTGCCTCATCCTATTACCTATTGTTGAGTGTTACGAATTGAAATTGTGCATATACTACTCATTGTATTATTGATAATATTTTTGTTATAGAA</gDNA_template>
            <first_frame> G  R  E  K  N  I  P  T  K  E  R  R  K  N  K  K  N  N  K  G  E  L  Q  F  S  I  F  V  E  T  K  N  H  Q  L  L  *  K  I  E  N  N  S  *  D  N  I  V  P  P  P  S  P  G  P  A  E  L  F  G  R  W  V  L  E  N  L  R  K  W  L  P  A  M  T  L  L  Q  L  Q  R :   V  K  K  N  *  V  Y  *  S  Q  R  G  K  F  S  T  N  V  D  L  C  T  *  L  L  L  T   : G  K  M  L  L  I  N  D  L  W  L  P  V  W  F  R  A  S  T  S  *  S  V  T  S  K  K  N  G  R  E  V  K  L  L  L  L  H  G  G  D  I  S  N  L  S  Y  I  V  C  S  L  M  M  L  I  P  A  F  L  V  L  Y  I  N  L  H  P  Q  N  L  I  L  A  V  P  K  I  K  A  N  D  L  S  L  L  S  V  G  P  *  P  K  V  M  H  F  L  E  I  Y  N  W  I  S  T  Y  S  G  M  D  F  I  R  L  L  A  L  R  Q  P  F  K  L  F  D  M  W  L  Q  H  L  E  V  Q  V  S  G  *  L  V  I  P  *  G  L  Q  W  Q  C  L  L  A  K  P  W  Q  R  L  V  Y  F  *  M  H  F  C  L  I  R  H  S  C  R  P  Q  L  K  E  L  K  I  K  K  *  N  T  G  S  D  L  R  P  V  L  *  Q  L  D  L  L  L  L  P  S  I  K  T  *  I  I  N  L  E  I  H  L  L  H  Y  L  H  G  H  H  A  Y  M  *  I  H  R  I  L  F  A  Q  N  T  L  A  I  L  N  T  G  K  R  W  I  Q  W  E  Q  E  L  S  R  S  *  Q  P  N  T  H  L  V  V  L  S  *  I  S  W  G  R  S  V  M  S  H  C  T  *  F  H  Q  P  I  *  Q  *  I  *  L  L  R  Q  T  S  K  E  L  M  V  F  T  N  G  G  N  L  I  Y  L  S  S  P  R  N  T  S  L  H  E  *  *  Y  K  T  K  T  T  T  P  I  D  G  M  F  V  D  F  V  S  L  V  G  Y  I  Y  S  Y  Q  H  I  T  L  C  S  *  L  N  S  C  A  F  Y  *  C  *  S  F  F  T  D  A  L  S  S  L  V  T  F  D  S  S  F  I  R  S  C  F  Y  V  L  V  N  L  S  I  S  S  V  P  H  P  I  T  Y  C  *  V  L  R  I  E  I  V  H  I  L  L  I  V  L  L  I  I  F  L  L  *   </first_frame>
            <second_frame>  E  E  K  R  I  F  P  Q  K  K  E  E  K  I  K  K  I  I  K  G  N  F  N  L  A  Y  L  *  R  Q  K  T  I  N  C  C  K  K  S  K  T  T  V  E  T  T  S  S  H  L  L  L  Q  A  Q  L  N  F  L  E  G  G  F  L  K  I  L  E  N  G  Y  Q  Q  *  H  C  C  S  Y  K   : G  S  R  R  T  K  C  I  N  L  R  E  G  N  F  R  P  M  W  T  C  A  P  N  C  Y  *  L  :  G  K  C  C  S  S  T  I  C  G  C  Q  F  G  S  G  R  L  H  P  R  A  *  Q  A  R  K  T  E  G  K  S  S  S  C  S  S  M  V  E  T  F  P  I  *  V  I  S  C  A  H  *  *  C  *  F  L  H  F  W  C  Y  I  *  I  C  T  L  K  I  L  F  W  R  F  Q  R  *  K  P  T  I  C  H  C  F  P  W  D  L  N  Q  R  *  C  I  F  S  R  Y  T  I  G  Y  P  H  T  Q  E  W  T  S  S  D  F  S  L  *  D  S  H  S  S  C  S  T  C  G  C  N  I  W  K  F  K  Y  L  A  N  W  S  F  L  R  G  C  N  G  N  A  C  W  Q  N  H  G  K  D  W  C  I  F  R  C  I  F  V  *  S  A  I  L  V  G  P  N  *  K  N  *  R  S  K  S  E  T  R  D  Q  I  C  D  Q  C  Y  N  S  W  T  C  F  C  C  Q  A  *  K  R  E  *  S  I  W  R  Y  I  C  C  I  I  C  M  D  T  M  P  I  C  E  S  I  G  S  Y  L  R  R  I  H  W  L  F  *  T  P  G  K  D  G  Y  N  G  S  R  S  Y  R  E  A  S  N  P  T  L  T  W  W  S  C  L  E  F  H  G  E  G  V  *  *  A  I  A  P  N  S  I  S  Q  F  N  S  K  F  D  S  S  V  R  L  Q  R  S  S  W  Y  S  P  M  V  E  T  *  F  T  C  R  V  Q  E  T  P  V  Y  M  N  D  D  I  K  Q  R  P  L  H  R  *  M  V  C  L  S  I  L  Y  P  W  S  G  I  F  I  V  I  N  T  L  H  C  A  L  S  L  I  V  V  P  S  T  S  A  K  V  S  L  Q  M  H  C  H  L  L  L  P  S  T  P  V  L  F  V  H  V  S  M  F  W  *  I  Y  P  S  V  L  C  L  I  L  L  P  I  V  E  C  Y  E  L  K  L  C  I  Y  Y  S  L  Y  Y  *  *  Y  F  C  Y  R  </second_frame>
            <third_frame>   K  R  K  E  Y  S  H  K  R  K  K  K  K  *  K  K  *  *  R  G  T  S  I  *  H  I  C  R  D  K  K  P  S  I  V  V  K  N  R  K  Q  Q  L  R  Q  H  R  P  T  S  F  S  R  P  S  *  T  F  W  K  V  G  S  *  K  S  *  K  M  A  T  S  N  D  I  V  A  A  T  K  :  G  Q  E  E  L  S  V  L  I  S  E  R  E  I  F  D  Q  C  G  P  V  H  L  T  A  I  D  W :   E  N  V  A  H  Q  R  S  V  A  A  S  L  V  Q  G  V  Y  I  L  E  R  D  K  Q  E  K  R  K  G  S  Q  A  L  A  P  P  W  W  R  H  F  Q  F  E  L  Y  R  V  L  I  D  D  V  D  S  C  I  F  G  A  I  Y  K  F  A  P  S  K  S  Y  F  G  G  S  K  D  K  S  Q  R  F  V  I  A  F  R  G  T  L  T  K  G  D  A  F  S  R  D  I  Q  L  D  I  H  I  L  R  N  G  L  H  Q  T  S  R  F  E  T  A  I  Q  A  V  R  H  V  V  A  T  F  G  S  S  S  I  W  L  T  G  H  S  L  G  A  A  M  A  M  L  A  G  K  T  M  A  K  T  G  V  F  L  D  A  F  L  F  N  P  P  F  L  S  A  P  I  E  R  I  K  D  Q  K  V  K  H  G  I  R  F  A  T  S  V  I  T  A  G  L  A  F  A  A  K  H  K  N  V  N  N  Q  S  G  D  T  F  V  A  L  S  A  W  T  P  C  L  Y  V  N  P  S  D  P  I  C  A  E  Y  I  G  Y  F  E  H  R  E  K  M  D  T  M  G  A  G  V  I  E  K  L  A  T  Q  H  S  L  G  G  L  V  L  N  F  M  G  K  E  C  D  E  P  L  H  L  I  P  S  A  N  L  T  V  N  L  T  P  P  S  D  F  K  G  A  H  G  I  H  Q  W  W  K  P  D  L  L  V  E  S  K  K  H  Q  F  T  *  M  M  I  *  N  K  D  H  Y  T  D  R  W  Y  V  C  R  F  C  I  P  G  R  V  Y  L  *  L  S  T  H  Y  I  V  L  L  A  *  *  L  C  L  L  L  V  L  K  F  L  Y  R  C  I  V  I  S  C  Y  L  R  L  Q  F  Y  S  F  M  F  L  C  F  G  E  S  I  H  Q  F  C  A  S  S  Y  Y  L  L  L  S  V  T  N  *  N  C  A  Y  T  T  H  C  I  I  D  N  I  F  V  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56836" stop="56874"/>
                    <exon start="58643" stop="58725"/>
                    <exon start="60060" stop="61032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMATSNDIVAATKGQEELSVLISEREIFDQCGPVHLTAIDWENVAHQRSVAASLVQGVYILERDKQEKRKGSQALAPPWWRHFQFELYRVLIDDVDSCIFGAIYKFAPSKSYFGGSKDKSQRFVIAFRGTLTKGDAFSRDIQLDIHILRNGLHQTSRFETAIQAVRHVVATFGSSSIWLTGHSLGAAMAMLAGKTMAKTGVFLDAFLFNPPFLSAPIERIKDQKVKHGIRFATSVITAGLAFAAKHKNVNNQSGDTFVALSAWTPCLYVNPSDPICAEYIGYFEHREKMDTMGAGVIEKLATQHSLGGLVLNFMGKECDEPLHLIPSANLTVNLTPPSDFKGAHGIHQWWKPDLLVESKKHQFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64610" PGL_stop="65973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64610" e_stop="64646"/>
            <exon e_start="65169" e_stop="65973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="0.459"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.459">
            <gDNA_exon_boundary e_start="64610" e_stop="64646" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64647" i_stop="65168" i_length="522"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65169" e_stop="65973" e_length="805"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64610" stop="64646"/>
              <exon start="65169" stop="65973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTCACATTCCTCTTAAAATCCTTCATTTTTATG : TAATAAGAAAAACATTTTTTTTACAATTACTCTGAAAATCACTACCAAACACAAAAATACACTAAACCAAAAAAATAATAATTAAAACTAAAAAAACTAATAATTTGCGAGCTATTACATTTGAGCGGATTTTTTTTTAGTTAAATAAAATAACTAACAGTGGAAAGCCGTAACAGATCCATCACTGACAGAAATATCAATTCTACATTCAGCTTTACTCTCCACATGATGTGTAAAAAAATGGAGCATTCTAACCCGACCCGCCATTTCCAATCTCGACTCCACTTCCATACTAGATCCGACCCGAAACCCACTCAGCCCATCCGTCACCGTCGGCCCACCCACACTCTCCGGTTGTCCATTCACCGTTAACGGAAACGCCTTCACCGAAAACGTCGCCGCCATATACTGAGTCCGACCCGAATTAATTTTTCCGGCGGGTACAAACATGAACCCGATTCGATTACCCGAATAAAGTAACTGCAGGGAACTGTCATAGTGAGCAAATTCATCGTGATTTGGGTTTTCGATTGAGACGTATTGAGAAAATGTGAAGTTCACGGTGCCGTTCGAGGCGGAGAAAGAGGGAAGCTGAATGGAGTTAACGGTGATAATGGGGGATTTAGGTTTGAAAAGAGTGAAGTAAAGGATGAAGATGATGATGAAGATGAAGATTAAGAAAATTGTTGCAACTATACATGAAGCTAAATTTGTACGTCCACTTGGAGGTTTACGAGATTTAACCATTTTTATTTTCTGTGAAGAAGAAATTCACAAAAATGTTTTGTTTAGAGAAAAAGACAAG</gDNA_template>
            <first_frame> F  F  H  I  P  L  K  I  L  H  F  Y   : V  I  R  K  T  F  F  L  Q  L  L  *  K  S  L  P  N  T  K  I  H  *  T  K  K  I  I  I  K  T  K  K  T  N  N  L  R  A  I  T  F  E  R  I  F  F  *  L  N  K  I  T  N  S  G  K  P  *  Q  I  H  H  *  Q  K  Y  Q  F  Y  I  Q  L  Y  S  P  H  D  V  *  K  N  G  A  F  *  P  D  P  P  F  P  I  S  T  P  L  P  Y  *  I  R  P  E  T  H  S  A  H  P  S  P  S  A  H  P  H  S  P  V  V  H  S  P  L  T  E  T  P  S  P  K  T  S  P  P  Y  T  E  S  D  P  N  *  F  F  R  R  V  Q  T  *  T  R  F  D  Y  P  N  K  V  T  A  G  N  C  H  S  E  Q  I  H  R  D  L  G  F  R  L  R  R  I  E  K  M  *  S  S  R  C  R  S  R  R  R  K  R  E  A  E  W  S  *  R  *  *  W  G  I  *  V  *  K  E  *  S  K  G  *  R  *  *  *  R  *  R  L  R  K  L  L  Q  L  Y  M  K  L  N  L  Y  V  H  L  E  V  Y  E  I  *  P  F  L  F  S  V  K  K  K  F  T  K  M  F  C  L  E  K  K  T   </first_frame>
            <second_frame>  S  F  T  F  L  L  K  S  F  I  F  M  :  *  *  E  K  H  F  F  Y  N  Y  S  E  N  H  Y  Q  T  Q  K  Y  T  K  P  K  K  *  *  L  K  L  K  K  L  I  I  C  E  L  L  H  L  S  G  F  F  F  S  *  I  K  *  L  T  V  E  S  R  N  R  S  I  T  D  R  N  I  N  S  T  F  S  F  T  L  H  M  M  C  K  K  M  E  H  S  N  P  T  R  H  F  Q  S  R  L  H  F  H  T  R  S  D  P  K  P  T  Q  P  I  R  H  R  R  P  T  H  T  L  R  L  S  I  H  R  *  R  K  R  L  H  R  K  R  R  R  H  I  L  S  P  T  R  I  N  F  S  G  G  Y  K  H  E  P  D  S  I  T  R  I  K  *  L  Q  G  T  V  I  V  S  K  F  I  V  I  W  V  F  D  *  D  V  L  R  K  C  E  V  H  G  A  V  R  G  G  E  R  G  K  L  N  G  V  N  G  D  N  G  G  F  R  F  E  K  S  E  V  K  D  E  D  D  D  E  D  E  D  *  E  N  C  C  N  Y  T  *  S  *  I  C  T  S  T  W  R  F  T  R  F  N  H  F  Y  F  L  *  R  R  N  S  Q  K  C  F  V  *  R  K  R  Q  </second_frame>
            <third_frame>   L  S  H  S  S  *  N  P  S  F  L  C :   N  K  K  N  I  F  F  T  I  T  L  K  I  T  T  K  H  K  N  T  L  N  Q  K  N  N  N  *  N  *  K  N  *  *  F  A  S  Y  Y  I  *  A  D  F  F  L  V  K  *  N  N  *  Q  W  K  A  V  T  D  P  S  L  T  E  I  S  I  L  H  S  A  L  L  S  T  *  C  V  K  K  W  S  I  L  T  R  P  A  I  S  N  L  D  S  T  S  I  L  D  P  T  R  N  P  L  S  P  S  V  T  V  G  P  P  T  L  S  G  C  P  F  T  V  N  G  N  A  F  T  E  N  V  A  A  I  Y  *  V  R  P  E  L  I  F  P  A  G  T  N  M  N  P  I  R  L  P  E  *  S  N  C  R  E  L  S  *  *  A  N  S  S  *  F  G  F  S  I  E  T  Y  *  E  N  V  K  F  T  V  P  F  E  A  E  K  E  G  S  *  M  E  L  T  V  I  M  G  D  L  G  L  K  R  V  K  *  R  M  K  M  M  M  K  M  K  I  K  K  I  V  A  T  I  H  E  A  K  F  V  R  P  L  G  G  L  R  D  L  T  I  F  I  F  C  E  E  E  I  H  K  N  V  L  F  R  E  K  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65322" stop="65540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVESRNRSITDRNINSTFSFTLHMMCKKMEHSNPTRHFQSRLHFHTRSDPKPTQPIRHRRPTHTLRLSIHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67524" PGL_stop="65912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67524" e_stop="67020"/>
            <exon e_start="65924" e_stop="65912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.970"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="67524" e_stop="67020" e_length="505"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67019" i_stop="65925" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="65924" e_stop="65912" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67524" stop="67020"/>
              <exon start="65924" stop="65912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGAGACAGGACTTACACCATTCGACATTGGAAATATGATGTGCAGGGAAACCTTGAACAAGGAATCTGTAATCGAGGAAATCATTCGTGATGCTGAAGATTCTATGCTTCCTGGCATGACTGAAGCTACATTTCTTGAAACTGTCTACAAGCTCATGGATATCAAGCTTGAGAAGCTAAAATATAAATCTTCCTAAGGATTGTAAGTATGTATCTTCAATTCTGTTGTATGTATATAGCGTTCGGTCCATATATATATATATAAATGGACTGAATGGAGATAGAAAAGGTTGATGACTGACCTTGTCCGTCTATGGTCGGAAACCTTTTTTTCCCTCTCAACTTCTGTTCATTACCAATAAGGTGGTTATTCAAATATGGAGCAGAAGTTGCAATATGCAATAAATAATAAATAAAACAAGCTGTTATTTGTAAAACAGTTGTCATGTATCCTTTCTCAATGAGTAAAGTGATACTGAATTTTATGTACAAAAGCTATCAAAT : AAAATAAAAATGG</gDNA_template>
            <first_frame> V  E  T  G  L  T  P  F  D  I  G  N  M  M  C  R  E  T  L  N  K  E  S  V  I  E  E  I  I  R  D  A  E  D  S  M  L  P  G  M  T  E  A  T  F  L  E  T  V  Y  K  L  M  D  I  K  L  E  K  L  K  Y  K  S  S  *  G  L  *  V  C  I  F  N  S  V  V  C  I  *  R  S  V  H  I  Y  I  Y  K  W  T  E  W  R  *  K  R  L  M  T  D  L  V  R  L  W  S  E  T  F  F  S  L  S  T  S  V  H  Y  Q  *  G  G  Y  S  N  M  E  Q  K  L  Q  Y  A  I  N  N  K  *  N  K  L  L  F  V  K  Q  L  S  C  I  L  S  Q  *  V  K  *  Y  *  I  L  C  T  K  A  I  K   : *  N  K  N   </first_frame>
            <second_frame>  *  R  Q  D  L  H  H  S  T  L  E  I  *  C  A  G  K  P  *  T  R  N  L  *  S  R  K  S  F  V  M  L  K  I  L  C  F  L  A  *  L  K  L  H  F  L  K  L  S  T  S  S  W  I  S  S  L  R  S  *  N  I  N  L  P  K  D  C  K  Y  V  S  S  I  L  L  Y  V  Y  S  V  R  S  I  Y  I  Y  I  N  G  L  N  G  D  R  K  G  *  *  L  T  L  S  V  Y  G  R  K  P  F  F  P  S  Q  L  L  F  I  T  N  K  V  V  I  Q  I  W  S  R  S  C  N  M  Q  *  I  I  N  K  T  S  C  Y  L  *  N  S  C  H  V  S  F  L  N  E  *  S  D  T  E  F  Y  V  Q  K  L  S  N  :  K  I  K  M  </second_frame>
            <third_frame>   R  D  R  T  Y  T  I  R  H  W  K  Y  D  V  Q  G  N  L  E  Q  G  I  C  N  R  G  N  H  S  *  C  *  R  F  Y  A  S  W  H  D  *  S  Y  I  S  *  N  C  L  Q  A  H  G  Y  Q  A  *  E  A  K  I  *  I  F  L  R  I  V  S  M  Y  L  Q  F  C  C  M  Y  I  A  F  G  P  Y  I  Y  I  *  M  D  *  M  E  I  E  K  V  D  D  *  P  C  P  S  M  V  G  N  L  F  F  P  L  N  F  C  S  L  P  I  R  W  L  F  K  Y  G  A  E  V  A  I  C  N  K  *  *  I  K  Q  A  V  I  C  K  T  V  V  M  Y  P  F  S  M  S  K  V  I  L  N  F  M  Y  K  S  Y  Q  I :   K  *  K  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67524" stop="67327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETGLTPFDIGNMMCRETLNKESVIEEIIRDAEDSMLPGMTEATFLETVYKLMDIKLEKLKYKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69156" PGL_stop="68251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69156" e_stop="68251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69156" e_stop="68251" e_length="906"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69156" stop="68251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGAGGAACTTAAGGTTCAAGAGCTATTCTGTAATGGTGAGAAGCTTGAGGATCAGAAGCTCATCGATGATATTACTGCTGATGCAGTGATTCACTTGGTAGTTCAGAAATTTGCAAAGCTTCGGGCTAAGCATGCCGAGAGGGATGTTGAACTTTCTGTTGTTGCAGCTAATTGGCATGAGGAGACCCAAAGTCAGGGTGAACATGAACCATCCAGGGAGTTACAGTCCTTCTCCAAGAAGACACCTGATACAAATTTGGTGTTGGAACCTTTTGTTGTTGATCCAAATGTTGAACTTCCAGGATATATCTGGGACATGATCAACTCTGCATGTGATGGATTGACGAAAGGCAATATACCTATCCGATCATCTGAAGGGACTGGAGGAACTTATTTCATGCAGGACGGGTCTGGCAACAAGTATGTTGCCATTTTTAAGCCTATTGATGAGGAACCGCTAGCTGTGAATAACCCTCAAGGGCTACCTTTATCTACCAACGGTGAAGGGTTGAAAAGGGGAACCCGAGTTGGAGAAGGTGCATTCAGGGAGGTTGCAGCTTTCCTTCTGGACCATCCAAGGACCGGGCAACGAACATTGTCCAATTGTGAGATAGGCTTTTCCGGTGTGCCTCCCACTGTTATGGTTCAGTGCTTGCACAATACATTTCATCATCCTGATGGATTTGAGTGGTCATCTGAATATACCAAAATTGGCTCACTGCAGCTGTTTATGAAGAATGAAGGAAATTGTGAGGATATGGGTCCAGGGATATTTCCTGTTGAGGAAGTCCATAAGATTACTGTCTTTGACATAAGAACAGCAAATGCTGATAGGCATGCTGGGAATATTCTTGTGAGCAGGGAAGGGAAAGAAGGACGAATCGTGCTTACACCAATTGACCAT</gDNA_template>
            <first_frame> G  E  E  L  K  V  Q  E  L  F  C  N  G  E  K  L  E  D  Q  K  L  I  D  D  I  T  A  D  A  V  I  H  L  V  V  Q  K  F  A  K  L  R  A  K  H  A  E  R  D  V  E  L  S  V  V  A  A  N  W  H  E  E  T  Q  S  Q  G  E  H  E  P  S  R  E  L  Q  S  F  S  K  K  T  P  D  T  N  L  V  L  E  P  F  V  V  D  P  N  V  E  L  P  G  Y  I  W  D  M  I  N  S  A  C  D  G  L  T  K  G  N  I  P  I  R  S  S  E  G  T  G  G  T  Y  F  M  Q  D  G  S  G  N  K  Y  V  A  I  F  K  P  I  D  E  E  P  L  A  V  N  N  P  Q  G  L  P  L  S  T  N  G  E  G  L  K  R  G  T  R  V  G  E  G  A  F  R  E  V  A  A  F  L  L  D  H  P  R  T  G  Q  R  T  L  S  N  C  E  I  G  F  S  G  V  P  P  T  V  M  V  Q  C  L  H  N  T  F  H  H  P  D  G  F  E  W  S  S  E  Y  T  K  I  G  S  L  Q  L  F  M  K  N  E  G  N  C  E  D  M  G  P  G  I  F  P  V  E  E  V  H  K  I  T  V  F  D  I  R  T  A  N  A  D  R  H  A  G  N  I  L  V  S  R  E  G  K  E  G  R  I  V  L  T  P  I  D  H </first_frame>
            <second_frame>  V  R  N  L  R  F  K  S  Y  S  V  M  V  R  S  L  R  I  R  S  S  S  M  I  L  L  L  M  Q  *  F  T  W  *  F  R  N  L  Q  S  F  G  L  S  M  P  R  G  M  L  N  F  L  L  L  Q  L  I  G  M  R  R  P  K  V  R  V  N  M  N  H  P  G  S  Y  S  P  S  P  R  R  H  L  I  Q  I  W  C  W  N  L  L  L  L  I  Q  M  L  N  F  Q  D  I  S  G  T  *  S  T  L  H  V  M  D  *  R  K  A  I  Y  L  S  D  H  L  K  G  L  E  E  L  I  S  C  R  T  G  L  A  T  S  M  L  P  F  L  S  L  L  M  R  N  R  *  L  *  I  T  L  K  G  Y  L  Y  L  P  T  V  K  G  *  K  G  E  P  E  L  E  K  V  H  S  G  R  L  Q  L  S  F  W  T  I  Q  G  P  G  N  E  H  C  P  I  V  R  *  A  F  P  V  C  L  P  L  L  W  F  S  A  C  T  I  H  F  I  I  L  M  D  L  S  G  H  L  N  I  P  K  L  A  H  C  S  C  L  *  R  M  K  E  I  V  R  I  W  V  Q  G  Y  F  L  L  R  K  S  I  R  L  L  S  L  T  *  E  Q  Q  M  L  I  G  M  L  G  I  F  L  *  A  G  K  G  K  K  D  E  S  C  L  H  Q  L  T   </second_frame>
            <third_frame>   *  G  T  *  G  S  R  A  I  L  *  W  *  E  A  *  G  S  E  A  H  R  *  Y  Y  C  *  C  S  D  S  L  G  S  S  E  I  C  K  A  S  G  *  A  C  R  E  G  C  *  T  F  C  C  C  S  *  L  A  *  G  D  P  K  S  G  *  T  *  T  I  Q  G  V  T  V  L  L  Q  E  D  T  *  Y  K  F  G  V  G  T  F  C  C  *  S  K  C  *  T  S  R  I  Y  L  G  H  D  Q  L  C  M  *  W  I  D  E  R  Q  Y  T  Y  P  I  I  *  R  D  W  R  N  L  F  H  A  G  R  V  W  Q  Q  V  C  C  H  F  *  A  Y  *  *  G  T  A  S  C  E  *  P  S  R  A  T  F  I  Y  Q  R  *  R  V  E  K  G  N  P  S  W  R  R  C  I  Q  G  G  C  S  F  P  S  G  P  S  K  D  R  A  T  N  I  V  Q  L  *  D  R  L  F  R  C  A  S  H  C  Y  G  S  V  L  A  Q  Y  I  S  S  S  *  W  I  *  V  V  I  *  I  Y  Q  N  W  L  T  A  A  V  Y  E  E  *  R  K  L  *  G  Y  G  S  R  D  I  S  C  *  G  S  P  *  D  Y  C  L  *  H  K  N  S  K  C  *  *  A  C  W  E  Y  S  C  E  Q  G  R  E  R  R  T  N  R  A  Y  T  N  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69156" stop="68251"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEELKVQELFCNGEKLEDQKLIDDITADAVIHLVVQKFAKLRAKHAERDVELSVVAANWHEETQSQGEHEPSRELQSFSKKTPDTNLVLEPFVVDPNVELPGYIWDMINSACDGLTKGNIPIRSSEGTGGTYFMQDGSGNKYVAIFKPIDEEPLAVNNPQGLPLSTNGEGLKRGTRVGEGAFREVAAFLLDHPRTGQRTLSNCEIGFSGVPPTVMVQCLHNTFHHPDGFEWSSEYTKIGSLQLFMKNEGNCEDMGPGIFPVEEVHKITVFDIRTANADRHAGNILVSREGKEGRIVLTPIDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="94051" PGL_stop="95085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94051" e_stop="95085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="94051" e_stop="95085" e_length="1035"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94051" stop="95085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTATTAAGGCCCAAAAAAATAGTTGAATTTCCCAAAGTTTTAATCTCATCTTCCTCTTTTAATTCGCCGCCCTTGACTACATCTACTTCAAAAACTTTAAATTTATATGTCTTATATCTATGAAGCTCCGGATGATGAGCAAATCGGGTAATAAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCTGCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCACTAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCAGAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAAGGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAGTTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAACTTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTATGGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGGAGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAAACTGCAATATATATTGGCGCAAGTTTTCCTATTTTTATTCGTATTTCTATATTAATAAGGATTTTGAACAAGCCCAAAAATATTTGTA</gDNA_template>
            <first_frame> L  Y  *  G  P  K  K  *  L  N  F  P  K  F  *  S  H  L  P  L  L  I  R  R  P  *  L  H  L  L  Q  K  L  *  I  Y  M  S  Y  I  Y  E  A  P  D  D  E  Q  I  G  *  *  I  I  V  Y  L  I  A  G  P  G  N  I  E  L  K  A  A  E  I  C  H  V  R  T  N  K  A  S  V  A  L  L  R  L  V  W  E  *  Q  A  L  E  N  P  K  F  T  T  S  C  N  I  I  E  F  T  L  I  I  I  D  T  H  D  S  T  R  I  L  H  L  N  I  C  S  T  E  I  S  R  K  P  S  E  *  Y  L  R  D  S  *  P  R  V  H  N  L  R  *  H  K  D  L  Q  I  R  *  H  A  L  E  G  S  R  T  L  H  L  R  D  H  *  K  P  L  S  Y  L  V  K  E  V  E  F  G  Y  E  T  N  D  A  T  S  S  S  L  R  *  Y  H  P  W  C  R  A  I  L  P  R  E  N  N  I  V  V  *  L  R  G  E  T  K  E  *  L  S  A  *  *  E  S  K  I  L  G  N  H  H  V  C  Q  P  T  *  V  K  E  F  W  *  K  R  Y  Q  I  Y  G  *  G  *  *  Q  F  A  K  R  Y  K  H  K  *  R  I  G  N  L  *  V  I  Q  Y  D  L  Q  S  *  Q  G  D  P  S  I  I  L  P  S  R  L  P  *  R  R  T  S  C  S  S  I  F  F  F  G  Y  K  L  Q  Y  I  L  A  Q  V  F  L  F  L  F  V  F  L  Y  *  *  G  F  *  T  S  P  K  I  F  V </first_frame>
            <second_frame>  C  I  K  A  Q  K  N  S  *  I  S  Q  S  F  N  L  I  F  L  F  *  F  A  A  L  D  Y  I  Y  F  K  N  F  K  F  I  C  L  I  S  M  K  L  R  M  M  S  K  S  G  N  K  *  *  F  I  *  *  L  D  Q  V  I  L  N  *  R  L  Q  K  Y  V  M  F  G  P  I  K  Q  V  W  L  Y  C  V  W  F  G  S  S  R  P  W  K  T  Q  N  S  P  L  A  V  T  *  *  N  L  P  L  *  *  L  I  P  M  T  A  P  E  F  S  I  S  I  F  V  Q  L  R  S  P  E  S  Q  A  S  N  I  C  V  I  V  N  H  E  Y  I  I  *  G  N  T  R  T  C  R  *  D  S  M  L  *  K  V  P  E  H  F  I  S  E  T  I  R  S  H  *  V  I  S  *  R  K  L  N  L  G  T  R  Q  M  M  Q  Q  V  H  L  S  G  S  I  I  H  G  A  E  P  S  F  R  G  K  T  I  S  L  S  S  F  G  E  K  Q  R  S  N  F  L  L  D  K  R  V  K  F  S  A  I  I  M  F  V  S  Q  H  K  *  R  S  F  G  K  K  D  I  K  F  M  V  R  G  S  S  N  L  P  R  G  T  N  T  S  K  E  *  E  I  F  R  *  F  N  T  I  C  N  H  S  K  E  I  H  R  *  F  C  P  A  A  C  H  E  E  E  R  V  V  V  L  F  F  F  L  V  T  N  C  N  I  Y  W  R  K  F  S  Y  F  Y  S  Y  F  Y  I  N  K  D  F  E  Q  A  Q  K  Y  L   </second_frame>
            <third_frame>   V  L  R  P  K  K  I  V  E  F  P  K  V  L  I  S  S  S  S  F  N  S  P  P  L  T  T  S  T  S  K  T  L  N  L  Y  V  L  Y  L  *  S  S  G  *  *  A  N  R  V  I  N  N  S  L  S  D  S  W  T  R  *  Y  *  T  E  G  C  R  N  M  S  C  S  D  Q  *  S  K  C  G  S  T  A  F  G  L  G  V  A  G  P  G  K  P  K  I  H  H  *  L  *  H  N  R  I  Y  P  Y  N  N  *  Y  P  *  Q  H  P  N  S  P  S  Q  Y  L  F  N  *  D  L  Q  K  A  K  R  V  I  F  A  *  *  L  T  T  S  T  *  S  E  V  T  Q  G  L  A  D  K  I  A  C  S  R  R  F  Q  N  T  S  S  P  R  P  L  E  A  I  K  L  S  R  E  G  S  *  I  W  V  R  D  K  *  C  N  K  F  I  S  P  V  V  S  S  M  V  Q  S  H  P  S  E  G  K  Q  Y  R  C  L  A  S  G  R  N  K  G  V  T  F  C  L  I  R  E  *  N  S  R  Q  S  S  C  L  S  A  N  I  S  K  G  V  L  V  K  K  I  S  N  L  W  L  G  V  V  A  I  C  Q  E  V  Q  T  Q  V  K  N  R  K  S  L  G  D  S  I  R  F  A  I  I  A  R  R  S  I  D  N  S  A  Q  P  P  A  M  K  K  N  E  L  *  F  Y  F  F  F  W  L  Q  T  A  I  Y  I  G  A  S  F  P  I  F  I  R  I  S  I  L  I  R  I  L  N  K  P  K  N  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94752" stop="94973"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRQSSCLSANISKGVLVKKISNLWLGVVAICQEVQTQVKNRKSLGDSIRFAIIARRSIDNSAQPPAMKKNEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94595" stop="94792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLNLGTRQMMQQVHLSGSIIHGAEPSFRGKTISLSSFGEKQRSNFLLDKRVKFSAIIMFVSQHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="96081" PGL_stop="97033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96081" e_stop="96901"/>
            <exon e_start="96975" e_stop="97033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96081" e_stop="96901" e_length="821"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96902" i_stop="96974" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="96975" e_stop="97033" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96081" stop="96901"/>
              <exon start="96975" stop="97033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAATTGCAGAGCTAAAAGGACTCCAATTGGTTCAGTAAAAATGCTTCTTCACAAATCCAAAATCTCAGTTCAATGAGTATCAGTTCAGTAAACATGTCTTTTTCAACAGGTAACAATTTTATATCAGCAAGGTCCATTCTTCATCCAAAGCCCAACATTCAGCTTCAAAGTTCATTCGTAATCAAATCCCCATTTCAGAAAAGTTATACAAATCCTATTTTTCATAGAAATTTCAGAAAAAGATCACATTTTTACCATTCCCCATATGCAATTCTTGGAAAATGGAGGTCTAATTCGAAGTCCTCTGAAGAAGGGGCAAGCAATAATGAAGATTTTGTGACTAGGGTTTTGAAAGAAAACCCAAGCCAAGTGGAACCCAAATATCTAATTGGGAATAAACTTTACACTCTAAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTATTGAATGGTGGTGTTTTGGAGATACTAAAAAGGTTAAATATTAAAGGAATGGTGAAGAATGGAAGTGATGAGGGTAGTTTAATGAAGTCTGGGGATGTGTTTTTGAAGGATATTTTGAGGGAGTATAAAGGGAAGTTATATGTTCCTGAGCAAATTTTTGGTGCTAATTTGTCTGAAGAAGAAGAATTTGAAAAAAATGTTGAAGATTTGCCTAAGATGAGCTTGAAGGATTTTCAGAAGTATATGAAATTTGATAAGATAAAGTTGTTGACTTTTAAAGAGGATACTGGAGCTTCTTTGGGATTGGGGTCTAGAGATTTTATTGTTGAGTTGAAGGAGATGCCCGGAGAGAAGAGCTTGCAGAGAACTAAATG : GGCAATGAAGCTGGATCAAAATCAAGCTCAGGCTTTACTAGAGGAGTACACTGGGCCAA</gDNA_template>
            <first_frame> N  K  L  Q  S  *  K  D  S  N  W  F  S  K  N  A  S  S  Q  I  Q  N  L  S  S  M  S  I  S  S  V  N  M  S  F  S  T  G  N  N  F  I  S  A  R  S  I  L  H  P  K  P  N  I  Q  L  Q  S  S  F  V  I  K  S  P  F  Q  K  S  Y  T  N  P  I  F  H  R  N  F  R  K  R  S  H  F  Y  H  S  P  Y  A  I  L  G  K  W  R  S  N  S  K  S  S  E  E  G  A  S  N  N  E  D  F  V  T  R  V  L  K  E  N  P  S  Q  V  E  P  K  Y  L  I  G  N  K  L  Y  T  L  K  E  K  E  D  L  G  K  K  G  L  L  N  G  G  V  L  E  I  L  K  R  L  N  I  K  G  M  V  K  N  G  S  D  E  G  S  L  M  K  S  G  D  V  F  L  K  D  I  L  R  E  Y  K  G  K  L  Y  V  P  E  Q  I  F  G  A  N  L  S  E  E  E  E  F  E  K  N  V  E  D  L  P  K  M  S  L  K  D  F  Q  K  Y  M  K  F  D  K  I  K  L  L  T  F  K  E  D  T  G  A  S  L  G  L  G  S  R  D  F  I  V  E  L  K  E  M  P  G  E  K  S  L  Q  R  T  K  W :   A  M  K  L  D  Q  N  Q  A  Q  A  L  L  E  E  Y  T  G  P  </first_frame>
            <second_frame>  T  N  C  R  A  K  R  T  P  I  G  S  V  K  M  L  L  H  K  S  K  I  S  V  Q  *  V  S  V  Q  *  T  C  L  F  Q  Q  V  T  I  L  Y  Q  Q  G  P  F  F  I  Q  S  P  T  F  S  F  K  V  H  S  *  S  N  P  H  F  R  K  V  I  Q  I  L  F  F  I  E  I  S  E  K  D  H  I  F  T  I  P  H  M  Q  F  L  E  N  G  G  L  I  R  S  P  L  K  K  G  Q  A  I  M  K  I  L  *  L  G  F  *  K  K  T  Q  A  K  W  N  P  N  I  *  L  G  I  N  F  T  L  *  R  K  K  R  I  W  V  R  R  V  Y  *  M  V  V  F  W  R  Y  *  K  G  *  I  L  K  E  W  *  R  M  E  V  M  R  V  V  *  *  S  L  G  M  C  F  *  R  I  F  *  G  S  I  K  G  S  Y  M  F  L  S  K  F  L  V  L  I  C  L  K  K  K  N  L  K  K  M  L  K  I  C  L  R  *  A  *  R  I  F  R  S  I  *  N  L  I  R  *  S  C  *  L  L  K  R  I  L  E  L  L  W  D  W  G  L  E  I  L  L  L  S  *  R  R  C  P  E  R  R  A  C  R  E  L  N   : G  Q  *  S  W  I  K  I  K  L  R  L  Y  *  R  S  T  L  G  Q </second_frame>
            <third_frame>   Q  I  A  E  L  K  G  L  Q  L  V  Q  *  K  C  F  F  T  N  P  K  S  Q  F  N  E  Y  Q  F  S  K  H  V  F  F  N  R  *  Q  F  Y  I  S  K  V  H  S  S  S  K  A  Q  H  S  A  S  K  F  I  R  N  Q  I  P  I  S  E  K  L  Y  K  S  Y  F  S  *  K  F  Q  K  K  I  T  F  L  P  F  P  I  C  N  S  W  K  M  E  V  *  F  E  V  L  *  R  R  G  K  Q  *  *  R  F  C  D  *  G  F  E  R  K  P  K  P  S  G  T  Q  I  S  N  W  E  *  T  L  H  S  K  G  K  R  G  F  G  *  E  G  F  I  E  W  W  C  F  G  D  T  K  K  V  K  Y  *  R  N  G  E  E  W  K  *  *  G  *  F  N  E  V  W  G  C  V  F  E  G  Y  F  E  G  V  *  R  E  V  I  C  S  *  A  N  F  W  C  *  F  V  *  R  R  R  I  *  K  K  C  *  R  F  A  *  D  E  L  E  G  F  S  E  V  Y  E  I  *  *  D  K  V  V  D  F  *  R  G  Y  W  S  F  F  G  I  G  V  *  R  F  Y  C  *  V  E  G  D  A  R  R  E  E  L  A  E  N  *  M  :  G  N  E  A  G  S  K  S  S  S  G  F  T  R  G  V  H  W  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96099" stop="96901"/>
                    <exon start="96975" stop="97032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDSNWFSKNASSQIQNLSSMSISSVNMSFSTGNNFISARSILHPKPNIQLQSSFVIKSPFQKSYTNPIFHRNFRKRSHFYHSPYAILGKWRSNSKSSEEGASNNEDFVTRVLKENPSQVEPKYLIGNKLYTLKEKEDLGKKGLLNGGVLEILKRLNIKGMVKNGSDEGSLMKSGDVFLKDILREYKGKLYVPEQIFGANLSEEEEFEKNVEDLPKMSLKDFQKYMKFDKIKLLTFKEDTGASLGLGSRDFIVELKEMPGEKSLQRTKWAMKLDQNQAQALLEEYTGP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99344" PGL_stop="103694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99344" e_stop="99393"/>
            <exon e_start="99495" e_stop="99560"/>
            <exon e_start="99932" e_stop="100027"/>
            <exon e_start="100115" e_stop="100243"/>
            <exon e_start="100321" e_stop="100373"/>
            <exon e_start="100689" e_stop="100884"/>
            <exon e_start="101588" e_stop="101702"/>
            <exon e_start="101909" e_stop="102183"/>
            <exon e_start="102404" e_stop="102487"/>
            <exon e_start="102583" e_stop="102695"/>
            <exon e_start="102769" e_stop="103018"/>
            <exon e_start="103250" e_stop="103694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.111" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.483" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99344" e_stop="99393" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.877">
            <gDNA_intron_boundary i_start="99394" i_stop="99494" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99495" e_stop="99560" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.111">
            <gDNA_intron_boundary i_start="99561" i_stop="99931" i_length="371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99932" e_stop="100027" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100028" i_stop="100114" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100115" e_stop="100243" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100244" i_stop="100320" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100321" e_stop="100373" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.862">
            <gDNA_intron_boundary i_start="100374" i_stop="100688" i_length="315"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100689" e_stop="100884" e_length="196"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="100885" i_stop="101587" i_length="703"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101588" e_stop="101702" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.726" acc_prob="0.992">
            <gDNA_intron_boundary i_start="101703" i_stop="101908" i_length="206"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101909" e_stop="102183" e_length="275"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102184" i_stop="102403" i_length="220"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102404" e_stop="102487" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.838">
            <gDNA_intron_boundary i_start="102488" i_stop="102582" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="102583" e_stop="102695" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="0.483" acc_prob="0.884">
            <gDNA_intron_boundary i_start="102696" i_stop="102768" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102769" e_stop="103018" e_length="250"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.990">
            <gDNA_intron_boundary i_start="103019" i_stop="103249" i_length="231"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="103250" e_stop="103694" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99344" stop="99393"/>
              <exon start="99495" stop="99560"/>
              <exon start="99932" stop="100027"/>
              <exon start="100115" stop="100243"/>
              <exon start="100321" stop="100373"/>
              <exon start="100689" stop="100884"/>
              <exon start="101588" stop="101702"/>
              <exon start="101909" stop="102183"/>
              <exon start="102404" stop="102487"/>
              <exon start="102583" stop="102695"/>
              <exon start="102769" stop="103018"/>
              <exon start="103250" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGCAAGGCATAGAATTCTCTCAGTCAAAGCCACAAGCACGTGTTGAT : GGTTCAACTGGAGTCACATTTAATGATGTAGCTGGGATTGAGGAAGCAGTGGAAGAACTTCAAGAG : TTGGTAAGATACCTGAAGAATCCTGAACTATTTGATAAATTGGGGATCAAGCCCCCACATGGAGTTCTTCTGGAGGGACCTCCTGGATGTGGAAAG : ACCCTGGTTGCCAAGGCAATAGCAGGTGAAGCTGGTGTTCCTTTTTACCAAATGGCGGGTTCTGAATTTGTGGAAGTTCTAGTCGGTGTTGGTTCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAG : GTGAATAAACCATCAGTTATCTTCATTGACGAAATTGATGCACTCGCAACCAG : ACGTCAAGGAATATTTAGTGAATCAACTGATCACCTCTATAACGCGGCAACTCAAGAAAGGGAAACTACTTTAAACCAGTTGTTGATCGAGCTAGATGGATTTGATACTGGGAAAGGTGTTATATTCCTAGGGGCTACAAATCGAAGGGATTTATTAGATCCCGCCCTTCTTCGTCCTGGTAGATTTGATCGCAAG : ATAAGAATTCGGCCTCCCAATGCAAAAGGAAGATTGGAAATTTTGAAAGTACATGCACGGAAAGTTAAATTATCAGATACTGTTGATTTGTCTAGTTATGCCCAAAATTTACCTG : GATGGTCAGGTGCAAAGCTGGCTCAGCTTCTCCAGGAGGCTGCTCTAGTAGCAGTCAGGAGAGGGCATAACTCAATTCTTCATTCAGATATGGATGATGCAGTTGATCGGCTTACAGTAGGACCTAGACGAGTTGGGATTGAGTTGGGTCATCAGGGGCAGTGTCGTCGAGCAATTACTGAGGTGGGGACTGCATTGACTTCTCATCTTCTGAGGCAATATGAGAATGCAGAAGTTGAGCGTTGTGACAGAATATCTATCAATCCGCGTGGCCAG : ACCTTGTCTCAAGTTGTGTTTCACCGTCTTGATGATGAGTCATACATGTTTGAGCGGCTACCACGGTTGCTTCATCGTCTTCAG : GTATTTCTTGGAGGGAGAGCTGCTGAAGAGGTCATTTATGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGATGCATCCTGGCTTGCCCGTAAGATAATCACAAT : ATGGAATATGAAAAACCCAATGGCCATACATGGAGAACCTCCCCCCTGGGTAAAGAGAGTGAAGTTTGTGGGTCCACGCCTGGACTTTGGAGGATCACTATATGATGATTATGACTTAATTGAGCCCCCGATCAACTTTAATTTGGATGACGATGTTGCTAAGAAGACAGAAGAGCTCATATGTGACATGTACGGGAAGACAGTAACTCTTCTGAGGCAGCATGATACTGCCTTACTCAAAACAGTGAAG : GTTCTTCTGAATCGGACTGAGATCAGTGGAGACGAGATCGACTTAATCCTGAGCCACTATCCACCAAATACACCCACAAGTCTTCTGCTGGAGGAGAGAGATCCCGCGAGTCTTCCATTTGTTGACGAAAAGCAAGAACAGCATAATAACATTGAGTACAGTCTGTCTTCATGAGAAAACGGAATCCTTGATCCAGGCTTTCTACCCTATTCGAAGCCAGTTTTGACGTGCATTCGGAACACGAAATATTACAGCTGAGAACTTTCTGACAAATAGTGAGATGCTAAAAATGCAGTTTGTTTGCTGTATGAATCCATATCTATAGGAATTTTGTTAAAACTGTTGATTTATTCTTCTGTGATTTTTGTATTTCAGTATATTACTATTGAAGAGGCAAAATCTTCACAACAAAATTAATATAAGAAAAGTAGTTGAATTACACTGC</gDNA_template>
            <first_frame> Y  G  K  A  *  N  S  L  S  Q  S  H  K  H  V  L  M :   V  Q  L  E  S  H  L  M  M  *  L  G  L  R  K  Q  W  K  N  F  K  S :   W  *  D  T  *  R  I  L  N  Y  L  I  N  W  G  S  S  P  H  M  E  F  F  W  R  D  L  L  D  V  E  R :   P  W  L  P  R  Q  *  Q  V  K  L  V  F  L  F  T  K  W  R  V  L  N  L  W  K  F  *  S  V  L  V  L  L  V  L  E  I  C  S  R  E  P  R :   *  I  N  H  Q  L  S  S  L  T  K  L  M  H  S  Q  P   : D  V  K  E  Y  L  V  N  Q  L  I  T  S  I  T  R  Q  L  K  K  G  K  L  L  *  T  S  C  *  S  S  *  M  D  L  I  L  G  K  V  L  Y  S  *  G  L  Q  I  E  G  I  Y  *  I  P  P  F  F  V  L  V  D  L  I  A  R :   *  E  F  G  L  P  M  Q  K  E  D  W  K  F  *  K  Y  M  H  G  K  L  N  Y  Q  I  L  L  I  C  L  V  M  P  K  I  Y  L  :  D  G  Q  V  Q  S  W  L  S  F  S  R  R  L  L  *  *  Q  S  G  E  G  I  T  Q  F  F  I  Q  I  W  M  M  Q  L  I  G  L  Q  *  D  L  D  E  L  G  L  S  W  V  I  R  G  S  V  V  E  Q  L  L  R  W  G  L  H  *  L  L  I  F  *  G  N  M  R  M  Q  K  L  S  V  V  T  E  Y  L  S  I  R  V  A  R :   P  C  L  K  L  C  F  T  V  L  M  M  S  H  T  C  L  S  G  Y  H  G  C  F  I  V  F  R :   Y  F  L  E  G  E  L  L  K  R  S  F  M  D  V  I  L  Q  E  H  L  *  T  T  L  L  M  H  P  G  L  P  V  R  *  S  Q   : Y  G  I  *  K  T  Q  W  P  Y  M  E  N  L  P  P  G  *  R  E  *  S  L  W  V  H  A  W  T  L  E  D  H  Y  M  M  I  M  T  *  L  S  P  R  S  T  L  I  W  M  T  M  L  L  R  R  Q  K  S  S  Y  V  T  C  T  G  R  Q  *  L  F  *  G  S  M  I  L  P  Y  S  K  Q  *  R :   F  F  *  I  G  L  R  S  V  E  T  R  S  T  *  S  *  A  T  I  H  Q  I  H  P  Q  V  F  C  W  R  R  E  I  P  R  V  F  H  L  L  T  K  S  K  N  S  I  I  T  L  S  T  V  C  L  H  E  K  T  E  S  L  I  Q  A  F  Y  P  I  R  S  Q  F  *  R  A  F  G  T  R  N  I  T  A  E  N  F  L  T  N  S  E  M  L  K  M  Q  F  V  C  C  M  N  P  Y  L  *  E  F  C  *  N  C  *  F  I  L  L  *  F  L  Y  F  S  I  L  L  L  K  R  Q  N  L  H  N  K  I  N  I  R  K  V  V  E  L  H  C </first_frame>
            <second_frame>  M  A  R  H  R  I  L  S  V  K  A  T  S  T  C  *   : W  F  N  W  S  H  I  *  *  C  S  W  D  *  G  S  S  G  R  T  S  R   : V  G  K  I  P  E  E  S  *  T  I  *  *  I  G  D  Q  A  P  T  W  S  S  S  G  G  T  S  W  M  W  K   : D  P  G  C  Q  G  N  S  R  *  S  W  C  S  F  L  P  N  G  G  F  *  I  C  G  S  S  S  R  C  W  F  C  S  Y  *  R  F  V  Q  E  S  Q   : G  E  *  T  I  S  Y  L  H  *  R  N  *  C  T  R  N  Q  :  T  S  R  N  I  *  *  I  N  *  S  P  L  *  R  G  N  S  R  K  G  N  Y  F  K  P  V  V  D  R  A  R  W  I  *  Y  W  E  R  C  Y  I  P  R  G  Y  K  S  K  G  F  I  R  S  R  P  S  S  S  W  *  I  *  S  Q   : D  K  N  S  A  S  Q  C  K  R  K  I  G  N  F  E  S  T  C  T  E  S  *  I  I  R  Y  C  *  F  V  *  L  C  P  K  F  T  W :   M  V  R  C  K  A  G  S  A  S  P  G  G  C  S  S  S  S  Q  E  R  A  *  L  N  S  S  F  R  Y  G  *  C  S  *  S  A  Y  S  R  T  *  T  S  W  D  *  V  G  S  S  G  A  V  S  S  S  N  Y  *  G  G  D  C  I  D  F  S  S  S  E  A  I  *  E  C  R  S  *  A  L  *  Q  N  I  Y  Q  S  A  W  P   : D  L  V  S  S  C  V  S  P  S  *  *  *  V  I  H  V  *  A  A  T  T  V  A  S  S  S  S   : G  I  S  W  R  E  S  C  *  R  G  H  L  W  T  *  Y  F  K  S  I  C  K  L  P  C  *  C  I  L  A  C  P  *  D  N  H  N  :  M  E  Y  E  K  P  N  G  H  T  W  R  T  S  P  L  G  K  E  S  E  V  C  G  S  T  P  G  L  W  R  I  T  I  *  *  L  *  L  N  *  A  P  D  Q  L  *  F  G  *  R  C  C  *  E  D  R  R  A  H  M  *  H  V  R  E  D  S  N  S  S  E  A  A  *  Y  C  L  T  Q  N  S  E   : G  S  S  E  S  D  *  D  Q  W  R  R  D  R  L  N  P  E  P  L  S  T  K  Y  T  H  K  S  S  A  G  G  E  R  S  R  E  S  S  I  C  *  R  K  A  R  T  A  *  *  H  *  V  Q  S  V  F  M  R  K  R  N  P  *  S  R  L  S  T  L  F  E  A  S  F  D  V  H  S  E  H  E  I  L  Q  L  R  T  F  *  Q  I  V  R  C  *  K  C  S  L  F  A  V  *  I  H  I  Y  R  N  F  V  K  T  V  D  L  F  F  C  D  F  C  I  S  V  Y  Y  Y  *  R  G  K  I  F  T  T  K  L  I  *  E  K  *  L  N  Y  T   </second_frame>
            <third_frame>   W  Q  G  I  E  F  S  Q  S  K  P  Q  A  R  V  D  :  G  S  T  G  V  T  F  N  D  V  A  G  I  E  E  A  V  E  E  L  Q  E  :  L  V  R  Y  L  K  N  P  E  L  F  D  K  L  G  I  K  P  P  H  G  V  L  L  E  G  P  P  G  C  G  K  :  T  L  V  A  K  A  I  A  G  E  A  G  V  P  F  Y  Q  M  A  G  S  E  F  V  E  V  L  V  G  V  G  S  A  R  I  R  D  L  F  K  R  A  K  :  V  N  K  P  S  V  I  F  I  D  E  I  D  A  L  A  T  R :   R  Q  G  I  F  S  E  S  T  D  H  L  Y  N  A  A  T  Q  E  R  E  T  T  L  N  Q  L  L  I  E  L  D  G  F  D  T  G  K  G  V  I  F  L  G  A  T  N  R  R  D  L  L  D  P  A  L  L  R  P  G  R  F  D  R  K  :  I  R  I  R  P  P  N  A  K  G  R  L  E  I  L  K  V  H  A  R  K  V  K  L  S  D  T  V  D  L  S  S  Y  A  Q  N  L  P   : G  W  S  G  A  K  L  A  Q  L  L  Q  E  A  A  L  V  A  V  R  R  G  H  N  S  I  L  H  S  D  M  D  D  A  V  D  R  L  T  V  G  P  R  R  V  G  I  E  L  G  H  Q  G  Q  C  R  R  A  I  T  E  V  G  T  A  L  T  S  H  L  L  R  Q  Y  E  N  A  E  V  E  R  C  D  R  I  S  I  N  P  R  G  Q  :  T  L  S  Q  V  V  F  H  R  L  D  D  E  S  Y  M  F  E  R  L  P  R  L  L  H  R  L  Q  :  V  F  L  G  G  R  A  A  E  E  V  I  Y  G  R  D  T  S  R  A  S  V  N  Y  L  A  D  A  S  W  L  A  R  K  I  I  T  I :   W  N  M  K  N  P  M  A  I  H  G  E  P  P  P  W  V  K  R  V  K  F  V  G  P  R  L  D  F  G  G  S  L  Y  D  D  Y  D  L  I  E  P  P  I  N  F  N  L  D  D  D  V  A  K  K  T  E  E  L  I  C  D  M  Y  G  K  T  V  T  L  L  R  Q  H  D  T  A  L  L  K  T  V  K  :  V  L  L  N  R  T  E  I  S  G  D  E  I  D  L  I  L  S  H  Y  P  P  N  T  P  T  S  L  L  L  E  E  R  D  P  A  S  L  P  F  V  D  E  K  Q  E  Q  H  N  N  I  E  Y  S  L  S  S  *  E  N  G  I  L  D  P  G  F  L  P  Y  S  K  P  V  L  T  C  I  R  N  T  K  Y  Y  S  *  E  L  S  D  K  *  *  D  A  K  N  A  V  C  L  L  Y  E  S  I  S  I  G  I  L  L  K  L  L  I  Y  S  S  V  I  F  V  F  Q  Y  I  T  I  E  E  A  K  S  S  Q  Q  N  *  Y  K  K  S  S  *  I  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99346" stop="99393"/>
                    <exon start="99495" stop="99560"/>
                    <exon start="99932" stop="100027"/>
                    <exon start="100115" stop="100243"/>
                    <exon start="100321" stop="100373"/>
                    <exon start="100689" stop="100884"/>
                    <exon start="101588" stop="101702"/>
                    <exon start="101909" stop="102183"/>
                    <exon start="102404" stop="102487"/>
                    <exon start="102583" stop="102695"/>
                    <exon start="102769" stop="103018"/>
                    <exon start="103250" stop="103423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQGIEFSQSKPQARVDGSTGVTFNDVAGIEEAVEELQELVRYLKNPELFDKLGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFSESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRIRPPNAKGRLEILKVHARKVKLSDTVDLSSYAQNLPGWSGAKLAQLLQEAALVAVRRGHNSILHSDMDDAVDRLTVGPRRVGIELGHQGQCRRAITEVGTALTSHLLRQYENAEVERCDRISINPRGQTLSQVVFHRLDDESYMFERLPRLLHRLQVFLGGRAAEEVIYGRDTSRASVNYLADASWLARKIITIWNMKNPMAIHGEPPPWVKRVKFVGPRLDFGGSLYDDYDLIEPPINFNLDDDVAKKTEELICDMYGKTVTLLRQHDTALLKTVKVLLNRTEISGDEIDLILSHYPPNTPTSLLLEERDPASLPFVDEKQEQHNNIEYSLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="104306" PGL_stop="106790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104306" e_stop="104422"/>
            <exon e_start="105773" e_stop="106790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104306" e_stop="104422" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104423" i_stop="105772" i_length="1350"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="105773" e_stop="106790" e_length="1018"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104306" stop="104422"/>
              <exon start="105773" stop="106790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTAACATCGTATACAACGATGTAGTCTCCAAACCTCAGCTGTCTTTGCGGCTCTTCGTTTCTATTTTCTGTGCCATTCTGCTTTTCTATTCTATGTTCGTTTATGGATATGGAG : GGATTTCTCTTGCCTATGCTGAGACTATTACCAATTATAGTGTTAAAGATATAGAGTTCAACAGCTCCACTCAACCACTTTTAGAAAGCGGAGGGAAGAGTAGCAAAACTGAAATGCTATTGGAACTCAACATATCAGTTAAGATTAATGATTCTTGTAGTCCTACGGATAACATTGCAACCCCTGAGCATTCACTGCAGAAAACAAGTGCATTGGAAGATGCAGTTTCAACTATTTTAGGTTACAATATGTTAATATGCCAAATGCAGCCACAAGTAGTGCATATCCATCGGAATGAAGGTCGAATACTCAATGGAAGAAGTCACTTGACCTATCCAAATCTGGAAGAATTCAGAAGCATTACAAAACAAGAAAAGAGAGGGAGCACCGCAAGTCAGTTAGTAAATATCACCCACAGGCTTGAGCCTGATGGTACGCCTTACAATTATGCCTCGTCATCCAAGGGTGCTAAAGTGGTGGCCCATAATAAAGAAGCAAAAGGAGCAAACAACGTACTGAACAAGGATCATGATAAGTATCTCAGAAACCCTTGTTCTGTGGCCGGGAAATTCTTTGTTATTGAGTTTGCAGATGAAACTCTAGTTGATGCAGTCAAAATTGCAAATTTTGAGCATTATTCATCTATGCTAAAAGAATTTGAGTTATCAGGGAGTTTGGTATATCCAACTGAGACGTGGAATCCACTGGGAACTTTTGTTGCTGAAAATGTCAAGCATGCTCAGTGTTTTAAGCTACCTGAACCAAAATGGGTTAGATACTTGAAGCTAAATTTACTCACACATTATGGCTCTGAATTTTATTGTACTATCAGTTTTATCGAGGTATATGGTATTGATGCCATAGAGCAGATGCTTGAGGATCTCATCGTCCATTCCCCCGAGTCTTCTCCTGATAAAATGGGAAATCTTAACAAGACTACTATGCTGTCTATGATACCAGATTCAGGTTCTGACTACCATGAAACAAAGGATGTCGTCCAAAATGTGGTTGAGTCTGC</gDNA_template>
            <first_frame> L  V  T  S  Y  T  T  M  *  S  P  N  L  S  C  L  C  G  S  S  F  L  F  S  V  P  F  C  F  S  I  L  C  S  F  M  D  M  E  :  G  F  L  L  P  M  L  R  L  L  P  I  I  V  L  K  I  *  S  S  T  A  P  L  N  H  F  *  K  A  E  G  R  V  A  K  L  K  C  Y  W  N  S  T  Y  Q  L  R  L  M  I  L  V  V  L  R  I  T  L  Q  P  L  S  I  H  C  R  K  Q  V  H  W  K  M  Q  F  Q  L  F  *  V  T  I  C  *  Y  A  K  C  S  H  K  *  C  I  S  I  G  M  K  V  E  Y  S  M  E  E  V  T  *  P  I  Q  I  W  K  N  S  E  A  L  Q  N  K  K  R  E  G  A  P  Q  V  S  *  *  I  S  P  T  G  L  S  L  M  V  R  L  T  I  M  P  R  H  P  R  V  L  K  W  W  P  I  I  K  K  Q  K  E  Q  T  T  Y  *  T  R  I  M  I  S  I  S  E  T  L  V  L  W  P  G  N  S  L  L  L  S  L  Q  M  K  L  *  L  M  Q  S  K  L  Q  I  L  S  I  I  H  L  C  *  K  N  L  S  Y  Q  G  V  W  Y  I  Q  L  R  R  G  I  H  W  E  L  L  L  L  K  M  S  S  M  L  S  V  L  S  Y  L  N  Q  N  G  L  D  T  *  S  *  I  Y  S  H  I  M  A  L  N  F  I  V  L  S  V  L  S  R  Y  M  V  L  M  P  *  S  R  C  L  R  I  S  S  S  I  P  P  S  L  L  L  I  K  W  E  I  L  T  R  L  L  C  C  L  *  Y  Q  I  Q  V  L  T  T  M  K  Q  R  M  S  S  K  M  W  L  S  L  </first_frame>
            <second_frame>  S  *  H  R  I  Q  R  C  S  L  Q  T  S  A  V  F  A  A  L  R  F  Y  F  L  C  H  S  A  F  L  F  Y  V  R  L  W  I  W  R :   D  F  S  C  L  C  *  D  Y  Y  Q  L  *  C  *  R  Y  R  V  Q  Q  L  H  S  T  T  F  R  K  R  R  E  E  *  Q  N  *  N  A  I  G  T  Q  H  I  S  *  D  *  *  F  L  *  S  Y  G  *  H  C  N  P  *  A  F  T  A  E  N  K  C  I  G  R  C  S  F  N  Y  F  R  L  Q  Y  V  N  M  P  N  A  A  T  S  S  A  Y  P  S  E  *  R  S  N  T  Q  W  K  K  S  L  D  L  S  K  S  G  R  I  Q  K  H  Y  K  T  R  K  E  R  E  H  R  K  S  V  S  K  Y  H  P  Q  A  *  A  *  W  Y  A  L  Q  L  C  L  V  I  Q  G  C  *  S  G  G  P  *  *  R  S  K  R  S  K  Q  R  T  E  Q  G  S  *  *  V  S  Q  K  P  L  F  C  G  R  E  I  L  C  Y  *  V  C  R  *  N  S  S  *  C  S  Q  N  C  K  F  *  A  L  F  I  Y  A  K  R  I  *  V  I  R  E  F  G  I  S  N  *  D  V  E  S  T  G  N  F  C  C  *  K  C  Q  A  C  S  V  F  *  A  T  *  T  K  M  G  *  I  L  E  A  K  F  T  H  T  L  W  L  *  I  L  L  Y  Y  Q  F  Y  R  G  I  W  Y  *  C  H  R  A  D  A  *  G  S  H  R  P  F  P  R  V  F  S  *  *  N  G  K  S  *  Q  D  Y  Y  A  V  Y  D  T  R  F  R  F  *  L  P  *  N  K  G  C  R  P  K  C  G  *  V  C </second_frame>
            <third_frame>   R  N  I  V  Y  N  D  V  V  S  K  P  Q  L  S  L  R  L  F  V  S  I  F  C  A  I  L  L  F  Y  S  M  F  V  Y  G  Y  G   : G  I  S  L  A  Y  A  E  T  I  T  N  Y  S  V  K  D  I  E  F  N  S  S  T  Q  P  L  L  E  S  G  G  K  S  S  K  T  E  M  L  L  E  L  N  I  S  V  K  I  N  D  S  C  S  P  T  D  N  I  A  T  P  E  H  S  L  Q  K  T  S  A  L  E  D  A  V  S  T  I  L  G  Y  N  M  L  I  C  Q  M  Q  P  Q  V  V  H  I  H  R  N  E  G  R  I  L  N  G  R  S  H  L  T  Y  P  N  L  E  E  F  R  S  I  T  K  Q  E  K  R  G  S  T  A  S  Q  L  V  N  I  T  H  R  L  E  P  D  G  T  P  Y  N  Y  A  S  S  S  K  G  A  K  V  V  A  H  N  K  E  A  K  G  A  N  N  V  L  N  K  D  H  D  K  Y  L  R  N  P  C  S  V  A  G  K  F  F  V  I  E  F  A  D  E  T  L  V  D  A  V  K  I  A  N  F  E  H  Y  S  S  M  L  K  E  F  E  L  S  G  S  L  V  Y  P  T  E  T  W  N  P  L  G  T  F  V  A  E  N  V  K  H  A  Q  C  F  K  L  P  E  P  K  W  V  R  Y  L  K  L  N  L  L  T  H  Y  G  S  E  F  Y  C  T  I  S  F  I  E  V  Y  G  I  D  A  I  E  Q  M  L  E  D  L  I  V  H  S  P  E  S  S  P  D  K  M  G  N  L  N  K  T  T  M  L  S  M  I  P  D  S  G  S  D  Y  H  E  T  K  D  V  V  Q  N  V  V  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104308" stop="104422"/>
                    <exon start="105773" stop="106788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNIVYNDVVSKPQLSLRLFVSIFCAILLFYSMFVYGYGGISLAYAETITNYSVKDIEFNSSTQPLLESGGKSSKTEMLLELNISVKINDSCSPTDNIATPEHSLQKTSALEDAVSTILGYNMLICQMQPQVVHIHRNEGRILNGRSHLTYPNLEEFRSITKQEKRGSTASQLVNITHRLEPDGTPYNYASSSKGAKVVAHNKEAKGANNVLNKDHDKYLRNPCSVAGKFFVIEFADETLVDAVKIANFEHYSSMLKEFELSGSLVYPTETWNPLGTFVAENVKHAQCFKLPEPKWVRYLKLNLLTHYGSEFYCTISFIEVYGIDAIEQMLEDLIVHSPESSPDKMGNLNKTTMLSMIPDSGSDYHETKDVVQNVVES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="111227" PGL_stop="110685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111227" e_stop="110685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="111227" e_stop="110685" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111227" stop="110685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTCAAACCCAAAAAATGTCAAATTATTAATACTTTTACCTACAATATATAGAACTTACGGATTATAATTCTACATATAAAAGTGTGTAAGAGGAGATCCGTAGTAACACATCCACGTAAAATTCTAACTTCTCTATCCTTCAGATTAAAGATCTACTAGACCTAAAAGGCCACCTAATGCTTTCATGTAATAGTTACAGGAAGACTCCGTACTACATAAAAAGATTAGTGAGGTTTACACCCTATTGTTAGAACTGAAAAATGTTGATATGAAGGAATAAAATTACATTCTTTAATAGGAGAAGTCTTCCAATATTCCGATGAAGTAATACGTAGAAATAATAGGAGTATTCAACTTTTAAAGTATAGAAAAGATATCACTTTTCTCTGTTAGACTATGACTATGAGTACTTGATCCTTTCTCACCCTAAGATGGAGTTGATCGTGTAAAAATCTTTAGATGGTATATGTATACAACTTGTGAAATGCAGTGAGCTTCTAACTGTAAAGTTGTTATCTTTAATGTCTGATGCTTTCTGT</gDNA_template>
            <first_frame> H  I  Q  T  Q  K  M  S  N  Y  *  Y  F  Y  L  Q  Y  I  E  L  T  D  Y  N  S  T  Y  K  S  V  *  E  E  I  R  S  N  T  S  T  *  N  S  N  F  S  I  L  Q  I  K  D  L  L  D  L  K  G  H  L  M  L  S  C  N  S  Y  R  K  T  P  Y  Y  I  K  R  L  V  R  F  T  P  Y  C  *  N  *  K  M  L  I  *  R  N  K  I  T  F  F  N  R  R  S  L  P  I  F  R  *  S  N  T  *  K  *  *  E  Y  S  T  F  K  V  *  K  R  Y  H  F  S  L  L  D  Y  D  Y  E  Y  L  I  L  S  H  P  K  M  E  L  I  V  *  K  S  L  D  G  I  C  I  Q  L  V  K  C  S  E  L  L  T  V  K  L  L  S  L  M  S  D  A  F  C </first_frame>
            <second_frame>  T  F  K  P  K  K  C  Q  I  I  N  T  F  T  Y  N  I  *  N  L  R  I  I  I  L  H  I  K  V  C  K  R  R  S  V  V  T  H  P  R  K  I  L  T  S  L  S  F  R  L  K  I  Y  *  T  *  K  A  T  *  C  F  H  V  I  V  T  G  R  L  R  T  T  *  K  D  *  *  G  L  H  P  I  V  R  T  E  K  C  *  Y  E  G  I  K  L  H  S  L  I  G  E  V  F  Q  Y  S  D  E  V  I  R  R  N  N  R  S  I  Q  L  L  K  Y  R  K  D  I  T  F  L  C  *  T  M  T  M  S  T  *  S  F  L  T  L  R  W  S  *  S  C  K  N  L  *  M  V  Y  V  Y  N  L  *  N  A  V  S  F  *  L  *  S  C  Y  L  *  C  L  M  L  S   </second_frame>
            <third_frame>   H  S  N  P  K  N  V  K  L  L  I  L  L  P  T  I  Y  R  T  Y  G  L  *  F  Y  I  *  K  C  V  R  G  D  P  *  *  H  I  H  V  K  F  *  L  L  Y  P  S  D  *  R  S  T  R  P  K  R  P  P  N  A  F  M  *  *  L  Q  E  D  S  V  L  H  K  K  I  S  E  V  Y  T  L  L  L  E  L  K  N  V  D  M  K  E  *  N  Y  I  L  *  *  E  K  S  S  N  I  P  M  K  *  Y  V  E  I  I  G  V  F  N  F  *  S  I  E  K  I  S  L  F  S  V  R  L  *  L  *  V  L  D  P  F  S  P  *  D  G  V  D  R  V  K  I  F  R  W  Y  M  Y  T  T  C  E  M  Q  *  A  S  N  C  K  V  V  I  F  N  V  *  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C08HBa0202N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="116939" PGL_stop="125545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116939" e_stop="117460"/>
            <exon e_start="120179" e_stop="120375"/>
            <exon e_start="122649" e_stop="123041"/>
            <exon e_start="123309" e_stop="123332"/>
            <exon e_start="123744" e_stop="123752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.068" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.440" e_score="0.625"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116939" e_stop="117460" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="117461" i_stop="120178" i_length="2718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120179" e_stop="120375" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.068" acc_prob="0.931">
            <gDNA_intron_boundary i_start="120376" i_stop="122648" i_length="2273"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="122649" e_stop="123041" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123042" i_stop="123308" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="123309" e_stop="123332" e_length="24"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.440">
            <gDNA_intron_boundary i_start="123333" i_stop="123743" i_length="411"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="123744" e_stop="123752" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116939" stop="117460"/>
              <exon start="120179" stop="120375"/>
              <exon start="122649" stop="123041"/>
              <exon start="123309" stop="123332"/>
              <exon start="123744" stop="123752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCCAGTAATACAAATAGGGTTTCAAAATTGAATTCTCCGAAACCCTAATCGGTCTTTTATGAACGTCGACGACGAGTTTTTCATGACTTATGAATGGATATTAGTTTTTTCTCCGGCGCCGTCACGTTAATCTGTTGTTTTTTCGCCGTCGCTGCCGCTTGTTTGACTCACCGATCAAAATCGGTGCGGACGAAGGGCGGAGAGGATTCCTGCAACTGTGCTTGTTCGCATGGTAGTTGTGGAGGAGGACGTTTTGATAAGACTTCGGTTTTGAACGGAGGGAGTAGTGGTAGTAGTGTTTTTGGTGGTTTTGAGGAAGAAATGGTTGAGAAAGTGTCTGTGACAGTGGCTGCGGAGAAACTGACAGGGGCGTCGATGATGGAGCAGCTTGTTCCTGAAATTACGACGCATGCGTTGAGCTATTTGGATTATCCGAGTCTTTGTAGGCTTTCGATGACGAATTCGCTTATGAGGAAGGCTGCAAATGATGATAATGCATGGAAAGCTCTCTATCACAAG : GATTTCACATTGGAGCAGGATTCTCTGTCTCCAATTAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTATGAATGTCAATGCTGATTTTTTTAATATTATTAGAGAGAGATCAGTTCCAGCTATGGAACGTTTTTGGCTCAATGCAGATTACGTGAAGTGTTTTCATGCCTCTGGAGAGTGCTTTACGGG : TCACAATGCAGTCATTGGTAGCTGGCAACTGGCTTTTAACTGGGAGCAGAATGTTGATTTTGAAATTAGAGACGTGAAGGCAAGAGTGATGACAGATTCGGCTTGGGTGACTATGAAAGCTTATCTTAATATGGGATCAGGTACCGTGACTAACGTGTTTGAACTCCATAATGGGAGATGGTACATGGTCCATCATCACTGCTCAGTGATGCTCATTCATGGAGGTGCTGGGCAACAAGCTGTGCAGGGATAGGATTAAAGAAGACAAACTGTGAAGAAGATTGATTATTCTTTTGAAAATTGGAAAGTGGTATAGAGATCGTTTATAGTAGAATTGACTTCCCCGGGAATCTCCATAAAATTATTTTTATGTAGTTCCTGCTTCCTTTTTCC : ATAAAATACAAAAGTAACTACATA : AAGAAGAAA</gDNA_template>
            <first_frame> N  S  S  N  T  N  R  V  S  K  L  N  S  P  K  P  *  S  V  F  Y  E  R  R  R  R  V  F  H  D  L  *  M  D  I  S  F  F  S  G  A  V  T  L  I  C  C  F  F  A  V  A  A  A  C  L  T  H  R  S  K  S  V  R  T  K  G  G  E  D  S  C  N  C  A  C  S  H  G  S  C  G  G  G  R  F  D  K  T  S  V  L  N  G  G  S  S  G  S  S  V  F  G  G  F  E  E  E  M  V  E  K  V  S  V  T  V  A  A  E  K  L  T  G  A  S  M  M  E  Q  L  V  P  E  I  T  T  H  A  L  S  Y  L  D  Y  P  S  L  C  R  L  S  M  T  N  S  L  M  R  K  A  A  N  D  D  N  A  W  K  A  L  Y  H  K  :  D  F  T  L  E  Q  D  S  L  S  P  I  N  G  W  K  A  Y  Y  A  A  T  R  A  I  M  N  V  N  A  D  F  F  N  I  I  R  E  R  S  V  P  A  M  E  R  F  W  L  N  A  D  Y  V  K  C  F  H  A  S  G  E  C  F  T  G :   H  N  A  V  I  G  S  W  Q  L  A  F  N  W  E  Q  N  V  D  F  E  I  R  D  V  K  A  R  V  M  T  D  S  A  W  V  T  M  K  A  Y  L  N  M  G  S  G  T  V  T  N  V  F  E  L  H  N  G  R  W  Y  M  V  H  H  H  C  S  V  M  L  I  H  G  G  A  G  Q  Q  A  V  Q  G  *  D  *  R  R  Q  T  V  K  K  I  D  Y  S  F  E  N  W  K  V  V  *  R  S  F  I  V  E  L  T  S  P  G  I  S  I  K  L  F  L  C  S  S  C  F  L  F  P :   *  N  T  K  V  T  T  * :   R  R   </first_frame>
            <second_frame>  T  P  V  I  Q  I  G  F  Q  N  *  I  L  R  N  P  N  R  S  F  M  N  V  D  D  E  F  F  M  T  Y  E  W  I  L  V  F  S  P  A  P  S  R  *  S  V  V  F  S  P  S  L  P  L  V  *  L  T  D  Q  N  R  C  G  R  R  A  E  R  I  P  A  T  V  L  V  R  M  V  V  V  E  E  D  V  L  I  R  L  R  F  *  T  E  G  V  V  V  V  V  F  L  V  V  L  R  K  K  W  L  R  K  C  L  *  Q  W  L  R  R  N  *  Q  G  R  R  *  W  S  S  L  F  L  K  L  R  R  M  R  *  A  I  W  I  I  R  V  F  V  G  F  R  *  R  I  R  L  *  G  R  L  Q  M  M  I  M  H  G  K  L  S  I  T  R :   I  S  H  W  S  R  I  L  C  L  Q  L  M  D  G  R  L  T  M  Q  L  Q  E  P  L  *  M  S  M  L  I  F  L  I  L  L  E  R  D  Q  F  Q  L  W  N  V  F  G  S  M  Q  I  T  *  S  V  F  M  P  L  E  S  A  L  R   : V  T  M  Q  S  L  V  A  G  N  W  L  L  T  G  S  R  M  L  I  L  K  L  E  T  *  R  Q  E  *  *  Q  I  R  L  G  *  L  *  K  L  I  L  I  W  D  Q  V  P  *  L  T  C  L  N  S  I  M  G  D  G  T  W  S  I  I  T  A  Q  *  C  S  F  M  E  V  L  G  N  K  L  C  R  D  R  I  K  E  D  K  L  *  R  R  L  I  I  L  L  K  I  G  K  W  Y  R  D  R  L  *  *  N  *  L  P  R  E  S  P  *  N  Y  F  Y  V  V  P  A  S  F  F   : H  K  I  Q  K  *  L  H   : K  E  E  </second_frame>
            <third_frame>   L  Q  *  Y  K  *  G  F  K  I  E  F  S  E  T  L  I  G  L  L  *  T  S  T  T  S  F  S  *  L  M  N  G  Y  *  F  F  L  R  R  R  H  V  N  L  L  F  F  R  R  R  C  R  L  F  D  S  P  I  K  I  G  A  D  E  G  R  R  G  F  L  Q  L  C  L  F  A  W  *  L  W  R  R  T  F  *  *  D  F  G  F  E  R  R  E  *  W  *  *  C  F  W  W  F  *  G  R  N  G  *  E  S  V  C  D  S  G  C  G  E  T  D  R  G  V  D  D  G  A  A  C  S  *  N  Y  D  A  C  V  E  L  F  G  L  S  E  S  L  *  A  F  D  D  E  F  A  Y  E  E  G  C  K  *  *  *  C  M  E  S  S  L  S  Q   : G  F  H  I  G  A  G  F  S  V  S  N  *  W  M  E  G  L  L  C  S  Y  K  S  H  Y  E  C  Q  C  *  F  F  *  Y  Y  *  R  E  I  S  S  S  Y  G  T  F  L  A  Q  C  R  L  R  E  V  F  S  C  L  W  R  V  L  Y  G  :  S  Q  C  S  H  W  *  L  A  T  G  F  *  L  G  A  E  C  *  F  *  N  *  R  R  E  G  K  S  D  D  R  F  G  L  G  D  Y  E  S  L  S  *  Y  G  I  R  Y  R  D  *  R  V  *  T  P  *  W  E  M  V  H  G  P  S  S  L  L  S  D  A  H  S  W  R  C  W  A  T  S  C  A  G  I  G  L  K  K  T  N  C  E  E  D  *  L  F  F  *  K  L  E  S  G  I  E  I  V  Y  S  R  I  D  F  P  G  N  L  H  K  I  I  F  M  *  F  L  L  P  F  S  :  I  K  Y  K  S  N  Y  I  :  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117035" stop="117460"/>
                    <exon start="120179" stop="120375"/>
                    <exon start="122649" stop="122901"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDISFFSGAVTLICCFFAVAAACLTHRSKSVRTKGGEDSCNCACSHGSCGGGRFDKTSVLNGGSSGSSVFGGFEEEMVEKVSVTVAAEKLTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSLSPINGWKAYYAATRAIMNVNADFFNIIRERSVPAMERFWLNADYVKCFHASGECFTGHNAVIGSWQLAFNWEQNVDFEIRDVKARVMTDSAWVTMKAYLNMGSGTVTNVFELHNGRWYMVHHHCSVMLIHGGAGQQAVQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123495" e_stop="123819"/>
            <exon e_start="124425" e_stop="124667"/>
            <exon e_start="125246" e_stop="125545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123819" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124425" e_stop="124667" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125246" e_stop="125545" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123495" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGATGTCCAATAACAAACATTATCACCATCCATAAGGTTCCGGGGACTGAGCACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG : AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG : CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</gDNA_template>
            <first_frame> K  *  C  P  I  T  N  I  I  T  I  H  K  V  P  G  T  E  H  S  G  A  E  W  L  R  R  *  S  P  P  P  A  W  P  P  V  V  A  A  P  S  F  S  P  S  Q  N  Y  H  P  K  S  C  K  F  Y  L  T  N  K  S  F  S  Q  T  K  S  G  L  H  C  P  F  S  V  L  L  Q  L  H  L  *  K  K  K  M  G  R  L  T  M  S  F  Q  L  R  *  M  K  N  L  V  Q  F  Y  L  P   : E  H  V  R  V  V  G  D  W  R  L  K  V  V  V  M  A  K  D  G  Y  K  E  G  L  Q  Q  F  Q  G  L  V  G  G  Q  S  R  L  T  G  R  A  L  R  L  L  L  L  V  V  G  T  K  G  L  D  K  A  W  M  K  L  S  L  G  K  E  V  E  L  V  L  S  E  L  T  L  R  F  N  Q   : A  R  K  R  T  E  R  R  D  R  R  A  N  C  W  N  V  I  S  R  D  W  R  L  F  G  *  A  R  S  L  S  Y  *  L  G  S  F  L  V  S  L  *  V  F  W  *  *  K  L  E  L  R  V  F  I  Q  I  P  N  G  Y  L  C  *  Q  L  *  S  R  *  T  M  L  F  Y  F  Q  L  Y  Y  L  V  C  Y  W  S  R  L  H  P  *  N  Y  T  S  Y  V  V  V  </first_frame>
            <second_frame>  N  D  V  Q  *  Q  T  L  S  P  S  I  R  F  R  G  L  S  T  V  E  Q  S  G  *  E  D  D  H  R  H  Q  H  G  H  R  W  *  Q  L  R  L  S  L  R  P  K  T  T  I  P  K  V  A  N  F  I  S  Q  T  S  L  F  H  K  Q  K  V  V  Y  I  A  L  S  L  F  F  F  N  S  T  C  R  R  R  K  W  V  D  *  R  C  P  S  S  F  D  K  *  R  I  *  F  S  F  T  S  R  :  S  M  *  G  L  W  E  I  G  D  *  K  W  L  *  W  R  R  T  D  T  R  R  D  C  N  N  S  R  V  W  L  V  A  N  Q  G  L  Q  A  V  P  C  V  C  C  F  W  W  *  V  Q  K  V  W  T  K  H  G  *  S  C  L  W  E  R  R  *  S  *  Y  C  R  N  *  R  *  G  S  I  K  :  H  E  K  E  Q  N  E  E  I  E  E  L  T  V  G  M  *  F  Q  E  I  G  G  C  L  A  E  H  G  V  *  A  T  N  L  A  V  S  S  S  L  Y  R  F  F  G  D  K  N  L  N  C  V  Y  L  Y  K  S  Q  M  V  I  C  V  S  N  C  N  Q  D  E  L  C  C  F  I  S  N  Y  T  I  *  F  V  T  G  Q  D  F  T  R  E  I  I  L  A  M  L  L  L </second_frame>
            <third_frame>   M  M  S  N  N  K  H  Y  H  H  P  *  G  S  G  D  *  A  Q  W  S  R  V  A  E  K  M  I  T  A  T  S  M  A  T  G  G  S  S  S  V  F  L  S  V  P  K  L  P  S  Q  K  L  Q  I  L  S  H  K  Q  V  F  F  T  N  K  K  W  S  T  L  P  F  L  C  S  S  S  T  P  L  V  E  E  E  N  G  S  T  D  D  V  L  P  A  S  I  N  E  E  S  S  S  V  L  P  P  G :   A  C  K  G  C  G  R  L  E  I  E  S  G  C  N  G  E  G  R  I  Q  G  G  I  A  T  I  P  G  F  G  W  W  P  I  K  A  Y  R  P  C  P  A  F  V  A  S  G  G  R  Y  K  R  F  G  Q  S  M  D  E  V  V  S  G  K  G  G  R  V  S  T  V  G  T  D  V  E  V  Q  S  S :   T  K  K  N  R  T  K  R  S  K  S  *  L  L  E  C  N  F  K  R  L  E  V  V  W  L  S  T  E  F  K  L  L  T  W  Q  F  P  R  L  S  I  G  F  L  V  I  K  T  *  I  A  C  I  Y  T  N  P  K  W  L  F  V  L  A  I  V  I  K  M  N  Y  V  V  L  F  P  T  I  L  F  S  L  L  L  V  K  T  S  P  V  K  L  Y  *  L  C  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123548" stop="123819"/>
                    <exon start="124425" stop="124667"/>
                    <exon start="125246" stop="125282"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQWSRVAEKMITATSMATGGSSSVFLSVPKLPSQKLQILSHKQVFFTNKKWSTLPFLCSSSTPLVEEENGSTDDVLPASINEESSSVLPPGACKGCGRLEIESGCNGEGRIQGGIATIPGFGWWPIKAYRPCPAFVASGGRYKRFGQSMDEVVSGKGGRVSTVGTDVEVQSSTKKNRTKRSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="125974" PGL_stop="129173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125974" e_stop="126409"/>
            <exon e_start="127041" e_stop="127146"/>
            <exon e_start="128929" e_stop="129173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.960" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="125974" e_stop="126409" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.960">
            <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127041" e_stop="127146" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="128929" e_stop="129173" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125974" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATCATAAAAACCTAAATAGAGCGAGTGTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA : TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG : GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</gDNA_template>
            <first_frame> V  I  I  K  T  *  I  E  R  V  F  S  S  T  S  P  I  E  R  N  S  A  P  A  K  N  L  L  K  F  H  N  F  L  R  N  G  F  *  N  F  Q  W  N  R  R  N  G  T  *  Y  P  Q  N  L  *  P  G  R  S  F  G  A  K  N  P  K  N  G  F  R  K  A  R  S  *  P  I  R  T  D  P  E  E  I  C  P  A  G  G  G  E  V  P  C  *  R  T  S  K  T  *  S  K  C  C  *  *  S  E  G  G  G  G  G  R  R  E  *  *  R  R  R  G  R  Q  S  E  K  Q  R  *  *  G  V  *  *  R  R  R  S  H  R  L  P   : I  V  A  K  E  K  S  D  C  Y  *  L  *  G  K  N  S  G  V  D  K  R  V  L  Q  Q  R  G  Q  G  V  A  Y  F  *  R :   D  K  F  D  S  *  A  M  G  N  F  Q  E  E  Y  S  W  S  *  T  S  H  Q  E  N  G  V  E  G  L  V  *  F  L  I  S  V  T  C  S  K  L  Y  L  K  T  *  N  T  R  R  H  V  F  L  G  K  L  V  *  L  L  V  N  M  Q  Y  Y  A  C  S  L  G  *  Y  R  F  S  L  I  *  </first_frame>
            <second_frame>  *  S  *  K  P  K  *  S  E  C  F  H  L  L  P  Q  L  S  E  I  P  P  L  Q  K  T  F  *  N  S  T  T  F  S  E  M  D  S  E  T  S  N  G  I  E  E  T  V  L  D  I  L  K  T  S  N  L  E  E  V  S  E  Q  K  I  R  R  M  A  S  E  K  L  G  L  D  L  S  E  P  T  R  K  K  F  V  R  Q  V  V  E  K  F  L  A  E  E  Q  A  K  R  E  A  N  A  A  D  E  V  K  E  E  E  E  D  D  E  N  D  E  E  E  E  D  G  K  V  K  S  S  G  D  K  E  Y  D  D  E  G  D  L  I  V  C  R  :  L  S  Q  K  R  R  V  T  V  T  D  F  R  G  K  T  L  V  S  I  R  E  Y  Y  S  K  E  G  K  E  L  P  T  S  K   : G  I  S  L  T  A  E  Q  W  A  T  F  K  K  N  I  P  G  V  E  Q  A  I  K  K  M  E  S  K  A  *  F  S  S  *  F  R  L  H  A  V  N  Y  I  *  R  L  K  T  L  G  D  M  F  F  W  V  N  W  F  N  F  W  L  T  C  S  I  M  P  A  L  L  A  N  T  D  F  L  *  F  E </second_frame>
            <third_frame>   N  H  K  N  L  N  R  A  S  V  F  I  Y  F  P  N  *  A  K  F  R  P  C  K  K  P  F  E  I  P  Q  L  S  P  K  W  I  L  K  L  P  M  E  S  K  K  R  Y  L  I  S  S  K  P  L  T  W  K  K  F  R  S  K  K  S  E  E  W  L  Q  K  S  *  V  L  T  Y  P  N  R  P  G  R  N  L  S  G  R  W  W  R  S  S  L  L  K  N  K  Q  N  V  K  Q  M  L  L  M  K  *  R  R  R  R  R  T  T  R  M  M  K  K  K  R  T  A  K  *  K  A  A  V  I  R  S  M  M  T  K  A  I  S  S  F  A  D :   C  R  K  R  E  E  *  L  L  L  T  L  G  E  K  L  W  C  R  *  E  S  T  T  A  K  R  A  R  S  C  L  L  L  K  :  G  *  V  *  Q  L  S  N  G  Q  L  S  R  R  I  F  L  E  L  N  K  P  S  R  K  W  S  R  R  L  S  L  V  L  D  F  G  Y  M  Q  *  T  I  F  E  D  L  K  H  *  E  T  C  F  F  G  *  I  G  L  T  F  G  *  H  A  V  L  C  L  L  S  W  L  I  Q  I  F  S  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126059" stop="126409"/>
                    <exon start="127041" stop="127146"/>
                    <exon start="128929" stop="129020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTTFSEMDSETSNGIEETVLDILKTSNLEEVSEQKIRRMASEKLGLDLSEPTRKKFVRQVVEKFLAEEQAKREANAADEVKEEEEDDENDEEEEDGKVKSSGDKEYDDEGDLIVCRLSQKRRVTVTDFRGKTLVSIREYYSKEGKELPTSKGISLTAEQWATFKKNIPGVEQAIKKMESKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="130275" PGL_stop="132713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130275" e_stop="130904"/>
            <exon e_start="131594" e_stop="132713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="130275" e_stop="130904" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130905" i_stop="131593" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131594" e_stop="132713" e_length="1120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130275" stop="130792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130729" stop="130904"/>
              <exon start="131594" stop="132713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATTTATTTGTTTTCTGATATTTTTATATATAAGAAGAAATTACAGTATTATTTTAATATAATATAAGCAAAAGAAGGGAAAATCAGTTGAGAATGTTGCTTAGGAAACTTTATTGTCATATTTTCATTATGAAAAAGAGAAAAAACATTTCTCTTTATATCAAAATTCAAAAGTTCCATCCACAATTAGAGTTACATTACTTTTCAATTCATTTTATTTCCTCATGGTTAAGGATAATTGATGAAGAGTAACAATGATAACATATATATGCCACGTGTCCTCTTAAGATCCATTCATCCAAAATCTTGTCTAAATTCTTAATTGGTTGTCTAAATACCAATTGGCAATACCAAACACCACATATATCATTTTTAAAATACCAAACTACTATCCATATGTACTCCTCCTAAGTTAGTTCCATAGCATAACTTAGAAAAAACTTCAAAAAAAAAAAAAAACATATTTCATTGAAATTCAAAGTAAATTTTTTCAAGTATGGGTTGTGCCTCATCAAAGAGAATAAAGGTTGCCATCGACGTCTACCGTCCTCCGCCGACGAGCTTCGCCGTCTTCGATATCAACTCCATTGAAGAACCATGGCTCAAAAGTGCAAACAACAACAACAAG : GTAGAAGAAAATGAGTTGGATCAGGACGAGCTAGACGAAGATGAGAAGCCAATAAAAGTAGCACAACCAATTCTAGAAAAACTCAACACTTCTATTGATGATTCTCCAAAATCATGGGATGAAGTTAGCAAAGCTTTAGAAGATTTAAAACCCACTCTACAAAACCCACCACCACAAAAATCACCTAAAAAACCCCTCCTTGCCCTACCGGCGCCGCCTCCGCCGCCATCAGAGGCGGCGGAAGACGGCGACGGTTCACCAAAAAGAAAAATTCCAAGAAAGAGTTTTTCCTTTCATACCCTTGAAGAACTTGAATCCAAATTATCATCAAAAGATGCCAAAAAGAACAATGAAGTGATCAAGAAAAATGAGGAAAATAAAAAATTCCAACGATTCAATAAAAAAAATGATACACAAATTGCTGTTCATAATGGGGAAGTAGAACATCAAAGGACTCACTCAGATGAAGGGTACAAGCCAGTAAAAGAGAATATATTTTTGTTGAGGGACAAAATGGAAAGGGAAAAAGAAGGGAAAGTTCCAAATTTTATAAAGTTTAACCCTTTAAGTGACTACCCCGAAAAGTGCCCGCCACGTGGCGATGACTCATTGGTCATCTACACGACGTCGCTAGGTGGCGTGCGTCGTACGTTTGAGGATTGTAATAAGTTGAGGTTAATTTTGGAATCCCATAGGGTGGTTTTCGACGAGCGTGACGTGGCATTGCATGGCGAGTTTCGTCAGGAGCTGAAGGAGTTGCTTGGAGATGGGGAGGACGCGGGAGTACCGCGGTTGTTTGTGAAGGGGAGGTACATTGGTGGAGTGGAGGAAGTGGTGCACCTGAACGAGACGAAGAAACTCGGGAGGATATTGAATTGGGCTAGGGTGGAGAGGGGTCTGGGGAGGTTAGGATGTGAAGGGTGCGGAGGTGCTAGGTTTGTGCCATGTTTTGATTGTGGAGGGAGTTGCAAAGTTGTGAATGGGGATGTTAAGGAGAGATGTCCTAAGTGTAATGAGAATGGTTTGATTCATTGCCCTATTTGCAATTGAATAATTGTTATGTATTATTGTACGCATACATTAAATCAATGAATACATAGTGATGTTGTTACTTTGTGAA</gDNA_template>
            <first_frame> V  I  Y  L  F  S  D  I  F  I  Y  K  K  K  L  Q  Y  Y  F  N  I  I  *  A  K  E  G  K  I  S  *  E  C  C  L  G  N  F  I  V  I  F  S  L  *  K  R  E  K  T  F  L  F  I  S  K  F  K  S  S  I  H  N  *  S  Y  I  T  F  Q  F  I  L  F  P  H  G  *  G  *  L  M  K  S  N  N  D  N  I  Y  M  P  R  V  L  L  R  S  I  H  P  K  S  C  L  N  S  *  L  V  V  *  I  P  I  G  N  T  K  H  H  I  Y  H  F  *  N  T  K  L  L  S  I  C  T  P  P  K  L  V  P  *  H  N  L  E  K  T  S  K  K  K  K  N  I  F  H  *  N  S  K  *  I  F  S  S  M  G  C  A  S  S  K  R  I  K  V  A  I  D  V  Y  R  P  P  P  T  S  F  A  V  F  D  I  N  S  I  E  E  P  W  L  K  S  A  N  N  N  N  K  :  V  E  E  N  E  L  D  Q  D  E  L  D  E  D  E  K  P  I  K  V  A  Q  P  I  L  E  K  L  N  T  S  I  D  D  S  P  K  S  W  D  E  V  S  K  A  L  E  D  L  K  P  T  L  Q  N  P  P  P  Q  K  S  P  K  K  P  L  L  A  L  P  A  P  P  P  P  P  S  E  A  A  E  D  G  D  G  S  P  K  R  K  I  P  R  K  S  F  S  F  H  T  L  E  E  L  E  S  K  L  S  S  K  D  A  K  K  N  N  E  V  I  K  K  N  E  E  N  K  K  F  Q  R  F  N  K  K  N  D  T  Q  I  A  V  H  N  G  E  V  E  H  Q  R  T  H  S  D  E  G  Y  K  P  V  K  E  N  I  F  L  L  R  D  K  M  E  R  E  K  E  G  K  V  P  N  F  I  K  F  N  P  L  S  D  Y  P  E  K  C  P  P  R  G  D  D  S  L  V  I  Y  T  T  S  L  G  G  V  R  R  T  F  E  D  C  N  K  L  R  L  I  L  E  S  H  R  V  V  F  D  E  R  D  V  A  L  H  G  E  F  R  Q  E  L  K  E  L  L  G  D  G  E  D  A  G  V  P  R  L  F  V  K  G  R  Y  I  G  G  V  E  E  V  V  H  L  N  E  T  K  K  L  G  R  I  L  N  W  A  R  V  E  R  G  L  G  R  L  G  C  E  G  C  G  G  A  R  F  V  P  C  F  D  C  G  G  S  C  K  V  V  N  G  D  V  K  E  R  C  P  K  C  N  E  N  G  L  I  H  C  P  I  C  N  *  I  I  V  M  Y  Y  C  T  H  T  L  N  Q  *  I  H  S  D  V  V  T  L  *  </first_frame>
            <second_frame>  L  F  I  C  F  L  I  F  L  Y  I  R  R  N  Y  S  I  I  L  I  *  Y  K  Q  K  K  G  K  S  V  E  N  V  A  *  E  T  L  L  S  Y  F  H  Y  E  K  E  K  K  H  F  S  L  Y  Q  N  S  K  V  P  S  T  I  R  V  T  L  L  F  N  S  F  Y  F  L  M  V  K  D  N  *  *  R  V  T  M  I  T  Y  I  C  H  V  S  S  *  D  P  F  I  Q  N  L  V  *  I  L  N  W  L  S  K  Y  Q  L  A  I  P  N  T  T  Y  I  I  F  K  I  P  N  Y  Y  P  Y  V  L  L  L  S  *  F  H  S  I  T  *  K  K  L  Q  K  K  K  K  T  Y  F  I  E  I  Q  S  K  F  F  Q  V  W  V  V  P  H  Q  R  E  *  R  L  P  S  T  S  T  V  L  R  R  R  A  S  P  S  S  I  S  T  P  L  K  N  H  G  S  K  V  Q  T  T  T  T  R :   *  K  K  M  S  W  I  R  T  S  *  T  K  M  R  S  Q  *  K  *  H  N  Q  F  *  K  N  S  T  L  L  L  M  I  L  Q  N  H  G  M  K  L  A  K  L  *  K  I  *  N  P  L  Y  K  T  H  H  H  K  N  H  L  K  N  P  S  L  P  Y  R  R  R  L  R  R  H  Q  R  R  R  K  T  A  T  V  H  Q  K  E  K  F  Q  E  R  V  F  P  F  I  P  L  K  N  L  N  P  N  Y  H  Q  K  M  P  K  R  T  M  K  *  S  R  K  M  R  K  I  K  N  S  N  D  S  I  K  K  M  I  H  K  L  L  F  I  M  G  K  *  N  I  K  G  L  T  Q  M  K  G  T  S  Q  *  K  R  I  Y  F  C  *  G  T  K  W  K  G  K  K  K  G  K  F  Q  I  L  *  S  L  T  L  *  V  T  T  P  K  S  A  R  H  V  A  M  T  H  W  S  S  T  R  R  R  *  V  A  C  V  V  R  L  R  I  V  I  S  *  G  *  F  W  N  P  I  G  W  F  S  T  S  V  T  W  H  C  M  A  S  F  V  R  S  *  R  S  C  L  E  M  G  R  T  R  E  Y  R  G  C  L  *  R  G  G  T  L  V  E  W  R  K  W  C  T  *  T  R  R  R  N  S  G  G  Y  *  I  G  L  G  W  R  G  V  W  G  G  *  D  V  K  G  A  E  V  L  G  L  C  H  V  L  I  V  E  G  V  A  K  L  *  M  G  M  L  R  R  D  V  L  S  V  M  R  M  V  *  F  I  A  L  F  A  I  E  *  L  L  C  I  I  V  R  I  H  *  I  N  E  Y  I  V  M  L  L  L  C  E </second_frame>
            <third_frame>   Y  L  F  V  F  *  Y  F  Y  I  *  E  E  I  T  V  L  F  *  Y  N  I  S  K  R  R  E  N  Q  L  R  M  L  L  R  K  L  Y  C  H  I  F  I  M  K  K  R  K  N  I  S  L  Y  I  K  I  Q  K  F  H  P  Q  L  E  L  H  Y  F  S  I  H  F  I  S  S  W  L  R  I  I  D  E  E  *  Q  *  *  H  I  Y  A  T  C  P  L  K  I  H  S  S  K  I  L  S  K  F  L  I  G  C  L  N  T  N  W  Q  Y  Q  T  P  H  I  S  F  L  K  Y  Q  T  T  I  H  M  Y  S  S  *  V  S  S  I  A  *  L  R  K  N  F  K  K  K  K  K  H  I  S  L  K  F  K  V  N  F  F  K  Y  G  L  C  L  I  K  E  N  K  G  C  H  R  R  L  P  S  S  A  D  E  L  R  R  L  R  Y  Q  L  H  *  R  T  M  A  Q  K  C  K  Q  Q  Q  Q   : G  R  R  K  *  V  G  S  G  R  A  R  R  R  *  E  A  N  K  S  S  T  T  N  S  R  K  T  Q  H  F  Y  *  *  F  S  K  I  M  G  *  S  *  Q  S  F  R  R  F  K  T  H  S  T  K  P  T  T  T  K  I  T  *  K  T  P  P  C  P  T  G  A  A  S  A  A  I  R  G  G  G  R  R  R  R  F  T  K  K  K  N  S  K  K  E  F  F  L  S  Y  P  *  R  T  *  I  Q  I  I  I  K  R  C  Q  K  E  Q  *  S  D  Q  E  K  *  G  K  *  K  I  P  T  I  Q  *  K  K  *  Y  T  N  C  C  S  *  W  G  S  R  T  S  K  D  S  L  R  *  R  V  Q  A  S  K  R  E  Y  I  F  V  E  G  Q  N  G  K  G  K  R  R  E  S  S  K  F  Y  K  V  *  P  F  K  *  L  P  R  K  V  P  A  T  W  R  *  L  I  G  H  L  H  D  V  A  R  W  R  A  S  Y  V  *  G  L  *  *  V  E  V  N  F  G  I  P  *  G  G  F  R  R  A  *  R  G  I  A  W  R  V  S  S  G  A  E  G  V  A  W  R  W  G  G  R  G  S  T  A  V  V  C  E  G  E  V  H  W  W  S  G  G  S  G  A  P  E  R  D  E  E  T  R  E  D  I  E  L  G  *  G  G  E  G  S  G  E  V  R  M  *  R  V  R  R  C  *  V  C  A  M  F  *  L  W  R  E  L  Q  S  C  E  W  G  C  *  G  E  M  S  *  V  *  *  E  W  F  D  S  L  P  Y  L  Q  L  N  N  C  Y  V  L  L  Y  A  Y  I  K  S  M  N  T  *  *  C  C  Y  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130761" stop="130904"/>
                    <exon start="131594" stop="132643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSMGCASSKRIKVAIDVYRPPPTSFAVFDINSIEEPWLKSANNNNKVEENELDQDELDEDEKPIKVAQPILEKLNTSIDDSPKSWDEVSKALEDLKPTLQNPPPQKSPKKPLLALPAPPPPPSEAAEDGDGSPKRKIPRKSFSFHTLEELESKLSSKDAKKNNEVIKKNEENKKFQRFNKKNDTQIAVHNGEVEHQRTHSDEGYKPVKENIFLLRDKMEREKEGKVPNFIKFNPLSDYPEKCPPRGDDSLVIYTTSLGGVRRTFEDCNKLRLILESHRVVFDERDVALHGEFRQELKELLGDGEDAGVPRLFVKGRYIGGVEEVVHLNETKKLGRILNWARVERGLGRLGCEGCGGARFVPCFDCGGSCKVVNGDVKERCPKCNENGLIHCPICN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130334" stop="130528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNISKRRENQLRMLLRKLYCHIFIMKKRKNISLYIKIQKFHPQLELHYFSIHFISSWLRIIDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 109048 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 5192 bytes was the average size of a spliced alignment
$ 27168 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1509 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-08 02:11:20
-->
